Query 040440
Match_columns 355
No_of_seqs 794 out of 2397
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 13:28:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040440.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040440hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pl2_A Hypothetical conserved 100.0 5E-27 1.7E-31 190.9 21.1 185 126-319 16-212 (217)
2 3vtx_A MAMA; tetratricopeptide 99.9 8.7E-26 3E-30 178.7 22.7 171 147-325 3-174 (184)
3 2pl2_A Hypothetical conserved 99.9 2E-25 6.8E-30 181.5 24.1 174 146-328 2-187 (217)
4 2h6f_A Protein farnesyltransfe 99.9 3.5E-25 1.2E-29 194.3 20.6 218 107-336 91-319 (382)
5 2q7f_A YRRB protein; TPR, prot 99.9 1.8E-24 6.2E-29 178.5 23.4 195 127-329 35-230 (243)
6 1w3b_A UDP-N-acetylglucosamine 99.9 4.1E-24 1.4E-28 189.2 26.9 208 109-327 131-340 (388)
7 1w3b_A UDP-N-acetylglucosamine 99.9 3.7E-24 1.3E-28 189.6 25.8 210 108-328 164-375 (388)
8 4eqf_A PEX5-related protein; a 99.9 1.6E-24 5.4E-29 190.3 23.1 198 126-331 76-286 (365)
9 3hym_B Cell division cycle pro 99.9 1.1E-23 3.8E-28 181.8 26.2 219 108-329 85-307 (330)
10 2ho1_A Type 4 fimbrial biogene 99.9 1.4E-23 4.9E-28 174.4 25.4 195 128-330 50-247 (252)
11 3uq3_A Heat shock protein STI1 99.9 6.4E-24 2.2E-28 176.7 22.1 194 126-328 16-249 (258)
12 3ieg_A DNAJ homolog subfamily 99.9 5E-23 1.7E-27 179.6 28.0 198 126-331 14-227 (359)
13 2xpi_A Anaphase-promoting comp 99.9 4.2E-23 1.4E-27 192.9 29.2 204 126-330 383-588 (597)
14 3hym_B Cell division cycle pro 99.9 5.6E-23 1.9E-27 177.3 26.9 216 108-333 51-277 (330)
15 4eqf_A PEX5-related protein; a 99.9 4.7E-24 1.6E-28 187.3 20.4 208 107-325 93-314 (365)
16 2vq2_A PILW, putative fimbrial 99.9 6.7E-23 2.3E-27 166.9 25.9 198 126-331 19-221 (225)
17 2h6f_A Protein farnesyltransfe 99.9 4.1E-24 1.4E-28 187.5 19.8 227 105-337 123-364 (382)
18 4abn_A Tetratricopeptide repea 99.9 2.1E-23 7.2E-28 189.3 25.1 206 130-336 83-302 (474)
19 1fch_A Peroxisomal targeting s 99.9 2E-22 7E-27 176.8 30.1 192 126-325 75-318 (368)
20 4gyw_A UDP-N-acetylglucosamine 99.9 3.7E-24 1.3E-28 201.7 19.9 173 144-324 4-177 (723)
21 3ieg_A DNAJ homolog subfamily 99.9 1.7E-22 5.7E-27 176.3 29.1 203 126-336 131-350 (359)
22 4i17_A Hypothetical protein; T 99.9 2.7E-23 9.1E-28 170.2 21.9 181 146-334 4-222 (228)
23 2y4t_A DNAJ homolog subfamily 99.9 1.3E-22 4.4E-27 183.0 25.3 197 126-330 37-249 (450)
24 3mkr_A Coatomer subunit epsilo 99.9 6.4E-22 2.2E-26 167.9 27.5 193 126-331 75-274 (291)
25 3cv0_A Peroxisome targeting si 99.9 2.1E-22 7E-27 173.6 23.9 196 126-329 32-243 (327)
26 2y4t_A DNAJ homolog subfamily 99.9 3.4E-22 1.2E-26 180.2 26.3 202 126-335 154-372 (450)
27 3u4t_A TPR repeat-containing p 99.9 3E-22 1E-26 168.2 22.4 188 126-322 14-209 (272)
28 3fp2_A TPR repeat-containing p 99.9 2E-21 6.7E-26 179.1 28.6 218 108-330 272-500 (537)
29 1fch_A Peroxisomal targeting s 99.9 5.5E-22 1.9E-26 174.0 23.6 200 129-329 39-288 (368)
30 3cv0_A Peroxisome targeting si 99.9 2.7E-22 9.2E-27 172.8 21.2 206 109-324 51-272 (327)
31 2vq2_A PILW, putative fimbrial 99.9 1.9E-21 6.4E-26 158.3 25.0 177 144-328 3-184 (225)
32 3u4t_A TPR repeat-containing p 99.9 2.5E-22 8.5E-27 168.7 20.1 217 106-334 30-263 (272)
33 4abn_A Tetratricopeptide repea 99.9 1.2E-22 4.1E-27 184.3 19.3 183 126-317 112-317 (474)
34 2xpi_A Anaphase-promoting comp 99.9 1.6E-21 5.6E-26 182.1 27.4 190 130-327 320-551 (597)
35 3vtx_A MAMA; tetratricopeptide 99.9 5.7E-22 1.9E-26 156.7 20.3 159 126-292 16-175 (184)
36 3qky_A Outer membrane assembly 99.9 2.8E-21 9.7E-26 161.5 22.7 179 142-328 8-231 (261)
37 2ho1_A Type 4 fimbrial biogene 99.9 4.7E-21 1.6E-25 159.1 23.9 177 144-328 31-211 (252)
38 1xnf_A Lipoprotein NLPI; TPR, 99.9 6E-21 2.1E-25 160.3 23.7 187 130-326 58-249 (275)
39 4i17_A Hypothetical protein; T 99.9 5.7E-21 2E-25 156.3 22.3 170 126-303 18-225 (228)
40 2gw1_A Mitochondrial precursor 99.9 3.8E-21 1.3E-25 176.1 22.6 214 113-330 270-487 (514)
41 3as5_A MAMA; tetratricopeptide 99.9 4.9E-21 1.7E-25 150.8 19.4 172 148-327 7-179 (186)
42 3uq3_A Heat shock protein STI1 99.9 8E-21 2.8E-25 157.9 21.7 180 148-329 4-210 (258)
43 2q7f_A YRRB protein; TPR, prot 99.9 7.8E-21 2.7E-25 156.6 19.6 173 148-328 22-195 (243)
44 2ond_A Cleavage stimulation fa 99.9 4.3E-20 1.5E-24 158.2 24.6 181 132-320 33-231 (308)
45 4gyw_A UDP-N-acetylglucosamine 99.9 2.8E-21 9.6E-26 182.2 18.0 170 109-289 5-176 (723)
46 2gw1_A Mitochondrial precursor 99.9 6.5E-21 2.2E-25 174.5 19.9 194 127-329 249-452 (514)
47 3urz_A Uncharacterized protein 99.9 8.7E-21 3E-25 153.0 17.7 159 126-290 15-189 (208)
48 3fp2_A TPR repeat-containing p 99.9 1.3E-20 4.3E-25 173.8 21.2 188 130-326 217-412 (537)
49 3urz_A Uncharacterized protein 99.9 1.1E-20 3.7E-25 152.4 18.0 169 148-325 3-190 (208)
50 3nf1_A KLC 1, kinesin light ch 99.9 6E-21 2.1E-25 163.1 17.3 197 127-324 39-310 (311)
51 2pzi_A Probable serine/threoni 99.9 5.5E-21 1.9E-25 180.8 18.4 174 126-307 402-583 (681)
52 2ond_A Cleavage stimulation fa 99.9 8.1E-20 2.8E-24 156.5 23.0 190 131-327 80-276 (308)
53 2yhc_A BAMD, UPF0169 lipoprote 99.9 1.3E-19 4.4E-24 148.0 22.0 179 148-326 3-218 (225)
54 3edt_B KLC 2, kinesin light ch 99.9 2.5E-20 8.6E-25 156.9 17.5 192 130-322 16-282 (283)
55 4a1s_A PINS, partner of inscut 99.9 2.7E-20 9.2E-25 165.8 18.1 200 126-325 59-296 (411)
56 3mkr_A Coatomer subunit epsilo 99.9 1.6E-19 5.5E-24 153.1 22.0 188 126-329 44-237 (291)
57 3qky_A Outer membrane assembly 99.8 5E-20 1.7E-24 153.9 18.3 178 126-311 26-251 (261)
58 4ga2_A E3 SUMO-protein ligase 99.8 3.7E-21 1.3E-25 146.6 9.6 145 155-307 3-149 (150)
59 1qqe_A Vesicular transport pro 99.8 1.1E-19 3.7E-24 154.5 19.0 183 130-327 32-234 (292)
60 1ouv_A Conserved hypothetical 99.8 3.5E-18 1.2E-22 143.6 26.2 177 130-323 21-217 (273)
61 2pzi_A Probable serine/threoni 99.8 3.5E-20 1.2E-24 175.3 15.3 175 143-329 388-571 (681)
62 3sf4_A G-protein-signaling mod 99.8 1.9E-19 6.6E-24 159.6 19.1 200 126-325 20-260 (406)
63 1xnf_A Lipoprotein NLPI; TPR, 99.8 8.1E-19 2.8E-23 147.3 21.1 195 105-315 69-269 (275)
64 3ro2_A PINS homolog, G-protein 99.8 2.2E-19 7.7E-24 154.7 17.4 200 126-325 16-256 (338)
65 4g1t_A Interferon-induced prot 99.8 2.3E-18 7.9E-23 156.2 24.8 195 127-328 63-283 (472)
66 4g1t_A Interferon-induced prot 99.8 1.5E-18 5.2E-23 157.4 23.2 190 128-325 151-367 (472)
67 1ouv_A Conserved hypothetical 99.8 3.6E-18 1.2E-22 143.6 23.8 180 129-325 56-255 (273)
68 2r5s_A Uncharacterized protein 99.8 1.1E-19 3.8E-24 142.4 13.0 167 146-320 3-172 (176)
69 3as5_A MAMA; tetratricopeptide 99.8 8.7E-19 3E-23 137.8 17.5 160 126-293 19-179 (186)
70 4ga2_A E3 SUMO-protein ligase 99.8 1.8E-19 6.1E-24 137.3 12.3 138 130-273 12-149 (150)
71 3qou_A Protein YBBN; thioredox 99.8 1.1E-18 3.8E-23 147.8 18.2 169 144-320 112-283 (287)
72 3ulq_A Response regulator aspa 99.8 6.4E-19 2.2E-23 155.6 16.4 192 126-318 114-332 (383)
73 4gco_A Protein STI-1; structur 99.8 1.1E-18 3.6E-23 128.6 14.7 118 143-301 7-124 (126)
74 1qqe_A Vesicular transport pro 99.8 3.4E-19 1.1E-23 151.4 13.4 189 129-325 51-273 (292)
75 3nf1_A KLC 1, kinesin light ch 99.8 1.6E-18 5.5E-23 148.0 17.4 177 145-322 23-225 (311)
76 3sf4_A G-protein-signaling mod 99.8 7E-19 2.4E-23 156.0 15.1 196 128-324 60-299 (406)
77 4a1s_A PINS, partner of inscut 99.8 5.4E-19 1.8E-23 157.4 14.4 196 128-324 99-335 (411)
78 2ooe_A Cleavage stimulation fa 99.8 2.1E-17 7.2E-22 152.2 24.9 187 132-326 255-459 (530)
79 2vsy_A XCC0866; transferase, g 99.8 6.8E-18 2.3E-22 156.8 21.1 163 129-299 3-169 (568)
80 2ifu_A Gamma-SNAP; membrane fu 99.8 5.1E-18 1.7E-22 145.2 18.5 197 130-329 6-231 (307)
81 4f3v_A ESX-1 secretion system 99.8 9.3E-19 3.2E-23 144.5 12.9 194 126-329 17-244 (282)
82 3ro2_A PINS homolog, G-protein 99.8 1.4E-18 4.9E-23 149.6 14.5 196 128-324 56-295 (338)
83 2vsy_A XCC0866; transferase, g 99.8 6.1E-18 2.1E-22 157.2 19.6 157 162-326 2-162 (568)
84 3ulq_A Response regulator aspa 99.8 4E-18 1.4E-22 150.5 16.9 171 152-323 106-295 (383)
85 4gco_A Protein STI-1; structur 99.8 6.4E-18 2.2E-22 124.4 15.1 118 174-332 4-121 (126)
86 2yhc_A BAMD, UPF0169 lipoprote 99.8 2.2E-17 7.6E-22 134.6 18.2 159 126-292 15-218 (225)
87 3gyz_A Chaperone protein IPGC; 99.8 1.8E-18 6.3E-23 131.1 10.5 115 170-325 23-137 (151)
88 3dss_A Geranylgeranyl transfer 99.8 5.7E-16 1.9E-20 131.5 25.8 189 131-325 46-271 (331)
89 3rjv_A Putative SEL1 repeat pr 99.8 1.8E-16 6.1E-21 127.9 21.6 175 133-323 4-199 (212)
90 3q15_A PSP28, response regulat 99.8 3.7E-17 1.3E-21 144.1 18.3 173 151-324 103-293 (378)
91 3dra_A Protein farnesyltransfe 99.8 2.3E-16 8E-21 133.1 22.1 225 105-331 59-298 (306)
92 3q15_A PSP28, response regulat 99.8 5E-17 1.7E-21 143.2 18.9 189 126-316 112-327 (378)
93 2vgx_A Chaperone SYCD; alterna 99.8 2E-17 6.7E-22 125.5 14.1 121 170-331 8-128 (148)
94 3dra_A Protein farnesyltransfe 99.8 1.6E-16 5.6E-21 134.1 21.0 198 130-335 48-267 (306)
95 1p5q_A FKBP52, FK506-binding p 99.7 2.6E-19 8.8E-24 155.1 2.7 182 130-321 80-294 (336)
96 2qfc_A PLCR protein; TPR, HTH, 99.7 2.3E-16 7.9E-21 134.0 20.2 177 145-322 71-267 (293)
97 2ooe_A Cleavage stimulation fa 99.7 1.2E-16 4.1E-21 147.2 19.4 213 106-325 265-496 (530)
98 2r5s_A Uncharacterized protein 99.7 2.5E-17 8.6E-22 128.9 12.2 152 126-286 17-172 (176)
99 2xcb_A PCRH, regulatory protei 99.7 1.2E-16 4.2E-21 120.3 14.0 122 171-333 6-127 (142)
100 3gyz_A Chaperone protein IPGC; 99.7 2.7E-17 9.3E-22 124.6 10.4 111 132-250 19-129 (151)
101 1dce_A Protein (RAB geranylger 99.7 3.1E-17 1.1E-21 151.0 12.8 187 130-324 44-270 (567)
102 2fo7_A Synthetic consensus TPR 99.7 7.3E-16 2.5E-20 114.2 17.9 134 150-324 2-135 (136)
103 3u3w_A Transcriptional activat 99.7 7.4E-16 2.5E-20 130.8 19.7 170 152-322 78-267 (293)
104 2fo7_A Synthetic consensus TPR 99.7 1.1E-15 3.8E-20 113.2 18.4 106 127-232 13-118 (136)
105 3qou_A Protein YBBN; thioredox 99.7 1.6E-16 5.4E-21 134.5 15.3 153 126-286 128-283 (287)
106 2vgx_A Chaperone SYCD; alterna 99.7 1.5E-16 5.2E-21 120.6 13.3 97 136-232 8-104 (148)
107 2c2l_A CHIP, carboxy terminus 99.7 2.4E-16 8.3E-21 132.9 15.0 183 126-321 15-199 (281)
108 3dss_A Geranylgeranyl transfer 99.7 1.6E-14 5.6E-19 122.5 26.0 221 105-325 56-308 (331)
109 3edt_B KLC 2, kinesin light ch 99.7 2.4E-16 8.1E-21 132.4 14.4 162 160-322 12-199 (283)
110 2xcb_A PCRH, regulatory protei 99.7 1.5E-16 5.2E-21 119.8 11.5 97 136-232 5-101 (142)
111 2e2e_A Formate-dependent nitri 99.7 9E-16 3.1E-20 120.0 16.0 87 130-216 25-114 (177)
112 1p5q_A FKBP52, FK506-binding p 99.7 5.3E-17 1.8E-21 140.5 9.5 150 130-287 128-294 (336)
113 3mv2_B Coatomer subunit epsilo 99.7 5.1E-15 1.8E-19 123.7 19.0 187 134-331 85-292 (310)
114 3q7a_A Farnesyltransferase alp 99.7 1.9E-14 6.4E-19 122.7 22.6 179 130-308 69-258 (349)
115 1a17_A Serine/threonine protei 99.7 9.3E-15 3.2E-19 112.6 18.5 132 149-321 13-146 (166)
116 4gcn_A Protein STI-1; structur 99.7 1.8E-15 6E-20 111.5 13.4 113 149-296 8-120 (127)
117 3upv_A Heat shock protein STI1 99.7 7.9E-15 2.7E-19 107.8 16.9 121 147-268 2-122 (126)
118 1hh8_A P67PHOX, NCF-2, neutrop 99.7 9.9E-15 3.4E-19 117.6 18.7 139 150-292 7-155 (213)
119 2xm6_A Protein corresponding t 99.7 5.5E-14 1.9E-18 128.1 25.5 181 130-324 238-435 (490)
120 2ifu_A Gamma-SNAP; membrane fu 99.7 3.4E-15 1.2E-19 127.6 16.5 184 126-313 46-253 (307)
121 2qfc_A PLCR protein; TPR, HTH, 99.7 4.3E-14 1.5E-18 119.9 22.9 161 126-287 86-266 (293)
122 3gw4_A Uncharacterized protein 99.6 6.6E-15 2.3E-19 117.5 16.3 163 160-323 3-178 (203)
123 3q7a_A Farnesyltransferase alp 99.6 1.7E-14 6E-19 122.9 19.7 172 158-337 63-253 (349)
124 3u3w_A Transcriptional activat 99.6 1.3E-14 4.5E-19 123.1 18.9 161 126-287 86-266 (293)
125 3gw4_A Uncharacterized protein 99.6 7.7E-15 2.6E-19 117.1 16.4 163 126-289 3-178 (203)
126 1hz4_A MALT regulatory protein 99.6 1.8E-14 6E-19 126.6 20.1 193 129-323 67-284 (373)
127 2fbn_A 70 kDa peptidylprolyl i 99.6 3.2E-16 1.1E-20 125.0 8.1 152 152-328 7-158 (198)
128 3sz7_A HSC70 cochaperone (SGT) 99.6 9.1E-15 3.1E-19 112.8 15.3 116 146-302 8-123 (164)
129 1hh8_A P67PHOX, NCF-2, neutrop 99.6 1.1E-14 3.6E-19 117.4 16.2 132 184-326 7-155 (213)
130 2e2e_A Formate-dependent nitri 99.6 4.3E-15 1.5E-19 116.1 12.7 108 108-218 39-150 (177)
131 2xm6_A Protein corresponding t 99.6 2.6E-13 8.9E-18 123.6 26.0 175 130-321 94-288 (490)
132 2lni_A Stress-induced-phosphop 99.6 2.3E-14 7.7E-19 106.0 15.0 122 145-307 12-133 (133)
133 2lni_A Stress-induced-phosphop 99.6 1.9E-14 6.4E-19 106.5 14.4 120 110-231 13-132 (133)
134 3upv_A Heat shock protein STI1 99.6 2E-14 7E-19 105.6 14.3 111 181-332 2-118 (126)
135 1dce_A Protein (RAB geranylger 99.6 6.6E-14 2.3E-18 128.9 20.9 168 161-336 40-236 (567)
136 3sz7_A HSC70 cochaperone (SGT) 99.6 4.9E-14 1.7E-18 108.7 16.4 107 180-327 8-114 (164)
137 2vyi_A SGTA protein; chaperone 99.6 2E-14 7E-19 105.7 13.6 123 145-308 8-130 (131)
138 1hz4_A MALT regulatory protein 99.6 2.4E-13 8.3E-18 119.2 22.8 174 149-323 14-205 (373)
139 1na0_A Designed protein CTPR3; 99.6 1.6E-13 5.5E-18 99.9 17.8 121 145-306 4-125 (125)
140 2vyi_A SGTA protein; chaperone 99.6 2E-14 6.9E-19 105.8 13.0 107 126-232 23-129 (131)
141 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 1.7E-15 5.7E-20 136.6 7.4 150 161-318 246-412 (457)
142 1a17_A Serine/threonine protei 99.6 1.5E-13 5.1E-18 105.7 17.5 124 126-250 24-149 (166)
143 2fbn_A 70 kDa peptidylprolyl i 99.6 3.6E-15 1.2E-19 118.9 8.4 133 147-320 36-185 (198)
144 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 2.9E-15 9.8E-20 135.1 7.7 148 130-285 249-413 (457)
145 3e4b_A ALGK; tetratricopeptide 99.6 3.6E-13 1.2E-17 121.3 21.3 176 130-323 194-389 (452)
146 3e4b_A ALGK; tetratricopeptide 99.6 2.8E-13 9.7E-18 122.0 20.1 174 130-322 160-352 (452)
147 3q49_B STIP1 homology and U bo 99.6 1.4E-13 4.7E-18 102.5 14.6 103 144-247 4-106 (137)
148 2c2l_A CHIP, carboxy terminus 99.6 5.1E-14 1.7E-18 118.6 13.5 164 107-286 32-198 (281)
149 4gcn_A Protein STI-1; structur 99.6 8.9E-14 3E-18 102.3 13.1 101 183-324 8-115 (127)
150 4b4t_Q 26S proteasome regulato 99.5 2E-13 6.8E-18 122.2 17.7 195 126-321 15-245 (434)
151 1hxi_A PEX5, peroxisome target 99.5 5.5E-14 1.9E-18 102.4 10.9 93 126-218 28-120 (121)
152 2dba_A Smooth muscle cell asso 99.5 4.4E-13 1.5E-17 101.0 16.3 80 145-224 24-106 (148)
153 2hr2_A Hypothetical protein; a 99.5 8.4E-14 2.9E-18 104.3 11.6 108 185-326 13-136 (159)
154 3ro3_A PINS homolog, G-protein 99.5 1.9E-13 6.3E-18 104.5 14.0 139 149-322 9-159 (164)
155 3q49_B STIP1 homology and U bo 99.5 2E-13 6.9E-18 101.6 13.7 106 178-324 4-109 (137)
156 3rjv_A Putative SEL1 repeat pr 99.5 4.2E-13 1.4E-17 108.1 16.2 142 166-321 3-158 (212)
157 3rkv_A Putative peptidylprolyl 99.5 4.2E-13 1.4E-17 103.1 15.6 130 183-335 11-141 (162)
158 1hxi_A PEX5, peroxisome target 99.5 1.9E-13 6.4E-18 99.6 12.7 92 151-250 19-110 (121)
159 1zu2_A Mitochondrial import re 99.5 9.9E-14 3.4E-18 103.7 11.3 92 130-221 17-129 (158)
160 1xi4_A Clathrin heavy chain; a 99.5 2.3E-12 7.8E-17 125.4 23.4 171 130-325 1091-1313(1630)
161 1wao_1 Serine/threonine protei 99.5 3.5E-15 1.2E-19 135.1 3.7 124 152-316 9-134 (477)
162 1zu2_A Mitochondrial import re 99.5 6.6E-14 2.3E-18 104.6 9.9 111 194-335 13-134 (158)
163 1elw_A TPR1-domain of HOP; HOP 99.5 8.3E-13 2.8E-17 95.1 15.2 112 149-301 4-115 (118)
164 1elw_A TPR1-domain of HOP; HOP 99.5 1.2E-12 4E-17 94.3 15.8 102 126-227 15-116 (118)
165 3rkv_A Putative peptidylprolyl 99.5 2.9E-13 9.9E-18 104.1 12.7 82 149-230 11-110 (162)
166 3ro3_A PINS homolog, G-protein 99.5 3.8E-13 1.3E-17 102.7 13.4 104 184-322 10-119 (164)
167 1na0_A Designed protein CTPR3; 99.5 1.2E-12 4.2E-17 95.1 15.2 105 127-231 21-125 (125)
168 2hr2_A Hypothetical protein; a 99.5 2.2E-12 7.4E-17 96.7 16.1 100 150-250 12-134 (159)
169 4e6h_A MRNA 3'-END-processing 99.5 5.2E-12 1.8E-16 118.0 22.2 187 132-324 326-536 (679)
170 2xev_A YBGF; tetratricopeptide 99.5 1.3E-12 4.6E-17 96.0 14.6 65 152-216 5-72 (129)
171 3k9i_A BH0479 protein; putativ 99.5 1E-13 3.4E-18 100.4 8.0 93 129-221 4-99 (117)
172 2kck_A TPR repeat; tetratricop 99.5 4.6E-13 1.6E-17 95.5 11.5 98 145-250 2-102 (112)
173 1ihg_A Cyclophilin 40; ppiase 99.5 8E-13 2.7E-17 115.5 15.0 124 149-313 223-362 (370)
174 2if4_A ATFKBP42; FKBP-like, al 99.5 6.8E-14 2.3E-18 121.0 8.0 156 147-327 177-334 (338)
175 2dba_A Smooth muscle cell asso 99.5 4.1E-12 1.4E-16 95.6 16.8 112 212-331 23-138 (148)
176 1wao_1 Serine/threonine protei 99.5 6.8E-13 2.3E-17 120.1 14.5 116 126-249 17-134 (477)
177 2xev_A YBGF; tetratricopeptide 99.5 3.7E-12 1.3E-16 93.6 15.4 106 185-328 4-112 (129)
178 2kck_A TPR repeat; tetratricop 99.4 6.5E-13 2.2E-17 94.7 10.4 105 213-325 2-110 (112)
179 4b4t_Q 26S proteasome regulato 99.4 5E-12 1.7E-16 113.1 18.6 173 150-323 5-206 (434)
180 2if4_A ATFKBP42; FKBP-like, al 99.4 6.1E-14 2.1E-18 121.3 5.6 130 182-335 178-307 (338)
181 1elr_A TPR2A-domain of HOP; HO 99.4 1.5E-12 5.1E-17 95.6 12.3 124 148-306 3-126 (131)
182 4f3v_A ESX-1 secretion system 99.4 5.8E-13 2E-17 109.9 10.2 160 152-321 10-200 (282)
183 1elr_A TPR2A-domain of HOP; HO 99.4 1.1E-12 3.8E-17 96.3 10.8 110 126-271 15-125 (131)
184 4e6h_A MRNA 3'-END-processing 99.4 2E-11 6.9E-16 114.1 20.3 216 106-329 336-578 (679)
185 1ihg_A Cyclophilin 40; ppiase 99.4 3.3E-12 1.1E-16 111.7 13.0 107 126-232 234-356 (370)
186 3k9i_A BH0479 protein; putativ 99.4 2.3E-12 7.9E-17 93.2 8.7 93 241-333 6-102 (117)
187 2kat_A Uncharacterized protein 99.4 1.1E-11 3.7E-16 89.2 11.9 83 133-215 3-85 (115)
188 1b89_A Protein (clathrin heavy 99.4 1.5E-13 5E-18 120.0 2.0 158 130-317 18-202 (449)
189 1xi4_A Clathrin heavy chain; a 99.3 2.6E-10 8.8E-15 111.3 22.9 189 111-323 1103-1347(1630)
190 1na3_A Designed protein CTPR2; 99.3 2.1E-11 7.3E-16 83.4 11.2 85 147-231 7-91 (91)
191 1b89_A Protein (clathrin heavy 99.3 1.1E-11 3.8E-16 108.3 11.5 165 130-325 76-240 (449)
192 3mv2_B Coatomer subunit epsilo 99.3 9.4E-11 3.2E-15 98.0 16.5 155 128-295 113-290 (310)
193 2l6j_A TPR repeat-containing p 99.3 5.3E-11 1.8E-15 84.7 10.6 85 148-232 3-93 (111)
194 3ma5_A Tetratricopeptide repea 99.2 6.8E-11 2.3E-15 82.7 10.3 72 144-215 2-73 (100)
195 3n71_A Histone lysine methyltr 99.2 1.3E-10 4.4E-15 104.6 14.2 132 155-287 315-464 (490)
196 3ly7_A Transcriptional activat 99.2 3.3E-09 1.1E-13 90.3 20.8 152 176-328 187-346 (372)
197 3n71_A Histone lysine methyltr 99.2 2.3E-10 7.8E-15 103.0 12.9 134 188-322 314-465 (490)
198 3ma5_A Tetratricopeptide repea 99.2 1.9E-10 6.6E-15 80.3 9.7 72 254-325 3-74 (100)
199 2kat_A Uncharacterized protein 99.2 4.7E-10 1.6E-14 80.5 11.7 82 244-325 4-86 (115)
200 1na3_A Designed protein CTPR2; 99.1 1.6E-09 5.5E-14 73.8 12.6 76 255-330 6-81 (91)
201 2l6j_A TPR repeat-containing p 99.0 2.6E-09 9E-14 75.7 11.4 69 257-325 3-71 (111)
202 4g26_A Pentatricopeptide repea 99.0 4.7E-08 1.6E-12 88.7 22.0 170 151-328 28-213 (501)
203 3u64_A Protein TP_0956; tetrat 99.0 3.1E-08 1E-12 81.0 17.9 183 134-325 51-273 (301)
204 1klx_A Cysteine rich protein B 99.0 9.9E-09 3.4E-13 76.2 13.5 47 272-320 75-125 (138)
205 2kc7_A BFR218_protein; tetratr 99.0 4.9E-09 1.7E-13 72.8 10.6 69 153-221 4-73 (99)
206 1klx_A Cysteine rich protein B 99.0 1.9E-08 6.6E-13 74.6 13.9 121 162-299 8-136 (138)
207 2kc7_A BFR218_protein; tetratr 99.0 9E-09 3.1E-13 71.4 11.0 68 262-329 4-72 (99)
208 3bee_A Putative YFRE protein; 99.0 1.2E-08 4.1E-13 69.7 11.2 80 254-334 2-84 (93)
209 3bee_A Putative YFRE protein; 98.9 8.4E-09 2.9E-13 70.5 10.0 72 145-216 2-76 (93)
210 2uy1_A Cleavage stimulation fa 98.9 2.7E-07 9.1E-12 83.7 22.9 172 131-318 195-380 (493)
211 1pc2_A Mitochondria fission pr 98.9 2.1E-08 7.2E-13 74.0 12.0 95 130-224 13-112 (152)
212 4g26_A Pentatricopeptide repea 98.9 1E-06 3.5E-11 79.9 23.9 169 126-303 36-221 (501)
213 1pc2_A Mitochondria fission pr 98.8 6E-08 2.1E-12 71.6 11.7 91 242-332 15-111 (152)
214 3ly7_A Transcriptional activat 98.8 1.7E-07 5.7E-12 79.9 15.0 144 141-292 186-344 (372)
215 2uy1_A Cleavage stimulation fa 98.8 1E-06 3.5E-11 79.8 21.2 192 130-328 152-356 (493)
216 3qwp_A SET and MYND domain-con 98.7 8.7E-08 3E-12 85.0 12.5 115 155-270 293-425 (429)
217 2v5f_A Prolyl 4-hydroxylase su 98.7 2.2E-07 7.4E-12 65.1 11.8 77 148-224 4-87 (104)
218 3qww_A SET and MYND domain-con 98.7 1.5E-07 5E-12 83.4 12.3 100 230-330 311-425 (433)
219 3qww_A SET and MYND domain-con 98.6 1.2E-07 4.1E-12 84.0 10.2 100 194-294 309-423 (433)
220 3qwp_A SET and MYND domain-con 98.6 1.8E-07 6.2E-12 83.0 11.2 112 191-303 295-424 (429)
221 2v5f_A Prolyl 4-hydroxylase su 98.6 4.7E-07 1.6E-11 63.3 11.2 71 258-328 5-82 (104)
222 3u64_A Protein TP_0956; tetrat 98.5 4E-07 1.4E-11 74.5 9.8 86 130-215 178-272 (301)
223 1nzn_A CGI-135 protein, fissio 98.4 7.6E-06 2.6E-10 58.1 11.3 95 130-224 16-115 (126)
224 3ffl_A Anaphase-promoting comp 98.3 1.1E-05 3.9E-10 59.8 11.2 124 126-269 31-166 (167)
225 1nzn_A CGI-135 protein, fissio 98.3 8.3E-06 2.8E-10 57.9 9.9 79 254-332 31-114 (126)
226 4h7y_A Dual specificity protei 98.1 6E-05 2.1E-09 54.7 11.9 116 179-328 9-130 (161)
227 1y8m_A FIS1; mitochondria, unk 98.1 0.00019 6.6E-09 51.7 13.4 78 254-331 35-116 (144)
228 3o48_A Mitochondria fission 1 98.0 0.00027 9.3E-09 50.3 13.1 81 253-333 35-119 (134)
229 3ffl_A Anaphase-promoting comp 98.0 6.8E-05 2.3E-09 55.7 9.8 133 150-302 21-165 (167)
230 4h7y_A Dual specificity protei 97.8 0.00091 3.1E-08 48.6 13.1 120 144-306 8-141 (161)
231 4gns_B Protein CSD3, chitin bi 97.7 0.00096 3.3E-08 62.7 15.2 124 195-318 260-397 (754)
232 1y8m_A FIS1; mitochondria, unk 97.7 0.0025 8.6E-08 46.0 13.9 77 146-222 36-116 (144)
233 3o48_A Mitochondria fission 1 97.6 0.0012 4.1E-08 47.0 11.2 77 148-224 39-119 (134)
234 3txn_A 26S proteasome regulato 97.5 0.0036 1.2E-07 54.3 14.8 172 150-322 20-211 (394)
235 3txn_A 26S proteasome regulato 97.1 0.026 8.9E-07 48.9 16.0 139 184-322 20-169 (394)
236 3spa_A Mtrpol, DNA-directed RN 96.9 0.017 5.7E-07 55.9 13.8 83 150-232 128-215 (1134)
237 3spa_A Mtrpol, DNA-directed RN 96.9 0.027 9.2E-07 54.5 14.8 97 184-288 128-231 (1134)
238 4gns_B Protein CSD3, chitin bi 96.8 0.012 4.3E-07 55.3 12.2 111 131-250 265-396 (754)
239 1zbp_A Hypothetical protein VP 96.8 0.054 1.8E-06 43.8 14.1 121 158-290 6-132 (273)
240 3mkq_A Coatomer beta'-subunit; 96.7 0.067 2.3E-06 51.3 17.2 132 153-316 633-773 (814)
241 4b4t_P 26S proteasome regulato 96.7 0.22 7.4E-06 44.2 18.9 183 129-321 30-247 (445)
242 3mkq_B Coatomer subunit alpha; 96.6 0.074 2.5E-06 40.2 13.0 45 160-209 16-60 (177)
243 1zbp_A Hypothetical protein VP 96.5 0.019 6.7E-07 46.3 9.6 68 268-335 7-74 (273)
244 3mkq_A Coatomer beta'-subunit; 96.5 0.11 3.7E-06 49.8 16.7 49 156-209 659-707 (814)
245 3mkq_B Coatomer subunit alpha; 96.5 0.19 6.4E-06 38.0 16.2 108 182-317 7-114 (177)
246 4b4t_R RPN7, 26S proteasome re 96.4 0.021 7.1E-07 50.5 10.2 65 148-212 130-197 (429)
247 3kae_A CDC27, possible protein 96.4 0.19 6.6E-06 37.3 18.1 89 126-219 44-150 (242)
248 2ff4_A Probable regulatory pro 96.3 0.085 2.9E-06 45.9 13.6 111 191-320 123-233 (388)
249 3kae_A CDC27, possible protein 96.3 0.12 4.1E-06 38.4 11.8 119 194-327 13-149 (242)
250 2ff4_A Probable regulatory pro 95.9 0.66 2.2E-05 40.3 17.2 90 160-250 126-237 (388)
251 4fhn_B Nucleoporin NUP120; pro 95.9 0.19 6.5E-06 50.4 15.3 173 141-321 834-1050(1139)
252 4b4t_S RPN3, 26S proteasome re 95.8 0.021 7.1E-07 50.9 7.2 69 255-325 228-303 (523)
253 1ya0_A SMG-7 transcript varian 95.7 0.098 3.4E-06 46.9 11.2 78 151-228 154-231 (497)
254 4fhn_B Nucleoporin NUP120; pro 95.5 0.4 1.4E-05 48.1 16.0 140 154-316 817-962 (1139)
255 1ya0_A SMG-7 transcript varian 95.3 0.15 5E-06 45.8 10.7 69 260-328 154-222 (497)
256 2wpv_A GET4, UPF0363 protein Y 95.2 1.2 4E-05 37.2 16.8 155 153-321 37-217 (312)
257 3lpz_A GET4 (YOR164C homolog); 95.2 1.2 4.2E-05 37.4 21.8 154 153-320 39-215 (336)
258 1qsa_A Protein (soluble lytic 94.6 2.9 9.8E-05 38.7 18.6 123 190-320 221-347 (618)
259 4b4t_R RPN7, 26S proteasome re 94.5 0.11 3.9E-06 45.8 8.1 101 112-214 130-239 (429)
260 4b4t_S RPN3, 26S proteasome re 94.3 0.062 2.1E-06 48.0 5.8 126 158-291 145-303 (523)
261 4b4t_P 26S proteasome regulato 91.0 7.8 0.00027 34.2 22.0 155 162-319 29-204 (445)
262 1qsa_A Protein (soluble lytic 89.9 12 0.00042 34.5 20.4 183 130-316 229-437 (618)
263 4ady_A RPN2, 26S proteasome re 89.3 8.3 0.00028 37.4 13.9 150 159-319 384-551 (963)
264 1wy6_A Hypothetical protein ST 87.5 6.2 0.00021 28.3 13.4 57 266-322 99-155 (172)
265 3esl_A Checkpoint serine/threo 87.4 8.3 0.00028 29.6 11.1 48 274-321 95-144 (202)
266 4gq2_M Nucleoporin NUP120; bet 84.0 11 0.00036 37.1 12.0 27 260-286 899-925 (950)
267 4a1g_A Mitotic checkpoint seri 84.0 10 0.00036 27.6 9.7 81 238-324 48-133 (152)
268 4ady_A RPN2, 26S proteasome re 82.5 19 0.00066 35.0 12.6 101 130-232 469-575 (963)
269 4aez_C MAD3, mitotic spindle c 82.1 3.6 0.00012 32.2 6.3 79 240-324 99-182 (223)
270 3esl_A Checkpoint serine/threo 81.7 16 0.00054 28.1 16.4 121 164-289 7-146 (202)
271 1wy6_A Hypothetical protein ST 81.3 10 0.00035 27.2 7.7 52 192-244 100-151 (172)
272 4gq2_M Nucleoporin NUP120; bet 81.0 13 0.00046 36.4 11.4 81 138-218 829-933 (950)
273 2wvi_A Mitotic checkpoint seri 80.8 15 0.00051 27.2 10.4 79 239-323 44-127 (164)
274 3t5v_B Nuclear mRNA export pro 79.6 5.4 0.00019 35.2 7.4 65 261-325 179-254 (455)
275 3ax2_A Mitochondrial import re 77.7 7.5 0.00026 24.3 5.5 29 297-325 22-50 (73)
276 4aez_C MAD3, mitotic spindle c 76.8 25 0.00085 27.5 10.9 49 241-289 133-181 (223)
277 3t5x_A PCI domain-containing p 76.0 8.4 0.00029 29.8 6.8 36 257-292 13-48 (203)
278 3ax2_A Mitochondrial import re 73.3 12 0.00041 23.4 5.6 30 154-183 22-51 (73)
279 2v6y_A AAA family ATPase, P60 70.4 18 0.00063 23.1 6.7 18 160-177 22-39 (83)
280 2w2u_A Hypothetical P60 katani 69.9 14 0.00047 23.7 5.6 18 269-286 30-47 (83)
281 3re2_A Predicted protein; meni 69.4 50 0.0017 28.0 9.9 45 168-212 276-325 (472)
282 2ijq_A Hypothetical protein; s 68.0 33 0.0011 25.2 8.3 59 154-212 37-104 (161)
283 3t5x_A PCI domain-containing p 67.5 17 0.00059 28.0 6.8 52 149-200 14-70 (203)
284 2ijq_A Hypothetical protein; s 67.4 35 0.0012 25.1 8.2 60 262-321 36-104 (161)
285 3t5v_B Nuclear mRNA export pro 66.1 20 0.0007 31.6 7.7 87 130-216 141-254 (455)
286 2p58_C Putative type III secre 64.5 29 0.00099 23.2 8.6 72 241-317 23-94 (116)
287 2uwj_G Type III export protein 64.4 29 0.00099 23.2 7.4 73 241-318 22-94 (115)
288 2crb_A Nuclear receptor bindin 63.6 15 0.0005 24.0 4.6 26 151-176 17-42 (97)
289 2rpa_A Katanin P60 ATPase-cont 63.2 8 0.00027 24.5 3.3 27 261-287 15-41 (78)
290 2v6y_A AAA family ATPase, P60 63.1 20 0.0007 22.9 5.4 18 269-286 22-39 (83)
291 3myv_A SUSD superfamily protei 62.3 14 0.00048 32.6 6.1 54 234-287 164-219 (454)
292 3u84_A Menin; MLL, JUND, ledgf 61.6 79 0.0027 27.4 9.9 59 168-226 298-367 (550)
293 2crb_A Nuclear receptor bindin 60.9 18 0.00062 23.6 4.7 24 261-284 18-41 (97)
294 3qtm_A Uncharacterized protein 60.7 64 0.0022 25.9 11.6 31 131-161 101-131 (346)
295 4b4t_O 26S proteasome regulato 60.6 81 0.0028 27.1 11.5 58 155-212 82-156 (393)
296 3kez_A Putative sugar binding 60.5 15 0.00053 32.5 6.0 54 234-287 170-225 (461)
297 2cfu_A SDSA1; SDS-hydrolase, l 58.3 32 0.0011 32.0 8.0 45 187-231 453-497 (658)
298 1om2_A Protein (mitochondrial 58.2 14 0.00047 24.4 3.9 28 262-289 24-51 (95)
299 2w2u_A Hypothetical P60 katani 57.0 35 0.0012 21.8 7.6 19 159-177 29-47 (83)
300 3bu8_A Telomeric repeat-bindin 56.8 59 0.002 25.2 7.6 43 265-307 121-163 (235)
301 1om2_A Protein (mitochondrial 56.6 19 0.00064 23.8 4.3 30 153-182 24-53 (95)
302 2rpa_A Katanin P60 ATPase-cont 56.3 13 0.00046 23.5 3.5 27 186-212 15-41 (78)
303 3bu8_A Telomeric repeat-bindin 55.8 66 0.0023 24.9 7.8 38 156-193 121-158 (235)
304 3lew_A SUSD-like carbohydrate 53.2 27 0.00092 31.2 6.4 55 234-288 174-233 (495)
305 3mcx_A SUSD superfamily protei 53.1 16 0.00056 32.4 5.0 53 235-287 177-231 (477)
306 1wfd_A Hypothetical protein 15 53.0 36 0.0012 22.3 5.4 18 269-286 26-43 (93)
307 1o9d_A 14-3-3-like protein C; 52.8 88 0.003 25.1 16.5 168 150-320 9-206 (260)
308 3msv_A Nuclear import adaptor, 52.0 97 0.0033 25.3 11.6 31 131-161 148-178 (393)
309 2wvi_A Mitotic checkpoint seri 51.9 69 0.0024 23.6 13.2 49 241-289 79-127 (164)
310 3snx_A SUSD homolog, putative 51.8 26 0.00089 31.0 6.0 54 234-287 160-220 (460)
311 2br9_A 14-3-3E, 14-3-3 protein 51.7 87 0.003 24.7 17.0 168 150-320 6-201 (234)
312 3bqo_A Telomeric repeat-bindin 50.9 52 0.0018 25.1 6.4 67 241-307 94-166 (211)
313 2cpt_A SKD1 protein, vacuolar 50.6 38 0.0013 23.3 5.4 18 269-286 29-46 (117)
314 2ynq_A ESSB; membrane protein, 48.4 77 0.0026 23.2 8.9 74 241-317 24-98 (161)
315 2v6x_A Vacuolar protein sortin 46.5 53 0.0018 20.9 5.4 18 269-286 24-41 (85)
316 3bqo_A Telomeric repeat-bindin 46.5 34 0.0012 26.1 4.9 40 296-335 121-160 (211)
317 2wpv_A GET4, UPF0363 protein Y 45.7 1.3E+02 0.0044 24.9 19.3 107 126-232 24-149 (312)
318 3re2_A Predicted protein; meni 44.4 1.5E+02 0.005 25.2 10.7 44 277-320 276-324 (472)
319 2vkj_A TM1634; membrane protei 44.0 61 0.0021 20.9 5.0 25 152-176 56-80 (106)
320 1wfd_A Hypothetical protein 15 43.8 66 0.0022 21.0 7.9 32 131-177 12-43 (93)
321 3hdx_A SUSD homolog, SUSD supe 42.4 47 0.0016 29.5 6.2 54 234-287 156-226 (478)
322 4a1g_A Mitotic checkpoint seri 41.9 98 0.0033 22.5 16.7 48 242-289 85-132 (152)
323 2cwy_A Hypothetical protein TT 41.5 73 0.0025 20.9 6.4 23 157-179 9-31 (94)
324 3lvg_A Clathrin heavy chain 1; 41.4 0.96 3.3E-05 40.2 -4.7 132 130-279 185-325 (624)
325 2o8p_A 14-3-3 domain containin 40.9 1.3E+02 0.0044 23.6 19.1 164 154-321 11-197 (227)
326 3qnk_A Putative lipoprotein; a 40.1 49 0.0017 29.7 6.0 53 235-287 154-211 (517)
327 3iqu_A 14-3-3 protein sigma; s 39.9 1.4E+02 0.0047 23.6 16.0 169 149-320 8-204 (236)
328 2cwy_A Hypothetical protein TT 39.4 79 0.0027 20.7 6.4 55 264-320 7-67 (94)
329 3u84_A Menin; MLL, JUND, ledgf 39.3 1.4E+02 0.0046 26.0 7.9 95 153-263 261-363 (550)
330 3jq1_A SUSD superfamily protei 38.6 31 0.0011 30.7 4.4 53 234-286 154-208 (481)
331 2cfu_A SDSA1; SDS-hydrolase, l 38.3 65 0.0022 30.0 6.6 47 262-308 453-499 (658)
332 3uzd_A 14-3-3 protein gamma; s 38.2 1.5E+02 0.0051 23.6 16.4 167 151-320 6-202 (248)
333 3ubw_A 14-3-3E, 14-3-3 protein 37.5 1.6E+02 0.0054 23.6 18.5 169 149-320 31-227 (261)
334 2br9_A 14-3-3E, 14-3-3 protein 37.2 1.5E+02 0.0052 23.3 13.0 156 129-286 19-201 (234)
335 3lew_A SUSD-like carbohydrate 37.2 91 0.0031 27.8 7.2 30 149-178 203-232 (495)
336 3myv_A SUSD superfamily protei 36.6 98 0.0033 27.2 7.3 46 132-177 165-218 (454)
337 2ynq_A ESSB; membrane protein, 35.7 1.3E+02 0.0044 22.0 7.9 83 121-209 14-99 (161)
338 3i4g_A SUSD-like carbohydrate 35.6 78 0.0027 28.5 6.6 54 234-287 167-227 (528)
339 2npm_A 14-3-3 domain containin 34.6 1.8E+02 0.0061 23.3 19.0 168 150-320 29-226 (260)
340 3kez_A Putative sugar binding 34.1 1.1E+02 0.0036 27.0 7.1 29 149-177 196-224 (461)
341 2dl1_A Spartin; SPG20, MIT, st 32.7 1.2E+02 0.0041 20.8 6.3 16 271-286 35-50 (116)
342 2cpt_A SKD1 protein, vacuolar 32.5 58 0.002 22.4 4.0 18 194-211 29-46 (117)
343 3lvg_A Clathrin heavy chain 1; 31.7 0.053 1.8E-06 47.9 -13.9 145 147-318 52-196 (624)
344 3mcx_A SUSD superfamily protei 31.0 1.1E+02 0.0039 26.9 6.8 48 131-178 176-231 (477)
345 3ph0_C ASCG; type III secretio 30.4 84 0.0029 18.3 5.2 41 271-312 19-60 (61)
346 3ubw_A 14-3-3E, 14-3-3 protein 30.1 2.1E+02 0.0073 22.9 16.1 156 129-286 45-227 (261)
347 2npu_A FKBP12-rapamycin comple 29.9 91 0.0031 21.8 4.6 56 154-212 45-103 (126)
348 2wb7_A PT26-6P; extra chromoso 29.5 3E+02 0.01 24.5 9.7 35 198-232 454-489 (526)
349 3lxu_X Tripeptidyl-peptidase 2 28.4 5E+02 0.017 26.6 11.7 157 127-291 1119-1350(1354)
350 4a5x_A MITD1, MIT domain-conta 27.1 1.3E+02 0.0043 19.3 7.4 18 160-177 27-44 (86)
351 3snx_A SUSD homolog, putative 25.5 28 0.00096 30.8 1.8 31 148-178 190-220 (460)
352 3uzd_A 14-3-3 protein gamma; s 25.4 2.6E+02 0.0087 22.2 13.5 157 129-286 18-202 (248)
353 4gq4_A Menin; tumor suppressor 24.2 3.5E+02 0.012 23.5 10.8 84 235-318 239-329 (489)
354 3lpz_A GET4 (YOR164C homolog); 23.7 3.2E+02 0.011 22.8 25.7 160 126-286 23-215 (336)
355 2wb7_A PT26-6P; extra chromoso 23.4 3.4E+02 0.012 24.1 7.9 17 236-252 450-466 (526)
356 3hdx_A SUSD homolog, SUSD supe 23.2 1.7E+02 0.0058 25.8 6.5 30 149-178 197-226 (478)
357 1o9d_A 14-3-3-like protein C; 23.0 2.9E+02 0.01 22.1 15.7 156 129-286 22-206 (260)
358 2npu_A FKBP12-rapamycin comple 21.8 1.7E+02 0.0059 20.4 4.8 57 265-321 47-103 (126)
359 3eab_A Spastin; spastin, MIT, 21.2 1.5E+02 0.0052 19.2 4.1 14 272-285 33-46 (89)
360 2e2a_A Protein (enzyme IIA); h 21.2 1.3E+02 0.0045 20.2 4.0 28 292-319 20-47 (105)
361 1wcr_A PTS system, N, N'-diace 21.1 1.3E+02 0.0045 20.1 4.0 27 292-318 18-44 (103)
362 1g1e_B SIN3A; four-helix bundl 21.1 1.8E+02 0.006 18.8 7.5 25 130-154 9-33 (89)
363 3jys_A SUSD superfamily protei 20.9 93 0.0032 27.8 4.3 51 236-286 163-222 (499)
364 2yhe_A SEC-alkyl sulfatase; hy 26.3 21 0.00071 33.4 0.0 44 155-198 467-510 (668)
365 3qnk_A Putative lipoprotein; a 20.5 2.5E+02 0.0084 25.1 7.0 30 149-178 182-211 (517)
366 3efz_A 14-3-3 protein; 14-3-3, 20.5 2.9E+02 0.0097 22.3 6.4 53 235-287 169-226 (268)
367 2wm9_A Dedicator of cytokinesi 20.0 4E+02 0.014 23.1 8.0 26 150-175 12-37 (428)
No 1
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.95 E-value=5e-27 Score=190.94 Aligned_cols=185 Identities=19% Similarity=0.174 Sum_probs=153.4
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHc---------
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYA--------- 196 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--------- 196 (355)
+..+++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++...
T Consensus 16 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~ 95 (217)
T 2pl2_A 16 YALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRER 95 (217)
T ss_dssp HHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcc
Confidence 34459999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccC
Q 040440 197 --GESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESK 273 (355)
Q Consensus 197 --g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~ 273 (355)
|++++|+..|+++++.+|++..++..+|.++...|+ +++|+..+++ .... ++..++..+|.+|...|+
T Consensus 96 ~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~ 166 (217)
T 2pl2_A 96 GKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE--------RDKAEASLKQALALE-DTPEIRSALAELYLSMGR 166 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTC
T ss_pred cccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999 6666666655 3334 778889999999999999
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040440 274 HSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFR 319 (355)
Q Consensus 274 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 319 (355)
+++|+..|+++++.+|++..++..+|.++...|++++|+..|+++-
T Consensus 167 ~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 167 LDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999988753
No 2
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.95 E-value=8.7e-26 Score=178.70 Aligned_cols=171 Identities=19% Similarity=0.206 Sum_probs=161.3
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040440 147 NDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMA 226 (355)
Q Consensus 147 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 226 (355)
++..+|+.+|.+|...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...|++..++..++.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 040440 227 YDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLL 305 (355)
Q Consensus 227 ~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 305 (355)
+...++ ++++++.+.+ ....|.+..++..+|.+|...|++++|++.|+++++.+|.+..+|+.+|.+|..+
T Consensus 83 ~~~~~~--------~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~ 154 (184)
T 3vtx_A 83 NFMIDE--------KQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGK 154 (184)
T ss_dssp HHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHcCC--------HHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHC
Confidence 999999 6666666666 4557888999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCC
Q 040440 306 RKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 306 g~~~~A~~~~~~~l~~~p~~ 325 (355)
|++++|+.+|+++++++|++
T Consensus 155 g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 155 GLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp TCHHHHHHHHHHHHHTTHHH
T ss_pred CCHHHHHHHHHHHHhCCccC
Confidence 99999999999999999975
No 3
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.95 E-value=2e-25 Score=181.49 Aligned_cols=174 Identities=16% Similarity=0.147 Sum_probs=163.2
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040440 146 PNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVM 225 (355)
Q Consensus 146 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 225 (355)
|+++.++..+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|++..++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcc-----------CchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChH
Q 040440 226 AYDGS-----------DKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFR 293 (355)
Q Consensus 226 ~~~~~-----------~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 293 (355)
++... |+ +++|+..+++ ....|++..++..+|.+|...|++++|+..|+++++.+ +++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~--------~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~ 152 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGY--------LEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPE 152 (217)
T ss_dssp HHHHHHHTCSSHHHHHHH--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHH
T ss_pred HHHHhhhhhhhhcccccC--------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchH
Confidence 99998 77 7777777766 55589999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 294 PYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 294 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
+++.+|.++...|++++|+..|+++++++|++...
T Consensus 153 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~ 187 (217)
T 2pl2_A 153 IRSALAELYLSMGRLDEALAQYAKALEQAPKDLDL 187 (217)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 99999999999999999999999999999998655
No 4
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.94 E-value=3.5e-25 Score=194.26 Aligned_cols=218 Identities=11% Similarity=0.061 Sum_probs=188.6
Q ss_pred ccccccccchhhhhhhhhhhcc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHcCCCchH
Q 040440 107 AAAATVESTNESTKDTTSARED-VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQK-LVEAVDVIDRLIELEPNEFE 184 (355)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~ 184 (355)
...|....++..++.. +.. +++++|+..++++++.+|++..+|+.+|.++...|+ +++|+..|+++++++|++..
T Consensus 91 ~~~p~~~~a~~~lg~~---~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~ 167 (382)
T 2h6f_A 91 IYSDKFRDVYDYFRAV---LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ 167 (382)
T ss_dssp CCCHHHHHHHHHHHHH---HHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred hCChhhHHHHHHHHHH---HHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH
Confidence 3444444444444444 444 489999999999999999999999999999999997 99999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHH
Q 040440 185 WQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLL 263 (355)
Q Consensus 185 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~ 263 (355)
+|+.+|.++...|++++|+..|+++++++|++..+|+.+|.++...|+ +++|+..+++ +..+|.+..+|..
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~--------~~eAl~~~~~al~l~P~~~~a~~~ 239 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL--------WDNELQYVDQLLKEDVRNNSVWNQ 239 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------CTTHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999 6666666666 4558999999999
Q ss_pred HHHHHHH-ccCHHHH-----HHHHHHHHHhCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 040440 264 IAQIKVM-ESKHSEA-----LRVYEELVKEEPRDFRPYLCQGIIYTLLR--KKDEAEKQFEKFRRLVPRNHPYREYFVDN 335 (355)
Q Consensus 264 la~~~~~-~g~~~~A-----~~~~~~~l~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 335 (355)
+|.++.. .|.+++| +.+|++++.++|++..+|++++.++...| ++++|++.++++ +.+|++......+..+
T Consensus 240 lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~ 318 (382)
T 2h6f_A 240 RYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDI 318 (382)
T ss_dssp HHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHH
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHH
Confidence 9999999 5665777 59999999999999999999999999988 699999999988 8888875554444433
Q ss_pred H
Q 040440 336 M 336 (355)
Q Consensus 336 ~ 336 (355)
.
T Consensus 319 ~ 319 (382)
T 2h6f_A 319 Y 319 (382)
T ss_dssp H
T ss_pred H
Confidence 3
No 5
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.94 E-value=1.8e-24 Score=178.55 Aligned_cols=195 Identities=14% Similarity=0.160 Sum_probs=177.7
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 040440 127 EDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGF 206 (355)
Q Consensus 127 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 206 (355)
..+++++|+..++++++.+|++..++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..+
T Consensus 35 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 114 (243)
T 2q7f_A 35 EFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMF 114 (243)
T ss_dssp -------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHH
Confidence 33589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 040440 207 EEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELV 285 (355)
Q Consensus 207 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 285 (355)
+++++..|++..++..++.++...|+ +++|+..+++ ....+.+..++..+|.++...|++++|+..+++++
T Consensus 115 ~~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 186 (243)
T 2q7f_A 115 EKALRAGMENGDLFYMLGTVLVKLEQ--------PKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVT 186 (243)
T ss_dssp HHHHHHTCCSHHHHHHHHHHHHHTSC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999 6777776666 44567788899999999999999999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 286 KEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
+..|++..++..+|.++...|++++|+.+++++++++|++....
T Consensus 187 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 230 (243)
T 2q7f_A 187 EQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLAL 230 (243)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHH
Confidence 99999999999999999999999999999999999999885543
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=4.1e-24 Score=189.24 Aligned_cols=208 Identities=15% Similarity=0.120 Sum_probs=144.9
Q ss_pred ccccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHH
Q 040440 109 AATVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQL 187 (355)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 187 (355)
.|........++.. +... ++++|++.|+++++.+|++..+|..+|.++...|++++|+..|+++++.+|++..++.
T Consensus 131 ~p~~~~~~~~l~~~---~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 207 (388)
T 1w3b_A 131 NPDLYCVRSDLGNL---LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYI 207 (388)
T ss_dssp CTTCTHHHHHHHHH---HHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCcHHHHHHHHHH---HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 34433334444433 4433 7777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHH
Q 040440 188 LKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQ 266 (355)
Q Consensus 188 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~ 266 (355)
.+|.++...|++++|+..|++++..+|++..++..++.++...|+ +++|++.+++ ....|....++..+|.
T Consensus 208 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~l~~ 279 (388)
T 1w3b_A 208 NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL--------IDLAIDTYRRAIELQPHFPDAYCNLAN 279 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTCSSCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777 5555555555 3445666667777777
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q 040440 267 IKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHP 327 (355)
Q Consensus 267 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 327 (355)
++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|++++++.|++..
T Consensus 280 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 340 (388)
T 1w3b_A 280 ALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340 (388)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence 7777777777777777777777777777777777777777777777777777777776543
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=3.7e-24 Score=189.56 Aligned_cols=210 Identities=18% Similarity=0.112 Sum_probs=190.8
Q ss_pred cccccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHH
Q 040440 108 AAATVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQ 186 (355)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 186 (355)
..|....++..++.. +... ++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..+|++..++
T Consensus 164 ~~p~~~~~~~~l~~~---~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 240 (388)
T 1w3b_A 164 TQPNFAVAWSNLGCV---FNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HCTTCHHHHHHHHHH---HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred hCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH
Confidence 345444455555544 5545 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHH
Q 040440 187 LLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIA 265 (355)
Q Consensus 187 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la 265 (355)
..+|.++...|++++|+..|+++++.+|+++.++..++.++...|+ +++|++.+++ ....|.+...+..+|
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~l~ 312 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS--------VAEAEDCYNTALRLCPTHADSLNNLA 312 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC--------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhhCcccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 6666666666 445788899999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 266 QIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 266 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++++|++...
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a 375 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA 375 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999987554
No 8
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.93 E-value=1.6e-24 Score=190.29 Aligned_cols=198 Identities=15% Similarity=0.171 Sum_probs=172.3
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+..+++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..
T Consensus 76 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 155 (365)
T 4eqf_A 76 LKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEA 155 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHH
Confidence 44559999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHH----------HHHHhccCchHHHHHHHHHHHHHHHHh-hccCCc--hHHHHHHHHHHHHHcc
Q 040440 206 FEEILRKDPLRVEAYHGL----------VMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSD--LRDFKLLIAQIKVMES 272 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l----------~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~--~~~~~~~la~~~~~~g 272 (355)
|+++++..|++...+..+ +.++...|+ +++|+..+++ ....|. +..++..+|.+|...|
T Consensus 156 ~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g 227 (365)
T 4eqf_A 156 LKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSV--------LEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG 227 (365)
T ss_dssp HHHHHHHCHHHHCC-------------------CCHH--------HHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhh--------HHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC
Confidence 999999998776665544 888888888 6666666666 344566 7889999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHH
Q 040440 273 KHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREY 331 (355)
Q Consensus 273 ~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 331 (355)
++++|+.+|+++++.+|++..+|..+|.++...|++++|+.+|+++++++|++......
T Consensus 228 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 286 (365)
T 4eqf_A 228 EFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYN 286 (365)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999988554333
No 9
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.93 E-value=1.1e-23 Score=181.77 Aligned_cols=219 Identities=13% Similarity=-0.012 Sum_probs=190.6
Q ss_pred cccccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHH
Q 040440 108 AAATVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQ 186 (355)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 186 (355)
..|.....+..++.. .+..+ ++++|+..++++++.+|++..++..+|.++...|++++|+..++++++..|++...+
T Consensus 85 ~~~~~~~~~~~l~~~--~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 162 (330)
T 3hym_B 85 LYPSNPVSWFAVGCY--YLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPM 162 (330)
T ss_dssp HCTTSTHHHHHHHHH--HHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHH
T ss_pred hCcCCHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHH
Confidence 344444445555443 34455 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccC---CchHHHHHH
Q 040440 187 LLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKK---SDLRDFKLL 263 (355)
Q Consensus 187 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~---~~~~~~~~~ 263 (355)
..+|.++...|++++|+..++++++.+|++..++..+|.++...|+ ++++...++++++........ +....++..
T Consensus 163 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 241 (330)
T 3hym_B 163 LYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGE-WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNN 241 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccc-HHHHHHHHHHHHHHhhhccccccccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 666666777776665542222 556789999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 264 IAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 264 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
+|.+|...|++++|+.+|+++++.+|++..++..+|.++...|++++|..+|+++++++|++....
T Consensus 242 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 307 (330)
T 3hym_B 242 LGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSV 307 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHH
Confidence 999999999999999999999999999999999999999999999999999999999999886553
No 10
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.93 E-value=1.4e-23 Score=174.35 Aligned_cols=195 Identities=16% Similarity=0.120 Sum_probs=181.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 040440 128 DVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFE 207 (355)
Q Consensus 128 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 207 (355)
.+++++|+..++++++.+|++..++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+++|+
T Consensus 50 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 129 (252)
T 2ho1_A 50 RGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLL 129 (252)
T ss_dssp TTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 35889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh--hCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 040440 208 EILR--KDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEEL 284 (355)
Q Consensus 208 ~~~~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 284 (355)
++++ ..|.+..++..++.++...|+ +++|+..+++ ....+....++..+|.++...|++++|+..++++
T Consensus 130 ~~~~~~~~~~~~~~~~~la~~~~~~g~--------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 201 (252)
T 2ho1_A 130 EASQDTLYPERSRVFENLGLVSLQMKK--------PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLF 201 (252)
T ss_dssp HHTTCTTCTTHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhCccCcccHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999 888899999999999999999 6677766666 4456778899999999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHH
Q 040440 285 VKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYRE 330 (355)
Q Consensus 285 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 330 (355)
++..|.+...+..++.++...|++++|..+++++++..|++.....
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 202 AQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 9999999999999999999999999999999999999999866543
No 11
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=6.4e-24 Score=176.73 Aligned_cols=194 Identities=11% Similarity=0.088 Sum_probs=172.4
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc-------hHHHHHHHHHHHHcCC
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE-------FEWQLLKAQVQSYAGE 198 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~g~ 198 (355)
+..+++++|+..++++++.+ .+..++..+|.++...|++++|+..++++++.+|+. ..++..+|.++...|+
T Consensus 16 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 94 (258)
T 3uq3_A 16 YKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGD 94 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHccc
Confidence 34459999999999999999 999999999999999999999999999999988765 6889999999999999
Q ss_pred HHHHHHHHHHHHh--------------------------hCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-h
Q 040440 199 SEAAIKGFEEILR--------------------------KDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-E 251 (355)
Q Consensus 199 ~~~A~~~~~~~~~--------------------------~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~ 251 (355)
+++|+..|+++++ .+|.+..++..+|.++...|+ +++|+..+++ .
T Consensus 95 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~a~ 166 (258)
T 3uq3_A 95 LKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD--------WPNAVKAYTEMI 166 (258)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC--------HHHHHHHHHHHH
Confidence 9999999999999 566677888899999999998 6666666666 4
Q ss_pred ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCC
Q 040440 252 KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV------PRN 325 (355)
Q Consensus 252 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~------p~~ 325 (355)
...+.+..++..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|..+|++++++. |++
T Consensus 167 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~ 246 (258)
T 3uq3_A 167 KRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA 246 (258)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTH
T ss_pred hcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCch
Confidence 45677888999999999999999999999999999999999999999999999999999999999999998 765
Q ss_pred hhH
Q 040440 326 HPY 328 (355)
Q Consensus 326 ~~~ 328 (355)
...
T Consensus 247 ~~~ 249 (258)
T 3uq3_A 247 REI 249 (258)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.93 E-value=5e-23 Score=179.58 Aligned_cols=198 Identities=13% Similarity=0.110 Sum_probs=183.7
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+..+++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..
T Consensus 14 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 93 (359)
T 3ieg_A 14 LAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDD 93 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHH
Confidence 44569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCC---CCHHHHHHH------------HHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHH
Q 040440 206 FEEILRKDP---LRVEAYHGL------------VMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKV 269 (355)
Q Consensus 206 ~~~~~~~~p---~~~~~~~~l------------~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~ 269 (355)
|+++++.+| ++...+..+ +.++...|+ +++|++.+++ ....|.+..++..+|.++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (359)
T 3ieg_A 94 FKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGAD--------YTAAITFLDKILEVCVWDAELRELRAECFI 165 (359)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 999999999 888888777 688888888 7777777777 4567888999999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHH
Q 040440 270 MESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREY 331 (355)
Q Consensus 270 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 331 (355)
..|++++|+..++++++..|.+..++..+|.++...|++++|+..|+++++..|++......
T Consensus 166 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (359)
T 3ieg_A 166 KEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAH 227 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998664433
No 13
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.93 E-value=4.2e-23 Score=192.93 Aligned_cols=204 Identities=9% Similarity=-0.044 Sum_probs=182.8
Q ss_pred hccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHH
Q 040440 126 REDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 126 ~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 204 (355)
|... ++++|++.|+++++.+|++..+|..++.+|...|++++|++.|+++++..|++...+..+|.+|...|++++|++
T Consensus 383 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 462 (597)
T 2xpi_A 383 YLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANE 462 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 4444 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCch-HHHHHHHHHHHHHccCHHHHHHHHHH
Q 040440 205 GFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDL-RDFKLLIAQIKVMESKHSEALRVYEE 283 (355)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~ 283 (355)
+|+++++..|+++..+..++.++...|+ +++|...++++++...+....+.. ..++..+|.+|...|++++|++.|++
T Consensus 463 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (597)
T 2xpi_A 463 YLQSSYALFQYDPLLLNELGVVAFNKSD-MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541 (597)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999999999999999999998 666666666666655544445654 78999999999999999999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHH
Q 040440 284 LVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYRE 330 (355)
Q Consensus 284 ~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 330 (355)
+++.+|++..+|..+|.+|...|++++|.++|+++++++|++.....
T Consensus 542 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 588 (597)
T 2xpi_A 542 GLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASD 588 (597)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHH
Confidence 99999999999999999999999999999999999999999865533
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.92 E-value=5.6e-23 Score=177.34 Aligned_cols=216 Identities=10% Similarity=-0.064 Sum_probs=191.7
Q ss_pred cccccccchhhhhhhhhhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHcCCCchHHH
Q 040440 108 AAATVESTNESTKDTTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQ-KLVEAVDVIDRLIELEPNEFEWQ 186 (355)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~ 186 (355)
..|.....+...+.. .+..+++++|+..++++++.+|++..++..+|.++...| ++++|+.+|+++++.+|++..++
T Consensus 51 ~~p~~~~~~~~~~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 128 (330)
T 3hym_B 51 KDPFHASCLPVHIGT--LVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAW 128 (330)
T ss_dssp HCTTCTTTHHHHHHH--HHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHH
T ss_pred cCCCChhhHHHHHHH--HHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHH
Confidence 344444444433333 244569999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHH
Q 040440 187 LLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIA 265 (355)
Q Consensus 187 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la 265 (355)
..+|.++...|++++|+..|+++++..|++...+..+|.++...|+ +++|++.+++ ....+.+..++..+|
T Consensus 129 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~al~~~~~~~~~~~~l~ 200 (330)
T 3hym_B 129 IAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNN--------SKLAERFFSQALSIAPEDPFVMHEVG 200 (330)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTC--------HHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 8888888887 566788899999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhC---------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHH
Q 040440 266 QIKVMESKHSEALRVYEELVKEE---------PRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFV 333 (355)
Q Consensus 266 ~~~~~~g~~~~A~~~~~~~l~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~ 333 (355)
.++...|++++|+..++++++.. |....++..+|.++...|++++|+.+|++++++.|++......+.
T Consensus 201 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la 277 (330)
T 3hym_B 201 VVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIG 277 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 99999999999999999999876 666789999999999999999999999999999998865543333
No 15
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.92 E-value=4.7e-24 Score=187.26 Aligned_cols=208 Identities=14% Similarity=0.110 Sum_probs=179.5
Q ss_pred ccccccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHH
Q 040440 107 AAAATVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEW 185 (355)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 185 (355)
...|....++..++.. |... ++++|+..|+++++.+|++..++..+|.+|...|++++|+.+|+++++.+|++...
T Consensus 93 ~~~p~~~~~~~~lg~~---~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 169 (365)
T 4eqf_A 93 LQDPGDAEAWQFLGIT---QAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYL 169 (365)
T ss_dssp HHCTTCHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC
T ss_pred HhCcCCHHHHHHHHHH---HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHH
Confidence 3445555555566655 5444 99999999999999999999999999999999999999999999999998876665
Q ss_pred HHHH----------HHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hc
Q 040440 186 QLLK----------AQVQSYAGESEAAIKGFEEILRKDPL--RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EK 252 (355)
Q Consensus 186 ~~~l----------a~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~ 252 (355)
+..+ |.++...|++++|+.+|+++++.+|+ +..++..+|.++...|+ +++|++.+++ ..
T Consensus 170 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~ 241 (365)
T 4eqf_A 170 VKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGE--------FNRAIDAFNAALT 241 (365)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHH
Confidence 5544 89999999999999999999999999 89999999999999999 7777777666 45
Q ss_pred cCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 253 KKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 253 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
..|.+..++..+|.+|...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|++++++.|+.
T Consensus 242 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 242 VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS 314 (365)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 5788899999999999999999999999999999999999999999999999999999999999999998874
No 16
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.92 E-value=6.7e-23 Score=166.90 Aligned_cols=198 Identities=12% Similarity=0.064 Sum_probs=181.3
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHc-CCHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYA-GESEAAIK 204 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~ 204 (355)
+..+++++|+..++++++.+|++..++..+|.++...|++++|+.+++++++.+|.+..++..+|.++... |++++|+.
T Consensus 19 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~ 98 (225)
T 2vq2_A 19 MRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMA 98 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHH
Confidence 33459999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHh--hCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHH
Q 040440 205 GFEEILR--KDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVY 281 (355)
Q Consensus 205 ~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 281 (355)
.++++++ ..|.+...+..+|.++...|+ +++|+..+++ ....+.+..++..+|.++...|++++|+.++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 170 (225)
T 2vq2_A 99 YFDKALADPTYPTPYIANLNKGICSAKQGQ--------FGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYF 170 (225)
T ss_dssp HHHHHHTSTTCSCHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHcCcCCcchHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999 667778999999999999999 6677766666 4456778899999999999999999999999
Q ss_pred HHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHH
Q 040440 282 EELVKEEP-RDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREY 331 (355)
Q Consensus 282 ~~~l~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 331 (355)
+++++..| .+...+..++.++...|+.++|..+++.+.+..|++.....+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 171 KKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999 999999999999999999999999999999999998766543
No 17
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.92 E-value=4.1e-24 Score=187.47 Aligned_cols=227 Identities=9% Similarity=0.034 Sum_probs=192.6
Q ss_pred ccccccccccchhhhhhhhhhhcc-CC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc
Q 040440 105 PVAAAATVESTNESTKDTTSARED-VS-YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE 182 (355)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 182 (355)
.+...|....++..++.. +.. ++ +++|+..|+++++.+|++..+|+.+|.++...|++++|+..|+++++++|++
T Consensus 123 al~l~P~~~~a~~~~g~~---l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~ 199 (382)
T 2h6f_A 123 AIELNAANYTVWHFRRVL---LKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN 199 (382)
T ss_dssp HHHHCTTCHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred HHHhCccCHHHHHHHHHH---HHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC
Confidence 556677777777777666 444 45 9999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHH
Q 040440 183 FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFK 261 (355)
Q Consensus 183 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~ 261 (355)
..+|+.+|.++...|++++|+.+|+++++++|++..+|+.+|.++...++..+++. .+++++.+++ +...|.+..+|
T Consensus 200 ~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~--~~~el~~~~~Al~l~P~~~~a~ 277 (382)
T 2h6f_A 200 YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV--LEREVQYTLEMIKLVPHNESAW 277 (382)
T ss_dssp HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH--HHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH--HHHHHHHHHHHHHHCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999444233332 1122334433 34489999999
Q ss_pred HHHHHHHHHcc--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC--------C-HHHHHHHHHHH-HHhCCCChhHH
Q 040440 262 LLIAQIKVMES--KHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLR--------K-KDEAEKQFEKF-RRLVPRNHPYR 329 (355)
Q Consensus 262 ~~la~~~~~~g--~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g--------~-~~~A~~~~~~~-l~~~p~~~~~~ 329 (355)
..++.++...| ++++|++.++++ +.+|++..++..+|.+|.++| + +++|+++|+++ ++++|....+.
T Consensus 278 ~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w 356 (382)
T 2h6f_A 278 NYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYW 356 (382)
T ss_dssp HHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHH
Confidence 99999999988 699999999998 899999999999999999985 2 59999999999 99999876665
Q ss_pred HHHHHHHH
Q 040440 330 EYFVDNMV 337 (355)
Q Consensus 330 ~~~~~~~~ 337 (355)
..+...+.
T Consensus 357 ~~~~~~l~ 364 (382)
T 2h6f_A 357 RYIGRSLQ 364 (382)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544443
No 18
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.92 E-value=2.1e-23 Score=189.27 Aligned_cols=206 Identities=15% Similarity=0.079 Sum_probs=182.7
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKL-VEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEE 208 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 208 (355)
++++++..+++.....|.+..+++.+|.++...|++ ++|+.+|+++++.+|++..+|..+|.+|...|++++|+.+|++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 578889999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHc--------cCHHHHH
Q 040440 209 ILRKDPLRVEAYHGLVMAYDGS-DKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVME--------SKHSEAL 278 (355)
Q Consensus 209 ~~~~~p~~~~~~~~l~~~~~~~-~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~--------g~~~~A~ 278 (355)
+++.+|+ ..++..+|.++... ........+.+++|++.+++ ....|.+..++..+|.+|... |++++|+
T Consensus 163 al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 163 ALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL 241 (474)
T ss_dssp HHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 9999999 79999999999998 00011112227777777766 556888999999999999999 9999999
Q ss_pred HHHHHHHHhCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 040440 279 RVYEELVKEEP---RDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDNM 336 (355)
Q Consensus 279 ~~~~~~l~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 336 (355)
..|+++++.+| .+..+|+.+|.+|...|++++|+..|+++++++|++......+....
T Consensus 242 ~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~ 302 (474)
T 4abn_A 242 SAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLL 302 (474)
T ss_dssp HHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999999999999999865544444433
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.92 E-value=2e-22 Score=176.75 Aligned_cols=192 Identities=17% Similarity=0.177 Sum_probs=155.1
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+..+++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..
T Consensus 75 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 154 (368)
T 1fch_A 75 LQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEI 154 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34459999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHhhCCC---------------------------------------------------CHHHHHHHHHHHhccCchH
Q 040440 206 FEEILRKDPL---------------------------------------------------RVEAYHGLVMAYDGSDKKL 234 (355)
Q Consensus 206 ~~~~~~~~p~---------------------------------------------------~~~~~~~l~~~~~~~~~~~ 234 (355)
|++++...|+ +..++..+|.++...|+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~-- 232 (368)
T 1fch_A 155 LRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE-- 232 (368)
T ss_dssp HHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCC--
Confidence 8877766554 45667777777777777
Q ss_pred HHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 040440 235 NEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEK 313 (355)
Q Consensus 235 ~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 313 (355)
+++|+..+++ ....|....++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+.
T Consensus 233 ------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 306 (368)
T 1fch_A 233 ------YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE 306 (368)
T ss_dssp ------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ------HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 5555555555 344666677777888888888888888888888888888777888888888888888888888
Q ss_pred HHHHHHHhCCCC
Q 040440 314 QFEKFRRLVPRN 325 (355)
Q Consensus 314 ~~~~~l~~~p~~ 325 (355)
+|++++++.|++
T Consensus 307 ~~~~al~~~~~~ 318 (368)
T 1fch_A 307 HFLEALNMQRKS 318 (368)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHhCCCC
Confidence 888888777765
No 20
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.92 E-value=3.7e-24 Score=201.70 Aligned_cols=173 Identities=17% Similarity=0.237 Sum_probs=161.2
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 040440 144 ANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGL 223 (355)
Q Consensus 144 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 223 (355)
..|++++++.++|.+|..+|++++|+..|+++++++|++..++.++|.+|..+|++++|+..|+++++++|++..+++++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 040440 224 VMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIY 302 (355)
Q Consensus 224 ~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~ 302 (355)
|.++...|+ +++|++.+++ +...|++..++..+|.+|..+|++++|++.|+++++++|++..++.++|.++
T Consensus 84 g~~l~~~g~--------~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l 155 (723)
T 4gyw_A 84 GNTLKEMQD--------VQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCL 155 (723)
T ss_dssp HHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHcCC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHH
Confidence 999999999 5555555555 4458999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC
Q 040440 303 TLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 303 ~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
..+|++++|.+.+++++++.|+
T Consensus 156 ~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 156 QIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHTTCCTTHHHHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHhChh
Confidence 9999999999999999987553
No 21
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=1.7e-22 Score=176.27 Aligned_cols=203 Identities=16% Similarity=0.151 Sum_probs=180.1
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
...+++++|+..++++++.+|++..++..+|.++...|++++|+..++++++..|++..++..+|.++...|++++|+..
T Consensus 131 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 131 FDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHH------------HHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchH----HHHHHHHHHH
Q 040440 206 FEEILRKDPLRVEAYHG------------LVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLR----DFKLLIAQIK 268 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~------------l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~----~~~~~la~~~ 268 (355)
|+++++..|++...+.. +|.++...|+ +++|+..+++ ....+.+. ..+..+|.++
T Consensus 211 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 282 (359)
T 3ieg_A 211 VRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGR--------YTDATSKYESVMKTEPSVAEYTVRSKERICHCF 282 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 99999999999887653 3778889998 6666666666 33345544 3466799999
Q ss_pred HHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 040440 269 VMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDNM 336 (355)
Q Consensus 269 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 336 (355)
...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|+++++++|++......+....
T Consensus 283 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 283 SKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999876655544443
No 22
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.92 E-value=2.7e-23 Score=170.22 Aligned_cols=181 Identities=12% Similarity=0.079 Sum_probs=155.1
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040440 146 PNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEP-NEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLV 224 (355)
Q Consensus 146 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 224 (355)
+.++..++.+|.++...|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|+++++.+|++..++..+|
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 45678888999999999999999999999998888 77788888999999999999999999999999999888999999
Q ss_pred HHHhccCchHHHHHHHHHHHHHHHHh-hccCCchH-------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--ChHH
Q 040440 225 MAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLR-------DFKLLIAQIKVMESKHSEALRVYEELVKEEPR--DFRP 294 (355)
Q Consensus 225 ~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--~~~~ 294 (355)
.++...|+ +++|+..+++ ....|.+. .++..+|.++...|++++|+..|+++++.+|+ +..+
T Consensus 84 ~~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 155 (228)
T 4i17_A 84 AAYRDMKN--------NQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDA 155 (228)
T ss_dssp HHHHHTTC--------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHccc--------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHH
Confidence 99998888 6666666655 34456666 56888999999999999999999999999999 8899
Q ss_pred HHHHHHHHHHcCCH---------------------------HHHHHHHHHHHHhCCCChhHHHHHHH
Q 040440 295 YLCQGIIYTLLRKK---------------------------DEAEKQFEKFRRLVPRNHPYREYFVD 334 (355)
Q Consensus 295 ~~~l~~~~~~~g~~---------------------------~~A~~~~~~~l~~~p~~~~~~~~~~~ 334 (355)
++.+|.+|...|+. ++|+.+|+++++++|++......+..
T Consensus 156 ~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 222 (228)
T 4i17_A 156 LYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 99999999999988 99999999999999999766554443
No 23
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=1.3e-22 Score=183.00 Aligned_cols=197 Identities=14% Similarity=0.132 Sum_probs=180.6
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+..+++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..
T Consensus 37 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 116 (450)
T 2y4t_A 37 LAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDD 116 (450)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCH---HHHHHH------------HHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHH
Q 040440 206 FEEILRKDPLRV---EAYHGL------------VMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKV 269 (355)
Q Consensus 206 ~~~~~~~~p~~~---~~~~~l------------~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~ 269 (355)
|+++++.+|++. ..+..+ +.++...|+ +++|+..+++ ....+.+..++..+|.+|.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (450)
T 2y4t_A 117 FKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD--------YTAAIAFLDKILEVCVWDAELRELRAECFI 188 (450)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 999999999988 776655 555888888 7777777776 4557888999999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHH
Q 040440 270 MESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYRE 330 (355)
Q Consensus 270 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 330 (355)
..|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..|++++.+.|++.....
T Consensus 189 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 249 (450)
T 2y4t_A 189 KEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFA 249 (450)
T ss_dssp HTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998865543
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.91 E-value=6.4e-22 Score=167.92 Aligned_cols=193 Identities=12% Similarity=0.101 Sum_probs=170.6
Q ss_pred hccC-CHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHH
Q 040440 126 REDV-SYEEKEKEIEQHLAA--NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAA 202 (355)
Q Consensus 126 ~~~~-~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 202 (355)
+... ++++|++.+++++.. +|++..++..+|.++...|++++|+..+++ |.+..++..+|.++...|++++|
T Consensus 75 ~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A 149 (291)
T 3mkr_A 75 LASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLA 149 (291)
T ss_dssp HHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHH
Confidence 5555 899999999999986 699999999999999999999999999998 88999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHH--HHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHH
Q 040440 203 IKGFEEILRKDPLRVEAYHGLV--MAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALR 279 (355)
Q Consensus 203 ~~~~~~~~~~~p~~~~~~~~l~--~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 279 (355)
++.|+++++.+|++.......+ .++...|+ +++|+..+++ ....|.+..++..+|.++...|++++|+.
T Consensus 150 ~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~--------~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~ 221 (291)
T 3mkr_A 150 RKELKKMQDQDEDATLTQLATAWVSLAAGGEK--------LQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEG 221 (291)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTH--------HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhhCcCcHHHHHHHHHHHHHhCchH--------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999875544333 44445566 7777777776 45578899999999999999999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCChhHHHH
Q 040440 280 VYEELVKEEPRDFRPYLCQGIIYTLLRKKDE-AEKQFEKFRRLVPRNHPYREY 331 (355)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~l~~~p~~~~~~~~ 331 (355)
.|+++++.+|+++.++.++|.++...|+.++ +..+++++++++|+++....+
T Consensus 222 ~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~ 274 (291)
T 3mkr_A 222 VLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY 274 (291)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 9999999999999999999999999999976 578999999999998766543
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.91 E-value=2.1e-22 Score=173.56 Aligned_cols=196 Identities=12% Similarity=0.074 Sum_probs=173.0
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+..+++++|+..++++++.+|++..++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..
T Consensus 32 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 111 (327)
T 3cv0_A 32 LKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALAS 111 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHH--------------HH-HHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGL--------------VM-AYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKV 269 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l--------------~~-~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~ 269 (355)
++++++..|.+...+..+ +. ++...|+ +++|+..+++ ....+.+..++..+|.++.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 183 (327)
T 3cv0_A 112 LRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNE--------YRECRTLLHAALEMNPNDAQLHASLGVLYN 183 (327)
T ss_dssp HHHHHHTSTTTTTC--------------------CCTTSHHH--------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHccc--------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 999999999888777666 55 5666666 6666666666 4456778899999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 270 MESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 270 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
..|++++|+.+++++++.+|++..++..+|.++...|++++|+.+|+++++..|++....
T Consensus 184 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 243 (327)
T 3cv0_A 184 LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVM 243 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999875543
No 26
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=3.4e-22 Score=180.18 Aligned_cols=202 Identities=17% Similarity=0.144 Sum_probs=181.5
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+..+++++|+..++++++.+|.+..++..+|.+|...|++++|+..|+++++.+|++..++..+|.++...|++++|+..
T Consensus 154 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 233 (450)
T 2y4t_A 154 FGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSE 233 (450)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHH------------HHHHhccCchHHHHHHHHHHHHHHHHh-hccCCch----HHHHHHHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGL------------VMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDL----RDFKLLIAQIK 268 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l------------~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~----~~~~~~la~~~ 268 (355)
|+++++..|++...+..+ +.++...|+ +++|+..+++ ....|.+ ...+..+|.++
T Consensus 234 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~ 305 (450)
T 2y4t_A 234 VRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGR--------YTDATSKYESVMKTEPSIAEYTVRSKERICHCF 305 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 999999999999887766 889999998 6666666666 3334554 34788999999
Q ss_pred HHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 040440 269 VMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDN 335 (355)
Q Consensus 269 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 335 (355)
...|++++|+..++++++.+|++..+|..+|.++...|++++|+.+|+++++++|++......+...
T Consensus 306 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 306 SKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999986665544433
No 27
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.90 E-value=3e-22 Score=168.19 Aligned_cols=188 Identities=13% Similarity=0.103 Sum_probs=173.4
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch----HHHHHHHHHHHHcCCHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF----EWQLLKAQVQSYAGESEA 201 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~ 201 (355)
+..+++++|+..++++++.+|++..++..+|.++...|++++|+..++++++ .+.+. .++..+|.++...|++++
T Consensus 14 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~ 92 (272)
T 3u4t_A 14 FKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSL 92 (272)
T ss_dssp HTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHH
Confidence 4456999999999999999999999999999999999999999999999999 44333 358999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHH
Q 040440 202 AIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRV 280 (355)
Q Consensus 202 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 280 (355)
|+..|+++++.+|++..++..+|.++...|+ +++|+..+++ ....+....++..+|......+++++|+..
T Consensus 93 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 93 AIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN--------FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC--------HHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHccC--------HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 9999999988 566889999999999555556799999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC
Q 040440 281 YEELVKEEPRDFRPYLCQGIIYTLLRK---KDEAEKQFEKFRRLV 322 (355)
Q Consensus 281 ~~~~l~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~l~~~ 322 (355)
|+++++.+|++..++..+|.++...|+ +++|+..|++++++.
T Consensus 165 ~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 165 FVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 999999999999986
No 28
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=2e-21 Score=179.14 Aligned_cols=218 Identities=16% Similarity=0.035 Sum_probs=190.7
Q ss_pred cccccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHH
Q 040440 108 AAATVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQ 186 (355)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 186 (355)
..|. ...+..++.. +... ++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++
T Consensus 272 ~~~~-~~~~~~l~~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 347 (537)
T 3fp2_A 272 LHPT-PNSYIFLALT---LADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPY 347 (537)
T ss_dssp HCCC-HHHHHHHHHH---TCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHH
T ss_pred cCCC-chHHHHHHHH---HHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 3444 3444445544 5545 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Q 040440 187 LLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQ 266 (355)
Q Consensus 187 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~ 266 (355)
..+|.++...|++++|+..|+++++.+|++..++..+|.++...|+ ++.|...++++++..............+..+|.
T Consensus 348 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~ 426 (537)
T 3fp2_A 348 IQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGD-FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKAT 426 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 777777777777776554444444555778899
Q ss_pred HHHHc----------cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHH
Q 040440 267 IKVME----------SKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYRE 330 (355)
Q Consensus 267 ~~~~~----------g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 330 (355)
++... |++++|+..|+++++.+|++..++..+|.++...|++++|+.+|++++++.|++.....
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999 99999999999999999999999999999999999999999999999999998855543
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.90 E-value=5.5e-22 Score=173.99 Aligned_cols=200 Identities=13% Similarity=0.127 Sum_probs=172.8
Q ss_pred CCHHHHHH-HHHHHHHcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHH
Q 040440 129 VSYEEKEK-EIEQHLAANPND----IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAI 203 (355)
Q Consensus 129 ~~~~~A~~-~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 203 (355)
++|++|+. .+++++...|++ ...++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 118 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 118 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 38899999 999999888876 4568999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHH------------------------------------------
Q 040440 204 KGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRI------------------------------------------ 241 (355)
Q Consensus 204 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~------------------------------------------ 241 (355)
..|+++++.+|++..++..+|.++...|+ +++|...+
T Consensus 119 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (368)
T 1fch_A 119 SALRRCLELKPDNQTALMALAVSFTNESL-QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLF 197 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccH
Confidence 99999999999999999999999999988 55554333
Q ss_pred HHHHHHHHh-hccCCc--hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 242 EKAMERCKK-EKKKSD--LRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKF 318 (355)
Q Consensus 242 ~~Al~~~~~-~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 318 (355)
++|+..+++ ....|. ...++..+|.+|...|++++|+..|++++..+|++..++..+|.++...|++++|+.+|+++
T Consensus 198 ~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 277 (368)
T 1fch_A 198 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRA 277 (368)
T ss_dssp HHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555 344555 68889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCChhHH
Q 040440 319 RRLVPRNHPYR 329 (355)
Q Consensus 319 l~~~p~~~~~~ 329 (355)
++++|++....
T Consensus 278 l~~~~~~~~~~ 288 (368)
T 1fch_A 278 LELQPGYIRSR 288 (368)
T ss_dssp HHHCTTCHHHH
T ss_pred HHhCCCcHHHH
Confidence 99999875543
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.90 E-value=2.7e-22 Score=172.82 Aligned_cols=206 Identities=15% Similarity=0.116 Sum_probs=179.0
Q ss_pred ccccccchhhhhhhhhhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHH
Q 040440 109 AATVESTNESTKDTTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLL 188 (355)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 188 (355)
.|.....+..++.. ....+++++|+..++++++.+|++..++..+|.++...|++++|+..++++++.+|.+...+..
T Consensus 51 ~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 128 (327)
T 3cv0_A 51 APEREEAWRSLGLT--QAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSV 128 (327)
T ss_dssp CTTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC---
T ss_pred CCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence 34434444444443 2333499999999999999999999999999999999999999999999999999988877776
Q ss_pred H--------------HH-HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hc
Q 040440 189 K--------------AQ-VQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EK 252 (355)
Q Consensus 189 l--------------a~-~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~ 252 (355)
+ +. ++...|++++|+..++++++..|++..++..+|.++...|+ +++|+..+++ ..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------~~~A~~~~~~~~~ 200 (327)
T 3cv0_A 129 NLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNN--------YDSAAANLRRAVE 200 (327)
T ss_dssp -----------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHH
Confidence 6 66 68889999999999999999999999999999999999999 6667666666 44
Q ss_pred cCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 253 KKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 253 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
..+....++..+|.++...|++++|+..|+++++..|++..++..+|.++...|++++|+.+|+++++..|+
T Consensus 201 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 201 LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 578888999999999999999999999999999999999999999999999999999999999999999988
No 31
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.90 E-value=1.9e-21 Score=158.30 Aligned_cols=177 Identities=14% Similarity=0.090 Sum_probs=164.2
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 040440 144 ANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGL 223 (355)
Q Consensus 144 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 223 (355)
..|+++.++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|++.|+++++.+|++..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcc-CchHHHHHHHHHHHHHHHHh-hc--cCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 040440 224 VMAYDGS-DKKLNEVEKRIEKAMERCKK-EK--KKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQG 299 (355)
Q Consensus 224 ~~~~~~~-~~~~~~a~~~~~~Al~~~~~-~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~ 299 (355)
+.++... |+ +++|+..+++ .. ..+....++..+|.++...|++++|+..++++++..|.+..++..+|
T Consensus 83 ~~~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 154 (225)
T 2vq2_A 83 GWFLCGRLNR--------PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELA 154 (225)
T ss_dssp HHHHHTTTCC--------HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHhcCc--------HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 9999999 99 7777777766 33 45677889999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CChhH
Q 040440 300 IIYTLLRKKDEAEKQFEKFRRLVP-RNHPY 328 (355)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~ 328 (355)
.++...|++++|..+++++++..| ++...
T Consensus 155 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 184 (225)
T 2vq2_A 155 RTKMLAGQLGDADYYFKKYQSRVEVLQADD 184 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHCSCCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCHHH
Confidence 999999999999999999999999 76544
No 32
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.90 E-value=2.5e-22 Score=168.71 Aligned_cols=217 Identities=16% Similarity=0.097 Sum_probs=182.0
Q ss_pred cccccccccchhhhhhhhhhhccCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC
Q 040440 106 VAAAATVESTNESTKDTTSAREDVSYEEKEKEIEQHLAANPND----IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPN 181 (355)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 181 (355)
+...|.....+..++.. .+..+++++|+..++++++ .|.+ ..++..+|.++...|++++|+..|+++++.+|.
T Consensus 30 l~~~p~~~~~~~~l~~~--~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 106 (272)
T 3u4t_A 30 EAKKYNSPYIYNRRAVC--YYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT 106 (272)
T ss_dssp HHTTCCCSTTHHHHHHH--HHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhCCCcHHHHHHHHHH--HHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc
Confidence 33455555566666654 2334499999999999999 4433 556999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHH
Q 040440 182 EFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLV-MAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRD 259 (355)
Q Consensus 182 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~-~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~ 259 (355)
+..++..+|.++...|++++|+..|+++++.+|.+..++..+| .++... + +++|++.+++ ....|....
T Consensus 107 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~-~--------~~~A~~~~~~a~~~~p~~~~ 177 (272)
T 3u4t_A 107 RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK-E--------YVKADSSFVKVLELKPNIYI 177 (272)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT-C--------HHHHHHHHHHHHHHSTTCHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH-H--------HHHHHHHHHHHHHhCccchH
Confidence 9999999999999999999999999999999999999999999 666554 5 6666666665 445788889
Q ss_pred HHHHHHHHHHHccC---HHHHHHHHHHHHHhC---CCC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 260 FKLLIAQIKVMESK---HSEALRVYEELVKEE---PRD-----FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 260 ~~~~la~~~~~~g~---~~~A~~~~~~~l~~~---~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
.+..+|.++...|+ +++|+..|+++++.. |+. ..++..+|.+|...|++++|+.+|+++++++|++...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 257 (272)
T 3u4t_A 178 GYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKA 257 (272)
T ss_dssp HHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHH
Confidence 99999999999999 999999999999875 432 2688999999999999999999999999999999776
Q ss_pred HHHHHH
Q 040440 329 REYFVD 334 (355)
Q Consensus 329 ~~~~~~ 334 (355)
+..+..
T Consensus 258 ~~~l~~ 263 (272)
T 3u4t_A 258 IDGLKM 263 (272)
T ss_dssp HHHHC-
T ss_pred HHHhhh
Confidence 554433
No 33
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.90 E-value=1.2e-22 Score=184.29 Aligned_cols=183 Identities=17% Similarity=0.106 Sum_probs=169.3
Q ss_pred hccC-CH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHc-------
Q 040440 126 REDV-SY-EEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYA------- 196 (355)
Q Consensus 126 ~~~~-~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~------- 196 (355)
+... ++ ++|++.|+++++.+|++..+|..+|.+|...|++++|+.+|+++++.+|+ ..++..+|.++...
T Consensus 112 ~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~ 190 (474)
T 4abn_A 112 LNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDE 190 (474)
T ss_dssp HTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHH
T ss_pred HHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhh
Confidence 4444 99 99999999999999999999999999999999999999999999999998 69999999999999
Q ss_pred --CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhcc--------CchHHHHHHHHHHHHHHHHh-hccCC---chHHHHH
Q 040440 197 --GESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGS--------DKKLNEVEKRIEKAMERCKK-EKKKS---DLRDFKL 262 (355)
Q Consensus 197 --g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--------~~~~~~a~~~~~~Al~~~~~-~~~~~---~~~~~~~ 262 (355)
|++++|+..|+++++.+|++..+|+.+|.+|... |+ +++|++.+++ ....| .+..++.
T Consensus 191 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~~~ 262 (474)
T 4abn_A 191 HSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKI--------SQQALSAYAQAEKVDRKASSNPDLHL 262 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHH--------HHHHHHHHHHHHHHCGGGGGCHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccch--------HHHHHHHHHHHHHhCCCcccCHHHHH
Confidence 9999999999999999999999999999999988 77 6666666666 33467 8899999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 263 LIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEK 317 (355)
Q Consensus 263 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 317 (355)
.+|.+|...|++++|+..|+++++.+|++..++..++.++...|++++|+..+.+
T Consensus 263 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 263 NRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999986654
No 34
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.90 E-value=1.6e-21 Score=182.13 Aligned_cols=190 Identities=14% Similarity=0.036 Sum_probs=108.4
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHH----------------------------------HHHHHHHHHccCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEAL----------------------------------QTLMEVRIKSQKLVEAVDVIDRL 175 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~----------------------------------~~la~~~~~~g~~~~A~~~~~~~ 175 (355)
++++|++.|+++++.+|++..++ ..+|.+|...|++++|+++|+++
T Consensus 320 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 399 (597)
T 2xpi_A 320 RFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKS 399 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 77777777777776666554444 44555555555555555555555
Q ss_pred HHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccC
Q 040440 176 IELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKK 254 (355)
Q Consensus 176 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~ 254 (355)
++.+|.+...|..++.++...|++++|++.|+++++..|++...+..++.+|...|+ +++|++.+++ ....
T Consensus 400 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 400 STMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGN--------ILLANEYLQSSYALF 471 (597)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHC
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC
Confidence 555555444555555555555555555555555555555555555555555555554 4444444444 2334
Q ss_pred CchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q 040440 255 SDLRDFKLLIAQIKVMESKHSEALRVYEELVKE------EPRD-FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHP 327 (355)
Q Consensus 255 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 327 (355)
+.+...+..+|.+|...|++++|++.|+++++. +|++ ..+|..+|.++...|++++|+..|+++++.+|++..
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 551 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN 551 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence 555566666666666666666666666666655 3332 456666666666666666666666666666665543
No 35
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.90 E-value=5.7e-22 Score=156.65 Aligned_cols=159 Identities=18% Similarity=0.268 Sum_probs=149.5
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+..+++++|++.|+++++.+|+++.++..+|.+|...|++++|+..+++++...|+...++..+|.++...++++.|+..
T Consensus 16 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 95 (184)
T 3vtx_A 16 RTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDA 95 (184)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEEL 284 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 284 (355)
+++++..+|++..++..+|.++...|+ +++|++.+++ ....|.+..++..+|.+|..+|++++|+..|+++
T Consensus 96 ~~~a~~~~~~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 167 (184)
T 3vtx_A 96 LQRAIALNTVYADAYYKLGLVYDSMGE--------HDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKA 167 (184)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHhCC--------chhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999999999999 7777777776 5568899999999999999999999999999999
Q ss_pred HHhCCCCh
Q 040440 285 VKEEPRDF 292 (355)
Q Consensus 285 l~~~~~~~ 292 (355)
++.+|+++
T Consensus 168 l~~~p~~a 175 (184)
T 3vtx_A 168 LEKEEKKA 175 (184)
T ss_dssp HHTTHHHH
T ss_pred HhCCccCH
Confidence 99988654
No 36
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.89 E-value=2.8e-21 Score=161.54 Aligned_cols=179 Identities=12% Similarity=0.064 Sum_probs=155.4
Q ss_pred HHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--
Q 040440 142 LAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE---FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLR-- 216 (355)
Q Consensus 142 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-- 216 (355)
...+|.++..++.+|..++..|++++|+..|+++++.+|++ ..+++.+|.++...|++++|+..|+++++.+|++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 34578899999999999999999999999999999999988 8899999999999999999999999999998854
Q ss_pred -HHHHHHHHHHHhc--------cCchHHHHHHHHHHHHHHHHh-hccCCchHHHH-----------------HHHHHHHH
Q 040440 217 -VEAYHGLVMAYDG--------SDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFK-----------------LLIAQIKV 269 (355)
Q Consensus 217 -~~~~~~l~~~~~~--------~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~-----------------~~la~~~~ 269 (355)
..+++.+|.++.. .|+ +++|+..+++ ....|++.... +.+|.+|.
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~--------~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 159 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTD--------TRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYE 159 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHH--------HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccccccchh--------HHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999998 877 6666666666 33344443333 88899999
Q ss_pred HccCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCChhH
Q 040440 270 MESKHSEALRVYEELVKEEPR---DFRPYLCQGIIYTLL----------RKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 270 ~~g~~~~A~~~~~~~l~~~~~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
..|++++|+..|+++++.+|+ ...+++.+|.+|..+ |++++|+..|+++++..|++...
T Consensus 160 ~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 160 RRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 999999999999999999997 456899999999977 99999999999999999988544
No 37
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.89 E-value=4.7e-21 Score=159.05 Aligned_cols=177 Identities=12% Similarity=0.060 Sum_probs=164.8
Q ss_pred cCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 040440 144 ANPND-IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHG 222 (355)
Q Consensus 144 ~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 222 (355)
.+|.+ +.++..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|++.|+++++.+|++..++..
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 110 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN 110 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence 34554 78899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCchHHHHHHHHHHHHHHHHh-hc--cCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 040440 223 LVMAYDGSDKKLNEVEKRIEKAMERCKK-EK--KKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQG 299 (355)
Q Consensus 223 l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~ 299 (355)
++.++...|+ +++|++.+++ .. ..+....++..+|.++...|++++|+.+|+++++..|.+..++..+|
T Consensus 111 la~~~~~~g~--------~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la 182 (252)
T 2ho1_A 111 YGGFLYEQKR--------YEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMA 182 (252)
T ss_dssp HHHHHHHTTC--------HHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred HHHHHHHHhH--------HHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 9999999999 8888888877 34 56778899999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 300 IIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
.++...|++++|..+++++++..|++...
T Consensus 183 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 211 (252)
T 2ho1_A 183 DLLYKEREYVPARQYYDLFAQGGGQNARS 211 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSCCCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Confidence 99999999999999999999999987544
No 38
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.89 E-value=6e-21 Score=160.35 Aligned_cols=187 Identities=17% Similarity=0.095 Sum_probs=106.8
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
++++|+..|+++++.+|++..++..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|+++
T Consensus 58 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 137 (275)
T 1xnf_A 58 LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAF 137 (275)
T ss_dssp CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 040440 210 LRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEE 288 (355)
Q Consensus 210 ~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 288 (355)
++.+|++......++.+ ...|+ +++|+..+++ ....+..... ..++.++...++.++|+..+++++...
T Consensus 138 ~~~~~~~~~~~~~~~~~-~~~~~--------~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~ 207 (275)
T 1xnf_A 138 YQDDPNDPFRSLWLYLA-EQKLD--------EKQAKEVLKQHFEKSDKEQWG-WNIVEFYLGNISEQTLMERLKADATDN 207 (275)
T ss_dssp HHHCTTCHHHHHHHHHH-HHHHC--------HHHHHHHHHHHHHHSCCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSH
T ss_pred HHhCCCChHHHHHHHHH-HHhcC--------HHHHHHHHHHHHhcCCcchHH-HHHHHHHHHhcCHHHHHHHHHHHhccc
Confidence 55555554433333322 22233 3444444433 1112222222 234455555555566666666655444
Q ss_pred CC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040440 289 PR----DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNH 326 (355)
Q Consensus 289 ~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 326 (355)
|. +..++..+|.++...|++++|+.+|++++.++|++.
T Consensus 208 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 208 TSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred ccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 32 257889999999999999999999999999999763
No 39
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.88 E-value=5.7e-21 Score=156.28 Aligned_cols=170 Identities=16% Similarity=0.059 Sum_probs=158.1
Q ss_pred hccCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANP-NDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 204 (355)
+..+++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+.
T Consensus 18 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 97 (228)
T 4i17_A 18 LNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIA 97 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHH
Confidence 444599999999999999999 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCH-------HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCc--hHHHHHHHHHHHHHccCH
Q 040440 205 GFEEILRKDPLRV-------EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSD--LRDFKLLIAQIKVMESKH 274 (355)
Q Consensus 205 ~~~~~~~~~p~~~-------~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~--~~~~~~~la~~~~~~g~~ 274 (355)
.|+++++.+|++. .++..+|.++...|+ +++|++.+++ ....|. ....+..+|.+|...|+.
T Consensus 98 ~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 98 TLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN--------IEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc--------HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence 9999999999998 668899999999999 8888888888 566888 889999999999999988
Q ss_pred ---------------------------HHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 040440 275 ---------------------------SEALRVYEELVKEEPRDFRPYLCQGIIYT 303 (355)
Q Consensus 275 ---------------------------~~A~~~~~~~l~~~~~~~~~~~~l~~~~~ 303 (355)
++|+.+|+++++.+|++..+...++.+..
T Consensus 170 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 170 VLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999888887754
No 40
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=3.8e-21 Score=176.13 Aligned_cols=214 Identities=16% Similarity=0.036 Sum_probs=181.8
Q ss_pred ccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 040440 113 ESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQ 191 (355)
Q Consensus 113 ~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~ 191 (355)
...+..++.. +... ++++|+..++++++.+|.+..++..+|.++...|++++|+..|+++++.+|.+..++..+|.
T Consensus 270 ~~~~~~l~~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 346 (514)
T 2gw1_A 270 VNSYIYMALI---MADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLAC 346 (514)
T ss_dssp HHHHHHHHHH---HHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHH
T ss_pred HHHHHHHHHH---HHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHH
Confidence 3334444443 4444 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHH-
Q 040440 192 VQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVM- 270 (355)
Q Consensus 192 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~- 270 (355)
++...|++++|+..|+++++..|++..++..+|.++...|+ +++|...++++++..............+..+|.++..
T Consensus 347 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 425 (514)
T 2gw1_A 347 LAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKND-FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRN 425 (514)
T ss_dssp HTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTS
T ss_pred HHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999998 5555555555555443322222225589999999999
Q ss_pred --ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHH
Q 040440 271 --ESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYRE 330 (355)
Q Consensus 271 --~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 330 (355)
.|++++|+..|++++..+|++..++..+|.++...|++++|..+|+++++++|++.....
T Consensus 426 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 487 (514)
T 2gw1_A 426 PTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQ 487 (514)
T ss_dssp CCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHH
Confidence 999999999999999999999999999999999999999999999999999998755543
No 41
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.88 E-value=4.9e-21 Score=150.82 Aligned_cols=172 Identities=13% Similarity=0.109 Sum_probs=158.8
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAY 227 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 227 (355)
....+..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|++..++..++.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 040440 228 DGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLR 306 (355)
Q Consensus 228 ~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g 306 (355)
...|+ +++|++.+++ ....+....++..+|.++...|++++|+.+++++++..|.+..++..+|.++...|
T Consensus 87 ~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 158 (186)
T 3as5_A 87 VQVQK--------YDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMG 158 (186)
T ss_dssp HHHTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHhcC--------HHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcC
Confidence 99999 6666666666 44467788899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCChh
Q 040440 307 KKDEAEKQFEKFRRLVPRNHP 327 (355)
Q Consensus 307 ~~~~A~~~~~~~l~~~p~~~~ 327 (355)
++++|..+++++++..|++..
T Consensus 159 ~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 159 RHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp CHHHHHHHHHHHHHHHHCCCG
T ss_pred CHHHHHHHHHHHHHcCCCchh
Confidence 999999999999999887643
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.88 E-value=8e-21 Score=157.87 Aligned_cols=180 Identities=17% Similarity=0.177 Sum_probs=161.3
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHH
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLR-------VEAY 220 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~ 220 (355)
....+..+|.++...|++++|+.+|+++++.+ .+..++..+|.++...|++++|+..++++++..|++ ..++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 46789999999999999999999999999999 889999999999999999999999999999998876 7899
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHH-------------------HHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHH
Q 040440 221 HGLVMAYDGSDKKLNEVEKRIEKAME-------------------RCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRV 280 (355)
Q Consensus 221 ~~l~~~~~~~~~~~~~a~~~~~~Al~-------------------~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 280 (355)
..+|.++...|+ +++|...+++++. .+++ ....+....++..+|.++...|++++|+..
T Consensus 83 ~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 161 (258)
T 3uq3_A 83 ARIGNAYHKLGD-LKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKA 161 (258)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHccc-HHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999998 6666555555555 3333 336777888999999999999999999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 281 YEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 281 ~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
|+++++.+|.+..++..+|.++...|++++|+.+|+++++.+|++....
T Consensus 162 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 210 (258)
T 3uq3_A 162 YTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAY 210 (258)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHH
Confidence 9999999999999999999999999999999999999999999885543
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.87 E-value=7.8e-21 Score=156.65 Aligned_cols=173 Identities=17% Similarity=0.101 Sum_probs=143.4
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAY 227 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 227 (355)
.+..+..+|..+...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..++.++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 040440 228 DGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLR 306 (355)
Q Consensus 228 ~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g 306 (355)
...|+ +++|++.+++ ....+....++..+|.++...|++++|+..++++++..|.+..++..+|.++...|
T Consensus 102 ~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 173 (243)
T 2q7f_A 102 VVKEM--------YKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEG 173 (243)
T ss_dssp HHTTC--------HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHhcc--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcC
Confidence 99999 6777776666 44567788899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCChhH
Q 040440 307 KKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 307 ~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
++++|+.+|+++++..|++...
T Consensus 174 ~~~~A~~~~~~~~~~~~~~~~~ 195 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQDPGHADA 195 (243)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHH
T ss_pred CHHHHHHHHHHHHHhCcccHHH
Confidence 9999999999999999987554
No 44
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=4.3e-20 Score=158.20 Aligned_cols=181 Identities=13% Similarity=0.074 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-------ccCH-------HHHHHHHHHHHH-cCCCchHHHHHHHHHHHHc
Q 040440 132 EEKEKEIEQHLAANPNDIEALQTLMEVRIK-------SQKL-------VEAVDVIDRLIE-LEPNEFEWQLLKAQVQSYA 196 (355)
Q Consensus 132 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~la~~~~~~ 196 (355)
++|+..|++++..+|+++.+|+.+|..+.. .|++ ++|+..|+++++ ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 345555555555555555555555555442 2443 555555555555 3555555555555555555
Q ss_pred CCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHH-ccC
Q 040440 197 GESEAAIKGFEEILRKDPLRVE-AYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVM-ESK 273 (355)
Q Consensus 197 g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~-~g~ 273 (355)
|++++|+..|+++++..|.+.. +|..++.++.+.|+ +++|+..+++ ....+....++...+.+... .|+
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~ 184 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG--------IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC--------HHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCC
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcC--------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC
Confidence 5555555555555555555544 55555555555544 3344444433 22233333444333333222 355
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 274 HSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 274 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
+++|+.+|+++++.+|++..+|..++.++...|++++|+.+|++++.
T Consensus 185 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 231 (308)
T 2ond_A 185 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55555555555555555555555555555555555555555555555
No 45
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.87 E-value=2.8e-21 Score=182.16 Aligned_cols=170 Identities=16% Similarity=0.140 Sum_probs=152.5
Q ss_pred ccccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHH
Q 040440 109 AATVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQL 187 (355)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 187 (355)
.|....++..++.. |... ++++|++.|+++++.+|++..++.++|.+|...|++++|+..|+++++++|++..++.
T Consensus 5 ~P~~a~al~nLG~~---~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~ 81 (723)
T 4gyw_A 5 CPTHADSLNNLANI---KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 81 (723)
T ss_dssp -CHHHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCcHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 34444555555555 4444 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHH
Q 040440 188 LKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQ 266 (355)
Q Consensus 188 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~ 266 (355)
++|.++..+|++++|++.|+++++++|++..++..+|.+|...|+ +++|++.+++ +...|+...++..+|.
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~--------~~eAi~~~~~Al~l~P~~~~a~~~L~~ 153 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN--------IPEAIASYRTALKLKPDFPDAYCNLAH 153 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCChHHHhhhhh
Confidence 999999999999999999999999999999999999999999999 6666666655 4558999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCC
Q 040440 267 IKVMESKHSEALRVYEELVKEEP 289 (355)
Q Consensus 267 ~~~~~g~~~~A~~~~~~~l~~~~ 289 (355)
+|...|++++|++.++++++..+
T Consensus 154 ~l~~~g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 154 CLQIVCDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp HHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHhCh
Confidence 99999999999999999988654
No 46
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=6.5e-21 Score=174.54 Aligned_cols=194 Identities=16% Similarity=0.195 Sum_probs=179.9
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 040440 127 EDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGF 206 (355)
Q Consensus 127 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 206 (355)
..+++++|+..++++++.+|+ ..++..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..|
T Consensus 249 ~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (514)
T 2gw1_A 249 LKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDF 327 (514)
T ss_dssp HSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 344999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 040440 207 EEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELV 285 (355)
Q Consensus 207 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 285 (355)
+++++..|++..++..++.++...|+ +++|+..+++ ....+....++..+|.++...|++++|+..|++++
T Consensus 328 ~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 328 DKAKELDPENIFPYIQLACLAYRENK--------FDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHTCSSCSHHHHHHHHHTTTTTC--------HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhChhhHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999 6777776666 44567788899999999999999999999999999
Q ss_pred HhCCCChH------HHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 286 KEEPRDFR------PYLCQGIIYTL---LRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 286 ~~~~~~~~------~~~~l~~~~~~---~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
...|++.. ++..+|.++.. .|++++|+.+|++++..+|++....
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 452 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAK 452 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 99887755 99999999999 9999999999999999999885543
No 47
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.87 E-value=8.7e-21 Score=152.95 Aligned_cols=159 Identities=17% Similarity=0.128 Sum_probs=126.0
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHH----------------HHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQT----------------LMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLK 189 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 189 (355)
+..+++++|+..|+++++.+|++..+++. +|.+|...|++++|+..|+++++.+|++..++..+
T Consensus 15 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 94 (208)
T 3urz_A 15 IEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEAC 94 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 55569999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHH
Q 040440 190 AQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKV 269 (355)
Q Consensus 190 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~ 269 (355)
|.++...|++++|+..|+++++++|++..+++.+|.+|...|+ ....++...++...........++.+|.++.
T Consensus 95 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~ 168 (208)
T 3urz_A 95 AEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE------QEKKKLETDYKKLSSPTKMQYARYRDGLSKL 168 (208)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH------HHHHHHHHHHC---CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999876653 1123333333332222222334555566666
Q ss_pred HccCHHHHHHHHHHHHHhCCC
Q 040440 270 MESKHSEALRVYEELVKEEPR 290 (355)
Q Consensus 270 ~~g~~~~A~~~~~~~l~~~~~ 290 (355)
..|++++|+..|+++++++|+
T Consensus 169 ~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 169 FTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHTHHHHHHHHHHHTTTSCC
T ss_pred HccCHHHHHHHHHHHHHhCCC
Confidence 666666666666666666663
No 48
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=1.3e-20 Score=173.76 Aligned_cols=188 Identities=18% Similarity=0.084 Sum_probs=172.6
Q ss_pred CHHHHHHHHHHHHHcCCCCHH-------HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIE-------ALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAA 202 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 202 (355)
++++|+..++++++.+|++.. ++..+|.++...|++++|+..|+++++.+|+ ..++..+|.++...|++++|
T Consensus 217 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A 295 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEF 295 (537)
T ss_dssp HHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHH
T ss_pred HHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHH
Confidence 789999999999999999865 5778888999999999999999999999998 88999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHH
Q 040440 203 IKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVY 281 (355)
Q Consensus 203 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 281 (355)
+..|+++++.+|++..++..+|.++...|+ +++|+..+++ ....+....++..+|.++...|++++|+..|
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 367 (537)
T 3fp2_A 296 FKFFQKAVDLNPEYPPTYYHRGQMYFILQD--------YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFF 367 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999999 6666666666 4456778899999999999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040440 282 EELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNH 326 (355)
Q Consensus 282 ~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 326 (355)
+++++.+|++..++..+|.++...|++++|+..|+++++..|++.
T Consensus 368 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 368 NETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 999999999999999999999999999999999999999887653
No 49
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.87 E-value=1.1e-20 Score=152.40 Aligned_cols=169 Identities=13% Similarity=0.134 Sum_probs=147.5
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHh
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLL----------------KAQVQSYAGESEAAIKGFEEILR 211 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~~~~ 211 (355)
+++.+...|..+...|++++|+..|+++++.+|++..+++. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56778899999999999999999999999999999999999 99999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhC
Q 040440 212 KDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESK--HSEALRVYEELVKEE 288 (355)
Q Consensus 212 ~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~ 288 (355)
.+|++..++..+|.++...|+ +++|+..+++ +...|++..++..+|.+|...|+ .+.+...+++++...
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQ--------EKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPT 154 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCC
T ss_pred HCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999 6777777666 55689999999999999987764 456677787776433
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 289 PRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 289 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
| ....++.+|.++...|++++|+.+|+++++++|+.
T Consensus 155 ~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 155 K-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp H-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred c-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 2 33467889999999999999999999999999974
No 50
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.86 E-value=6e-21 Score=163.14 Aligned_cols=197 Identities=19% Similarity=0.181 Sum_probs=171.4
Q ss_pred ccCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCchHHHHHHH
Q 040440 127 EDVSYEEKEKEIEQHLAA--------NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL--------EPNEFEWQLLKA 190 (355)
Q Consensus 127 ~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~la 190 (355)
..+++++|+..++++++. .|....++..+|.+|...|++++|+.++++++.. .+....++..+|
T Consensus 39 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 118 (311)
T 3nf1_A 39 SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLA 118 (311)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 345999999999999984 6677889999999999999999999999999987 345566899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh--ccCCchHHH
Q 040440 191 QVQSYAGESEAAIKGFEEILRKD--------PLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE--KKKSDLRDF 260 (355)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~--~~~~~~~~~ 260 (355)
.++...|++++|+.+|+++++.. +....++..+|.++...|+ +++|...++++++.+++. ...+....+
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 197 (311)
T 3nf1_A 119 VLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK-YEEVEYYYQRALEIYQTKLGPDDPNVAKT 197 (311)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHTSCTTCHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999999999999999874 4556778999999999998 788888888888877763 345667778
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh-------------------------------------------------CCCC
Q 040440 261 KLLIAQIKVMESKHSEALRVYEELVKE-------------------------------------------------EPRD 291 (355)
Q Consensus 261 ~~~la~~~~~~g~~~~A~~~~~~~l~~-------------------------------------------------~~~~ 291 (355)
+..+|.+|...|++++|+.+++++++. .|..
T Consensus 198 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 277 (311)
T 3nf1_A 198 KNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTV 277 (311)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchH
Confidence 999999999999999999999999974 3455
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 292 FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
..++..+|.+|...|++++|+.+|++++++.|+
T Consensus 278 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 278 TTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 678999999999999999999999999998775
No 51
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.86 E-value=5.5e-21 Score=180.77 Aligned_cols=174 Identities=13% Similarity=0.102 Sum_probs=157.5
Q ss_pred hccCCHHHHHHHHHHHH--------HcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC
Q 040440 126 REDVSYEEKEKEIEQHL--------AANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG 197 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 197 (355)
...+++++|++.+++++ +.+|++..++..+|.++...|++++|+..|+++++.+|++..+++.+|.++...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 45569999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHH
Q 040440 198 ESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEA 277 (355)
Q Consensus 198 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 277 (355)
++++|+..|+++++++|++..+++.+|.++...|+ +++ ...|++|++ .+|.+..+++.+|.+|...|++++|
T Consensus 482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~-~~~-~~~~~~al~------~~P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTFPGELAPKLALAATAELAGN-TDE-HKFYQTVWS------TNDGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC-CCT-TCHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC-hHH-HHHHHHHHH------hCCchHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999 333 444444444 4889999999999999999999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 040440 278 LRVYEELVKEEPRDFRPYLCQGIIYTLLRK 307 (355)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~ 307 (355)
+..|+++++.+|++..+++++|.++...|+
T Consensus 554 ~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 554 VRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999999999999999999988766
No 52
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=8.1e-20 Score=156.50 Aligned_cols=190 Identities=10% Similarity=0.039 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchH-HHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 131 YEEKEKEIEQHLA-ANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE-WQLLKAQVQSYAGESEAAIKGFEE 208 (355)
Q Consensus 131 ~~~A~~~~~~~l~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~ 208 (355)
+++|+..|+++++ .+|++..+|..+|.++...|++++|+..|+++++..|.+.. +|..+|.++...|++++|+..|++
T Consensus 80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3999999999999 69999999999999999999999999999999999999887 899999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHhc-cCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 040440 209 ILRKDPLRVEAYHGLVMAYDG-SDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKE 287 (355)
Q Consensus 209 ~~~~~p~~~~~~~~l~~~~~~-~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 287 (355)
+++..|....++...+.+... .|+ .+.|...|++|++ ..|.+..++..++.++...|++++|+.+|++++..
T Consensus 160 a~~~~p~~~~~~~~~a~~~~~~~~~-~~~A~~~~~~al~------~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 160 AREDARTRHHVYVTAALMEYYCSKD-KSVAFKIFELGLK------KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHTSTTCCTHHHHHHHHHHHHTSCC-HHHHHHHHHHHHH------HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHhcCCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH------hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999988888777766443 576 4444444444444 45778999999999999999999999999999996
Q ss_pred ---CC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q 040440 288 ---EP-RDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHP 327 (355)
Q Consensus 288 ---~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 327 (355)
.| ....+|..++..+...|+.++|..+++++++..|++..
T Consensus 233 ~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccc
Confidence 44 36789999999999999999999999999999998643
No 53
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.86 E-value=1.3e-19 Score=147.98 Aligned_cols=179 Identities=10% Similarity=0.049 Sum_probs=147.1
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHH
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF---EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVE---AYH 221 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~ 221 (355)
.+..++.+|..+...|++++|+..|+++++..|.+. .+++.+|.++...|++++|+..|+++++.+|++.. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 467788999999999999999999999999988764 68999999999999999999999999999998764 788
Q ss_pred HHHHHHhccCch----------HHHHHHHHHHHHHHHHh-hccCCchHHHH-----------------HHHHHHHHHccC
Q 040440 222 GLVMAYDGSDKK----------LNEVEKRIEKAMERCKK-EKKKSDLRDFK-----------------LLIAQIKVMESK 273 (355)
Q Consensus 222 ~l~~~~~~~~~~----------~~~a~~~~~~Al~~~~~-~~~~~~~~~~~-----------------~~la~~~~~~g~ 273 (355)
.+|.++...+.. ...-.+.+++|+..+++ +...|+...+. ..+|.+|...|+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~ 162 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA 162 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 888888653210 00001237888888877 45555554332 578999999999
Q ss_pred HHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040440 274 HSEALRVYEELVKEEPRDF---RPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNH 326 (355)
Q Consensus 274 ~~~A~~~~~~~l~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 326 (355)
+++|+..|+++++.+|++. .+++.+|.++.++|++++|++.++++....|++.
T Consensus 163 ~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 163 WVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 9999999999999999876 6799999999999999999999999999888763
No 54
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.85 E-value=2.5e-20 Score=156.86 Aligned_cols=192 Identities=18% Similarity=0.151 Sum_probs=162.8
Q ss_pred CHHHHHHHHHHHHH--------cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCchHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLA--------ANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL--------EPNEFEWQLLKAQVQ 193 (355)
Q Consensus 130 ~~~~A~~~~~~~l~--------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~ 193 (355)
++++|+..++++++ .+|....++..+|.+|...|++++|+.+++++++. .|....++..+|.++
T Consensus 16 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (283)
T 3edt_B 16 PRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLY 95 (283)
T ss_dssp CSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 55666666666665 23667889999999999999999999999999987 345566899999999
Q ss_pred HHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh--ccCCchHHHHHH
Q 040440 194 SYAGESEAAIKGFEEILRK--------DPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE--KKKSDLRDFKLL 263 (355)
Q Consensus 194 ~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~--~~~~~~~~~~~~ 263 (355)
...|++++|+.+|++++.. +|....++..+|.++...|+ +++|...++++++.++.. ...+....++..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 174 (283)
T 3edt_B 96 GKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGK-AEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174 (283)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 9999999999999999998 45667889999999999998 888888888888887763 335667788999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhC-------------------------------------------------CCChHH
Q 040440 264 IAQIKVMESKHSEALRVYEELVKEE-------------------------------------------------PRDFRP 294 (355)
Q Consensus 264 la~~~~~~g~~~~A~~~~~~~l~~~-------------------------------------------------~~~~~~ 294 (355)
+|.+|...|++++|+.+++++++.. |....+
T Consensus 175 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (283)
T 3edt_B 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTT 254 (283)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 9999999999999999999999751 334567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 295 YLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 295 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
+..+|.+|...|++++|..+|+++++..
T Consensus 255 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 255 LRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 8899999999999999999999998753
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.85 E-value=2.7e-20 Score=165.83 Aligned_cols=200 Identities=11% Similarity=0.010 Sum_probs=173.4
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHc------CCCchHHHHHHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDI----EALQTLMEVRIKSQKLVEAVDVIDRLIEL------EPNEFEWQLLKAQVQSY 195 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~ 195 (355)
+..+++++|+..|+++++..|++. .++..+|.+|...|++++|+.+++++++. .+....++..+|.++..
T Consensus 59 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 138 (411)
T 4a1s_A 59 CNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKV 138 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHH
Confidence 444699999999999999999987 58999999999999999999999999987 45566789999999999
Q ss_pred cCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHhccCch----------------HHHHHHHHHHHHHHHHhhcc
Q 040440 196 AGESEAAIKGFEEILRK------DPLRVEAYHGLVMAYDGSDKK----------------LNEVEKRIEKAMERCKKEKK 253 (355)
Q Consensus 196 ~g~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~~~----------------~~~a~~~~~~Al~~~~~~~~ 253 (355)
.|++++|+.+|+++++. .+....++..+|.++...|+. ++.+...+++++++......
T Consensus 139 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~ 218 (411)
T 4a1s_A 139 MGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGD 218 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999998 445567889999999988762 67777777777777776655
Q ss_pred CCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 254 KSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDF------RPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 254 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
.+....++..+|.+|...|++++|+.+++++++..+... .++..+|.++...|++++|+.+|++++.+.+..
T Consensus 219 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 296 (411)
T 4a1s_A 219 RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL 296 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence 566677899999999999999999999999998766433 388999999999999999999999999887643
No 56
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.85 E-value=1.6e-19 Score=153.10 Aligned_cols=188 Identities=15% Similarity=0.133 Sum_probs=160.2
Q ss_pred hccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCchHHHHHHHHHHHHcCCHHHH
Q 040440 126 REDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL--EPNEFEWQLLKAQVQSYAGESEAA 202 (355)
Q Consensus 126 ~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A 202 (355)
|-.. ++++|+..++. .+|.+..++..++..+...|++++|++.+++++.. +|++..+++.+|.++...|++++|
T Consensus 44 yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~A 120 (291)
T 3mkr_A 44 YLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAA 120 (291)
T ss_dssp HHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 4444 89999987765 35667788899999999999999999999999876 699999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHH--HHHHHccCHHHHHH
Q 040440 203 IKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIA--QIKVMESKHSEALR 279 (355)
Q Consensus 203 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la--~~~~~~g~~~~A~~ 279 (355)
++.+++ |++..++..++.++...|+ +++|++.+++ ....|+........+ .++...|++++|+.
T Consensus 121 l~~l~~-----~~~~~~~~~l~~~~~~~g~--------~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~ 187 (291)
T 3mkr_A 121 LRTLHQ-----GDSLECMAMTVQILLKLDR--------LDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYY 187 (291)
T ss_dssp HHHHTT-----CCSHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHhC-----CCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHH
Confidence 999988 8999999999999999999 6666666666 333555544443333 34445589999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 280 VYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
+|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++....
T Consensus 188 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 188 IFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999999999999999999999999999999986653
No 57
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.85 E-value=5e-20 Score=153.95 Aligned_cols=178 Identities=12% Similarity=0.080 Sum_probs=153.4
Q ss_pred hccCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHHH----
Q 040440 126 REDVSYEEKEKEIEQHLAANPND---IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE---FEWQLLKAQVQSY---- 195 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~---- 195 (355)
+..+++++|+..|+++++.+|++ ..+++.+|.+|...|++++|+..|+++++..|++ ..+++.+|.++..
T Consensus 26 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~ 105 (261)
T 3qky_A 26 YNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPP 105 (261)
T ss_dssp HHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCC
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccc
Confidence 55569999999999999999999 9999999999999999999999999999998754 5689999999999
Q ss_pred ----cCCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHhccCchHHHHHHHHHHHHHHHHh-hcc
Q 040440 196 ----AGESEAAIKGFEEILRKDPLRVEAY-----------------HGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKK 253 (355)
Q Consensus 196 ----~g~~~~A~~~~~~~~~~~p~~~~~~-----------------~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~ 253 (355)
.|++++|+..|+++++.+|++..+. +.+|.+|...|+ +++|+..+++ ...
T Consensus 106 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~--------~~~A~~~~~~~l~~ 177 (261)
T 3qky_A 106 YELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERREL--------YEAAAVTYEAVFDA 177 (261)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHH
Confidence 9999999999999999999886655 788999999999 7777777766 333
Q ss_pred CCc---hHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHcCCHHHH
Q 040440 254 KSD---LRDFKLLIAQIKVME----------SKHSEALRVYEELVKEEPRDF---RPYLCQGIIYTLLRKKDEA 311 (355)
Q Consensus 254 ~~~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~~l~~~~~~~---~~~~~l~~~~~~~g~~~~A 311 (355)
.|+ ...++..+|.+|... |++++|+..|+++++.+|++. .+...++.++...|+++++
T Consensus 178 ~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 178 YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 444 677899999999977 999999999999999999885 4556667777776666544
No 58
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.85 E-value=3.7e-21 Score=146.63 Aligned_cols=145 Identities=14% Similarity=0.067 Sum_probs=72.4
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchH
Q 040440 155 LMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKL 234 (355)
Q Consensus 155 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 234 (355)
||.++...|++++|+..+++++..+|++...++.+|.+|...|++++|++.|+++++++|+++.+|+.+|.+|...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~-- 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN-- 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc--
Confidence 444555555555555555555555555555555555555555555555555555555555555555555444444433
Q ss_pred HHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHH-HHHHHHhCCCChHHHHHHHHHHHHcCC
Q 040440 235 NEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRV-YEELVKEEPRDFRPYLCQGIIYTLLRK 307 (355)
Q Consensus 235 ~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~~l~~~~~~~~~~~~l~~~~~~~g~ 307 (355)
+++|+..+++ ....|.+..++..+|.+|...|++++|... ++++++++|+++.++..++.++...|+
T Consensus 81 ------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 ------TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp ------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred ------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 2222222222 112233333333344444445555544443 466666666666666666666666554
No 59
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.84 E-value=1.1e-19 Score=154.45 Aligned_cols=183 Identities=14% Similarity=0.090 Sum_probs=150.7
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC------chHHHHHHHHHHHHcCCHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPN------EFEWQLLKAQVQSYAGESEAAI 203 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~ 203 (355)
++++|+..|+++ |.+|...|++++|+..|++++++.+. ...++..+|.+|...|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 477888887776 66788999999999999999987421 2457999999999999999999
Q ss_pred HHHHHHHhhCCCC------HHHHHHHHHHHhcc-CchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHH
Q 040440 204 KGFEEILRKDPLR------VEAYHGLVMAYDGS-DKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSE 276 (355)
Q Consensus 204 ~~~~~~~~~~p~~------~~~~~~l~~~~~~~-~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 276 (355)
.+|++++++.+.. ..++..+|.+|... |+ +++|+..|++|+++............++..+|.+|..+|++++
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~-~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHD-YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999999987643 45788999999996 88 8888888888888876533323335678999999999999999
Q ss_pred HHHHHHHHHHhCCCChH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q 040440 277 ALRVYEELVKEEPRDFR-------PYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHP 327 (355)
Q Consensus 277 A~~~~~~~l~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 327 (355)
|+.+|+++++..|++.. .+..+|.++..+|++++|+.+|+++++++|+...
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 99999999999887643 5789999999999999999999999999997644
No 60
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.83 E-value=3.5e-18 Score=143.65 Aligned_cols=177 Identities=15% Similarity=0.122 Sum_probs=117.7
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH----cCCHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIK----SQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSY----AGESEA 201 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~ 201 (355)
++++|+..|+++++ +++..++..+|.+|.. .+++++|+.+|+++++.+ +..++..+|.+|.. .+++++
T Consensus 21 ~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~ 96 (273)
T 1ouv_A 21 DFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNK 96 (273)
T ss_dssp CHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHH
Confidence 77777777777776 5666777777777777 777777777777777654 56667777777777 777777
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhc----cCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHH----ccC
Q 040440 202 AIKGFEEILRKDPLRVEAYHGLVMAYDG----SDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVM----ESK 273 (355)
Q Consensus 202 A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~----~g~ 273 (355)
|+.+|+++++. ++..+++.+|.+|.. .++ +++|++.+++.... .....+..+|.+|.. .++
T Consensus 97 A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~--------~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~~~~~~~~ 165 (273)
T 1ouv_A 97 ALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRD--------FKKAVEYFTKACDL-NDGDGCTILGSLYDAGRGTPKD 165 (273)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCC--------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCC
T ss_pred HHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccC--------HHHHHHHHHHHHhc-CcHHHHHHHHHHHHcCCCCCCC
Confidence 77777777765 366677777777766 666 44444444441111 145566667777776 677
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Q 040440 274 HSEALRVYEELVKEEPRDFRPYLCQGIIYTL----LRKKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 274 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~p 323 (355)
+++|+.+|+++++. ++..+++.+|.+|.. .+++++|+.+|+++++..+
T Consensus 166 ~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 166 LKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 77777777777665 345666777777777 7777777777777776644
No 61
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.83 E-value=3.5e-20 Score=175.27 Aligned_cols=175 Identities=11% Similarity=0.053 Sum_probs=160.4
Q ss_pred HcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH--------HcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 040440 143 AANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLI--------ELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDP 214 (355)
Q Consensus 143 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 214 (355)
..+|+++.+++..+ ...|++++|++.+++++ +.+|++..+++.+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 35788888877766 78999999999999999 88999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChH
Q 040440 215 LRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFR 293 (355)
Q Consensus 215 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 293 (355)
++..+++.+|.++...|+ +++|++.+++ ....|++..++..+|.+|...|++++ +..|+++++.+|++..
T Consensus 465 ~~~~a~~~lg~~~~~~g~--------~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~ 535 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGD--------YDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVIS 535 (681)
T ss_dssp CCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHH
T ss_pred chHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHH
Confidence 999999999999999999 6666666666 45588999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 294 PYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 294 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
+|+++|.++..+|++++|+..|+++++++|++....
T Consensus 536 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~ 571 (681)
T 2pzi_A 536 AAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTAR 571 (681)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHH
Confidence 999999999999999999999999999999875443
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.83 E-value=1.9e-19 Score=159.64 Aligned_cols=200 Identities=13% Similarity=0.051 Sum_probs=170.4
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHc------CCCchHHHHHHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDI----EALQTLMEVRIKSQKLVEAVDVIDRLIEL------EPNEFEWQLLKAQVQSY 195 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~ 195 (355)
+..+++++|+..|+++++..|++. .++..+|.++...|++++|+.++++++.. .+....++..+|.++..
T Consensus 20 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 99 (406)
T 3sf4_A 20 CKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV 99 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 444699999999999999999984 67899999999999999999999999877 23345689999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHhccCch-------------------HHHHHHHHHHHHHHHHh
Q 040440 196 AGESEAAIKGFEEILRKDPLR------VEAYHGLVMAYDGSDKK-------------------LNEVEKRIEKAMERCKK 250 (355)
Q Consensus 196 ~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~-------------------~~~a~~~~~~Al~~~~~ 250 (355)
.|++++|+..++++++..+.. ..++..+|.++...|+. ++.+...+++++.+++.
T Consensus 100 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 179 (406)
T 3sf4_A 100 LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTA 179 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999986532 45788999999888762 67777778888887777
Q ss_pred hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 251 EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDF------RPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 251 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
....+....++..+|.+|...|++++|+.+++++++..+... .++..+|.++...|++++|+.++++++.+.++
T Consensus 180 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 259 (406)
T 3sf4_A 180 LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 259 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 655666677899999999999999999999999998765443 38899999999999999999999999987654
Q ss_pred C
Q 040440 325 N 325 (355)
Q Consensus 325 ~ 325 (355)
.
T Consensus 260 ~ 260 (406)
T 3sf4_A 260 L 260 (406)
T ss_dssp T
T ss_pred C
Confidence 3
No 63
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.83 E-value=8.1e-19 Score=147.28 Aligned_cols=195 Identities=12% Similarity=0.072 Sum_probs=157.2
Q ss_pred ccccccccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch
Q 040440 105 PVAAAATVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF 183 (355)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 183 (355)
.+...|.....+..++.. |... ++++|+..++++++.+|++..++..+|.+|...|++++|+.+|+++++.+|++.
T Consensus 69 al~~~~~~~~~~~~la~~---~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (275)
T 1xnf_A 69 ALAIRPDMPEVFNYLGIY---LTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP 145 (275)
T ss_dssp HHHHCCCCHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHcCCCcHHHHHHHHHH---HHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence 455566666666666665 5444 999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh-ccCC----chH
Q 040440 184 EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE-KKKS----DLR 258 (355)
Q Consensus 184 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~-~~~~----~~~ 258 (355)
.....++. +...|++++|+..+++++...|.+...+. ++.++...++ .++|+..+++. ...+ ...
T Consensus 146 ~~~~~~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~ 215 (275)
T 1xnf_A 146 FRSLWLYL-AEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNIS--------EQTLMERLKADATDNTSLAEHLS 215 (275)
T ss_dssp HHHHHHHH-HHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSC--------HHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHHHHH-HHHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcC--------HHHHHHHHHHHhccccccccccc
Confidence 76666654 46779999999999999999988766654 6777777777 56666666652 2222 336
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 040440 259 DFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQF 315 (355)
Q Consensus 259 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 315 (355)
.++..+|.+|...|++++|+..|++++..+|++... .+.++..+|++++|++.+
T Consensus 216 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 216 ETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 789999999999999999999999999999877543 477888999999999887
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.83 E-value=2.2e-19 Score=154.72 Aligned_cols=200 Identities=13% Similarity=0.048 Sum_probs=168.8
Q ss_pred hccCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHc------CCCchHHHHHHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPND----IEALQTLMEVRIKSQKLVEAVDVIDRLIEL------EPNEFEWQLLKAQVQSY 195 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~ 195 (355)
+..+++++|+..++++++.+|++ ..++..+|.++...|++++|+.+++++++. .+....++..+|.++..
T Consensus 16 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 95 (338)
T 3ro2_A 16 CKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV 95 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 44569999999999999999998 467889999999999999999999999877 33445688999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHhccCch-------------------HHHHHHHHHHHHHHHHh
Q 040440 196 AGESEAAIKGFEEILRKDPLR------VEAYHGLVMAYDGSDKK-------------------LNEVEKRIEKAMERCKK 250 (355)
Q Consensus 196 ~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~-------------------~~~a~~~~~~Al~~~~~ 250 (355)
.|++++|+..++++++..+.. ..++..++.++...|+. ++.+...+++++.+.+.
T Consensus 96 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~ 175 (338)
T 3ro2_A 96 LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTA 175 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999885432 34788999999888762 66777777777777776
Q ss_pred hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 251 EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD------FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 251 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
....+....++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|+.++++++.+.++
T Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 255 (338)
T 3ro2_A 176 LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 255 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 65556667789999999999999999999999999875432 238899999999999999999999999987654
Q ss_pred C
Q 040440 325 N 325 (355)
Q Consensus 325 ~ 325 (355)
.
T Consensus 256 ~ 256 (338)
T 3ro2_A 256 L 256 (338)
T ss_dssp T
T ss_pred h
Confidence 3
No 65
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=2.3e-18 Score=156.16 Aligned_cols=195 Identities=16% Similarity=0.122 Sum_probs=160.8
Q ss_pred ccCCHHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCchHHHHHH
Q 040440 127 EDVSYEEKEKEIEQHLAA---------NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL--------EPNEFEWQLLK 189 (355)
Q Consensus 127 ~~~~~~~A~~~~~~~l~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l 189 (355)
..+++++|++.|+++++. +|....+|.++|.+|...|++++|+.++++++++ .+....++..+
T Consensus 63 ~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~ 142 (472)
T 4g1t_A 63 LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEE 142 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHH
Confidence 345999999999999875 6778889999999999999999999999999876 23456788888
Q ss_pred HHHHHHc--CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhcc---CchHHHHHHHHHHHHHHHHhhccCCchHHHHHHH
Q 040440 190 AQVQSYA--GESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGS---DKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLI 264 (355)
Q Consensus 190 a~~~~~~--g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~l 264 (355)
|.++... ++|++|+.+|+++++++|+++.++..++.++... ++ .+.++..+++|++ ..|.+..++..+
T Consensus 143 g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~-~~~al~~~~~al~------l~p~~~~~~~~l 215 (472)
T 4g1t_A 143 GWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPP-SQNAIDPLRQAIR------LNPDNQYLKVLL 215 (472)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCC-CCCTHHHHHHHHH------HCSSCHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchH-HHHHHHHHHHHhh------cCCcchHHHHHH
Confidence 8777665 4799999999999999999999999999886543 33 2334444445444 478888888887
Q ss_pred HHHHHH----ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 265 AQIKVM----ESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 265 a~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
|..+.. .|++++|++++++++..+|.+..++..+|.+|...|++++|+..|+++++..|++...
T Consensus 216 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 283 (472)
T 4g1t_A 216 ALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYL 283 (472)
T ss_dssp HHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHH
Confidence 766654 4678899999999999999999999999999999999999999999999999998554
No 66
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=1.5e-18 Score=157.38 Aligned_cols=190 Identities=19% Similarity=0.123 Sum_probs=143.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH----cCCHH
Q 040440 128 DVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIK---SQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSY----AGESE 200 (355)
Q Consensus 128 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~ 200 (355)
.+++++|+.+|+++++.+|++++++..++.++.. .++.++|++.++++++++|++..++..+|..+.. .|+++
T Consensus 151 ~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 230 (472)
T 4g1t_A 151 GNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEG 230 (472)
T ss_dssp TTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------C
T ss_pred cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHH
Confidence 3479999999999999999999999888887554 4667788888888888888888887777765544 45677
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHc--------
Q 040440 201 AAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVME-------- 271 (355)
Q Consensus 201 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~-------- 271 (355)
+|+.++++++..+|++..++..+|.+|...|+ +++|+..+++ ....|++..++..+|.+|...
T Consensus 231 ~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~ 302 (472)
T 4g1t_A 231 EGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE--------PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLR 302 (472)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHcCc--------hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHH
Confidence 88888888888888888888888888888888 5555555555 344677777777777776532
Q ss_pred -----------cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 272 -----------SKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 272 -----------g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
+.+++|+..++++++.+|.+..++..+|.++...|++++|+.+|++++++.|++
T Consensus 303 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~ 367 (472)
T 4g1t_A 303 ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367 (472)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence 335677777777777777777777777877777888888888887777777654
No 67
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.82 E-value=3.6e-18 Score=143.56 Aligned_cols=180 Identities=14% Similarity=0.066 Sum_probs=160.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH----cCCHH
Q 040440 129 VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIK----SQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSY----AGESE 200 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~ 200 (355)
+++++|+..|+++++.+ ++.++..+|.+|.. .+++++|+.+|+++++.+ +..++..+|.+|.. .++++
T Consensus 56 ~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~ 131 (273)
T 1ouv_A 56 KNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFK 131 (273)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred CCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHH
Confidence 49999999999999985 89999999999999 999999999999999874 78899999999999 99999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhc----cCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHH----cc
Q 040440 201 AAIKGFEEILRKDPLRVEAYHGLVMAYDG----SDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVM----ES 272 (355)
Q Consensus 201 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~----~g 272 (355)
+|+.+|+++++.+ +..++..++.+|.. .++ +++|+..+++.... .....+..+|.+|.. .+
T Consensus 132 ~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~--------~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 132 KAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKD--------LKKALASYDKACDL-KDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCC--------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCC--------HHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCc
Confidence 9999999999975 68899999999988 777 56666666552111 356888999999999 99
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCC
Q 040440 273 KHSEALRVYEELVKEEPRDFRPYLCQGIIYTL----LRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 273 ~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~p~~ 325 (355)
++++|+.+|+++++..+ ..+++.+|.+|.. .+++++|+.+|+++++..|++
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 99999999999999855 8899999999999 999999999999999999864
No 68
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.82 E-value=1.1e-19 Score=142.41 Aligned_cols=167 Identities=14% Similarity=0.017 Sum_probs=138.0
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040440 146 PNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVM 225 (355)
Q Consensus 146 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 225 (355)
|...+.+..+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|++++...| ++..+..++.
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~ 81 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK 81 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence 444566888999999999999999999999999999999999999999999999999999999999999 7776655554
Q ss_pred HHhcc-CchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHH
Q 040440 226 AYDGS-DKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD--FRPYLCQGIIY 302 (355)
Q Consensus 226 ~~~~~-~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~l~~~~ 302 (355)
+.... ++ ...+...+++++ ...|.+..+++.+|.++...|++++|+..|+++++.+|+. ..++..+|.++
T Consensus 82 ~~~~~~~~-~~~a~~~~~~al------~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~ 154 (176)
T 2r5s_A 82 LELHQQAA-ESPELKRLEQEL------AANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDIL 154 (176)
T ss_dssp HHHHHHHT-SCHHHHHHHHHH------HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHH
T ss_pred HHHHhhcc-cchHHHHHHHHH------HhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHH
Confidence 43221 11 112233344444 4478899999999999999999999999999999999875 56999999999
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 040440 303 TLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 303 ~~~g~~~~A~~~~~~~l~ 320 (355)
...|+.++|...|++++.
T Consensus 155 ~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 155 SALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHCSSCHHHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHHH
Confidence 999999999999999875
No 69
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.82 E-value=8.7e-19 Score=137.80 Aligned_cols=160 Identities=14% Similarity=0.152 Sum_probs=147.5
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+..+++++|+..++++++.+|++..++..+|.++...|++++|+.+++++++..|.+..++..+|.++...|++++|++.
T Consensus 19 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 98 (186)
T 3as5_A 19 AKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPL 98 (186)
T ss_dssp HHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHH
Confidence 33459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEEL 284 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 284 (355)
++++++..|++...+..+|.++...|+ +++|++.+++ ....+....++..+|.++...|++++|+.+++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 99 LIKVAEANPINFNVRFRLGVALDNLGR--------FDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCcHhHHHHHHHHHHHHHcCc--------HHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999999999 6677766666 4456778899999999999999999999999999
Q ss_pred HHhCCCChH
Q 040440 285 VKEEPRDFR 293 (355)
Q Consensus 285 l~~~~~~~~ 293 (355)
++.+|++..
T Consensus 171 ~~~~~~~~~ 179 (186)
T 3as5_A 171 NELDEGASV 179 (186)
T ss_dssp HHHHHCCCG
T ss_pred HHcCCCchh
Confidence 998886643
No 70
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.81 E-value=1.8e-19 Score=137.26 Aligned_cols=138 Identities=9% Similarity=0.030 Sum_probs=124.9
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
++++|+..+++++..+|++...++.+|.+|...|++++|+++|+++++++|++..+|..+|.++...|++++|+..|+++
T Consensus 12 ~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 91 (150)
T 4ga2_A 12 DVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRS 91 (150)
T ss_dssp HHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccC
Q 040440 210 LRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESK 273 (355)
Q Consensus 210 ~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 273 (355)
++++|+++.+++.+|.++...|+..+.+..++++|+++ .|.+..++..++.++...|+
T Consensus 92 l~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l------~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 92 VELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL------FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH------STTCHHHHHHHHHHHHTCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh------CcCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999999998223333334555544 78999999999999888775
No 71
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.81 E-value=1.1e-18 Score=147.77 Aligned_cols=169 Identities=12% Similarity=0.024 Sum_probs=151.9
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 040440 144 ANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGL 223 (355)
Q Consensus 144 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 223 (355)
..|++.+.+..+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..+++++..+|+........
T Consensus 112 ~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 112 VLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp HSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred HcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999766666666
Q ss_pred HHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--hHHHHHHHH
Q 040440 224 VMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD--FRPYLCQGI 300 (355)
Q Consensus 224 ~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~l~~ 300 (355)
+..+...++ .++|+..+++ ....|++..+++.+|.+|...|++++|+..|+++++.+|++ ..++..++.
T Consensus 192 ~~~l~~~~~--------~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~ 263 (287)
T 3qou_A 192 QIELLXQAA--------DTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQE 263 (287)
T ss_dssp HHHHHHHHT--------SCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHH
T ss_pred HHHHHhhcc--------cCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence 666666666 4455555555 45589999999999999999999999999999999999988 889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 040440 301 IYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 301 ~~~~~g~~~~A~~~~~~~l~ 320 (355)
++...|+.++|...|++++.
T Consensus 264 ~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 264 ILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999875
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.81 E-value=6.4e-19 Score=155.63 Aligned_cols=192 Identities=11% Similarity=0.030 Sum_probs=152.9
Q ss_pred hccCCHHHHHHHHHHHHHc---CCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc-------hHHHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAA---NPN---DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE-------FEWQLLKAQV 192 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~---~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~ 192 (355)
+..+++++|+..++++++. .++ ...++..+|.+|...|++++|+.+++++++..+.. ..++..+|.+
T Consensus 114 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 193 (383)
T 3ulq_A 114 LDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATN 193 (383)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHH
Confidence 3445999999999999986 233 46789999999999999999999999999874332 3478999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Q 040440 193 QSYAGESEAAIKGFEEILRKDPLR------VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQ 266 (355)
Q Consensus 193 ~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~ 266 (355)
|...|++++|+.+|+++++..+.. ..++..+|.+|...|+ ++.|...+++|+++.+.....+....++..+|.
T Consensus 194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 272 (383)
T 3ulq_A 194 FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ-YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQ 272 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 999999999999999999885432 2478899999999998 888888888888887775555777889999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHcCC---HHHHHHHHHHH
Q 040440 267 IKVMESKHSEALRVYEELVKEEP-----RDFRPYLCQGIIYTLLRK---KDEAEKQFEKF 318 (355)
Q Consensus 267 ~~~~~g~~~~A~~~~~~~l~~~~-----~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~ 318 (355)
+|...|++++|+.+++++++..+ .....+..+|.++...|+ +++|+.++++.
T Consensus 273 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 273 IHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 99999999999999999997632 222224456666666666 45555554443
No 73
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.80 E-value=1.1e-18 Score=128.64 Aligned_cols=118 Identities=15% Similarity=0.121 Sum_probs=83.5
Q ss_pred HcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 040440 143 AANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHG 222 (355)
Q Consensus 143 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 222 (355)
.++|+..+++..+|..|++.|+|++|+..|+++++.+|.+..+|..+|.++...|++++|+..|+++++++|++..+++.
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 35666677777777777777777777777777777777777777777777777777777777777777777766666555
Q ss_pred HHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 040440 223 LVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGII 301 (355)
Q Consensus 223 l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 301 (355)
+|.++ ..+|++++|+..|+++++++|++..++..++.+
T Consensus 87 lg~~~-----------------------------------------~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 87 KAACL-----------------------------------------VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHH-----------------------------------------HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHH-----------------------------------------HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 44444 445666777777777777777777777666655
No 74
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.80 E-value=3.4e-19 Score=151.43 Aligned_cols=189 Identities=13% Similarity=0.047 Sum_probs=149.5
Q ss_pred CCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc------hHHHHHHHHHHHHc
Q 040440 129 VSYEEKEKEIEQHLAANPN------DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE------FEWQLLKAQVQSYA 196 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~ 196 (355)
+++++|+..|+++++..+. ...++..+|.+|...|++++|+.+|++++++.+.. ..++..+|.+|...
T Consensus 51 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~ 130 (292)
T 1qqe_A 51 KELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEND 130 (292)
T ss_dssp TCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 4999999999999986432 26789999999999999999999999999986532 35788999999996
Q ss_pred -CCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCc-------hHHHH
Q 040440 197 -GESEAAIKGFEEILRKDPLR------VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSD-------LRDFK 261 (355)
Q Consensus 197 -g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~-------~~~~~ 261 (355)
|++++|+.+|++++++.|.+ ..++..+|.++...|+ +++|+..+++ ....+. ....+
T Consensus 131 lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 131 LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ--------YIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 99999999999999997754 4678899999999999 6666666666 222222 22368
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCChH-----HHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCC
Q 040440 262 LLIAQIKVMESKHSEALRVYEELVKEEPRDFR-----PYLCQGIIYT--LLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 262 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~-----~~~~l~~~~~--~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
..+|.++...|++++|+..|+++++++|.... .+..++..+. ..+++++|+..|++++.++|..
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 88999999999999999999999999887554 3445566554 4578999999999988887754
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=1.6e-18 Score=148.00 Aligned_cols=177 Identities=18% Similarity=0.154 Sum_probs=156.7
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---
Q 040440 145 NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL--------EPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKD--- 213 (355)
Q Consensus 145 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--- 213 (355)
+|....++..+|.++...|++++|+.+++++++. .+....++..+|.++...|++++|+.+|++++...
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 5667888999999999999999999999999985 55667789999999999999999999999999873
Q ss_pred -----CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 040440 214 -----PLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE--KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVK 286 (355)
Q Consensus 214 -----p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 286 (355)
+....++..+|.++...|+ +++|...++++++..+.. ...+....++..+|.++...|++++|+.+|+++++
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGK-YKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556788999999999998 888888888888887764 45567778899999999999999999999999998
Q ss_pred h--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 287 E--------EPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 287 ~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
. .|....++..+|.++...|++++|+.+++++++..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 225 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 225 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 7 56667789999999999999999999999999864
No 76
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.80 E-value=7e-19 Score=156.02 Aligned_cols=196 Identities=15% Similarity=0.062 Sum_probs=161.5
Q ss_pred cCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc------hHHHHHHHHHHHH
Q 040440 128 DVSYEEKEKEIEQHLAA------NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE------FEWQLLKAQVQSY 195 (355)
Q Consensus 128 ~~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~ 195 (355)
.+++++|+..+++++.. .|....++..+|.++...|++++|+.+++++++..+.. ..++..+|.++..
T Consensus 60 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (406)
T 3sf4_A 60 LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 139 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 34999999999998875 34457788999999999999999999999998875532 3478899999999
Q ss_pred cCC--------------------HHHHHHHHHHHHhhC------CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHH
Q 040440 196 AGE--------------------SEAAIKGFEEILRKD------PLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCK 249 (355)
Q Consensus 196 ~g~--------------------~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~ 249 (355)
.|+ +++|+.++++++... +....++..+|.++...|+ ++.+...+++++++..
T Consensus 140 ~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~ 218 (406)
T 3sf4_A 140 KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN-FRDAVIAHEQRLLIAK 218 (406)
T ss_dssp HHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTB-HHHHHHHHHHHHHHHH
T ss_pred cCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHH
Confidence 999 999999999988762 3334578899999999988 7888888888888877
Q ss_pred hhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040440 250 KEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD------FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 250 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 323 (355)
..........++..+|.+|...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++++.+
T Consensus 219 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 219 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 754444556678899999999999999999999998876644 66888999999999999999999999988754
Q ss_pred C
Q 040440 324 R 324 (355)
Q Consensus 324 ~ 324 (355)
.
T Consensus 299 ~ 299 (406)
T 3sf4_A 299 E 299 (406)
T ss_dssp H
T ss_pred h
Confidence 4
No 77
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.80 E-value=5.4e-19 Score=157.39 Aligned_cols=196 Identities=13% Similarity=0.077 Sum_probs=164.5
Q ss_pred cCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc------CCCchHHHHHHHHHHHH
Q 040440 128 DVSYEEKEKEIEQHLAA------NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL------EPNEFEWQLLKAQVQSY 195 (355)
Q Consensus 128 ~~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~ 195 (355)
.+++++|+..++++++. .+....++..+|.+|...|++++|+.+++++++. .+....++..+|.++..
T Consensus 99 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 99 LGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 34999999999999886 5667788999999999999999999999999887 44555688999999999
Q ss_pred cCC-----------------HHHHHHHHHHHHhhC------CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhc
Q 040440 196 AGE-----------------SEAAIKGFEEILRKD------PLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEK 252 (355)
Q Consensus 196 ~g~-----------------~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~ 252 (355)
.|+ +++|+.++++++++. +....++..+|.++...|+ +++|...+++++++.....
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGD-FQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHT
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHhcC
Confidence 999 999999999988763 2334578899999999998 7788888888888777644
Q ss_pred cCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 253 KKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD------FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 253 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
........+..+|.+|...|++++|+.+|++++...+.. ..++..+|.++...|++++|+.++++++.+.++
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 444455678899999999999999999999999876633 577889999999999999999999999887543
No 78
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=2.1e-17 Score=152.24 Aligned_cols=187 Identities=13% Similarity=0.045 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-------ccCHH-------HHHHHHHHHHH-cCCCchHHHHHHHHHHHHc
Q 040440 132 EEKEKEIEQHLAANPNDIEALQTLMEVRIK-------SQKLV-------EAVDVIDRLIE-LEPNEFEWQLLKAQVQSYA 196 (355)
Q Consensus 132 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~~~~-~~~~~~~~~~~la~~~~~~ 196 (355)
.+++..|++++..+|.++.+|..+|..+.. .|+++ +|+.+|+++++ ..|++...|..++.++...
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 478899999999999999999999999986 79987 99999999997 7999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHH-HHHccC
Q 040440 197 GESEAAIKGFEEILRKDPLRV-EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQI-KVMESK 273 (355)
Q Consensus 197 g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~-~~~~g~ 273 (355)
|++++|+..|+++++..|.+. .+|..++.++.+.|+ +++|++++++ ....+.....+...+.+ +...|+
T Consensus 335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~ 406 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG--------IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD 406 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC--------HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCC
Confidence 999999999999999999885 689999999888887 6667777666 33445555566665655 346899
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040440 274 HSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNH 326 (355)
Q Consensus 274 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 326 (355)
+++|..+|+++++.+|+++.+|..++.++...|+.++|..+|++++...|.++
T Consensus 407 ~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 407 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred hhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence 99999999999999999999999999999999999999999999999877654
No 79
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.79 E-value=6.8e-18 Score=156.84 Aligned_cols=163 Identities=10% Similarity=0.028 Sum_probs=133.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEE 208 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 208 (355)
+++++|++.++++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|++.|++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHc---cCHHHHHHHHHHH
Q 040440 209 ILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVME---SKHSEALRVYEEL 284 (355)
Q Consensus 209 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~~ 284 (355)
+++.+|++..++..+|.++...|+ +++|++.+++ ....+.+..++..+|.++... |++++|++.|+++
T Consensus 83 al~~~p~~~~~~~~la~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 83 ASDAAPEHPGIALWLGHALEDAGQ--------AEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 999999999999999999999999 6666666666 445788888999999999999 9999999999999
Q ss_pred HHhCCCChHHHHHHH
Q 040440 285 VKEEPRDFRPYLCQG 299 (355)
Q Consensus 285 l~~~~~~~~~~~~l~ 299 (355)
++.+|.+...+..++
T Consensus 155 l~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 155 VAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHTCCCSCHHHHTT
T ss_pred HhcCCcccChHHHhC
Confidence 999998888777766
No 80
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.79 E-value=5.1e-18 Score=145.21 Aligned_cols=197 Identities=11% Similarity=-0.018 Sum_probs=157.3
Q ss_pred CHHHHHHHHHHHHHcCC--------CC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc------hHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANP--------ND---IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE------FEWQLLKAQV 192 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p--------~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~ 192 (355)
++++|.++++++.+..+ +. ...+...+.+|...|++++|+..|+++++..+.. ..++..+|.+
T Consensus 6 ~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~ 85 (307)
T 2ifu_A 6 KISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMM 85 (307)
T ss_dssp HHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55666666666654322 11 2245556788999999999999999999875422 3478899999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Q 040440 193 QSYAGESEAAIKGFEEILRKDPL--R----VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQ 266 (355)
Q Consensus 193 ~~~~g~~~~A~~~~~~~~~~~p~--~----~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~ 266 (355)
|...|++++|+.+|++++++.+. + ..++..+|.+|.. |+ ++.|+..|++|++++...........++..+|.
T Consensus 86 ~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~-~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~ 163 (307)
T 2ifu_A 86 LKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LD-LSKAVHLYQQAAAVFENEERLRQAAELIGKASR 163 (307)
T ss_dssp HHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CC-HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 99999999999999999988532 2 3568899999988 77 888889999999888774443445678999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 267 IKVMESKHSEALRVYEELVKEEPRD------FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 267 ~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
+|..+|++++|+.+|++++...+.+ ...+..+|.++..+|++++|+.+|++++ ++|+.....
T Consensus 164 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~ 231 (307)
T 2ifu_A 164 LLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSE 231 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCH
Confidence 9999999999999999999876543 3478889999999999999999999999 999764433
No 81
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.79 E-value=9.3e-19 Score=144.49 Aligned_cols=194 Identities=9% Similarity=-0.005 Sum_probs=169.7
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHH-------HHHHHHccCHHHHHHHHHHHHHcCCCch---------------
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTL-------MEVRIKSQKLVEAVDVIDRLIELEPNEF--------------- 183 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------- 183 (355)
+...++.+|.+.|.++++.+|+..++|..+ +.++...++..+++..+++.+.+.|...
T Consensus 17 ~~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 17 MLPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred ccCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 334599999999999999999999999999 8999999999999999999999766433
Q ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCch
Q 040440 184 ------EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDL 257 (355)
Q Consensus 184 ------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~ 257 (355)
+.+..++.++...|+|++|.+.|+.++...|++. ..+.++.++...++ +++|+..++.....++.
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r--------~~dA~~~l~~a~~~~d~ 167 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAER--------WTDVIDQVKSAGKWPDK 167 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTC--------HHHHHHHHTTGGGCSCH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCC--------HHHHHHHHHHhhccCCc
Confidence 3455688999999999999999999999999888 99999999999999 99999998875444322
Q ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 258 ---RDFKLLIAQIKVMESKHSEALRVYEELVKEE--PR-DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 258 ---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
..+++.+|.++..+|++++|+..|++++... |. ...+++.+|.++.++|+.++|...|++++..+|+ ....
T Consensus 168 ~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~ 244 (282)
T 4f3v_A 168 FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVA 244 (282)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHH
Confidence 4579999999999999999999999998544 44 5578999999999999999999999999999998 5543
No 82
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.79 E-value=1.4e-18 Score=149.63 Aligned_cols=196 Identities=15% Similarity=0.064 Sum_probs=165.1
Q ss_pred cCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc------hHHHHHHHHHHHH
Q 040440 128 DVSYEEKEKEIEQHLAA------NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE------FEWQLLKAQVQSY 195 (355)
Q Consensus 128 ~~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~ 195 (355)
.+++++|+..++++++. .+....++..+|.++...|++++|+..++++++..+.. ..++..+|.++..
T Consensus 56 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 56 LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 135 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 34999999999999875 44457789999999999999999999999998874432 2378899999999
Q ss_pred cCC--------------------HHHHHHHHHHHHhhC------CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHH
Q 040440 196 AGE--------------------SEAAIKGFEEILRKD------PLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCK 249 (355)
Q Consensus 196 ~g~--------------------~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~ 249 (355)
.|+ +++|+..+++++... +....++..++.++...|+ ++.+...++++++...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN-FRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHH
Confidence 999 999999999988762 2334578899999999998 8888888888888877
Q ss_pred hhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040440 250 KEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD------FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 250 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 323 (355)
...........+..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|..++++++.+.+
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 755555556689999999999999999999999999876544 67889999999999999999999999998765
Q ss_pred C
Q 040440 324 R 324 (355)
Q Consensus 324 ~ 324 (355)
.
T Consensus 295 ~ 295 (338)
T 3ro2_A 295 E 295 (338)
T ss_dssp H
T ss_pred h
Confidence 3
No 83
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.79 E-value=6.1e-18 Score=157.16 Aligned_cols=157 Identities=13% Similarity=-0.005 Sum_probs=129.5
Q ss_pred ccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHH
Q 040440 162 SQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRI 241 (355)
Q Consensus 162 ~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~ 241 (355)
.|++++|+..|+++++.+|++..++..+|.++...|++++|++.|+++++.+|++..++..+|.++...|+ +
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------~ 73 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQR--------H 73 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTC--------H
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--------H
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred HHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc---CCHHHHHHHHHH
Q 040440 242 EKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLL---RKKDEAEKQFEK 317 (355)
Q Consensus 242 ~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~ 317 (355)
++|++.+++ ....+.+...+..+|.+|...|++++|++.|+++++.+|++..++..+|.++... |++++|.+.+++
T Consensus 74 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 74 AEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 666666666 4457888999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHhCCCCh
Q 040440 318 FRRLVPRNH 326 (355)
Q Consensus 318 ~l~~~p~~~ 326 (355)
+++.+|++.
T Consensus 154 al~~~p~~~ 162 (568)
T 2vsy_A 154 AVAQGVGAV 162 (568)
T ss_dssp HHHHTCCCS
T ss_pred HHhcCCccc
Confidence 999999863
No 84
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.78 E-value=4e-18 Score=150.49 Aligned_cols=171 Identities=11% Similarity=0.048 Sum_probs=149.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHc---CCC---chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------CHH
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIEL---EPN---EFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPL-------RVE 218 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~ 218 (355)
++.+|..+...|++++|+.+|+++++. .++ ...++..+|.+|...|++++|+.++++++++.+. ...
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 445999999999999999999999987 233 4468999999999999999999999999998443 245
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hC-CCCh
Q 040440 219 AYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVK-----EE-PRDF 292 (355)
Q Consensus 219 ~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-----~~-~~~~ 292 (355)
++..+|.+|...|+ ++.|...+++|+++.++....+....++..+|.+|...|++++|+.+|+++++ .+ |...
T Consensus 186 ~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 186 CHSLFATNFLDLKQ-YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 78899999999998 88888899999988887655566667899999999999999999999999998 45 6678
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040440 293 RPYLCQGIIYTLLRKKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 323 (355)
.++..+|.++...|++++|..++++++++.+
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999998754
No 85
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.78 E-value=6.4e-18 Score=124.44 Aligned_cols=118 Identities=17% Similarity=0.246 Sum_probs=99.4
Q ss_pred HHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhcc
Q 040440 174 RLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKK 253 (355)
Q Consensus 174 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~ 253 (355)
++..++|+....+..+|..++..|+|++|++.|+++++.+|++..++..+|.+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~--------------------------- 56 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAAC--------------------------- 56 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH---------------------------
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhH---------------------------
Confidence 34456788888888889889999999999999999888888877766655544
Q ss_pred CCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHH
Q 040440 254 KSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYF 332 (355)
Q Consensus 254 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 332 (355)
|..+|++++|+..|+++++++|++..+|+.+|.++..+|++++|+..|+++++++|++......+
T Consensus 57 --------------~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 57 --------------LTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp --------------HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred --------------HHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 45668889999999999999999999999999999999999999999999999999997665443
No 86
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.77 E-value=2.2e-17 Score=134.62 Aligned_cols=159 Identities=16% Similarity=0.174 Sum_probs=136.4
Q ss_pred hccCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchH---HHHHHHHHHHH----
Q 040440 126 REDVSYEEKEKEIEQHLAANPND---IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE---WQLLKAQVQSY---- 195 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~la~~~~~---- 195 (355)
+..+++++|+..|+++++..|++ ..+++.+|.+|...|++++|+..|+++++.+|++.. +++.+|.++..
T Consensus 15 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~ 94 (225)
T 2yhc_A 15 LQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDS 94 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhh
Confidence 55569999999999999998876 478999999999999999999999999999998764 78899988876
Q ss_pred --------------cCCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHhccCchHHHHHHHHHHH
Q 040440 196 --------------AGESEAAIKGFEEILRKDPLRVEAY-----------------HGLVMAYDGSDKKLNEVEKRIEKA 244 (355)
Q Consensus 196 --------------~g~~~~A~~~~~~~~~~~p~~~~~~-----------------~~l~~~~~~~~~~~~~a~~~~~~A 244 (355)
.|++++|+..|+++++.+|++..++ ..+|.+|...|+ +++|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~--------~~~A 166 (225)
T 2yhc_A 95 ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA--------WVAV 166 (225)
T ss_dssp -------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------HHHH
T ss_pred hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--------HHHH
Confidence 5799999999999999999987554 567888888888 7777
Q ss_pred HHHHHh-hccCCch---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh
Q 040440 245 MERCKK-EKKKSDL---RDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDF 292 (355)
Q Consensus 245 l~~~~~-~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 292 (355)
+..+++ +...|+. ..++..+|.+|.++|++++|++.++++....|++.
T Consensus 167 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 167 VNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 777766 3444544 46799999999999999999999999999888654
No 87
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.77 E-value=1.8e-18 Score=131.11 Aligned_cols=115 Identities=17% Similarity=0.132 Sum_probs=91.6
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHH
Q 040440 170 DVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCK 249 (355)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~ 249 (355)
..+++++.++|++..+++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~---------------------- 80 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIY---------------------- 80 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH----------------------
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----------------------
Confidence 4456666777777788888888888888888888888888888887777666555444
Q ss_pred hhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 250 KEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 250 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
...|++++|+..|+++++++|+++.+|+++|.+|..+|++++|+..|++++++.|+.
T Consensus 81 -------------------~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 81 -------------------QIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp -------------------HHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred -------------------HHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 556778888888888888888888888888888888888888888888888888864
No 88
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.76 E-value=5.7e-16 Score=131.49 Aligned_cols=189 Identities=10% Similarity=0.042 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC--C
Q 040440 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQK----------LVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG--E 198 (355)
Q Consensus 131 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~ 198 (355)
-++|+..+++++..+|++..+|+..+.+....|+ +++++.++++++..+|++..+|...+.++...| +
T Consensus 46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence 3578888888888888888888888888877665 678888888888888888888888888888888 4
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHc-------
Q 040440 199 SEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVME------- 271 (355)
Q Consensus 199 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~------- 271 (355)
+++++.+++++++.+|.|..+|...+.+....|...++++..+++++ ..++.+..+|..++.++...
T Consensus 126 ~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I------~~~p~N~SAW~~R~~ll~~l~~~~~~~ 199 (331)
T 3dss_A 126 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLI------TRNFSNYSSWHYRSCLLPQLHPQPDSG 199 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH------HHCSCCHHHHHHHHHHHHHHSCCC---
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHH------HHCCCCHHHHHHHHHHHHHhhhccccc
Confidence 78888888888888888888888888888777763344444444444 34788888888888877766
Q ss_pred -------cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCC
Q 040440 272 -------SKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLL-----------RKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 272 -------g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~l~~~p~~ 325 (355)
+.++++++++++++..+|+|..+|+.+..++... +.++++++.+++++++.|++
T Consensus 200 ~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 200 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence 5578888888888888888888887665555544 35778888888888888876
No 89
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.76 E-value=1.8e-16 Score=127.93 Aligned_cols=175 Identities=13% Similarity=0.040 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC----CHHHHHHHHHH
Q 040440 133 EKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG----ESEAAIKGFEE 208 (355)
Q Consensus 133 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~ 208 (355)
+|++.|+++.+. .++.+++.+|.+|...+++++|+.+|+++++. .++.+++.+|.+|.. + ++++|+.+|++
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 467888888875 78999999999999999999999999999875 578899999999988 7 99999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHhc----cCchHHHHHHHHHHHHHHHHhh-ccCC--chHHHHHHHHHHHHH----ccCHHHH
Q 040440 209 ILRKDPLRVEAYHGLVMAYDG----SDKKLNEVEKRIEKAMERCKKE-KKKS--DLRDFKLLIAQIKVM----ESKHSEA 277 (355)
Q Consensus 209 ~~~~~p~~~~~~~~l~~~~~~----~~~~~~~a~~~~~~Al~~~~~~-~~~~--~~~~~~~~la~~~~~----~g~~~~A 277 (355)
+.+ +.++.+++.+|.+|.. .++ +++|++++++. ...+ .....+..+|.+|.. .+++++|
T Consensus 79 A~~--~g~~~a~~~Lg~~y~~g~g~~~d--------~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 79 AVE--AGSKSGEIVLARVLVNRQAGATD--------VAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp HHH--TTCHHHHHHHHHHHTCGGGSSCC--------HHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred HHH--CCCHHHHHHHHHHHHcCCCCccC--------HHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 965 5789999999999987 667 88888888883 3333 348899999999999 8899999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHhCC
Q 040440 278 LRVYEELVKEEPRDFRPYLCQGIIYTLL-R-----KKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~l~~~p 323 (355)
+.+|+++.+. +.+..+++.+|.+|... | ++++|+.+|+++.+...
T Consensus 149 ~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 149 SEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9999999998 66888999999999864 3 89999999999999854
No 90
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.76 E-value=3.7e-17 Score=144.10 Aligned_cols=173 Identities=12% Similarity=0.028 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCC------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------CH
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLIELEP------NEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPL-------RV 217 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-------~~ 217 (355)
.++.+|..+...|++++|+..|+++++... ....++..+|.+|...|++++|+.+++++++..+. ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 567789999999999999999999987632 23457899999999999999999999999987542 24
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCCh
Q 040440 218 EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVK-----EEPRDF 292 (355)
Q Consensus 218 ~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-----~~~~~~ 292 (355)
.++..+|.+|...|+ ++.|...+++|+++.++.........++..+|.+|...|++++|+.+|++++. .+|...
T Consensus 183 ~~~~~lg~~y~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 261 (378)
T 3q15_A 183 QSLFVIAGNYDDFKH-YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP 261 (378)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH
Confidence 567899999999998 88888888888888877655556677899999999999999999999999998 677778
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 293 RPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
.++..+|.++...|++++|..++++++++.+.
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999998654
No 91
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.75 E-value=2.3e-16 Score=133.14 Aligned_cols=225 Identities=9% Similarity=0.038 Sum_probs=180.8
Q ss_pred ccccccccccchhhhhhhhhhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH----HHc---cCHHHHHHHHHHHHH
Q 040440 105 PVAAAATVESTNESTKDTTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVR----IKS---QKLVEAVDVIDRLIE 177 (355)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~----~~~---g~~~~A~~~~~~~~~ 177 (355)
.+..+|....++.-...........+++++++.++.++..+|.+..+|+..+.++ ... +++++++.+++++++
T Consensus 59 ~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~ 138 (306)
T 3dra_A 59 GINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLS 138 (306)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHH
T ss_pred HHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH
Confidence 4566777777776555442222224899999999999999999999999999988 666 789999999999999
Q ss_pred cCCCchHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccC
Q 040440 178 LEPNEFEWQLLKAQVQSYAGESE--AAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKK 254 (355)
Q Consensus 178 ~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~ 254 (355)
.+|.+..+|...+.+....|+++ +++++++++++.+|.|..+|...+.+....+... ....++++++.+++ +..+
T Consensus 139 ~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~--~~~~~~eEl~~~~~aI~~~ 216 (306)
T 3dra_A 139 SDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLA--TDNTIDEELNYVKDKIVKC 216 (306)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGC--CHHHHHHHHHHHHHHHHHC
T ss_pred hCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc--hhhhHHHHHHHHHHHHHhC
Confidence 99999999999999999999988 9999999999999999999999998888776420 01125555555555 4558
Q ss_pred CchHHHHHHHHHHHHHccCHHH-HHHHHHHHHHhC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCChhHH
Q 040440 255 SDLRDFKLLIAQIKVMESKHSE-ALRVYEELVKEE---PRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRR-LVPRNHPYR 329 (355)
Q Consensus 255 ~~~~~~~~~la~~~~~~g~~~~-A~~~~~~~l~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~ 329 (355)
|.+..+|..++.++...|+... ...++++++..+ +.+..++..++.++.+.|+.++|+++|+.+.+ .+|....+.
T Consensus 217 p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW 296 (306)
T 3dra_A 217 PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFW 296 (306)
T ss_dssp SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHH
Confidence 9999999999999999888555 556777777665 77889999999999999999999999999987 788775554
Q ss_pred HH
Q 040440 330 EY 331 (355)
Q Consensus 330 ~~ 331 (355)
.+
T Consensus 297 ~~ 298 (306)
T 3dra_A 297 DY 298 (306)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 92
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.75 E-value=5e-17 Score=143.23 Aligned_cols=189 Identities=13% Similarity=0.057 Sum_probs=146.2
Q ss_pred hccCCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-------chHHHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANP------NDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPN-------EFEWQLLKAQV 192 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~~~~la~~ 192 (355)
+..+++++|+..++++++..+ ....++..+|.+|...|++++|+.+++++++..+. ...++..+|.+
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 345699999999999987532 24678999999999999999999999999987432 23468899999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCC---C---CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Q 040440 193 QSYAGESEAAIKGFEEILRKDP---L---RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQ 266 (355)
Q Consensus 193 ~~~~g~~~~A~~~~~~~~~~~p---~---~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~ 266 (355)
+...|++++|+++|+++++..+ + ...++..+|.+|...|+ ++.|...+++|+++++... .+....++..+|.
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~-~~~A~~~~~~al~~~~~~~-~~~~~~~~~~la~ 269 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD-DQMAVEHFQKAAKVSREKV-PDLLPKVLFGLSW 269 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhhC-ChhHHHHHHHHHH
Confidence 9999999999999999998742 1 23568899999999998 7788888888888776643 3445888999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHcCC---HHHHHHHHH
Q 040440 267 IKVMESKHSEALRVYEELVKEEPR-----DFRPYLCQGIIYTLLRK---KDEAEKQFE 316 (355)
Q Consensus 267 ~~~~~g~~~~A~~~~~~~l~~~~~-----~~~~~~~l~~~~~~~g~---~~~A~~~~~ 316 (355)
+|...|++++|+.+++++++..+. ....+..++.++...|+ +.+|+.+++
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~ 327 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE 327 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 999999999999999999987432 12233444444444454 444444444
No 93
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.75 E-value=2e-17 Score=125.51 Aligned_cols=121 Identities=17% Similarity=0.090 Sum_probs=85.8
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHH
Q 040440 170 DVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCK 249 (355)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~ 249 (355)
..|++++..+|++...++.+|.++...|++++|+..|++++..+|++..+|+.+|.
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~------------------------ 63 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGA------------------------ 63 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH------------------------
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHH------------------------
Confidence 34666666666666677777777777777777777777777766666655554444
Q ss_pred hhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 250 KEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 250 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++++.|+++.+.
T Consensus 64 -----------------~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 64 -----------------CRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp -----------------HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred -----------------HHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 445556777777777778888888888888888888888888888888888888877766554
Q ss_pred HH
Q 040440 330 EY 331 (355)
Q Consensus 330 ~~ 331 (355)
..
T Consensus 127 ~~ 128 (148)
T 2vgx_A 127 EL 128 (148)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 94
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.75 E-value=1.6e-16 Score=134.08 Aligned_cols=198 Identities=10% Similarity=-0.014 Sum_probs=173.4
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHcCCCchHHHHHHHHHH----HHc---CCHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQ--KLVEAVDVIDRLIELEPNEFEWQLLKAQVQ----SYA---GESE 200 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~la~~~----~~~---g~~~ 200 (355)
..++|+..++++|..+|++..+|+..+.++...| ++++++..+++++..+|++..+|...+.++ ... ++++
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 4478999999999999999999999999999999 999999999999999999999999999988 667 8999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHH--HHHHHHHh-hccCCchHHHHHHHHHHHHHccC----
Q 040440 201 AAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIE--KAMERCKK-EKKKSDLRDFKLLIAQIKVMESK---- 273 (355)
Q Consensus 201 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~--~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~---- 273 (355)
+++++++++++.+|.+..+|...+.+....+. ++ ++++.+++ +..++.+..+|...+.+....|.
T Consensus 128 ~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~--------~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 128 REFDILEAMLSSDPKNHHVWSYRKWLVDTFDL--------HNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------TTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc--------cChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchh
Confidence 99999999999999999999999999999887 55 66666666 56689999999999999998887
Q ss_pred --HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhC---CCChhHHHHHHHH
Q 040440 274 --HSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDE-AEKQFEKFRRLV---PRNHPYREYFVDN 335 (355)
Q Consensus 274 --~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~l~~~---p~~~~~~~~~~~~ 335 (355)
++++++++++++..+|.|..+|+.++.++...|+..+ ...++++++.++ |.+.....++..+
T Consensus 200 ~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~ 267 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKI 267 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999998655 556777777665 5554444444333
No 95
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.75 E-value=2.6e-19 Score=155.07 Aligned_cols=182 Identities=12% Similarity=0.088 Sum_probs=155.3
Q ss_pred CHHHHHHHHHH----HHHcCCCCHHHHHHHHHHHH------------HccCHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQ----HLAANPNDIEALQTLMEVRI------------KSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQ 193 (355)
Q Consensus 130 ~~~~A~~~~~~----~l~~~p~~~~~~~~la~~~~------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 193 (355)
.+++|+..++. ++...|+. ++...|.... ..+++++|+..++++++..|+....+..+|.++
T Consensus 80 ~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~ 157 (336)
T 1p5q_A 80 GLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVY 157 (336)
T ss_dssp HHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHH
Confidence 67778887777 77777776 4544554432 567788899999988888888889999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCch
Q 040440 194 SYAGESEAAIKGFEEILRKDPLR---------------VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDL 257 (355)
Q Consensus 194 ~~~g~~~~A~~~~~~~~~~~p~~---------------~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~ 257 (355)
...|++++|+..|++++++.|++ ..++..+|.++...|+ +++|+..+++ +...|.+
T Consensus 158 ~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~--------~~~A~~~~~~al~~~p~~ 229 (336)
T 1p5q_A 158 FKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA--------FSAAIESCNKALELDSNN 229 (336)
T ss_dssp HHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTC
T ss_pred HHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999988 6899999999999999 6666666666 4557889
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q 040440 258 RDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEA-EKQFEKFRRL 321 (355)
Q Consensus 258 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~l~~ 321 (355)
..+++.+|.+|...|++++|+..|+++++.+|++..++..++.++...|++++| ...|++++..
T Consensus 230 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 230 EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 5577776653
No 96
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.74 E-value=2.3e-16 Score=133.96 Aligned_cols=177 Identities=12% Similarity=0.114 Sum_probs=146.6
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--
Q 040440 145 NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF------EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLR-- 216 (355)
Q Consensus 145 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-- 216 (355)
+|.....+...+..+...|++++|++.++++++..+... .+++.+|.++...|++++|+..++++++..+..
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 344556677888999999999999999999999877544 246678888999999999999999999875433
Q ss_pred ----HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCc-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-
Q 040440 217 ----VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSD-LRDFKLLIAQIKVMESKHSEALRVYEELVKEEPR- 290 (355)
Q Consensus 217 ----~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~- 290 (355)
..++..+|.+|...|+ ++.|...+++|+++++.....+. ...++..+|.+|..+|++++|+.+++++++..+.
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~-~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~ 229 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGY-LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 5688999999999998 88888888888887776433322 2368999999999999999999999999986532
Q ss_pred -----ChHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhC
Q 040440 291 -----DFRPYLCQGIIYTLLRKKDEA-EKQFEKFRRLV 322 (355)
Q Consensus 291 -----~~~~~~~l~~~~~~~g~~~~A-~~~~~~~l~~~ 322 (355)
...+++.+|.+|..+|++++| ..++++++.+.
T Consensus 230 ~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 230 NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 167899999999999999999 88899998764
No 97
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=1.2e-16 Score=147.23 Aligned_cols=213 Identities=9% Similarity=0.020 Sum_probs=174.6
Q ss_pred cccccccccchhhhhhhhhhh-----ccCCHH-------HHHHHHHHHHH-cCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 040440 106 VAAAATVESTNESTKDTTSAR-----EDVSYE-------EKEKEIEQHLA-ANPNDIEALQTLMEVRIKSQKLVEAVDVI 172 (355)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-------~A~~~~~~~l~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 172 (355)
+...|.....+...+...... ..++++ +|+.+|+++++ ..|++..+|..++..+...|++++|..+|
T Consensus 265 l~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~ 344 (530)
T 2ooe_A 265 LLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIY 344 (530)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 334455555555555541110 135665 99999999997 79999999999999999999999999999
Q ss_pred HHHHHcCCCch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HhccCchHHHHHHHHHHHHHHHHh
Q 040440 173 DRLIELEPNEF-EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMA-YDGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 173 ~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
+++++..|.+. .+|..++.++.+.|++++|+..|+++++..|.....+...+.+ +...|+ .+.|...|++|++
T Consensus 345 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~-~~~A~~~~e~al~---- 419 (530)
T 2ooe_A 345 NRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD-KSVAFKIFELGLK---- 419 (530)
T ss_dssp HHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCC-HHHHHHHHHHHHH----
T ss_pred HHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCC-hhHHHHHHHHHHH----
Confidence 99999999885 5899999999999999999999999999988877777766655 335677 4444444444444
Q ss_pred hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 251 EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFR----PYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 251 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
..|++..++..++.++...|++++|..+|++++...|.++. +|...+......|+.+.+..+++++++..|++
T Consensus 420 --~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 420 --KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp --HHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred --HCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 45788999999999999999999999999999998776554 88888999999999999999999999999854
No 98
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.73 E-value=2.5e-17 Score=128.92 Aligned_cols=152 Identities=12% Similarity=0.082 Sum_probs=132.4
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHH-HcCCHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQS-YAGESEAAIK 204 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~ 204 (355)
...+++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++..+| ++..+..++.+.. ..++..+|+.
T Consensus 17 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~ 95 (176)
T 2r5s_A 17 LQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELK 95 (176)
T ss_dssp HHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHH
Confidence 4445999999999999999999999999999999999999999999999999999 7776666664433 3344456899
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCch--HHHHHHHHHHHHHccCHHHHHHHH
Q 040440 205 GFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDL--RDFKLLIAQIKVMESKHSEALRVY 281 (355)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~ 281 (355)
.++++++.+|++..+++.+|.++...|+ +++|+..+++ ....|.. ..++..++.++...|+.++|+..|
T Consensus 96 ~~~~al~~~P~~~~~~~~la~~~~~~g~--------~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 96 RLEQELAANPDNFELACELAVQYNQVGR--------DEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccc--------HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 9999999999999999999999999999 8888888887 4555543 668999999999999999999999
Q ss_pred HHHHH
Q 040440 282 EELVK 286 (355)
Q Consensus 282 ~~~l~ 286 (355)
++++.
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
No 99
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.72 E-value=1.2e-16 Score=120.31 Aligned_cols=122 Identities=19% Similarity=0.083 Sum_probs=79.2
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 040440 171 VIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
.|++++..+|++...++.+|.++...|++++|+..|++++..+|++..+|+.+|.
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~------------------------- 60 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGA------------------------- 60 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH-------------------------
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHH-------------------------
Confidence 4555555566666666666666666666666666666666666666555544443
Q ss_pred hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHH
Q 040440 251 EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYRE 330 (355)
Q Consensus 251 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 330 (355)
+|...|++++|+..|++++..+|+++.+++.+|.++..+|++++|+.+|+++++++|+++.+..
T Consensus 61 ----------------~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 61 ----------------CRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp ----------------HHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred ----------------HHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 3344566777777777777777777777777777777777777777777777777776655544
Q ss_pred HHH
Q 040440 331 YFV 333 (355)
Q Consensus 331 ~~~ 333 (355)
...
T Consensus 125 ~~~ 127 (142)
T 2xcb_A 125 LAA 127 (142)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 100
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.72 E-value=2.7e-17 Score=124.64 Aligned_cols=111 Identities=8% Similarity=-0.074 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040440 132 EEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILR 211 (355)
Q Consensus 132 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 211 (355)
-.+...++++++.+|++..+++.+|.++...|++++|+..|++++..+|++..+|..+|.++...|++++|+..|+++++
T Consensus 19 ~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~ 98 (151)
T 3gyz_A 19 INSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA 98 (151)
T ss_dssp HHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 33445566777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 040440 212 KDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 212 ~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
++|+++.+++.+|.+|...|+ +++|+..+++
T Consensus 99 l~P~~~~~~~~lg~~~~~lg~--------~~eA~~~~~~ 129 (151)
T 3gyz_A 99 LGKNDYTPVFHTGQCQLRLKA--------PLKAKECFEL 129 (151)
T ss_dssp HSSSCCHHHHHHHHHHHHTTC--------HHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHcCC--------HHHHHHHHHH
Confidence 999999999999999999999 5555554444
No 101
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=3.1e-17 Score=151.03 Aligned_cols=187 Identities=10% Similarity=0.027 Sum_probs=169.8
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC--
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQK----------LVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG-- 197 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g-- 197 (355)
..++|++.+++++..+|++..+|+..+.++...|+ ++++++.++++++.+|++..+|...+.++...|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 45788999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccC-chHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHc----
Q 040440 198 ESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSD-KKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVME---- 271 (355)
Q Consensus 198 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~---- 271 (355)
+++++++.++++++.+|.+..+|...+.+....| . ++++++.+++ ...++.+..+|..++.++...
T Consensus 124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~--------~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVA--------PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCC--------HHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCC--------hHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence 7799999999999999999999999999999988 6 7778888777 677899999999999998875
Q ss_pred ----------cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH------------HHHHHHHHHHhCCC
Q 040440 272 ----------SKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDE------------AEKQFEKFRRLVPR 324 (355)
Q Consensus 272 ----------g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~------------A~~~~~~~l~~~p~ 324 (355)
+.++++++++++++..+|++..+|+.++.++...|++++ |+..|.+++.++|.
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred cccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceecccc
Confidence 678999999999999999999999999999999988766 45556666666664
No 102
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.72 E-value=7.3e-16 Score=114.16 Aligned_cols=134 Identities=24% Similarity=0.312 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhc
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDG 229 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 229 (355)
.++..+|.++...|++++|+..++++++.+|.+...+..+|.++...|++++|+..+++++...|.+...+..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------- 74 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN------- 74 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH-------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHH-------
Confidence 4567777888888888888888888887777777777778888888888888888888877777666554444
Q ss_pred cCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Q 040440 230 SDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKD 309 (355)
Q Consensus 230 ~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~ 309 (355)
+|.++...|++++|+..+++++...|.+..++..+|.++...|+++
T Consensus 75 ----------------------------------l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 120 (136)
T 2fo7_A 75 ----------------------------------LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120 (136)
T ss_dssp ----------------------------------HHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred ----------------------------------HHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHH
Confidence 4555556677788888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhCCC
Q 040440 310 EAEKQFEKFRRLVPR 324 (355)
Q Consensus 310 ~A~~~~~~~l~~~p~ 324 (355)
+|..++++++..+|+
T Consensus 121 ~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 121 EAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCCC
Confidence 888888888888775
No 103
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.71 E-value=7.4e-16 Score=130.84 Aligned_cols=170 Identities=14% Similarity=0.111 Sum_probs=140.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCchH------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHH
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE------WQLLKAQVQSYAGESEAAIKGFEEILRKDPLR------VEA 219 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~ 219 (355)
+...+..+...|++++|+..++++++..+.... ++..+|.++...|++++|+.+|++++...+.. ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 344577888999999999999999987665544 34458888888899999999999999864332 346
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHHHhh-ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------h
Q 040440 220 YHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE-KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD------F 292 (355)
Q Consensus 220 ~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~------~ 292 (355)
+..+|.+|...|+ ++.|...+++|++.++.. ...+....++..+|.+|..+|++++|+.+++++++..+.. .
T Consensus 158 ~~~lg~~y~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 158 ENAIANIYAENGY-LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 8899999999998 888888888888888775 4445556689999999999999999999999999875432 6
Q ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC
Q 040440 293 RPYLCQGIIYTLLRK-KDEAEKQFEKFRRLV 322 (355)
Q Consensus 293 ~~~~~l~~~~~~~g~-~~~A~~~~~~~l~~~ 322 (355)
.+++.+|.+|..+|+ +++|+.+|++++.+.
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 789999999999995 699999999998764
No 104
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.71 E-value=1.1e-15 Score=113.16 Aligned_cols=106 Identities=24% Similarity=0.291 Sum_probs=96.9
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 040440 127 EDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGF 206 (355)
Q Consensus 127 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 206 (355)
..+++++|+..++++++.+|++..++..+|.++...|++++|+.++++++...|.+...+..+|.++...|++++|+..+
T Consensus 13 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 92 (136)
T 2fo7_A 13 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 92 (136)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence 34599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHhccCc
Q 040440 207 EEILRKDPLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 207 ~~~~~~~p~~~~~~~~l~~~~~~~~~ 232 (355)
++++...|.+...+..++.++...|+
T Consensus 93 ~~~~~~~~~~~~~~~~la~~~~~~~~ 118 (136)
T 2fo7_A 93 QKALELDPRSAEAWYNLGNAYYKQGD 118 (136)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHcc
Confidence 99999999887777766666655555
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.71 E-value=1.6e-16 Score=134.49 Aligned_cols=153 Identities=10% Similarity=0.066 Sum_probs=140.3
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
...+++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++..+|+........+..+...++.++|+..
T Consensus 128 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~ 207 (287)
T 3qou_A 128 MQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQ 207 (287)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHH
Confidence 44569999999999999999999999999999999999999999999999999997777777777888899999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCch--HHHHHHHHHHHHHccCHHHHHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDL--RDFKLLIAQIKVMESKHSEALRVYE 282 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~ 282 (355)
|+++++.+|++..+++.+|.++...|+ +++|+..+.+ ....|.. ..++..++.++...|+.++|...|+
T Consensus 208 l~~al~~~P~~~~~~~~la~~l~~~g~--------~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r 279 (287)
T 3qou_A 208 LQQQVAENPEDAALATQLALQLHQVGR--------NEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYR 279 (287)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHccc--------HHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHH
Confidence 999999999999999999999999999 7788877777 4556666 8899999999999999999999999
Q ss_pred HHHH
Q 040440 283 ELVK 286 (355)
Q Consensus 283 ~~l~ 286 (355)
+++.
T Consensus 280 ~al~ 283 (287)
T 3qou_A 280 RQLY 283 (287)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
No 106
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.71 E-value=1.5e-16 Score=120.56 Aligned_cols=97 Identities=14% Similarity=0.057 Sum_probs=88.8
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 040440 136 KEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPL 215 (355)
Q Consensus 136 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 215 (355)
..+++++..+|++..+++.+|.++...|++++|+..|++++..+|++..+|+.+|.++...|++++|+..|++++.++|+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCc
Q 040440 216 RVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 216 ~~~~~~~l~~~~~~~~~ 232 (355)
++.+++.+|.++...|+
T Consensus 88 ~~~~~~~lg~~~~~~g~ 104 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGE 104 (148)
T ss_dssp CTHHHHHHHHHHHHTTC
T ss_pred CchHHHHHHHHHHHcCC
Confidence 98887777766655444
No 107
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.70 E-value=2.4e-16 Score=132.87 Aligned_cols=183 Identities=11% Similarity=0.050 Sum_probs=138.4
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+..+++++|+..|+++++.+|++..++..+|.+|...|++++|+..++++++.+|++..+++.+|.++...|++++|+..
T Consensus 15 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 94 (281)
T 2c2l_A 15 FVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIAN 94 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEEL 284 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 284 (355)
|+++++++|++...+...+...... .++...... ....+.+..+...++.++ .|++++|++.++++
T Consensus 95 ~~~al~l~p~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~a 161 (281)
T 2c2l_A 95 LQRAYSLAKEQRLNFGDDIPSALRI-----------AKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQRN 161 (281)
T ss_dssp HHHHHHHHHHTTCCCCSHHHHHHHH-----------HHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGG
T ss_pred HHHHHHhCccchhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhh
Confidence 9999998876532211111111111 111111111 223455556666666654 68999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q 040440 285 VKEEPRDFRPYLCQGIIYTLL-RKKDEAEKQFEKFRRL 321 (355)
Q Consensus 285 l~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~l~~ 321 (355)
++.+|++......++.++... +.+++|...|.++.+.
T Consensus 162 l~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 162 HEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp GTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred hccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999998888888888777776 7788999999887653
No 108
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.70 E-value=1.6e-14 Score=122.54 Aligned_cols=221 Identities=11% Similarity=0.078 Sum_probs=175.8
Q ss_pred ccccccccccchhhhhhhhhhhccC--------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHH
Q 040440 105 PVAAAATVESTNESTKDTTSAREDV--------SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQ--KLVEAVDVIDR 174 (355)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~ 174 (355)
.+..+|....++.-........... .+++++..++.++..+|.+..+|...+.++...| ++++++.++++
T Consensus 56 ~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k 135 (331)
T 3dss_A 56 ILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCAR 135 (331)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHH
T ss_pred HHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHH
Confidence 4455666666665443332222111 2789999999999999999999999999999999 49999999999
Q ss_pred HHHcCCCchHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHH------HHHHHHHHHHHH
Q 040440 175 LIELEPNEFEWQLLKAQVQSYAGE-SEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLN------EVEKRIEKAMER 247 (355)
Q Consensus 175 ~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~------~a~~~~~~Al~~ 247 (355)
+++.+|.+..+|...+.+....|. +++++++++++++.+|.|..+|..++.++...+.... ...+.++++++.
T Consensus 136 ~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~ 215 (331)
T 3dss_A 136 FLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELEL 215 (331)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHH
Confidence 999999999999999999999999 6999999999999999999999999988876621000 001336667777
Q ss_pred HHh-hccCCchHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH---HcCCHHHHH
Q 040440 248 CKK-EKKKSDLRDFKLLIAQIKVME-----------SKHSEALRVYEELVKEEPRDFRPYLCQGIIYT---LLRKKDEAE 312 (355)
Q Consensus 248 ~~~-~~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~---~~g~~~~A~ 312 (355)
+.+ +...|.+..+|+.+..++... +.++++++.++++++..|++.+.+..++.+.. ..|..++..
T Consensus 216 ~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~ 295 (331)
T 3dss_A 216 VQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETL 295 (331)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHH
Confidence 666 566899999998776666655 56899999999999999998666555554433 357889999
Q ss_pred HHHHHHHHhCCCC
Q 040440 313 KQFEKFRRLVPRN 325 (355)
Q Consensus 313 ~~~~~~l~~~p~~ 325 (355)
.++.+++++||..
T Consensus 296 ~~l~~l~~~Dp~r 308 (331)
T 3dss_A 296 QYFSTLKAVDPMR 308 (331)
T ss_dssp HHHHHHHHHCGGG
T ss_pred HHHHHHHHhCcch
Confidence 9999999999976
No 109
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.70 E-value=2.4e-16 Score=132.39 Aligned_cols=162 Identities=17% Similarity=0.118 Sum_probs=140.8
Q ss_pred HHccCHHHHHHHHHHHHHc--------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHH
Q 040440 160 IKSQKLVEAVDVIDRLIEL--------EPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKD--------PLRVEAYHGL 223 (355)
Q Consensus 160 ~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~l 223 (355)
...|++++|+.+|+++++. .|....++..+|.++...|++++|+.+|+++++.. |....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4578888888888888874 24556789999999999999999999999999873 5566789999
Q ss_pred HHHHhccCchHHHHHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChH
Q 040440 224 VMAYDGSDKKLNEVEKRIEKAMERCKKE--KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKE--------EPRDFR 293 (355)
Q Consensus 224 ~~~~~~~~~~~~~a~~~~~~Al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~ 293 (355)
|.++...|+ +++|...++++++.+++. ...+....++..+|.+|...|++++|+.+|+++++. .|....
T Consensus 92 ~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 92 AVLYGKRGK-YKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHTTTC-HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhcc-HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 999999998 888888888888888773 334677888999999999999999999999999988 666678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 294 PYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 294 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
++..+|.++...|++++|+.++++++++.
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 199 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRA 199 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999873
No 110
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.70 E-value=1.5e-16 Score=119.76 Aligned_cols=97 Identities=12% Similarity=0.009 Sum_probs=85.7
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 040440 136 KEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPL 215 (355)
Q Consensus 136 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 215 (355)
..|++++..+|++...++.+|..+...|++++|+..|++++..+|++..+|+.+|.++...|++++|+..|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 46777888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCc
Q 040440 216 RVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 216 ~~~~~~~l~~~~~~~~~ 232 (355)
++.+++.+|.++...|+
T Consensus 85 ~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGD 101 (142)
T ss_dssp CTHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHcCC
Confidence 98888777766655544
No 111
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.69 E-value=9e-16 Score=120.04 Aligned_cols=87 Identities=16% Similarity=0.141 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHH-HHHcCCH--HHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQV-QSYAGES--EAAIKGF 206 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~--~~A~~~~ 206 (355)
++++|+..++++++.+|++..++..+|.+|...|++++|+.+|+++++.+|++..++..+|.+ +...|++ ++|+..|
T Consensus 25 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~ 104 (177)
T 2e2e_A 25 NPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMI 104 (177)
T ss_dssp --CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 455555555555555555555555555555555555555555555555545444444444444 4444444 4444444
Q ss_pred HHHHhhCCCC
Q 040440 207 EEILRKDPLR 216 (355)
Q Consensus 207 ~~~~~~~p~~ 216 (355)
+++++.+|++
T Consensus 105 ~~al~~~p~~ 114 (177)
T 2e2e_A 105 DKALALDSNE 114 (177)
T ss_dssp HHHHHHCTTC
T ss_pred HHHHHhCCCc
Confidence 4444444443
No 112
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.69 E-value=5.3e-17 Score=140.51 Aligned_cols=150 Identities=15% Similarity=0.083 Sum_probs=134.9
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---------------hHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE---------------FEWQLLKAQVQS 194 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~la~~~~ 194 (355)
++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++..|++ ..++.++|.++.
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 207 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 207 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888888888889999999999999999999999999999999999988 589999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccC
Q 040440 195 YAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESK 273 (355)
Q Consensus 195 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~ 273 (355)
..|++++|+..|+++++++|++..+++.+|.++...|+ +++|+..+++ +...|.+..++..++.++...|+
T Consensus 208 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--------~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 208 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND--------FELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR 279 (336)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 6666666665 45588899999999999999999
Q ss_pred HHHH-HHHHHHHHHh
Q 040440 274 HSEA-LRVYEELVKE 287 (355)
Q Consensus 274 ~~~A-~~~~~~~l~~ 287 (355)
+++| ...|++++..
T Consensus 280 ~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 280 QLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 9999 5577777643
No 113
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.67 E-value=5.1e-15 Score=123.75 Aligned_cols=187 Identities=13% Similarity=0.037 Sum_probs=151.0
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC--CchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040440 134 KEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEP--NEFEWQLLKAQVQSYAGESEAAIKGFEEILR 211 (355)
Q Consensus 134 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 211 (355)
|+..+++.++..+.+..++..+|.++...|++++|+.++.+.+..+| ++.+++..++.++...|+.+.|.+.++++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 78888888887666777788999999999999999999999998886 7888999999999999999999999999999
Q ss_pred hCCC----CHHHHHHH--HHHHhccC--chHHHHHHHHHHHHHHHHhh-ccCCchHHHHHHHHHHHHHccCHHHHHHHHH
Q 040440 212 KDPL----RVEAYHGL--VMAYDGSD--KKLNEVEKRIEKAMERCKKE-KKKSDLRDFKLLIAQIKVMESKHSEALRVYE 282 (355)
Q Consensus 212 ~~p~----~~~~~~~l--~~~~~~~~--~~~~~a~~~~~~Al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 282 (355)
.+|+ +......+ +.+....| + +++|+.+|++. ...++.......+. ++..+|++++|.+.++
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~--------~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKET--------ATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCST--------TTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHHH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCcc--------HHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHHH
Confidence 9883 22333333 43344444 6 78888888884 34444222222223 8999999999999999
Q ss_pred HHHHh----------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHH
Q 040440 283 ELVKE----------EPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREY 331 (355)
Q Consensus 283 ~~l~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 331 (355)
.+++. +|+++.++.+++.+...+|+ +|.++++++.+..|+++....+
T Consensus 236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 88776 48899999999999999997 8999999999999998665443
No 114
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.67 E-value=1.9e-14 Score=122.69 Aligned_cols=179 Identities=9% Similarity=0.040 Sum_probs=155.7
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHc-C-CHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQ-KLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYA-G-ESEAAIKGF 206 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~ 206 (355)
..++|++.+++++..+|++..+|+..+.++...| ++++++..+++++..+|++..+|..++.++... + +++++++++
T Consensus 69 ~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 4578999999999999999999999999999999 599999999999999999999999999999988 8 999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccC-------HHHHH
Q 040440 207 EEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESK-------HSEAL 278 (355)
Q Consensus 207 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~-------~~~A~ 278 (355)
+++++.+|.+..+|...+.+....+.........+.++++.+++ +..++.+..+|...+.++...++ +++++
T Consensus 149 ~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eEL 228 (349)
T 3q7a_A 149 HGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDEL 228 (349)
T ss_dssp HHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 99999999999999999988877766110011123367777666 56689999999999999998887 79999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Q 040440 279 RVYEELVKEEPRDFRPYLCQGIIYTLLRKK 308 (355)
Q Consensus 279 ~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~ 308 (355)
+++++++..+|+|..+|+.+..++...|+.
T Consensus 229 e~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 229 IYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999998888888776654
No 115
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.66 E-value=9.3e-15 Score=112.61 Aligned_cols=132 Identities=20% Similarity=0.141 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 040440 149 IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYD 228 (355)
Q Consensus 149 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 228 (355)
...+..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|++..+++.+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~----- 87 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRR----- 87 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-----
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH-----
Confidence 456778888888888888888888888888888888888888888888888888888888888887776655544
Q ss_pred ccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH--HHHHHHcC
Q 040440 229 GSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQ--GIIYTLLR 306 (355)
Q Consensus 229 ~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l--~~~~~~~g 306 (355)
|.++...|++++|+.+|+++++.+|.+..++..+ +..+...|
T Consensus 88 ------------------------------------a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~ 131 (166)
T 1a17_A 88 ------------------------------------AASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQK 131 (166)
T ss_dssp ------------------------------------HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 4455566777888888888888888877777444 44477778
Q ss_pred CHHHHHHHHHHHHHh
Q 040440 307 KKDEAEKQFEKFRRL 321 (355)
Q Consensus 307 ~~~~A~~~~~~~l~~ 321 (355)
++++|+..+++...+
T Consensus 132 ~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 132 AFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccchHHH
Confidence 888888888776554
No 116
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.66 E-value=1.8e-15 Score=111.49 Aligned_cols=113 Identities=16% Similarity=0.053 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 040440 149 IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYD 228 (355)
Q Consensus 149 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 228 (355)
..++..+|..++..|+|++|+.+|+++++++|++..++..+|.+|..+|++++|++.|+++++++|++...+..++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~--- 84 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK--- 84 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH---
Confidence 45678899999999999999999999999999999999999999999999999999999999887765544433333
Q ss_pred ccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHH
Q 040440 229 GSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYL 296 (355)
Q Consensus 229 ~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 296 (355)
++..+|.++...|++++|++.|++++...| ++....
T Consensus 85 -------------------------------~~~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~ 120 (127)
T 4gcn_A 85 -------------------------------AMSRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVK 120 (127)
T ss_dssp -------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHH
T ss_pred -------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHH
Confidence 334557777888888888888888888777 444433
No 117
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=7.9e-15 Score=107.78 Aligned_cols=121 Identities=16% Similarity=0.100 Sum_probs=85.6
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040440 147 NDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMA 226 (355)
Q Consensus 147 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 226 (355)
.....+..+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++++|++..+++.+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34566777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Q 040440 227 YDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIK 268 (355)
Q Consensus 227 ~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~ 268 (355)
+...|+ +++|...+++++++.......|.+..++..++.+.
T Consensus 82 ~~~~~~-~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 82 QIAVKE-YASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHTTC-HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHhC-HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 888777 44444445544444333333355555555555444
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.66 E-value=9.9e-15 Score=117.56 Aligned_cols=139 Identities=14% Similarity=0.063 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhc
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDG 229 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 229 (355)
..++.+|..+...|++++|+..|++++ ++ +..+++.+|.++...|++++|+..|+++++.+|++..+++.+|.++..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 346788888999999999999999885 33 667888999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHHHHHhhc----------cCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh
Q 040440 230 SDKKLNEVEKRIEKAMERCKKEK----------KKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDF 292 (355)
Q Consensus 230 ~~~~~~~a~~~~~~Al~~~~~~~----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 292 (355)
.|+ +++|...++++++...... ..+....++..+|.+|...|++++|+..|+++++.+|++.
T Consensus 84 ~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 84 TEK-YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp TTC-HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred ccc-HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 888 3444444444433322111 2334558899999999999999999999999999998763
No 119
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.65 E-value=5.5e-14 Score=128.12 Aligned_cols=181 Identities=15% Similarity=0.070 Sum_probs=118.3
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHc-----CCHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIK----SQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYA-----GESE 200 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~ 200 (355)
++++|+..|+++++. .+..++..+|.+|.. .+++++|+.+|+++.+. .+..+++.+|.+|... ++++
T Consensus 238 ~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~ 313 (490)
T 2xm6_A 238 DYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNRE 313 (490)
T ss_dssp CHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHH
T ss_pred CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHH
Confidence 455555555554442 334555555555555 55555555555555533 3444555555555554 5555
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHH----ccCHHH
Q 040440 201 AAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVM----ESKHSE 276 (355)
Q Consensus 201 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~ 276 (355)
+|+.+|+++.+. .+..+++.+|.+|...|. ...+++|++++++.... .+...++.+|.+|.. .+++++
T Consensus 314 ~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~-----~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~ 385 (490)
T 2xm6_A 314 QAISWYTKSAEQ--GDATAQANLGAIYFRLGS-----EEEHKKAVEWFRKAAAK-GEKAAQFNLGNALLQGKGVKKDEQQ 385 (490)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHSCC-----HHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHhc--CCHHHHHHHHHHHHhCCC-----cccHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 666665555553 344555556655554431 11356666666662222 567889999999998 899999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC
Q 040440 277 ALRVYEELVKEEPRDFRPYLCQGIIYTL----LRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 277 A~~~~~~~l~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~p~ 324 (355)
|+.+|+++.+. .++.+++.+|.+|.. .+++++|..+|+++++..|+
T Consensus 386 A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 386 AAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 99999999876 468899999999998 89999999999999999854
No 120
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.65 E-value=3.4e-15 Score=127.60 Aligned_cols=184 Identities=11% Similarity=0.003 Sum_probs=146.3
Q ss_pred hcc-CCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--c----hHHHHHHHHH
Q 040440 126 RED-VSYEEKEKEIEQHLAANPND------IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPN--E----FEWQLLKAQV 192 (355)
Q Consensus 126 ~~~-~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~----~~~~~~la~~ 192 (355)
|.. +++++|+..|+++++..+.. ..++..+|.+|...|++++|+.+|++++++.+. + ..++..+|.+
T Consensus 46 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 125 (307)
T 2ifu_A 46 FKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKL 125 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444 49999999999999865432 568899999999999999999999999987432 1 3478899999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Q 040440 193 QSYAGESEAAIKGFEEILRKDPLR------VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQ 266 (355)
Q Consensus 193 ~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~ 266 (355)
|.. |++++|+.+|++++++.+.. ..++..+|.++...|+ +++|+..+++++++.............+..+|.
T Consensus 126 ~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 126 MEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQK-FDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 998 99999999999999987643 4678899999999998 777777888888777664333334557888999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCChH-----HHHHHHHHHHHcCCHHHHHH
Q 040440 267 IKVMESKHSEALRVYEELVKEEPRDFR-----PYLCQGIIYTLLRKKDEAEK 313 (355)
Q Consensus 267 ~~~~~g~~~~A~~~~~~~l~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~ 313 (355)
++...|++++|+.+|++++ .+|.... ....++..+ ..|+.+++..
T Consensus 204 ~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999999999999999999 9886542 344455544 5677666555
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.65 E-value=4.3e-14 Score=119.89 Aligned_cols=161 Identities=11% Similarity=0.013 Sum_probs=136.1
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc------hHHHHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDI------EALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE------FEWQLLKAQVQ 193 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~ 193 (355)
+..+++++|++.++++++..+... ..++.+|.++...|++++|+..++++++..+.. ..++..+|.+|
T Consensus 86 ~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 165 (293)
T 2qfc_A 86 CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY 165 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 445699999999999999877654 346678889999999999999999999864433 45889999999
Q ss_pred HHcCCHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Q 040440 194 SYAGESEAAIKGFEEIL---RKDPLRV----EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQ 266 (355)
Q Consensus 194 ~~~g~~~~A~~~~~~~~---~~~p~~~----~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~ 266 (355)
...|++++|+.+|++++ +..+++. .+++++|.+|...|+ +++|...+++|+++............++..+|.
T Consensus 166 ~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~ 244 (293)
T 2qfc_A 166 AENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-YEESLYQVNKAIEISCRINSMALIGQLYYQRGE 244 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh-HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 99999999999999999 4455543 578999999999999 888888888888887665555566888999999
Q ss_pred HHHHccCHHHH-HHHHHHHHHh
Q 040440 267 IKVMESKHSEA-LRVYEELVKE 287 (355)
Q Consensus 267 ~~~~~g~~~~A-~~~~~~~l~~ 287 (355)
+|...|++++| ..+|++++..
T Consensus 245 ~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 245 CLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHHHHHHHH
Confidence 99999999999 8889998764
No 122
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.65 E-value=6.6e-15 Score=117.51 Aligned_cols=163 Identities=11% Similarity=0.090 Sum_probs=107.4
Q ss_pred HHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHhccCch
Q 040440 160 IKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRK------DPLRVEAYHGLVMAYDGSDKK 233 (355)
Q Consensus 160 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~~~ 233 (355)
+..|++++|.+.++......+....++..+|.++...|++++|+..+++++.. .+....++..+|.++...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN- 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC-
Confidence 34566666666443333322244455666666666666666666666666653 22234456666666666666
Q ss_pred HHHHHHHHHHHHHHHHhhccCC-chHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CC----hHHHHHHHHHHHHcC
Q 040440 234 LNEVEKRIEKAMERCKKEKKKS-DLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP--RD----FRPYLCQGIIYTLLR 306 (355)
Q Consensus 234 ~~~a~~~~~~Al~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~~----~~~~~~l~~~~~~~g 306 (355)
++++...+++++++++.....+ ....++..+|.++...|++++|+.++++++...+ .+ ..++..+|.++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 5566666666666655433222 4456688899999999999999999999997532 22 234689999999999
Q ss_pred CHHHHHHHHHHHHHhCC
Q 040440 307 KKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 307 ~~~~A~~~~~~~l~~~p 323 (355)
++++|..++++++++..
T Consensus 162 ~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIFA 178 (203)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999998753
No 123
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.65 E-value=1.7e-14 Score=122.89 Aligned_cols=172 Identities=10% Similarity=0.087 Sum_probs=153.6
Q ss_pred HHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhcc-C-chH
Q 040440 158 VRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG-ESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGS-D-KKL 234 (355)
Q Consensus 158 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-~-~~~ 234 (355)
+....+..++|++.+++++..+|++..+|...+.++...| +++++++.+++++..+|++..+|+..+.++... + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~-- 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQD-- 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSC--
T ss_pred HHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCC--
Confidence 3334455678999999999999999999999999999999 599999999999999999999999999998887 6 6
Q ss_pred HHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHH--------HHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 040440 235 NEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHS--------EALRVYEELVKEEPRDFRPYLCQGIIYTLL 305 (355)
Q Consensus 235 ~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 305 (355)
++++++++.+ +..++.+..+|...+.+....|.++ +++++++++++.+|.|..+|...+.++...
T Consensus 141 ------~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 141 ------PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp ------CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS
T ss_pred ------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 6788888877 6788999999999999999988888 999999999999999999999999999999
Q ss_pred CC-------HHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 040440 306 RK-------KDEAEKQFEKFRRLVPRNHPYREYFVDNMV 337 (355)
Q Consensus 306 g~-------~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 337 (355)
|+ ++++++++++++..+|+|.....++..++.
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~ 253 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLK 253 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 87 799999999999999999776656555543
No 124
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.64 E-value=1.3e-14 Score=123.08 Aligned_cols=161 Identities=13% Similarity=0.063 Sum_probs=136.2
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc------hHHHHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIE------ALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE------FEWQLLKAQVQ 193 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~ 193 (355)
+..+++++|+..++++++..+.+.. .+..+|.++...|++++|+.+|++++...+.. ..++..+|.+|
T Consensus 86 ~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 165 (293)
T 3u3w_A 86 CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY 165 (293)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 5556999999999999998776654 33458889999999999999999999864432 23689999999
Q ss_pred HHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Q 040440 194 SYAGESEAAIKGFEEILRKD-------PLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQ 266 (355)
Q Consensus 194 ~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~ 266 (355)
...|++++|+.+|+++++.. +....+++++|.+|...|+ +++|...+++|+++............++..+|.
T Consensus 166 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 244 (293)
T 3u3w_A 166 AENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-YEESLYQVNKAIEISCRINSMALIGQLYYQRGE 244 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 99999999999999999631 2234578999999999998 889999999999988887667777899999999
Q ss_pred HHHHcc-CHHHHHHHHHHHHHh
Q 040440 267 IKVMES-KHSEALRVYEELVKE 287 (355)
Q Consensus 267 ~~~~~g-~~~~A~~~~~~~l~~ 287 (355)
+|..+| ++++|+.+|++++..
T Consensus 245 ~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 245 CLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCcHHHHHHHHHHHHHH
Confidence 999999 579999999999865
No 125
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.64 E-value=7.7e-15 Score=117.12 Aligned_cols=163 Identities=16% Similarity=0.031 Sum_probs=132.1
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc------CCCchHHHHHHHHHHHHcCCH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL------EPNEFEWQLLKAQVQSYAGES 199 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~ 199 (355)
+..+++++|++.++......+....++..+|.++...|++++|+.++++++.. .+....++..+|.++...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34568999999666555433367889999999999999999999999999984 334456799999999999999
Q ss_pred HHHHHHHHHHHhh---CCCC----HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHcc
Q 040440 200 EAAIKGFEEILRK---DPLR----VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMES 272 (355)
Q Consensus 200 ~~A~~~~~~~~~~---~p~~----~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g 272 (355)
++|+.+++++++. .+++ ..++..+|.++...|+ ++++...+++++++.+..........++..+|.++...|
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD-LAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 9999999999998 4433 4568899999999998 888888888888887665444444566889999999999
Q ss_pred CHHHHHHHHHHHHHhCC
Q 040440 273 KHSEALRVYEELVKEEP 289 (355)
Q Consensus 273 ~~~~A~~~~~~~l~~~~ 289 (355)
++++|+.+++++++...
T Consensus 162 ~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIFA 178 (203)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999987643
No 126
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.64 E-value=1.8e-14 Score=126.57 Aligned_cols=193 Identities=11% Similarity=-0.004 Sum_probs=94.6
Q ss_pred CCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------CCchHHHHHHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAANPND------IEALQTLMEVRIKSQKLVEAVDVIDRLIELE--------PNEFEWQLLKAQVQS 194 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~ 194 (355)
+++++|+..+++++...+.. ..++..+|.++...|++++|+..++++++.. |.....+..+|.++.
T Consensus 67 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 146 (373)
T 1hz4_A 67 GELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW 146 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH
Confidence 36666666666665533321 1224455666666666666666666655542 112234455566666
Q ss_pred HcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHH--HHHHHH
Q 040440 195 YAGESEAAIKGFEEILRKDPL-----RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFK--LLIAQI 267 (355)
Q Consensus 195 ~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~--~~la~~ 267 (355)
..|++++|+.++++++...+. ....+..++.++...|+ ++++...+++++.+...... +...... ..++.+
T Consensus 147 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~ 224 (373)
T 1hz4_A 147 AWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD-LDNARSQLNRLENLLGNGKY-HSDWISNANKVRVIY 224 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHTTSCC-CHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhccCc-chhHHHHHHHHHHHH
Confidence 666666666666666655443 12345555566666655 33333333333333222100 0000011 123344
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040440 268 KVMESKHSEALRVYEELVKEEPRD----FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 268 ~~~~g~~~~A~~~~~~~l~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 323 (355)
+...|++++|...+++++...+.+ ...+..++.++...|++++|...+++++...+
T Consensus 225 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 284 (373)
T 1hz4_A 225 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR 284 (373)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 555666666666666655544322 12345556666666666666666666655543
No 127
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.64 E-value=3.2e-16 Score=125.02 Aligned_cols=152 Identities=14% Similarity=-0.020 Sum_probs=80.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccC
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSD 231 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 231 (355)
....+......|+++++.+.++......+.....+..+|..+...|++++|+..|+++++..|.++..... . ..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--~----~~ 80 (198)
T 2fbn_A 7 HHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ--I----LL 80 (198)
T ss_dssp ---------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH--H----HH
T ss_pred ccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh--h----HH
Confidence 34455566677888888888876666556667788899999999999999999999999988876511000 0 00
Q ss_pred chHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH
Q 040440 232 KKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEA 311 (355)
Q Consensus 232 ~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A 311 (355)
. ..+.+ ...++..+|.+|...|++++|+.+++++++.+|++..+++.+|.++..+|++++|
T Consensus 81 ~--------~~~~~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A 141 (198)
T 2fbn_A 81 D--------KKKNI-----------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEA 141 (198)
T ss_dssp H--------HHHHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred H--------HHHHH-----------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHH
Confidence 0 00000 1233444555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhCCCChhH
Q 040440 312 EKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 312 ~~~~~~~l~~~p~~~~~ 328 (355)
+.+|+++++++|++...
T Consensus 142 ~~~~~~al~~~p~~~~~ 158 (198)
T 2fbn_A 142 KENLYKAASLNPNNLDI 158 (198)
T ss_dssp HHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHCCCcHHH
Confidence 55555555555554433
No 128
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.63 E-value=9.1e-15 Score=112.81 Aligned_cols=116 Identities=17% Similarity=0.192 Sum_probs=84.8
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040440 146 PNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVM 225 (355)
Q Consensus 146 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 225 (355)
+.+...+..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|+++++++|++..+++.+|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34566777788888888888888888888888888887888888888888888888888888888877776666555444
Q ss_pred HHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 040440 226 AYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIY 302 (355)
Q Consensus 226 ~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~ 302 (355)
+ |...|++++|+.+|+++++++|++...|+..+...
T Consensus 88 ~-----------------------------------------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 88 A-----------------------------------------RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp H-----------------------------------------HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred H-----------------------------------------HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4 45556677777777777777777777665555443
No 129
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.63 E-value=1.1e-14 Score=117.38 Aligned_cols=132 Identities=10% Similarity=0.055 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHH
Q 040440 184 EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKL 262 (355)
Q Consensus 184 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~ 262 (355)
..++.+|.++...|++++|+..|++++ . .+..+++.+|.++...|+ +++|+..+++ ....+....++.
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~-~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~~~~~~~~~ 75 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--D-PHSRICFNIGCMYTILKN--------MTEAEKAFTRSINRDKHLAVAYF 75 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--S-CCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--C-CChHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCccchHHHH
Confidence 357789999999999999999999985 3 378899999999999999 6666666665 444688899999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCh----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040440 263 LIAQIKVMESKHSEALRVYEELVKEEPRDF----------------RPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNH 326 (355)
Q Consensus 263 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 326 (355)
.+|.+|...|++++|+..|+++++..|.+. .+++.+|.++...|++++|+.+|++++++.|++.
T Consensus 76 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 76 QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 999999999999999999999999888776 8999999999999999999999999999999763
No 130
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.62 E-value=4.3e-15 Score=116.14 Aligned_cols=108 Identities=16% Similarity=0.152 Sum_probs=70.5
Q ss_pred cccccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHccCH--HHHHHHHHHHHHcCCCch
Q 040440 108 AAATVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEV-RIKSQKL--VEAVDVIDRLIELEPNEF 183 (355)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~~~~g~~--~~A~~~~~~~~~~~~~~~ 183 (355)
..|.....+..++.. |... ++++|+..|+++++.+|++..++..+|.+ +...|++ ++|+..++++++.+|++.
T Consensus 39 ~~p~~~~~~~~lg~~---~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~ 115 (177)
T 2e2e_A 39 ANPQNSEQWALLGEY---YLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEI 115 (177)
T ss_dssp HCCSCHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCH
T ss_pred hCCCcHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcH
Confidence 334444444444443 3333 77777777777777777777777777776 6666776 777777777777777776
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 040440 184 EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVE 218 (355)
Q Consensus 184 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 218 (355)
.+++.+|.++...|++++|+..|+++++.+|++..
T Consensus 116 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 116 TALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 77777777777777777777777777777666543
No 131
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.62 E-value=2.6e-13 Score=123.64 Aligned_cols=175 Identities=11% Similarity=-0.001 Sum_probs=104.5
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH----cCCHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIK----SQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSY----AGESEA 201 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~ 201 (355)
++++|++.|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+. .+..+++.+|.+|.. .+++++
T Consensus 94 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~ 169 (490)
T 2xm6_A 94 DYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVM 169 (490)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 666666666666553 355666666666665 55666666666666543 345566666666655 556666
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhc----cCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHH----ccC
Q 040440 202 AIKGFEEILRKDPLRVEAYHGLVMAYDG----SDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVM----ESK 273 (355)
Q Consensus 202 A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~----~g~ 273 (355)
|+++|+++.+. ++..+++.+|.+|.. .++ +++|++.+++... ..+...+..+|.+|.. .++
T Consensus 170 A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~--------~~~A~~~~~~a~~-~~~~~a~~~lg~~y~~g~g~~~~ 238 (490)
T 2xm6_A 170 AREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERN--------DAISAQWYRKSAT-SGDELGQLHLADMYYFGIGVTQD 238 (490)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC--------HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCC
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcC--------HHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCCCCC
Confidence 66666666554 355666666666655 444 4444444444111 1244556666666665 566
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 040440 274 HSEALRVYEELVKEEPRDFRPYLCQGIIYTL----LRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 274 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~ 321 (355)
+++|+.+|+++++. .+..+++.+|.+|.. .+++++|+.+|+++.+.
T Consensus 239 ~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~ 288 (490)
T 2xm6_A 239 YTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ 288 (490)
T ss_dssp HHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc
Confidence 77777777766554 456666777777776 67777777777776654
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.61 E-value=2.3e-14 Score=105.98 Aligned_cols=122 Identities=14% Similarity=0.085 Sum_probs=87.2
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040440 145 NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLV 224 (355)
Q Consensus 145 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 224 (355)
.|.+..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+++++++.+|++..+++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l- 90 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK- 90 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH-
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH-
Confidence 4556677777777777777777777777777777777777777777777777777777777777777776665555444
Q ss_pred HHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 040440 225 MAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTL 304 (355)
Q Consensus 225 ~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~ 304 (355)
|.++...|++++|+.+|+++++.+|.+..++..++.++..
T Consensus 91 ----------------------------------------a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 91 ----------------------------------------AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp ----------------------------------------HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred ----------------------------------------HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 4445556677777777777777777777777777777776
Q ss_pred cCC
Q 040440 305 LRK 307 (355)
Q Consensus 305 ~g~ 307 (355)
.|+
T Consensus 131 ~~~ 133 (133)
T 2lni_A 131 QYN 133 (133)
T ss_dssp HTC
T ss_pred hcC
Confidence 653
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.61 E-value=1.9e-14 Score=106.45 Aligned_cols=120 Identities=16% Similarity=0.127 Sum_probs=106.6
Q ss_pred cccccchhhhhhhhhhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHH
Q 040440 110 ATVESTNESTKDTTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLK 189 (355)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 189 (355)
+....++..++.. .+..+++++|+..++++++.+|++..++..+|.++...|++++|+.+++++++.+|++..++..+
T Consensus 13 ~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNE--CFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHH--HHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 3344444444444 23445999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccC
Q 040440 190 AQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSD 231 (355)
Q Consensus 190 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 231 (355)
|.++...|++++|+..|+++++.+|.+..++..++.++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999987665
No 134
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.61 E-value=2e-14 Score=105.56 Aligned_cols=111 Identities=14% Similarity=0.202 Sum_probs=83.5
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHH
Q 040440 181 NEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDF 260 (355)
Q Consensus 181 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~ 260 (355)
.....+..+|..+...|++++|+..|+++++.+|++..++..+|.++
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~--------------------------------- 48 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAAL--------------------------------- 48 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH---------------------------------
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH---------------------------------
Confidence 34567888888888888999998888888888888776666555555
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCChhHHHHH
Q 040440 261 KLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV------PRNHPYREYF 332 (355)
Q Consensus 261 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~~ 332 (355)
...|++++|+..|+++++.+|++..+++.+|.++..+|++++|+..|+++++++ |++......+
T Consensus 49 --------~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l 118 (126)
T 3upv_A 49 --------AKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 118 (126)
T ss_dssp --------HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred --------HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHH
Confidence 555667777777777777777777788888888888888888888888888777 6655444433
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=6.6e-14 Score=128.90 Aligned_cols=168 Identities=10% Similarity=0.093 Sum_probs=148.6
Q ss_pred HccCH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhc
Q 040440 161 KSQKL-VEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGE----------SEAAIKGFEEILRKDPLRVEAYHGLVMAYDG 229 (355)
Q Consensus 161 ~~g~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 229 (355)
..|++ ++|++.+++++..+|++..+|...+.++...|+ ++++++.++++++.+|++..+|+..+.++..
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 44444 678999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred cC--chHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 040440 230 SD--KKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMES-KHSEALRVYEELVKEEPRDFRPYLCQGIIYTLL 305 (355)
Q Consensus 230 ~~--~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 305 (355)
.+ + ++++++.+++ ...++.+..+|...+.+....| .+++++++++++++.+|.+..+|..++.++..+
T Consensus 120 l~~~~--------~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 120 LPEPN--------WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp CSSCC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred ccccc--------HHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 98 5 4566666655 4558999999999999999999 999999999999999999999999999999885
Q ss_pred --------------CCHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 040440 306 --------------RKKDEAEKQFEKFRRLVPRNHPYREYFVDNM 336 (355)
Q Consensus 306 --------------g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 336 (355)
+.++++++++.+++.++|++.....+...++
T Consensus 192 ~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll 236 (567)
T 1dce_A 192 HPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL 236 (567)
T ss_dssp SCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence 5679999999999999999976655544443
No 136
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.60 E-value=4.9e-14 Score=108.67 Aligned_cols=107 Identities=14% Similarity=0.043 Sum_probs=91.6
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHH
Q 040440 180 PNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRD 259 (355)
Q Consensus 180 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~ 259 (355)
+.+...++.+|.++...|++++|+..|+++++.+|++..+++.+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------------------------------ 51 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNR------------------------------------ 51 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH------------------------------------
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHH------------------------------------
Confidence 34556788888888888888888888888888887776655544
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q 040440 260 FKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHP 327 (355)
Q Consensus 260 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 327 (355)
|.+|...|++++|+..|+++++.+|++..+|+.+|.++..+|++++|+.+|+++++++|++..
T Consensus 52 -----~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 52 -----AAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp -----HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred -----HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 555566788999999999999999999999999999999999999999999999999999866
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.60 E-value=2e-14 Score=105.74 Aligned_cols=123 Identities=23% Similarity=0.250 Sum_probs=91.8
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040440 145 NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLV 224 (355)
Q Consensus 145 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 224 (355)
+|.+...+..+|..+...|++++|+..+++++..+|++..++..+|.++...|++++|+..+++++..+|++..++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-- 85 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR-- 85 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH--
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH--
Confidence 445566777777777777777777777777777777777777777777777777777777777777776666554444
Q ss_pred HHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 040440 225 MAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTL 304 (355)
Q Consensus 225 ~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~ 304 (355)
+|.++...|++++|+.+|+++++.+|++..++..++.++..
T Consensus 86 ---------------------------------------~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 86 ---------------------------------------MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp ---------------------------------------HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred ---------------------------------------HHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 45555666778888888888888888888888888888888
Q ss_pred cCCH
Q 040440 305 LRKK 308 (355)
Q Consensus 305 ~g~~ 308 (355)
.|++
T Consensus 127 ~~~~ 130 (131)
T 2vyi_A 127 LREA 130 (131)
T ss_dssp HTTC
T ss_pred HhcC
Confidence 7765
No 138
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.60 E-value=2.4e-13 Score=119.25 Aligned_cols=174 Identities=13% Similarity=-0.024 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--H----
Q 040440 149 IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE-----WQLLKAQVQSYAGESEAAIKGFEEILRKDPLR--V---- 217 (355)
Q Consensus 149 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~---- 217 (355)
..++..+|.++...|++++|+..+++++...|.... ++..+|.++...|++++|+..+++++...+.. .
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 355678889999999999999999999998775432 57788999999999999999999999875432 2
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccC--CchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----
Q 040440 218 EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKK--SDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD---- 291 (355)
Q Consensus 218 ~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~---- 291 (355)
.++..++.++...|+ ++++...++++++........ +.....+..+|.++...|++++|+.++++++...+..
T Consensus 94 ~~~~~la~~~~~~G~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 94 WSLIQQSEILFAQGF-LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 336788999999998 888888888888887764333 5566778889999999999999999999999987642
Q ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040440 292 -FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 292 -~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 323 (355)
..++..+|.++...|++++|..++++++.+.+
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 205 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLG 205 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 35788999999999999999999999998743
No 139
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.59 E-value=1.6e-13 Score=99.94 Aligned_cols=121 Identities=21% Similarity=0.268 Sum_probs=85.1
Q ss_pred CCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 040440 145 NPND-IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGL 223 (355)
Q Consensus 145 ~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 223 (355)
+|.. ..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..++++++..|.+...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~- 82 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN- 82 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH-
Confidence 3443 56677777777777777777777777777777777777777777777777777777777777766665544443
Q ss_pred HHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 040440 224 VMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYT 303 (355)
Q Consensus 224 ~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~ 303 (355)
+|.++...|++++|+..++++++.+|.+..++..++.++.
T Consensus 83 ----------------------------------------la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 83 ----------------------------------------LGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp ----------------------------------------HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ----------------------------------------HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4555556677777777788888878877777777777776
Q ss_pred HcC
Q 040440 304 LLR 306 (355)
Q Consensus 304 ~~g 306 (355)
..|
T Consensus 123 ~~g 125 (125)
T 1na0_A 123 KQG 125 (125)
T ss_dssp HHC
T ss_pred hcc
Confidence 554
No 140
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.59 E-value=2e-14 Score=105.77 Aligned_cols=107 Identities=15% Similarity=0.045 Sum_probs=102.0
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+..+++++|+..+++++..+|++..++..+|.++...|++++|+.++++++..+|++..++..+|.++...|++++|+..
T Consensus 23 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 102 (131)
T 2vyi_A 23 MKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAY 102 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCc
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~ 232 (355)
|+++++.+|++..++..++.++...|+
T Consensus 103 ~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 103 YKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 999999999999999999999988775
No 141
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.58 E-value=1.7e-15 Score=136.63 Aligned_cols=150 Identities=14% Similarity=0.148 Sum_probs=120.3
Q ss_pred HccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHH
Q 040440 161 KSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLR---------------VEAYHGLVM 225 (355)
Q Consensus 161 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---------------~~~~~~l~~ 225 (355)
..+++++|+..|+++++..|+....+..+|..++..|+|++|+..|+++++++|.+ ..+++++|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777777788888888888888888888888888888877 688999999
Q ss_pred HHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 040440 226 AYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTL 304 (355)
Q Consensus 226 ~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~ 304 (355)
+|...|+ +++|+..+++ +...|.+..+++.+|.+|..+|++++|+..|+++++++|++..++..++.++..
T Consensus 326 ~~~~~g~--------~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 397 (457)
T 1kt0_A 326 CYLKLRE--------YTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKK 397 (457)
T ss_dssp HHHHTTC--------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHH
T ss_pred HHHHhcC--------HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999 6666666655 445788899999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHH-HHHHH
Q 040440 305 LRKKDEAEK-QFEKF 318 (355)
Q Consensus 305 ~g~~~~A~~-~~~~~ 318 (355)
.|++++|.. .++++
T Consensus 398 ~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 398 AKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988765 34433
No 142
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.58 E-value=1.5e-13 Score=105.74 Aligned_cols=124 Identities=15% Similarity=0.116 Sum_probs=106.9
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+..+++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++.+|.+..+++.+|.++...|++++|+..
T Consensus 24 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 103 (166)
T 1a17_A 24 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRD 103 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHH
Confidence 44569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHH--HhccCchHHHHHHHHHHHHHHHHh
Q 040440 206 FEEILRKDPLRVEAYHGLVMA--YDGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~--~~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
|+++++.+|++...+..++.+ +...|+ +++|...++++..++..
T Consensus 104 ~~~a~~~~p~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~ 149 (166)
T 1a17_A 104 YETVVKVKPHDKDAKMKYQECNKIVKQKA-FERAIAGDEHKRSVVDS 149 (166)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHHHcccchHHHhcc
Confidence 999999999999888555444 666666 45555555555444443
No 143
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.58 E-value=3.6e-15 Score=118.91 Aligned_cols=133 Identities=14% Similarity=0.051 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch----------------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040440 147 NDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF----------------EWQLLKAQVQSYAGESEAAIKGFEEIL 210 (355)
Q Consensus 147 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~~~ 210 (355)
.....+..+|..+...|++++|+..|+++++..|.+. .++..+|.++...|++++|+..+++++
T Consensus 36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3456788899999999999999999999999888776 678888888888888888888888888
Q ss_pred hhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 040440 211 RKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPR 290 (355)
Q Consensus 211 ~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 290 (355)
+.+|++..+++.+|.++ ...|++++|+..|+++++.+|+
T Consensus 116 ~~~p~~~~~~~~lg~~~-----------------------------------------~~~~~~~~A~~~~~~al~~~p~ 154 (198)
T 2fbn_A 116 KIDKNNVKALYKLGVAN-----------------------------------------MYFGFLEEAKENLYKAASLNPN 154 (198)
T ss_dssp HHSTTCHHHHHHHHHHH-----------------------------------------HHHTCHHHHHHHHHHHHHHSTT
T ss_pred HhCcccHHHHHHHHHHH-----------------------------------------HHcccHHHHHHHHHHHHHHCCC
Confidence 88777766655555444 4556677777777777777777
Q ss_pred ChHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Q 040440 291 DFRPYLCQGIIYTLLRKKDEAE-KQFEKFRR 320 (355)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~A~-~~~~~~l~ 320 (355)
+..++..++.++...|+.+++. ..|.+.+.
T Consensus 155 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 155 NLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-----------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777777777777776666 44444433
No 144
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.57 E-value=2.9e-15 Score=135.08 Aligned_cols=148 Identities=17% Similarity=0.114 Sum_probs=128.9
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---------------hHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE---------------FEWQLLKAQVQS 194 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~la~~~~ 194 (355)
++++|+..++..++..|+....+..+|..++..|+|++|+..|+++++.+|.+ ..++.++|.++.
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 328 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888888888888899999999999999999999999999999999988 589999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccC
Q 040440 195 YAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESK 273 (355)
Q Consensus 195 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~ 273 (355)
.+|++++|+..|+++++++|++..+++.+|.+|...|+ +++|+..+++ +...|.+..++..++.++...++
T Consensus 329 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~--------~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~ 400 (457)
T 1kt0_A 329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE--------FESAKGDFEKVLEVNPQNKAARLQISMCQKKAKE 400 (457)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHTTC----CHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 7777777777 56678888999999999999999
Q ss_pred HHHHHH-HHHHHH
Q 040440 274 HSEALR-VYEELV 285 (355)
Q Consensus 274 ~~~A~~-~~~~~l 285 (355)
+++|.. .|.+++
T Consensus 401 ~~~a~~~~~~~~f 413 (457)
T 1kt0_A 401 HNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHH
Confidence 988874 344443
No 145
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.57 E-value=3.6e-13 Score=121.30 Aligned_cols=176 Identities=12% Similarity=0.006 Sum_probs=155.2
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHcCCCchHHHHHHHHH-H--HHcCCHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKS----QKLVEAVDVIDRLIELEPNEFEWQLLKAQV-Q--SYAGESEAA 202 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~la~~-~--~~~g~~~~A 202 (355)
++++|+..|+++.+..+.+...++.+|.+|... +++++|+.+|+++. |.++.+++.+|.+ + ...+++++|
T Consensus 194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A 270 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQM 270 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHH
Confidence 899999999999999999999999999999765 79999999999988 8889999999998 4 568999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhccC-----chHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHH----ccC
Q 040440 203 IKGFEEILRKDPLRVEAYHGLVMAYDGSD-----KKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVM----ESK 273 (355)
Q Consensus 203 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-----~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~----~g~ 273 (355)
+.+|+++.+. +++.+++.+|.+|. .| + +++|+.++++.. +.+...++.+|.+|.. ..+
T Consensus 271 ~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d--------~~~A~~~~~~Aa--~g~~~A~~~Lg~~y~~G~g~~~d 337 (452)
T 3e4b_A 271 MKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPAD--------AKAAEAHFEKAV--GREVAADYYLGQIYRRGYLGKVY 337 (452)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCC--------HHHHHHHHHTTT--TTCHHHHHHHHHHHHTTTTSSCC
T ss_pred HHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCC--------HHHHHHHHHHHh--CCCHHHHHHHHHHHHCCCCCCcC
Confidence 9999999875 48999999999998 44 6 888888888855 7888999999999987 449
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Q 040440 274 HSEALRVYEELVKEEPRDFRPYLCQGIIYTL----LRKKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 274 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~p 323 (355)
+++|+.+|+++.+ ..+..+.+.+|.+|.. .++.++|..+|+++.+...
T Consensus 338 ~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 338 PQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9999999999976 4578899999999985 4689999999999988654
No 146
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.56 E-value=2.8e-13 Score=121.95 Aligned_cols=174 Identities=18% Similarity=0.146 Sum_probs=145.0
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHc----CCHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQ---KLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYA----GESEAA 202 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A 202 (355)
+.+++..+++.+...+|. +++.+|.+|...| ++++|+.+|+++.+.++.....++.+|.+|... +++++|
T Consensus 160 ~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred CHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 445555666666555554 9999999999999 999999999999999999988889999998765 799999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHH-H--hccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHcc-----CH
Q 040440 203 IKGFEEILRKDPLRVEAYHGLVMA-Y--DGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMES-----KH 274 (355)
Q Consensus 203 ~~~~~~~~~~~p~~~~~~~~l~~~-~--~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~ 274 (355)
+.+|+++. |+++.+++.+|.+ + ...++ +++|++++++... ..+...++.+|.+|. .| ++
T Consensus 237 ~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d--------~~~A~~~~~~Aa~-~g~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 237 QALLEKIA---PGYPASWVSLAQLLYDFPELGD--------VEQMMKYLDNGRA-ADQPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp HHHHHHHG---GGSTHHHHHHHHHHHHSGGGCC--------HHHHHHHHHHHHH-TTCHHHHHHHHHHHH-HCSSSCCCH
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHhCCCCCC--------HHHHHHHHHHHHH-CCCHHHHHHHHHHHH-cCCCCCCCH
Confidence 99999998 8999999999998 4 45556 5666666655221 247888999999998 56 99
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q 040440 275 SEALRVYEELVKEEPRDFRPYLCQGIIYTL----LRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 275 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~ 322 (355)
++|+.+|+++. +.++.+++++|.+|.. ..++++|..+|+++.+..
T Consensus 304 ~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 304 KAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp HHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 99999999998 8899999999999987 449999999999998754
No 147
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.55 E-value=1.4e-13 Score=102.49 Aligned_cols=103 Identities=17% Similarity=0.076 Sum_probs=82.4
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 040440 144 ANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGL 223 (355)
Q Consensus 144 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 223 (355)
.+|.++..+..+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|+++++.+|++..+++.+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 45678888999999999999999999999999999999999999999999999999999999999999998888888777
Q ss_pred HHHHhccCchHHHHHHHHHHHHHH
Q 040440 224 VMAYDGSDKKLNEVEKRIEKAMER 247 (355)
Q Consensus 224 ~~~~~~~~~~~~~a~~~~~~Al~~ 247 (355)
|.++...|+ ++.|...++++++.
T Consensus 84 ~~~~~~~~~-~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMES-YDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhh-HHHHHHHHHHHHHH
Confidence 777766666 33333333333333
No 148
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.55 E-value=5.1e-14 Score=118.61 Aligned_cols=164 Identities=11% Similarity=0.034 Sum_probs=78.6
Q ss_pred ccccccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHH
Q 040440 107 AAAATVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEW 185 (355)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 185 (355)
...|.....+..++.. |... ++++|+..++++++.+|++..+++.+|.+|...|++++|+..|+++++++|++...
T Consensus 32 ~~~p~~~~~~~~la~~---~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 108 (281)
T 2c2l_A 32 TRNPLVAVYYTNRALC---YLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 108 (281)
T ss_dssp HHCSCCHHHHHHHHHH---HHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HhCCccHHHHHHHHHH---HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhh
Confidence 3344444444444433 3333 66666666666666666666666666666666666666666666666665543211
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHH
Q 040440 186 QLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLI 264 (355)
Q Consensus 186 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~l 264 (355)
+........ +..++...........+.+......++.++ .|+ +++|++.+++ ....|.+......+
T Consensus 109 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~--------~~~A~~~~~~al~~~p~~~~~~~~l 175 (281)
T 2c2l_A 109 FGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAE--------RERELEECQRNHEGHEDDGHIRAQQ 175 (281)
T ss_dssp CCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHH--------HHHHHTTTSGGGTTTSCHHHHTHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHH--------HHHHHHHHHhhhccccchhhhhhHH
Confidence 111111111 111122222222233444444444444433 233 5555555544 34445555555555
Q ss_pred HHHHHHc-cCHHHHHHHHHHHHH
Q 040440 265 AQIKVME-SKHSEALRVYEELVK 286 (355)
Q Consensus 265 a~~~~~~-g~~~~A~~~~~~~l~ 286 (355)
+.++... +.+++|.+.|.++.+
T Consensus 176 ~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 176 ACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 5555444 455666666665543
No 149
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.55 E-value=8.9e-14 Score=102.28 Aligned_cols=101 Identities=14% Similarity=0.105 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHH
Q 040440 183 FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKL 262 (355)
Q Consensus 183 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~ 262 (355)
..++..+|..++..|+|++|+..|+++++++|++..++..+|.+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~----------------------------------- 52 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVY----------------------------------- 52 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHH-----------------------------------
Confidence 446778999999999999999999999999888877776666555
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 263 LIAQIKVMESKHSEALRVYEELVKEEPRD-------FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 263 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
..+|++++|+..|+++++++|++ ..++..+|.++..+|++++|+++|++++...|+
T Consensus 53 ------~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 53 ------FEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp ------HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred ------HHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 44566666666677777665543 247888999999999999999999999999885
No 150
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.55 E-value=2e-13 Score=122.24 Aligned_cols=195 Identities=13% Similarity=0.029 Sum_probs=160.6
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCH-----------------HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch-----
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDI-----------------EALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF----- 183 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----- 183 (355)
...++|++|++.|.++++..+... .++..+|.+|...|++++|++++.+++...+...
T Consensus 15 ~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 4b4t_Q 15 VNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTV 94 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHH
Confidence 555799999999999999887642 3688999999999999999999999987644332
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCc
Q 040440 184 -EWQLLKAQVQSYAGESEAAIKGFEEILRKD------PLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSD 256 (355)
Q Consensus 184 -~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~ 256 (355)
.+...++.++...|++++|+.++++++... +....++..+|.+|...|+ +++|...+++++..+......+.
T Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~l~~~~~~~~~~~~~~~ 173 (434)
T 4b4t_Q 95 KVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQ-YKDSLALINDLLREFKKLDDKPS 173 (434)
T ss_dssp HHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHTTSSCSTH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccC-hHHHHHHHHHHHHHHHhcccchh
Confidence 245667888888999999999999998763 2335678899999999999 66677777777666666666677
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 257 LRDFKLLIAQIKVMESKHSEALRVYEELVKEEP---RD----FRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 257 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~---~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
...++..++.+|...|++++|..++++++...+ .. ...+..+|.++...|++++|..+|.+++..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 174 LVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 788999999999999999999999999987532 22 356778899999999999999999999874
No 151
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.54 E-value=5.5e-14 Score=102.43 Aligned_cols=93 Identities=16% Similarity=0.145 Sum_probs=80.0
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
...+++++|+..++++++.+|++..+|+.+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|+..
T Consensus 28 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~ 107 (121)
T 1hxi_A 28 LKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALAS 107 (121)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHH
Q 040440 206 FEEILRKDPLRVE 218 (355)
Q Consensus 206 ~~~~~~~~p~~~~ 218 (355)
|+++++.+|++..
T Consensus 108 ~~~al~~~P~~~~ 120 (121)
T 1hxi_A 108 LRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHC-------
T ss_pred HHHHHHhCcCCCC
Confidence 9999998887643
No 152
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=4.4e-13 Score=100.96 Aligned_cols=80 Identities=14% Similarity=0.060 Sum_probs=49.3
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 040440 145 NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE---FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYH 221 (355)
Q Consensus 145 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 221 (355)
+|.+...+..+|..+...|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..++++++.+|++..+++
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 34556666666666666666666666666666666655 556666666666666666666666666666555544444
Q ss_pred HHH
Q 040440 222 GLV 224 (355)
Q Consensus 222 ~l~ 224 (355)
.+|
T Consensus 104 ~~a 106 (148)
T 2dba_A 104 RRS 106 (148)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 153
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.53 E-value=8.4e-14 Score=104.31 Aligned_cols=108 Identities=19% Similarity=0.217 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------CH-----HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhc
Q 040440 185 WQLLKAQVQSYAGESEAAIKGFEEILRKDPL-------RV-----EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEK 252 (355)
Q Consensus 185 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-------~~-----~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~ 252 (355)
.+..+|..+...|+|++|+..|+++++++|+ +. .+|.++|.++...|+ +++|+..+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr--------~~eAl~~~---- 80 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS--------FDEALHSA---- 80 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHH----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCC--------HHHHHHHH----
Confidence 3444555555555555555555555555554 32 377777777777777 44444432
Q ss_pred cCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040440 253 KKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPY----LCQGIIYTLLRKKDEAEKQFEKFRRLVPRNH 326 (355)
Q Consensus 253 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 326 (355)
++|+++|++.++++|++..+| +++|.++..+|++++|+..|+++++++|++.
T Consensus 81 ----------------------~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 81 ----------------------DKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp ----------------------HHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred ----------------------HHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 233333555556677777777 7777777777777777777777777776663
No 154
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.53 E-value=1.9e-13 Score=104.50 Aligned_cols=139 Identities=14% Similarity=0.029 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 040440 149 IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF------EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHG 222 (355)
Q Consensus 149 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 222 (355)
..++..+|.++...|++++|+.+++++++..+... .++..+|.++...|++++|+.+++++++..+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------ 82 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL------ 82 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------
Confidence 45677888888888888888888888887644222 367778888888888888888888877654321
Q ss_pred HHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------ChHHHH
Q 040440 223 LVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPR------DFRPYL 296 (355)
Q Consensus 223 l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~------~~~~~~ 296 (355)
........++..+|.++...|++++|+.+++++++..+. ...++.
T Consensus 83 -----------------------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 133 (164)
T 3ro3_A 83 -----------------------------KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACW 133 (164)
T ss_dssp -----------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------------------------CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHH
Confidence 111122334444555556666666666666665544211 134556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 297 CQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 297 ~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
.+|.++...|++++|..++++++++.
T Consensus 134 ~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 134 SLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 66666666666666666666666554
No 155
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.53 E-value=2e-13 Score=101.60 Aligned_cols=106 Identities=10% Similarity=0.075 Sum_probs=83.7
Q ss_pred cCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCch
Q 040440 178 LEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDL 257 (355)
Q Consensus 178 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~ 257 (355)
.++.+...++.+|.++...|++++|+..|++++..+|++..++..+|
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~--------------------------------- 50 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRA--------------------------------- 50 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH---------------------------------
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHH---------------------------------
Confidence 35667778888888888888888888888888888877766655554
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 258 RDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 258 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
.++...|++++|+..++++++.+|++..+++.+|.++...|++++|+..|+++++++|+
T Consensus 51 --------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 51 --------LCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp --------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 44455677788888888888888888888888888888888888888888888888776
No 156
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.53 E-value=4.2e-13 Score=108.07 Aligned_cols=142 Identities=13% Similarity=0.111 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccC----chHHHHHHHH
Q 040440 166 VEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSD----KKLNEVEKRI 241 (355)
Q Consensus 166 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~----~~~~~a~~~~ 241 (355)
.+|+.+|+++.+. .++.+++.+|.+|...+++++|+.+|+++.+. +++.+++.+|.+|.. + + +
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~--------~ 69 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQAD--------Y 69 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCC--------H
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCC--------H
Confidence 4578899999875 68899999999999999999999999999875 689999999999998 5 5 5
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHH----cCCHHHH
Q 040440 242 EKAMERCKKEKKKSDLRDFKLLIAQIKVM----ESKHSEALRVYEELVKEEP--RDFRPYLCQGIIYTL----LRKKDEA 311 (355)
Q Consensus 242 ~~Al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~--~~~~~~~~l~~~~~~----~g~~~~A 311 (355)
++|++++++.. ...+...++.+|.+|.. .+++++|+.+|+++.+..+ .++.+++.+|.+|.. .+++++|
T Consensus 70 ~~A~~~~~~A~-~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 70 PQARQLAEKAV-EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 55555555521 24578889999999987 8999999999999998877 348999999999999 8999999
Q ss_pred HHHHHHHHHh
Q 040440 312 EKQFEKFRRL 321 (355)
Q Consensus 312 ~~~~~~~l~~ 321 (355)
+.+|+++.++
T Consensus 149 ~~~~~~A~~~ 158 (212)
T 3rjv_A 149 SEYFKGSSSL 158 (212)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 9999999998
No 157
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.53 E-value=4.2e-13 Score=103.14 Aligned_cols=130 Identities=15% Similarity=0.038 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHH
Q 040440 183 FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKL 262 (355)
Q Consensus 183 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~ 262 (355)
...+..+|..++..|+|++|+..|++++...+..... ....+ -+ . ....+....++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~--------~~~~~--------~~-~------~~~~~~~~~~~~ 67 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILR--------EKPGE--------PE-W------VELDRKNIPLYA 67 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT--------SCTTS--------HH-H------HHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccc--------CCCCH--------HH-H------HHHHHHHHHHHH
Confidence 4567788888888888888888888888753211000 00000 00 0 001345677899
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-hHHHHHHHH
Q 040440 263 LIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNH-PYREYFVDN 335 (355)
Q Consensus 263 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~~~~~ 335 (355)
.+|.+|...|++++|+..+++++..+|++..+|+.+|.++..+|++++|+..|++++.++|++. .....+..+
T Consensus 68 nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 68 NMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999986 444333333
No 158
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.52 E-value=1.9e-13 Score=99.58 Aligned_cols=92 Identities=15% Similarity=0.077 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhcc
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGS 230 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 230 (355)
.++.+|..+...|++++|+..|+++++.+|++..+|+.+|.++...|++++|+..|+++++++|++..+++.+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHh
Q 040440 231 DKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 231 ~~~~~~a~~~~~~Al~~~~~ 250 (355)
|+ +++|+..+++
T Consensus 99 g~--------~~~A~~~~~~ 110 (121)
T 1hxi_A 99 HN--------ANAALASLRA 110 (121)
T ss_dssp HH--------HHHHHHHHHH
T ss_pred CC--------HHHHHHHHHH
Confidence 98 6666666555
No 159
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.52 E-value=9.9e-14 Score=103.70 Aligned_cols=92 Identities=15% Similarity=0.218 Sum_probs=85.8
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC--
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKL----------VEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG-- 197 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g-- 197 (355)
.|++|++.++++++.+|+++++|.++|.++...+++ ++|+..|+++++++|+...+|+.+|.+|..+|
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l 96 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL 96 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhccc
Confidence 789999999999999999999999999999999875 59999999999999999999999999999885
Q ss_pred ---------CHHHHHHHHHHHHhhCCCCHHHHH
Q 040440 198 ---------ESEAAIKGFEEILRKDPLRVEAYH 221 (355)
Q Consensus 198 ---------~~~~A~~~~~~~~~~~p~~~~~~~ 221 (355)
++++|+++|+++++++|++...+.
T Consensus 97 ~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~ 129 (158)
T 1zu2_A 97 TPDETEAKHNFDLATQFFQQAVDEQPDNTHYLK 129 (158)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcchhhhhccHHHHHHHHHHHHHhCCCCHHHHH
Confidence 899999999999999999865443
No 160
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.52 E-value=2.3e-12 Score=125.36 Aligned_cols=171 Identities=11% Similarity=-0.040 Sum_probs=131.2
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
++++|+++++++ +.+.+|..+|.++...|++++|++.|.++ ++...|..++.++.+.|++++|+++|..+
T Consensus 1091 nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mA 1160 (1630)
T 1xi4_A 1091 NLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMA 1160 (1630)
T ss_pred hHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444433 67899999999999999999999999885 78889999999999999999999999888
Q ss_pred HhhCCCC---------------------------HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHH
Q 040440 210 LRKDPLR---------------------------VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKL 262 (355)
Q Consensus 210 ~~~~p~~---------------------------~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~ 262 (355)
.+..++. ...+..+|..+...|+ |++|+.+|.. ...|.
T Consensus 1161 rk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~--------YeeA~~~Y~k-------A~ny~ 1225 (1630)
T 1xi4_A 1161 RKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKM--------YDAAKLLYNN-------VSNFG 1225 (1630)
T ss_pred HhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCC--------HHHHHHHHHh-------hhHHH
Confidence 7665331 1223445555555555 6777777665 34788
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCC-------------------------CChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 263 LIAQIKVMESKHSEALRVYEELVKEEP-------------------------RDFRPYLCQGIIYTLLRKKDEAEKQFEK 317 (355)
Q Consensus 263 ~la~~~~~~g~~~~A~~~~~~~l~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 317 (355)
.+|.+|.++|++++|++.++++..... .+++.+..++..|...|.+++|+.+++.
T Consensus 1226 rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1226 RLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred HHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 889999999999999999988743221 1333455677789999999999999999
Q ss_pred HHHhCCCC
Q 040440 318 FRRLVPRN 325 (355)
Q Consensus 318 ~l~~~p~~ 325 (355)
++.+++.+
T Consensus 1306 aL~LeraH 1313 (1630)
T 1xi4_A 1306 ALGLERAH 1313 (1630)
T ss_pred HhccChhH
Confidence 99998766
No 161
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.52 E-value=3.5e-15 Score=135.06 Aligned_cols=124 Identities=19% Similarity=0.139 Sum_probs=65.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccC
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSD 231 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 231 (355)
+..+|..+...|++++|++.|+++++.+|++..++..+|.++...|++++|++.|+++++++|++..+++.+|.+
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~----- 83 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS----- 83 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH-----
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-----
Confidence 344455555555556666666655555555555555555555555666666555555555555554444333333
Q ss_pred chHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHH--HHHcCCHH
Q 040440 232 KKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGII--YTLLRKKD 309 (355)
Q Consensus 232 ~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~--~~~~g~~~ 309 (355)
|..+|++++|++.|+++++.+|++..++..++.+ +...|+++
T Consensus 84 ------------------------------------~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~ 127 (477)
T 1wao_1 84 ------------------------------------NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFE 127 (477)
T ss_dssp ------------------------------------HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHC
T ss_pred ------------------------------------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555555555555555555555555555 55555555
Q ss_pred HHHHHHH
Q 040440 310 EAEKQFE 316 (355)
Q Consensus 310 ~A~~~~~ 316 (355)
+|++.++
T Consensus 128 ~A~~~~~ 134 (477)
T 1wao_1 128 RAIAGDE 134 (477)
T ss_dssp CC-----
T ss_pred HHhcccc
Confidence 5555555
No 162
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.52 E-value=6.6e-14 Score=104.64 Aligned_cols=111 Identities=17% Similarity=0.155 Sum_probs=93.0
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccC
Q 040440 194 SYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESK 273 (355)
Q Consensus 194 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 273 (355)
.+.+.|++|++.++++++++|++.++|..+|.++...++ ++.+.+.. +.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~--------~~~g~~al-----------------------~~ 61 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQ--------FHSISDAK-----------------------QM 61 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH--------HSCHHHHH-----------------------HH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcc--------cchhhhhH-----------------------hH
Confidence 356778999999999999999999999999999888776 44443321 34
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 040440 274 HSEALRVYEELVKEEPRDFRPYLCQGIIYTLLR-----------KKDEAEKQFEKFRRLVPRNHPYREYFVDN 335 (355)
Q Consensus 274 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 335 (355)
+++|+..|+++++++|++..+|+++|.+|..+| ++++|+.+|+++++++|++..++..+...
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 899999999999999999999999999999885 89999999999999999987766554433
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.51 E-value=8.3e-13 Score=95.09 Aligned_cols=112 Identities=16% Similarity=0.148 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 040440 149 IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYD 228 (355)
Q Consensus 149 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 228 (355)
+..+..+|..+...|++++|+..|++++..+|.+..++..+|.++...|++++|+..++++++.+|++..++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----- 78 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRK----- 78 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH-----
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHH-----
Confidence 445555666666666666666666666666666555666666666666666666666666665555544443333
Q ss_pred ccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 040440 229 GSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGII 301 (355)
Q Consensus 229 ~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 301 (355)
|.++...|++++|+..++++++.+|++..++..++.+
T Consensus 79 ------------------------------------a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 79 ------------------------------------AAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp ------------------------------------HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred ------------------------------------HHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 3334445555666666666666666665555555544
No 164
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.51 E-value=1.2e-12 Score=94.28 Aligned_cols=102 Identities=14% Similarity=0.081 Sum_probs=96.9
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+..+++++|+..+++++..+|++..++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..
T Consensus 15 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 94 (118)
T 1elw_A 15 LSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRT 94 (118)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGLVMAY 227 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~ 227 (355)
|+++++.+|++..++..++.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 95 YEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999998888765
No 165
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.50 E-value=2.9e-13 Score=104.06 Aligned_cols=82 Identities=16% Similarity=0.120 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHc------------------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040440 149 IEALQTLMEVRIKSQKLVEAVDVIDRLIEL------------------EPNEFEWQLLKAQVQSYAGESEAAIKGFEEIL 210 (355)
Q Consensus 149 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 210 (355)
+..+..+|..++..|+|++|+..|++++.. +|....++..+|.++...|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 455677777777777777777777777776 45555667777777777777777777777777
Q ss_pred hhCCCCHHHHHHHHHHHhcc
Q 040440 211 RKDPLRVEAYHGLVMAYDGS 230 (355)
Q Consensus 211 ~~~p~~~~~~~~l~~~~~~~ 230 (355)
+++|++..+++.+|.++...
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~ 110 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAA 110 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHT
T ss_pred hcCCcchHHHHHHHHHHHHH
Confidence 77776666655555554433
No 166
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.50 E-value=3.8e-13 Score=102.72 Aligned_cols=104 Identities=14% Similarity=0.028 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHH
Q 040440 184 EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLL 263 (355)
Q Consensus 184 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~ 263 (355)
.++..+|.++...|++++|+.+++++++..+. .........++..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-----------------------------------~~~~~~~~~~~~~ 54 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-----------------------------------FGDKAAERIAYSN 54 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------------------------HTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-----------------------------------hCCchHHHHHHHH
Confidence 35677777788888888888888777765332 1111222456677
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 264 IAQIKVMESKHSEALRVYEELVKEEPRD------FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 264 la~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++++.
T Consensus 55 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 119 (164)
T 3ro3_A 55 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 119 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 7888999999999999999998765432 5678999999999999999999999999874
No 167
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.49 E-value=1.2e-12 Score=95.14 Aligned_cols=105 Identities=25% Similarity=0.293 Sum_probs=99.1
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 040440 127 EDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGF 206 (355)
Q Consensus 127 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 206 (355)
..+++++|++.+++++..+|++..++..+|.++...|++++|+.+++++++..|.+...+..+|.++...|++++|+..|
T Consensus 21 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 100 (125)
T 1na0_A 21 KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 100 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 34599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHhccC
Q 040440 207 EEILRKDPLRVEAYHGLVMAYDGSD 231 (355)
Q Consensus 207 ~~~~~~~p~~~~~~~~l~~~~~~~~ 231 (355)
+++++.+|++..++..++.++...|
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 101 QKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999998876543
No 168
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.49 E-value=2.2e-12 Score=96.68 Aligned_cols=100 Identities=13% Similarity=0.092 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-------chH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhh-----
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRLIELEPN-------EFE-----WQLLKAQVQSYAGESEAAIKGFEEILRK----- 212 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~~~~~----- 212 (355)
..+..+|..+...|+|++|+..|+++++++|+ +.. +|.++|.++..+|+|++|+..|++++++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 44566666666667777777777777666666 322 6666666666777777777777777666
Q ss_pred --CCCCHHHH----HHHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 040440 213 --DPLRVEAY----HGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 213 --~p~~~~~~----~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
+|++..+| +++|.++...|+ +++|+..|++|+++-..
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr-~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGR-GAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCC-HHHHHHHHHHHHhcCCC
Confidence 66666666 666777666666 55555555555555433
No 169
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.48 E-value=5.2e-12 Score=118.02 Aligned_cols=187 Identities=12% Similarity=-0.055 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHH-HHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040440 132 EEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAV-DVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEIL 210 (355)
Q Consensus 132 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 210 (355)
+.....|++++...|.+.+.|...+..+...|+.++|+ .+|++++...|.+...|+.++......|++++|.++|++++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999997 99999999999999999999999999999999999999999
Q ss_pred hhC-----------CC-----------CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Q 040440 211 RKD-----------PL-----------RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIK 268 (355)
Q Consensus 211 ~~~-----------p~-----------~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~ 268 (355)
... |. ...+|..++.+..+.|+ .+.|...+++|++.. ......++...|.+.
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~-l~~AR~vf~~A~~~~-----~~~~~~lyi~~A~lE 479 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQG-LAASRKIFGKCRRLK-----KLVTPDIYLENAYIE 479 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHTG-----GGSCTHHHHHHHHHH
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhc-----CCCChHHHHHHHHHH
Confidence 752 43 23467777777777766 344444444443320 222355666677777
Q ss_pred HHcc-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 269 VMES-KHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 269 ~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
...+ +++.|..+|+.+++..|++...|...+......|+.+.|..+|++++...|+
T Consensus 480 ~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 480 YHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 6665 4899999999999999999999999999999999999999999999998874
No 170
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.48 E-value=1.3e-12 Score=95.98 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=38.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCch---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF---EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLR 216 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 216 (355)
++.+|.++...|++++|+..|+++++.+|++. .+++.+|.++...|++++|+..|+++++.+|++
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH 72 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence 44555566666666666666666666555555 455566666666666666666666666555554
No 171
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.48 E-value=1e-13 Score=100.45 Aligned_cols=93 Identities=14% Similarity=0.032 Sum_probs=86.1
Q ss_pred CCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAA---NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+++++|+..|+++++. +|++..++..+|.+|...|++++|+.+|+++++.+|++..+++.+|.++...|++++|+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4788999999999999 6889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHH
Q 040440 206 FEEILRKDPLRVEAYH 221 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~ 221 (355)
|+++++..|+++....
T Consensus 84 ~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 84 LLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHCCCHHHHH
T ss_pred HHHHHHhCCCcHHHHH
Confidence 9999999999987653
No 172
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.48 E-value=4.6e-13 Score=95.53 Aligned_cols=98 Identities=14% Similarity=0.142 Sum_probs=76.7
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHH
Q 040440 145 NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPL--RVEAYHG 222 (355)
Q Consensus 145 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~ 222 (355)
+|++..++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++..|+ +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 56677777778888888888888888888888888877777888888888888888888888888888887 7788888
Q ss_pred HHHHHhcc-CchHHHHHHHHHHHHHHHHh
Q 040440 223 LVMAYDGS-DKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 223 l~~~~~~~-~~~~~~a~~~~~~Al~~~~~ 250 (355)
++.++... |+ +++|++.+++
T Consensus 82 l~~~~~~~~~~--------~~~A~~~~~~ 102 (112)
T 2kck_A 82 KADALRYIEGK--------EVEAEIAEAR 102 (112)
T ss_dssp HHHHHTTCSSC--------SHHHHHHHHH
T ss_pred HHHHHHHHhCC--------HHHHHHHHHH
Confidence 88888887 77 6666666655
No 173
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.47 E-value=8e-13 Score=115.54 Aligned_cols=124 Identities=19% Similarity=0.124 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH----------------cCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 040440 149 IEALQTLMEVRIKSQKLVEAVDVIDRLIE----------------LEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRK 212 (355)
Q Consensus 149 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 212 (355)
...+..+|..+...|++++|+..|+++++ .+|....++.++|.++..+|++++|+.++++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45688999999999999999999999998 45555566777777777777777777777777776
Q ss_pred CCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh
Q 040440 213 DPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDF 292 (355)
Q Consensus 213 ~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 292 (355)
+|++..+++.+ |.+|...|++++|+..|+++++++|++.
T Consensus 303 ~p~~~~a~~~l-----------------------------------------g~~~~~~g~~~eA~~~l~~Al~l~P~~~ 341 (370)
T 1ihg_A 303 DPSNTKALYRR-----------------------------------------AQGWQGLKEYDQALADLKKAQEIAPEDK 341 (370)
T ss_dssp CTTCHHHHHHH-----------------------------------------HHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CchhHHHHHHH-----------------------------------------HHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 66665555444 4455556777788888888888888888
Q ss_pred HHHHHHHHHHHHcCCHHHHHH
Q 040440 293 RPYLCQGIIYTLLRKKDEAEK 313 (355)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~A~~ 313 (355)
.++..++.++...++++++..
T Consensus 342 ~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 342 AIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887777776654
No 174
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.47 E-value=6.8e-14 Score=121.04 Aligned_cols=156 Identities=10% Similarity=0.024 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040440 147 NDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMA 226 (355)
Q Consensus 147 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 226 (355)
.....+..+|..++..|++++|+..|++++...|++.. +...|+++++...+. ..+++++|.+
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~---------~~~~~nla~~ 239 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK---------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH---------THHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH---------HHHHHHHHHH
Confidence 34667889999999999999999999999999887652 112222222222211 1234444555
Q ss_pred HhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHH
Q 040440 227 YDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGII-YTL 304 (355)
Q Consensus 227 ~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~-~~~ 304 (355)
+...|+ +++|+..+++ +...+.+..+++.+|.+|..+|++++|+..|+++++++|++..++..++.+ ...
T Consensus 240 ~~~~g~--------~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~ 311 (338)
T 2if4_A 240 LIKLKR--------YDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQE 311 (338)
T ss_dssp HHTTTC--------CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------
T ss_pred HHHcCC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 544444 3333333322 222344455555556666667778888888888888888888888888877 445
Q ss_pred cCCHHHHHHHHHHHHHhCCCChh
Q 040440 305 LRKKDEAEKQFEKFRRLVPRNHP 327 (355)
Q Consensus 305 ~g~~~~A~~~~~~~l~~~p~~~~ 327 (355)
.++.+++...|++++...|++..
T Consensus 312 ~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 312 KALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHhhCCCCCCCC
Confidence 56677788888888888877643
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=4.1e-12 Score=95.55 Aligned_cols=112 Identities=12% Similarity=0.054 Sum_probs=100.4
Q ss_pred hCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCch---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 040440 212 KDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDL---RDFKLLIAQIKVMESKHSEALRVYEELVKE 287 (355)
Q Consensus 212 ~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 287 (355)
..+.+...++.+|..+...|+ +++|+..+++ ....+.. ..++..+|.+|...|++++|+..++++++.
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 94 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGD--------YGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK 94 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTC--------HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 356788999999999999999 8888888887 4556665 788999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHH
Q 040440 288 EPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREY 331 (355)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 331 (355)
+|++..+++.+|.++...|++++|+.+|+++++++|++......
T Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 138 (148)
T 2dba_A 95 DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEA 138 (148)
T ss_dssp TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 99999999999999999999999999999999999998655433
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.47 E-value=6.8e-13 Score=120.07 Aligned_cols=116 Identities=17% Similarity=0.160 Sum_probs=104.6
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+..+++++|++.|+++++.+|++..++..+|.+|...|++++|+..++++++.+|++..++..+|.+|..+|++++|++.
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~ 96 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRD 96 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHH--HhccCchHHHHHHHHHHHHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGLVMA--YDGSDKKLNEVEKRIEKAMERCK 249 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~--~~~~~~~~~~a~~~~~~Al~~~~ 249 (355)
|+++++.+|++..++..++.+ +...|+ +++|++.++
T Consensus 97 ~~~al~~~p~~~~~~~~l~~~~~~~~~g~--------~~~A~~~~~ 134 (477)
T 1wao_1 97 YETVVKVKPHDKDAKMKYQECNKIVKQKA--------FERAIAGDE 134 (477)
T ss_dssp HHHHHHHSTTCTTHHHHHHHHHHHHHHHH--------HCCC-----
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHH--------HHHHhcccc
Confidence 999999999999999988888 777777 888888877
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.46 E-value=3.7e-12 Score=93.59 Aligned_cols=106 Identities=16% Similarity=0.069 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHH
Q 040440 185 WQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLI 264 (355)
Q Consensus 185 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~l 264 (355)
.++.+|.++...|++++|+..|+++++.+|++.. ...+++.+
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~--------------------------------------~~~~~~~l 45 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVY--------------------------------------TPNALYWL 45 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT--------------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc--------------------------------------cHHHHHHH
Confidence 4567788888888888888888888888776541 11334455
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 265 AQIKVMESKHSEALRVYEELVKEEPRD---FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 265 a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
|.++...|++++|+..|++++..+|++ ..+++.+|.++...|++++|+..|+++++..|++...
T Consensus 46 g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 46 GESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 666667777888888888888888877 6778888888888888888888888888888876444
No 178
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.45 E-value=6.5e-13 Score=94.74 Aligned_cols=105 Identities=10% Similarity=0.037 Sum_probs=95.5
Q ss_pred CCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-
Q 040440 213 DPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPR- 290 (355)
Q Consensus 213 ~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~- 290 (355)
+|++...+..+|.++...|+ +++|+..+++ ....+....++..+|.++...|++++|+.+|+++++.+|.
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~ 73 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGN--------YTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE 73 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCC--------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCT
T ss_pred CCCcHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc
Confidence 57888889999999999999 6666666666 4456788899999999999999999999999999999999
Q ss_pred -ChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC
Q 040440 291 -DFRPYLCQGIIYTLL-RKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 291 -~~~~~~~l~~~~~~~-g~~~~A~~~~~~~l~~~p~~ 325 (355)
+..++..+|.++... |++++|++++++++...|.+
T Consensus 74 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 74 YNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp TCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 999999999999999 99999999999999999875
No 179
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.45 E-value=5e-12 Score=113.11 Aligned_cols=173 Identities=14% Similarity=0.087 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF-----------------EWQLLKAQVQSYAGESEAAIKGFEEILRK 212 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 212 (355)
.+....|..+...|+|++|++.|.++++..+... .++..+|.+|...|++++|++++++++..
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3455677888999999999999999999877543 25788999999999999999999999987
Q ss_pred CCCCH------HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 040440 213 DPLRV------EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVK 286 (355)
Q Consensus 213 ~p~~~------~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 286 (355)
.+... .+...++.++...|+ ++.+...+.+++..............++..+|.+|...|+|++|+.++++++.
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 85 MMQFAKSKTVKVLKTLIEKFEQVPDS-LDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHTSCHHHHHHHHHHHHHHHCSCCSC-HHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 54432 234556777767776 88888888888888888777777888999999999999999999999999986
Q ss_pred hC------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040440 287 EE------PRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 287 ~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 323 (355)
.. +....++..+|.+|...|++++|..++++++...+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 52 22357899999999999999999999999988643
No 180
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.44 E-value=6.1e-14 Score=121.33 Aligned_cols=130 Identities=15% Similarity=0.146 Sum_probs=98.4
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHH
Q 040440 182 EFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFK 261 (355)
Q Consensus 182 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~ 261 (355)
....+..+|..+...|++++|+..|++++...|++.. +...++ ++++...+. ..++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~--------~~~~~~~l~--------~~~~ 233 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGK--------YQDMALAVK--------NPCH 233 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHH--------HHHHHHHHH--------THHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhccc--------HHHHHHHHH--------HHHH
Confidence 3456889999999999999999999999999987542 233333 444443321 2478
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 040440 262 LLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDN 335 (355)
Q Consensus 262 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 335 (355)
.++|.+|..+|++++|+..|+++++.+|++..+|+++|.+|..+|++++|+.+|+++++++|++......+..+
T Consensus 234 ~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l 307 (338)
T 2if4_A 234 LNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRAL 307 (338)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999886665544433
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.44 E-value=1.5e-12 Score=95.61 Aligned_cols=124 Identities=16% Similarity=0.126 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAY 227 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 227 (355)
....+..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.++++++...|++...+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------- 75 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY------- 75 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH-------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhH-------
Confidence 3456677777777777777777777777777777777777777777777777777777777766544321110
Q ss_pred hccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 040440 228 DGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLR 306 (355)
Q Consensus 228 ~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g 306 (355)
.....++..+|.+|...|++++|+.+|+++++..| +...+..++.+....+
T Consensus 76 ---------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 76 ---------------------------RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 01144567788899999999999999999999888 6777878877766544
No 182
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.43 E-value=5.8e-13 Score=109.94 Aligned_cols=160 Identities=10% Similarity=0.010 Sum_probs=135.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHH-------HHHHHHcCCHHHHHHHHHHHHhhCCCC--------
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLK-------AQVQSYAGESEAAIKGFEEILRKDPLR-------- 216 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~~~~~~p~~-------- 216 (355)
++..|..+ ..++++.|.+.|.++++.+|+..++|..+ +.++...++..+++..+++.+.+.|..
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~ 88 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIG 88 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECC
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccC
Confidence 33444444 58999999999999999999999999999 899999999999999999999976643
Q ss_pred -------------HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHH
Q 040440 217 -------------VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYE 282 (355)
Q Consensus 217 -------------~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 282 (355)
.++...++.++...|+ |++|.+.+.. ....|.+. ..+.+|.++.+.|+|++|+..|+
T Consensus 89 g~y~~~~~~v~~r~dl~LayA~~L~~~g~--------y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~ 159 (282)
T 4f3v_A 89 GLYGDITYPVTSPLAITMGFAACEAAQGN--------YADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVK 159 (282)
T ss_dssp TTTCCCEEECSSHHHHHHHHHHHHHHHTC--------HHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CcccccccccCCHhHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445568889999999 9999999988 45567777 99999999999999999999999
Q ss_pred HHHHhCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 283 ELVKEEPRD--FRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 283 ~~l~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
++....+.. ..+++.+|.++..+|++++|+.+|++++..
T Consensus 160 ~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g 200 (282)
T 4f3v_A 160 SAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS 200 (282)
T ss_dssp TGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC
Confidence 876643211 358999999999999999999999999854
No 183
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.43 E-value=1.1e-12 Score=96.35 Aligned_cols=110 Identities=13% Similarity=0.132 Sum_probs=82.3
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+..+++++|+..++++++.+|.+..++..+|.++...|++++|+.++++++...|.+...+.
T Consensus 15 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------------ 76 (131)
T 1elr_A 15 YKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR------------------ 76 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH------------------
T ss_pred HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH------------------
Confidence 34459999999999999999999999999999999999999999999999987654321110
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHc
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVME 271 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~ 271 (355)
....+++.+|.++...|+ +++|++.+++ ....+ +......++.+....
T Consensus 77 ---------~~~~~~~~la~~~~~~~~--------~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 77 ---------QIAKAYARIGNSYFKEEK--------YKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp ---------HHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 113456788888988888 6666666655 22234 466666666665543
No 184
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.41 E-value=2e-11 Score=114.07 Aligned_cols=216 Identities=11% Similarity=-0.018 Sum_probs=172.9
Q ss_pred cccccccccchhhhhhhhhhhccCCHHHHH-HHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-----
Q 040440 106 VAAAATVESTNESTKDTTSAREDVSYEEKE-KEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELE----- 179 (355)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----- 179 (355)
+...|.....+...+.... ..++.++|. .+|++++...|.+...|...+......|++++|..+|++++...
T Consensus 336 L~~~p~~~~lW~~ya~~~~--~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~ 413 (679)
T 4e6h_A 336 AQHVCFAPEIWFNMANYQG--EKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLA 413 (679)
T ss_dssp HHHTTTCHHHHHHHHHHHH--HHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh
Confidence 3344555555555544311 123667886 99999999999999999999999999999999999999998752
Q ss_pred ------CC-----------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHhccCchHHHHHHHH
Q 040440 180 ------PN-----------EFEWQLLKAQVQSYAGESEAAIKGFEEILRK-DPLRVEAYHGLVMAYDGSDKKLNEVEKRI 241 (355)
Q Consensus 180 ------~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~~~~~a~~~~ 241 (355)
|. ...+|...+....+.|+.+.|+.+|.++++. .+.....|...+.+....+++.+.|...|
T Consensus 414 ~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~if 493 (679)
T 4e6h_A 414 ALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVL 493 (679)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred hhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 42 3347888888888999999999999999987 44456677777777666655466666667
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 242 EKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPR---DFRPYLCQGIIYTLLRKKDEAEKQFEKF 318 (355)
Q Consensus 242 ~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 318 (355)
+.+++. .+.+..++...+.+....|+.+.|..+|++++...|+ ...+|..........|+.+.+..+.+++
T Consensus 494 e~~Lk~------~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~ 567 (679)
T 4e6h_A 494 ELGLKY------FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRF 567 (679)
T ss_dssp HHHHHH------HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHH------CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 776665 4667888888999999999999999999999998873 5678888999999999999999999999
Q ss_pred HHhCCCChhHH
Q 040440 319 RRLVPRNHPYR 329 (355)
Q Consensus 319 l~~~p~~~~~~ 329 (355)
.+..|++....
T Consensus 568 ~~~~P~~~~~~ 578 (679)
T 4e6h_A 568 FEKFPEVNKLE 578 (679)
T ss_dssp HHHSTTCCHHH
T ss_pred HHhCCCCcHHH
Confidence 99999886553
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.39 E-value=3.3e-12 Score=111.66 Aligned_cols=107 Identities=15% Similarity=0.129 Sum_probs=101.1
Q ss_pred hccCCHHHHHHHHHHHHH----------------cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLA----------------ANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLK 189 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 189 (355)
+..+++++|+..|+++++ .+|.+..++.++|.+|...|++++|+.+++++++.+|++..+++.+
T Consensus 234 ~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 313 (370)
T 1ihg_A 234 FKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRR 313 (370)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 445599999999999998 7788899999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCc
Q 040440 190 AQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 190 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 232 (355)
|.+|...|++++|+..|+++++++|++..++..++.++...++
T Consensus 314 g~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 314 AQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 356 (370)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887776
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.36 E-value=2.3e-12 Score=93.16 Aligned_cols=93 Identities=14% Similarity=0.066 Sum_probs=82.1
Q ss_pred HHHHHHHHHh-hcc---CCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 040440 241 IEKAMERCKK-EKK---KSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFE 316 (355)
Q Consensus 241 ~~~Al~~~~~-~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 316 (355)
+++|+..+++ +.. .|....++..+|.+|...|++++|+.+|+++++.+|++..+++.+|.++...|++++|+..|+
T Consensus 6 ~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 85 (117)
T 3k9i_A 6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLL 85 (117)
T ss_dssp -CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777777 333 478889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCChhHHHHHH
Q 040440 317 KFRRLVPRNHPYREYFV 333 (355)
Q Consensus 317 ~~l~~~p~~~~~~~~~~ 333 (355)
+++...|+++....+..
T Consensus 86 ~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 86 KIIAETSDDETIQSYKQ 102 (117)
T ss_dssp HHHHHHCCCHHHHHTHH
T ss_pred HHHHhCCCcHHHHHHHH
Confidence 99999999876654433
No 187
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.36 E-value=1.1e-11 Score=89.24 Aligned_cols=83 Identities=13% Similarity=0.111 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 040440 133 EKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRK 212 (355)
Q Consensus 133 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 212 (355)
+|+..|+++++.+|++..++..+|.+|...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 040440 213 DPL 215 (355)
Q Consensus 213 ~p~ 215 (355)
.|.
T Consensus 83 ~~~ 85 (115)
T 2kat_A 83 AQS 85 (115)
T ss_dssp HHH
T ss_pred ccc
Confidence 764
No 188
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.35 E-value=1.5e-13 Score=120.02 Aligned_cols=158 Identities=11% Similarity=-0.034 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
++++|.+.+++. +++.+|..+|.++.+.|++++|++.|.++ .+...+..++..+...|++++|+.+++.+
T Consensus 18 ~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 18 NLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 344455555444 22235555555555555555555555432 23334444444455555555555544444
Q ss_pred HhhCCC---------------------------CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHH
Q 040440 210 LRKDPL---------------------------RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKL 262 (355)
Q Consensus 210 ~~~~p~---------------------------~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~ 262 (355)
.+..++ +...|..+|..+...|. |++|+.++... ..+.
T Consensus 88 rk~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~--------yeeA~~~Y~~a-------~n~~ 152 (449)
T 1b89_A 88 RKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKM--------YDAAKLLYNNV-------SNFG 152 (449)
T ss_dssp ---------------------CHHHHTTTTTCC----------------C--------TTTHHHHHHHT-------TCHH
T ss_pred HHhCccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCC--------HHHHHHHHHHh-------hhHH
Confidence 442111 22355555555555555 55555555543 2455
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 263 LIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEK 317 (355)
Q Consensus 263 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 317 (355)
.+|.++.++|++++|++.++++ .++.+|...+.++...|+++.|..+...
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~ 202 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH 202 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT
T ss_pred HHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH
Confidence 6677777777777777777766 3566677777777777777777555543
No 189
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.33 E-value=2.6e-10 Score=111.32 Aligned_cols=189 Identities=10% Similarity=0.011 Sum_probs=145.2
Q ss_pred ccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--------
Q 040440 111 TVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPN-------- 181 (355)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-------- 181 (355)
....++..++.. +... ++++|+..|.++ ++...|..+|.++.+.|+|++|+++|..+.+..++
T Consensus 1103 n~p~vWsqLAKA---ql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~La 1174 (1630)
T 1xi4_A 1103 NEPAVWSQLAKA---QLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELI 1174 (1630)
T ss_pred CCHHHHHHHHHH---HHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHH
Confidence 334445555554 6666 999999999876 88999999999999999999999999887655422
Q ss_pred -------------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHH
Q 040440 182 -------------------EFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIE 242 (355)
Q Consensus 182 -------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 242 (355)
+...+..+|..+...|+|++|+.+|.++ ..|..++.++.+.|+ ++
T Consensus 1175 faYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge--------~q 1238 (1630)
T 1xi4_A 1175 FALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGE--------YQ 1238 (1630)
T ss_pred HHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCC--------HH
Confidence 1223667899999999999999999986 478889999999998 55
Q ss_pred HHHHHHHhhccC--------------------------CchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHH
Q 040440 243 KAMERCKKEKKK--------------------------SDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYL 296 (355)
Q Consensus 243 ~Al~~~~~~~~~--------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 296 (355)
+|++.+++.... ..+++.+..++..|...|.+++|+.++++++.+++.+...+.
T Consensus 1239 ~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmft 1318 (1630)
T 1xi4_A 1239 AAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFT 1318 (1630)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHH
Confidence 555544442111 123445567788999999999999999999999998989998
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHHHhCC
Q 040440 297 CQGIIYTLL--RKKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 297 ~l~~~~~~~--g~~~~A~~~~~~~l~~~p 323 (355)
.+|.+|.+- ++..++.++|...+.+.+
T Consensus 1319 ELaiLyaKy~peklmEhlk~f~~rini~k 1347 (1630)
T 1xi4_A 1319 ELAILYSKFKPQKMREHLELFWSRVNIPK 1347 (1630)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhcccch
Confidence 888888754 566777777777666544
No 190
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.32 E-value=2.1e-11 Score=83.42 Aligned_cols=85 Identities=26% Similarity=0.264 Sum_probs=79.8
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040440 147 NDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMA 226 (355)
Q Consensus 147 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 226 (355)
.+..++..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..++.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhccC
Q 040440 227 YDGSD 231 (355)
Q Consensus 227 ~~~~~ 231 (355)
+...|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 86543
No 191
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.31 E-value=1.1e-11 Score=108.27 Aligned_cols=165 Identities=13% Similarity=-0.014 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
++++|+.+++.+++..+ ++.+...++.+|.+.|+++++.++++. | +..+|..+|..+...|+|++|+.+|.++
T Consensus 76 ~~EeAi~yl~~ark~~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 76 NWEELVKYLQMARKKAR-ESYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp ----------------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 77788887777776433 356667777777788888777776642 3 3347788888888888888888888866
Q ss_pred HhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 040440 210 LRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP 289 (355)
Q Consensus 210 ~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 289 (355)
..|..++.++.+.|+ |++|++.+++. .+...|..++.++...|+++.|..+...++ .
T Consensus 149 --------~n~~~LA~~L~~Lg~--------yq~AVea~~KA----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~-- 205 (449)
T 1b89_A 149 --------SNFGRLASTLVHLGE--------YQAAVDGARKA----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-V-- 205 (449)
T ss_dssp --------TCHHHHHHHHHTTTC--------HHHHHHHHHHH----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-T--
T ss_pred --------hhHHHHHHHHHHhcc--------HHHHHHHHHHc----CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-h--
Confidence 357777888888888 77777777665 246777777788888888888876666522 3
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 290 RDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 290 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
+++-...++..|.+.|++++|+.++++++.+++..
T Consensus 206 -~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah 240 (449)
T 1b89_A 206 -HADELEELINYYQDRGYFEELITMLEAALGLERAH 240 (449)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC
T ss_pred -CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH
Confidence 33334467777888888888888888888877655
No 192
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.31 E-value=9.4e-11 Score=98.05 Aligned_cols=155 Identities=12% Similarity=0.038 Sum_probs=125.3
Q ss_pred cCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC----chHHHHHH--HHHHHHcC--
Q 040440 128 DVSYEEKEKEIEQHLAANP--NDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPN----EFEWQLLK--AQVQSYAG-- 197 (355)
Q Consensus 128 ~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~l--a~~~~~~g-- 197 (355)
.+++++|++.+.+.+..+| ++.+++..++.++..+|+.+.|.+.++++.+.+|+ +......+ +++....|
T Consensus 113 ~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~ 192 (310)
T 3mv2_B 113 LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKE 192 (310)
T ss_dssp HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCc
Confidence 3599999999999999887 88999999999999999999999999999998883 23333444 44566666
Q ss_pred CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhcc-----------CCchHHHHHHH
Q 040440 198 ESEAAIKGFEEILRKDPL--RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKK-----------KSDLRDFKLLI 264 (355)
Q Consensus 198 ~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~-----------~~~~~~~~~~l 264 (355)
++.+|..+|+++.+..|+ ....+++ ++..+|+ +++|.+.++.... .+.++.++.++
T Consensus 193 ~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~--------~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~ 261 (310)
T 3mv2_B 193 TATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRN--------IAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQ 261 (310)
T ss_dssp TTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTC--------HHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCC--------HHHHHHHHHHHHHhcccccccccCCCCCHHHHHHH
Confidence 999999999999988886 2333333 8889999 6666666654211 48899999899
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCChHHH
Q 040440 265 AQIKVMESKHSEALRVYEELVKEEPRDFRPY 295 (355)
Q Consensus 265 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 295 (355)
+.+....|+ +|.++++++.+.+|+++.+.
T Consensus 262 i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 262 ITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 888888998 99999999999999988654
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.25 E-value=5.3e-11 Score=84.72 Aligned_cols=85 Identities=22% Similarity=0.105 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHH
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLR------VEAYH 221 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 221 (355)
+..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999999999999998 78888
Q ss_pred HHHHHHhccCc
Q 040440 222 GLVMAYDGSDK 232 (355)
Q Consensus 222 ~l~~~~~~~~~ 232 (355)
.++.++...|+
T Consensus 83 ~~~~~~~~~~~ 93 (111)
T 2l6j_A 83 RLELAQGAVGS 93 (111)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 88888877766
No 194
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.24 E-value=6.8e-11 Score=82.69 Aligned_cols=72 Identities=14% Similarity=0.206 Sum_probs=66.6
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 040440 144 ANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPL 215 (355)
Q Consensus 144 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 215 (355)
.+|+++.+++.+|.+|...|++++|+..|+++++.+|++..+|+.+|.+|...|++++|+..|++++++.|.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 479999999999999999999999999999999999999999999999999999999999999999998653
No 195
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.23 E-value=1.3e-10 Score=104.64 Aligned_cols=132 Identities=11% Similarity=0.028 Sum_probs=112.3
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHc-----CCCch---HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH---H
Q 040440 155 LMEVRIKSQKLVEAVDVIDRLIEL-----EPNEF---EWQLLKAQVQSYAGESEAAIKGFEEILRK-----DPLRV---E 218 (355)
Q Consensus 155 la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~---~ 218 (355)
.+..+..+|+|++|+..++++++. .++++ ..+.++|.+|..+|+|++|+.++++++++ .++++ .
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 444567899999999999999876 44444 46889999999999999999999999986 45555 4
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHHHh--hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 040440 219 AYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK--EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKE 287 (355)
Q Consensus 219 ~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 287 (355)
.+.++|.+|..+|+ +++|...+++|+++++. ...+|....+...++.++..++.+++|...|.++.+.
T Consensus 395 ~l~nLa~~~~~~G~-~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 395 AVMRAGLTNWHAGH-IEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999 99999999999999988 4667788888889999999999999999999888653
No 196
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.21 E-value=3.3e-09 Score=90.34 Aligned_cols=152 Identities=13% Similarity=0.111 Sum_probs=110.8
Q ss_pred HHcCCCchHH--HHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCc---hHHHHHHHHHHHHHH
Q 040440 176 IELEPNEFEW--QLLKAQVQSYAGE---SEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDK---KLNEVEKRIEKAMER 247 (355)
Q Consensus 176 ~~~~~~~~~~--~~~la~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~---~~~~a~~~~~~Al~~ 247 (355)
....|.+..+ ++..|..+...++ +.+|+.+|+++++++|++..++-.++.+|..... ...........+++.
T Consensus 187 ~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 187 QKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp HHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred hccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 3444555443 3445555555443 4678888888888888888888777777652111 011112223444443
Q ss_pred HHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q 040440 248 CKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHP 327 (355)
Q Consensus 248 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 327 (355)
.......+....++..++..+...|++++|+..+++++.++| +...|..+|.++...|++++|.+.|++++.++|....
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 334566788899999999999999999999999999999997 5778889999999999999999999999999997644
Q ss_pred H
Q 040440 328 Y 328 (355)
Q Consensus 328 ~ 328 (355)
+
T Consensus 346 ~ 346 (372)
T 3ly7_A 346 L 346 (372)
T ss_dssp H
T ss_pred H
Confidence 3
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.17 E-value=2.3e-10 Score=103.03 Aligned_cols=134 Identities=11% Similarity=-0.014 Sum_probs=114.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh--hccCCch
Q 040440 188 LKAQVQSYAGESEAAIKGFEEILRK-----DPLRV---EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK--EKKKSDL 257 (355)
Q Consensus 188 ~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~---~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~--~~~~~~~ 257 (355)
..+..+..+|+|++|+..+++++++ .++++ ..+.+++.+|..+|+ +++|...++++++++++ ...+|+.
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~-~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQA-YEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 3445577899999999999999986 35555 458899999999998 99999999999999988 5677888
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 258 RDFKLLIAQIKVMESKHSEALRVYEELVKE-----EPRDF---RPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 258 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
...+.++|.+|..+|++++|+..|++++++ .|+++ .....++.++..+|.+++|...|+++.+..
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999864 45554 456789999999999999999999987654
No 198
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.17 E-value=1.9e-10 Score=80.35 Aligned_cols=72 Identities=22% Similarity=0.332 Sum_probs=67.1
Q ss_pred CCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 254 KSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 254 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
+|.+..+++.+|.+|...|++++|+..|+++++.+|++..+|+.+|.+|...|++++|+..|++++++.|++
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 578889999999999999999999999999999999999999999999999999999999999999987654
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.16 E-value=4.7e-10 Score=80.48 Aligned_cols=82 Identities=11% Similarity=0.057 Sum_probs=74.2
Q ss_pred HHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 244 AMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 244 Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
+++.+++ ....|.+..++..+|.+|...|++++|+..|+++++.+|++..+|+.+|.++...|++++|+..|++++++.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4445555 455788899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 040440 323 PRN 325 (355)
Q Consensus 323 p~~ 325 (355)
|++
T Consensus 84 ~~~ 86 (115)
T 2kat_A 84 QSR 86 (115)
T ss_dssp HHH
T ss_pred ccc
Confidence 754
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.12 E-value=1.6e-09 Score=73.82 Aligned_cols=76 Identities=17% Similarity=0.233 Sum_probs=69.9
Q ss_pred CchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHH
Q 040440 255 SDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYRE 330 (355)
Q Consensus 255 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 330 (355)
+.....+..+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|+.+|+++++++|++.....
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 81 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQ 81 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHH
Confidence 3456788999999999999999999999999999999999999999999999999999999999999998855543
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.05 E-value=2.6e-09 Score=75.70 Aligned_cols=69 Identities=13% Similarity=0.122 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 257 LRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 257 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
....+..+|.++...|++++|+..|+++++.+|.+..+++++|.++..+|++++|+..|+++++++|++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 356788899999999999999999999999999999999999999999999999999999999999987
No 202
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.04 E-value=4.7e-08 Score=88.66 Aligned_cols=170 Identities=12% Similarity=0.014 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHcC---------CHHHHHHHHHHHHhhC-CCCHHH
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLIELE-PNEFEWQLLKAQVQSYAG---------ESEAAIKGFEEILRKD-PLRVEA 219 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~~~~~~-p~~~~~ 219 (355)
.+..+...+.+.|++++|+++|+++.+.. .-+...|..+..++...+ +.++|.++|+++.... ..+...
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 45666788889999999999999998763 224456666666665544 3688999999998864 347778
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHH
Q 040440 220 YHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE--KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP-RDFRPYL 296 (355)
Q Consensus 220 ~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~ 296 (355)
|..+...|.+.|+ +++|++++++. .....+...+..+...|.+.|+.++|.++|+++.+..- -+...|.
T Consensus 108 yn~lI~~~~~~g~--------~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~ 179 (501)
T 4g26_A 108 FTNGARLAVAKDD--------PEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELA 179 (501)
T ss_dssp HHHHHHHHHHHTC--------HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHhcCC--------HHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 8899999999999 88888888883 33455677788899999999999999999999987532 2778899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCChhH
Q 040440 297 CQGIIYTLLRKKDEAEKQFEKFRRL--VPRNHPY 328 (355)
Q Consensus 297 ~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~ 328 (355)
.+..+|.+.|+.++|.++|++..+. .|+..++
T Consensus 180 ~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~ 213 (501)
T 4g26_A 180 ALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTF 213 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHH
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHH
Confidence 9999999999999999999998764 4654444
No 203
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.02 E-value=3.1e-08 Score=81.00 Aligned_cols=183 Identities=10% Similarity=0.026 Sum_probs=123.6
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHc---------------------cCHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 040440 134 KEKEIEQHLAANPNDIEALQTLMEVRIKS---------------------QKLVEAVDVIDRLIELEPNEFEWQLLKAQV 192 (355)
Q Consensus 134 A~~~~~~~l~~~p~~~~~~~~la~~~~~~---------------------g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 192 (355)
.+.+++-.+..+|++...+...+..|..- .++..|...|.++.+ |...+ +
T Consensus 51 ~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~--------y~~ra-L 121 (301)
T 3u64_A 51 VLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGAR--------YALSS-L 121 (301)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHH--------HHHHH-H
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHH--------HHHHH-H
Confidence 47888999999999988776666655421 123455555555542 11112 1
Q ss_pred HHHcCCHHHHHH-----HHHHHH-hhCCCCHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHHHHh-hccCCc--hHHH
Q 040440 193 QSYAGESEAAIK-----GFEEIL-RKDPLRVEAYHGLVMAYDG---SDKKLNEVEKRIEKAMERCKK-EKKKSD--LRDF 260 (355)
Q Consensus 193 ~~~~g~~~~A~~-----~~~~~~-~~~p~~~~~~~~l~~~~~~---~~~~~~~a~~~~~~Al~~~~~-~~~~~~--~~~~ 260 (355)
......+.+++. -+.+++ +.+|++++.+++.|.+... ....--.++....+|...+++ +..+|. +...
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA 201 (301)
T 3u64_A 122 ETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAV 201 (301)
T ss_dssp HHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred HHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHH
Confidence 222233333332 223333 4478889988877776533 211111233334555555555 344677 5668
Q ss_pred HHHHHHHHHHc-----cCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC
Q 040440 261 KLLIAQIKVME-----SKHSEALRVYEELVKEEPRD-FRPYLCQGIIYTL-LRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 261 ~~~la~~~~~~-----g~~~~A~~~~~~~l~~~~~~-~~~~~~l~~~~~~-~g~~~~A~~~~~~~l~~~p~~ 325 (355)
+..+|.+|... |+.++|.++|+++++++|+. ..+++.+|..+.. .|++++|..++++++...|..
T Consensus 202 ~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 202 WNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 99999999995 99999999999999999975 9999999999988 599999999999999988763
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.01 E-value=9.9e-09 Score=76.18 Aligned_cols=47 Identities=23% Similarity=0.229 Sum_probs=19.3
Q ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 040440 272 SKHSEALRVYEELVKEEPRDFRPYLCQGIIYTL----LRKKDEAEKQFEKFRR 320 (355)
Q Consensus 272 g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~ 320 (355)
+++++|+.+|+++.+. .++.+.+++|.+|.. .+++++|+.+|+++.+
T Consensus 75 ~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 75 KDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 3344444444444332 233444444444444 3444444444444443
No 205
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.99 E-value=4.9e-09 Score=72.77 Aligned_cols=69 Identities=12% Similarity=0.202 Sum_probs=61.3
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCCCchH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 040440 153 QTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE-WQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYH 221 (355)
Q Consensus 153 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 221 (355)
+.+|..+...|++++|+..|+++++.+|++.. +++.+|.++...|++++|+..|+++++.+|++..++.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 73 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA 73 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 56788888999999999999999999999888 9999999999999999999999999999998887763
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.97 E-value=1.9e-08 Score=74.58 Aligned_cols=121 Identities=12% Similarity=0.022 Sum_probs=98.1
Q ss_pred ccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhc----cCchHHHH
Q 040440 162 SQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDG----SDKKLNEV 237 (355)
Q Consensus 162 ~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~~a 237 (355)
.+++++|+.+|+++.+..... +. +|.+|...+.+++|+++|+++.+. .++.+++.+|.+|.. .++
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d----- 76 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKD----- 76 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCC-----
T ss_pred ccCHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCcc-----
Confidence 367899999999999886433 44 999999999999999999999986 789999999999987 566
Q ss_pred HHHHHHHHHHHHhhccCCchHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 040440 238 EKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVM----ESKHSEALRVYEELVKEEPRDFRPYLCQG 299 (355)
Q Consensus 238 ~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~l~ 299 (355)
+++|++++++.... .+......+|.+|.. .+++++|+.+|+++.+. .+..+...++
T Consensus 77 ---~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~ 136 (138)
T 1klx_A 77 ---LRKAAQYYSKACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILN 136 (138)
T ss_dssp ---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred ---HHHHHHHHHHHHcC-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence 66666666663222 568889999999999 89999999999999887 3455555444
No 207
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.96 E-value=9e-09 Score=71.40 Aligned_cols=68 Identities=21% Similarity=0.278 Sum_probs=63.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 262 LLIAQIKVMESKHSEALRVYEELVKEEPRDFR-PYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 262 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
+..|.++...|++++|+..|+++++.+|++.. +++.+|.++...|++++|+.+|+++++++|++....
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 45688999999999999999999999999999 999999999999999999999999999999986543
No 208
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.95 E-value=1.2e-08 Score=69.69 Aligned_cols=80 Identities=13% Similarity=-0.059 Sum_probs=70.4
Q ss_pred CCchHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHH
Q 040440 254 KSDLRDFKLLIAQIKVMESK---HSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYRE 330 (355)
Q Consensus 254 ~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 330 (355)
.|++..++..+|.+++..++ .++|...++++++.+|+++.+++.+|..+++.|+|++|+.+|+++++.+|.+ ..+.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~-~~~~ 80 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN-LDRV 80 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT-CCHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-ccHH
Confidence 47788999999999987666 7999999999999999999999999999999999999999999999999984 4443
Q ss_pred HHHH
Q 040440 331 YFVD 334 (355)
Q Consensus 331 ~~~~ 334 (355)
.+..
T Consensus 81 ~i~~ 84 (93)
T 3bee_A 81 TIIE 84 (93)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 209
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.94 E-value=8.4e-09 Score=70.50 Aligned_cols=72 Identities=17% Similarity=0.074 Sum_probs=67.8
Q ss_pred CCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 040440 145 NPNDIEALQTLMEVRIKSQK---LVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLR 216 (355)
Q Consensus 145 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 216 (355)
+|++++.+..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|+|++|+.+|+++++.+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 68999999999999987666 7999999999999999999999999999999999999999999999999873
No 210
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.94 E-value=2.7e-07 Score=83.65 Aligned_cols=172 Identities=12% Similarity=-0.003 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040440 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEIL 210 (355)
Q Consensus 131 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 210 (355)
.+....+|++++...|..+..|...+..+...|+.++|..+|++++.. |.+...|+..+... ..+ +. ++++.
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~---~~---~~~l~ 266 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEE---AV---YGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCT---HH---HHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chh---HH---HHHHH
Confidence 345678999999999999999999999999999999999999999999 98877666554431 111 11 22222
Q ss_pred hhC-------------CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHcc-CHHH
Q 040440 211 RKD-------------PLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMES-KHSE 276 (355)
Q Consensus 211 ~~~-------------p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~ 276 (355)
+.. +....+|...+....+.++ .+.+...+++| . .. +....++...|.+....+ +.+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~-~~~AR~i~~~A-~----~~--~~~~~v~i~~A~lE~~~~~d~~~ 338 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRG-LELFRKLFIEL-G----NE--GVGPHVFIYCAFIEYYATGSRAT 338 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHH-T----TS--CCCHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCC-HHHHHHHHHHh-h----CC--CCChHHHHHHHHHHHHHCCChHH
Confidence 110 0112345555555555544 66777777776 2 11 123445555566655555 4777
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 277 ALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKF 318 (355)
Q Consensus 277 A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 318 (355)
|..+|+.+++..|+++..|...+......|+.+.|..+|+++
T Consensus 339 ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 339 PYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777777777766666677777777777777777765
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.92 E-value=2.1e-08 Score=74.01 Aligned_cols=95 Identities=15% Similarity=0.119 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHcC-C-CchHHHHHHHHHHHHcCCHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQ---KLVEAVDVIDRLIELE-P-NEFEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~-~-~~~~~~~~la~~~~~~g~~~~A~~ 204 (355)
....+.+.|.+.++.++.+.++.+.+|.++.+.+ +.++++.+++.+++.+ | +..+.++.+|..+++.|+|++|++
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 4567788899999989999999999999999988 7779999999999998 6 567899999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHH
Q 040440 205 GFEEILRKDPLRVEAYHGLV 224 (355)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~l~ 224 (355)
+++++++.+|++..+....-
T Consensus 93 y~~~lL~ieP~n~QA~~Lk~ 112 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKELER 112 (152)
T ss_dssp HHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHH
Confidence 99999999999988765443
No 212
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.87 E-value=1e-06 Score=79.87 Aligned_cols=169 Identities=9% Similarity=0.019 Sum_probs=134.8
Q ss_pred hccC-CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcc---------CHHHHHHHHHHHHHcCC-CchHHHHHHHHHH
Q 040440 126 REDV-SYEEKEKEIEQHLAAN-PNDIEALQTLMEVRIKSQ---------KLVEAVDVIDRLIELEP-NEFEWQLLKAQVQ 193 (355)
Q Consensus 126 ~~~~-~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 193 (355)
+.+. ++++|+++|+++.+.. .-+...|..+..++...+ +.++|.++|+++....- -+...|..+...|
T Consensus 36 c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~ 115 (501)
T 4g26_A 36 CSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLA 115 (501)
T ss_dssp TTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 4444 9999999999998853 236778888888876554 47899999999987632 3567888999999
Q ss_pred HHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHHHH
Q 040440 194 SYAGESEAAIKGFEEILRKD-PLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE--KKKSDLRDFKLLIAQIKVM 270 (355)
Q Consensus 194 ~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~--~~~~~~~~~~~~la~~~~~ 270 (355)
.+.|++++|.++|+++.+.. ..+...|..+...|.+.|+ .++|.+++++. .....+...+..+...|.+
T Consensus 116 ~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~--------~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 116 VAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGD--------ADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCC--------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 99999999999999999874 3478889999999999999 89999999883 4455667788999999999
Q ss_pred ccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHH
Q 040440 271 ESKHSEALRVYEELVKE--EPRDFRPYLCQGIIYT 303 (355)
Q Consensus 271 ~g~~~~A~~~~~~~l~~--~~~~~~~~~~l~~~~~ 303 (355)
.|+.++|.++++++.+. .| +..++..+...+.
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~p-s~~T~~~l~~~F~ 221 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQV-SKSTFDMIEEWFK 221 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSB-CHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCc-CHHHHHHHHHHHh
Confidence 99999999999999764 34 4455555544443
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.83 E-value=6e-08 Score=71.59 Aligned_cols=91 Identities=14% Similarity=0.079 Sum_probs=75.3
Q ss_pred HHHHHHHHh-hccCCchHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhC-C-CChHHHHHHHHHHHHcCCHHHHHHHH
Q 040440 242 EKAMERCKK-EKKKSDLRDFKLLIAQIKVMES---KHSEALRVYEELVKEE-P-RDFRPYLCQGIIYTLLRKKDEAEKQF 315 (355)
Q Consensus 242 ~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 315 (355)
..+.+.+.+ ....+.+.+..+.+|+++.+.+ +.++++..++++++.+ | ++.+.++++|..++++|+|++|++++
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 333344433 3345678899999999999988 7779999999999998 6 56889999999999999999999999
Q ss_pred HHHHHhCCCChhHHHHH
Q 040440 316 EKFRRLVPRNHPYREYF 332 (355)
Q Consensus 316 ~~~l~~~p~~~~~~~~~ 332 (355)
+++++++|++.......
T Consensus 95 ~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 95 RGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHCTTCHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHH
Confidence 99999999986654443
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.79 E-value=1.7e-07 Score=79.92 Aligned_cols=144 Identities=15% Similarity=0.066 Sum_probs=101.2
Q ss_pred HHHcCCCCHHHH--HHHHHHHHHcc---CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCH----H---HHH-HHHH
Q 040440 141 HLAANPNDIEAL--QTLMEVRIKSQ---KLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGES----E---AAI-KGFE 207 (355)
Q Consensus 141 ~l~~~p~~~~~~--~~la~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----~---~A~-~~~~ 207 (355)
+....|.+..+| +..|..++..+ +..+|+.+|+++++++|+...++..++.+|.....+ . +++ ..++
T Consensus 186 ~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~ 265 (372)
T 3ly7_A 186 LQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID 265 (372)
T ss_dssp HHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Confidence 344566766554 34556666544 458899999999999999999988888777532111 1 111 1222
Q ss_pred H--HHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 040440 208 E--ILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELV 285 (355)
Q Consensus 208 ~--~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 285 (355)
. .+..+|.++.++..++..+...|+ .+.+...+++|+.+ ++ +...+..+|.++...|++++|++.|++++
T Consensus 266 a~~a~~~~~~~a~~~~alal~~l~~gd-~d~A~~~l~rAl~L------n~-s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 266 NIVTLPELNNLSIIYQIKAVSALVKGK-TDESYQAINTGIDL------EM-SWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp HHHTCGGGTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH------CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcccCCcCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhc------CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2 224468899999999988888888 44444444444444 33 46677899999999999999999999999
Q ss_pred HhCCCCh
Q 040440 286 KEEPRDF 292 (355)
Q Consensus 286 ~~~~~~~ 292 (355)
.++|...
T Consensus 338 rL~P~~~ 344 (372)
T 3ly7_A 338 NLRPGAN 344 (372)
T ss_dssp HHSCSHH
T ss_pred hcCCCcC
Confidence 9999654
No 215
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.79 E-value=1e-06 Score=79.82 Aligned_cols=192 Identities=8% Similarity=0.007 Sum_probs=129.0
Q ss_pred CHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHc--c-----CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHH
Q 040440 130 SYEEKEKEIEQHLAANPN-DIEALQTLMEVRIKS--Q-----KLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEA 201 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~--g-----~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 201 (355)
.+..|...++.+....+. +...|......-... | ..+.....|++++...|..+..|+..+..+...|+.++
T Consensus 152 ~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ 231 (493)
T 2uy1_A 152 IFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEK 231 (493)
T ss_dssp HHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 344455556655543322 444565544432221 0 03457789999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh----hccCCchHHHHHHHHHHHHHccCHHHH
Q 040440 202 AIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK----EKKKSDLRDFKLLIAQIKVMESKHSEA 277 (355)
Q Consensus 202 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A 277 (355)
|...|++++.. |.+...+...+... ..++ ..+.+.++...++. .........+|...+..+.+.++.+.|
T Consensus 232 ar~i~erAi~~-P~~~~l~~~y~~~~-e~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~A 305 (493)
T 2uy1_A 232 AKKVVERGIEM-SDGMFLSLYYGLVM-DEEA----VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELF 305 (493)
T ss_dssp HHHHHHHHHHH-CCSSHHHHHHHHHT-TCTH----HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHhhc-chhH----HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999 99887776555442 1122 11111111110110 001122346688888888889999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChhH
Q 040440 278 LRVYEELVKEEPRDFRPYLCQGIIYTLLR-KKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
..+|+++ ...+....+|...+.+....| +.+.|..+|+.+++..|+.+.+
T Consensus 306 R~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~ 356 (493)
T 2uy1_A 306 RKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLL 356 (493)
T ss_dssp HHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHH
Confidence 9999999 433335667777777777666 6999999999999999987654
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.75 E-value=8.7e-08 Score=85.03 Aligned_cols=115 Identities=10% Similarity=-0.018 Sum_probs=93.1
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHc-----CCCch---HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH---H
Q 040440 155 LMEVRIKSQKLVEAVDVIDRLIEL-----EPNEF---EWQLLKAQVQSYAGESEAAIKGFEEILRK-----DPLRV---E 218 (355)
Q Consensus 155 la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~---~ 218 (355)
...-+...|+|++|+..++++++. .++++ ..+.++|.+|..+|+|++|+.+++++++. .++++ .
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 344566789999999999999975 44454 46888999999999999999999999976 35555 4
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHHHh--hccCCchHHHHHHHHHHHHH
Q 040440 219 AYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK--EKKKSDLRDFKLLIAQIKVM 270 (355)
Q Consensus 219 ~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~--~~~~~~~~~~~~~la~~~~~ 270 (355)
.++++|.+|..+|+ +++|...+++|+++++. ..++|....++..++.+...
T Consensus 373 ~l~nLa~~~~~~g~-~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 373 QVMKVGKLQLHQGM-FPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 58899999999998 89999999999999988 45666667777777766654
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.73 E-value=2.2e-07 Score=65.07 Aligned_cols=77 Identities=13% Similarity=0.038 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-------CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELE-------PNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAY 220 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 220 (355)
++.-.+.+|..++..|+|+.|+..|+++++.. .....++..+|.++.++|++++|+.+++++++..|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 35567899999999999999999999999863 34567899999999999999999999999999999999887
Q ss_pred HHHH
Q 040440 221 HGLV 224 (355)
Q Consensus 221 ~~l~ 224 (355)
.++.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 7665
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.70 E-value=1.5e-07 Score=83.44 Aligned_cols=100 Identities=16% Similarity=0.127 Sum_probs=82.4
Q ss_pred cCchHHHHHHHHHHHHHHHHh--hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCC---hHHHHHHH
Q 040440 230 SDKKLNEVEKRIEKAMERCKK--EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKE-----EPRD---FRPYLCQG 299 (355)
Q Consensus 230 ~~~~~~~a~~~~~~Al~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~~~~---~~~~~~l~ 299 (355)
.|+ +++|...+++++++.++ ...++.....+.++|.+|..+|+|++|+.+++++++. .+++ ...++++|
T Consensus 311 ~g~-~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 311 YKS-PSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TSC-HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred ccC-HHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 344 77888888888888877 4566777888999999999999999999999999964 3444 45689999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh-----CCCChhHHH
Q 040440 300 IIYTLLRKKDEAEKQFEKFRRL-----VPRNHPYRE 330 (355)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~ 330 (355)
.+|..+|++++|+.+|++++++ .|+++....
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 9999999999999999999885 466655544
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.65 E-value=1.2e-07 Score=84.03 Aligned_cols=100 Identities=7% Similarity=-0.067 Sum_probs=84.8
Q ss_pred HHcCCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh--hccCCchHHHHHH
Q 040440 194 SYAGESEAAIKGFEEILRK-----DPLRV---EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK--EKKKSDLRDFKLL 263 (355)
Q Consensus 194 ~~~g~~~~A~~~~~~~~~~-----~p~~~---~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~--~~~~~~~~~~~~~ 263 (355)
...|+|++|+..+++++++ .|+++ ..+.+++.+|..+|+ +++|..+++++++++++ ...+|+....+.+
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~-~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 387 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQD-WEGALKYGQKIIKPYSKHYPVYSLNVASMWLK 387 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 3568999999999999986 45665 457899999999998 99999999999999998 4667888888999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHh-----CCCChHH
Q 040440 264 IAQIKVMESKHSEALRVYEELVKE-----EPRDFRP 294 (355)
Q Consensus 264 la~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~~ 294 (355)
+|.+|..+|++++|+..|++++++ .|+++.+
T Consensus 388 La~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 388 LGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999999999999999874 4555544
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.64 E-value=1.8e-07 Score=82.95 Aligned_cols=112 Identities=8% Similarity=-0.037 Sum_probs=89.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh--hccCCchHHH
Q 040440 191 QVQSYAGESEAAIKGFEEILRK-----DPLRV---EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK--EKKKSDLRDF 260 (355)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~~~~~-----~p~~~---~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~--~~~~~~~~~~ 260 (355)
.-+..+|+|++|+..+++++++ .++++ ..+.+++.+|..+|+ +++|+.+++++++++++ ...+|.....
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~-~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGL-LEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 3366789999999999999976 35554 457899999999998 89999999999999988 4667777788
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCChH---HHHHHHHHHH
Q 040440 261 KLLIAQIKVMESKHSEALRVYEELVKE-----EPRDFR---PYLCQGIIYT 303 (355)
Q Consensus 261 ~~~la~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~---~~~~l~~~~~ 303 (355)
+.++|.+|..+|++++|+..|++++++ .|+++. ++.+|+.+..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA 424 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999864 455543 3344555443
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.64 E-value=4.7e-07 Score=63.31 Aligned_cols=71 Identities=10% Similarity=-0.026 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 258 RDFKLLIAQIKVMESKHSEALRVYEELVKEE-------PRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 258 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
..-.+.+|..++..|+|+.|+..|+++++.. .....++..+|.++.++|++++|+.++++++++.|++...
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 4456789999999999999999999999863 2356789999999999999999999999999999998544
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.55 E-value=4e-07 Score=74.46 Aligned_cols=86 Identities=10% Similarity=0.089 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHH-cCCHH
Q 040440 130 SYEEKEKEIEQHLAANPN--DIEALQTLMEVRIKS-----QKLVEAVDVIDRLIELEPNE-FEWQLLKAQVQSY-AGESE 200 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~-----g~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~-~g~~~ 200 (355)
...+|...++++++.+|+ +..+|..+|.+|... |+.++|..+|+++++++|+. ...++.+|..++. .|+++
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 567889999999999999 677999999999985 99999999999999999975 9999999998887 49999
Q ss_pred HHHHHHHHHHhhCCC
Q 040440 201 AAIKGFEEILRKDPL 215 (355)
Q Consensus 201 ~A~~~~~~~~~~~p~ 215 (355)
++..++++++...|.
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 999999999998765
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.36 E-value=7.6e-06 Score=58.11 Aligned_cols=95 Identities=14% Similarity=0.090 Sum_probs=81.4
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHH---HHHHHHHHHHcC-C-CchHHHHHHHHHHHHcCCHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVE---AVDVIDRLIELE-P-NEFEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~~~~~~-~-~~~~~~~~la~~~~~~g~~~~A~~ 204 (355)
....+.+.|.+.+..++...++.+.+|.++++.++... ++.+++..+..+ | ...+.++.+|..+++.|+|++|+.
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 44566788888888888899999999999998887766 999999998876 4 456789999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHH
Q 040440 205 GFEEILRKDPLRVEAYHGLV 224 (355)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~l~ 224 (355)
+++.+++..|++..+.....
T Consensus 96 ~~~~lL~~eP~n~QA~~Lk~ 115 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAKELER 115 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHH
Confidence 99999999999988765433
No 224
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.29 E-value=1.1e-05 Score=59.84 Aligned_cols=124 Identities=10% Similarity=0.026 Sum_probs=73.0
Q ss_pred hccCCHHHHHHHHHHHHHcCCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcC---CCchHHHHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPND---------IEALQTLMEVRIKSQKLVEAVDVIDRLIELE---PNEFEWQLLKAQVQ 193 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~ 193 (355)
++.+.|+.|+-....++....++ ..++..+|+.++..|+|.+|...|+++++.. +........++.
T Consensus 31 ~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~-- 108 (167)
T 3ffl_A 31 AAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGN-- 108 (167)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------
T ss_pred HHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccc--
Confidence 55556666666666655432211 2356666667777777777777777665441 111111101100
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHH
Q 040440 194 SYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKV 269 (355)
Q Consensus 194 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~ 269 (355)
...+.. ... .+.+.++.+.++.||...++ +++|+..++.+......+.+...||++|.
T Consensus 109 --~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~--------~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 109 --SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQ--------DKDAIAILDGIPSRQRTPKINMLLANLYK 166 (167)
T ss_dssp -----------------C-CCCHHHHHHHHHHHHHHTTC--------HHHHHHHHHTSCGGGCCHHHHHHHHHHCC
T ss_pred --cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCC--------HHHHHHHHhcCCchhcCHHHHHHHHHHhc
Confidence 000000 011 13356788999999999999 99999999998777778888888888763
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.28 E-value=8.3e-06 Score=57.91 Aligned_cols=79 Identities=15% Similarity=0.095 Sum_probs=68.0
Q ss_pred CCchHHHHHHHHHHHHHccCHHH---HHHHHHHHHHhC-C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 254 KSDLRDFKLLIAQIKVMESKHSE---ALRVYEELVKEE-P-RDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 254 ~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~~l~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
.+......+.+|+++.+.++... ++..++..+..+ | ...+..+.+|..+++.|+|++|+.+++.+++..|+|...
T Consensus 31 ~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 31 GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Confidence 45778899999999998887766 999999998876 4 466889999999999999999999999999999999666
Q ss_pred HHHH
Q 040440 329 REYF 332 (355)
Q Consensus 329 ~~~~ 332 (355)
..+.
T Consensus 111 ~~Lk 114 (126)
T 1nzn_A 111 KELE 114 (126)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.13 E-value=6e-05 Score=54.72 Aligned_cols=116 Identities=7% Similarity=-0.066 Sum_probs=79.3
Q ss_pred CCCchHHHHHHHHHHHHcCCH------HHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhc
Q 040440 179 EPNEFEWQLLKAQVQSYAGES------EAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEK 252 (355)
Q Consensus 179 ~~~~~~~~~~la~~~~~~g~~------~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~ 252 (355)
.|++.+.|..........|+. ++-++.|++++..-|.... .
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~---------------------------------~ 55 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKY---------------------------------G 55 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGG---------------------------------T
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCcccc---------------------------------c
Confidence 566666666666655555666 5555666666655443210 0
Q ss_pred cCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 253 KKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 253 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
.......+|...|.. ...++.++|.++|+.++..+..-..+|...|....++|+...|.+.+.+++...|.....
T Consensus 56 ~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 56 QNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp TCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred cHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 011112334444544 455899999999999998877778889999999999999999999999999999986333
No 227
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.07 E-value=0.00019 Score=51.74 Aligned_cols=78 Identities=9% Similarity=-0.010 Sum_probs=67.3
Q ss_pred CCchHHHHHHHHHHHHHccCH---HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 254 KSDLRDFKLLIAQIKVMESKH---SEALRVYEELVKEEPR-DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 254 ~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~~l~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
........+.+|+++.+..+. .+++..++..+...|. ..+..+.+|..++++|+|++|+.+.+.+++..|+|....
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 356788899999999987654 5799999999998884 567899999999999999999999999999999996665
Q ss_pred HH
Q 040440 330 EY 331 (355)
Q Consensus 330 ~~ 331 (355)
.+
T Consensus 115 ~L 116 (144)
T 1y8m_A 115 AL 116 (144)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 228
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.01 E-value=0.00027 Score=50.29 Aligned_cols=81 Identities=9% Similarity=-0.032 Sum_probs=67.9
Q ss_pred cCCchHHHHHHHHHHHHHccCH---HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 253 KKSDLRDFKLLIAQIKVMESKH---SEALRVYEELVKEEPR-DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 253 ~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~~l~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
.........+.+|+++++..+. .+++..++..++..|. ..+.++.+|..+.++|+|++|+.+.+.+++..|+|...
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 3445678889999999987654 5799999999998884 57889999999999999999999999999999999666
Q ss_pred HHHHH
Q 040440 329 REYFV 333 (355)
Q Consensus 329 ~~~~~ 333 (355)
..+..
T Consensus 115 ~~Lk~ 119 (134)
T 3o48_A 115 GALKS 119 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54433
No 229
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.97 E-value=6.8e-05 Score=55.68 Aligned_cols=133 Identities=10% Similarity=0.045 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch---------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCH
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF---------EWQLLKAQVQSYAGESEAAIKGFEEILRKD---PLRV 217 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---p~~~ 217 (355)
.++..-...++..|.|+.|+-....++....++. .++..+|..++..|+|..|...|+++++.. +...
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3456666777888999999999888776632222 267888999999999999999999988753 2332
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHH
Q 040440 218 EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLC 297 (355)
Q Consensus 218 ~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 297 (355)
.....++. ... +.. ......+.++.+.++.||.+.|++++|+..++.+-.. ...+.+...
T Consensus 101 s~~~~~~~----~ss--------~p~-------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~ 160 (167)
T 3ffl_A 101 KVRPSTGN----SAS--------TPQ-------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINML 160 (167)
T ss_dssp -----------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHH
T ss_pred Cccccccc----cCC--------Ccc-------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHH
Confidence 22111110 000 000 0112456788888999999999999999988764221 235667777
Q ss_pred HHHHH
Q 040440 298 QGIIY 302 (355)
Q Consensus 298 l~~~~ 302 (355)
||.+|
T Consensus 161 LakLy 165 (167)
T 3ffl_A 161 LANLY 165 (167)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 77665
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.81 E-value=0.00091 Score=48.61 Aligned_cols=120 Identities=13% Similarity=0.047 Sum_probs=80.1
Q ss_pred cCCCCHHHHHHHHHHHHHccCH------HHHHHHHHHHHHcCCCch--------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 144 ANPNDIEALQTLMEVRIKSQKL------VEAVDVIDRLIELEPNEF--------EWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 144 ~~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~~~~~~~~~~--------~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
..|++.+.|.......-..|+. ++-++.|++++..-|... ..|...+.. ...+|.++|.+.|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 5799999999999998888999 999999999998766432 123444432 3445666666666665
Q ss_pred HhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 040440 210 LRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP 289 (355)
Q Consensus 210 ~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 289 (355)
+...... ..+|...|....++|+..+|.+++.+++.+.|
T Consensus 87 ~~~hKkF-----------------------------------------AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 87 RANCKKF-----------------------------------------AFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHCTTB-----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhHHH-----------------------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 5543222 45566667777788888888888888888888
Q ss_pred CChHHHHHHHHHHHHcC
Q 040440 290 RDFRPYLCQGIIYTLLR 306 (355)
Q Consensus 290 ~~~~~~~~l~~~~~~~g 306 (355)
...... ..+..-.+.|
T Consensus 126 k~~~~l-e~a~~nl~~~ 141 (161)
T 4h7y_A 126 VPLEML-EIALRNLNLQ 141 (161)
T ss_dssp BCHHHH-HHHHHHHHTT
T ss_pred CcHHHH-HHHHHhhhcC
Confidence 654433 3333333444
No 231
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00096 Score=62.71 Aligned_cols=124 Identities=10% Similarity=0.105 Sum_probs=87.7
Q ss_pred HcCC-HHHHHHHHHHHHhhCCCCHHHHH-HHHHHHhccCchHHHHHHHHHHHHHHHHh-hcc-C----------CchHHH
Q 040440 195 YAGE-SEAAIKGFEEILRKDPLRVEAYH-GLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKK-K----------SDLRDF 260 (355)
Q Consensus 195 ~~g~-~~~A~~~~~~~~~~~p~~~~~~~-~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~-~----------~~~~~~ 260 (355)
..|+ ++.|++.+++..+.+|.....+. .+..+....++..-++.....++++.+.. ... . +....+
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 3455 57899999999998886544332 12222233333344455556666654332 111 1 112345
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 261 KLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKF 318 (355)
Q Consensus 261 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 318 (355)
+...+..+...|+++-|+++.++++...|.+...|+.|+.+|..+|+|+.|+-.+..+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 6667888899999999999999999999999999999999999999999999887765
No 232
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.69 E-value=0.0025 Score=45.96 Aligned_cols=77 Identities=12% Similarity=-0.005 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHHHHHHccCH---HHHHHHHHHHHHcCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 040440 146 PNDIEALQTLMEVRIKSQKL---VEAVDVIDRLIELEP-NEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYH 221 (355)
Q Consensus 146 p~~~~~~~~la~~~~~~g~~---~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 221 (355)
.-..++.+.+|.++.+..+. .+++.+++..+...| ...+.++.+|..+++.|+|++|+.+.+.+++..|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45788999999999987654 579999999999888 45668999999999999999999999999999999987754
Q ss_pred H
Q 040440 222 G 222 (355)
Q Consensus 222 ~ 222 (355)
.
T Consensus 116 L 116 (144)
T 1y8m_A 116 L 116 (144)
T ss_dssp H
T ss_pred H
Confidence 3
No 233
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.62 E-value=0.0012 Score=46.97 Aligned_cols=77 Identities=12% Similarity=-0.015 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHHHHccCH---HHHHHHHHHHHHcCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 040440 148 DIEALQTLMEVRIKSQKL---VEAVDVIDRLIELEPN-EFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGL 223 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~---~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 223 (355)
.+.+.+.+|.++++..+. .+++.+++..++.+|. ..+.++.+|..+++.|+|++|+++.+.+++..|++..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 678899999999877654 5699999999988884 467899999999999999999999999999999998876443
Q ss_pred H
Q 040440 224 V 224 (355)
Q Consensus 224 ~ 224 (355)
.
T Consensus 119 ~ 119 (134)
T 3o48_A 119 S 119 (134)
T ss_dssp H
T ss_pred H
Confidence 3
No 234
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.49 E-value=0.0036 Score=54.28 Aligned_cols=172 Identities=13% Similarity=-0.031 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHH-----HHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHH----
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEW-----QLLKAQVQSY-AGESEAAIKGFEEILRKDPLRVEA---- 219 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~---- 219 (355)
.+.+.+|..|...|++++-.+++......-+.-+.+ ...+...+.. -+..+.-++.+.++++...+....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999999999999988765443322222 2222233322 355666677777777653322222
Q ss_pred --HHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCh--
Q 040440 220 --YHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEE---PRDF-- 292 (355)
Q Consensus 220 --~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---~~~~-- 292 (355)
-..++..|...|+ +.++...+.+..+.+++........+++.....+|...|++.++...+.++.... +.++
T Consensus 100 ~l~~kL~~l~~~~~~-y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 100 SLEARLIALYFDTAL-YTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2378999999999 4444444444444444333334456668888899999999999999999987542 1232
Q ss_pred --HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhC
Q 040440 293 --RPYLCQGIIYT-LLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 293 --~~~~~l~~~~~-~~g~~~~A~~~~~~~l~~~ 322 (355)
.....-|..+. ..++|.+|..+|-++++-.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 34556688888 8999999999999987543
No 235
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.13 E-value=0.026 Score=48.91 Aligned_cols=139 Identities=14% Similarity=0.090 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchH
Q 040440 184 EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRV-----EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLR 258 (355)
Q Consensus 184 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~ 258 (355)
.+.+.+|.+|...|++++-.+++.......+.-+ .....+...+....+..+.-.....++++..+..+...-..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999998887665533322 23445566665555545555555666666655422221122
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--C----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 259 DFKLLIAQIKVMESKHSEALRVYEELVKEEPR--D----FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 259 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
.+-..+|.+|+..|+|.+|.+.+.++.+.... + .+++..-..+|...|++.++...+.++....
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 34558899999999999999999998874321 2 3567777889999999999999999987653
No 236
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.90 E-value=0.017 Score=55.87 Aligned_cols=83 Identities=7% Similarity=-0.014 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc----CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRLIEL----EPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKD-PLRVEAYHGLV 224 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~ 224 (355)
..+..+...|.+.|+.++|..+|+++.+. ..-+...|..+...|++.|+.++|.++|+++.+.. .-|...|..+.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 34666677777777777777777654432 12244566666666777777777777777776653 23555666666
Q ss_pred HHHhccCc
Q 040440 225 MAYDGSDK 232 (355)
Q Consensus 225 ~~~~~~~~ 232 (355)
.++++.|+
T Consensus 208 ~glcK~G~ 215 (1134)
T 3spa_A 208 QCMGRQDQ 215 (1134)
T ss_dssp HHHHHHTC
T ss_pred HHHHhCCC
Confidence 66666665
No 237
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.86 E-value=0.027 Score=54.47 Aligned_cols=97 Identities=8% Similarity=-0.043 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh--ccCCch
Q 040440 184 EWQLLKAQVQSYAGESEAAIKGFEEILRK----DPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE--KKKSDL 257 (355)
Q Consensus 184 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~--~~~~~~ 257 (355)
..+..+...|++.|+.++|.++|+++.+. -.-+...|..+...|++.|+ +++|++++++. .....+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~--------~~eA~~Lf~eM~~~G~~PD 199 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGA--------FKELVYVLFMVKDAGLTPD 199 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCC--------HHHHHHHHHHHHHcCCCCc
Confidence 35778889999999999999999886543 24577889999999999999 99999999983 445566
Q ss_pred HHHHHHHHHHHHHccC-HHHHHHHHHHHHHhC
Q 040440 258 RDFKLLIAQIKVMESK-HSEALRVYEELVKEE 288 (355)
Q Consensus 258 ~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~ 288 (355)
...|..+..++.+.|+ .++|.++|+++.+..
T Consensus 200 vvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 200 LLSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 7778888888999887 578899999998753
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.012 Score=55.29 Aligned_cols=111 Identities=11% Similarity=0.086 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--H-ccCHHHHHHHHHHHHHc--------CCCch----------HHHHHH
Q 040440 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRI--K-SQKLVEAVDVIDRLIEL--------EPNEF----------EWQLLK 189 (355)
Q Consensus 131 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~--~-~g~~~~A~~~~~~~~~~--------~~~~~----------~~~~~l 189 (355)
++.|+.++++..+.+|.....+ ..+.+.. . ..+--+|+..+.+.++. .+.+. ..+..-
T Consensus 265 ~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Q 343 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQ 343 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHH
Confidence 5789999999999998764432 2222222 1 22344577777776632 22221 234445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 040440 190 AQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 190 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
+..+...|+++-|+++.++++...|.....|+.|+.+|...|+ |+.|+-.+..
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d--------~e~ALLtLNS 396 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEE--------YEKALFAINS 396 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC--------HHHHHHHHHH
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhcc--------HHHHHHHHhc
Confidence 6667789999999999999999999999999999999999999 7777766655
No 239
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.81 E-value=0.054 Score=43.77 Aligned_cols=121 Identities=10% Similarity=0.075 Sum_probs=70.4
Q ss_pred HHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHH
Q 040440 158 VRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEV 237 (355)
Q Consensus 158 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a 237 (355)
..++.|+.++|++.....++.+|.+......+..+++-.|+++.|.+-++-+.+++|+.......+-.+. +
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI----~----- 76 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV----K----- 76 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH----H-----
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH----H-----
Confidence 3456677777887777777777877777777777777788888888877777777776544321111100 0
Q ss_pred HHHHHHHHH-HHHh-----hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 040440 238 EKRIEKAME-RCKK-----EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPR 290 (355)
Q Consensus 238 ~~~~~~Al~-~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 290 (355)
-+...+ +|.. .-..+........-+......|+.++|.+.-.++++..|.
T Consensus 77 ---aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 77 ---AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp ---HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred ---HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 011111 1111 0111122222333344455668888888888888777653
No 240
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.73 E-value=0.067 Score=51.31 Aligned_cols=132 Identities=11% Similarity=-0.001 Sum_probs=75.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCc
Q 040440 153 QTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 153 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 232 (355)
..++..+...|.+++|++..+ +....+ ......|++++|.+..+. .++...|..+|..+...++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~f---~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~ 696 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQDQKF---ELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFN 696 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CHHHHH---HHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCChHHheecCC--------Ccchhe---ehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCC
Confidence 556666677788777776553 222222 334567888888777532 3567888888888888888
Q ss_pred hHHHHHHHHHHHHHHHHhhccC---------CchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 040440 233 KLNEVEKRIEKAMERCKKEKKK---------SDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYT 303 (355)
Q Consensus 233 ~~~~a~~~~~~Al~~~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~ 303 (355)
++.|.+.|.+.... ..+.+.+..++.+....|+++.|...|.+. .+ +.....+|.
T Consensus 697 --------~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~-----g~---~~~a~~~~~ 760 (814)
T 3mkq_A 697 --------FKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIA-----GD---IQGAKDLLI 760 (814)
T ss_dssp --------HHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----TC---HHHHHHHHH
T ss_pred --------HHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHc-----CC---HHHHHHHHH
Confidence 66666666552221 122233344455555556665555555432 01 122345566
Q ss_pred HcCCHHHHHHHHH
Q 040440 304 LLRKKDEAEKQFE 316 (355)
Q Consensus 304 ~~g~~~~A~~~~~ 316 (355)
+.+++++|..+-+
T Consensus 761 ~~~~~~~A~~lA~ 773 (814)
T 3mkq_A 761 KSQRFSEAAFLGS 773 (814)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCChHHHHHHHH
Confidence 6666666665543
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.22 Score=44.22 Aligned_cols=183 Identities=12% Similarity=0.049 Sum_probs=118.1
Q ss_pred CCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHH---HH-HcCC
Q 040440 129 VSYEEKEKEIEQHLAA------NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQV---QS-YAGE 198 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~---~~-~~g~ 198 (355)
+++++|++.+...-+. .+....+...+...+...|+|+...+.+.-..........+-..+... +. ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 3677788776444321 233567788899999999999998888766554443333332222211 11 1222
Q ss_pred HHHHHHHHHHHHhhC----CC-------CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhc-------cCCchHHH
Q 040440 199 SEAAIKGFEEILRKD----PL-------RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEK-------KKSDLRDF 260 (355)
Q Consensus 199 ~~~A~~~~~~~~~~~----p~-------~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~-------~~~~~~~~ 260 (355)
.+. +.....+..- .+ .......++.+|...|+ +.+|.+++..+. ......++
T Consensus 110 ~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~--------~~eA~~iL~~l~~Et~~~~~~~~kve~ 179 (445)
T 4b4t_P 110 LDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGK--------IDEAADILCELQVETYGSMEMSEKIQF 179 (445)
T ss_dssp THH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHCSSSCHHHHHHH
T ss_pred hhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 221 1112222221 11 23445788999999999 888888877721 11233556
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH---hCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 261 KLLIAQIKVMESKHSEALRVYEELVK---EEPRD----FRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 261 ~~~la~~~~~~g~~~~A~~~~~~~l~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
+....++|...+++.+|...++++.. ..+.. ...+...|.++...++|.+|-.+|..+...
T Consensus 180 ~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 180 ILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 78889999999999999999998742 22223 245677899999999999999999988764
No 242
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.074 Score=40.18 Aligned_cols=45 Identities=18% Similarity=0.044 Sum_probs=29.2
Q ss_pred HHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 160 IKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 160 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
++.|+++.|.+..+++ ++...|..+|......|+++-|..+|.++
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 4566777776666543 34556677777777777777776666654
No 243
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.49 E-value=0.019 Score=46.31 Aligned_cols=68 Identities=18% Similarity=0.164 Sum_probs=58.8
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 040440 268 KVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDN 335 (355)
Q Consensus 268 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 335 (355)
..+.|+.++|++..+..++.+|.|......+..+++-.|+|+.|.+.++.+.+++|+.......+...
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l 74 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL 74 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999875444343333
No 244
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.47 E-value=0.11 Score=49.83 Aligned_cols=49 Identities=16% Similarity=0.074 Sum_probs=41.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 156 MEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 156 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
.......|++++|.+..+. .++...|..+|..+.+.|+++.|+++|.++
T Consensus 659 f~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 659 FELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3456788999999998653 356789999999999999999999999986
No 245
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.19 Score=37.96 Aligned_cols=108 Identities=8% Similarity=-0.004 Sum_probs=69.4
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHH
Q 040440 182 EFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFK 261 (355)
Q Consensus 182 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~ 261 (355)
+++..+.++ ...|+++.|.+..++. ++...|..+|......|+ ++-|.++|.+.++.
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn--------~~lAe~cy~~~~D~------- 63 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGN--------ASLAEMIYQTQHSF------- 63 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTC--------HHHHHHHHHHTTCH-------
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCC--------hHHHHHHHHHhCCH-------
Confidence 445555554 4789999999998765 678899999999999999 88888888774332
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 262 LLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEK 317 (355)
Q Consensus 262 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 317 (355)
-.+..+|.-.|+.++-.+.-+.+..... +.....++..+|+++++++.|.+
T Consensus 64 ~~L~~Ly~~tg~~e~L~kla~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 64 DKLSFLYLVTGDVNKLSKMQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 2233445556666555555444433321 12223445566666666666644
No 246
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.021 Score=50.55 Aligned_cols=65 Identities=11% Similarity=0.045 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC---CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELE---PNEFEWQLLKAQVQSYAGESEAAIKGFEEILRK 212 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 212 (355)
-..++..+|..|...|++++|.+.|.++.... ....+.++....++...+++..+...++++...
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34578889999999999999999999987652 234567777888888889999998888887655
No 247
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.37 E-value=0.19 Score=37.30 Aligned_cols=89 Identities=15% Similarity=0.145 Sum_probs=66.0
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----------------CCCchH-HHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL-----------------EPNEFE-WQL 187 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----------------~~~~~~-~~~ 187 (355)
|-.++|.+++-.+. .-+...+.+....||...++|..|+..+++.++- +|.+.+ .+.
T Consensus 44 yyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~ 118 (242)
T 3kae_A 44 YLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFES 118 (242)
T ss_dssp HHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHH
T ss_pred hhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHH
Confidence 55667777766553 2356777888888999999999999999998832 233333 466
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 040440 188 LKAQVQSYAGESEAAIKGFEEILRKDPLRVEA 219 (355)
Q Consensus 188 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 219 (355)
.+|.++.+.|+.++|+.+|.......+-...+
T Consensus 119 l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 119 LLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence 78888899999999999998888887755443
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.32 E-value=0.085 Score=45.92 Aligned_cols=111 Identities=14% Similarity=0.054 Sum_probs=76.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHH
Q 040440 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVM 270 (355)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~ 270 (355)
......|+.+.|...+++++.+.....-.- +. ...........+++. ...+...++..+..
T Consensus 123 ~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~-----~~--~~~w~~~~r~~l~~~------------~~~a~~~~~~~~l~ 183 (388)
T 2ff4_A 123 VHAAAAGRFEQASRHLSAALREWRGPVLDD-----LR--DFQFVEPFATALVED------------KVLAHTAKAEAEIA 183 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTGG-----GT--TSTTHHHHHHHHHHH------------HHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhcCCCCCCC-----CC--chhHHHHHHHHHHHH------------HHHHHHHHHHHHHH
Confidence 334456899999999999998864321100 00 000000000011111 12234456778889
Q ss_pred ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 271 ESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 271 ~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
.|++++|+..++.++..+|-+...|..+..++...|+..+|+..|+++.+
T Consensus 184 ~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 184 CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998754
No 249
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.29 E-value=0.12 Score=38.40 Aligned_cols=119 Identities=14% Similarity=0.017 Sum_probs=81.8
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccC
Q 040440 194 SYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESK 273 (355)
Q Consensus 194 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 273 (355)
.+-.+|+.++-+-.-. .|..++....++..+.-.|+ |.+++-++... +.....+.-+.||.+.++
T Consensus 13 ~kY~dYdt~~fLsa~L---~~~~~eY~lL~~I~LyyngE--------Y~R~Lf~L~~l----NT~Ts~YYk~LCy~klKd 77 (242)
T 3kae_A 13 IRYRDYETAIFLAACL---LPCKPEYRMLMSIVLYLNGE--------YTRALFHLHKL----NTCTSKYYESLCYKKKKD 77 (242)
T ss_dssp HHTTCHHHHHHHHHHH---C----CTHHHHHHHHHHTTC--------HHHHHHHHHTC----CBHHHHHHHHHHHHHTTC
T ss_pred hhcccccHHHHHHHHH---ccCChHHHhhhhhhhhhcch--------HhHHHHHHHhc----chHHHHHHHHHHHHHHHH
Confidence 3455666664332222 33444455566777777888 88888887653 334556667889999999
Q ss_pred HHHHHHHHHHHHH--h--C-------------CCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q 040440 274 HSEALRVYEELVK--E--E-------------PRDFR-PYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHP 327 (355)
Q Consensus 274 ~~~A~~~~~~~l~--~--~-------------~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 327 (355)
|.+|+..++..++ . + |.|.+ .+..+|.++.+.|+.+||+.++.......|--++
T Consensus 78 YkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 78 YKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp HHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence 9999999999983 2 2 22322 4667899999999999999999999888775433
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.91 E-value=0.66 Score=40.27 Aligned_cols=90 Identities=16% Similarity=0.154 Sum_probs=67.5
Q ss_pred HHccCHHHHHHHHHHHHHcCCCc--------h--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 040440 160 IKSQKLVEAVDVIDRLIELEPNE--------F--------------EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRV 217 (355)
Q Consensus 160 ~~~g~~~~A~~~~~~~~~~~~~~--------~--------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 217 (355)
...|+.+.|...+++++.+.... . .+...++..+...|++.+++..++.++..+|-+.
T Consensus 126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E 205 (388)
T 2ff4_A 126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYRE 205 (388)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 34567777777777777763211 0 1233456778889999999999999999999999
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 040440 218 EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 218 ~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
..+..+..++...|+ ..+|+..|++..+.+.+
T Consensus 206 ~~~~~lm~al~~~Gr-~~~Al~~y~~~r~~L~~ 237 (388)
T 2ff4_A 206 PLWTQLITAYYLSDR-QSDALGAYRRVKTTLAD 237 (388)
T ss_dssp HHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 999999999999999 56666666666665554
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.87 E-value=0.19 Score=50.39 Aligned_cols=173 Identities=12% Similarity=-0.076 Sum_probs=108.4
Q ss_pred HHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc---C--------------------CCchHHHHHHHHHHHHcC
Q 040440 141 HLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL---E--------------------PNEFEWQLLKAQVQSYAG 197 (355)
Q Consensus 141 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~--------------------~~~~~~~~~la~~~~~~g 197 (355)
.+...|.++...+.+|.++...|++++|..+|+++... + ......|..+..++.+.|
T Consensus 834 l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~ 913 (1139)
T 4fhn_B 834 LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEES 913 (1139)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTS
T ss_pred HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcC
Confidence 44556778888899999999999999999999886321 0 011234667778888999
Q ss_pred CHHHHHHHHHHHHhhCC-CCHH----HHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHcc
Q 040440 198 ESEAAIKGFEEILRKDP-LRVE----AYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMES 272 (355)
Q Consensus 198 ~~~~A~~~~~~~~~~~p-~~~~----~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g 272 (355)
.++.+++..+.+++..+ ++.. .|..+-..+...|+ |++|...+............+..+....+..|
T Consensus 914 ~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~--------ye~Ay~aL~~~pd~~~r~~cLr~LV~~lce~~ 985 (1139)
T 4fhn_B 914 AYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGK--------FDAAHVALMVLSTTPLKKSCLLDFVNQLTKQG 985 (1139)
T ss_dssp CCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCC--------SGGGGHHHHHHHHSSSCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCC--------HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCC
Confidence 99999999999998754 3332 46666777777787 77777776654433344455555544444444
Q ss_pred CH------------HHHHHHHHHHH-Hh-CCCC-hHHHHHHHHHHHHcCCHHHHH-HHHHHHHHh
Q 040440 273 KH------------SEALRVYEELV-KE-EPRD-FRPYLCQGIIYTLLRKKDEAE-KQFEKFRRL 321 (355)
Q Consensus 273 ~~------------~~A~~~~~~~l-~~-~~~~-~~~~~~l~~~~~~~g~~~~A~-~~~~~~l~~ 321 (355)
.. ++-.+++..-. .. ++.+ +..|..|-..+...|++..|. -.|+.+.++
T Consensus 986 ~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 986 KINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp CHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence 43 33333332211 11 2222 334444555666777776554 456666554
No 252
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.83 E-value=0.021 Score=50.94 Aligned_cols=69 Identities=16% Similarity=0.080 Sum_probs=57.6
Q ss_pred CchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 255 SDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD-------FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 255 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
.....++..+-+.|...+.|++|..+..+.. .|.. ...++.+|.++...++|.+|.+++..++...|.+
T Consensus 228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 228 ETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred chhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 3445668888999999999999999999984 4432 3457788999999999999999999999988765
No 253
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.71 E-value=0.098 Score=46.90 Aligned_cols=78 Identities=15% Similarity=0.005 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYD 228 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 228 (355)
.+..+|++....+.++.|..+|.++..+.|++...+..+|.+....|+.-+|+-+|-+++......+.+..++...+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 566788888888999999999999999999999999999999999999999999999999877667777777766654
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.50 E-value=0.4 Score=48.06 Aligned_cols=140 Identities=15% Similarity=-0.009 Sum_probs=73.8
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhccCc
Q 040440 154 TLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKD-PLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 154 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 232 (355)
.+...+...|.++-+.++ ....+.++...+.+|.++...|++++|..+|+++-.-. .++.. ...
T Consensus 817 ~l~~~l~~~~~~~~~~~l----~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l-----------~~~ 881 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQL----IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQ-----------FAV 881 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHH----HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCS-----------CSS
T ss_pred HHHHHHHHhhhHHHHHHH----hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchh-----------hhh
Confidence 344455666666665543 23356666667788888888888888888887764321 10000 000
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-h----HHHHHHHHHHHHcCC
Q 040440 233 KLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD-F----RPYLCQGIIYTLLRK 307 (355)
Q Consensus 233 ~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-~----~~~~~l~~~~~~~g~ 307 (355)
..+................+|..+..++.+.|.++.+++..+.+++..+.+ . ..|..+-..+...|+
T Consensus 882 --------~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ 953 (1139)
T 4fhn_B 882 --------LREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGK 953 (1139)
T ss_dssp --------HHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCC
T ss_pred --------hcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCC
Confidence 000000011111112223445555666666666677776666666654322 1 145556666666677
Q ss_pred HHHHHHHHH
Q 040440 308 KDEAEKQFE 316 (355)
Q Consensus 308 ~~~A~~~~~ 316 (355)
|++|...+.
T Consensus 954 ye~Ay~aL~ 962 (1139)
T 4fhn_B 954 FDAAHVALM 962 (1139)
T ss_dssp SGGGGHHHH
T ss_pred HHHHHHHHH
Confidence 776655553
No 255
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.26 E-value=0.15 Score=45.78 Aligned_cols=69 Identities=12% Similarity=0.029 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 260 FKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 260 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
.+..+|++......++.|..+|.++....|++...++.+|.+....|+.-+|.-+|-+++......+..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a 222 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAA 222 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhH
Confidence 567789999999999999999999999999999999999999999999999999999988754334333
No 256
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=95.18 E-value=1.2 Score=37.20 Aligned_cols=155 Identities=13% Similarity=0.012 Sum_probs=93.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHH
Q 040440 153 QTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRK-----DPLRVEAYHGLVMAY 227 (355)
Q Consensus 153 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~l~~~~ 227 (355)
..+..=|.+.++|++|++++.... ..+.+.|++..|.++..-+++. .+-+.+....+..++
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~ga--------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQGA--------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH--------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHH--------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344555677888888888876543 2334445555444433222222 223444444555555
Q ss_pred hccCchHHHHHHHHHHHHHHHHhh-ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHH---------------HHh----
Q 040440 228 DGSDKKLNEVEKRIEKAMERCKKE-KKKSDLRDFKLLIAQIKVMESKHSEALRVYEEL---------------VKE---- 287 (355)
Q Consensus 228 ~~~~~~~~~a~~~~~~Al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~---------------l~~---- 287 (355)
.........-....++|+....+. .....++.++..+|..|.+.|++.+|..+|-.. .+.
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 443322222345577888888774 335678899999999999999999999987411 111
Q ss_pred CCCChHHHHHHH-HHHHHcCCHHHHHHHHHHHHHh
Q 040440 288 EPRDFRPYLCQG-IIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 288 ~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
.|.....+...+ ..|...|+...|...|+...+.
T Consensus 183 ~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 183 EDSTVAEFFSRLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 122234444443 4566789999999988877643
No 257
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=95.16 E-value=1.2 Score=37.37 Aligned_cols=154 Identities=12% Similarity=0.114 Sum_probs=92.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHH
Q 040440 153 QTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRK-----DPLRVEAYHGLVMAY 227 (355)
Q Consensus 153 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~l~~~~ 227 (355)
..++.=|.+.++|++|++++-... ..+.+.|++..|.++..-+++. .+-+.+....+..++
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~GA--------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILASVS--------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH--------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHH--------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 345556778899999988766543 2333444444444433222221 122334444455555
Q ss_pred hccCchHHHHHHHHHHHHHHHHhh-ccCCchHHHHHHHHHHHHHccCHHHHHHHHHH-------HH--------H-hCCC
Q 040440 228 DGSDKKLNEVEKRIEKAMERCKKE-KKKSDLRDFKLLIAQIKVMESKHSEALRVYEE-------LV--------K-EEPR 290 (355)
Q Consensus 228 ~~~~~~~~~a~~~~~~Al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-------~l--------~-~~~~ 290 (355)
.........-....++|+.+..+. .....++.++..+|..|.+.+++.+|...|-- .+ . ..|.
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc
Confidence 444332223345678888888773 34567889999999999999999999888721 11 1 1223
Q ss_pred ChHHHHHHH-HHHHHcCCHHHHHHHHHHHHH
Q 040440 291 DFRPYLCQG-IIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 291 ~~~~~~~l~-~~~~~~g~~~~A~~~~~~~l~ 320 (355)
....+...+ ..|...|+...|...++...+
T Consensus 185 e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 TAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344444443 456788999999887766554
No 258
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.55 E-value=2.9 Score=38.68 Aligned_cols=123 Identities=10% Similarity=0.006 Sum_probs=71.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH----HHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHH
Q 040440 190 AQVQSYAGESEAAIKGFEEILRKDPLRVEAY----HGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIA 265 (355)
Q Consensus 190 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la 265 (355)
+.......+.+.|...+........-+.... ..++.-....+. . .++...+........+......++
T Consensus 221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~e~~~ 292 (618)
T 1qsa_A 221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDV-T-------DEQAKWRDDAIMRSQSTSLIERRV 292 (618)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTC-C-------HHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCC-C-------hHHHHHHHhccccCCChHHHHHHH
Confidence 3333444577888888877765443333222 222222233331 1 222222222111122222233334
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 266 QIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 266 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
...+..|+++.|...|+.+-..........+.+|..+...|+.++|..+|+++..
T Consensus 293 r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 293 RMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4455679999999999876543334567789999999999999999999998865
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.54 E-value=0.11 Score=45.79 Aligned_cols=101 Identities=9% Similarity=0.036 Sum_probs=71.4
Q ss_pred cccchhhhhhhhhhhccCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCchH--
Q 040440 112 VESTNESTKDTTSAREDVSYEEKEKEIEQHLAAN---PNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELE--PNEFE-- 184 (355)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~-- 184 (355)
+..+...++.. .+..+++++|.+.|.++.... ....+.+.....++...++|..+..+++++.... ..+..
T Consensus 130 ~~~~~~~la~~--~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~ 207 (429)
T 4b4t_R 130 QAQAWINLGEY--YAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERR 207 (429)
T ss_dssp CSSCCHHHHHH--HHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred HHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHH
Confidence 33344455554 234449999999999988743 2346788888899999999999999999986552 22222
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 040440 185 --WQLLKAQVQSYAGESEAAIKGFEEILRKDP 214 (355)
Q Consensus 185 --~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 214 (355)
.....|.++...++|.+|-..|-+++....
T Consensus 208 ~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 208 NRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 334456677788999999999988876543
No 260
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.33 E-value=0.062 Score=47.95 Aligned_cols=126 Identities=12% Similarity=0.121 Sum_probs=56.1
Q ss_pred HHHHccCHHHHHHHHHHHHH--c---------CCCchHHHHHHHHHHHHcCCHHHHH----------HHHHHHHhh----
Q 040440 158 VRIKSQKLVEAVDVIDRLIE--L---------EPNEFEWQLLKAQVQSYAGESEAAI----------KGFEEILRK---- 212 (355)
Q Consensus 158 ~~~~~g~~~~A~~~~~~~~~--~---------~~~~~~~~~~la~~~~~~g~~~~A~----------~~~~~~~~~---- 212 (355)
.++..+++++|.++-...+. . +.-....|+.++.++...|+..+.. ..+-.+++.
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 44577889988888776651 1 2223346777777777777665532 222233322
Q ss_pred -CCC-CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhcc------CCchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 040440 213 -DPL-RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKK------KSDLRDFKLLIAQIKVMESKHSEALRVYEEL 284 (355)
Q Consensus 213 -~p~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 284 (355)
+.. ....+..+.+.|...+. |+.|..+..+..- +.....+++.+|.++..+++|.+|.+++..+
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~--------y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGE--------VDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSC--------STTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCcchhHHHHHHHHHHHHccCc--------HHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 222 24557788888998888 8888888877321 1123556888999999999999999999999
Q ss_pred HHhCCCC
Q 040440 285 VKEEPRD 291 (355)
Q Consensus 285 l~~~~~~ 291 (355)
+...|.+
T Consensus 297 ~rkap~~ 303 (523)
T 4b4t_S 297 IRKAPHN 303 (523)
T ss_dssp TSSCSCS
T ss_pred HHhCCcc
Confidence 9887754
No 261
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.01 E-value=7.8 Score=34.18 Aligned_cols=155 Identities=13% Similarity=0.001 Sum_probs=97.8
Q ss_pred ccCHHHHHHHHHHHHHc------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHH
Q 040440 162 SQKLVEAVDVIDRLIEL------EPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLN 235 (355)
Q Consensus 162 ~g~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 235 (355)
.|++++|++.+....+. .+....+...+..++...|+++...+.+.-..+.......+...+....... .+
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~---l~ 105 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEY---LK 105 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHH---HH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH---Hh
Confidence 36788888877544332 1233456777888999999999988887766665555444443333322210 00
Q ss_pred HHH-HHHHHHHHHHHhh---ccCC-----chHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-C-C----ChHHHHHHHH
Q 040440 236 EVE-KRIEKAMERCKKE---KKKS-----DLRDFKLLIAQIKVMESKHSEALRVYEELVKEE-P-R----DFRPYLCQGI 300 (355)
Q Consensus 236 ~a~-~~~~~Al~~~~~~---~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~-~----~~~~~~~l~~ 300 (355)
..- ...+.-+...+.. .... ....+...|+.+|...|++.+|..++....... . . -.+.+.....
T Consensus 106 ~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 106 SSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp HHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred cCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 000 0011122222221 1111 134567789999999999999999999986421 1 1 1467788899
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 040440 301 IYTLLRKKDEAEKQFEKFR 319 (355)
Q Consensus 301 ~~~~~g~~~~A~~~~~~~l 319 (355)
+|...+++.+|...++++.
T Consensus 186 l~l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 9999999999999999874
No 262
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=89.85 E-value=12 Score=34.55 Aligned_cols=183 Identities=8% Similarity=-0.087 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHHHHcCCCCHHH----HHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEA----LQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~----~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+.+.|...+........-+... +..++......+...++...+.+......++.... .++....+.|+++.|...
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~~r~Alr~~d~~~a~~~ 307 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIE-RRVRMALGTGDRRGLNTW 307 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHH-HHHHHHHHHTCHHHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHH-HHHHHHHHCCCHHHHHHH
Confidence 6677777776665433222221 22222222333435566666666554433332222 223334456788888777
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHH--------HHHhhccC---------C-ch----HHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAME--------RCKKEKKK---------S-DL----RDFKLL 263 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~--------~~~~~~~~---------~-~~----~~~~~~ 263 (355)
|+.+-..........+.+|..+...|+ .+++...|.++.. ..+++... + .. ..-...
T Consensus 308 ~~~l~~~~~~~~r~~YW~~ra~~~~g~-~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (618)
T 1qsa_A 308 LARLPMEAKEKDEWRYWQADLLLERGR-EAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMA 386 (618)
T ss_dssp HHHSCTTGGGSHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHH
T ss_pred HHHccccccccHhHHHHHHHHHHHcCC-HHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHHH
Confidence 766555333456667777777777776 4444444444332 00111100 0 00 011234
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 040440 264 IAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFE 316 (355)
Q Consensus 264 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 316 (355)
.+..+...|....|...+..++... +..-...++.+....|.+..++....
T Consensus 387 r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 387 RVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 5667778899999998888877542 34455677788888888887775544
No 263
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.33 E-value=8.3 Score=37.43 Aligned_cols=150 Identities=13% Similarity=0.064 Sum_probs=79.5
Q ss_pred HHHccCHHHHHHHHHHHHHcC-CCch----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---C---CH----HHHHHH
Q 040440 159 RIKSQKLVEAVDVIDRLIELE-PNEF----EWQLLKAQVQSYAGESEAAIKGFEEILRKDP---L---RV----EAYHGL 223 (355)
Q Consensus 159 ~~~~g~~~~A~~~~~~~~~~~-~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p---~---~~----~~~~~l 223 (355)
.+..|+.++++..+.+.+... .++. .+.+.+|.++...+ ++++.++...+.... . +. .+...+
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 445678888888887766421 1221 24555665554444 578888887776432 0 11 245577
Q ss_pred HHHHhccCchHHHHHHHHHHHHHHHHh-hccCCch--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 040440 224 VMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDL--RDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGI 300 (355)
Q Consensus 224 ~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 300 (355)
|.++...++ +++++.+.. +..+... ...-+.+|.++...|+-+.....+..+.+...++..-...+|.
T Consensus 462 Gla~~GS~~---------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgL 532 (963)
T 4ady_A 462 GLAAMGSAN---------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGL 532 (963)
T ss_dssp HHHSTTCCC---------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHhcCCCC---------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 777777665 344444444 1111111 1335566777777777666555555555433222222233444
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 040440 301 IYTLLRKKDEAEKQFEKFR 319 (355)
Q Consensus 301 ~~~~~g~~~~A~~~~~~~l 319 (355)
.+...|+.+.+....+...
T Consensus 533 Gll~~g~~e~~~~li~~L~ 551 (963)
T 4ady_A 533 ALINYGRQELADDLITKML 551 (963)
T ss_dssp HHHTTTCGGGGHHHHHHHH
T ss_pred HhhhCCChHHHHHHHHHHH
Confidence 4445666655555555443
No 264
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=87.53 E-value=6.2 Score=28.30 Aligned_cols=57 Identities=11% Similarity=0.074 Sum_probs=48.0
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 266 QIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 266 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
.....+|+-++-.+++...+...+-++.....+|.+|.+.|+..+|.+.+.++-+..
T Consensus 99 d~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 99 DILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 345678999999999988777777789999999999999999999999999998754
No 265
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=87.43 E-value=8.3 Score=29.63 Aligned_cols=48 Identities=10% Similarity=-0.115 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 274 HSEALRVYEELVKEEP--RDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 274 ~~~A~~~~~~~l~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
..++..+|.-+....- .....|...|..+...|++.+|.++|+..++.
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4444444444443322 23344444455555555555555555555543
No 266
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=83.98 E-value=11 Score=37.07 Aligned_cols=27 Identities=19% Similarity=0.044 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Q 040440 260 FKLLIAQIKVMESKHSEALRVYEELVK 286 (355)
Q Consensus 260 ~~~~la~~~~~~g~~~~A~~~~~~~l~ 286 (355)
+|..++.++...+-++-+++..+.+++
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 344444444555555555555555554
No 267
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=83.98 E-value=10 Score=27.62 Aligned_cols=81 Identities=12% Similarity=0.085 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhhc---cCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHH
Q 040440 238 EKRIEKAMERCKKEK---KKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEE--PRDFRPYLCQGIIYTLLRKKDEAE 312 (355)
Q Consensus 238 ~~~~~~Al~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 312 (355)
...+++++..+.... +++....+|..++.. .+++..+|.-+.... -.....|...|..+...|++.+|.
T Consensus 48 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~------~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~ 121 (152)
T 4a1g_A 48 ITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEY------NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHAS 121 (152)
T ss_dssp HHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTT------BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHh------cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 344777777776633 333334445555433 234788888877644 345677888999999999999999
Q ss_pred HHHHHHHHhCCC
Q 040440 313 KQFEKFRRLVPR 324 (355)
Q Consensus 313 ~~~~~~l~~~p~ 324 (355)
++|+..++....
T Consensus 122 ~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 122 AVLQRGIQNQAE 133 (152)
T ss_dssp HHHHHHHHTTCB
T ss_pred HHHHHHHHcCCc
Confidence 999999987643
No 268
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=82.45 E-value=19 Score=34.96 Aligned_cols=101 Identities=14% Similarity=0.060 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDI--EALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFE 207 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 207 (355)
.-+++.+.+..++..+.... .+-..+|.++.-.|+-+....++..+.+...++......+|..+...|+.+.+..+.+
T Consensus 469 ~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~ 548 (963)
T 4ady_A 469 ANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLIT 548 (963)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHH
T ss_pred CCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHH
Confidence 33566777777776443211 3445677777788887776666666665433332223344455556788877766666
Q ss_pred HHHhhCCCCHHHH----HHHHHHHhccCc
Q 040440 208 EILRKDPLRVEAY----HGLVMAYDGSDK 232 (355)
Q Consensus 208 ~~~~~~p~~~~~~----~~l~~~~~~~~~ 232 (355)
.+... .++... +.+|..|...|+
T Consensus 549 ~L~~~--~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 549 KMLAS--DESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HHHHC--SCHHHHHHHHHHHHHHTTTSCC
T ss_pred HHHhC--CCHHHHHHHHHHHHHHhcCCCC
Confidence 55542 233332 355667778887
No 269
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=82.13 E-value=3.6 Score=32.18 Aligned_cols=79 Identities=9% Similarity=0.089 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhhc---cCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCCHHHHHHH
Q 040440 240 RIEKAMERCKKEK---KKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP--RDFRPYLCQGIIYTLLRKKDEAEKQ 314 (355)
Q Consensus 240 ~~~~Al~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 314 (355)
.+++++..|.... +++....+|..++.. .+++..+|..+....- .....|...|..+...|++.+|..+
T Consensus 99 lLErc~~~F~~~~rYknD~RyLklWl~Ya~~------~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~V 172 (223)
T 4aez_C 99 LLERCTREFVRNPLYKDDVRYLRIWMQYVNY------IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEV 172 (223)
T ss_dssp HHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT------CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcccccccCCHHHHHHHHHHHHc------cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3666666666533 333334445555542 2466677777776543 4567788889999999999999999
Q ss_pred HHHHHHhCCC
Q 040440 315 FEKFRRLVPR 324 (355)
Q Consensus 315 ~~~~l~~~p~ 324 (355)
|+..++..-.
T Consensus 173 y~~Gi~~~A~ 182 (223)
T 4aez_C 173 YQKGKRMKAK 182 (223)
T ss_dssp HHHHHHHTCB
T ss_pred HHHHHHcCCc
Confidence 9999987643
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=81.66 E-value=16 Score=28.08 Aligned_cols=121 Identities=9% Similarity=-0.066 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHHHHc---CCCch-HHHHHHH----HHHHHcCCH-H-HHH-HHHHHHHhhCCCCHHH-----HHHHHHHH
Q 040440 164 KLVEAVDVIDRLIEL---EPNEF-EWQLLKA----QVQSYAGES-E-AAI-KGFEEILRKDPLRVEA-----YHGLVMAY 227 (355)
Q Consensus 164 ~~~~A~~~~~~~~~~---~~~~~-~~~~~la----~~~~~~g~~-~-~A~-~~~~~~~~~~p~~~~~-----~~~l~~~~ 227 (355)
+..+-...|++.+.. ..+++ +.|.... ..|-..|.. + .-. .++++++....++... +..+=..|
T Consensus 7 ~l~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Y 86 (202)
T 3esl_A 7 QLNQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWY 86 (202)
T ss_dssp HHHHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHH
Confidence 345566677777665 33343 2333332 222222321 1 233 6788888765544322 32322223
Q ss_pred hccCchHHHHHHHHHHHHHHHHh---hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 040440 228 DGSDKKLNEVEKRIEKAMERCKK---EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP 289 (355)
Q Consensus 228 ~~~~~~~~~a~~~~~~Al~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 289 (355)
...-. .+......++|.- .........+|...|..+...|++++|.++|+..++..-
T Consensus 87 a~~~~-----~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 87 INLFL-----SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp HHHHS-----TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHhhc-----ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 22200 0001245555554 455667788899999999999999999999999999754
No 271
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=81.32 E-value=10 Score=27.19 Aligned_cols=52 Identities=12% Similarity=0.112 Sum_probs=26.6
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHH
Q 040440 192 VQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKA 244 (355)
Q Consensus 192 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A 244 (355)
....+|+-++-.+.+...+...+-+++....++.+|.+.|+ ..++.....+|
T Consensus 100 ~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~-~r~a~eLl~~A 151 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGD-ERDATTLLIEA 151 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred HHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcc-hhhHHHHHHHH
Confidence 34455555555555555444444455556666666666555 44444444444
No 272
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=81.00 E-value=13 Score=36.36 Aligned_cols=81 Identities=12% Similarity=-0.105 Sum_probs=59.9
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc-CC--------------------C--chHHHHHHHHHHH
Q 040440 138 IEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL-EP--------------------N--EFEWQLLKAQVQS 194 (355)
Q Consensus 138 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~--------------------~--~~~~~~~la~~~~ 194 (355)
..+.+..-|.++..-+.+|.+|...|++++|..+|+++-.- .. + ....|.....++.
T Consensus 829 a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE 908 (950)
T 4gq2_M 829 CMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLF 908 (950)
T ss_dssp HHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHH
Confidence 34456677788888899999999999999999999986421 00 0 1124667778888
Q ss_pred HcCCHHHHHHHHHHHHhhC-CCCHH
Q 040440 195 YAGESEAAIKGFEEILRKD-PLRVE 218 (355)
Q Consensus 195 ~~g~~~~A~~~~~~~~~~~-p~~~~ 218 (355)
..+-++-+++..+.+++.- +++..
T Consensus 909 ~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 909 EESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp HTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred hcCCHHHHHHHHHHHHhhcccCCcc
Confidence 8899999999999998753 44443
No 273
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=80.79 E-value=15 Score=27.20 Aligned_cols=79 Identities=18% Similarity=0.195 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhhc---cCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHH
Q 040440 239 KRIEKAMERCKKEK---KKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEE--PRDFRPYLCQGIIYTLLRKKDEAEK 313 (355)
Q Consensus 239 ~~~~~Al~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 313 (355)
..+++++..+.... +++....+|..++.. .+ .+..+|..+.... -.....|...|..+...|++.+|.+
T Consensus 44 ~lLErc~~~f~~~~~YknD~RyLklWl~ya~~---~~---~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~ 117 (164)
T 2wvi_A 44 TLLERAVEALQGEKRYYSDPRFLNLWLKLGRL---CN---EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADA 117 (164)
T ss_dssp HHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHH---CS---CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhhhhhhhccCHHHHHHHHHHHHh---cC---CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 34677777776633 333444445555544 23 4667777776644 3456778889999999999999999
Q ss_pred HHHHHHHhCC
Q 040440 314 QFEKFRRLVP 323 (355)
Q Consensus 314 ~~~~~l~~~p 323 (355)
+|+.+++...
T Consensus 118 Iy~~Gi~~~A 127 (164)
T 2wvi_A 118 IFQEGIQQKA 127 (164)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHcCC
Confidence 9999998764
No 274
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=79.64 E-value=5.4 Score=35.20 Aligned_cols=65 Identities=11% Similarity=0.031 Sum_probs=51.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC--C--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC
Q 040440 261 KLLIAQIKVMESKHSEALRVYEELVKEEP--R--------DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL-VPRN 325 (355)
Q Consensus 261 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~p~~ 325 (355)
...+-.+|++.|+..-+..+++..-.... . -....+.+|.++...++|.+|.+.+..|+.. .|.+
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 34456889999999999999876644322 1 1356789999999999999999999999998 7755
No 275
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=77.67 E-value=7.5 Score=24.26 Aligned_cols=29 Identities=3% Similarity=-0.079 Sum_probs=19.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 297 CQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 297 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
.+|..+...|++++|..+|-+++...|+-
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 45666666666666666666666666654
No 276
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=76.78 E-value=25 Score=27.50 Aligned_cols=49 Identities=10% Similarity=-0.060 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 040440 241 IEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP 289 (355)
Q Consensus 241 ~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 289 (355)
..+....+...........+|...|..+...|++.+|.++|+..++..-
T Consensus 133 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 181 (223)
T 4aez_C 133 PVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKA 181 (223)
T ss_dssp HHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 3444444444555667788899999999999999999999999998754
No 277
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=76.04 E-value=8.4 Score=29.77 Aligned_cols=36 Identities=11% Similarity=0.104 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh
Q 040440 257 LRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDF 292 (355)
Q Consensus 257 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 292 (355)
...+.+.+|.++...++|.+|.+.+.+++...|.+.
T Consensus 13 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 13 RVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 356688899999999999999999999999888654
No 278
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=73.32 E-value=12 Score=23.36 Aligned_cols=30 Identities=17% Similarity=0.099 Sum_probs=19.3
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHcCCCch
Q 040440 154 TLMEVRIKSQKLVEAVDVIDRLIELEPNEF 183 (355)
Q Consensus 154 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 183 (355)
.+|+.+...|++++|..+|-+++...|.-.
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~ 51 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 51 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 466666666666666666666666665543
No 279
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=70.45 E-value=18 Score=23.13 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=12.0
Q ss_pred HHccCHHHHHHHHHHHHH
Q 040440 160 IKSQKLVEAVDVIDRLIE 177 (355)
Q Consensus 160 ~~~g~~~~A~~~~~~~~~ 177 (355)
-..|++++|+.+|.++++
T Consensus 22 D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 466777777777766654
No 280
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=69.85 E-value=14 Score=23.75 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=11.3
Q ss_pred HHccCHHHHHHHHHHHHH
Q 040440 269 VMESKHSEALRVYEELVK 286 (355)
Q Consensus 269 ~~~g~~~~A~~~~~~~l~ 286 (355)
-+.|++++|+.+|.++++
T Consensus 30 D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 445677777666666554
No 281
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=69.39 E-value=50 Score=27.96 Aligned_cols=45 Identities=9% Similarity=-0.065 Sum_probs=33.5
Q ss_pred HHHHHHHHHHc-----CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 040440 168 AVDVIDRLIEL-----EPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRK 212 (355)
Q Consensus 168 A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 212 (355)
++.+|.+++.. ......-|..+|..+++.+++.+|+..+-++-..
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 66677777654 3344556778888999999999999998877654
No 282
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=68.04 E-value=33 Score=25.22 Aligned_cols=59 Identities=12% Similarity=-0.075 Sum_probs=42.0
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHcCCCc--h-HH-----H-HHHHHHHHHcCCHHHHHHHHHHHHhh
Q 040440 154 TLMEVRIKSQKLVEAVDVIDRLIELEPNE--F-EW-----Q-LLKAQVQSYAGESEAAIKGFEEILRK 212 (355)
Q Consensus 154 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~-~~-----~-~~la~~~~~~g~~~~A~~~~~~~~~~ 212 (355)
..+..++..|+|=+|-++++.+....+.. . .. . ...|....+.|+...|...+.+++..
T Consensus 37 ~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 37 VHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34556677799999999999988765443 1 22 2 22334566789999999999999874
No 283
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=67.48 E-value=17 Score=27.98 Aligned_cols=52 Identities=8% Similarity=-0.033 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHH-----HHHHHHHHHHcCCHH
Q 040440 149 IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEW-----QLLKAQVQSYAGESE 200 (355)
Q Consensus 149 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~la~~~~~~g~~~ 200 (355)
+...+.+|.++...++|.+|.+.+..++...|..... +..+.-+-.-.|++.
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4567889999999999999999999999987765432 222333334556654
No 284
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=67.42 E-value=35 Score=25.14 Aligned_cols=60 Identities=8% Similarity=-0.025 Sum_probs=44.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCC---hHHH------HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 262 LLIAQIKVMESKHSEALRVYEELVKEEPRD---FRPY------LCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 262 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~------~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
+..+..++..|+|=+|-++++.+....+.. ...| ...|....+.|+..-|...+.+++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344666777899999999999998876544 2222 23344556789999999999999873
No 285
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=66.05 E-value=20 Score=31.59 Aligned_cols=87 Identities=8% Similarity=0.081 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHHcCCC--C----------H----HHHHHHHHHHHHccCHHHHHHHHHHHHHcCC--C--------ch
Q 040440 130 SYEEKEKEIEQHLAANPN--D----------I----EALQTLMEVRIKSQKLVEAVDVIDRLIELEP--N--------EF 183 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~--~----------~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~--------~~ 183 (355)
..+++...+.+++...-. + - .....+-.+|++.|+..-+..+++.+-.... . ..
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v 220 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQI 220 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceE
Confidence 667788888888764111 1 1 1233456789999999999999876544322 1 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC
Q 040440 184 EWQLLKAQVQSYAGESEAAIKGFEEILRK-DPLR 216 (355)
Q Consensus 184 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~ 216 (355)
..++.+|.++...++|.+|.+.+..|+.. .|..
T Consensus 221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 221 EYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred eeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 36888999999999999999999999998 6644
No 286
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=64.53 E-value=29 Score=23.24 Aligned_cols=72 Identities=13% Similarity=-0.030 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 241 IEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEK 317 (355)
Q Consensus 241 ~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 317 (355)
.++|..+.+-+...+....+.......+..+|+|++|....+..- .++.--.++.+..+.|..+++...+.+
T Consensus 23 HqEA~tIAdwL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 23 HEEANCIAEWLHLKGEEEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCEYRLGLGSALESRLNR 94 (116)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHHHHHHHHHH
Confidence 555555554433344444445555667789999999998876532 445555566777788988888877643
No 287
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=64.44 E-value=29 Score=23.21 Aligned_cols=73 Identities=10% Similarity=-0.080 Sum_probs=47.7
Q ss_pred HHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 241 IEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKF 318 (355)
Q Consensus 241 ~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 318 (355)
.++|..+.+-+...+....+.......+..+|+|++|....+..- .++.--.++.+..+.|..+++...+.+.
T Consensus 22 HqEA~tIAdwL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQDEAARLIRISSLANQGRYQEALAFAHGNP-----WPALEPWFALCEWHLGLGAALDRRLAGL 94 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 455555554433344444445555667788999999988775531 4555556677788999998888877443
No 288
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=63.56 E-value=15 Score=24.02 Aligned_cols=26 Identities=12% Similarity=0.074 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLI 176 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~ 176 (355)
.+-..++.+...|+|++||++.+++.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 34566777777888888877777654
No 289
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=63.20 E-value=8 Score=24.52 Aligned_cols=27 Identities=11% Similarity=0.234 Sum_probs=21.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh
Q 040440 261 KLLIAQIKVMESKHSEALRVYEELVKE 287 (355)
Q Consensus 261 ~~~la~~~~~~g~~~~A~~~~~~~l~~ 287 (355)
...+|+=|...|+|+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 345677778889999999999888763
No 290
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=63.06 E-value=20 Score=22.91 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=11.7
Q ss_pred HHccCHHHHHHHHHHHHH
Q 040440 269 VMESKHSEALRVYEELVK 286 (355)
Q Consensus 269 ~~~g~~~~A~~~~~~~l~ 286 (355)
-+.|+|++|+.+|.++++
T Consensus 22 D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 455777777777766654
No 291
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=62.26 E-value=14 Score=32.61 Aligned_cols=54 Identities=15% Similarity=0.294 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHh--hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 040440 234 LNEVEKRIEKAMERCKK--EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKE 287 (355)
Q Consensus 234 ~~~a~~~~~~Al~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 287 (355)
++.++..+++|+..+.. .........++..+|++|+..|+|++|....++++..
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 34445567777776643 1233455667888999999999999999999999863
No 292
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=61.63 E-value=79 Score=27.38 Aligned_cols=59 Identities=8% Similarity=0.043 Sum_probs=38.2
Q ss_pred HHHHHHHHHHc-----CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHH
Q 040440 168 AVDVIDRLIEL-----EPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRK------DPLRVEAYHGLVMA 226 (355)
Q Consensus 168 A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~ 226 (355)
++.+|.+++.. ...+..-|..+|..+++.+++.+|+..+-++-.. ..++.+.|..+..+
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eI 367 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEV 367 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHH
Confidence 55566666543 2334455777888899999999999998877654 23455555544433
No 293
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=60.95 E-value=18 Score=23.61 Aligned_cols=24 Identities=17% Similarity=0.045 Sum_probs=14.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHH
Q 040440 261 KLLIAQIKVMESKHSEALRVYEEL 284 (355)
Q Consensus 261 ~~~la~~~~~~g~~~~A~~~~~~~ 284 (355)
+...+..+.+.|+|++|+++.+++
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHH
Confidence 444555566666666666666554
No 294
>3qtm_A Uncharacterized protein C4B3.07; tetratricopeptide repeat, enhancer of translation terminatio translation; HET: CME; 2.15A {Schizosaccharomyces pombe} PDB: 3qtn_B
Probab=60.67 E-value=64 Score=25.94 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 040440 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIK 161 (355)
Q Consensus 131 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 161 (355)
++.|++-++-.++..|++......++.+.++
T Consensus 101 FDaALERielGLe~~p~s~~L~la~SKILlq 131 (346)
T 3qtm_A 101 IDAAIERAQLGLDAPGNESRLFLALARAYLE 131 (346)
T ss_dssp HHHHHHHHHHGGGSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhCCCChhHHHHHHHHHHH
Confidence 5778888888888999999888888777664
No 295
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.62 E-value=81 Score=27.09 Aligned_cols=58 Identities=12% Similarity=0.047 Sum_probs=38.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHcC-----------------CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 040440 155 LMEVRIKSQKLVEAVDVIDRLIELE-----------------PNEFEWQLLKAQVQSYAGESEAAIKGFEEILRK 212 (355)
Q Consensus 155 la~~~~~~g~~~~A~~~~~~~~~~~-----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 212 (355)
+..+.....+.++|++.+++..... .....+...++..|...|+.++|...++++-..
T Consensus 82 ~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~ 156 (393)
T 4b4t_O 82 LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKT 156 (393)
T ss_dssp THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3445567778888988888764321 001234556778888888888888888877653
No 296
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=60.51 E-value=15 Score=32.45 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHh--hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 040440 234 LNEVEKRIEKAMERCKK--EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKE 287 (355)
Q Consensus 234 ~~~a~~~~~~Al~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 287 (355)
++..+..+++|+..+.. .........++..+|++|+..|+|++|....++++..
T Consensus 170 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 170 YTEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 34445567778776643 1234455667888999999999999999999999863
No 297
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=58.34 E-value=32 Score=32.04 Aligned_cols=45 Identities=16% Similarity=0.073 Sum_probs=23.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccC
Q 040440 187 LLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSD 231 (355)
Q Consensus 187 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 231 (355)
...|...+..|+|.-|.++.+.++..+|++..+...++.+|.+.|
T Consensus 453 ~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 453 LEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555555555555555444
No 298
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=58.20 E-value=14 Score=24.43 Aligned_cols=28 Identities=0% Similarity=0.004 Sum_probs=15.7
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 040440 262 LLIAQIKVMESKHSEALRVYEELVKEEP 289 (355)
Q Consensus 262 ~~la~~~~~~g~~~~A~~~~~~~l~~~~ 289 (355)
..+|..+...|+++.|+..|-+++...|
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~ 51 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCG 51 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 3455555556666666665555555544
No 299
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=56.97 E-value=35 Score=21.79 Aligned_cols=19 Identities=26% Similarity=0.204 Sum_probs=12.4
Q ss_pred HHHccCHHHHHHHHHHHHH
Q 040440 159 RIKSQKLVEAVDVIDRLIE 177 (355)
Q Consensus 159 ~~~~g~~~~A~~~~~~~~~ 177 (355)
.-..|++++|+.+|.++++
T Consensus 29 ~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 29 ADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 3466777777777766654
No 300
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=56.82 E-value=59 Score=25.20 Aligned_cols=43 Identities=9% Similarity=0.015 Sum_probs=25.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 040440 265 AQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRK 307 (355)
Q Consensus 265 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~ 307 (355)
..++.+.|.|++|.+++++.+..++.+......|..+-.+...
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~ 163 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNL 163 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCT
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCc
Confidence 3455677777777777777776655444444555544444433
No 301
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=56.59 E-value=19 Score=23.81 Aligned_cols=30 Identities=17% Similarity=0.107 Sum_probs=22.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCCCc
Q 040440 153 QTLMEVRIKSQKLVEAVDVIDRLIELEPNE 182 (355)
Q Consensus 153 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 182 (355)
..+|..+...|+++.|+.+|-+++...|.-
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 357778888888888888887777766654
No 302
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=56.27 E-value=13 Score=23.48 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=21.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 040440 186 QLLKAQVQSYAGESEAAIKGFEEILRK 212 (355)
Q Consensus 186 ~~~la~~~~~~g~~~~A~~~~~~~~~~ 212 (355)
...+|+-|...|+|+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 456777788888888888888887764
No 303
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=55.82 E-value=66 Score=24.93 Aligned_cols=38 Identities=11% Similarity=0.206 Sum_probs=23.1
Q ss_pred HHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 040440 156 MEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQ 193 (355)
Q Consensus 156 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 193 (355)
..++++.|.|++|.+++++....++.+......|..+-
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II 158 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNII 158 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 34556777777777777777765554444444444443
No 304
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=53.20 E-value=27 Score=31.23 Aligned_cols=55 Identities=15% Similarity=0.173 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHhh-----ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 040440 234 LNEVEKRIEKAMERCKKE-----KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEE 288 (355)
Q Consensus 234 ~~~a~~~~~~Al~~~~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 288 (355)
++..+..+++|+..+... ........++..+|++|+..|+|++|....++++...
T Consensus 174 y~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~~ 233 (495)
T 3lew_A 174 YAQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAKD 233 (495)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 444556678888776331 1234555678889999999999999999999998753
No 305
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=53.10 E-value=16 Score=32.42 Aligned_cols=53 Identities=9% Similarity=0.186 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHh--hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 040440 235 NEVEKRIEKAMERCKK--EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKE 287 (355)
Q Consensus 235 ~~a~~~~~~Al~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 287 (355)
+..+..+++|+..+.. .........++..+|++|+..|+|++|....++++..
T Consensus 177 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 177 EQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 3445556777665543 1223455667888999999999999999999999874
No 306
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=52.98 E-value=36 Score=22.29 Aligned_cols=18 Identities=33% Similarity=0.396 Sum_probs=11.8
Q ss_pred HHccCHHHHHHHHHHHHH
Q 040440 269 VMESKHSEALRVYEELVK 286 (355)
Q Consensus 269 ~~~g~~~~A~~~~~~~l~ 286 (355)
-..|+|++|+.+|..+++
T Consensus 26 D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 26 DAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHH
Confidence 445777777777766654
No 307
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=52.81 E-value=88 Score=25.10 Aligned_cols=168 Identities=14% Similarity=0.115 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CC-chHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhC--CCCHHHHHHH
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRLIELE--PN-EFEWQLLKAQVQSY-AGESEAAIKGFEEILRKD--PLRVEAYHGL 223 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~-~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~--p~~~~~~~~l 223 (355)
+-+..++.+.-+.++|++.+.+.+++.+.+ ++ ..+-...+..+|-. .|....+...+...-+.. ..+ .....+
T Consensus 9 e~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRiissieqke~~k~~-~~~~~~ 87 (260)
T 1o9d_A 9 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGN-EEHVNS 87 (260)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-HHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhccCc-HHHHHH
Confidence 345567778888899999999999998876 43 23333344443322 233444444443332221 112 122222
Q ss_pred HHHHhccCchHHHHHHHHHHHHHHHHh--hcc--CCchHHH-HHHHHHHHHHc----------cCHHHHHHHHHHHHH--
Q 040440 224 VMAYDGSDKKLNEVEKRIEKAMERCKK--EKK--KSDLRDF-KLLIAQIKVME----------SKHSEALRVYEELVK-- 286 (355)
Q Consensus 224 ~~~~~~~~~~~~~a~~~~~~Al~~~~~--~~~--~~~~~~~-~~~la~~~~~~----------g~~~~A~~~~~~~l~-- 286 (355)
..-|... -..+.....++.+.++++ +.. .+....+ +-..|..|... .-.+.|...|+++..
T Consensus 88 i~~yr~k--ie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA 165 (260)
T 1o9d_A 88 IREYRSK--IENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIA 165 (260)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 2222211 122333445566666666 111 1112222 23345554322 223567788888774
Q ss_pred ---hCCCChH---HHHHHHHHHH-HcCCHHHHHHHHHHHHH
Q 040440 287 ---EEPRDFR---PYLCQGIIYT-LLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 287 ---~~~~~~~---~~~~l~~~~~-~~g~~~~A~~~~~~~l~ 320 (355)
+.|.++. ...+.+..|+ .+|+.++|...-++++.
T Consensus 166 ~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 206 (260)
T 1o9d_A 166 TTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (260)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4565552 2333444444 57999999888777664
No 308
>3msv_A Nuclear import adaptor, NRO1; helix repeats, heat repeats, protein binding; 2.18A {Schizosaccharomyces pombe}
Probab=51.99 E-value=97 Score=25.33 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 040440 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIK 161 (355)
Q Consensus 131 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 161 (355)
++.|++-++-.++..|++......++.++++
T Consensus 148 FDaALERielGLe~~p~s~~L~la~sKIllq 178 (393)
T 3msv_A 148 IDAAIERAQLGLDAPGNESRLFLALARAYLE 178 (393)
T ss_dssp HHHHHHHHHHHTTSCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhCCCChhHHHHHHHHHHH
Confidence 5777888888888899998888877777664
No 309
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=51.95 E-value=69 Score=23.62 Aligned_cols=49 Identities=10% Similarity=0.078 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 040440 241 IEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP 289 (355)
Q Consensus 241 ~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 289 (355)
..+....+...........+|...|.++...|++.+|.++|+..++...
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 3444444444556667788899999999999999999999999998754
No 310
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=51.81 E-value=26 Score=30.99 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHhh-------ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 040440 234 LNEVEKRIEKAMERCKKE-------KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKE 287 (355)
Q Consensus 234 ~~~a~~~~~~Al~~~~~~-------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 287 (355)
++..+..+++|+..+... ........++..+|++|+..|+|++|....++++..
T Consensus 160 y~~I~~DL~~A~~~L~~~~~~~~~~~gr~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 160 YQQIFDDLNLAQDYLTNYVRKGDGQKFKPNTDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCSGGGTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcccccCCccccCcccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 445566688888877431 123455667888999999999999999999999854
No 311
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=51.68 E-value=87 Score=24.68 Aligned_cols=168 Identities=14% Similarity=0.103 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCC--CCHHHHHHHHH
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE-FEWQLLKAQVQSY-AGESEAAIKGFEEILRKDP--LRVEAYHGLVM 225 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~ 225 (355)
+-+..++.+.-+.++|++.+.+.+++++.+++- .+-...+..+|-. .|....+...+....+... .+ +....+..
T Consensus 6 e~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayKnvig~rR~swRiissieqk~~~k~~-~~~~~~i~ 84 (234)
T 2br9_A 6 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGG-EDKLKMIR 84 (234)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCc-hHHHHHHH
Confidence 345567777888899999999999988876542 2333344443322 2333334444333222110 11 11112222
Q ss_pred HHhccCchHHHHHHHHHHHHHHHHh--hcc--CCchHHH-HHHHHHHHHHc----------cCHHHHHHHHHHHHH----
Q 040440 226 AYDGSDKKLNEVEKRIEKAMERCKK--EKK--KSDLRDF-KLLIAQIKVME----------SKHSEALRVYEELVK---- 286 (355)
Q Consensus 226 ~~~~~~~~~~~a~~~~~~Al~~~~~--~~~--~~~~~~~-~~~la~~~~~~----------g~~~~A~~~~~~~l~---- 286 (355)
-|.. +-..+.....++.+.++++ ... .+....+ +-..|+.|... .-.+.|...|+++++
T Consensus 85 ~yr~--kie~EL~~iC~~il~lld~~Lip~a~~~eskVFy~KmKGDyyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~ 162 (234)
T 2br9_A 85 EYRQ--MVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMT 162 (234)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHhHHHHHHHHhhccCCCchHhHHHHHHHhccHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHc
Confidence 2211 1122333445566666666 111 1122222 23345444322 223567788888774
Q ss_pred -hCCCChH---HHHHHHHHHH-HcCCHHHHHHHHHHHHH
Q 040440 287 -EEPRDFR---PYLCQGIIYT-LLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 287 -~~~~~~~---~~~~l~~~~~-~~g~~~~A~~~~~~~l~ 320 (355)
+.|.++. ...+.+..|+ .+|+.++|...-++++.
T Consensus 163 ~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 163 ELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4565552 2333444444 58999999888887765
No 312
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=50.93 E-value=52 Score=25.12 Aligned_cols=67 Identities=15% Similarity=0.085 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhccCCchH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 040440 241 IEKAMERCKKEKKKSDLR------DFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRK 307 (355)
Q Consensus 241 ~~~Al~~~~~~~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~ 307 (355)
++.|+.+++.+....+.. -+......++.+.|.+++|.+++++....++.+......|..+-.+...
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~ 166 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDT 166 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCC
Confidence 566666666633322211 1223345677899999999999999888777666555555555444443
No 313
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=50.57 E-value=38 Score=23.33 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=12.2
Q ss_pred HHccCHHHHHHHHHHHHH
Q 040440 269 VMESKHSEALRVYEELVK 286 (355)
Q Consensus 269 ~~~g~~~~A~~~~~~~l~ 286 (355)
-..|+|++|+.+|..+++
T Consensus 29 D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 29 DKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 345777777777777665
No 314
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=48.44 E-value=77 Score=23.18 Aligned_cols=74 Identities=11% Similarity=-0.013 Sum_probs=46.9
Q ss_pred HHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHH-HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 241 IEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHS-EALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEK 317 (355)
Q Consensus 241 ~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 317 (355)
|.+.+..++......-.....+.+|..|+...++. +..+.....+.+ ...-.+.+-++|.-.|++++|+..-+.
T Consensus 24 Ys~VI~~L~~~~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itl---kSde~yL~YWIyiGRg~~~eAlDiA~~ 98 (161)
T 2ynq_A 24 YSDVITTLEDYAPEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITL---KTDEQYMLYWIYIGRSQSEEALELART 98 (161)
T ss_dssp HHHHHHHHTTSCGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCT---TSCHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCc---cCCHHHHHHHHHHcCCchHHHHHHHHh
Confidence 88888888885555555667788888888876654 223333222222 222334455677778999999887554
No 315
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=46.51 E-value=53 Score=20.91 Aligned_cols=18 Identities=17% Similarity=0.137 Sum_probs=12.6
Q ss_pred HHccCHHHHHHHHHHHHH
Q 040440 269 VMESKHSEALRVYEELVK 286 (355)
Q Consensus 269 ~~~g~~~~A~~~~~~~l~ 286 (355)
-..|+|++|+.+|..+++
T Consensus 24 D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 24 DTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 345777777777777665
No 316
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=46.49 E-value=34 Score=26.06 Aligned_cols=40 Identities=15% Similarity=0.102 Sum_probs=26.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 040440 296 LCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDN 335 (355)
Q Consensus 296 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 335 (355)
.....++.+.|.+++|.+.|++....++.+...+..+..+
T Consensus 121 ~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~I 160 (211)
T 3bqo_A 121 IQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMI 160 (211)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3456788999999999999999988776665555444433
No 317
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=45.73 E-value=1.3e+02 Score=24.94 Aligned_cols=107 Identities=11% Similarity=-0.078 Sum_probs=67.7
Q ss_pred hccCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAAN------PNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL-----EPNEFEWQLLKAQVQS 194 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~ 194 (355)
.+.++|=||.+.++....+. .+-.+.++.-+..+.+.|++..|.++..-+++. .+-+....-.+..++.
T Consensus 24 I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 24 IKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred hhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 55568888888887776531 123456677777888999999888865555443 2334445555666554
Q ss_pred HcCCHH-HHHHHHHHHHhh-------CCCCHHHHHHHHHHHhccCc
Q 040440 195 YAGESE-AAIKGFEEILRK-------DPLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 195 ~~g~~~-~A~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~~~ 232 (355)
....-+ +=.++.+++++. .-.+++.+..+|..|...++
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~ 149 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDF 149 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCC
Confidence 433211 123444555543 22588999999999999888
No 318
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=44.35 E-value=1.5e+02 Score=25.23 Aligned_cols=44 Identities=20% Similarity=0.212 Sum_probs=30.2
Q ss_pred HHHHHHHHHHh-----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 277 ALRVYEELVKE-----EPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 277 A~~~~~~~l~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
++..|.+++.. .......|..+|-.+++.+++.+|+..+..+-.
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 55556665542 234566777788888888888888888877654
No 319
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=43.95 E-value=61 Score=20.93 Aligned_cols=25 Identities=12% Similarity=0.089 Sum_probs=12.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLI 176 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~ 176 (355)
....|.-+++.++|.+|..+|+++.
T Consensus 56 ~i~eak~~y~~~ny~ea~~l~~k~~ 80 (106)
T 2vkj_A 56 LIAEGKDLFETANYGEALVFFEKAL 80 (106)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHH
Confidence 3334444445555555555555544
No 320
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=43.77 E-value=66 Score=21.01 Aligned_cols=32 Identities=6% Similarity=0.023 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 040440 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIE 177 (355)
Q Consensus 131 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 177 (355)
.+.|+.++.++++. -..|+|++|+.+|..+++
T Consensus 12 l~~Ai~lv~~Ave~---------------D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 12 STAAVAVLKRAVEL---------------DAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHHHHH---------------HHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------HHhCCHHHHHHHHHHHHH
Confidence 34566666665542 345666666666665553
No 321
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=42.37 E-value=47 Score=29.46 Aligned_cols=54 Identities=15% Similarity=0.068 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHhhc-----------------cCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 040440 234 LNEVEKRIEKAMERCKKEK-----------------KKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKE 287 (355)
Q Consensus 234 ~~~a~~~~~~Al~~~~~~~-----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 287 (355)
++..+..+++|+..+.... .......++..+|++|+..|+|++|....++++..
T Consensus 156 y~~I~~DL~~A~~~Lp~~~~~~~~~~~~~~~~~~~~~r~tk~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 156 LSYAKAELLTAIEDLPYQYGTQTNLYYGSYGAQWQGKLFNKLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHHHCCSSCCCSSSCBTTBCGGGGTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCccccccccccccccccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 3444556788887765411 13345567888999999999999999999999864
No 322
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=41.89 E-value=98 Score=22.47 Aligned_cols=48 Identities=8% Similarity=-0.040 Sum_probs=37.3
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 040440 242 EKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP 289 (355)
Q Consensus 242 ~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 289 (355)
.+....+...........+|...|..+...|++++|.++|+..++...
T Consensus 85 ~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 85 HQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp HHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 333444444555667788899999999999999999999999998754
No 323
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=41.47 E-value=73 Score=20.88 Aligned_cols=23 Identities=9% Similarity=0.003 Sum_probs=12.1
Q ss_pred HHHHHccCHHHHHHHHHHHHHcC
Q 040440 157 EVRIKSQKLVEAVDVIDRLIELE 179 (355)
Q Consensus 157 ~~~~~~g~~~~A~~~~~~~~~~~ 179 (355)
..++..|+|=+|-++++..-...
T Consensus 9 ~~lfn~g~~~eaHEvlE~~W~~~ 31 (94)
T 2cwy_A 9 LGLWRAGRYYEVHEVLEPYWLKA 31 (94)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCChHHHHHHHHHHHhhC
Confidence 34444555555555555555444
No 324
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=41.36 E-value=0.96 Score=40.21 Aligned_cols=132 Identities=11% Similarity=0.033 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
+|..|++..+++ +++..|......+...+++.-|-.+--.++- .++. +-.+...|...|.+++-+.+++..
T Consensus 185 ~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-hade---L~elv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 185 EYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADE---LEELINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp GGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSC---CSGGGSSSSTTCCCTTSTTTHHHH
T ss_pred HHHHHHHHHHhc-----CChhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHH---HHHHHHHHHhCCCHHHHHHHHHHH
Confidence 445554444333 5666777777777888887777666555442 2222 122345577889999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh---hccCCc------hHHHHHHHHHHHHHccCHHHHHH
Q 040440 210 LRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK---EKKKSD------LRDFKLLIAQIKVMESKHSEALR 279 (355)
Q Consensus 210 ~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~---~~~~~~------~~~~~~~la~~~~~~g~~~~A~~ 279 (355)
+.+..-+...+..||.+|.+-. .++-.+.++- .-+.|. ....|..+..+|..-.+|+.|..
T Consensus 256 lglErAHmGmFTELaILYsKY~---------PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 256 LGLERAHMGMFTELAILYSKFK---------PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TTSTTCCHHHHHHHHHHHHSSC---------TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hCCCchhHHHHHHHHHHHHhcC---------HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 9988889999999999998875 4666666655 112222 23347778888888899987754
No 325
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=40.89 E-value=1.3e+02 Score=23.56 Aligned_cols=164 Identities=7% Similarity=-0.039 Sum_probs=89.2
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHH----cCCC-chHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040440 154 TLMEVRIKSQKLVEAVDVIDRLIE----LEPN-EFEWQLLKAQVQSY-AGESEAAIKGFEEILRKDPLRVEAYHGLVMAY 227 (355)
Q Consensus 154 ~la~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 227 (355)
.++.+.-+.++|++.....+++++ .+++ +.+-...+..+|-. .|....+...+...-+....+ +....+..-|
T Consensus 11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissiEqkek~~-~~~~~~i~~y 89 (227)
T 2o8p_A 11 YRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDDEERHLLTLCIKHKISDYRTMTSQVLQEQTKQLNN-DELVKICSEY 89 (227)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSC-HHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHcCC-HHHHHHHHHH
Confidence 667778888999999999998887 5553 23334444444322 244444444444433332122 2222223323
Q ss_pred hccCchHHHHHHHHHHHHHHHHhh--ccCCchHH-HHHHHHHHHH-----HccCHHHHHHHHHHHHHh-----CCCC---
Q 040440 228 DGSDKKLNEVEKRIEKAMERCKKE--KKKSDLRD-FKLLIAQIKV-----MESKHSEALRVYEELVKE-----EPRD--- 291 (355)
Q Consensus 228 ~~~~~~~~~a~~~~~~Al~~~~~~--~~~~~~~~-~~~~la~~~~-----~~g~~~~A~~~~~~~l~~-----~~~~--- 291 (355)
... -..+......+.+.++++. ... .... ++-..|+.|. ..|+.+.|...|+.+.+. .|.+
T Consensus 90 r~k--ie~EL~~iC~dil~lld~~Lip~a-EskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L~pthPir 166 (227)
T 2o8p_A 90 VFS--LRKDIKAFLQSFEDCVDRLVEKSF-FSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKIEQLP 166 (227)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHTCCCCSH-HHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGGGSC
T ss_pred HHH--HHHHHHHHHhhHHHHHHHhccCcH-HHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhCCCCChHH
Confidence 221 1223334455666666661 111 1222 2333455443 346788999999998763 2333
Q ss_pred hHHHHHHHHH-HHHcCCHHHHHHHHHHHHHh
Q 040440 292 FRPYLCQGII-YTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 292 ~~~~~~l~~~-~~~~g~~~~A~~~~~~~l~~ 321 (355)
.....+.+.. |..+++.++|....++++..
T Consensus 167 LGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~ 197 (227)
T 2o8p_A 167 LGFIQNLAYILSEKYGEKKQVFNMLNSLGKI 197 (227)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3344444444 44689999999999998654
No 326
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=40.10 E-value=49 Score=29.69 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHh-----hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 040440 235 NEVEKRIEKAMERCKK-----EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKE 287 (355)
Q Consensus 235 ~~a~~~~~~Al~~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 287 (355)
+..+..+++|+..+.. .........++..+|++|+..++|++|....++++..
T Consensus 154 ~~I~~dL~~A~~~Lp~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 154 DFILEDLKKATEMLPASYGSREKGRATKGAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHHHSCSCCCSTTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCccccCCcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445557777776643 1223445567888999999999999999999999864
No 327
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=39.93 E-value=1.4e+02 Score=23.59 Aligned_cols=169 Identities=14% Similarity=0.071 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCC--CCHHHHHHHH
Q 040440 149 IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE-FEWQLLKAQVQSY-AGESEAAIKGFEEILRKDP--LRVEAYHGLV 224 (355)
Q Consensus 149 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~ 224 (355)
-+-+..+|.+.-+.++|++.+++.+++.+.++.- .+-...+..+|-. .|....+...+....+... .+.. ...+.
T Consensus 8 re~~v~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYKNvig~rR~swRiissieqke~~~~~~~-~~~~i 86 (236)
T 3iqu_A 8 RASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNEEGSEE-KGPEV 86 (236)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCC-CCSHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCHH-HHHHH
Confidence 3456677888889999999999999998886643 3344455554432 3444555555543332210 1100 00011
Q ss_pred HHHhccCchHHHHHHHHHHHHHHHHh--hc--cCCchHHH-HHHHHHHHHH-----ccC-----HHHHHHHHHHHHH---
Q 040440 225 MAYDGSDKKLNEVEKRIEKAMERCKK--EK--KKSDLRDF-KLLIAQIKVM-----ESK-----HSEALRVYEELVK--- 286 (355)
Q Consensus 225 ~~~~~~~~~~~~a~~~~~~Al~~~~~--~~--~~~~~~~~-~~~la~~~~~-----~g~-----~~~A~~~~~~~l~--- 286 (355)
.-|.. +-..+.....++.+.+++. .. ..+....+ +-..|+.|.. .|+ .+.|...|+++.+
T Consensus 87 ~~yr~--kie~EL~~iC~dil~lld~~Lip~a~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a~~aY~~A~~iA~ 164 (236)
T 3iqu_A 87 REYRE--KVETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISK 164 (236)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHhcCccCCchHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 11110 0012223345556666665 11 11222222 3334655542 233 4677788888764
Q ss_pred --hCCCChH---HHHHHHHHH-HHcCCHHHHHHHHHHHHH
Q 040440 287 --EEPRDFR---PYLCQGIIY-TLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 287 --~~~~~~~---~~~~l~~~~-~~~g~~~~A~~~~~~~l~ 320 (355)
+.|.++. ...+.+..| ..+++.++|....++++.
T Consensus 165 ~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 165 KEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred hhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4565653 233344443 467999999887777654
No 328
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=39.43 E-value=79 Score=20.70 Aligned_cols=55 Identities=13% Similarity=0.001 Sum_probs=39.9
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCh-H-----HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 264 IAQIKVMESKHSEALRVYEELVKEEPRDF-R-----PYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 264 la~~~~~~g~~~~A~~~~~~~l~~~~~~~-~-----~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
.|..++..|+|=+|-++++......++.. . +....|......|+. |...+.+++.
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 35566778999999999999988875421 1 223344555678888 9999999877
No 329
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=39.29 E-value=1.4e+02 Score=25.99 Aligned_cols=95 Identities=12% Similarity=0.024 Sum_probs=55.3
Q ss_pred HHHHHHHHHcc---CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHH
Q 040440 153 QTLMEVRIKSQ---KLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRK-----DPLRVEAYHGLV 224 (355)
Q Consensus 153 ~~la~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~l~ 224 (355)
..|-..++..| +|..|+-.+-.+-+..|.... ..++.+|.+++.. ...+...|..+|
T Consensus 261 q~LLWlLyd~GhL~rYPmALgnLgDLEe~~pt~gr---------------~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlg 325 (550)
T 3u84_A 261 QKLLWLLYDLGHLERYPMALGNLADLEELEPTPGR---------------PDPLTLYHKGIASAKTYYRDEHIYPYMYLA 325 (550)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTC---------------CCHHHHHHHHHHHHHHHSTTCCSHHHHHHH
T ss_pred HHHHHHHHhccchhhCchhhcchhhHhhcCCCCCC---------------CCHHHHHHHHHHHHHHHhccCCccceeecc
Confidence 34444555544 455566666665555543211 0145555555543 234566788889
Q ss_pred HHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHH
Q 040440 225 MAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLL 263 (355)
Q Consensus 225 ~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~ 263 (355)
..+++.++ +.+|+..+.+|-.....-+-..++.++|-.
T Consensus 326 Gy~yR~~~-~reAl~~WA~Aa~Vi~~YNY~reDeEIYKE 363 (550)
T 3u84_A 326 GYHCRNRN-VREALQAWADTATVIQDYNYCREDEEIYKE 363 (550)
T ss_dssp HHHHHTTC-HHHHHHHHHHHHHHHTTSCCCGGGHHHHHH
T ss_pred hhhhhcch-HHHHHHHHHHHHHHHHHcCCCcchHHHHHH
Confidence 99999888 666776677776666664445555555443
No 330
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=38.61 E-value=31 Score=30.66 Aligned_cols=53 Identities=19% Similarity=0.187 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHh--hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 040440 234 LNEVEKRIEKAMERCKK--EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVK 286 (355)
Q Consensus 234 ~~~a~~~~~~Al~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 286 (355)
++..+..+++|+..+.. .........++..+|++|+..++|++|....++++.
T Consensus 154 y~~I~~DL~~A~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 154 WAQAKEDLKTAASLLPITNKIGKPTQGAAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp HHHHHHHHHHHHHHSCSSCSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 34445567777776543 122344556788899999999999999999998874
No 331
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=38.30 E-value=65 Score=30.01 Aligned_cols=47 Identities=19% Similarity=0.065 Sum_probs=40.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Q 040440 262 LLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKK 308 (355)
Q Consensus 262 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~ 308 (355)
...|+..+..|+|.-|.+..+.++..+|++..+...++.+|.++|..
T Consensus 453 ~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 453 LEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 34466667889999999999999999999999999999999988743
No 332
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=38.20 E-value=1.5e+02 Score=23.56 Aligned_cols=167 Identities=13% Similarity=0.095 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHH
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF-EWQLLKAQVQSY-AGESEAAIKGFEEILRKDP--LRVEAYHGLVMA 226 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~ 226 (355)
-+..++.+.-+.++|++.+.+.+++++.++.-. +-...+..+|-. .|....+...+....+... .+. -...+..-
T Consensus 6 ~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissieqke~~~~~~-~~~~~i~~ 84 (248)
T 3uzd_A 6 QLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNE-KKIEMVRA 84 (248)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC-C-HHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhccCCH-HHHHHHHH
Confidence 455677888888999999999999888766432 233444444322 2444444444433332211 110 01111222
Q ss_pred HhccCchHHHHHHHHHHHHHHHHh--hc--cCC--chHHH-HHHHHHHHHHc----------cCHHHHHHHHHHHHH---
Q 040440 227 YDGSDKKLNEVEKRIEKAMERCKK--EK--KKS--DLRDF-KLLIAQIKVME----------SKHSEALRVYEELVK--- 286 (355)
Q Consensus 227 ~~~~~~~~~~a~~~~~~Al~~~~~--~~--~~~--~~~~~-~~~la~~~~~~----------g~~~~A~~~~~~~l~--- 286 (355)
|.. +-..+......+.+.++++ +. ..+ ....+ +-..|..|... .-.+.|...|+++.+
T Consensus 85 yr~--kie~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a~~aY~~A~~iA~ 162 (248)
T 3uzd_A 85 YRE--KIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISK 162 (248)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 211 1122233445566666666 12 222 22222 33345555432 123567788887764
Q ss_pred --hCCCChH---HHHHHHHHH-HHcCCHHHHHHHHHHHHH
Q 040440 287 --EEPRDFR---PYLCQGIIY-TLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 287 --~~~~~~~---~~~~l~~~~-~~~g~~~~A~~~~~~~l~ 320 (355)
+.|.++. ...+.+..| ..+++.++|....++++.
T Consensus 163 ~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 163 EHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred hhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4565553 233344443 458999999888777754
No 333
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=37.46 E-value=1.6e+02 Score=23.62 Aligned_cols=169 Identities=13% Similarity=0.088 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh--CCCCHHHHHHHH
Q 040440 149 IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE-FEWQLLKAQVQSY-AGESEAAIKGFEEILRK--DPLRVEAYHGLV 224 (355)
Q Consensus 149 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~ 224 (355)
-+-+..++.+.-+.++|++.+++.+++.+.++.- .+-...+..+|-. .|....+...+....+. ..++. -...+.
T Consensus 31 re~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~~-~~~~~i 109 (261)
T 3ubw_A 31 REDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGE-DKLKMI 109 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCH-HHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhccccH-HHHHHH
Confidence 4456677888888999999999999998876643 2334444444422 24444444444333322 11221 122222
Q ss_pred HHHhccCchHHHHHHHHHHHHHHHHh--hc--cCCchHHH-HHHHHHHHHHc-----c-----CHHHHHHHHHHHHH---
Q 040440 225 MAYDGSDKKLNEVEKRIEKAMERCKK--EK--KKSDLRDF-KLLIAQIKVME-----S-----KHSEALRVYEELVK--- 286 (355)
Q Consensus 225 ~~~~~~~~~~~~a~~~~~~Al~~~~~--~~--~~~~~~~~-~~~la~~~~~~-----g-----~~~~A~~~~~~~l~--- 286 (355)
.-|... -..+.....++.+.++++ +. ..+....+ +-..|+.|.-. | -.+.|...|+++.+
T Consensus 110 ~~yr~k--Ie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~ 187 (261)
T 3ubw_A 110 REYRQM--VETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAM 187 (261)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 222211 122333445566666665 11 11222222 22345554322 2 23567788888764
Q ss_pred --hCCCChH---HHHHHHHHHH-HcCCHHHHHHHHHHHHH
Q 040440 287 --EEPRDFR---PYLCQGIIYT-LLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 287 --~~~~~~~---~~~~l~~~~~-~~g~~~~A~~~~~~~l~ 320 (355)
+.|.++. ...+.+..|+ .+++.++|....++++.
T Consensus 188 ~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 188 TELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred hhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4565542 2334444444 47999999888777754
No 334
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=37.23 E-value=1.5e+02 Score=23.31 Aligned_cols=156 Identities=10% Similarity=-0.036 Sum_probs=78.1
Q ss_pred CCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHcCC--CchHHHHHHHHHHHHcCCHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAANPN-DIEALQTLMEVRIK-SQKLVEAVDVIDRLIELEP--NEFEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~ 204 (355)
.+|++.....+++.+.+++ +.+-.+.+..+|-. .|....+...+....+... .+ .....+..-|.. .--.+-..
T Consensus 19 eRyddm~~~mk~v~~~~~eLt~EERnLLsvayKnvig~rR~swRiissieqk~~~k~~-~~~~~~i~~yr~-kie~EL~~ 96 (234)
T 2br9_A 19 ERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGG-EDKLKMIREYRQ-MVETELKL 96 (234)
T ss_dssp TCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHH-HHHHHHHH
T ss_pred hCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCc-hHHHHHHHHHHH-HHHHHHHH
Confidence 4999999999999987765 45555566555542 2334444444433222110 11 111111111111 11111122
Q ss_pred HHHHHHhh-------CCCCHH--H--HHHHHHHHh-----ccCc----hHHHHHHHHHHHHHHHHh--hccCCchHHHHH
Q 040440 205 GFEEILRK-------DPLRVE--A--YHGLVMAYD-----GSDK----KLNEVEKRIEKAMERCKK--EKKKSDLRDFKL 262 (355)
Q Consensus 205 ~~~~~~~~-------~p~~~~--~--~~~l~~~~~-----~~~~----~~~~a~~~~~~Al~~~~~--~~~~~~~~~~~~ 262 (355)
.++.++.+ ...+.+ + +...|..|. ..|+ ..+.+...|++|.++.+. ...+|....+..
T Consensus 97 iC~~il~lld~~Lip~a~~~eskVFy~KmKGDyyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirLgLaL 176 (234)
T 2br9_A 97 ICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLAL 176 (234)
T ss_dssp HHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHhHHHHHHHHhhccCCCchHhHHHHHHHhccHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHccCCCCCcHHHHHHH
Confidence 22222221 112221 1 112233322 1222 134567788899888765 233444555566
Q ss_pred HHHHHHHH-ccCHHHHHHHHHHHHH
Q 040440 263 LIAQIKVM-ESKHSEALRVYEELVK 286 (355)
Q Consensus 263 ~la~~~~~-~g~~~~A~~~~~~~l~ 286 (355)
+.+.+|+. .++.++|....++++.
T Consensus 177 N~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 177 NFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666665 7999999988888765
No 335
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=37.15 E-value=91 Score=27.77 Aligned_cols=30 Identities=17% Similarity=0.137 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Q 040440 149 IEALQTLMEVRIKSQKLVEAVDVIDRLIEL 178 (355)
Q Consensus 149 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 178 (355)
..++..+|.+|+..|+|++|+...++++..
T Consensus 203 ~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 203 EVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 457788999999999999999999999865
No 336
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=36.59 E-value=98 Score=27.17 Aligned_cols=46 Identities=17% Similarity=0.204 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHcCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 040440 132 EEKEKEIEQHLAANPN--------DIEALQTLMEVRIKSQKLVEAVDVIDRLIE 177 (355)
Q Consensus 132 ~~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 177 (355)
+..+..++.++..-|. ...++..++.+|+..|+|++|+...++++.
T Consensus 165 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 165 DFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 3345555555543332 345778889999999999999999998885
No 337
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=35.74 E-value=1.3e+02 Score=22.04 Aligned_cols=83 Identities=17% Similarity=0.139 Sum_probs=52.1
Q ss_pred hhhhhhccCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHccCHHH-HHHHHHHHHHcCCCchHHHHHHHHHHHHcC
Q 040440 121 DTTSAREDVSYEEKEKEIEQHLAANPN--DIEALQTLMEVRIKSQKLVE-AVDVIDRLIELEPNEFEWQLLKAQVQSYAG 197 (355)
Q Consensus 121 ~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 197 (355)
....+|-..+|.+.+..++.. +|+ .....+.+|..|+...++.+ -.+.....+.+..+ -.+.+-++|.-.|
T Consensus 14 ~a~~afl~~dYs~VI~~L~~~---~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkSd---e~yL~YWIyiGRg 87 (161)
T 2ynq_A 14 QSTELFLQNKYSDVITTLEDY---APEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKTD---EQYMLYWIYIGRS 87 (161)
T ss_dssp HHHHHHTTTCHHHHHHHHTTS---CGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTSC---HHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHhcC---ChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccCC---HHHHHHHHHHcCC
Confidence 334457677898888777653 444 46778899999998877653 33333333322221 2223345566779
Q ss_pred CHHHHHHHHHHH
Q 040440 198 ESEAAIKGFEEI 209 (355)
Q Consensus 198 ~~~~A~~~~~~~ 209 (355)
++++|+.+-+.+
T Consensus 88 ~~~eAlDiA~~L 99 (161)
T 2ynq_A 88 QSEEALELARTI 99 (161)
T ss_dssp CHHHHHHHHHHH
T ss_pred chHHHHHHHHhc
Confidence 999999886654
No 338
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=35.56 E-value=78 Score=28.50 Aligned_cols=54 Identities=6% Similarity=0.129 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHh-------hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 040440 234 LNEVEKRIEKAMERCKK-------EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKE 287 (355)
Q Consensus 234 ~~~a~~~~~~Al~~~~~-------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 287 (355)
++.....+++|+..+.. .........++..+|++|+..++|++|....++++..
T Consensus 167 ~~~I~~DL~~A~~~Lp~~~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~~ 227 (528)
T 3i4g_A 167 LKWCVTEFTAAAADLPRFSAIPAGEAGRACKQAALAFLGRTCMLQKDWKSGAKAFHDIMEL 227 (528)
T ss_dssp HHHHHHHHHHHHHHSCCGGGCCGGGTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccCCcccCCcCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 34455667888777641 1223445567888999999999999999999999864
No 339
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=34.64 E-value=1.8e+02 Score=23.35 Aligned_cols=168 Identities=13% Similarity=0.103 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC---CC-chHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhC--CCCHHHHHH
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRLIELE---PN-EFEWQLLKAQVQSY-AGESEAAIKGFEEILRKD--PLRVEAYHG 222 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~--p~~~~~~~~ 222 (355)
+-+..++.+.-+.++|++.+.+.+++++.+ ++ ..+-...+..+|-. .|....+...+....+.. ..+. ....
T Consensus 29 e~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAyKNvIg~rR~swRiissieqke~~k~~~-~~~~ 107 (260)
T 2npm_A 29 ESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAYKNAVGSRRSSWRIISSVEQKEHSRNAE-DASK 107 (260)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCH-HHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccCcH-HHHH
Confidence 345567777788899999999999998876 43 23334444444432 233344444443322221 1121 1112
Q ss_pred HHHHHhccCchHHHHHHHHHHHHHHHHh--hcc--CCchHHH-HHHHHHHHHHc----------cCHHHHHHHHHHHHHh
Q 040440 223 LVMAYDGSDKKLNEVEKRIEKAMERCKK--EKK--KSDLRDF-KLLIAQIKVME----------SKHSEALRVYEELVKE 287 (355)
Q Consensus 223 l~~~~~~~~~~~~~a~~~~~~Al~~~~~--~~~--~~~~~~~-~~~la~~~~~~----------g~~~~A~~~~~~~l~~ 287 (355)
+..-|.. +-..+.....++.+.++++ ... .+....+ +-..|+.|... .-.+.|...|+++.+.
T Consensus 108 ~i~~yr~--kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~i 185 (260)
T 2npm_A 108 MCGKYRS--KVEAELTDICNDILTMLDKHLIPTATSPDSKVFYFKMKGDYHRYISEFSTGDSKQSSAEDALKAYKDATVV 185 (260)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHhhHHHHHHHhhccCCCchHHHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence 2222211 1123333445566666666 111 1122222 23335544322 2235788888888764
Q ss_pred ----CCCChH---HHHHHHHHHH-HcCCHHHHHHHHHHHHH
Q 040440 288 ----EPRDFR---PYLCQGIIYT-LLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 288 ----~~~~~~---~~~~l~~~~~-~~g~~~~A~~~~~~~l~ 320 (355)
.|.++. ...+.+..|+ .+|+.++|...-++++.
T Consensus 186 A~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 186 AKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444442 2333444444 48999999998888775
No 340
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=34.06 E-value=1.1e+02 Score=27.03 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 040440 149 IEALQTLMEVRIKSQKLVEAVDVIDRLIE 177 (355)
Q Consensus 149 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 177 (355)
..++..+|.+|+..|+|++|+...++++.
T Consensus 196 ~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 196 WAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 45788889999999999999999998885
No 341
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.67 E-value=1.2e+02 Score=20.80 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=9.2
Q ss_pred ccCHHHHHHHHHHHHH
Q 040440 271 ESKHSEALRVYEELVK 286 (355)
Q Consensus 271 ~g~~~~A~~~~~~~l~ 286 (355)
.|+.+.|+++|++.+.
T Consensus 35 ~g~k~~Al~lYk~GI~ 50 (116)
T 2dl1_A 35 LGQKEEAKNYYKQGIG 50 (116)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 3666666666665543
No 342
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=32.55 E-value=58 Score=22.43 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=10.6
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 040440 194 SYAGESEAAIKGFEEILR 211 (355)
Q Consensus 194 ~~~g~~~~A~~~~~~~~~ 211 (355)
-..|+|++|+.+|..+++
T Consensus 29 D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 29 DKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 345666666666666554
No 343
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=31.70 E-value=0.053 Score=47.92 Aligned_cols=145 Identities=13% Similarity=0.076 Sum_probs=99.7
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040440 147 NDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMA 226 (355)
Q Consensus 147 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 226 (355)
+.+.+|..+|.++...++..+|++.|-++ +++..+.....+..+.|.|++-+.+++-+-+. -..+.+-..+..+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~a 125 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFA 125 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHH
Confidence 56788999999999999999999988654 34444556666777899999999988776654 3334444556777
Q ss_pred HhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 040440 227 YDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLR 306 (355)
Q Consensus 227 ~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g 306 (355)
|.+.++ +.+-.++ -..++... ....|.=.+..|.|+.|.-+|.. ..-|..|+.++.++|
T Consensus 126 yAk~~r--------L~elEef----l~~~N~A~-iq~VGDrcf~e~lYeAAKilys~--------isN~akLAstLV~L~ 184 (624)
T 3lvg_A 126 LAKTNR--------LAELEEF----INGPNNAH-IQQVGDRCYDEKMYDAAKLLYNN--------VSNFGRLASTLVHLG 184 (624)
T ss_dssp HHTSCS--------SSTTTST----TSCCSSSC-THHHHHHHHHSCCSTTSSTTGGG--------SCCCTTTSSSSSSCS
T ss_pred HHhhCc--------HHHHHHH----HcCCCccc-HHHHHHHHHHccCHHHHHHHHHh--------CccHHHHHHHHHHHH
Confidence 777776 2222111 11222222 24457778888998888777743 233456888999999
Q ss_pred CHHHHHHHHHHH
Q 040440 307 KKDEAEKQFEKF 318 (355)
Q Consensus 307 ~~~~A~~~~~~~ 318 (355)
+|..|.+.-+++
T Consensus 185 ~yq~AVdaArKA 196 (624)
T 3lvg_A 185 EYQAAVDGARKA 196 (624)
T ss_dssp GGGSSTTTTTTC
T ss_pred HHHHHHHHHHhc
Confidence 999998776554
No 344
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=31.04 E-value=1.1e+02 Score=26.90 Aligned_cols=48 Identities=19% Similarity=0.194 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHcCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Q 040440 131 YEEKEKEIEQHLAANPN--------DIEALQTLMEVRIKSQKLVEAVDVIDRLIEL 178 (355)
Q Consensus 131 ~~~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 178 (355)
++..++.++.++..-|. ...++..+|.+|+..|+|++|+...++++..
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 34445555555554332 3457888999999999999999999999864
No 345
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=30.38 E-value=84 Score=18.32 Aligned_cols=41 Identities=17% Similarity=-0.053 Sum_probs=17.5
Q ss_pred ccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHH
Q 040440 271 ESKHSEALRVYEELVKEEPR-DFRPYLCQGIIYTLLRKKDEAE 312 (355)
Q Consensus 271 ~g~~~~A~~~~~~~l~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 312 (355)
....++|..+.+-. ...+. ...+-......+...|+|++|+
T Consensus 19 ~HcH~EA~tIA~~L-~~~~~~eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 19 HHCHQEAASIADWL-AQEECMAECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp TTCHHHHHHHHHHH-HTSSTTHHHHHHHHHHHHHHC-------
T ss_pred chHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHccchHhHhh
Confidence 44566666555443 33333 2333444556677778887775
No 346
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=30.05 E-value=2.1e+02 Score=22.88 Aligned_cols=156 Identities=10% Similarity=-0.038 Sum_probs=79.8
Q ss_pred CCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHc--CCCchHHHHHHHHHHHHcCCHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAANPN-DIEALQTLMEVRIK-SQKLVEAVDVIDRLIEL--EPNEFEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~ 204 (355)
.+|++..+..+++.+.+++ +.+-.+.+..+|-. .|....+...+....+. ...+ .....+..-|.. .=-.+-..
T Consensus 45 eRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~-~~~~~~i~~yr~-kIe~EL~~ 122 (261)
T 3ubw_A 45 ERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGG-EDKLKMIREYRQ-MVETELKL 122 (261)
T ss_dssp TCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHH-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhcccc-HHHHHHHHHHHH-HHHHHHHH
Confidence 3999999999999987765 45556666665542 34444555554433322 1111 112222221211 00111222
Q ss_pred HHHHHHhh-------CCCCHHH----HHHHHHHHh-----ccCch----HHHHHHHHHHHHHHHHh--hccCCchHHHHH
Q 040440 205 GFEEILRK-------DPLRVEA----YHGLVMAYD-----GSDKK----LNEVEKRIEKAMERCKK--EKKKSDLRDFKL 262 (355)
Q Consensus 205 ~~~~~~~~-------~p~~~~~----~~~l~~~~~-----~~~~~----~~~a~~~~~~Al~~~~~--~~~~~~~~~~~~ 262 (355)
.++.++.+ ...+.+. +...|..|. ..|+. .+.+...|++|.++... ...+|....+..
T Consensus 123 iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~~L~pThPirLGLaL 202 (261)
T 3ubw_A 123 ICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLAL 202 (261)
T ss_dssp HHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHH
Confidence 22222222 1222222 113344332 12222 34557788888888765 233454555556
Q ss_pred HHHHHHHH-ccCHHHHHHHHHHHHH
Q 040440 263 LIAQIKVM-ESKHSEALRVYEELVK 286 (355)
Q Consensus 263 ~la~~~~~-~g~~~~A~~~~~~~l~ 286 (355)
+.+.+|+. .++.++|....++++.
T Consensus 203 NfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 203 NFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666665 6999999888887764
No 347
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=29.87 E-value=91 Score=21.79 Aligned_cols=56 Identities=13% Similarity=0.189 Sum_probs=31.4
Q ss_pred HHHHHHHHccCHHHHHHHHHHH---HHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 040440 154 TLMEVRIKSQKLVEAVDVIDRL---IELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRK 212 (355)
Q Consensus 154 ~la~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 212 (355)
.....|+..++.+..+..++.+ ++..|... .........-.+..+|.+.+++..+.
T Consensus 45 eASrlyf~~~n~~~m~~~L~pLh~~l~~~PeT~---~E~sF~~~fG~~L~~A~~~~~~y~~t 103 (126)
T 2npu_A 45 EASRLYFGERNVKGMFEVLEPLHAMMERGPQTL---KETSFNQAYGRDLMEAQEWCRKYMKS 103 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHccCCCCH---HHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3445666777888877777666 33345432 22222233334566777777776543
No 348
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=29.55 E-value=3e+02 Score=24.45 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHhccCc
Q 040440 198 ESEAAIKGFEEILRK-DPLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 198 ~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~ 232 (355)
.|++|+++++++-.. +++....+..++..|...|+
T Consensus 454 ~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aGD 489 (526)
T 2wb7_A 454 EYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAGD 489 (526)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhccH
Confidence 456677777666532 23333444455555544444
No 349
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=28.35 E-value=5e+02 Score=26.63 Aligned_cols=157 Identities=15% Similarity=0.124 Sum_probs=0.0
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc------------------------------------CHHHHHH
Q 040440 127 EDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQ------------------------------------KLVEAVD 170 (355)
Q Consensus 127 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g------------------------------------~~~~A~~ 170 (355)
.+.+.+++.++|+++++..|++..++..+...+.... ..++-++
T Consensus 1119 ~k~~~~~~~~~~~~l~~~~P~~l~~~~~~l~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~ 1198 (1354)
T 3lxu_X 1119 VKCELEMAEKIYNDVVAAHPKHLQANLLLIQNIESNQLKSQLPLTFVNAQKTSPPEAGESADKQKEDQKKVRSALERIVK 1198 (1354)
T ss_dssp TTSCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHSSCCCCHHHHHHTTSCCCSSCTTHHHHTTHHHHHHHHHHHHHHH
T ss_pred hhcChHHHHHHHHHHHHHCCccHHHHHHHHHhhhhhhhhcccccccccccccccccccccccccchhhhhHHHHHHHHHH
Q ss_pred HHHHHHHcCCCchHH----------------------------------HHHHHHHHHHcCCHHHHHHHHHHHHhh----
Q 040440 171 VIDRLIELEPNEFEW----------------------------------QLLKAQVQSYAGESEAAIKGFEEILRK---- 212 (355)
Q Consensus 171 ~~~~~~~~~~~~~~~----------------------------------~~~la~~~~~~g~~~~A~~~~~~~~~~---- 212 (355)
..++++..-..+.-+ ...++.........++....+++....
T Consensus 1199 ~ad~vi~~id~~~l~~~~g~k~d~~~~a~k~k~~m~~~k~~l~~al~~k~~ala~~~~~~~~~~~~~~~~~~~~~el~k~ 1278 (1354)
T 3lxu_X 1199 LADKVIQETDSEALLSYYGLKNDTRADAAKIKTNMDKQKNTLIEALSKKGIAVAKLAVLDDCIKDSLAEINELYTEIIKF 1278 (1354)
T ss_dssp HHHHTTCHHHHTTTSTTCCSTHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSGGGHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhh
Q ss_pred -CCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 040440 213 -DPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD 291 (355)
Q Consensus 213 -~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 291 (355)
+..+..+......-....++ |..|++++.++..+....+.+..++.++..+|--.-+.-.=+-+.-.+|..
T Consensus 1279 ~d~~d~k~~~~~~~~~~~~~~--------~g~~~k~l~k~~~~k~~~~~~~~~~~~~~~l~w~h~~~~~~~~~~~~~p~~ 1350 (1354)
T 3lxu_X 1279 VDANDSKAIQFALWHAYAHGH--------YGRMYKYVVKLIEEKRTRDHFVELAAINGALGHEHIRTVINRMMITAFPSS 1350 (1354)
T ss_dssp SCTTSTTTHHHHHHHHHHHTC--------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHSCSS
T ss_pred cccCCceeehhHHHHHHHHHH--------HHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCHHHHHHHHhhhhhhCccc
No 350
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=27.14 E-value=1.3e+02 Score=19.30 Aligned_cols=18 Identities=11% Similarity=0.067 Sum_probs=11.9
Q ss_pred HHccCHHHHHHHHHHHHH
Q 040440 160 IKSQKLVEAVDVIDRLIE 177 (355)
Q Consensus 160 ~~~g~~~~A~~~~~~~~~ 177 (355)
-..|+|++|+.+|..+++
T Consensus 27 D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 27 DSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 456777777777766654
No 351
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=25.51 E-value=28 Score=30.76 Aligned_cols=31 Identities=6% Similarity=-0.107 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIEL 178 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 178 (355)
...++..++.+|+..|+|++|+...++++..
T Consensus 190 k~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 190 TDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3457788899999999999999999988864
No 352
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=25.36 E-value=2.6e+02 Score=22.24 Aligned_cols=157 Identities=11% Similarity=0.039 Sum_probs=77.9
Q ss_pred CCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHcCC--CchHHHHHHHHHHHH-----cCC-
Q 040440 129 VSYEEKEKEIEQHLAANPN-DIEALQTLMEVRIK-SQKLVEAVDVIDRLIELEP--NEFEWQLLKAQVQSY-----AGE- 198 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~-----~g~- 198 (355)
.+|++.....+++.+.++. +.+-.+.+..+|-. .|....+...+....+... .+. -...+..-|.. +.+
T Consensus 18 eRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissieqke~~~~~~-~~~~~i~~yr~kie~EL~~i 96 (248)
T 3uzd_A 18 ERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNE-KKIEMVRAYREKIEKELEAV 96 (248)
T ss_dssp TCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC-C-HHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhccCCH-HHHHHHHHHHHHHHHHHHHH
Confidence 3999999999999987765 45556666665532 3444455555543332211 010 01111111110 000
Q ss_pred HHHHHHHHHHHHhhCCCCH----HH--HHHHHHHHh-----ccCch----HHHHHHHHHHHHHHHHh--hccCCchHHHH
Q 040440 199 SEAAIKGFEEILRKDPLRV----EA--YHGLVMAYD-----GSDKK----LNEVEKRIEKAMERCKK--EKKKSDLRDFK 261 (355)
Q Consensus 199 ~~~A~~~~~~~~~~~p~~~----~~--~~~l~~~~~-----~~~~~----~~~a~~~~~~Al~~~~~--~~~~~~~~~~~ 261 (355)
-.+.+.++++.+--...+. .+ +...|..|. ..|+. .+.+...|++|.++... ...+|....+.
T Consensus 97 C~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a~~aY~~A~~iA~~~L~pthPirLGLa 176 (248)
T 3uzd_A 97 CQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLA 176 (248)
T ss_dssp HHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHH
Confidence 0122222222221111111 12 123343332 12221 34567788888888765 23345445555
Q ss_pred HHHHHHHHH-ccCHHHHHHHHHHHHH
Q 040440 262 LLIAQIKVM-ESKHSEALRVYEELVK 286 (355)
Q Consensus 262 ~~la~~~~~-~g~~~~A~~~~~~~l~ 286 (355)
.+.+.+|+. .++.++|....++++.
T Consensus 177 LNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 177 LNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666555 7999999888887764
No 353
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=24.24 E-value=3.5e+02 Score=23.50 Aligned_cols=84 Identities=13% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHH--HHHHHHHHHH-----hCCCChHHHHHHHHHHHHcCC
Q 040440 235 NEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSE--ALRVYEELVK-----EEPRDFRPYLCQGIIYTLLRK 307 (355)
Q Consensus 235 ~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~--A~~~~~~~l~-----~~~~~~~~~~~l~~~~~~~g~ 307 (355)
.+....-++-+-++-...-....+-.+.+||++....-.... ++..|++++. ........|..+|-.+++.++
T Consensus 239 ~el~~lQq~LLWlLyd~Ghl~~YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~ 318 (489)
T 4gq4_A 239 LELLQLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRN 318 (489)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhccchhhcchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhh
Q ss_pred HHHHHHHHHHH
Q 040440 308 KDEAEKQFEKF 318 (355)
Q Consensus 308 ~~~A~~~~~~~ 318 (355)
+.+|+..+..+
T Consensus 319 ~~eAl~~wa~a 329 (489)
T 4gq4_A 319 VREALQAWADT 329 (489)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhhh
No 354
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=23.68 E-value=3.2e+02 Score=22.83 Aligned_cols=160 Identities=11% Similarity=0.010 Sum_probs=87.3
Q ss_pred hccCCH---HHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----CCCchHHHHHHHH
Q 040440 126 REDVSY---EEKEKEIEQHLAAN------PNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL-----EPNEFEWQLLKAQ 191 (355)
Q Consensus 126 ~~~~~~---~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~la~ 191 (355)
.+.++| =+|-+.++....+. .+-.+.++.-+..+.+.|++..|.++..-+++. .+-+.+..-.+..
T Consensus 23 I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 23 IAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 444577 66666666654421 122445666677777888888777666444433 2223345555555
Q ss_pred HHHHcCCHH-HHHHHHHHHHhh-------CCCCHHHHHHHHHHHhccCchHHHHHHHH----H----HHHHHHHh--hcc
Q 040440 192 VQSYAGESE-AAIKGFEEILRK-------DPLRVEAYHGLVMAYDGSDKKLNEVEKRI----E----KAMERCKK--EKK 253 (355)
Q Consensus 192 ~~~~~g~~~-~A~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~~~~~~~a~~~~----~----~Al~~~~~--~~~ 253 (355)
++.....-+ +=..+.+++++. .-.+++.+..+|..|...++ +.+|..++ + .-.+.+-+ ...
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~-~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGE-FEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTC-HHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 555444311 112333444432 23578888888998888877 55554332 0 11111111 122
Q ss_pred CCchHHHHHHHH-HHHHHccCHHHHHHHHHHHHH
Q 040440 254 KSDLRDFKLLIA-QIKVMESKHSEALRVYEELVK 286 (355)
Q Consensus 254 ~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~~l~ 286 (355)
.+...+.+...+ ..|...++...|...++...+
T Consensus 182 ~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 182 ESHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 244555555544 457788999999887666553
No 355
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=23.40 E-value=3.4e+02 Score=24.13 Aligned_cols=17 Identities=12% Similarity=0.118 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhhc
Q 040440 236 EVEKRIEKAMERCKKEK 252 (355)
Q Consensus 236 ~a~~~~~~Al~~~~~~~ 252 (355)
.|...|++|++.+++..
T Consensus 450 kAi~~Y~~Ai~~L~k~~ 466 (526)
T 2wb7_A 450 GAIDEYKAAINDLQKAA 466 (526)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 34445888888888854
No 356
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=23.20 E-value=1.7e+02 Score=25.83 Aligned_cols=30 Identities=17% Similarity=0.128 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Q 040440 149 IEALQTLMEVRIKSQKLVEAVDVIDRLIEL 178 (355)
Q Consensus 149 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 178 (355)
..++..+|.+|+..|+|++|+...++++..
T Consensus 197 ~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 197 LSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 457788999999999999999999999864
No 357
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=23.02 E-value=2.9e+02 Score=22.09 Aligned_cols=156 Identities=10% Similarity=-0.018 Sum_probs=80.0
Q ss_pred CCHHHHHHHHHHHHHcC--CC-CHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHcCC--CchHHHHHHHHHHHHcCCHHHH
Q 040440 129 VSYEEKEKEIEQHLAAN--PN-DIEALQTLMEVRIK-SQKLVEAVDVIDRLIELEP--NEFEWQLLKAQVQSYAGESEAA 202 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~--p~-~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A 202 (355)
.+|++.+...+++.+.+ ++ +.+-.+.+..+|-. .|....+...+....+... .+ .....+..-|.. .--.+-
T Consensus 22 eRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRiissieqke~~k~~-~~~~~~i~~yr~-kie~EL 99 (260)
T 1o9d_A 22 ERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGN-EEHVNSIREYRS-KIENEL 99 (260)
T ss_dssp TCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHH-HHHHHH
T ss_pred cCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhccCc-HHHHHHHHHHHH-HHHHHH
Confidence 49999999999999977 54 55555666555532 3444445555544332211 11 122222221211 111122
Q ss_pred HHHHHHHHhh-------CCCCHH--HH--HHHHHHHh-----ccCch----HHHHHHHHHHHHHHHHh--hccCCchHHH
Q 040440 203 IKGFEEILRK-------DPLRVE--AY--HGLVMAYD-----GSDKK----LNEVEKRIEKAMERCKK--EKKKSDLRDF 260 (355)
Q Consensus 203 ~~~~~~~~~~-------~p~~~~--~~--~~l~~~~~-----~~~~~----~~~a~~~~~~Al~~~~~--~~~~~~~~~~ 260 (355)
...++.++.+ ...+.+ ++ ...|..|. ..|+. .+.+...|++|.++.+. ...+|....+
T Consensus 100 ~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirLGL 179 (260)
T 1o9d_A 100 SKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIATTELAPTHPIRLGL 179 (260)
T ss_dssp HHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHH
Confidence 2222222221 122221 11 12233322 22322 34567788888888765 2334545555
Q ss_pred HHHHHHHHHH-ccCHHHHHHHHHHHHH
Q 040440 261 KLLIAQIKVM-ESKHSEALRVYEELVK 286 (355)
Q Consensus 261 ~~~la~~~~~-~g~~~~A~~~~~~~l~ 286 (355)
..+.+.+|+. .++.++|....++++.
T Consensus 180 aLNfSVFyYEiln~~~~Ac~lAk~Afd 206 (260)
T 1o9d_A 180 ALNFSVFYYEILNSPDRACNLAKQAFD 206 (260)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6666666665 7999999988888764
No 358
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=21.81 E-value=1.7e+02 Score=20.40 Aligned_cols=57 Identities=16% Similarity=0.063 Sum_probs=35.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 265 AQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 265 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
..+|+..++.+..++.++.+.+.-...+.+.........--.+..+|.+++++....
T Consensus 47 Srlyf~~~n~~~m~~~L~pLh~~l~~~PeT~~E~sF~~~fG~~L~~A~~~~~~y~~t 103 (126)
T 2npu_A 47 SRLYFGERNVKGMFEVLEPLHAMMERGPQTLKETSFNQAYGRDLMEAQEWCRKYMKS 103 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcccCHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 456778899999998887773321112333344444444445677888888887643
No 359
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=21.23 E-value=1.5e+02 Score=19.18 Aligned_cols=14 Identities=14% Similarity=0.366 Sum_probs=7.0
Q ss_pred cCHHHHHHHHHHHH
Q 040440 272 SKHSEALRVYEELV 285 (355)
Q Consensus 272 g~~~~A~~~~~~~l 285 (355)
|+.++|+.+|++.+
T Consensus 33 G~k~~A~~~YkkGi 46 (89)
T 3eab_A 33 GQKEQAVEWYKKGI 46 (89)
T ss_dssp SSGGGSHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 44555555555443
No 360
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=21.19 E-value=1.3e+02 Score=20.18 Aligned_cols=28 Identities=11% Similarity=-0.051 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040440 292 FRPYLCQGIIYTLLRKKDEAEKQFEKFR 319 (355)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l 319 (355)
......-+.-..+.|+|++|.+.++++-
T Consensus 20 ArS~~~eAl~~Ak~g~fe~A~~~l~eA~ 47 (105)
T 2e2a_A 20 ARSKLLEALKAAENGDFAKADSLVVEAG 47 (105)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3344444555556666666666666553
No 361
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=21.14 E-value=1.3e+02 Score=20.07 Aligned_cols=27 Identities=7% Similarity=-0.017 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 292 FRPYLCQGIIYTLLRKKDEAEKQFEKF 318 (355)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 318 (355)
......-+.-..+.|+|++|.+.++++
T Consensus 18 Ars~~~eAl~~Ak~g~fe~A~~~l~eA 44 (103)
T 1wcr_A 18 ARSLAYAALKQAKQGDFAAAKAMMDQS 44 (103)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334444455555666666666666655
No 362
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=21.08 E-value=1.8e+02 Score=18.80 Aligned_cols=25 Identities=0% Similarity=0.020 Sum_probs=11.2
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQT 154 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~ 154 (355)
.+++|+.+++++-....++++.|..
T Consensus 9 ~~~~A~~YvnkVK~rF~~~p~~Y~~ 33 (89)
T 1g1e_B 9 EFNHAINYVNKIKNRFQGQPDIYKA 33 (89)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccChHHHHH
Confidence 3444555554444444444444433
No 363
>3jys_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 2.00A {Bacteroides vulgatus atcc 8482}
Probab=20.94 E-value=93 Score=27.76 Aligned_cols=51 Identities=14% Similarity=0.184 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhh---ccCCchHHHHHHHHHHHH------HccCHHHHHHHHHHHHH
Q 040440 236 EVEKRIEKAMERCKKE---KKKSDLRDFKLLIAQIKV------MESKHSEALRVYEELVK 286 (355)
Q Consensus 236 ~a~~~~~~Al~~~~~~---~~~~~~~~~~~~la~~~~------~~g~~~~A~~~~~~~l~ 286 (355)
..+..+++|+..+... ........++..++++|+ ..++|++|+...++++.
T Consensus 163 ~I~~DL~~A~~~Lp~~~~~~gr~tk~aA~allarvyL~~~~y~~~~~~~~A~~~a~~vi~ 222 (499)
T 3jys_A 163 WIEAELNEIKPNLPSPRSEYGVADQAVASALLARMYLNAEIYTGKARYTECINACNEVIK 222 (499)
T ss_dssp HHHHHHHHHGGGSCCTTSSTTSCCHHHHHHHHHHHHHTHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCCCCcCHHHHHHHHHHHHHhhhhccChhHHHHHHHHHHHHHh
Confidence 3444566666554331 123444556777888877 56899999999999985
No 364
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=26.26 E-value=21 Score=33.37 Aligned_cols=44 Identities=20% Similarity=0.194 Sum_probs=26.1
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCC
Q 040440 155 LMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGE 198 (355)
Q Consensus 155 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 198 (355)
.|...+..|+|.-|.++.+.++..+|++..+...++.+|.++|.
T Consensus 467 ~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~ 510 (668)
T 2yhe_A 467 QMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGY 510 (668)
Confidence 34444555666666666666666666666666666665555553
No 365
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=20.47 E-value=2.5e+02 Score=25.08 Aligned_cols=30 Identities=10% Similarity=0.128 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Q 040440 149 IEALQTLMEVRIKSQKLVEAVDVIDRLIEL 178 (355)
Q Consensus 149 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 178 (355)
..++..++.+|+..++|++|+...++++..
T Consensus 182 ~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 182 GAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457888999999999999999999999864
No 366
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=20.46 E-value=2.9e+02 Score=22.26 Aligned_cols=53 Identities=11% Similarity=0.092 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHh-h---ccCCchHHHHHHHHHHHH-HccCHHHHHHHHHHHHHh
Q 040440 235 NEVEKRIEKAMERCKK-E---KKKSDLRDFKLLIAQIKV-MESKHSEALRVYEELVKE 287 (355)
Q Consensus 235 ~~a~~~~~~Al~~~~~-~---~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~ 287 (355)
+.+...|++|.++.+. + ..+|....+..+...+|+ -.++.++|....++++..
T Consensus 169 e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 169 KQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3445666666666644 2 122333333344444444 356677776666666554
No 367
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=20.01 E-value=4e+02 Score=23.11 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHH
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRL 175 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~ 175 (355)
..+..|+..+...|+|.+|..++-.+
T Consensus 12 ~wl~~La~~h~~~~n~~EAa~cl~~~ 37 (428)
T 2wm9_A 12 TWLDSMARIHVKNGDLSEAAMCYVHV 37 (428)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34566777788888888877777543
Done!