Query 040442
Match_columns 522
No_of_seqs 193 out of 693
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 13:30:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040442.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040442hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vt8_A HPI31, PI31, proteasome 99.4 1.5E-13 5E-18 127.0 8.8 139 200-360 5-148 (153)
2 1fs1_A SKP2 F-BOX, cyclin A/CD 99.0 1.5E-10 5.3E-15 87.6 3.3 47 369-415 6-52 (53)
3 3l2o_B F-box only protein 4; s 99.0 1.3E-10 4.3E-15 118.2 3.3 55 369-423 2-56 (312)
4 2pjh_A Protein NPL4, nuclear p 99.0 3.5E-10 1.2E-14 93.7 4.9 72 1-75 5-78 (80)
5 2e31_A FBS1, F-box only protei 98.9 1.1E-09 3.8E-14 111.2 7.1 72 370-441 49-123 (297)
6 2ovr_B FBW7, F-BOX/WD repeat p 98.8 2.1E-09 7.3E-14 109.1 6.4 74 370-443 17-100 (445)
7 1wf9_A NPL4 family protein; be 98.8 7.2E-09 2.5E-13 89.8 6.0 76 1-78 8-95 (107)
8 1p22_A F-BOX/WD-repeat protein 98.7 4.9E-09 1.7E-13 106.6 2.7 52 370-421 9-64 (435)
9 3v7d_B Cell division control p 98.5 6.1E-08 2.1E-12 98.2 5.8 51 370-420 13-64 (464)
10 2bwf_A Ubiquitin-like protein 98.5 1.9E-07 6.6E-12 74.4 6.9 72 1-78 5-76 (77)
11 3a9j_A Ubiquitin; protein comp 98.5 2.8E-07 9.4E-12 72.9 7.6 73 1-78 1-73 (76)
12 1ndd_A NEDD8, protein (ubiquit 98.5 3.4E-07 1.2E-11 72.4 7.5 72 1-77 1-72 (76)
13 1v5o_A 1700011N24RIK protein; 98.5 1.7E-07 5.7E-12 80.3 6.0 76 1-79 8-86 (102)
14 2kzr_A Ubiquitin thioesterase 98.5 2.4E-07 8.2E-12 76.8 6.8 75 1-77 1-77 (86)
15 2dzi_A Ubiquitin-like protein 98.4 5.4E-07 1.8E-11 72.5 6.8 73 1-78 8-80 (81)
16 1uel_A HHR23B, UV excision rep 98.4 1.2E-06 4.2E-11 73.7 9.1 73 1-78 1-76 (95)
17 2faz_A Ubiquitin-like containi 98.4 5.9E-07 2E-11 72.1 6.9 74 1-78 3-77 (78)
18 1wy8_A NP95-like ring finger p 98.4 5.8E-07 2E-11 74.1 6.8 74 1-78 8-82 (89)
19 2kk8_A Uncharacterized protein 98.4 5.2E-07 1.8E-11 74.8 6.1 74 1-78 11-84 (84)
20 1yx5_B Ubiquitin; proteasome, 98.3 1.3E-06 4.3E-11 73.8 7.8 73 1-78 1-73 (98)
21 3n3k_B Ubiquitin; hydrolase, p 98.3 1.2E-06 4E-11 71.2 7.2 73 1-78 4-76 (85)
22 3mtn_B UBA80, ubcep1, ubiquiti 98.3 9.6E-07 3.3E-11 71.5 6.4 73 1-78 4-76 (85)
23 1v5t_A 8430435I17RIK protein; 98.3 1.9E-06 6.4E-11 72.1 7.6 73 1-79 8-84 (90)
24 3m62_B UV excision repair prot 98.3 1.3E-06 4.6E-11 75.3 6.8 73 1-78 2-74 (106)
25 1wx7_A Ubiquilin 3; ubiquitin- 98.3 1.3E-06 4.3E-11 75.1 6.5 72 1-78 18-89 (106)
26 3v6c_B Ubiquitin; structural g 98.3 1.3E-06 4.6E-11 72.6 6.4 72 1-77 18-89 (91)
27 2wyq_A HHR23A, UV excision rep 98.3 1.8E-06 6E-11 70.3 7.0 73 1-78 6-81 (85)
28 1wh3_A 59 kDa 2'-5'-oligoadeny 98.2 1.7E-06 5.8E-11 70.8 6.3 73 1-78 8-80 (87)
29 1wia_A Hypothetical ubiquitin- 98.2 2.2E-06 7.4E-11 71.9 6.8 71 1-78 8-78 (95)
30 4fbj_B NEDD8; effector-HOST ta 98.2 2.3E-06 7.7E-11 71.1 6.7 73 1-78 1-73 (88)
31 3dbh_I NEDD8; cell cycle, acti 98.2 1.7E-06 5.8E-11 70.7 5.8 72 1-77 13-84 (88)
32 3k9o_B Ubiquitin, UBB+1; E2-25 98.2 3.4E-06 1.2E-10 70.4 7.6 73 1-78 2-74 (96)
33 2hj8_A Interferon-induced 17 k 98.2 2E-06 6.8E-11 71.3 6.0 73 1-78 5-77 (88)
34 3phx_B Ubiquitin-like protein 98.2 3.1E-06 1.1E-10 68.2 6.7 72 1-77 5-76 (79)
35 4hcn_B Polyubiquitin, ubiquiti 98.2 3.2E-06 1.1E-10 71.5 7.1 72 1-77 23-94 (98)
36 2klc_A Ubiquilin-1; ubiquitin- 98.2 2.9E-06 9.8E-11 72.6 6.7 72 1-78 26-97 (101)
37 1ttn_A DC-UBP, dendritic cell- 98.1 3E-06 1E-10 72.9 6.4 73 1-78 24-96 (106)
38 2l7r_A Ubiquitin-like protein 98.1 3.2E-06 1.1E-10 71.1 6.4 71 1-78 20-90 (93)
39 1wx8_A Riken cDNA 4931431F19; 98.1 1.6E-06 5.4E-11 72.8 4.3 72 1-78 18-89 (96)
40 1yqb_A Ubiquilin 3; structural 98.1 3E-06 1E-10 72.4 5.9 72 1-78 23-94 (100)
41 3b1l_X E3 ubiquitin-protein li 97.4 3.6E-07 1.2E-11 72.9 0.0 73 1-78 1-73 (76)
42 1wgg_A Ubiquitin carboxyl-term 98.1 2.5E-06 8.6E-11 72.4 5.2 73 1-80 8-81 (96)
43 1wxv_A BAG-family molecular ch 98.1 4.6E-06 1.6E-10 69.5 6.6 73 1-78 8-85 (92)
44 1j8c_A Ubiquitin-like protein 98.1 4.1E-06 1.4E-10 74.6 6.3 72 1-78 33-104 (125)
45 1sif_A Ubiquitin; hydrophobic 98.1 7.1E-06 2.4E-10 68.1 7.3 73 1-78 10-82 (88)
46 4dwf_A HLA-B-associated transc 98.1 5E-06 1.7E-10 68.7 6.3 72 1-78 6-77 (90)
47 2ojr_A Ubiquitin; lanthide-bin 98.1 5.4E-06 1.9E-10 71.8 6.8 72 1-77 36-107 (111)
48 1v86_A DNA segment, CHR 7, way 98.0 4.4E-06 1.5E-10 70.6 5.2 71 1-78 18-88 (95)
49 2kd0_A LRR repeats and ubiquit 98.0 8.2E-06 2.8E-10 67.5 6.6 71 2-78 14-84 (85)
50 2kan_A Uncharacterized protein 98.0 6.3E-06 2.2E-10 69.6 5.9 72 1-78 16-88 (94)
51 1we6_A Splicing factor, putati 98.0 8.8E-06 3E-10 70.4 7.0 74 1-78 28-104 (111)
52 1v2y_A 3300001G02RIK protein; 98.0 2.4E-06 8.4E-11 74.3 2.9 73 1-77 8-95 (105)
53 3m63_B Ubiquitin domain-contai 98.0 9.3E-06 3.2E-10 69.5 6.5 71 1-77 29-99 (101)
54 2uyz_B Small ubiquitin-related 98.0 6E-06 2E-10 66.5 4.9 72 1-77 4-75 (79)
55 1x1m_A Ubiquitin-like protein 98.0 2.2E-05 7.4E-10 67.7 8.2 74 1-78 13-100 (107)
56 3vdz_A Ubiquitin-40S ribosomal 97.9 1.3E-05 4.4E-10 69.6 6.2 72 1-77 36-107 (111)
57 1wgd_A Homocysteine-responsive 97.9 2.6E-05 9E-10 65.1 7.0 74 1-78 8-86 (93)
58 3b08_A Polyubiquitin-C, ubiqui 97.9 3.2E-05 1.1E-09 68.9 7.8 73 1-78 1-73 (152)
59 4eew_A Large proline-rich prot 97.9 1.9E-05 6.6E-10 64.8 5.9 70 1-76 18-87 (88)
60 1wyw_B Ubiquitin-like protein 97.8 2.4E-05 8.3E-10 66.1 5.2 72 1-77 22-93 (97)
61 3l0w_B Monoubiquitinated proli 97.7 6.9E-05 2.4E-09 69.9 8.1 73 1-78 1-73 (169)
62 1v6e_A Cytoskeleton-associated 97.7 5.9E-05 2E-09 63.5 6.1 71 2-76 9-86 (95)
63 2fnj_B Transcription elongatio 97.7 3.9E-05 1.3E-09 68.1 5.1 71 1-77 3-80 (118)
64 3rt3_B Ubiquitin-like protein 97.7 8.9E-05 3E-09 67.2 7.7 72 1-77 3-76 (159)
65 2kdi_A Ubiquitin, vacuolar pro 97.6 0.0001 3.6E-09 64.3 7.5 72 2-78 11-82 (114)
66 3u5e_m 60S ribosomal protein L 97.6 7.3E-06 2.5E-10 72.8 0.0 73 1-78 1-73 (128)
67 1we7_A SF3A1 protein; structur 97.6 8.7E-05 3E-09 64.6 6.1 64 11-78 45-108 (115)
68 3b08_A Polyubiquitin-C, ubiqui 97.6 0.00011 3.9E-09 65.2 6.8 73 1-78 77-149 (152)
69 3u30_A Ubiquitin, linear DI-ub 97.5 9.9E-05 3.4E-09 68.1 6.3 73 1-78 21-93 (172)
70 1wjn_A Tubulin-folding protein 97.5 0.00017 5.7E-09 60.9 7.0 74 2-77 11-92 (97)
71 4dbg_A Ranbp-type and C3HC4-ty 97.5 0.00014 4.8E-09 63.3 6.3 74 1-78 25-100 (105)
72 2kdb_A Homocysteine-responsive 97.5 8.7E-05 3E-09 63.6 4.6 71 1-75 24-99 (99)
73 1wgh_A Ubiquitin-like 3, HCG-1 97.5 0.00022 7.6E-09 63.0 7.2 73 1-78 17-99 (116)
74 3u5c_f 40S ribosomal protein S 97.4 2E-05 6.8E-10 72.7 0.0 73 1-78 1-73 (152)
75 1uh6_A Ubiquitin-like 5; beta- 97.4 0.00012 4E-09 63.3 4.8 70 1-75 29-98 (100)
76 3q3f_A Ribonuclease/ubiquitin 97.4 0.00015 5E-09 69.2 5.8 73 1-78 106-178 (189)
77 2ast_B S-phase kinase-associat 97.4 3.1E-05 1.1E-09 76.0 1.2 48 369-416 6-53 (336)
78 2daf_A FLJ35834 protein; hypot 97.4 0.00018 6.1E-09 63.9 5.8 67 7-77 22-88 (118)
79 2kj6_A Tubulin folding cofacto 97.4 0.00031 1.1E-08 60.0 7.1 73 2-76 16-94 (97)
80 4a20_A Ubiquitin-like protein 97.4 0.00026 8.8E-09 60.6 6.6 74 1-78 20-96 (98)
81 1t0y_A Tubulin folding cofacto 97.4 0.00025 8.6E-09 62.6 6.7 73 1-77 7-86 (122)
82 2gow_A HCG-1 protein, ubiquiti 97.4 0.00019 6.4E-09 64.2 5.7 73 1-78 18-100 (125)
83 2dzm_A FAS-associated factor 1 97.4 0.00017 5.7E-09 62.2 4.9 72 2-79 11-83 (100)
84 2dzj_A Synaptic glycoprotein S 97.3 0.0003 1E-08 58.8 6.0 72 1-74 11-85 (88)
85 1oqy_A HHR23A, UV excision rep 97.3 0.00077 2.6E-08 70.3 10.3 73 1-78 8-84 (368)
86 3rt3_B Ubiquitin-like protein 97.3 0.00036 1.2E-08 63.2 6.7 73 1-78 82-154 (159)
87 3ai5_A Yeast enhanced green fl 97.3 0.00029 1E-08 71.8 6.3 72 1-77 234-305 (307)
88 4hfx_A Transcription elongatio 97.2 9E-05 3.1E-09 63.7 1.9 67 372-441 10-76 (97)
89 2kjr_A CG11242; UBL, ubiquitin 97.2 0.00038 1.3E-08 59.1 5.7 72 2-75 17-93 (95)
90 2lxa_A Ubiquitin-like protein 97.2 0.00083 2.9E-08 56.2 7.0 75 1-79 2-79 (87)
91 1se9_A Ubiquitin family; ubiqu 97.0 0.00094 3.2E-08 59.9 6.3 74 1-78 17-103 (126)
92 1wju_A NEDD8 ultimate buster-1 97.0 0.00082 2.8E-08 58.0 5.6 62 11-76 29-90 (100)
93 3u30_A Ubiquitin, linear DI-ub 97.0 0.00084 2.9E-08 61.8 5.8 72 1-77 97-168 (172)
94 3a4r_A Nfatc2-interacting prot 96.9 0.0016 5.4E-08 53.2 6.0 71 1-75 8-78 (79)
95 4ajy_B Transcription elongatio 96.9 0.0013 4.5E-08 58.4 5.8 69 3-77 5-80 (118)
96 4b6w_A Tubulin-specific chaper 96.6 0.0063 2.2E-07 50.6 7.5 74 2-77 4-83 (86)
97 2io1_B Small ubiquitin-related 96.6 0.003 1E-07 53.4 5.6 73 1-78 8-80 (94)
98 1wm3_A Ubiquitin-like protein 96.5 0.0045 1.5E-07 49.4 6.0 71 1-76 2-72 (72)
99 2io0_B Small ubiquitin-related 96.2 0.0072 2.5E-07 50.9 5.9 73 1-78 6-78 (91)
100 2d07_B Ubiquitin-like protein 96.1 0.0068 2.3E-07 51.1 5.5 73 1-78 18-90 (93)
101 3plu_A Ubiquitin-like modifier 96.1 0.0069 2.4E-07 51.6 5.5 62 10-75 30-91 (93)
102 3shq_A UBLCP1; phosphatase, hy 96.1 0.0054 1.8E-07 62.7 5.4 73 1-79 6-81 (320)
103 2p1m_B Transport inhibitor res 95.9 0.0015 5.2E-08 68.8 0.8 36 370-405 4-40 (594)
104 1wz0_A Ubiquitin-like protein 95.7 0.014 4.7E-07 50.4 5.8 73 1-78 25-97 (104)
105 2bps_A YUKD protein; ubiquitin 95.7 0.0099 3.4E-07 49.4 4.4 63 10-74 15-80 (81)
106 2eke_C Ubiquitin-like protein 95.5 0.016 5.5E-07 50.3 5.3 72 1-78 32-103 (106)
107 2k8h_A Small ubiquitin protein 95.2 0.023 7.9E-07 49.6 5.4 73 1-78 27-99 (110)
108 3qx1_A FAS-associated factor 1 94.9 0.045 1.5E-06 44.9 6.1 71 2-75 9-81 (84)
109 3goe_A DNA repair protein RAD6 94.7 0.074 2.5E-06 44.1 6.7 69 3-77 12-82 (82)
110 2dzk_A UBX domain-containing p 94.5 0.084 2.9E-06 45.7 7.0 75 2-77 15-90 (109)
111 3ogk_B Coronatine-insensitive 93.9 0.016 5.4E-07 61.1 1.3 33 373-405 14-47 (592)
112 3kyd_D Small ubiquitin-related 93.1 0.14 5E-06 45.0 6.0 72 2-78 42-113 (115)
113 2xzm_9 RPS31E; ribosome, trans 93.1 0.017 5.8E-07 55.1 0.0 68 1-78 1-68 (189)
114 1wj4_A KIAA0794 protein; UBX d 88.5 0.63 2.1E-05 41.1 5.6 72 2-76 45-118 (124)
115 2jxx_A Nfatc2-interacting prot 87.9 0.73 2.5E-05 39.3 5.4 70 2-75 27-96 (97)
116 3pge_A SUMO-modified prolifera 87.8 0.69 2.4E-05 44.3 5.8 72 1-78 30-101 (200)
117 3rpf_C Molybdopterin convertin 87.8 1 3.6E-05 35.6 6.0 65 1-75 1-68 (74)
118 1s3s_G P47 protein; AAA ATPase 86.3 1.1 3.8E-05 39.6 5.9 68 1-71 53-122 (127)
119 3tix_A Ubiquitin-like protein 85.4 0.73 2.5E-05 44.3 4.4 72 2-79 59-130 (207)
120 1oey_A P67-PHOX, neutrophil cy 84.9 0.58 2E-05 39.0 3.1 43 1-46 6-48 (83)
121 2cr5_A Reproduction 8; UBX dom 84.7 1.6 5.6E-05 37.4 6.0 72 2-77 25-98 (109)
122 2kc2_A Talin-1, F1; FERM, adhe 82.8 1.4 4.6E-05 39.5 4.8 73 2-75 13-120 (128)
123 2l32_A Small archaeal modifier 82.1 1.7 5.8E-05 34.9 4.8 44 1-49 1-44 (74)
124 1vjk_A Molybdopterin convertin 77.6 5.8 0.0002 32.9 6.9 66 1-75 10-92 (98)
125 3v7o_A Minor nucleoprotein VP3 74.3 0.64 2.2E-05 45.2 0.0 72 1-78 22-93 (227)
126 3dwg_C 9.5 kDa culture filtrat 71.5 6.1 0.00021 32.3 5.4 69 1-75 1-87 (93)
127 4a6q_A Histone deacetylase com 69.7 5.1 0.00017 36.5 4.8 56 20-78 62-139 (143)
128 1y8x_B Ubiquitin-activating en 66.1 2.4 8.3E-05 36.2 1.8 64 12-75 5-82 (98)
129 1ryj_A Unknown; beta/alpha pro 65.2 9.8 0.00033 29.7 5.1 61 1-76 5-65 (70)
130 4da1_A Protein phosphatase 1K, 60.3 1.8 6.2E-05 44.5 0.0 71 3-79 33-103 (389)
131 4a3p_A Ubiquitin carboxyl-term 59.8 15 0.0005 35.0 6.2 63 14-77 142-208 (217)
132 3po0_A Small archaeal modifier 58.5 25 0.00084 28.2 6.6 55 12-75 18-83 (89)
133 2qjl_A URM1, ubiquitin-related 57.0 13 0.00043 30.9 4.7 70 1-75 2-93 (99)
134 3ix6_A TS, tsase, thymidylate 56.1 2.4 8.1E-05 44.1 0.0 71 2-78 23-93 (360)
135 2l52_A Methanosarcina acetivor 54.3 20 0.00069 29.8 5.5 69 1-75 4-93 (99)
136 3onh_A Ubiquitin-activating en 54.2 12 0.00041 33.4 4.2 56 22-78 20-80 (127)
137 2k9x_A Tburm1, uncharacterized 54.1 15 0.00051 31.7 4.7 70 1-75 5-96 (110)
138 1wgk_A Riken cDNA 2900073H19 p 53.9 29 0.00099 30.0 6.6 69 1-75 12-102 (114)
139 3jyu_A Ubiquitin carboxyl-term 52.7 29 0.00098 33.3 7.0 62 15-77 155-220 (231)
140 2g1e_A Hypothetical protein TA 51.7 44 0.0015 26.5 7.0 56 15-75 18-84 (90)
141 1rws_A Hypothetical protein PF 49.0 15 0.00052 29.1 3.7 60 1-75 12-71 (77)
142 3ivf_A Talin-1; FERM domain, c 46.6 31 0.0011 34.9 6.5 72 2-77 5-84 (371)
143 2l76_A Nfatc2-interacting prot 40.0 56 0.0019 27.7 6.0 71 2-78 23-93 (95)
144 1fm0_D Molybdopterin convertin 39.6 51 0.0017 25.6 5.5 54 12-75 17-75 (81)
145 1vd2_A Protein kinase C, IOTA 39.3 30 0.001 28.9 4.2 47 1-51 7-54 (89)
146 2i1s_A Hypothetical protein; m 38.3 52 0.0018 30.4 6.2 76 2-77 10-106 (188)
147 2nnz_A Hypothetical protein; b 37.6 31 0.001 31.5 4.3 66 1-75 30-101 (153)
148 2jx5_A GLUB(S27A); ubiquitin, 32.3 42 0.0014 26.0 3.6 31 1-33 1-31 (69)
149 3uf8_A Ubiquitin-like protein 30.6 65 0.0022 30.3 5.5 71 2-78 23-93 (209)
150 1f0z_A THis protein; ubiquitin 30.2 62 0.0021 24.6 4.4 55 10-75 6-60 (66)
151 2eel_A Cell death activator CI 26.3 1.5E+02 0.0051 24.9 6.3 67 4-79 13-80 (91)
152 1ef1_A Moesin; membrane, FERM 25.7 1.1E+02 0.0037 29.5 6.3 72 1-74 2-75 (294)
153 4gdk_A Ubiquitin-like protein 25.3 95 0.0032 25.8 5.0 57 12-72 20-81 (91)
154 1tyg_B YJBS; alpha beta barrel 23.1 1.4E+02 0.0047 24.5 5.5 55 10-75 26-81 (87)
155 2q5w_D Molybdopterin convertin 22.7 1E+02 0.0035 23.6 4.5 54 12-75 16-71 (77)
156 3rui_B Autophagy-related prote 22.4 69 0.0024 27.9 3.7 45 15-63 50-95 (118)
157 3m95_A Autophagy related prote 22.1 67 0.0023 28.4 3.6 47 14-64 55-102 (125)
158 3h9d_A ATG8, microtubule-assoc 22.0 55 0.0019 28.7 3.0 46 14-63 50-96 (119)
No 1
>2vt8_A HPI31, PI31, proteasome inhibitor PI31 subunit; polymorphism, hydrolase inhibitor; 2.6A {Homo sapiens}
Probab=99.45 E-value=1.5e-13 Score=127.05 Aligned_cols=139 Identities=12% Similarity=0.077 Sum_probs=107.9
Q ss_pred HHHHHHhHHhcCCCCccchHHHHHHHHHHhcCCcccCCCCC---cccccCCCcccccCC-ce-eEEeccCccccCCCCCc
Q 040442 200 FLRRVLGEKLGDRLGPHGLVIVAVHEILLESGFVGFDSESG---MRIDQFDLPDHLLLK-GV-SMSYTLPEILNDSSKDV 274 (522)
Q Consensus 200 ~L~~vl~~~~~~~~~~~~~LvvavHalmLESGFv~~~~~sg---~~~~~~~lp~~w~s~-g~-sl~YtlP~l~~~~~~~~ 274 (522)
-+.-+++....+..++.|+|++++|+.|++.||.+.+.+.. .....-.||++|.+. +. +++|+||+. . .
T Consensus 5 ~~e~l~~s~~~~i~~~~Dal~~~vH~~m~~~gfr~~g~g~~~~~~~~~se~LP~~WN~~~~~Y~f~Y~h~~~-~-~---- 78 (153)
T 2vt8_A 5 GLEVLFASAAPAITCRQDALVCFLHWEVVTHGYCGLGVGDQPGPNDKKSELLPAGWNNNKDLYVLRYEYKDG-S-R---- 78 (153)
T ss_dssp CHHHHHHHHGGGCCSHHHHHHHHHHHHHHTTTEEEEEESSSCCTTCCCBSSCCTTTTSCSSEEEEEEEESCC---C----
T ss_pred HHHHHHHhhhcccCCHHHHHHHHHHHHHHhcCCEeccCCCccCcccccccCCCHHHcCCCCeEEEEeccCCC-C-C----
Confidence 34566677667899999999999999999999999876421 012335699999985 66 999999994 3 3
Q ss_pred cceEEEEEEEcCCEEEEEEeecCCCCceEEEEecccCccccchhhhcccccccccccccccccchhHHHHHHHhhhcchh
Q 040442 275 TESVALKYQILGHFVNIYGSLAKGDSGMHKLCLNAYNFGPILSLVWANSDQNCSLLEYKSFDCGKEVFEFWKNVKDGLAL 354 (522)
Q Consensus 275 ~~~v~L~~~~lG~~vvV~g~l~~~~s~v~~l~Ld~~~yv~~l~~~~~~s~~~~~~~~~~~~~~~~~l~~Lw~~~Kd~La~ 354 (522)
.+.|+|..||+.++||+... +...|++++|+...||.-- . .+.++ ..|+++.+|-+.||++|..
T Consensus 79 --~~lLk~~~lg~~lvin~l~~-~~~~v~~l~i~~~~~V~~~-----~---~~~~~-----~~~~~l~~L~~~~k~~li~ 142 (153)
T 2vt8_A 79 --KLLVKAITVESSMILNVLEY-GSQQVADLTLNLDDYIDAE-----H---LGDFH-----RTYKNSEELRSRIVSGIIT 142 (153)
T ss_dssp --EEEEEEEEETTEEEEEEEET-TTTEEEEEEEEHHHHBCTT-----S---TTCHH-----HHBSCHHHHHHHHHHHTTS
T ss_pred --eEEEEEEEeCCEEEEEEEec-CCCCEEEEEEcHHHhhccc-----c---cCCHH-----HHhhhHHHHHHHHHHHhhh
Confidence 89999999999999999885 4567999999999999721 1 11111 5689999999999999999
Q ss_pred HHHHHH
Q 040442 355 PLLIDL 360 (522)
Q Consensus 355 plL~~l 360 (522)
|+....
T Consensus 143 ~l~~~~ 148 (153)
T 2vt8_A 143 PIHEQW 148 (153)
T ss_dssp CC----
T ss_pred hhcCCC
Confidence 987644
No 2
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.00 E-value=1.5e-10 Score=87.58 Aligned_cols=47 Identities=32% Similarity=0.574 Sum_probs=40.6
Q ss_pred CccccCCcHHHHHHHhccCCccchhhHHHhhHHHHHHhcCcHHHHHH
Q 040442 369 PACWTHLPTELKLKLLECLPGVDVAKMECVSRDMRYLASNNELWRQK 415 (522)
Q Consensus 369 pp~l~~LP~ELll~ILs~Ld~~dL~~ls~vCr~lr~LasDd~LWr~l 415 (522)
+..+..||.|++.+||++|+++|++++++|||.|+.++.++.|||.+
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l 52 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence 35689999999999999999999999999999999999999999975
No 3
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.99 E-value=1.3e-10 Score=118.19 Aligned_cols=55 Identities=18% Similarity=0.322 Sum_probs=51.7
Q ss_pred CccccCCcHHHHHHHhccCCccchhhHHHhhHHHHHHhcCcHHHHHHHHhhcCCC
Q 040442 369 PACWTHLPTELKLKLLECLPGVDVAKMECVSRDMRYLASNNELWRQKFVEEFGGP 423 (522)
Q Consensus 369 pp~l~~LP~ELll~ILs~Ld~~dL~~ls~vCr~lr~LasDd~LWr~lc~~df~~~ 423 (522)
|..|..||.||+++||+||+++||+++++|||.||.+++|+.|||.+|.+++..+
T Consensus 2 ~~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~W 56 (312)
T 3l2o_B 2 ASTLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSW 56 (312)
T ss_dssp CCHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGGC
T ss_pred cchhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCCC
Confidence 4568999999999999999999999999999999999999999999999987755
No 4
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.98 E-value=3.5e-10 Score=93.75 Aligned_cols=72 Identities=24% Similarity=0.341 Sum_probs=62.6
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCC--ceEEEecCCCCCCCCCCcccccccccccCCeEEEe
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPS--SLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYS 75 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~--~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~ 75 (522)
|.||||+ ...|.||+|++++|++||++.|.+.+.-+.+ ++.++.|.+++|.. +++.+|+++||..||+||+.
T Consensus 5 m~lRvrs--~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~-~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQS--PDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITA-SSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEEC--SSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSS-CCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEEC--CCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccC-CCCCCHHHcCCCCCCEEEEe
Confidence 8899999 8899999999999999999999999865433 68888888788865 48999999999999999974
No 5
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.91 E-value=1.1e-09 Score=111.16 Aligned_cols=72 Identities=21% Similarity=0.369 Sum_probs=60.0
Q ss_pred ccccCCcHHHHHHHhccCCccchh-hHHHhhHHHHHHhcCcHHHHHHHHhhcCCCC--CCCCCCChHHHHHHHHH
Q 040442 370 ACWTHLPTELKLKLLECLPGVDVA-KMECVSRDMRYLASNNELWRQKFVEEFGGPA--DAQGKTNWKERFVFNWE 441 (522)
Q Consensus 370 p~l~~LP~ELll~ILs~Ld~~dL~-~ls~vCr~lr~LasDd~LWr~lc~~df~~~~--~~~~~~~WK~lY~~~~~ 441 (522)
..+..||+||+++||++|++++|+ ++++|||.||.|++|+.|||.+|.++.-... ......+||.+|..+..
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~g~~~~~~~~~~~~~Wk~~y~~~~~ 123 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGSADEERDHWQQFYFLSKR 123 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHTTCCCC-----CCSCHHHHHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhccCcccccccCCCCCChhhhheheec
Confidence 357899999999999999999999 9999999999999999999999999832221 12256789999987643
No 6
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.85 E-value=2.1e-09 Score=109.06 Aligned_cols=74 Identities=28% Similarity=0.355 Sum_probs=62.0
Q ss_pred ccccCCcHHHHHHHhccCCccchhhHHHhhHHHHHHhcCcHHHHHHHHhhcCCCCC----------CCCCCChHHHHHHH
Q 040442 370 ACWTHLPTELKLKLLECLPGVDVAKMECVSRDMRYLASNNELWRQKFVEEFGGPAD----------AQGKTNWKERFVFN 439 (522)
Q Consensus 370 p~l~~LP~ELll~ILs~Ld~~dL~~ls~vCr~lr~LasDd~LWr~lc~~df~~~~~----------~~~~~~WK~lY~~~ 439 (522)
+.+..||.|++.+||+||+++||+++++|||.|+.++.|+.|||++|.+++..... ......||..|.++
T Consensus 17 d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~~~~~~ 96 (445)
T 2ovr_B 17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQ 96 (445)
T ss_dssp STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHHHH
T ss_pred ChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccccccccceecCCCccCCcHHHHHhhh
Confidence 56899999999999999999999999999999999999999999999876533210 11246799999988
Q ss_pred HHhh
Q 040442 440 WEYN 443 (522)
Q Consensus 440 ~~~~ 443 (522)
++.+
T Consensus 97 ~~~~ 100 (445)
T 2ovr_B 97 HRID 100 (445)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 7644
No 7
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.76 E-value=7.2e-09 Score=89.81 Aligned_cols=76 Identities=20% Similarity=0.313 Sum_probs=64.1
Q ss_pred CeeeeeecccccceeccCC-CCcchHHHHHHHhhhcCCCCCceEEEecCCC----------CCC-CCCCccccccccccc
Q 040442 1 MKLRLRSLENKETLRLEVP-SSCTLHELGETLSQLISSSPSSLRFSLNRKD----------ELH-ASSPPESLHSLGVTA 68 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp-~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd----------~L~-~~~~~~tL~slGIvS 68 (522)
|+||||+ ...+.+|+|. .++|+.|||+.|.+.+.-+.+..+|+++++- .|. ..+|+.||++|||..
T Consensus 8 M~irvrs--~~G~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~ 85 (107)
T 1wf9_A 8 TMLRVRS--RDGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAH 85 (107)
T ss_dssp EEEEEEC--SSCEEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCT
T ss_pred EEEEEEC--CCCCEEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCC
Confidence 8999999 5556689999 8889999999999998777888899999981 331 015899999999999
Q ss_pred CCeEEEecCC
Q 040442 69 GDLIFYSRDP 78 (522)
Q Consensus 69 GDLI~~~l~~ 78 (522)
||.||++...
T Consensus 86 G~~L~l~~~~ 95 (107)
T 1wf9_A 86 GSMVYLAYEG 95 (107)
T ss_dssp TCEEECCCSS
T ss_pred CCEEEEEeCC
Confidence 9999999875
No 8
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.68 E-value=4.9e-09 Score=106.55 Aligned_cols=52 Identities=19% Similarity=0.326 Sum_probs=49.1
Q ss_pred ccccCCcHH----HHHHHhccCCccchhhHHHhhHHHHHHhcCcHHHHHHHHhhcC
Q 040442 370 ACWTHLPTE----LKLKLLECLPGVDVAKMECVSRDMRYLASNNELWRQKFVEEFG 421 (522)
Q Consensus 370 p~l~~LP~E----Lll~ILs~Ld~~dL~~ls~vCr~lr~LasDd~LWr~lc~~df~ 421 (522)
+.+..||.| |+++||+|||++||+++++|||+|+.+++|+.|||++|.++|.
T Consensus 9 d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~ 64 (435)
T 1p22_A 9 DFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVR 64 (435)
T ss_dssp CHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred ChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcC
Confidence 457889999 9999999999999999999999999999999999999999864
No 9
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.53 E-value=6.1e-08 Score=98.21 Aligned_cols=51 Identities=25% Similarity=0.401 Sum_probs=47.6
Q ss_pred ccccCCcHHHHHHHhccCCccchhhHHHhhHHHHHHhcC-cHHHHHHHHhhc
Q 040442 370 ACWTHLPTELKLKLLECLPGVDVAKMECVSRDMRYLASN-NELWRQKFVEEF 420 (522)
Q Consensus 370 p~l~~LP~ELll~ILs~Ld~~dL~~ls~vCr~lr~LasD-d~LWr~lc~~df 420 (522)
+.+..||.||+++||+|||++||+++++|||.|+.++.+ +.|||++|.++.
T Consensus 13 d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~~ 64 (464)
T 3v7d_B 13 DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISEN 64 (464)
T ss_dssp CHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccc
Confidence 457889999999999999999999999999999999998 899999998764
No 10
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=98.51 E-value=1.9e-07 Score=74.45 Aligned_cols=72 Identities=13% Similarity=0.279 Sum_probs=63.5
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|+++||. .+++..++|+.+.|+++||+.|.....-+.+..+|..+||. | +|+.+|++|||..|+-|+++..+
T Consensus 5 m~i~vk~--~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~-L---~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 5 LNIHIKS--GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKI-L---KDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEE--TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEE-C---CTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEE--CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeE-c---CCCCCHHHcCCCCCCEEEEEEcC
Confidence 7888988 78899999999999999999999987668888999999973 4 26799999999999999998754
No 11
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=98.50 E-value=2.8e-07 Score=72.93 Aligned_cols=73 Identities=18% Similarity=0.272 Sum_probs=63.6
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|+++||.. .+++..++|+.+.|+++||+.|.+...-+.+..+|.++||. | +|+.+|++|||..|+-|++++..
T Consensus 1 M~i~vk~~-~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~-L---~d~~tL~~~~i~~g~~i~l~~~~ 73 (76)
T 3a9j_A 1 MQIFVKTL-TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-L---EDGRTLSDYNIQRESTLHLVLRL 73 (76)
T ss_dssp CEEEEEET-TSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEE-C---CTTCBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEcC-CCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeE-C---CCCCcHHHcCCCCCCEEEEEEeC
Confidence 99999983 35788999999999999999999987667888999999984 4 36899999999999999998754
No 12
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=98.47 E-value=3.4e-07 Score=72.41 Aligned_cols=72 Identities=10% Similarity=0.290 Sum_probs=63.2
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRD 77 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~ 77 (522)
|+++||.. .+++..++|+.+.|+++||+.|.+...-+.+..+|..+||. | +|+.+|++|||..|+-|++++.
T Consensus 1 M~i~vk~~-~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~-L---~d~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 1ndd_A 1 MLIKVKTL-TGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQ-M---NDEKTAADYKILGGSVLHLVLA 72 (76)
T ss_dssp CEEEEECT-TSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEE-C---CTTSBGGGGTCCTTCEEEEEEC
T ss_pred CEEEEECC-CCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEE-C---CCCCcHHHcCCCCCCEEEEEEe
Confidence 99999984 35788999999999999999999987667888999999983 4 3789999999999999999875
No 13
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.47 E-value=1.7e-07 Score=80.26 Aligned_cols=76 Identities=16% Similarity=0.181 Sum_probs=64.9
Q ss_pred Ceeeeeecccc---cceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecC
Q 040442 1 MKLRLRSLENK---ETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRD 77 (522)
Q Consensus 1 MKLRvR~~~~~---~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~ 77 (522)
|+++||..... ++..|+|+.+.|+.+||+.|.+...-+.+..+|.++|| .|. |+..||++|||..||.|+++..
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk-~L~--D~~~tL~~ygI~~g~~l~l~~~ 84 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQ-LLT--DDHCSLGSYGLKDGDMVVLLQK 84 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTE-EEC--CSSSBHHHHTCCTTEEEEECBC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCE-ECC--CCcccHHHCCCCCCCEEEEEEC
Confidence 89999996443 78889999999999999999998766788899999998 452 4557999999999999999987
Q ss_pred CC
Q 040442 78 PY 79 (522)
Q Consensus 78 ~~ 79 (522)
..
T Consensus 85 ~~ 86 (102)
T 1v5o_A 85 DN 86 (102)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 14
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.47 E-value=2.4e-07 Score=76.81 Aligned_cols=75 Identities=23% Similarity=0.355 Sum_probs=58.2
Q ss_pred Ceeeeeecccccceecc-CCCCcchHHHHHHHhhhcCCCCCceEEEecCC-CCCCCCCCcccccccccccCCeEEEecC
Q 040442 1 MKLRLRSLENKETLRLE-VPSSCTLHELGETLSQLISSSPSSLRFSLNRK-DELHASSPPESLHSLGVTAGDLIFYSRD 77 (522)
Q Consensus 1 MKLRvR~~~~~~T~rle-vp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~k-d~L~~~~~~~tL~slGIvSGDLI~~~l~ 77 (522)
|++|||. ...+..|+ |+.++|++||++.|++...-+.+.++|..+.. ..|.-.+++.+|++|||.+||.|+|.-.
T Consensus 1 m~i~vr~--~~G~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKA--KGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEE--TTEEEEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEc--CCCCEEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 9999999 44444577 99999999999999998654667777777642 2332235789999999999999988754
No 15
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.38 E-value=5.4e-07 Score=72.52 Aligned_cols=73 Identities=18% Similarity=0.286 Sum_probs=63.0
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|+++||.. .+++..++|+.+.|+++||+.|.+...-+.+..+|.++||. | +|+.+|++|||..|+-|++++.+
T Consensus 8 m~i~vk~~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~-L---~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 8 MQLTVKAL-QGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKA-L---ADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp EEEEEEET-TSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEE-C---CTTSBGGGGTCCSSBCCEEECCC
T ss_pred EEEEEEeC-CCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeE-C---CCCCcHHHcCCCCCCEEEEEEeC
Confidence 78999973 35788899999999999999999987667888999999984 4 37899999999999999998754
No 16
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.38 E-value=1.2e-06 Score=73.71 Aligned_cols=73 Identities=14% Similarity=0.256 Sum_probs=62.6
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhc--C-CCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLI--S-SSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRD 77 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l--~-~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~ 77 (522)
|++.||.. .+++..++|+.+.|+.+||+.|...+ . -+.+..+|.++||. | +|+.+|++|||..|+-|++++.
T Consensus 1 M~I~Vk~~-~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~-L---~D~~tL~~ygI~~g~~i~l~~~ 75 (95)
T 1uel_A 1 MQVTLKTL-QQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKI-L---NDDTALKEYKIDEKNFVVVMVT 75 (95)
T ss_dssp CEEEEEET-TCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEE-C---CTTSBGGGGTCCSSSEEEEEES
T ss_pred CEEEEEeC-CCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEE-C---CCcCcHHHCCCCCCCEEEEEEe
Confidence 99999984 35788899999999999999999985 2 37788999999974 4 3779999999999999999986
Q ss_pred C
Q 040442 78 P 78 (522)
Q Consensus 78 ~ 78 (522)
.
T Consensus 76 ~ 76 (95)
T 1uel_A 76 K 76 (95)
T ss_dssp S
T ss_pred C
Confidence 4
No 17
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=98.38 E-value=5.9e-07 Score=72.14 Aligned_cols=74 Identities=18% Similarity=0.300 Sum_probs=62.8
Q ss_pred Ceeeeeecccccceecc-CCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLE-VPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rle-vp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|+++||....+....++ |+.+.|+.+||+.|.+...-+.+..+|.++||. | +|+.+|++|||..|+-|++++.+
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~-L---~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQ-M---EDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEE-C---CTTCBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEE-C---CCCCCHHHcCCCCCCEEEEEEeC
Confidence 89999985443334899 999999999999999987668888999999974 4 37899999999999999999864
No 18
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.37 E-value=5.8e-07 Score=74.07 Aligned_cols=74 Identities=26% Similarity=0.372 Sum_probs=64.5
Q ss_pred Ceeeeeecccccceecc-CCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLE-VPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rle-vp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|+++||....+++..|+ |+.+.|+.+||+.|.+...-+.+..+|.++||. | +|+.+|++|||..|+.|++++..
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~-L---~d~~tL~~~~i~~g~~i~l~~~~ 82 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQ-L---ENGYTLFDYDVGLNDIIQLLVRP 82 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEE-C---CSSSBHHHHTCCTTCEEEEEECC
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeE-C---CCCCCHHHCCCCCCCEEEEEEeC
Confidence 88999985554799994 999999999999999987668888999999974 4 37899999999999999999875
No 19
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=98.35 E-value=5.2e-07 Score=74.80 Aligned_cols=74 Identities=16% Similarity=0.115 Sum_probs=65.2
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
||+.||.+ .+++..++|+.+.|+.+||+.|.+...-+++..+|.++||..| +|+.+|++|||..|+-|++++.|
T Consensus 11 ~~i~vk~l-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL---~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 11 MKFLVENL-NGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVIL---REDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp EEEEEEET-TSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECC---CSSSBHHHHTCCTTSCEEEEECC
T ss_pred eEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEec---CCcCCHHHcCCCCCCEEEEEEcC
Confidence 89999984 4578899999999999999999999776888899999998534 37899999999999999999865
No 20
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=98.32 E-value=1.3e-06 Score=73.76 Aligned_cols=73 Identities=18% Similarity=0.273 Sum_probs=64.0
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|+++||.. .+++..++|+.+.|+++||+.|.+...-+.+..+|.++||. | +|+.+|++|||..|+.|++++..
T Consensus 1 M~I~Vk~~-~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~-L---~D~~tL~~~gi~~g~~i~l~~~~ 73 (98)
T 1yx5_B 1 MQIFVKTL-TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-L---EDGRTLSDYNIQKESTLHLVLRL 73 (98)
T ss_dssp CEEEEEET-TSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEE-C---CTTSBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEeC-CCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEE-C---CCCCCHHHcCCCCCCEEEEEEeC
Confidence 99999984 35788999999999999999999987667888999999984 4 37899999999999999999865
No 21
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.31 E-value=1.2e-06 Score=71.17 Aligned_cols=73 Identities=18% Similarity=0.277 Sum_probs=63.9
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|++.||.. .+++..++|+.+.|+.+||+.|.+...-+.+..+|..+||. | +|+.||++|||.+||-|++++.-
T Consensus 4 m~i~vk~~-~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~-L---~d~~tL~~~~i~~~~~i~l~~rl 76 (85)
T 3n3k_B 4 MRIVVKTL-MGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-L---EDGRTLSDYNIHNHSALYLLLKL 76 (85)
T ss_dssp CEEEEECG-GGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEE-C---CTTCBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEeC-CCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeE-C---CCCCCHHHCCCCCCCEEEEEEec
Confidence 89999974 46788999999999999999999988768888999999974 4 37889999999999999999863
No 22
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=98.30 E-value=9.6e-07 Score=71.52 Aligned_cols=73 Identities=19% Similarity=0.289 Sum_probs=63.9
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|++.||.. .+++..++|+.+.|+.+||+.|.+...-+.+..+|..+|| .| +|+.+|++|||..|+-|++++..
T Consensus 4 m~i~vk~~-~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~-~L---~d~~tL~~~~i~~~~~l~l~~r~ 76 (85)
T 3mtn_B 4 MQIFVKTL-TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK-QL---EDGRTLSDYNIQKWSTLFLLLRL 76 (85)
T ss_dssp EEEEEECT-TSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTE-EC---CTTSBTGGGTCCTTCEEEEECCC
T ss_pred EEEEEEcC-CCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCE-EC---CCCCCHHHcCCCCCCEEEEEEEC
Confidence 88999984 4578899999999999999999999877888899999997 34 27799999999999999999864
No 23
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=98.27 E-value=1.9e-06 Score=72.07 Aligned_cols=73 Identities=12% Similarity=0.153 Sum_probs=64.6
Q ss_pred Ceeeeeecccccceec-cCCCCcchHHHHHHHhhhcCCCCCceEEE---ecCCCCCCCCCCcccccccccccCCeEEEec
Q 040442 1 MKLRLRSLENKETLRL-EVPSSCTLHELGETLSQLISSSPSSLRFS---LNRKDELHASSPPESLHSLGVTAGDLIFYSR 76 (522)
Q Consensus 1 MKLRvR~~~~~~T~rl-evp~~~TL~eLr~~l~~~l~~s~~~~~lS---LN~kd~L~~~~~~~tL~slGIvSGDLI~~~l 76 (522)
|+++||. .+++..| +|+.++|+.+||+.|.+...-+.+.-+|. .+||- | +|+.+|++|||..|+-|+++.
T Consensus 8 m~i~Vk~--~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~-L---~D~~~L~~~~i~~g~~l~l~~ 81 (90)
T 1v5t_A 8 LPIIVKW--GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKP-A---ENDVKLGALKLKPNTKIMMMG 81 (90)
T ss_dssp CCEEEEE--TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEE-C---CTTSBHHHHTCCTTEEEEEEC
T ss_pred EEEEEEE--CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcC-c---CCCCCHHHcCCCCCCEEEEEe
Confidence 8999998 8899999 99999999999999999976688888888 88874 4 378999999999999999998
Q ss_pred CCC
Q 040442 77 DPY 79 (522)
Q Consensus 77 ~~~ 79 (522)
.+.
T Consensus 82 ~~~ 84 (90)
T 1v5t_A 82 TRE 84 (90)
T ss_dssp CCS
T ss_pred cCc
Confidence 764
No 24
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=1.3e-06 Score=75.26 Aligned_cols=73 Identities=23% Similarity=0.390 Sum_probs=63.1
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|++.||.+ .+++..|+|..+.|+.+||+.|.+...-+.+..+|-.+||. | +|+.+|++|||..|+-|++++..
T Consensus 2 m~I~Vk~~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~-L---~D~~tL~~~~i~~g~~i~lv~~~ 74 (106)
T 3m62_B 2 VSLTFKNF-KKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKV-L---QDSKTVSECGLKDGDQVVFMVSQ 74 (106)
T ss_dssp -CEEEECT-TCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEE-C---CTTSBTTTTTCCTTCEEEEECCC
T ss_pred EEEEEEeC-CCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEE-C---CCcCCHHHcCCCCCCEEEEEEcC
Confidence 89999974 46788999999999999999999987667788899999984 4 37899999999999999999975
No 25
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.26 E-value=1.3e-06 Score=75.07 Aligned_cols=72 Identities=25% Similarity=0.425 Sum_probs=62.0
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|+++||... .+..|+|..+.|+.+||+.|.+...-+.+..+|.++||. | +|+.+|++|||..|+.|++++..
T Consensus 18 m~I~Vk~~~--g~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~-L---~D~~tL~~~gi~~g~~i~l~~~~ 89 (106)
T 1wx7_A 18 IKVTVKTPK--DKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKI-L---KDPDSLAQCGVRDGLTVHLVIKR 89 (106)
T ss_dssp EEEEEECSS--CEEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEE-C---CTTSCHHHHTCCTTEEEEEEECC
T ss_pred EEEEEEeCC--CcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEE-C---CCcCcHHHcCCCCCCEEEEEEcC
Confidence 889999843 346899999999999999999987667888999999973 4 37899999999999999999865
No 26
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=98.25 E-value=1.3e-06 Score=72.62 Aligned_cols=72 Identities=17% Similarity=0.257 Sum_probs=63.1
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRD 77 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~ 77 (522)
|++.||.. .+++..|+|..+.|+.+||+.|.+...-+.+..+|..+||. | +|+.+|++|||..|+-|++++.
T Consensus 18 m~i~Vk~~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~-L---~D~~tL~~~gi~~g~~i~l~~r 89 (91)
T 3v6c_B 18 MQIFVNTL-TGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-L---EDGRTLSDYNIQKESTLHLVLR 89 (91)
T ss_dssp EEEEEECT-TSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEE-C---CTTCBTGGGTCCTTCEEEEECC
T ss_pred EEEEEEeC-CCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeE-C---CCcCcHHHCCCCCCCEEEEEEe
Confidence 88999964 56888999999999999999999987667888999999974 4 3789999999999999999874
No 27
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=98.25 E-value=1.8e-06 Score=70.31 Aligned_cols=73 Identities=12% Similarity=0.207 Sum_probs=61.5
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhc--C-CCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLI--S-SSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRD 77 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l--~-~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~ 77 (522)
|++.||.. .+++..++|..+.|+.+||+.|.+.+ . -+.+..+|.++||. | +|+.+|++|||..|+-|++++.
T Consensus 6 m~i~vk~~-~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~-L---~D~~tL~~~~i~~g~~i~l~~~ 80 (85)
T 2wyq_A 6 VTITLKTL-QQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKI-L---SDDVPIRDYRIDEKNFVVVMVT 80 (85)
T ss_dssp EEEEEEET-TSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEE-C---CTTSBGGGGCCCTTSEEEEEEC
T ss_pred EEEEEEEC-CCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEE-C---cCCCCHHHcCCCCCCEEEEEEc
Confidence 78899984 35788899999999999999999984 2 37788999999983 4 3789999999999999999986
Q ss_pred C
Q 040442 78 P 78 (522)
Q Consensus 78 ~ 78 (522)
+
T Consensus 81 ~ 81 (85)
T 2wyq_A 81 K 81 (85)
T ss_dssp -
T ss_pred C
Confidence 5
No 28
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.22 E-value=1.7e-06 Score=70.83 Aligned_cols=73 Identities=8% Similarity=0.155 Sum_probs=63.6
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|+++||... +++..++|+.+.|+.+||+.|.+...-+.+..+|.++||. | +|+.+|++|||..|+.|++++..
T Consensus 8 m~i~Vk~~~-g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~-L---~d~~tL~~~~i~~g~~i~l~~~~ 80 (87)
T 1wh3_A 8 IQVFVKNPD-GGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQV-L---QDWLGLGIYGIQDSDTLILSKKK 80 (87)
T ss_dssp EEEEEEETT-TEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEE-C---CSSSBHHHHTCCTTEEEEEEECS
T ss_pred EEEEEEcCC-CCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEE-c---cCCCCHHHCCCCCCCEEEEEEec
Confidence 789999843 5788899999999999999999987668888999999983 4 37899999999999999999864
No 29
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.21 E-value=2.2e-06 Score=71.90 Aligned_cols=71 Identities=23% Similarity=0.285 Sum_probs=59.8
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|+++||.. .+++..++|+.+.|+.+||+.|.+.. .+..+|.++|| .|. |+..+|++|||..|+.|++++..
T Consensus 8 m~i~Vk~~-~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk-~L~--D~~~tL~~y~i~~g~~i~l~~~~ 78 (95)
T 1wia_A 8 INVRLKFL-NDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGR-LLQ--DPARTLSSLNITNNCVIHCHRSP 78 (95)
T ss_dssp EEEEEEET-TTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTE-ECC--CSSCBTTTTTCCTTEEEEEECCC
T ss_pred EEEEEEeC-CCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCE-Ecc--CCcCCHHHcCCCCCCEEEEEECC
Confidence 78999873 35678899999999999999999986 67789999998 442 33399999999999999999965
No 30
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=98.20 E-value=2.3e-06 Score=71.10 Aligned_cols=73 Identities=10% Similarity=0.275 Sum_probs=64.3
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|++.||.. .++|..|+|+.+.|+.+||+.|.+...-+.+..+|..+||. | +|+.||++|||..|+-|++++..
T Consensus 1 M~I~Vk~~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~-L---~D~~tL~~~~i~~g~~l~l~~rl 73 (88)
T 4fbj_B 1 MLIKVKTL-TGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQ-M---NDEKTAADYKILGGSVLHLVLAL 73 (88)
T ss_dssp CEEEEEET-TCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEE-C---CTTSBTTTTTCCTTCEEEEECBC
T ss_pred CEEEEEcC-CCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeE-C---CCCCcHHHcCCCCCCEEEEEEEC
Confidence 99999974 56888999999999999999999987668888899999974 4 37899999999999999999864
No 31
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=98.20 E-value=1.7e-06 Score=70.73 Aligned_cols=72 Identities=10% Similarity=0.290 Sum_probs=63.0
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRD 77 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~ 77 (522)
|++.||.. .+++..|+|..+.|+.+||+.|.+...-+.+..+|..+||. | +|+.+|++|||..||.|++++.
T Consensus 13 m~i~vk~~-~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~-L---~d~~tL~~~~i~~~~~i~l~~r 84 (88)
T 3dbh_I 13 MLIKVKTL-TGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQ-M---NDEKTAADYKILGGSVLHLVLR 84 (88)
T ss_dssp EEEEEECT-TSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEE-C---CTTSBGGGGTCCTTCEEEECCC
T ss_pred EEEEEEcC-CCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeE-C---CCCCcHHHcCCCCCCEEEEEEe
Confidence 78899974 56788999999999999999999997667888899999974 4 3789999999999999999875
No 32
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=98.19 E-value=3.4e-06 Score=70.36 Aligned_cols=73 Identities=18% Similarity=0.273 Sum_probs=64.4
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|++.||.. .+++..|+|..+.|+.+||+.|.+...-+.+..+|..+|+. | +|+.||++|||..|+-|++++..
T Consensus 2 m~i~vk~~-~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~-L---~d~~tL~~~~i~~~~~i~l~~r~ 74 (96)
T 3k9o_B 2 MQIFVKTL-TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-L---EDGRTLSDYNIQKESTLHLVLRL 74 (96)
T ss_dssp CEEEEEET-TCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEE-C---CTTSBTGGGTCCTTCEEEEEECC
T ss_pred cEEEEEeC-CCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEE-C---CCCCcHHHcCCCCCCEEEEEEEc
Confidence 99999984 46788999999999999999999988668888999999974 4 37889999999999999999864
No 33
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=98.18 E-value=2e-06 Score=71.32 Aligned_cols=73 Identities=16% Similarity=0.195 Sum_probs=63.1
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|+++||... +++..++|+.+.|+.+||+.|.+...-+.+..+|.++||. | +|+.+|++|||..|+-|++++..
T Consensus 5 m~I~Vk~~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~-L---~D~~tL~~~~I~~g~~i~l~~~~ 77 (88)
T 2hj8_A 5 LSILVRNNK-GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKP-L---EDQLPLGEYGLKPLSTVFMNLRL 77 (88)
T ss_dssp EEEEEEETT-SCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSC-C---CTTSBHHHHHCSTTCEEEEEEC-
T ss_pred EEEEEECCC-CCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEE-C---CCCCcHHHcCCCCCCEEEEEEEc
Confidence 789999843 5788899999999999999999987668888999999974 4 37899999999999999999875
No 34
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=98.17 E-value=3.1e-06 Score=68.17 Aligned_cols=72 Identities=17% Similarity=0.207 Sum_probs=62.6
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRD 77 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~ 77 (522)
|++.||.. .+++..++|..+.|+.+||+.|.+...-+.+..+|..+||. | +|+.+|++|||..|+-|++++.
T Consensus 5 m~i~Vk~~-~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~-L---~d~~tL~~~~i~~~~~l~l~~r 76 (79)
T 3phx_B 5 LSILVRNN-KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKP-L---EDQLPLGEYGLKPLSTVFMNLR 76 (79)
T ss_dssp EEEEEECT-TSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEE-C---CTTSBGGGGTCCTTCEEEEEEC
T ss_pred EEEEEEeC-CCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEE-C---CCCCcHHHCCCCCCCEEEEEEe
Confidence 78899984 45788899999999999999999887667888999999974 4 3789999999999999999975
No 35
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=98.17 E-value=3.2e-06 Score=71.54 Aligned_cols=72 Identities=19% Similarity=0.296 Sum_probs=63.7
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRD 77 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~ 77 (522)
|++.||.. .+++..|+|..+.|+.+||+.|.+...-+.+..+|..+||. | +|+.+|++|||..|+.|++++.
T Consensus 23 m~I~Vk~~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~-L---~D~~tL~~~~i~~g~~i~l~~r 94 (98)
T 4hcn_B 23 MQIFVKTL-TGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQ-L---EDGRTLSDYNIQKESTLHLVLR 94 (98)
T ss_dssp CEEEEEET-TCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEE-C---CTTCBSGGGTCCTTEEEEEECB
T ss_pred EEEEEEeC-CCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEE-C---CCCCcHHHCCCCCCCEEEEEEe
Confidence 89999974 56788999999999999999999987767888999999975 4 3889999999999999999975
No 36
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=98.16 E-value=2.9e-06 Score=72.56 Aligned_cols=72 Identities=21% Similarity=0.338 Sum_probs=63.6
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|++.||.. +++..|+|+.+.|+++||+.|.+...-+.+..+|.++||. | +|+.+|++|||..|+.|++++..
T Consensus 26 m~I~Vk~~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~-L---~D~~tL~~~gI~~g~~I~l~~~~ 97 (101)
T 2klc_A 26 MKVTVKTP--KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKI-L---KDQDTLSQHGIHDGLTVHLVIKT 97 (101)
T ss_dssp EEEEEECS--SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEE-E---CTTCCTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEeC--CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEE-C---CCcCcHHHcCCCCCCEEEEEEcC
Confidence 78999994 7889999999999999999999987667888999999974 4 37899999999999999999865
No 37
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.14 E-value=3e-06 Score=72.91 Aligned_cols=73 Identities=21% Similarity=0.256 Sum_probs=63.1
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|+++||.. .+++..++|..+.|+.+||..|.+...-+.+..+|.++||. | +|+.+|++|||..|+-|++++..
T Consensus 24 m~I~Vk~~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~-L---~D~~tL~~ygI~~g~ti~lv~~~ 96 (106)
T 1ttn_A 24 CQLRLRLS-TGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRP-L---TDKMKFEELKIPKDYVVQVIVSQ 96 (106)
T ss_dssp EEEEEEET-TTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEE-C---CTTSHHHHCCCSSSCEEEEECCC
T ss_pred EEEEEEcC-CCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEE-C---CCCCcHHHcCCCCCCEEEEEEeC
Confidence 78889873 35788899999999999999999987667888999999983 4 37899999999999999999964
No 38
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=98.14 E-value=3.2e-06 Score=71.06 Aligned_cols=71 Identities=21% Similarity=0.214 Sum_probs=62.8
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|++.||. +++..++|+.+.|+.+||+.|.+...-+.+..+|.++||. | +|+.+|++|||..|+-|++++..
T Consensus 20 m~I~Vk~---g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~-L---~D~~tL~~y~I~~gstI~lv~rl 90 (93)
T 2l7r_A 20 MQLFVRA---QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAP-L---EDEATLGQCGVEALTTLEVAGRM 90 (93)
T ss_dssp CEEEEES---SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEE-C---CTTSBHHHHTCCSSCEEEEECCC
T ss_pred EEEEEEC---CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEE-C---CCCCcHHHCCCCCCCEEEEEEec
Confidence 8899998 5788999999999999999999997667888999999984 4 37899999999999999999853
No 39
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.13 E-value=1.6e-06 Score=72.76 Aligned_cols=72 Identities=10% Similarity=0.241 Sum_probs=63.4
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|+++||.. +++..++|+.+.|+.+||+.|.+...-+.+..+|.++||. | +|+.||++|||..|+.|++++..
T Consensus 18 m~i~Vk~~--g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~-L---~D~~tL~~~gi~~g~~i~l~~~~ 89 (96)
T 1wx8_A 18 IRVSVKTP--QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKI-L---RDQDILSQRGILDGSTVHVVVRS 89 (96)
T ss_dssp EEEEEECS--SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEE-C---CTTSCHHHHTCCTTEEEECCBCC
T ss_pred EEEEEEEC--CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEE-C---CCcCCHHHCCCCCCCEEEEEEeC
Confidence 78999994 8899999999999999999999997667788889999873 4 37899999999999999999875
No 40
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=98.12 E-value=3e-06 Score=72.42 Aligned_cols=72 Identities=25% Similarity=0.423 Sum_probs=61.9
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|+++||.... +..|+|+.+.|+.+||+.|.+...-+.+..+|.++||. | +|+.||++|||..|+-|++++..
T Consensus 23 m~I~Vk~~~g--~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~-L---~D~~tL~~ygI~~gstI~l~~r~ 94 (100)
T 1yqb_A 23 IKVTVKTPKD--KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKI-L---KDPDSLAQCGVRDGLTVHLVIKR 94 (100)
T ss_dssp EEEEEECSSC--EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEE-C---CTTSBHHHHTCCTTCEEEEEECC
T ss_pred EEEEEEcCCC--cEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEE-C---CCcCcHHHCCCCCCCEEEEEEcC
Confidence 7899998433 46889999999999999999987667888999999974 4 37899999999999999999875
No 41
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=97.40 E-value=3.6e-07 Score=72.94 Aligned_cols=73 Identities=18% Similarity=0.250 Sum_probs=62.8
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|+++||.. .+++..++|+.+.|+.+||+.|.+...-+.+..+|.++|| .| +|+.+|++|||..|+-|++++..
T Consensus 1 M~i~Vk~~-~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk-~L---~d~~tL~~~~i~~g~~i~l~~rl 73 (76)
T 3b1l_X 1 MIVFVRFN-SSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGK-EL---PNHLTVQNCDLEQQSIVHIVQRP 73 (76)
Confidence 99999983 4578889999999999999999988765788889999997 34 37899999999999999998753
No 42
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.11 E-value=2.5e-06 Score=72.44 Aligned_cols=73 Identities=12% Similarity=0.159 Sum_probs=62.6
Q ss_pred Ceeeeeecccccce-eccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCCC
Q 040442 1 MKLRLRSLENKETL-RLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDPY 79 (522)
Q Consensus 1 MKLRvR~~~~~~T~-rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~~ 79 (522)
|+++||. .+++. .|+|+.++|+.+||+.|.+...-+.+..+|..+|| .| . |. +|++|||..|+-|+++..+.
T Consensus 8 m~i~Vk~--~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk-~L-~--D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 8 YSVTVKW--GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGG-TL-K--DD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp EEEEEEE--TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTE-EC-C--SS-CCCSCCCCSSCEEECCCCCC
T ss_pred EEEEEEE--CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCc-CC-C--CC-CHHHCCCCCCCEEEEEecch
Confidence 7899998 78999 69999999999999999999765778788888998 34 2 45 99999999999999998764
Q ss_pred c
Q 040442 80 A 80 (522)
Q Consensus 80 ~ 80 (522)
+
T Consensus 81 ~ 81 (96)
T 1wgg_A 81 A 81 (96)
T ss_dssp C
T ss_pred h
Confidence 3
No 43
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.10 E-value=4.6e-06 Score=69.45 Aligned_cols=73 Identities=18% Similarity=0.307 Sum_probs=62.7
Q ss_pred CeeeeeecccccceeccCCCC-----cchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEe
Q 040442 1 MKLRLRSLENKETLRLEVPSS-----CTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYS 75 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~-----~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~ 75 (522)
|+++||. .+++..|+|+.+ .|+.+||+.|.+...-+.+..+|..+||. |. |+..+|++|||..|+-|+++
T Consensus 8 ~~v~Vk~--~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~-L~--D~~~~L~~~~i~~g~~i~l~ 82 (92)
T 1wxv_A 8 LTVTVTH--SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKS-LK--EMETPLSALGIQDGCRVMLI 82 (92)
T ss_dssp EEEEEEC--SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEE-EC--CSSSBHHHHTCCSSEEEEEE
T ss_pred EEEEEEE--CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCee-cC--CCcccHHHCCCCCCCEEEEE
Confidence 7889998 688889999985 79999999999987667888899999984 42 45779999999999999999
Q ss_pred cCC
Q 040442 76 RDP 78 (522)
Q Consensus 76 l~~ 78 (522)
..+
T Consensus 83 ~~~ 85 (92)
T 1wxv_A 83 GKK 85 (92)
T ss_dssp SCC
T ss_pred ecC
Confidence 865
No 44
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.09 E-value=4.1e-06 Score=74.59 Aligned_cols=72 Identities=19% Similarity=0.321 Sum_probs=63.3
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|+++||.. +++..|+|+.+.|+.+||+.|.+...-+.+..+|.++||. | +|+.||.+|||..|+.|++++..
T Consensus 33 m~I~Vk~~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~-L---~D~~tL~dygI~~gstI~lv~~~ 104 (125)
T 1j8c_A 33 IKVTVKTP--KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKI-L---KDQDTLIQHGIHDGLTVHLVIKR 104 (125)
T ss_dssp EEEEEECS--SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEE-E---STTSCGGGTTCSSSEEEEEEEC-
T ss_pred EEEEEEeC--CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEE-c---CCCCCHHHcCCCCCCEEEEEecc
Confidence 78999995 7889999999999999999999987667888999999984 4 37899999999999999999865
No 45
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=98.08 E-value=7.1e-06 Score=68.07 Aligned_cols=73 Identities=16% Similarity=0.264 Sum_probs=62.3
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|++-||.+ .+++..++|+.+.|+++||+.|.+...-+.+..+|..+||. | +|+.||++|||..|+.|++++..
T Consensus 10 ~~i~v~~~-~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~-L---~D~~tL~~~gi~~g~~i~l~~r~ 82 (88)
T 1sif_A 10 LQLFIKTL-TGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQ-L---EDGRTLSDYNIQKESTLHLVLRL 82 (88)
T ss_dssp CEEEEEET-TSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEE-C---CTTSBSGGGTCCTTCEEEEEC--
T ss_pred eEEEEEeC-CCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEE-C---CCCCcHHHcCCCCCCEEEEEEeC
Confidence 78888874 45888999999999999999999998768888999999983 4 37899999999999999999864
No 46
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=98.08 E-value=5e-06 Score=68.68 Aligned_cols=72 Identities=17% Similarity=0.302 Sum_probs=62.6
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|+++||.+ .+++..|+|..+.|+.+||+.|.+...-+.+..+|-.+||. | +|+.+|++||| .|+-|++++..
T Consensus 6 m~i~Vk~~-~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~-L---~d~~tL~~~~i-~g~~i~l~~~~ 77 (90)
T 4dwf_A 6 LEVLVKTL-DSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRV-L---QDDKKLQEYNV-GGKVIHLVERA 77 (90)
T ss_dssp EEEEEEET-TCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEE-C---CTTSBGGGGTC-TTEEEEEEECC
T ss_pred EEEEEEcC-CCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeE-C---CCCCCHHHcCC-CCcEEEEEecC
Confidence 88999984 35778899999999999999999987667888899999984 4 37899999999 89999999975
No 47
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=98.08 E-value=5.4e-06 Score=71.83 Aligned_cols=72 Identities=18% Similarity=0.287 Sum_probs=62.7
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRD 77 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~ 77 (522)
|+++||.. .+++..++|..+.|+.+||+.|.+...-+.+..+|.++||. | +|+.+|++|||..|+.|++++.
T Consensus 36 m~I~Vk~~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~-L---~D~~tL~~~gI~~gs~I~l~~r 107 (111)
T 2ojr_A 36 MQIFVKTL-TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-L---EDGRTLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp EEEEEECS-SSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEE-C---CSSCBTTTTTCCTTCEEEEEEC
T ss_pred EEEEEEcC-CCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEE-C---CCCCcHHHcCCCCCCEEEEEEe
Confidence 78899874 35788899999999999999999987668888999999984 4 3789999999999999999875
No 48
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.03 E-value=4.4e-06 Score=70.61 Aligned_cols=71 Identities=20% Similarity=0.255 Sum_probs=61.3
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|+++||. .+++..|+|+.+.|+.+||+.|.+...-+.+..+|..+||. | ++. +|++|||..|+.|+++..+
T Consensus 18 ~~i~Vk~--~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~-L---dd~-tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 18 VDLKIIW--NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLV-P---EDK-TLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp EEEEEEE--TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBC-C---SSS-BHHHHCCCTTEEEEECCSS
T ss_pred EEEEEEE--CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCee-C---CcC-cHHHCCCCCCCEEEEEecc
Confidence 6788887 78999999999999999999999997667788888889984 4 344 9999999999999998754
No 49
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=98.02 E-value=8.2e-06 Score=67.50 Aligned_cols=71 Identities=20% Similarity=0.364 Sum_probs=60.5
Q ss_pred eeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 2 KLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 2 KLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
++++.. .+++..++|+.+.|+++||+.|.+...-+.+..+|..+|| .| +|+.+|++|||..|+-|+++..+
T Consensus 14 ~~~~~~--~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk-~L---~D~~tL~~~gi~~g~~l~l~~s~ 84 (85)
T 2kd0_A 14 KLTVKF--GGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGK-VL---VETSTLKQSDVGSGAKLMLMASQ 84 (85)
T ss_dssp EEEEEE--TTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTE-EC---CTTCBTTTTTCCTTEEEEEECCC
T ss_pred EEEEEE--CCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCe-EC---CCcCCHHHCCCCCCCEEEEEEeC
Confidence 445555 7889999999999999999999998766788889999998 34 37899999999999999998764
No 50
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=98.02 E-value=6.3e-06 Score=69.62 Aligned_cols=72 Identities=13% Similarity=0.205 Sum_probs=62.5
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCc-ccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPP-ESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~-~tL~slGIvSGDLI~~~l~~ 78 (522)
|++.||. .+.+..|+|+.+.|+.+||+.|.+...-+.+..+|.++||. | +|+ .||++|||..|+-|++++..
T Consensus 16 ~~I~Vk~--~~~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~-L---~D~~~tL~~ygI~~gstl~lv~r~ 88 (94)
T 2kan_A 16 IHVTVKF--PSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIE-L---ADDYRNLNEYGITEFSEIVVFLKS 88 (94)
T ss_dssp EEEEEEC--SSCEEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEE-E---CCTTSBHHHHTCCTTEEEEEEECC
T ss_pred EEEEEEc--CCcEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEE-C---CCCcccHHHCCCCCCCEEEEEEeC
Confidence 7888998 44588999999999999999999997668888999999983 4 256 99999999999999999865
No 51
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.02 E-value=8.8e-06 Score=70.42 Aligned_cols=74 Identities=20% Similarity=0.223 Sum_probs=63.7
Q ss_pred Ceeeeeecc--cccceeccCCC-CcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecC
Q 040442 1 MKLRLRSLE--NKETLRLEVPS-SCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRD 77 (522)
Q Consensus 1 MKLRvR~~~--~~~T~rlevp~-~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~ 77 (522)
|.++||... .+++..++|+. +.|+.+||+.|.+...-+.+..+|.++|| .| +|+.+|++|||..|+-|++++.
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk-~L---~D~~tL~~y~I~~g~~l~l~~r 103 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAG-FL---KDNMSLAHYNVGAGEILTLSLR 103 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSS-BC---CTTSBTTTTTCSSSCEEEEECS
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCE-EC---CCCCcHHHCCCCCCCEEEEEEE
Confidence 678888853 56889999998 99999999999998766788899999998 34 3789999999999999999986
Q ss_pred C
Q 040442 78 P 78 (522)
Q Consensus 78 ~ 78 (522)
.
T Consensus 104 ~ 104 (111)
T 1we6_A 104 E 104 (111)
T ss_dssp S
T ss_pred c
Confidence 4
No 52
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.99 E-value=2.4e-06 Score=74.33 Aligned_cols=73 Identities=12% Similarity=0.232 Sum_probs=61.2
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCC---------------CCceEEEecCCCCCCCCCCcccccccc
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSS---------------PSSLRFSLNRKDELHASSPPESLHSLG 65 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s---------------~~~~~lSLN~kd~L~~~~~~~tL~slG 65 (522)
||+.|+- -.+++..|+|+.++|+.|||+.|.+...-+ .+.++|..|||--. ||..||++||
T Consensus 8 M~I~Vk~-l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~---dD~~tL~dyg 83 (105)
T 1v2y_A 8 MTVRVCK-MDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLT---EDRKKLRDYG 83 (105)
T ss_dssp EEEEEEC-SSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEEC---CSSSBHHHHT
T ss_pred EEEEEEe-cCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCcc---CCcCCHHHcC
Confidence 8899975 267899999999999999999999996321 14689999998433 5889999999
Q ss_pred cccCCeEEEecC
Q 040442 66 VTAGDLIFYSRD 77 (522)
Q Consensus 66 IvSGDLI~~~l~ 77 (522)
|..||-|+|++-
T Consensus 84 I~~g~~l~lv~~ 95 (105)
T 1v2y_A 84 IRNRDEVSFIKK 95 (105)
T ss_dssp CCSSEEEEEEEC
T ss_pred CCCCCEEEEEeh
Confidence 999999999985
No 53
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.99 E-value=9.3e-06 Score=69.51 Aligned_cols=71 Identities=13% Similarity=0.289 Sum_probs=61.6
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRD 77 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~ 77 (522)
|+++||. .+++..|+|..+.|+++||+.|.+...-+.+..+|..+|| .| +|+.+|++|||..|+-|+++..
T Consensus 29 i~I~Vk~--~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk-~L---~D~~tL~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 29 LNIHIKS--GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGK-IL---KDDQTVESYHIQDGHSVHLVKS 99 (101)
T ss_dssp CCEEEEC--SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTE-EC---CTTSBTTTTTCCTTEEEEECCC
T ss_pred EEEEEEE--CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCE-EC---CCcCcHHHCCCCCCCEEEEEeC
Confidence 4677776 8899999999999999999999998866778888999997 34 3789999999999999999875
No 54
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=97.98 E-value=6e-06 Score=66.47 Aligned_cols=72 Identities=21% Similarity=0.335 Sum_probs=62.2
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRD 77 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~ 77 (522)
|++.||.. .++++.++|..+.|+.+||+.+++...-+.+..+|..+|+ .|. |+.||++|||..||.|++++.
T Consensus 4 m~i~vk~~-~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~-~L~---d~~tl~~~~i~~~~~i~l~~~ 75 (79)
T 2uyz_B 4 IKLKVIGQ-DSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQ-RIA---DNHTPKELGMEEEDVIEVYQE 75 (79)
T ss_dssp EEEEEECT-TCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTE-ECC---TTCCHHHHTCCTTEEEEEEEC
T ss_pred EEEEEECC-CCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCE-EeC---CCCCHHHcCCCCCCEEEEEEe
Confidence 77888873 3468889999999999999999998766778899999997 452 789999999999999999975
No 55
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.95 E-value=2.2e-05 Score=67.67 Aligned_cols=74 Identities=14% Similarity=0.262 Sum_probs=62.1
Q ss_pred Ceeeeeecccc--cceeccCCC---------CcchHHHHHHHhhhc--CCCCCc-eEEEecCCCCCCCCCCccccccccc
Q 040442 1 MKLRLRSLENK--ETLRLEVPS---------SCTLHELGETLSQLI--SSSPSS-LRFSLNRKDELHASSPPESLHSLGV 66 (522)
Q Consensus 1 MKLRvR~~~~~--~T~rlevp~---------~~TL~eLr~~l~~~l--~~s~~~-~~lSLN~kd~L~~~~~~~tL~slGI 66 (522)
|+|.||....+ ++..|+|+. +.|+.+||+.|.+.. .-+.+. .+|-.+||. | +|+.+|++|||
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~-L---~D~~tL~~y~i 88 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRK-L---KDDQTLDFYGI 88 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEE-C---CTTCBHHHHTC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeE-C---CCCCcHHHcCC
Confidence 78999984331 588889776 589999999999998 458888 999999984 4 37799999999
Q ss_pred ccCCeEEEecCC
Q 040442 67 TAGDLIFYSRDP 78 (522)
Q Consensus 67 vSGDLI~~~l~~ 78 (522)
..|+.|++++..
T Consensus 89 ~~g~~i~lv~~~ 100 (107)
T 1x1m_A 89 QPGSTVHVLRKS 100 (107)
T ss_dssp CTTCEEEEEESS
T ss_pred CCCCEEEEEeCC
Confidence 999999999865
No 56
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=97.92 E-value=1.3e-05 Score=69.59 Aligned_cols=72 Identities=18% Similarity=0.287 Sum_probs=62.9
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRD 77 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~ 77 (522)
|+++||.. .+++..|+|..+.|+.+||..|.+...-+.+..+|.++||- | +|..+|++|||..|+-|++++.
T Consensus 36 m~I~Vk~~-~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~-L---~D~~tL~~~gI~~gs~I~l~~r 107 (111)
T 3vdz_A 36 MQIFVKTL-TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-L---EDGRTLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp EEEEEECS-SSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEE-C---CTTSBTTTTTCCTTCEEEEEEC
T ss_pred EEEEEEeC-CCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEE-C---CCCCcHHHCCCCCCCEEEEEEe
Confidence 78999973 45788999999999999999999998668888999999973 4 3788999999999999999985
No 57
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.86 E-value=2.6e-05 Score=65.05 Aligned_cols=74 Identities=18% Similarity=0.231 Sum_probs=62.3
Q ss_pred Ceeeeeecccc-cceeccCCCCcchHHHHHHHhhhc--CCCCCceEEEecCCCCCCCCCCccccccc--ccccCCeEEEe
Q 040442 1 MKLRLRSLENK-ETLRLEVPSSCTLHELGETLSQLI--SSSPSSLRFSLNRKDELHASSPPESLHSL--GVTAGDLIFYS 75 (522)
Q Consensus 1 MKLRvR~~~~~-~T~rlevp~~~TL~eLr~~l~~~l--~~s~~~~~lSLN~kd~L~~~~~~~tL~sl--GIvSGDLI~~~ 75 (522)
|++.||....+ .++.|+++.+.|..+||+.|++.. .-+.+..+|..+|| .| +|+.+|++| ||..|+.|+++
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk-~L---~D~~tL~~~~~~i~~~~~i~lv 83 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGK-LL---LDHQCLRDLLPKQEKRHVLHLV 83 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTE-EC---CSSSCHHHHSCSSSCSEEEEEE
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCE-EC---cCcCCHHHHhcCCCCCCEEEEE
Confidence 78999985333 278889989999999999999998 34788899999997 34 277899999 99999999999
Q ss_pred cCC
Q 040442 76 RDP 78 (522)
Q Consensus 76 l~~ 78 (522)
+..
T Consensus 84 ~~~ 86 (93)
T 1wgd_A 84 CNV 86 (93)
T ss_dssp CCC
T ss_pred eCC
Confidence 865
No 58
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=97.85 E-value=3.2e-05 Score=68.90 Aligned_cols=73 Identities=18% Similarity=0.273 Sum_probs=64.0
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|+++||.. .+++..++|+.+.|+.+||+.|.+...-+.+..+|.++|+. | +|+.+|++|||..|+-|+++...
T Consensus 1 M~i~vk~~-~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~-L---~d~~tL~~~~i~~~~~l~l~~~~ 73 (152)
T 3b08_A 1 MQIFVKTL-TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-L---EDGRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp CEEEEEET-TSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEE-C---CTTSBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEeC-CCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeE-C---cCcccHHHhccCCCCeeEEEeec
Confidence 99999973 35788999999999999999999997667888999999974 4 37899999999999999999864
No 59
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=97.85 E-value=1.9e-05 Score=64.83 Aligned_cols=70 Identities=17% Similarity=0.311 Sum_probs=60.0
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEec
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSR 76 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l 76 (522)
|++.||.. .+++..++|..+.|+.+||+.|.+...-+.+..+|..+||. | +|+.+|++||| .|+-|++++
T Consensus 18 m~i~Vk~~-~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~-L---~D~~tL~~~~i-~g~~i~lv~ 87 (88)
T 4eew_A 18 LEVLVKTL-DSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRV-L---QDDKKLQEYNV-GGKVIHLVE 87 (88)
T ss_dssp EEEEEEET-TSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEE-C---CTTSBGGGGTC-TTEEEEEEE
T ss_pred EEEEEEcC-CCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEE-C---CCCCcHHHcCC-CCcEEEEEE
Confidence 78899984 35778899998999999999999987668888899999973 4 37899999999 899999986
No 60
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=97.76 E-value=2.4e-05 Score=66.13 Aligned_cols=72 Identities=21% Similarity=0.343 Sum_probs=62.4
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRD 77 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~ 77 (522)
|++.||.. .++++.++|..+.|+.+||+.++....-+.+..+|..+|+ .| .|+.||++|||..||.|++++.
T Consensus 22 m~I~Vk~~-~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk-~L---~d~~tl~dy~i~~g~~I~l~~~ 93 (97)
T 1wyw_B 22 IKLKVIGQ-DSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQ-RI---ADNHTPKELGMEEEDVIEVYQE 93 (97)
T ss_dssp EEEEEECT-TCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTE-EC---CTTCCHHHHTCCTTCEEEEEES
T ss_pred EEEEEEeC-CCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCe-Ec---CCCCCHHHCCCCCCCEEEEEEe
Confidence 77888873 4578889999899999999999999776788899999998 44 2789999999999999999975
No 61
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=97.72 E-value=6.9e-05 Score=69.86 Aligned_cols=73 Identities=19% Similarity=0.282 Sum_probs=64.7
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|++.||.. .+++..++|..+.|+.+||+.|.+...-+.+..+|..+||. | +|+.+|++|||..|+-|++++..
T Consensus 1 MqI~Vk~~-~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~-L---~D~~tL~~y~I~~gstI~Lvlrl 73 (169)
T 3l0w_B 1 MQIFVKTL-TGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQ-L---EDGRTLSDYNIQKESTLHLVLRL 73 (169)
T ss_dssp CEEEEEET-TSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEE-C---CTTSBGGGGTCCTTCEEEEEECC
T ss_pred CEEEEEeC-CCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCcc-c---cCcCcHHHcCCCCCCEEEEEEEe
Confidence 99999984 45788899999999999999999987768888999999986 4 37899999999999999999964
No 62
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.67 E-value=5.9e-05 Score=63.51 Aligned_cols=71 Identities=21% Similarity=0.185 Sum_probs=58.7
Q ss_pred eeeeeeccccc--ceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCC-----CCCCCCCcccccccccccCCeEEE
Q 040442 2 KLRLRSLENKE--TLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKD-----ELHASSPPESLHSLGVTAGDLIFY 74 (522)
Q Consensus 2 KLRvR~~~~~~--T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd-----~L~~~~~~~tL~slGIvSGDLI~~ 74 (522)
+|.|+. +.. ...++|+.+.|+++||+.|.....-+++..+|.++|++ .|. +|+.+|++|||..|+-|++
T Consensus 9 ~l~I~~--~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~--~D~~tL~~y~i~~g~~l~v 84 (95)
T 1v6e_A 9 MVFISS--SLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLD--QEDALLGSYPVDDGCRIHV 84 (95)
T ss_dssp EEEEEE--TTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECC--CSSSBTTSSSCCTTCEEEE
T ss_pred EEEEEE--CCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccC--CCcCCHhHCCCCCCCEEEE
Confidence 566666 444 67889999999999999999997668889999999853 244 4899999999999999998
Q ss_pred ec
Q 040442 75 SR 76 (522)
Q Consensus 75 ~l 76 (522)
+-
T Consensus 85 ~d 86 (95)
T 1v6e_A 85 ID 86 (95)
T ss_dssp BC
T ss_pred EE
Confidence 74
No 63
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=97.66 E-value=3.9e-05 Score=68.15 Aligned_cols=71 Identities=21% Similarity=0.259 Sum_probs=62.1
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccc-------cCCeEE
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVT-------AGDLIF 73 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIv-------SGDLI~ 73 (522)
|.||+|- .|.|+-|+|..+.|..+||+.|.....-+++..+|..+|| .| +|+.||++|||. .+.-|+
T Consensus 3 mfl~ir~--~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk-~L---eD~~TLsdy~I~~~~a~~q~~stL~ 76 (118)
T 2fnj_B 3 VFLMIRR--HKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQ-LL---DDGKTLGECGFTSQTARPQAPATVG 76 (118)
T ss_dssp EEEEEEE--BTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTE-EC---CTTSBHHHHTCCTTTSBTTBCEEEE
T ss_pred EEEEEec--CCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCe-EC---CCCCCHHHcCcccccccCCCCCEEE
Confidence 5566666 7778999999999999999999998776888899999998 44 489999999999 699999
Q ss_pred EecC
Q 040442 74 YSRD 77 (522)
Q Consensus 74 ~~l~ 77 (522)
+++.
T Consensus 77 L~lr 80 (118)
T 2fnj_B 77 LAFR 80 (118)
T ss_dssp EEEB
T ss_pred EEec
Confidence 9997
No 64
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=97.66 E-value=8.9e-05 Score=67.24 Aligned_cols=72 Identities=21% Similarity=0.296 Sum_probs=63.5
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEE-e-cCCCCCCCCCCcccccccccccCCeEEEecC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFS-L-NRKDELHASSPPESLHSLGVTAGDLIFYSRD 77 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lS-L-N~kd~L~~~~~~~tL~slGIvSGDLI~~~l~ 77 (522)
|++.||.. .+++..++|..+.|..+||+.|.+...-+.+..+|. . ||+. | +|+.+|++|||.+|+-|++++.
T Consensus 3 m~i~vk~~-~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~-L---~d~~tL~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 3 WDLTVKML-AGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVA-L---QDRVPLASQGLGPGSTVLLVVD 76 (159)
T ss_dssp CEEEEEET-TSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCB-C---CTTSCGGGGTCCTTCEEEEEEC
T ss_pred eEEEEEEC-CCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCC-C---CCCCCHHHcCCCCCCEEEEEcc
Confidence 89999964 467889999999999999999999977688888898 7 8864 5 4899999999999999999986
No 65
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=97.64 E-value=0.0001 Score=64.27 Aligned_cols=72 Identities=18% Similarity=0.239 Sum_probs=62.1
Q ss_pred eeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 2 KLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 2 KLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|+.||.+ .+++..++|+.+.|+.+||+.|.+...-+++..+|..+||. | +|+.||++|||..|+.|++++..
T Consensus 11 ~i~vk~l-~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~-L---~D~~tL~~ygI~~gstI~l~~~~ 82 (114)
T 2kdi_A 11 QIFAKTL-TGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQ-L---EDGRTLSDYNIQRESTLHLVLRL 82 (114)
T ss_dssp EEEEEET-TCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEE-C---CTTCBTTTTTCCSSCEEEEEECC
T ss_pred EEEEEeC-CCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEE-C---CCCCcHHHCCCCCCCEEEEEEEc
Confidence 6677764 45888999999999999999999987768888999999983 4 37899999999999999999865
No 66
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=97.63 E-value=7.3e-06 Score=72.82 Aligned_cols=73 Identities=19% Similarity=0.282 Sum_probs=0.0
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|++.||.. .++|..|+|+.+.|+.+||+.|.+...-+.+..+|..+|+. | +|+.||++|||..||.|++++..
T Consensus 1 M~I~Vk~~-~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~-L---~D~~tL~~~~I~~gsti~l~~rl 73 (128)
T 3u5e_m 1 MQIFVKTL-TGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQ-L---EDGRTLSDYNIQKESTLHLVLRL 73 (128)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CEEEEEeC-CCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEE-C---CCCCchhhhccCCCCEEEEEEEc
Confidence 89999983 46788999999999999999999986657788899999974 4 48899999999999999999864
No 67
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=97.58 E-value=8.7e-05 Score=64.57 Aligned_cols=64 Identities=9% Similarity=0.159 Sum_probs=56.3
Q ss_pred ccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 11 KETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 11 ~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
+++..|+|+.+.|+.+||+.|.+...-+.+..+|.++|+ .| +|+.+|++|||..|+.|++++.-
T Consensus 45 G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk-~L---~D~~tL~~y~i~~g~~i~lv~rl 108 (115)
T 1we7_A 45 GQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGI-FI---KDSNSLAYYNMASGAVIHLALKE 108 (115)
T ss_dssp SEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTE-EE---CTTSBHHHHTCCSSCEEEEEECC
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCE-EC---CCCCCHHHCCCCCCCEEEEEEEc
Confidence 578899999999999999999998766888899999998 34 37899999999999999999853
No 68
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=97.56 E-value=0.00011 Score=65.24 Aligned_cols=73 Identities=18% Similarity=0.276 Sum_probs=62.4
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|++.||.. .+++..++++.+.|+.+||..|.+...-+.+..+|..+|| .| +|+.||++|||..|+-|++++..
T Consensus 77 ~~i~Vk~~-~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~-~L---~d~~tL~~~~i~~~~~i~l~~r~ 149 (152)
T 3b08_A 77 MQIFVKTL-TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK-QL---EDGRTLSDYNIQKESTLHLVLRL 149 (152)
T ss_dssp EEEEEEES-SSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTE-EC---CTTSBTGGGTCCTTCEEEEEECC
T ss_pred cceeeeec-CCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCE-EC---CCCCCHHHcCCCCCCEEEEEEec
Confidence 57778863 4578899999999999999999998766788899999998 44 37899999999999999999864
No 69
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=97.55 E-value=9.9e-05 Score=68.08 Aligned_cols=73 Identities=18% Similarity=0.273 Sum_probs=63.4
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|++.||.. .++|..|+|..+.|+.+||+.|.+...-+.+..+|..+|+. | +|+.+|++|||..|+-|++++..
T Consensus 21 m~i~Vk~~-~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~-L---~d~~tL~~~~i~~~~~l~l~~~~ 93 (172)
T 3u30_A 21 MQIFVKTL-TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-L---EDGRTLSDYNIQKESTLHLVLRL 93 (172)
T ss_dssp EEEEEEET-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEE-C---CTTCBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEeC-CCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCcc-c---cccCCHhHcCCcccceeeeeecc
Confidence 78899952 56889999999999999999999987668888899999964 4 47899999999999999999863
No 70
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.53 E-value=0.00017 Score=60.87 Aligned_cols=74 Identities=23% Similarity=0.374 Sum_probs=60.4
Q ss_pred eeeeeec--ccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCC------CCCCCCCcccccccccccCCeEE
Q 040442 2 KLRLRSL--ENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKD------ELHASSPPESLHSLGVTAGDLIF 73 (522)
Q Consensus 2 KLRvR~~--~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd------~L~~~~~~~tL~slGIvSGDLI~ 73 (522)
+|+|+.- ..++.+.+.||.+.|+++||..|.+...-++...+|.++.++ +| .+|..+|.+|||.+||-|+
T Consensus 11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L--~~d~~~L~~y~i~~G~~I~ 88 (97)
T 1wjn_A 11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIEL--ENDLQPLQFYSVENGDCLL 88 (97)
T ss_dssp EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEEC--CCSSSBSGGGTCCTTCEEE
T ss_pred EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeecc--CCCcccHhhcCCCCCCEEE
Confidence 4556642 456788888998999999999999998778888999998542 24 3789999999999999999
Q ss_pred EecC
Q 040442 74 YSRD 77 (522)
Q Consensus 74 ~~l~ 77 (522)
|.-.
T Consensus 89 V~d~ 92 (97)
T 1wjn_A 89 VRWS 92 (97)
T ss_dssp EECC
T ss_pred EEec
Confidence 9864
No 71
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=97.50 E-value=0.00014 Score=63.31 Aligned_cols=74 Identities=20% Similarity=0.258 Sum_probs=59.8
Q ss_pred Ceeeeeeccc-ccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCccccccccc-ccCCeEEEecCC
Q 040442 1 MKLRLRSLEN-KETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGV-TAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~-~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGI-vSGDLI~~~l~~ 78 (522)
||..|+-..+ +.++.|+|..+.|.++||+.+.+..--+++.-+|...|+ |. +|+.||.+||| ..||-||+++-.
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggk--ll--~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQR--LA--RDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTE--EE--CTTCBTGGGTCCSTTCEEEEEECC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCe--Ec--cCcCcHHHcCCCCCCCEEEEEEEe
Confidence 4455555443 479999999999999999999999766777667776666 54 48999999999 599999999854
No 72
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=97.48 E-value=8.7e-05 Score=63.62 Aligned_cols=71 Identities=13% Similarity=0.148 Sum_probs=59.2
Q ss_pred Ceeeeeecccc-cceeccCCCCcchHHHHHHHhhhcC--CCCCceEEEecCCCCCCCCCCccccccc--ccccCCeEEEe
Q 040442 1 MKLRLRSLENK-ETLRLEVPSSCTLHELGETLSQLIS--SSPSSLRFSLNRKDELHASSPPESLHSL--GVTAGDLIFYS 75 (522)
Q Consensus 1 MKLRvR~~~~~-~T~rlevp~~~TL~eLr~~l~~~l~--~s~~~~~lSLN~kd~L~~~~~~~tL~sl--GIvSGDLI~~~ 75 (522)
|++.||....+ .++.|+|+.+.|..+||+.|++.+. ++.+..+|-.+||- | .|+.||++| ||..|+-|+++
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~-L---~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRL-L---PDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEE-E---CTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEE-C---CCCCCHHHHhcCCCCCCEEEeC
Confidence 78999986554 3788999988999999999999763 35578899999983 3 288999999 99999999874
No 73
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.47 E-value=0.00022 Score=63.00 Aligned_cols=73 Identities=18% Similarity=0.210 Sum_probs=60.3
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhc--------CCCCCceEEEecCCCCCCCCCCcccccccccccCCe-
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLI--------SSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDL- 71 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l--------~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDL- 71 (522)
|+++||.+. ++|..|||..+.|..+||+.|.+.. ..+++..+|-.+|| .| +|+.||++|||..||.
T Consensus 17 m~I~vKtl~-G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK-~L---eD~~TL~~y~I~~~~~~ 91 (116)
T 1wgh_A 17 INLRLILVS-GKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGR-FL---HGNVTLGALKLPFGKTT 91 (116)
T ss_dssp EEEEEECSS-SCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTE-EE---CSSCBTTTTTCCSSCEE
T ss_pred EEEEEEeCC-CCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCc-CC---CCCCcHHHcCCCCCCce
Confidence 788999754 5999999999999999999999842 12577899999999 34 3889999999999987
Q ss_pred -EEEecCC
Q 040442 72 -IFYSRDP 78 (522)
Q Consensus 72 -I~~~l~~ 78 (522)
||+++.+
T Consensus 92 tlhLvlr~ 99 (116)
T 1wgh_A 92 VMHLVARE 99 (116)
T ss_dssp EEEEEECS
T ss_pred EEEEEccC
Confidence 6667655
No 74
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=97.43 E-value=2e-05 Score=72.69 Aligned_cols=73 Identities=19% Similarity=0.282 Sum_probs=0.0
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|++.||.+ .+++..|+|+.+.|+.+|++.|.+...-+.+..+|..+|+. | +|+.||++|||..|+.|++++..
T Consensus 1 MqI~VK~l-~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~-L---~D~~tL~dygI~~gstL~Lvlrl 73 (152)
T 3u5c_f 1 MQIFVKTL-TGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQ-L---EDGRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CEEEEEeC-CCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEE-c---cccCcHHHcCCCCCCEEEEEeec
Confidence 89999985 46788999999999999999999987657788899999975 4 37899999999999999999964
No 75
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.43 E-value=0.00012 Score=63.27 Aligned_cols=70 Identities=9% Similarity=0.043 Sum_probs=60.1
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEe
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYS 75 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~ 75 (522)
|++-|+.. .+++.+|+|..+.|.++||+.|++.-.-+.+..+|..+||- | .|+.||++|||..|+-|+++
T Consensus 29 m~I~VKtl-~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~-L---~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 29 IEVVCNDR-LGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTI-F---KDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp EEEEEECS-SSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEE-C---CSSCBHHHHTCCTTEEEEEE
T ss_pred EEEEEECC-CCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEE-C---CCCCCHHHcCCCCCCEEEEE
Confidence 66777762 25899999999999999999999997668889999999983 4 37999999999999998876
No 76
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=97.42 E-value=0.00015 Score=69.21 Aligned_cols=73 Identities=16% Similarity=0.237 Sum_probs=63.5
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|++.||.+ .++|..|+|..+.|+.+||+.|.+...-+.+..+|..+||. | +|+.||++|||..|+-|++++.-
T Consensus 106 MqI~VKtl-~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~-L---~D~~tL~dygI~~gstI~Lvlrl 178 (189)
T 3q3f_A 106 GQIFVKTL-TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-L---EDGRTLSDYNIQKESTLHLVLRL 178 (189)
T ss_dssp EEEEEECT-TSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEE-C---CTTCBGGGGTCCTTCEEEECCCC
T ss_pred eeeeeecC-CCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEE-C---CCCCCHHHCCCCCCCEEEEEEEc
Confidence 88999984 46788999999999999999999987667788899999974 4 37899999999999999999863
No 77
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.42 E-value=3.1e-05 Score=75.99 Aligned_cols=48 Identities=31% Similarity=0.531 Sum_probs=43.6
Q ss_pred CccccCCcHHHHHHHhccCCccchhhHHHhhHHHHHHhcCcHHHHHHH
Q 040442 369 PACWTHLPTELKLKLLECLPGVDVAKMECVSRDMRYLASNNELWRQKF 416 (522)
Q Consensus 369 pp~l~~LP~ELll~ILs~Ld~~dL~~ls~vCr~lr~LasDd~LWr~lc 416 (522)
.+.|..||+|++.+||++|+.+|+++++.|||+|+.++.+..+|+.+-
T Consensus 6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~ 53 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLD 53 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEE
T ss_pred cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeec
Confidence 357899999999999999999999999999999999999999998643
No 78
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.41 E-value=0.00018 Score=63.91 Aligned_cols=67 Identities=18% Similarity=0.198 Sum_probs=59.4
Q ss_pred ecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecC
Q 040442 7 SLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRD 77 (522)
Q Consensus 7 ~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~ 77 (522)
+...++..-+++..++|++|||++|+....-+++..+|..+|| .| . |++||.+|||..|.-||++..
T Consensus 22 l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GK-iL-K--D~eTL~~~gIk~g~TIhLvi~ 88 (118)
T 2daf_A 22 LIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGK-IL-K--NNETLVQHGVKPQEIVQVEIF 88 (118)
T ss_dssp ETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTE-EE-C--SSCCHHHHSCCSSCEEEEEEE
T ss_pred EcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCe-Ec-C--CcchHHHcCCCCCCEEEEEEe
Confidence 3345778888999999999999999999877999999999999 55 2 899999999999999999985
No 79
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=97.40 E-value=0.00031 Score=59.98 Aligned_cols=73 Identities=12% Similarity=0.089 Sum_probs=59.4
Q ss_pred eeeeee-cccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCC-----CCCCCCCcccccccccccCCeEEEe
Q 040442 2 KLRLRS-LENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKD-----ELHASSPPESLHSLGVTAGDLIFYS 75 (522)
Q Consensus 2 KLRvR~-~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd-----~L~~~~~~~tL~slGIvSGDLI~~~ 75 (522)
+|.|.+ ..++++..++|+.+.|+++||+.|.+...-+++.-+|.++||+ .|. +|+.+|.+|||..|+-|+++
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~--~D~~tL~~Y~I~~g~~Ihlv 93 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLS--DDSRPLGFFSPFDGFRLHII 93 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSS--GGGSCHHHHCCCSCCEEEEE
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceec--CCcCCHHHCCCCCCCEEEEE
Confidence 455665 1122478889999999999999999998778999999999974 233 58899999999999999987
Q ss_pred c
Q 040442 76 R 76 (522)
Q Consensus 76 l 76 (522)
=
T Consensus 94 d 94 (97)
T 2kj6_A 94 D 94 (97)
T ss_dssp E
T ss_pred e
Confidence 4
No 80
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=97.40 E-value=0.00026 Score=60.61 Aligned_cols=74 Identities=23% Similarity=0.253 Sum_probs=59.5
Q ss_pred Ceeeeeecccc-cceeccCCCCcchHHHHHHH-hhhcCCCCCceEEEecCCCCCCCCCCccccccccc-ccCCeEEEecC
Q 040442 1 MKLRLRSLENK-ETLRLEVPSSCTLHELGETL-SQLISSSPSSLRFSLNRKDELHASSPPESLHSLGV-TAGDLIFYSRD 77 (522)
Q Consensus 1 MKLRvR~~~~~-~T~rlevp~~~TL~eLr~~l-~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGI-vSGDLI~~~l~ 77 (522)
|++-||.+..+ -++.|+|+.+.|.++||+.| ++.-.-+.+..+|-++||- | .|+.+|++||| ..|+-|++++.
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~-L---~D~~tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKV-L---HDNLFLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEE-E---CTTCBGGGSCCBTTBCEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEE-C---cCcCCHHHcCcCCCCCEEEEEEe
Confidence 78889986554 25666888999999999999 5443337788999999974 4 37899999999 99999999985
Q ss_pred C
Q 040442 78 P 78 (522)
Q Consensus 78 ~ 78 (522)
.
T Consensus 96 k 96 (98)
T 4a20_A 96 P 96 (98)
T ss_dssp C
T ss_pred C
Confidence 3
No 81
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=97.39 E-value=0.00025 Score=62.55 Aligned_cols=73 Identities=26% Similarity=0.401 Sum_probs=59.7
Q ss_pred Ceeeeeeccccc--ceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCC-----CCCCCCCcccccccccccCCeEE
Q 040442 1 MKLRLRSLENKE--TLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKD-----ELHASSPPESLHSLGVTAGDLIF 73 (522)
Q Consensus 1 MKLRvR~~~~~~--T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd-----~L~~~~~~~tL~slGIvSGDLI~ 73 (522)
|+|.|++ +.. ..-++|+.+.|+++||+.|.+...-+++..+|.++|++ .|. +|+.+|.+|||.+|+-||
T Consensus 7 v~l~V~~--~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~--~D~~tL~~y~i~~g~~ih 82 (122)
T 1t0y_A 7 YDLEITT--NATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELT--DGAKSLKDLGVRDGYRIH 82 (122)
T ss_dssp EEEEEEE--SSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECC--CCSSBTTTTTCCSSEEEE
T ss_pred EEEEEEE--CCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccC--CCcCCHHHCCCCCCCEEE
Confidence 3566666 444 57788888999999999999997778999999999853 243 488999999999999999
Q ss_pred EecC
Q 040442 74 YSRD 77 (522)
Q Consensus 74 ~~l~ 77 (522)
++..
T Consensus 83 vvd~ 86 (122)
T 1t0y_A 83 AVDV 86 (122)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9963
No 82
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=97.38 E-value=0.00019 Score=64.21 Aligned_cols=73 Identities=18% Similarity=0.220 Sum_probs=59.8
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcC--------CCCCceEEEecCCCCCCCCCCcccccccccccCCe-
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLIS--------SSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDL- 71 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~--------~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDL- 71 (522)
|+++||.+ .++|..|||+.+.|..+||+.|..... .+++..+|-.+|| -| +|+.||++|||..||.
T Consensus 18 m~I~vktl-~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK-~L---eD~~TL~~y~I~~~~~~ 92 (125)
T 2gow_A 18 INLRLILV-SGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGR-FL---HGNVTLGALKLPFGKTT 92 (125)
T ss_dssp EEEEEECT-TSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSS-EE---ESSCBTGGGCCCTTSEE
T ss_pred EEEEEEeC-CCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCc-CC---CCCCcHHHcCCCCCCce
Confidence 67888875 458999999999999999999998431 2466899999999 34 3889999999999996
Q ss_pred -EEEecCC
Q 040442 72 -IFYSRDP 78 (522)
Q Consensus 72 -I~~~l~~ 78 (522)
|++++.+
T Consensus 93 tlhlv~r~ 100 (125)
T 2gow_A 93 VMHLVARE 100 (125)
T ss_dssp EEEEEECS
T ss_pred EEEEEecC
Confidence 5777655
No 83
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.36 E-value=0.00017 Score=62.15 Aligned_cols=72 Identities=14% Similarity=0.280 Sum_probs=58.4
Q ss_pred eeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEE-ecCCCCCCCCCCcccccccccccCCeEEEecCCC
Q 040442 2 KLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFS-LNRKDELHASSPPESLHSLGVTAGDLIFYSRDPY 79 (522)
Q Consensus 2 KLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lS-LN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~~ 79 (522)
+++++. .+++..|+|+.+.|..+||+.|.+...=+++.-+|- +.++. | +|+.+|++|||.+|+-|+++|++.
T Consensus 11 ~~~vk~--~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L---~D~~tLs~~~I~~gstL~lvl~~~ 83 (100)
T 2dzm_A 11 DFRVEY--RDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-V---EDSTVLKSLHLPKNNSLYVLTPDL 83 (100)
T ss_dssp EEEEEC--SSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-C---CTTSBHHHHCCCSEEEEEECCSSS
T ss_pred EEEEEe--CCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-C---CCcCCHHHcCCCCCCEEEEEecCC
Confidence 567777 889999999999999999999999976555654553 23333 5 378999999999999999999874
No 84
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.32 E-value=0.0003 Score=58.82 Aligned_cols=72 Identities=15% Similarity=0.283 Sum_probs=55.2
Q ss_pred Ceeeeeecccccc-eec-cCCCCcchHHHHHHHhhhcCC-CCCceEEEecCCCCCCCCCCcccccccccccCCeEEE
Q 040442 1 MKLRLRSLENKET-LRL-EVPSSCTLHELGETLSQLISS-SPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFY 74 (522)
Q Consensus 1 MKLRvR~~~~~~T-~rl-evp~~~TL~eLr~~l~~~l~~-s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~ 74 (522)
|++-|+....++. ..| ||+.++|+.+||+.|++.... +++..+|.+..+.-.+ +|+.||++|||.+|+-|+|
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L--~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSL--KDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCC--CTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCc--CCCCCHHHcCCCCCCEEEE
Confidence 7888887433333 357 999999999999999996433 6777888887333344 3889999999999998776
No 85
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=97.32 E-value=0.00077 Score=70.30 Aligned_cols=73 Identities=12% Similarity=0.235 Sum_probs=60.7
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhc---CCCCCceEEEecCCCCCCCCCCcccccccccccCCeE-EEec
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLI---SSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLI-FYSR 76 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l---~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI-~~~l 76 (522)
||+.||.+ .+++..|+|..+.|+.+||..|.... .-+.+..+|..+|| .| +|+.+|.+|||..|+.| +++.
T Consensus 8 M~I~VKtl-~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK-~L---~D~~tL~dygI~~gstIv~lv~ 82 (368)
T 1oqy_A 8 VTITLKTL-QQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGK-IL---SDDVPIRDYRIDEKNFVVVMVT 82 (368)
T ss_dssp CCEEEEET-TTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSS-EE---CSSSBTTTTCCCTTSCEEEEEE
T ss_pred EEEEEEeC-CCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCe-ec---CCcCCHHHcCCCCCCEEEEEEe
Confidence 89999995 36788999999999999999999953 23778899999998 34 27899999999999988 6665
Q ss_pred CC
Q 040442 77 DP 78 (522)
Q Consensus 77 ~~ 78 (522)
..
T Consensus 83 k~ 84 (368)
T 1oqy_A 83 KT 84 (368)
T ss_dssp CC
T ss_pred cC
Confidence 44
No 86
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=97.30 E-value=0.00036 Score=63.20 Aligned_cols=73 Identities=16% Similarity=0.194 Sum_probs=62.1
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|++.||.. .+++..++|..+.|..+||+.|.....-+.+..+|..+|+. | +|+.||++|||..|+-|++++.-
T Consensus 82 m~i~vk~~-~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~-L---~d~~tL~~y~i~~g~~l~l~~rl 154 (159)
T 3rt3_B 82 LSILVRNN-KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKP-L---EDQLPLGEYGLKPLSTVFMNLRL 154 (159)
T ss_dssp EEEEEECT-TSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEE-C---CTTSBGGGGTCCTTCEEEEEECC
T ss_pred EEEEEECC-CCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCee-c---CCCCCHHHcCCCCCCEEEEEEec
Confidence 66777773 45788999999999999999999887667888999999964 4 37899999999999999999863
No 87
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=97.26 E-value=0.00029 Score=71.79 Aligned_cols=72 Identities=18% Similarity=0.287 Sum_probs=62.0
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRD 77 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~ 77 (522)
|++.||.. .+++..|+|+.+.|+.+||+.|.+...-+.+..+|.++||. | +|+.+|++|||..|+.|++++.
T Consensus 234 MqI~VKtl-~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~-L---~D~~TLsdygI~~gstL~LvlR 305 (307)
T 3ai5_A 234 MQIFVKTL-TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-L---EDGRTLSDYNIQKESTLHLVLR 305 (307)
T ss_dssp EEEEEECT-TSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEE-C---CTTSBTGGGTCCTTCEEEEEC-
T ss_pred EEEEEEeC-CCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCee-c---CCCCCHHHcCCCCCCEEEEEEe
Confidence 78889984 35688899999999999999999987768888999999983 4 3789999999999999999874
No 88
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=97.24 E-value=9e-05 Score=63.70 Aligned_cols=67 Identities=13% Similarity=0.296 Sum_probs=41.1
Q ss_pred ccCCcHHHHHHHhccCCccchhhHHHhhHHHHHHhcCcHHHHHHHHhhcCCCCCCCCCCChHHHHHHHHH
Q 040442 372 WTHLPTELKLKLLECLPGVDVAKMECVSRDMRYLASNNELWRQKFVEEFGGPADAQGKTNWKERFVFNWE 441 (522)
Q Consensus 372 l~~LP~ELll~ILs~Ld~~dL~~ls~vCr~lr~LasDd~LWr~lc~~df~~~~~~~~~~~WK~lY~~~~~ 441 (522)
-+..|-+|+.-||..-.++.|.++..-|-.+ +-..|.||+.+|.++|+.... ....+||++|.+...
T Consensus 10 ~~~~Py~lL~PVLek~tp~QL~~IE~~nP~L--~~dTdeLWk~~c~rdF~~~~p-~e~esWRelY~rl~~ 76 (97)
T 4hfx_A 10 HMGVPYSVLEPVLERCTPDQLYRIEEYNHVL--IEETDQLWKVHCHRDFKEERP-EEYESWREMYLRLQD 76 (97)
T ss_dssp ----------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCSCC-CSSSCHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHccCCHHHHHHHHHhCccc--chhhHHHHHHHHHhHCcccCC-CCCCCHHHHHHHHHH
Confidence 4667899999999999999999999998733 335689999999999997643 446899999999886
No 89
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=97.23 E-value=0.00038 Score=59.11 Aligned_cols=72 Identities=10% Similarity=0.178 Sum_probs=57.5
Q ss_pred eeeeeecc-cccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecC--CC--CCCCCCCcccccccccccCCeEEEe
Q 040442 2 KLRLRSLE-NKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNR--KD--ELHASSPPESLHSLGVTAGDLIFYS 75 (522)
Q Consensus 2 KLRvR~~~-~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~--kd--~L~~~~~~~tL~slGIvSGDLI~~~ 75 (522)
+|.|+.-. ++++..++|+.+.|+.+||+.|.+...-+++.-+|.+++ |- .|. +|+.+|++|||.+|+-|+++
T Consensus 17 ~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~--~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 17 KVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMD--NNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp EEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECC--CTTSBHHHHCCSSSCEEEEE
T ss_pred EEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeC--CCCCCHhHCCcCCCCEEEEE
Confidence 46677611 124788899989999999999999987788888999884 41 353 48999999999999999986
No 90
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.00083 Score=56.18 Aligned_cols=75 Identities=23% Similarity=0.243 Sum_probs=59.1
Q ss_pred Ceeeeeecccc-cceeccCCCCcchHHHHHHH-hhhcCCCCCceEEEecCCCCCCCCCCccccccccc-ccCCeEEEecC
Q 040442 1 MKLRLRSLENK-ETLRLEVPSSCTLHELGETL-SQLISSSPSSLRFSLNRKDELHASSPPESLHSLGV-TAGDLIFYSRD 77 (522)
Q Consensus 1 MKLRvR~~~~~-~T~rlevp~~~TL~eLr~~l-~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGI-vSGDLI~~~l~ 77 (522)
|++-||.+..+ -++.+|++.+.|..+||+.| +..-.-+.+..+|-.+||- | .|+.||++||| ..|.-|.+.+.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~-L---~D~~tL~~y~I~~~~stl~v~~~ 77 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKV-L---HDNLFLSDLKVTPANSTITVMIK 77 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEE-C---CTTCBHHHHCCCGGGCEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEE-C---cCcCCHHHcCCCCCCCEEEEEcC
Confidence 89999984333 34444566889999999999 5554448888999999974 4 38899999999 68999999997
Q ss_pred CC
Q 040442 78 PY 79 (522)
Q Consensus 78 ~~ 79 (522)
|.
T Consensus 78 ~~ 79 (87)
T 2lxa_A 78 PN 79 (87)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 91
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=97.02 E-value=0.00094 Score=59.90 Aligned_cols=74 Identities=12% Similarity=0.199 Sum_probs=60.0
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcC-------CCCCceEEEecCCCCCCCCCCcccccccccccCCe--
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLIS-------SSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDL-- 71 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~-------~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDL-- 71 (522)
|+|+||....+....++++.+.|..+||+.|..... ++++..+|-.+|| -| +|+.||++|+|..||.
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK-~L---eD~~TLsdy~I~~~~~~~ 92 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGK-VL---ENSKTVKDYRSPVSNLAG 92 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTE-EC---CTTSBGGGGSCCTTSCTT
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCe-EC---cCCCcHHHcCCCcCCccC
Confidence 789999977776557999999999999999965432 2346899999999 34 3899999999999975
Q ss_pred ----EEEecCC
Q 040442 72 ----IFYSRDP 78 (522)
Q Consensus 72 ----I~~~l~~ 78 (522)
|++++..
T Consensus 93 ~v~tmhlVlrl 103 (126)
T 1se9_A 93 AVTTMHVIIQA 103 (126)
T ss_dssp CCEEEEEEECC
T ss_pred CcEEEEEEecc
Confidence 7777754
No 92
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.01 E-value=0.00082 Score=57.99 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=54.7
Q ss_pred ccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEec
Q 040442 11 KETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSR 76 (522)
Q Consensus 11 ~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l 76 (522)
+++..|+|+.+.|..+||+.|++...-+++..+|-.|||- | .|+.||++|||..|.-|.|+.
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKi-L---~D~~TL~~y~I~~gsti~vl~ 90 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQ-L---QLGKTLEEQGVAHNVKAMVLE 90 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEE-C---CTTSBHHHHTCCSSEEEEEEC
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeE-C---CCCCcHHHcCCCCCCEEEEEE
Confidence 4788999999999999999999998768889999999994 3 388999999999999996665
No 93
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=96.97 E-value=0.00084 Score=61.79 Aligned_cols=72 Identities=17% Similarity=0.256 Sum_probs=59.8
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRD 77 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~ 77 (522)
|.+.||. ..++|..++|..+.|..+||..|.....-+.+..+|..+|+. | +|..||++|||..|+-|++++.
T Consensus 97 ~~i~Vk~-~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~-L---~D~~tL~~y~i~~g~tl~l~~r 168 (172)
T 3u30_A 97 MQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-L---EDGRTLSDYNIQKESTLHLVLR 168 (172)
T ss_dssp EEEEEEE-SSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEE-C---CTTSBSGGGTCCTTCEEEECC-
T ss_pred ccceeec-ccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCcc-C---CCCCcHHHhCCCCCCEEEEEEe
Confidence 3445665 356889999999999999999999997667888999999974 4 3789999999999999999875
No 94
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=96.86 E-value=0.0016 Score=53.24 Aligned_cols=71 Identities=25% Similarity=0.362 Sum_probs=60.6
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEe
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYS 75 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~ 75 (522)
|+|+|+..+.++++.+.|--+.+|+.|.+..++...-+.++++|..+|+. | .+.+|..+||+..||.|.|.
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~-l---~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTK-L---SGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEE-C---CSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEE-c---CCCCCHHHcCCCCCCEEEEe
Confidence 57788875554688999988999999999999998767778999999984 5 37899999999999999985
No 95
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=96.86 E-value=0.0013 Score=58.38 Aligned_cols=69 Identities=20% Similarity=0.264 Sum_probs=60.3
Q ss_pred eeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCccccccccccc-------CCeEEEe
Q 040442 3 LRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTA-------GDLIFYS 75 (522)
Q Consensus 3 LRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvS-------GDLI~~~ 75 (522)
||||- .|-|+-|++..+.|+.+||+.|.....-+.+.-+|-.+||- | +|+.||++|||.+ |.-|+++
T Consensus 5 l~Ikr--~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~-L---eD~kTL~dy~I~~~ta~~q~~atl~Lv 78 (118)
T 4ajy_B 5 LMIRR--HKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQL-L---DDGKTLGECGFTSQTARPQAPATVGLA 78 (118)
T ss_dssp EEEEE--BTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEE-C---CTTSBTTTTTCCGGGSBTTBCEEEEEE
T ss_pred EEEec--CCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeE-C---CCcCCHHHcCCCcCcccCCCCCEEEEE
Confidence 56666 78899999999999999999999987667888888888863 3 4899999999999 9999999
Q ss_pred cC
Q 040442 76 RD 77 (522)
Q Consensus 76 l~ 77 (522)
+.
T Consensus 79 lr 80 (118)
T 4ajy_B 79 FR 80 (118)
T ss_dssp EC
T ss_pred Ee
Confidence 85
No 96
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=96.55 E-value=0.0063 Score=50.58 Aligned_cols=74 Identities=11% Similarity=0.083 Sum_probs=56.7
Q ss_pred eeeeeecccc-cceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCC-----CCCCCCCcccccccccccCCeEEEe
Q 040442 2 KLRLRSLENK-ETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKD-----ELHASSPPESLHSLGVTAGDLIFYS 75 (522)
Q Consensus 2 KLRvR~~~~~-~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd-----~L~~~~~~~tL~slGIvSGDLI~~~ 75 (522)
||.|.+--++ +..-+.++-+.|.++||+.|.....-+++.-+|.+++++ .+. +|+.+|++|||..|.-||++
T Consensus 4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l--~d~~tL~~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNM--ANDKQLGYYQCRDEFVIHVV 81 (86)
T ss_dssp EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSC--CTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEc--CCCCCHHHCCCCCCCEEEEE
Confidence 4555542233 233566777889999999999987778888899987654 344 58999999999999999998
Q ss_pred cC
Q 040442 76 RD 77 (522)
Q Consensus 76 l~ 77 (522)
-.
T Consensus 82 d~ 83 (86)
T 4b6w_A 82 DL 83 (86)
T ss_dssp EC
T ss_pred eC
Confidence 53
No 97
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=96.55 E-value=0.003 Score=53.45 Aligned_cols=73 Identities=12% Similarity=0.231 Sum_probs=62.7
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|+|+|+.. .++++.+.|-.+.++..|.+..++...-+.++++|..+|+. | ++++|+.+|++..||.|.+++..
T Consensus 8 i~ikVk~~-~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~-l---~~~~Tp~dl~medgD~Idv~~~~ 80 (94)
T 2io1_B 8 INLKVAGQ-DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQP-I---NETDTPAQLEMEDEDTIDVFQQQ 80 (94)
T ss_dssp EEEEEECT-TSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEE-C---CTTCCTTTTTCCTTCEEEEEECC
T ss_pred EEEEEECC-CCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEE-c---CCCCCHHHcCCCCCCEEEEEEec
Confidence 57788863 35678899988999999999999998767788999999985 5 37899999999999999999864
No 98
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=96.48 E-value=0.0045 Score=49.44 Aligned_cols=71 Identities=13% Similarity=0.236 Sum_probs=61.0
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEec
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSR 76 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l 76 (522)
|+|+|+.. .++++.+.+-.+.+++.|.+..++...-+.+++++..+|+. |. +++|..+||+..||.|.+.+
T Consensus 2 i~lkV~~~-~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~-l~---~~~Tp~~l~medgD~Idv~~ 72 (72)
T 1wm3_A 2 INLKVAGQ-DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQP-IN---ETDTPAQLEMEDEDTIDVFQ 72 (72)
T ss_dssp EEEEEECT-TSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEE-CC---TTCCTTTTTCCTTEEEEEEC
T ss_pred EEEEEECC-CCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEE-cC---CCCCHHHcCCCCCCEEEEEC
Confidence 67889873 45688999998999999999999997767788999999985 53 78999999999999999863
No 99
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=96.18 E-value=0.0072 Score=50.91 Aligned_cols=73 Identities=12% Similarity=0.231 Sum_probs=62.3
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|+|+|+.. .++++.+.|-.+.+|..|.+..++...-+.++++|..+|+. | ++++|..+||+..||.|.+.+..
T Consensus 6 i~ikVk~~-~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~-l---~~~~Tp~dl~medgD~Idv~~~q 78 (91)
T 2io0_B 6 INLKVAGQ-DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQP-I---NETDTPAQLEMEDEDTIDVFQQQ 78 (91)
T ss_dssp EEEEEECT-TSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEE-C---CTTCCTTTTTCCTTEEEEEEECC
T ss_pred EEEEEECC-CCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEE-c---CCCCCHHHcCCCCCCEEEEEEec
Confidence 56777762 45688999988999999999999997667788999999985 5 37899999999999999999864
No 100
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=96.14 E-value=0.0068 Score=51.07 Aligned_cols=73 Identities=12% Similarity=0.233 Sum_probs=61.4
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|+|+|+.. .++++.+.|--+.+|+.|.+..++...-+.++++|..+|+. |. +.+|..+||+..||.|.+++.-
T Consensus 18 i~ikV~~~-~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~-l~---~~~Tp~dl~medgD~Idv~~~q 90 (93)
T 2d07_B 18 INLKVAGQ-DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQP-IN---ETDTPAQLEMEDEDTIDVFQQQ 90 (93)
T ss_dssp EEEEEECT-TSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEE-CC---TTCCTTTTTCCTTEEEEEEECC
T ss_pred EEEEEECC-CCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEE-cC---CCCCHHHcCCCCCCEEEEEeec
Confidence 46777763 34678888888889999999999998767779999999985 53 7899999999999999998753
No 101
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=96.13 E-value=0.0069 Score=51.62 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=54.8
Q ss_pred cccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEe
Q 040442 10 NKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYS 75 (522)
Q Consensus 10 ~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~ 75 (522)
.++++++++..+.|.++||+.|+...--+++..+|-.+|+- | .|..||.+|||..|+-|++.
T Consensus 30 ~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~-L---kD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 30 LGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSV-L---KDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp TSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEE-C---CTTSBTGGGTCCTTCEEEEE
T ss_pred CCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEE-c---cCcCCHHHcCCCCCCEEEEE
Confidence 46889999999999999999999998778888999998877 5 38999999999999988763
No 102
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=96.06 E-value=0.0054 Score=62.67 Aligned_cols=73 Identities=7% Similarity=0.091 Sum_probs=59.9
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEE---ecCCCCCCCCCCcccccccccccCCeEEEecC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFS---LNRKDELHASSPPESLHSLGVTAGDLIFYSRD 77 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lS---LN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~ 77 (522)
|++.|+. ++++..|+|+.++|+++||+.|.+...=+++.-.|- .+||. | .|+.+|+++||..|.-|+++..
T Consensus 6 i~i~Vk~--~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~-l---~D~~~L~~~~ik~g~~l~L~gs 79 (320)
T 3shq_A 6 VVVIVKW--SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKT-A---ADNVKISALELKPNFKLMMVGS 79 (320)
T ss_dssp EEEEEEE--TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSB-C---CTTSBTTSSCCC--CEEEEECC
T ss_pred EEEEEEE--CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcc-c---CccccHHHcCCCCCCEEEEEcc
Confidence 5788998 899999999999999999999999876677766666 67763 3 3789999999999999999986
Q ss_pred CC
Q 040442 78 PY 79 (522)
Q Consensus 78 ~~ 79 (522)
+.
T Consensus 80 ~~ 81 (320)
T 3shq_A 80 TE 81 (320)
T ss_dssp CC
T ss_pred ch
Confidence 53
No 103
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=95.95 E-value=0.0015 Score=68.76 Aligned_cols=36 Identities=11% Similarity=0.139 Sum_probs=29.7
Q ss_pred ccccCCcHHHHHHHhccCC-ccchhhHHHhhHHHHHH
Q 040442 370 ACWTHLPTELKLKLLECLP-GVDVAKMECVSRDMRYL 405 (522)
Q Consensus 370 p~l~~LP~ELll~ILs~Ld-~~dL~~ls~vCr~lr~L 405 (522)
+.+..||+|++.+||+||+ .+|+++++.|||+|+.+
T Consensus 4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 5688999999999999999 99999999999999999
No 104
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.75 E-value=0.014 Score=50.43 Aligned_cols=73 Identities=12% Similarity=0.233 Sum_probs=61.7
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|+|+|+.. .++++.+.|--+.+|..|.+...+...-+.++++|..+|+. |. +.+|..+||+..||.|.|++..
T Consensus 25 I~IkVk~~-~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~-l~---~~~Tp~dl~medgD~Idv~~~q 97 (104)
T 1wz0_A 25 INLKVAGQ-DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQP-IN---ETDTPAQLEMEDEDTIDVFQQQ 97 (104)
T ss_dssp EEEEEECS-SSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSB-CC---TTSCTTTTTCCTTEEEEECCCC
T ss_pred EEEEEECC-CCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEE-cC---CCCCHHHcCCCCCCEEEEEEec
Confidence 46777763 34678899988999999999999998767778999999985 53 7899999999999999999864
No 105
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=95.67 E-value=0.0099 Score=49.43 Aligned_cols=63 Identities=19% Similarity=0.224 Sum_probs=55.7
Q ss_pred cccceeccCCCCcchHHHHHHHhhhcCC--CCCc-eEEEecCCCCCCCCCCcccccccccccCCeEEE
Q 040442 10 NKETLRLEVPSSCTLHELGETLSQLISS--SPSS-LRFSLNRKDELHASSPPESLHSLGVTAGDLIFY 74 (522)
Q Consensus 10 ~~~T~rlevp~~~TL~eLr~~l~~~l~~--s~~~-~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~ 74 (522)
+.++..|.+|..-|+.+|.+.|.+++.- +..+ +.+-.-+|..+.. .+++|+.+||+.||+|-+
T Consensus 15 ~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~--~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 15 NGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFS--GECKLSDCGITNGDRLEI 80 (81)
T ss_dssp TCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEE--TTSBTGGGTCCTTCEEEE
T ss_pred CCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEc--CCCEEeeCCcCCCCEEEE
Confidence 4589999999999999999999999854 3334 8999999999996 899999999999999976
No 106
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=95.50 E-value=0.016 Score=50.32 Aligned_cols=72 Identities=17% Similarity=0.308 Sum_probs=62.1
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|+|+|+. .++++.+.|--+.+|..|.+..++...-+.++++|..+|+. |. +.+|..+||+..||.|.+.+..
T Consensus 32 I~IkV~~--~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~r-l~---~~~Tp~dl~medgD~Idv~~~q 103 (106)
T 2eke_C 32 INLKVSD--GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIR-IQ---ADQTPEDLDMEDNDIIEAHREQ 103 (106)
T ss_dssp EEEEEEC--SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEE-CC---TTCCTTTTTCCTTEEEEEEECC
T ss_pred EEEEEec--CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeE-cC---CCCCHHHcCCCCCCEEEEEeec
Confidence 5677877 67888899988899999999999987667779999999984 53 7899999999999999998853
No 107
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=95.21 E-value=0.023 Score=49.58 Aligned_cols=73 Identities=16% Similarity=0.260 Sum_probs=61.9
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|+|+|+.. .++++.+.|--+.+|..|.+..++...-+.++++|..+|+. |. +.+|..+||+..||.|.+++..
T Consensus 27 I~IkVk~~-~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~-L~---~~~Tp~dl~mEDgD~Idv~~~q 99 (110)
T 2k8h_A 27 VAVKVVNA-DGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTP-ID---ETKTPEELGMEDDDVIDAMVEQ 99 (110)
T ss_dssp EEEEEEET-TSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCB-CC---SSSHHHHHHCSSEEEEEEECCC
T ss_pred EEEEEECC-CCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEE-cC---CCCCHHHcCCCCCCEEEEEEcc
Confidence 56777763 34678899988999999999999997767779999999984 53 7899999999999999999865
No 108
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=94.92 E-value=0.045 Score=44.87 Aligned_cols=71 Identities=18% Similarity=0.246 Sum_probs=54.0
Q ss_pred eeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEec--CCCCCCCCCCcccccccccccCCeEEEe
Q 040442 2 KLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLN--RKDELHASSPPESLHSLGVTAGDLIFYS 75 (522)
Q Consensus 2 KLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN--~kd~L~~~~~~~tL~slGIvSGDLI~~~ 75 (522)
+||||. -.+.++.-.++.+.||++|++.|... ......|.|.-+ +| .|+..|.+.||.++|++.+..|+|-
T Consensus 9 ~i~iRl-pdG~r~~~~F~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk-~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 9 KLRIRT-PSGEFLERRFLASNKLQIVFDFVASK-GFPWDEYKLLSTFPRR-DVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp EEEEEC-TTSCEEEEEEETTSBHHHHHHHHHHT-TCCTTTEEEECSSSCC-BGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred EEEEEC-CCCCEEEEEeCCCCCHHHHHHHHHHc-CCCCCCeEEEeCCCCC-CCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 688888 34555666777789999999999873 234456887754 44 5654467899999999999999875
No 109
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=94.72 E-value=0.074 Score=44.11 Aligned_cols=69 Identities=28% Similarity=0.383 Sum_probs=58.3
Q ss_pred eeeeecccc-cceeccCCCCcchHHHHHHHhhhcCCCCC-ceEEEecCCCCCCCCCCcccccccccccCCeEEEecC
Q 040442 3 LRLRSLENK-ETLRLEVPSSCTLHELGETLSQLISSSPS-SLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRD 77 (522)
Q Consensus 3 LRvR~~~~~-~T~rlevp~~~TL~eLr~~l~~~l~~s~~-~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~ 77 (522)
|-+|+ +| +-++++|+-+.|+.+|-.+-..+-.=+.+ +|+|...| |-| ++++|+++|++..||+|-+++.
T Consensus 12 ~~~~~--~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDG-dRL---dp~~tp~DlemeD~D~IDvmL~ 82 (82)
T 3goe_A 12 LLLRS--SKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEG-EWL---DPNDQVQSTELEDEDQVSVVLD 82 (82)
T ss_dssp EEEEE--SSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETT-EEC---CTTSBGGGSSCCTTCEEEEEC-
T ss_pred Hhhhc--cCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcC-ccc---CccCChhhhCCcCCceeeeeeC
Confidence 55777 66 88999999999999999998888764555 89999998 456 5999999999999999998863
No 110
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=94.48 E-value=0.084 Score=45.67 Aligned_cols=75 Identities=12% Similarity=0.204 Sum_probs=57.1
Q ss_pred eeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEec-CCCCCCCCCCcccccccccccCCeEEEecC
Q 040442 2 KLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLN-RKDELHASSPPESLHSLGVTAGDLIFYSRD 77 (522)
Q Consensus 2 KLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN-~kd~L~~~~~~~tL~slGIvSGDLI~~~l~ 77 (522)
+||||.- .+.++.-.++.+.||++|++.|..........|.|.-+ -+-.|...|...||.++|++..-.|+|.-.
T Consensus 15 ~IqIRlp-dG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 15 RIQFRLP-DGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp EEEEECS-SSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred EEEEECC-CCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 6888884 45678888888999999999999986444456777664 233566546789999999999877777653
No 111
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=93.87 E-value=0.016 Score=61.11 Aligned_cols=33 Identities=9% Similarity=0.052 Sum_probs=31.5
Q ss_pred cCCcHHHHHHHhccC-CccchhhHHHhhHHHHHH
Q 040442 373 THLPTELKLKLLECL-PGVDVAKMECVSRDMRYL 405 (522)
Q Consensus 373 ~~LP~ELll~ILs~L-d~~dL~~ls~vCr~lr~L 405 (522)
..||+|++.+||+|| +.+|+++++.|||+|+.+
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 479999999999999 799999999999999988
No 112
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=93.13 E-value=0.14 Score=45.02 Aligned_cols=72 Identities=21% Similarity=0.325 Sum_probs=59.6
Q ss_pred eeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 2 KLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 2 KLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
+|+|+..+ +..+.+.+--+.+|..|.....+...-+.+++++-++|+ .|. +.+|..+||+..||.|.|.+..
T Consensus 42 ~LKV~~qd-g~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~-rI~---~~~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 42 KLKVIGQD-SSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQ-RIA---DNHTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp EEEEECTT-SCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTE-ECC---TTCCTTTTTCCTTCEEEEEECC
T ss_pred EEEEEcCC-CCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCe-ECC---CCCCHHHcCCCCCCEEEEEeec
Confidence 56666632 345788888888999999999999877888999999998 463 7899999999999999998753
No 113
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=93.10 E-value=0.017 Score=55.11 Aligned_cols=68 Identities=15% Similarity=0.132 Sum_probs=0.0
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|++-||.+ .++|+.|+|..+.|+.+|++.|.+...-+.+..+|..+|+ .| +|+.||+ .|+-|++++..
T Consensus 1 MqI~VKtL-~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK-~L---eD~~TLs-----~~STLhLvlRL 68 (189)
T 2xzm_9 1 MQVQVKTL-EGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGF-IA---PNTELVT-----DDVTYYLSLKL 68 (189)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CEEEEEcC-CCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCe-EC---CCCCccc-----CCCEEEEEEec
Confidence 88999975 4689999999999999999999998655788899999997 45 2788888 89999999863
No 114
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=88.45 E-value=0.63 Score=41.14 Aligned_cols=72 Identities=17% Similarity=0.262 Sum_probs=53.1
Q ss_pred eeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEec--CCCCCCCCCCcccccccccccCCeEEEec
Q 040442 2 KLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLN--RKDELHASSPPESLHSLGVTAGDLIFYSR 76 (522)
Q Consensus 2 KLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN--~kd~L~~~~~~~tL~slGIvSGDLI~~~l 76 (522)
+||||+- .+.++.-.++.+.||++|++.|... ......|.|.-+ +| .|...|...||.++|++..-.|+|.-
T Consensus 45 ~IqIRlP-dG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk-~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 45 QLMLRYP-DGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRR-KLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp EEEEECT-TSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCC-EETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred EEEEECC-CCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCc-CCccCCCCCCHHHCCCCCceEEEEEE
Confidence 6888884 3456777788889999999999875 334456877655 55 45444678999999999876666653
No 115
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=87.94 E-value=0.73 Score=39.26 Aligned_cols=70 Identities=26% Similarity=0.353 Sum_probs=56.6
Q ss_pred eeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEe
Q 040442 2 KLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYS 75 (522)
Q Consensus 2 KLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~ 75 (522)
+|+|+.-+.++.+.+.+--+.+|+-|-..-++...-+.+++++.++|. .|. +.+|-.+||+..||.|-|.
T Consensus 27 ~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~-rI~---~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 27 QLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGT-KLS---GRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTE-ECC---SCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCE-EcC---CCCCHHHcCCCCCCEEEEe
Confidence 466666333356788888888999999999998766667899999997 563 7899999999999999874
No 116
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=87.79 E-value=0.69 Score=44.32 Aligned_cols=72 Identities=17% Similarity=0.308 Sum_probs=61.8
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
++|||+. .+..+.+.+--+.+|..|.....+...-+.+++++-.+|+. |. +.+|..+||+..||.|.+.+.-
T Consensus 30 I~LkV~~--~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~r-I~---~~~TP~dL~MEdgD~Idv~~~q 101 (200)
T 3pge_A 30 INLKVSD--GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIR-IQ---ADQTPEDLDMEDNDIIEAHREQ 101 (200)
T ss_dssp EEEEEEC--SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEE-CC---TTCCTTTTTCCTTEEEEEEECC
T ss_pred EEEEEec--CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEE-cC---CCCCHHHcCCCCCCEEEEEecc
Confidence 3677764 77788999988899999999999987767788999999975 42 7899999999999999999875
No 117
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=87.79 E-value=1 Score=35.63 Aligned_cols=65 Identities=17% Similarity=0.153 Sum_probs=45.7
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCC-CC--CceEEEecCCCCCCCCCCcccccccccccCCeEEEe
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISS-SP--SSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYS 75 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~-s~--~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~ 75 (522)
||.+||.-..-+.-.+|+ +..|++||.+.|... .. .. +.+.+.+|+..-- +.+.. +..||-|-|+
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~-~~l~~~l~~~~vavN~~~v~---~~~~~-----l~~gDeV~i~ 68 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEK-EGLKEWLGVCAIALNDHLID---NLNTP-----LKDGDVISLL 68 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTC-TTTTTTTTTCEEEESSSEEC---CTTCC-----CCTTCEEEEE
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHC-cCHHHHhhccEEEECCEEcC---CCCcC-----CCCCCEEEEE
Confidence 899999865544455788 567999999999864 21 11 4699999998721 12233 6679999876
No 118
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=86.27 E-value=1.1 Score=39.59 Aligned_cols=68 Identities=10% Similarity=0.158 Sum_probs=50.2
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCC-CCCceEEEec-CCCCCCCCCCcccccccccccCCe
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISS-SPSSLRFSLN-RKDELHASSPPESLHSLGVTAGDL 71 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~-s~~~~~lSLN-~kd~L~~~~~~~tL~slGIvSGDL 71 (522)
.+||||+- .+.++.-.++.+.||++|++.|...... ....|.|.-+ -+..|. |.+.||.++|++..=+
T Consensus 53 t~IqIRlp-dG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~--d~~~TL~eagL~psav 122 (127)
T 1s3s_G 53 TNIQIRLA-DGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELA--DENQTLKEANLLNAVI 122 (127)
T ss_dssp CCEEEEET-TTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECC--STTCBHHHHTCSSCEE
T ss_pred EEEEEECC-CCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCC--CCCCcHHHCCCcCceE
Confidence 36899984 4556777888899999999999998643 3456777544 233564 5789999999997533
No 119
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=85.35 E-value=0.73 Score=44.27 Aligned_cols=72 Identities=17% Similarity=0.289 Sum_probs=61.1
Q ss_pred eeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCCC
Q 040442 2 KLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDPY 79 (522)
Q Consensus 2 KLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~~ 79 (522)
+|+|+. .+..+.+.|--+.+|..|.....+...-+.+++++-++|+ .|. +.+|..+||+..||.|.|.+...
T Consensus 59 nLKVk~--dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGq-RI~---~ddTPeDLdMEDGDtIDV~leQ~ 130 (207)
T 3tix_A 59 NLKVSD--GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGI-EIQ---ADQTPEDLDMEDNDIIEAHREQI 130 (207)
T ss_dssp EEEEEC--SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTE-ECC---SSCCTTTTTCCTTEEEEECCCCC
T ss_pred EEEEec--CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCe-ecC---CCCCHHHcCCCCCCEEEEEEecc
Confidence 566754 7778889998888999999999998766778899999997 553 78999999999999999999753
No 120
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=84.91 E-value=0.58 Score=38.96 Aligned_cols=43 Identities=9% Similarity=0.176 Sum_probs=37.0
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEe
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSL 46 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSL 46 (522)
||+.|+. . -|+-|+||...++++|++.|++.|.-+++...||.
T Consensus 6 ~~VKV~~--~-~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsY 48 (83)
T 1oey_A 6 YTLKVHY--K-YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSY 48 (83)
T ss_dssp EEEEEES--S-SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEE
T ss_pred EEEEEEE--E-EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEe
Confidence 6788888 5 89999999999999999999999976666666665
No 121
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=84.66 E-value=1.6 Score=37.39 Aligned_cols=72 Identities=22% Similarity=0.254 Sum_probs=52.3
Q ss_pred eeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEec--CCCCCCCCCCcccccccccccCCeEEEecC
Q 040442 2 KLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLN--RKDELHASSPPESLHSLGVTAGDLIFYSRD 77 (522)
Q Consensus 2 KLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN--~kd~L~~~~~~~tL~slGIvSGDLI~~~l~ 77 (522)
+|+||+- .+.++.-.+..+.||++|++.|... ......|.|.-+ +|. |. .|...||.++|++..-.|+|.-.
T Consensus 25 ~IqiRlp-dG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~-l~-~d~~~TL~e~gL~p~a~L~Ve~~ 98 (109)
T 2cr5_A 25 TVALRCP-NGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRA-LE-VEGGSSLEDIGITVDTVLNVEEK 98 (109)
T ss_dssp EEEEECT-TSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCB-CC-CCSSCBHHHHTCSSCEEEEEEEC
T ss_pred EEEEECC-CCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcC-CC-CCCCCCHHHcCCCCCeEEEEEeC
Confidence 6788884 3445556677788999999999854 223446877654 554 53 36799999999999988877643
No 122
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=82.75 E-value=1.4 Score=39.52 Aligned_cols=73 Identities=21% Similarity=0.277 Sum_probs=49.4
Q ss_pred eeeeeecccccceeccCCCCcchHHHHHHHhhhcCC-CCCceEE--E--------------------------------e
Q 040442 2 KLRLRSLENKETLRLEVPSSCTLHELGETLSQLISS-SPSSLRF--S--------------------------------L 46 (522)
Q Consensus 2 KLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~-s~~~~~l--S--------------------------------L 46 (522)
.||||.+ .++...+-|.++.|++++...|.+.+.- ..+.+.| + |
T Consensus 13 ~LkV~ll-Dg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL 91 (128)
T 2kc2_A 13 PLKIRML-DGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKL 91 (128)
T ss_dssp EEEEECT-TSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSC
T ss_pred cEEEEcC-CCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHh
Confidence 4788886 4456667777788999999999999853 2222322 2 1
Q ss_pred cCCCCCCCCCCcccccccccccCCeEEEe
Q 040442 47 NRKDELHASSPPESLHSLGVTAGDLIFYS 75 (522)
Q Consensus 47 N~kd~L~~~~~~~tL~slGIvSGDLI~~~ 75 (522)
|.-|++.--|+..||.+.||..||.|++=
T Consensus 92 ~~dd~~~WLD~srtL~EQGI~e~~tllLR 120 (128)
T 2kc2_A 92 HTDDELNWLDHGRTLREQGVEEHETLLLR 120 (128)
T ss_dssp CCSSSEEEECSSSCHHHHTCCTTSEEEEE
T ss_pred cccCCCCcccCCCcHHHcCCCCCCEEEEE
Confidence 22222222256899999999999998764
No 123
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=82.10 E-value=1.7 Score=34.94 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=32.4
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRK 49 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~k 49 (522)
||+.||+-.. .+..+|+|+..|+.||-+.|. -+.+.+.+..||.
T Consensus 1 M~v~Vkl~g~-~~~~~ev~~g~Tv~dLL~~Lg----l~~~~VvV~vNG~ 44 (74)
T 2l32_A 1 MNVTVEVVGE-ETSEVAVDDDGTYADLVRAVD----LSPHEVTVLVDGR 44 (74)
T ss_dssp CEEEEECSSS-SEEEEECSTTCSHHHHHHTTC----CCSSCCCEECCCC
T ss_pred CEEEEEEeCc-cceeEEcCCCCcHHHHHHHcC----CCcceEEEEECCE
Confidence 9999999533 344589999999988765443 2455678999996
No 124
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=77.63 E-value=5.8 Score=32.92 Aligned_cols=66 Identities=12% Similarity=0.225 Sum_probs=45.9
Q ss_pred Ceeeeeeccc------ccceeccCCCCcchHHHHHHHhhhcCC-----------CCCceEEEecCCCCCCCCCCcccccc
Q 040442 1 MKLRLRSLEN------KETLRLEVPSSCTLHELGETLSQLISS-----------SPSSLRFSLNRKDELHASSPPESLHS 63 (522)
Q Consensus 1 MKLRvR~~~~------~~T~rlevp~~~TL~eLr~~l~~~l~~-----------s~~~~~lSLN~kd~L~~~~~~~tL~s 63 (522)
|+.+||.-.. +....+|+++..|++||.+.|...-.. -.+.+.+-+|++..= . +
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~----~-----~ 80 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVS----W-----D 80 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCC----T-----T
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECC----C-----C
Confidence 7778887332 145678888888999999999765211 124589999998752 2 2
Q ss_pred cccccCCeEEEe
Q 040442 64 LGVTAGDLIFYS 75 (522)
Q Consensus 64 lGIvSGDLI~~~ 75 (522)
.=|..||-|-|+
T Consensus 81 ~~L~dGDeV~i~ 92 (98)
T 1vjk_A 81 EELKDGDVVGVF 92 (98)
T ss_dssp CBCCTTCEEEEE
T ss_pred CCCCCCCEEEEE
Confidence 236789998775
No 125
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=74.29 E-value=0.64 Score=45.23 Aligned_cols=72 Identities=17% Similarity=0.313 Sum_probs=0.0
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
|.|+| -..+..+.+.+--+..|..|.+...+...-+.+++++-.+|+ .|. +++|..+||+..||.|.+++..
T Consensus 22 InLKV--~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGq-RI~---dddTPadL~MEDGDtIDV~leQ 93 (227)
T 3v7o_A 22 INLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI-RIQ---ADQTPEDLDMEDNDIIEAHREQ 93 (227)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred EEEEE--eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCE-ecC---CCCCHHHcCCCCCCEEEEEecc
Confidence 56677 336677888888888999999988888665778899999998 553 7899999999999999999864
No 126
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=71.48 E-value=6.1 Score=32.26 Aligned_cols=69 Identities=16% Similarity=0.140 Sum_probs=42.8
Q ss_pred Ceeeeeecccc-----cceeccCCCCcchHHHHHHHhhhcCC------C---CC----ceEEEecCCCCCCCCCCccccc
Q 040442 1 MKLRLRSLENK-----ETLRLEVPSSCTLHELGETLSQLISS------S---PS----SLRFSLNRKDELHASSPPESLH 62 (522)
Q Consensus 1 MKLRvR~~~~~-----~T~rlevp~~~TL~eLr~~l~~~l~~------s---~~----~~~lSLN~kd~L~~~~~~~tL~ 62 (522)
||.+||.-..= ....+|+ +..|++||.+.|.+.... . .. .+.+.+|+++.-.....+..
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~~~~-- 77 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGLATA-- 77 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGGGCB--
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCCCcC--
Confidence 88899874321 1224663 446999999999876421 1 12 48999999875421112223
Q ss_pred ccccccCCeEEEe
Q 040442 63 SLGVTAGDLIFYS 75 (522)
Q Consensus 63 slGIvSGDLI~~~ 75 (522)
+..||-|-|+
T Consensus 78 ---L~~gDeV~i~ 87 (93)
T 3dwg_C 78 ---IADGDSVTIL 87 (93)
T ss_dssp ---CCTTCEEEEE
T ss_pred ---CCCCCEEEEE
Confidence 5679998776
No 127
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=69.66 E-value=5.1 Score=36.51 Aligned_cols=56 Identities=18% Similarity=0.328 Sum_probs=39.9
Q ss_pred CCcchHHHHHHHhhhcCC--CCC-ceEE-------------------EecCCCCCCCCCCcccccccccccCCeEEEecC
Q 040442 20 SSCTLHELGETLSQLISS--SPS-SLRF-------------------SLNRKDELHASSPPESLHSLGVTAGDLIFYSRD 77 (522)
Q Consensus 20 ~~~TL~eLr~~l~~~l~~--s~~-~~~l-------------------SLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~ 77 (522)
-+|||.||-..|.++..+ ... .|.+ ..+|+ .+.|+..||++++++-||-|-+.+-
T Consensus 62 ~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~---~~~dd~kTL~~~rF~iGDyidvaI~ 138 (143)
T 4a6q_A 62 MDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGR---KGTDDSMTLQSQKFQIGDYLDIAIT 138 (143)
T ss_dssp TTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTB---CCTTTTCBTGGGTCCTTCEEEEEEE
T ss_pred CCCCHHHHHHHHHHhCccccCCCCEEEEEEEcccCCCCceeeccCCEEecCC---CCCcccccHHHCCCcCCCEEEEEEe
Confidence 368999999999999754 111 1222 22222 1347899999999999999988875
Q ss_pred C
Q 040442 78 P 78 (522)
Q Consensus 78 ~ 78 (522)
|
T Consensus 139 p 139 (143)
T 4a6q_A 139 P 139 (143)
T ss_dssp C
T ss_pred C
Confidence 4
No 128
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=66.11 E-value=2.4 Score=36.17 Aligned_cols=64 Identities=14% Similarity=0.257 Sum_probs=41.2
Q ss_pred cceeccCCCCcchHHHHHHHhhh--cCCCCCceEEEec--CCCCC----------CCCCCcccccccccccCCeEEEe
Q 040442 12 ETLRLEVPSSCTLHELGETLSQL--ISSSPSSLRFSLN--RKDEL----------HASSPPESLHSLGVTAGDLIFYS 75 (522)
Q Consensus 12 ~T~rlevp~~~TL~eLr~~l~~~--l~~s~~~~~lSLN--~kd~L----------~~~~~~~tL~slGIvSGDLI~~~ 75 (522)
....|+|..+.||+||-+.|.+- +.-..-+++-.++ +|.-- +-++-..+|..||+..||-|.|+
T Consensus 5 ~~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 5 LPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred CcEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 35678999999999999999883 2212222322221 22211 11122677999999999999996
No 129
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=65.25 E-value=9.8 Score=29.74 Aligned_cols=61 Identities=18% Similarity=0.186 Sum_probs=40.2
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEec
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSR 76 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l 76 (522)
||++|-- ...+..+|+++..|+.+|.+.+.. ..+.+.+-+|+.=.= ..+ =+..||-|-|+-
T Consensus 5 m~i~vNg--~~~~~~~~~~~~~tv~~Ll~~l~~----~~~~v~vavN~~~v~----~~~-----~L~~gD~V~ii~ 65 (70)
T 1ryj_A 5 MKFTVIT--DDGKKILESGAPRRIKDVLGELEI----PIETVVVKKNGQIVI----DEE-----EIFDGDIIEVIR 65 (70)
T ss_dssp EEEEEEE--TTEEEEEEESSCCBHHHHHHHTTC----CTTTEEEEETTEECC----TTS-----BCCTTCEEEEEE
T ss_pred EEEEEeC--ccCceeEECCCCCcHHHHHHHhCC----CCCCEEEEECCEECC----Ccc-----cCCCCCEEEEEe
Confidence 4444444 444456788888899999998842 345688999997422 112 356799888763
No 130
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=60.29 E-value=1.8 Score=44.53 Aligned_cols=71 Identities=17% Similarity=0.306 Sum_probs=0.0
Q ss_pred eeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCCC
Q 040442 3 LRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDPY 79 (522)
Q Consensus 3 LRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~~ 79 (522)
|+|+ +.+.++.+.+.-+.+|.-|.....+...-+..++++..||+ .|. +++|-.+||+..||.|-+.+...
T Consensus 33 lkv~--~~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~-~i~---~~~Tp~~l~med~d~i~~~~~q~ 103 (389)
T 4da1_A 33 LKVS--DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI-RIQ---ADQAPEDLDMEDNDIIEAHREQI 103 (389)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred EEEe--cCCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCE-EcC---CCCCHHHcCCCCCCEeeeeeccc
Confidence 4444 36667777887778888888888888766788899999998 563 78999999999999999998753
No 131
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=59.80 E-value=15 Score=35.03 Aligned_cols=63 Identities=11% Similarity=0.264 Sum_probs=48.6
Q ss_pred eeccCCCCcchHHHHHHHhhhcCCCCC-ceEE---EecCCCCCCCCCCcccccccccccCCeEEEecC
Q 040442 14 LRLEVPSSCTLHELGETLSQLISSSPS-SLRF---SLNRKDELHASSPPESLHSLGVTAGDLIFYSRD 77 (522)
Q Consensus 14 ~rlevp~~~TL~eLr~~l~~~l~~s~~-~~~l---SLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~ 77 (522)
..+.+.-.+|+++|...+.+.+.-+.+ .++| ..+++-+++. ++..||..++|.+|+.|.+-+.
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~-~~~~tl~~~~l~~~Q~illE~r 208 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLN-KPDSTIQDAGLYQGQVLVIEQK 208 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECC-CTTSBHHHHTCCTTCEEEEEEC
T ss_pred eEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecC-CCCCCHHHhCCCCCCEEEEEEe
Confidence 345667778999999999999865554 4444 4466767764 5678999999999999998774
No 132
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=58.46 E-value=25 Score=28.22 Aligned_cols=55 Identities=18% Similarity=0.193 Sum_probs=39.6
Q ss_pred cceeccCCCCcchHHHHHHHhhhcC-------CCC----CceEEEecCCCCCCCCCCcccccccccccCCeEEEe
Q 040442 12 ETLRLEVPSSCTLHELGETLSQLIS-------SSP----SSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYS 75 (522)
Q Consensus 12 ~T~rlevp~~~TL~eLr~~l~~~l~-------~s~----~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~ 75 (522)
....+++|+..|++||.+.|...-. ... +.+.+.+|++..= .+. =+..||-|-|+
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~----~~~-----~l~~gDeV~i~ 83 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAA----LGE-----ATAAGDELALF 83 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECC----TTS-----BCCTTCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECC----CCc-----ccCCCCEEEEE
Confidence 5567899988899999999987532 111 2389999998753 222 26779999876
No 133
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=56.96 E-value=13 Score=30.95 Aligned_cols=70 Identities=11% Similarity=0.216 Sum_probs=43.2
Q ss_pred Ceeeeeeccc-------ccceeccCC--CCcchHHHHHHHhhhcCC---------CCC----ceEEEecCCCCCCCCCCc
Q 040442 1 MKLRLRSLEN-------KETLRLEVP--SSCTLHELGETLSQLISS---------SPS----SLRFSLNRKDELHASSPP 58 (522)
Q Consensus 1 MKLRvR~~~~-------~~T~rlevp--~~~TL~eLr~~l~~~l~~---------s~~----~~~lSLN~kd~L~~~~~~ 58 (522)
||.+||+-.. +....+++| +..|++||.+.|.+.... ... .+.+-+|+.+.=...+..
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~~d 81 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEKD 81 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTGGG
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCCCC
Confidence 6777776322 244567778 567999999999866421 111 256899998742110122
Q ss_pred ccccccccccCCeEEEe
Q 040442 59 ESLHSLGVTAGDLIFYS 75 (522)
Q Consensus 59 ~tL~slGIvSGDLI~~~ 75 (522)
.. +..||-|-|+
T Consensus 82 ~~-----L~dgDeVa~~ 93 (99)
T 2qjl_A 82 YI-----LEDGDIISFT 93 (99)
T ss_dssp CB-----CCTTCEEEEE
T ss_pred cC-----cCCCCEEEEE
Confidence 22 5679998774
No 134
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=56.14 E-value=2.4 Score=44.08 Aligned_cols=71 Identities=17% Similarity=0.304 Sum_probs=0.0
Q ss_pred eeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 2 KLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 2 KLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
.|+|+. ++..+.+.+--+.+|+.|.+...+...-+.+++++..+|+ .|. +++|..+||+..||.|.+.+..
T Consensus 23 ~LKV~~--~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~-rI~---~~~TP~~L~MEDgD~Idv~~~Q 93 (360)
T 3ix6_A 23 NLKVSD--GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI-RIQ---ADQTPEDLDMEDNDIIEAHREQ 93 (360)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred EEEEec--CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCe-ECC---CCCChHHcCCCccchhhhhhcc
Confidence 466665 6777888888888999999988887665778899999997 453 7899999999999999999864
No 135
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=54.28 E-value=20 Score=29.75 Aligned_cols=69 Identities=13% Similarity=0.121 Sum_probs=42.1
Q ss_pred Ceeeeeecccc----cceeccCCCCcchHHHHHHHhhhcCC-------CC---Cce-------EEEecCCCCCCCCCCcc
Q 040442 1 MKLRLRSLENK----ETLRLEVPSSCTLHELGETLSQLISS-------SP---SSL-------RFSLNRKDELHASSPPE 59 (522)
Q Consensus 1 MKLRvR~~~~~----~T~rlevp~~~TL~eLr~~l~~~l~~-------s~---~~~-------~lSLN~kd~L~~~~~~~ 59 (522)
||.+||.-..= .+-.++++ ..|+.||.+.|...... .. ..+ .+-+|++..-...+.+.
T Consensus 4 m~v~V~~fa~lr~~~g~~~~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~~~~~ 82 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTPELPLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLEGLET 82 (99)
T ss_dssp CEEEEEECTHHHHHHSSSEEEEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTTSTTS
T ss_pred eEEEEEEeHHHHHHhCCCeEEEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccCCCCC
Confidence 78888883321 22334555 47999999999766321 11 124 89999986532112233
Q ss_pred cccccccccCCeEEEe
Q 040442 60 SLHSLGVTAGDLIFYS 75 (522)
Q Consensus 60 tL~slGIvSGDLI~~~ 75 (522)
. +..||-|-|+
T Consensus 83 ~-----L~~gD~V~i~ 93 (99)
T 2l52_A 83 L-----LKDSDEIGIL 93 (99)
T ss_dssp C-----CCTTEEEEEE
T ss_pred C-----CCCCCEEEEE
Confidence 3 5679998775
No 136
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=54.23 E-value=12 Score=33.45 Aligned_cols=56 Identities=13% Similarity=0.221 Sum_probs=39.2
Q ss_pred cchHHHHHHHhhhcCCCCCceEEE-ecCCCCCCCCCC----cccccccccccCCeEEEecCC
Q 040442 22 CTLHELGETLSQLISSSPSSLRFS-LNRKDELHASSP----PESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 22 ~TL~eLr~~l~~~l~~s~~~~~lS-LN~kd~L~~~~~----~~tL~slGIvSGDLI~~~l~~ 78 (522)
+||++|-+.|+..+.=+. .|.|. .|...-|-.+|- ..+|+++||..|-.|.|+=++
T Consensus 20 ~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~DEd 80 (127)
T 3onh_A 20 MKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSDEE 80 (127)
T ss_dssp CBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEESC
T ss_pred cCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEccc
Confidence 599999999888765443 45554 344444432111 789999999999999999654
No 137
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=54.09 E-value=15 Score=31.68 Aligned_cols=70 Identities=11% Similarity=0.099 Sum_probs=45.0
Q ss_pred Ceeeeeecccc-----cceeccCCC---C-cchHHHHHHHhhhcCC-------C-C--C---ceEEEecCCCCCCCCCCc
Q 040442 1 MKLRLRSLENK-----ETLRLEVPS---S-CTLHELGETLSQLISS-------S-P--S---SLRFSLNRKDELHASSPP 58 (522)
Q Consensus 1 MKLRvR~~~~~-----~T~rlevp~---~-~TL~eLr~~l~~~l~~-------s-~--~---~~~lSLN~kd~L~~~~~~ 58 (522)
||++|++...= +...++||+ + .|++||-+.|++.+.. . . + .+-+-.||.|--.-..-+
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~gld 84 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYVKERPDLLVDQTGQTLRPGILVLVNSCDAEVVGGMD 84 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTCCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTSSC
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHccccchhhEecCCCcccCCCeEEEECCeeeeccCCcc
Confidence 78888874331 356799994 3 3999999999987532 2 2 2 266899998842211122
Q ss_pred ccccccccccCCeEEEe
Q 040442 59 ESLHSLGVTAGDLIFYS 75 (522)
Q Consensus 59 ~tL~slGIvSGDLI~~~ 75 (522)
. =+..||-|.|+
T Consensus 85 t-----~L~dgD~V~fi 96 (110)
T 2k9x_A 85 Y-----VLNDGDTVEFI 96 (110)
T ss_dssp C-----CCCSSCEEEEE
T ss_pred c-----CCCCcCEEEEe
Confidence 2 25679998773
No 138
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=53.88 E-value=29 Score=29.96 Aligned_cols=69 Identities=12% Similarity=0.133 Sum_probs=44.7
Q ss_pred Ceeeeeeccc------c-cceeccCCC--C-cchHHHHHHHhhhcCC-------C-CC---ceEEEecCCCC-CCCCCCc
Q 040442 1 MKLRLRSLEN------K-ETLRLEVPS--S-CTLHELGETLSQLISS-------S-PS---SLRFSLNRKDE-LHASSPP 58 (522)
Q Consensus 1 MKLRvR~~~~------~-~T~rlevp~--~-~TL~eLr~~l~~~l~~-------s-~~---~~~lSLN~kd~-L~~~~~~ 58 (522)
||.+||+... + .++.||+|+ . .|++||-+.|.+.... . .+ .+-+-+|+.|- +.+ ..+
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~-gld 90 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLG-ELD 90 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHHHHC-TTT
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeeeccC-CcC
Confidence 7888887321 1 245699995 3 4999999999987532 2 22 37799999873 211 123
Q ss_pred ccccccccccCCeEEEe
Q 040442 59 ESLHSLGVTAGDLIFYS 75 (522)
Q Consensus 59 ~tL~slGIvSGDLI~~~ 75 (522)
.. +..||-|.|+
T Consensus 91 t~-----L~dGDeV~ii 102 (114)
T 1wgk_A 91 YQ-----LQDQDSILFI 102 (114)
T ss_dssp CB-----CCSSEEEEEE
T ss_pred cC-----CCCCCEEEEe
Confidence 33 4579998774
No 139
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=52.66 E-value=29 Score=33.32 Aligned_cols=62 Identities=10% Similarity=0.183 Sum_probs=48.0
Q ss_pred eccCCCCcchHHHHHHHhhhcCCCCC-ceEEEe---cCCCCCCCCCCcccccccccccCCeEEEecC
Q 040442 15 RLEVPSSCTLHELGETLSQLISSSPS-SLRFSL---NRKDELHASSPPESLHSLGVTAGDLIFYSRD 77 (522)
Q Consensus 15 rlevp~~~TL~eLr~~l~~~l~~s~~-~~~lSL---N~kd~L~~~~~~~tL~slGIvSGDLI~~~l~ 77 (522)
.+.+--..|.++|..++.+.+.-+.+ .++|-. +++-+++. ++..||..++|.+|+.|.+-+.
T Consensus 155 ~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~-~~~~tl~d~~L~~~Q~illE~r 220 (231)
T 3jyu_A 155 SCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLS-KLDNTIQDAGLYQGQVLVIEPQ 220 (231)
T ss_dssp EEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECC-CTTSBTTTTTCCTTEEEEEEEC
T ss_pred EEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhc-CCCCCHHHhCCCCCCEEEEEEe
Confidence 34556667999999999998865554 577665 45566663 5779999999999999998775
No 140
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=51.71 E-value=44 Score=26.52 Aligned_cols=56 Identities=13% Similarity=0.025 Sum_probs=36.8
Q ss_pred eccCCCCcchHHHHHHHhhhc--------CCCC---CceEEEecCCCCCCCCCCcccccccccccCCeEEEe
Q 040442 15 RLEVPSSCTLHELGETLSQLI--------SSSP---SSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYS 75 (522)
Q Consensus 15 rlevp~~~TL~eLr~~l~~~l--------~~s~---~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~ 75 (522)
.+|+++..|++||.+.|.... .... +.+.+-+|++..=........ +..||-|.|+
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~~~~~~-----l~~gD~V~i~ 84 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMKGLDTE-----IKDDDKIDLF 84 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTCSSSCB-----CCTTCEEEEE
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccCCCCcC-----CCCCCEEEEe
Confidence 456766679999999998762 2221 468999999865321112222 6789998875
No 141
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=48.97 E-value=15 Score=29.12 Aligned_cols=60 Identities=15% Similarity=0.140 Sum_probs=37.9
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEe
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYS 75 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~ 75 (522)
|++|..+ ......+++++..|+.||.+.|.- +.+.+.+-+|++-.= .. .=|..||-|-|+
T Consensus 12 a~~~e~~--~~n~~~~~~~~~~Tv~dLl~~L~~----~~~~v~VavNg~~v~----~~-----~~L~dGD~V~i~ 71 (77)
T 1rws_A 12 IKVKVIG--RNIEKEIEWREGMKVRDILRAVGF----NTESAIAKVNGKVVL----ED-----DEVKDGDFVEVI 71 (77)
T ss_dssp CCCBSTT--CCCCCCCCCCSSCCHHHHHHTTTC----SSCSSCEEETTEEEC----SS-----SCCCSSCCCBCS
T ss_pred HHHHHhc--ccCCEEEECCCCCcHHHHHHHhCC----CCcCEEEEECCEECC----CC-----CCcCCCCEEEEE
Confidence 3455555 334456688888899999887752 345678999986431 11 235667766554
No 142
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=46.57 E-value=31 Score=34.90 Aligned_cols=72 Identities=14% Similarity=0.212 Sum_probs=54.0
Q ss_pred eeeeeecccccceeccCCCCcchHHHHHHHhhhcCC----CCCceEEEe----cCCCCCCCCCCcccccccccccCCeEE
Q 040442 2 KLRLRSLENKETLRLEVPSSCTLHELGETLSQLISS----SPSSLRFSL----NRKDELHASSPPESLHSLGVTAGDLIF 73 (522)
Q Consensus 2 KLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~----s~~~~~lSL----N~kd~L~~~~~~~tL~slGIvSGDLI~ 73 (522)
-|||++. +-|=.+++..+.|.+|....|++.+.. +.+.+.|=+ +.|.--. ++..||..||+.+||.|.
T Consensus 5 ~~~~~~~--~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl--~~~~~l~~y~~~~~~~l~ 80 (371)
T 3ivf_A 5 SLKISIG--NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWL--EAGKALDYYMLRNGDTME 80 (371)
T ss_dssp EEEEEET--TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEEC--CTTSBGGGGTCCTTCEEE
T ss_pred EEEEEec--ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEec--cCCCCHHHhCCCCCceee
Confidence 4788885 555556666688999999999999864 344688888 4444423 256799999999999998
Q ss_pred EecC
Q 040442 74 YSRD 77 (522)
Q Consensus 74 ~~l~ 77 (522)
+.-.
T Consensus 81 ~~~~ 84 (371)
T 3ivf_A 81 YRKK 84 (371)
T ss_dssp EEEC
T ss_pred ccCc
Confidence 8643
No 143
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=40.01 E-value=56 Score=27.71 Aligned_cols=71 Identities=18% Similarity=0.284 Sum_probs=59.5
Q ss_pred eeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 2 KLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 2 KLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
.|+||. .++.+++-+=-+.-|+-|-.+..+...-+.+++++-++|..-- +.+|-.+||.--||-|-+.+-.
T Consensus 23 niKV~~--~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~----~~~TP~~L~meD~DiID~~~~~ 93 (95)
T 2l76_A 23 PLKIRC--RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELS----PTATPRTLKLGVADIIDCVVLT 93 (95)
T ss_dssp EEEEEC--SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECC----TTSCHHHHTCCSSCEEEEEECC
T ss_pred EEEEEc--CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCC----CCCCHhHcCCCCCCEEEEEEec
Confidence 467774 7888888888888899999998888877888999999997543 7889999999999999887643
No 144
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=39.62 E-value=51 Score=25.64 Aligned_cols=54 Identities=13% Similarity=0.122 Sum_probs=35.9
Q ss_pred cceeccCCCCcchHHHHHHHhhhcCC-----CCCceEEEecCCCCCCCCCCcccccccccccCCeEEEe
Q 040442 12 ETLRLEVPSSCTLHELGETLSQLISS-----SPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYS 75 (522)
Q Consensus 12 ~T~rlevp~~~TL~eLr~~l~~~l~~-----s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~ 75 (522)
....++ ++..|+.||.+.|...... ....+.+.+|++.. . .. .=+..||-|.|+
T Consensus 17 ~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v--~--~~-----~~l~~gD~V~i~ 75 (81)
T 1fm0_D 17 DATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLV--S--FD-----HPLTDGDEVAFF 75 (81)
T ss_dssp SEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEEC--C--TT-----CBCCTTCEEEEE
T ss_pred CeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEEC--C--CC-----CCCCCCCEEEEe
Confidence 345556 6667999999999755210 23457899999854 1 22 236789998875
No 145
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=39.34 E-value=30 Score=28.88 Aligned_cols=47 Identities=11% Similarity=0.161 Sum_probs=36.0
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCCC-CCceEEEecCCCC
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSS-PSSLRFSLNRKDE 51 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s-~~~~~lSLN~kd~ 51 (522)
||+.+.. ++...++.+|.+-|+.||.+.|++.+.-. .+.|.+.- ||+
T Consensus 7 vkvK~~~--~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky--~DE 54 (89)
T 1vd2_A 7 VRVKAYY--RGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKW--IDE 54 (89)
T ss_dssp EEEEEES--SSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEE--CCS
T ss_pred EEEEEEe--CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEE--ECC
Confidence 4666666 78899999999889999999999998643 34565543 555
No 146
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=38.32 E-value=52 Score=30.40 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=46.0
Q ss_pred eeeeeeccccc--ceeccCCCCcchHHHHHHHhhhcCCCCC-ceEEEecCCC-----CCCCC-------------CCccc
Q 040442 2 KLRLRSLENKE--TLRLEVPSSCTLHELGETLSQLISSSPS-SLRFSLNRKD-----ELHAS-------------SPPES 60 (522)
Q Consensus 2 KLRvR~~~~~~--T~rlevp~~~TL~eLr~~l~~~l~~s~~-~~~lSLN~kd-----~L~~~-------------~~~~t 60 (522)
+|||.+.+.+. --||+||.+.||.+|...|..+..=..+ -..+.+++++ ....+ ....+
T Consensus 10 ~lrV~L~~~~p~iWRri~Vp~~~TL~~LH~vIq~afgw~~~HL~~F~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 89 (188)
T 2i1s_A 10 HLKLSIKGITPQIWRRIQVPENYTFLDLHKAIQAVMDWEDYHLHEFEMVNPKTGMLDKIGAEGDDFDAFGGPLVSEKKAK 89 (188)
T ss_dssp EEEEEETTCSSCEEEEEEEETTCBHHHHHHHHHHHTTCCCCSCEEEEEECTTTCSEEEEESCCC-------CEEETTTCB
T ss_pred EEEEEECCCCCCeEEEEEECCCCCHHHHHHHHHHHhCCCCCEeeEEEECCCCcccceEEccCCccccccccccccccccC
Confidence 35666643332 2479999999999999999999864333 3444445541 11111 13556
Q ss_pred ccccccccCCeEEEecC
Q 040442 61 LHSLGVTAGDLIFYSRD 77 (522)
Q Consensus 61 L~slGIvSGDLI~~~l~ 77 (522)
|.++--..|+-+.|+-.
T Consensus 90 L~~~l~~~g~~~~Y~YD 106 (188)
T 2i1s_A 90 LSDYFTLENKEALYTYD 106 (188)
T ss_dssp HHHHCBTTBCEEEEEEC
T ss_pred HHHHhcCCCCEEEEEEe
Confidence 77764446777777664
No 147
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=37.60 E-value=31 Score=31.49 Aligned_cols=66 Identities=17% Similarity=0.293 Sum_probs=42.1
Q ss_pred CeeeeeecccccceeccCCCCc---chHHHHHHHhhhcCC---CCCceEEEecCCCCCCCCCCcccccccccccCCeEEE
Q 040442 1 MKLRLRSLENKETLRLEVPSSC---TLHELGETLSQLISS---SPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFY 74 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~---TL~eLr~~l~~~l~~---s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~ 74 (522)
||+|+.+ ..+++..+|-|+. |-.++.+.|=-.+.- +.| +...|..+ |.. +.+ +...+..||+.|+
T Consensus 30 ~~I~i~~--~~~~~~a~L~D~~aP~Ta~~f~~~LPl~~~~~~~g~E-~y~~lp~~--l~~-~en---~~~~~~~GDI~Yy 100 (153)
T 2nnz_A 30 MRLRIRF--ESAECEVELYEEWAPETVRAIADALPIKSTANRWGDE-IYFTTQVA--VEK-EEN---SKDVVELGDVAYW 100 (153)
T ss_dssp CCEEEEE--TTEEEEECCCTTSCHHHHHHHHHTCSEEEEEEEETTE-EEECCSCC--CCC-SSC---CBCCCCTTEEEEE
T ss_pred eEEEEEE--CCEEEEEEEcCCCCHHHHHHHHHhCCcEEEHHhhCCc-EEEECCCC--CCC-CCC---CcccCCCCeEEEe
Confidence 7888888 7799999999997 888877765333211 433 33344444 221 011 2356788999887
Q ss_pred e
Q 040442 75 S 75 (522)
Q Consensus 75 ~ 75 (522)
.
T Consensus 101 ~ 101 (153)
T 2nnz_A 101 I 101 (153)
T ss_dssp T
T ss_pred C
Confidence 6
No 148
>2jx5_A GLUB(S27A); ubiquitin, ribosome, recombination, evolution, ribosomal protein; NMR {Giardia lamblia atcc 50803}
Probab=32.31 E-value=42 Score=26.00 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=25.6
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhh
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQ 33 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~ 33 (522)
|-.-||. +.||+++|+|.-+..+||-..|+.
T Consensus 1 mlvivrl--qdq~lpfelpaga~asqls~lls~ 31 (69)
T 2jx5_A 1 MLVIVRL--QDQTLPFELPAGARASQLSNLLSS 31 (69)
T ss_dssp CEEEEEE--TTEEEEEECCTTCCHHHHHHHHHH
T ss_pred CeEEEEe--ccccccccccccccHHHHHHHHhh
Confidence 5677999 999999999999988887666543
No 149
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=30.57 E-value=65 Score=30.30 Aligned_cols=71 Identities=17% Similarity=0.301 Sum_probs=59.4
Q ss_pred eeeeeecccccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCC
Q 040442 2 KLRLRSLENKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDP 78 (522)
Q Consensus 2 KLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~ 78 (522)
+|+|+. .+.-+.+.+.-+.+|.-|.....+...-+.+++++.++|+. +. +.+|-.++.+..||.|-+....
T Consensus 23 ~ikv~~--~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~-i~---~~~Tpk~L~~ed~d~I~~~~eq 93 (209)
T 3uf8_A 23 NLKVSD--GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIR-IQ---ADQTPEDLDMEDNDIIEAHREQ 93 (209)
T ss_dssp EEEEEC--SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEE-CC---TTCCTTTTTCCTTEEEEEECSC
T ss_pred EEEEEc--CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEe-cc---CCCChHHhhhcccccchhhccc
Confidence 456664 55566788877889999999999998778889999999998 42 7889999999999999999864
No 150
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=30.16 E-value=62 Score=24.56 Aligned_cols=55 Identities=25% Similarity=0.305 Sum_probs=35.3
Q ss_pred cccceeccCCCCcchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEe
Q 040442 10 NKETLRLEVPSSCTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYS 75 (522)
Q Consensus 10 ~~~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~ 75 (522)
++++ +|+++..|+.||.+.|.. ..+.+.+-+|+.-.= .....+.=+..||-|-++
T Consensus 6 Ng~~--~~~~~~~tv~~ll~~l~~----~~~~v~vavN~~~v~-----~~~~~~~~L~~gD~v~i~ 60 (66)
T 1f0z_A 6 NDQA--MQCAAGQTVHELLEQLDQ----RQAGAALAINQQIVP-----REQWAQHIVQDGDQILLF 60 (66)
T ss_dssp SSCE--ECCCTTCCHHHHHHHHTC----CCSSEEEEETTEEEC-----HHHHTTCCCCTTEEECEE
T ss_pred CCEE--EEcCCCCcHHHHHHHcCC----CCCCEEEEECCEECC-----chhcCCcCCCCCCEEEEE
Confidence 4443 477888899999998842 345688999997521 111112235668877765
No 151
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.32 E-value=1.5e+02 Score=24.87 Aligned_cols=67 Identities=16% Similarity=0.215 Sum_probs=47.4
Q ss_pred eeeecccccceeccCCCCc-chHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEecCCC
Q 040442 4 RLRSLENKETLRLEVPSSC-TLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYSRDPY 79 (522)
Q Consensus 4 RvR~~~~~~T~rlevp~~~-TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~l~~~ 79 (522)
||+. ..++.|.=| .+ +|.||+.+...++.-+.+.++|-|---.-.. ++++-+.+|- -+-++++|.+.
T Consensus 13 kV~~--~~Rs~k~GV--~A~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~V--ddEeyF~tLp---~nT~lmvL~~g 80 (91)
T 2eel_A 13 RVSN--HDRSSRRGV--MASSLQELISKTLDALVIATGLVTLVLEEDGTVV--DTEEFFQTLG---DNTHFMILEKG 80 (91)
T ss_dssp EEEC--TTSCCCEEE--EESSHHHHHHHHHHHTTCSSSCEEEEETTTCCBC--CCHHHHTTSC---SSEEEEEEETT
T ss_pred EEec--CCCCeEEeE--EcCCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEE--echhhhhhCC---CCCEEEEEcCC
Confidence 5554 667777777 55 9999999999998654456888886432222 4777777776 67778887664
No 152
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=25.71 E-value=1.1e+02 Score=29.54 Aligned_cols=72 Identities=10% Similarity=0.137 Sum_probs=49.6
Q ss_pred CeeeeeecccccceeccCCCCcchHHHHHHHhhhcCC-CCCceEEEecC-CCCCCCCCCcccccccccccCCeEEE
Q 040442 1 MKLRLRSLENKETLRLEVPSSCTLHELGETLSQLISS-SPSSLRFSLNR-KDELHASSPPESLHSLGVTAGDLIFY 74 (522)
Q Consensus 1 MKLRvR~~~~~~T~rlevp~~~TL~eLr~~l~~~l~~-s~~~~~lSLN~-kd~L~~~~~~~tL~slGIvSGDLI~~ 74 (522)
|.+||..++. |..+++....|.+||-+.|.+.|.- ..+-|.|.+-. +++..==+++..+...++..++-..+
T Consensus 2 i~~~V~l~d~--~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l 75 (294)
T 1ef1_A 2 ISVRVTTMDA--ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLF 75 (294)
T ss_dssp EEEEEEETTE--EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEE
T ss_pred EEEEEEECCc--eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEE
Confidence 5789999875 6789998889999999999999854 55567777632 22211114677887777655443333
No 153
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=25.34 E-value=95 Score=25.78 Aligned_cols=57 Identities=18% Similarity=0.327 Sum_probs=41.3
Q ss_pred cceeccCCCCcchHHHHHHHhhhcCC-CCCceEEEecCCCCCCCCCCcccc----cccccccCCeE
Q 040442 12 ETLRLEVPSSCTLHELGETLSQLISS-SPSSLRFSLNRKDELHASSPPESL----HSLGVTAGDLI 72 (522)
Q Consensus 12 ~T~rlevp~~~TL~eLr~~l~~~l~~-s~~~~~lSLN~kd~L~~~~~~~tL----~slGIvSGDLI 72 (522)
+..+.-||.+.|.+++-..|+..|.- +.+++.|=.|++=.-. +.+++ ..++ ..|=|+
T Consensus 20 ~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~---~d~~~~~Ly~~~k-~DGfLy 81 (91)
T 4gdk_A 20 KTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPS---PDQEVGTLYECFG-SDGKLV 81 (91)
T ss_dssp SCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCC---TTCBHHHHHHHHC-BTTEEE
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCC---hhhHHHHHHHHhC-CCCEEE
Confidence 45567789999999999999999954 6668999999865442 33443 4456 666663
No 154
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=23.14 E-value=1.4e+02 Score=24.53 Aligned_cols=55 Identities=15% Similarity=0.123 Sum_probs=36.6
Q ss_pred cccceeccCCCC-cchHHHHHHHhhhcCCCCCceEEEecCCCCCCCCCCcccccccccccCCeEEEe
Q 040442 10 NKETLRLEVPSS-CTLHELGETLSQLISSSPSSLRFSLNRKDELHASSPPESLHSLGVTAGDLIFYS 75 (522)
Q Consensus 10 ~~~T~rlevp~~-~TL~eLr~~l~~~l~~s~~~~~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~ 75 (522)
+++ .+|+++. .|+.||.+.|. ...+.+.+-+|+.-. +.+...+.=+..||-|-|+
T Consensus 26 NGe--~~el~~~~~Tv~dLL~~L~----~~~~~vaVavNg~iV-----~~~~~~~~~L~dGD~Vei~ 81 (87)
T 1tyg_B 26 NGK--DVKWKKDTGTIQDLLASYQ----LENKIVIVERNKEII-----GKERYHEVELCDRDVIEIV 81 (87)
T ss_dssp TTE--EECCSSSCCBHHHHHHHTT----CTTSCCEEEETTEEE-----CGGGTTTSBCCSSSEEEEE
T ss_pred CCE--EEECCCCCCcHHHHHHHhC----CCCCCEEEEECCEEC-----ChhhcCCcCCCCCCEEEEE
Confidence 444 4567787 89999988874 234568899998642 2222333446789988876
No 155
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=22.75 E-value=1e+02 Score=23.63 Aligned_cols=54 Identities=7% Similarity=0.034 Sum_probs=37.3
Q ss_pred cceeccCCCCcchHHHHHHHhhhcCCCCCce--EEEecCCCCCCCCCCcccccccccccCCeEEEe
Q 040442 12 ETLRLEVPSSCTLHELGETLSQLISSSPSSL--RFSLNRKDELHASSPPESLHSLGVTAGDLIFYS 75 (522)
Q Consensus 12 ~T~rlevp~~~TL~eLr~~l~~~l~~s~~~~--~lSLN~kd~L~~~~~~~tL~slGIvSGDLI~~~ 75 (522)
....+++++..|+.||.+.|...... -+.+ .+.+||+-.= .+ .=+..||-|-|+
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p~-~~~v~~~v~vNg~~v~----~~-----~~L~~gD~V~i~ 71 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYPQ-INNKKFQVAVNEEFVQ----KS-----DFIQPNDTVALI 71 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCGG-GTTCCCEEEETTEEEC----TT-----SEECTTCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCcc-hhcceEEEEECCEECC----CC-----CCcCCCCEEEEE
Confidence 45678888888999999998765321 1234 8999997532 11 246679988775
No 156
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=22.40 E-value=69 Score=27.91 Aligned_cols=45 Identities=13% Similarity=0.195 Sum_probs=34.2
Q ss_pred eccCCCCcchHHHHHHHhhhcC-CCCCceEEEecCCCCCCCCCCcccccc
Q 040442 15 RLEVPSSCTLHELGETLSQLIS-SSPSSLRFSLNRKDELHASSPPESLHS 63 (522)
Q Consensus 15 rlevp~~~TL~eLr~~l~~~l~-~s~~~~~lSLN~kd~L~~~~~~~tL~s 63 (522)
+.=||.+-|.+|+...|+..|. .+.+++.|-.|+. +. ...+++.+
T Consensus 50 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~--~p--~~~~~m~~ 95 (118)
T 3rui_B 50 KYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDT--LP--PTAALMSA 95 (118)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTB--CC--CTTSBHHH
T ss_pred eEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCc--cC--CccchHHH
Confidence 4558999999999999999995 4666899999983 42 35556544
No 157
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=22.09 E-value=67 Score=28.41 Aligned_cols=47 Identities=21% Similarity=0.263 Sum_probs=35.3
Q ss_pred eeccCCCCcchHHHHHHHhhhcC-CCCCceEEEecCCCCCCCCCCccccccc
Q 040442 14 LRLEVPSSCTLHELGETLSQLIS-SSPSSLRFSLNRKDELHASSPPESLHSL 64 (522)
Q Consensus 14 ~rlevp~~~TL~eLr~~l~~~l~-~s~~~~~lSLN~kd~L~~~~~~~tL~sl 64 (522)
.+.=||.+-|.+|+...|+..|. .+.+++.|-.|+. + +...+++.++
T Consensus 55 ~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~--l--Ps~s~~m~~l 102 (125)
T 3m95_A 55 KKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNV--I--PPTSATMGSL 102 (125)
T ss_dssp CEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTB--C--CCTTSBHHHH
T ss_pred CEEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCc--c--CCccchHHHH
Confidence 34568889999999999999995 4666899999973 4 2455665543
No 158
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=21.95 E-value=55 Score=28.66 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=34.9
Q ss_pred eeccCCCCcchHHHHHHHhhhcC-CCCCceEEEecCCCCCCCCCCcccccc
Q 040442 14 LRLEVPSSCTLHELGETLSQLIS-SSPSSLRFSLNRKDELHASSPPESLHS 63 (522)
Q Consensus 14 ~rlevp~~~TL~eLr~~l~~~l~-~s~~~~~lSLN~kd~L~~~~~~~tL~s 63 (522)
.+.=||.+-|.+|+...|+..|. .+.+++.|-.|++ +. ...+++.+
T Consensus 50 ~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~--~p--~~~~~m~~ 96 (119)
T 3h9d_A 50 CKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDT--VL--PSSAQMAD 96 (119)
T ss_dssp CEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTE--EC--CTTSBHHH
T ss_pred ceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCc--CC--CccchHHH
Confidence 34458889999999999999995 4666899999986 43 35555544
Done!