Query 040444
Match_columns 409
No_of_seqs 223 out of 1637
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 08:32:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040444.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040444hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 1.3E-36 2.9E-41 275.0 25.7 225 92-345 1-230 (230)
2 PF07734 FBA_1: F-box associat 99.8 3.8E-17 8.2E-22 139.5 18.6 151 212-367 1-164 (164)
3 PF08268 FBA_3: F-box associat 99.7 1.3E-15 2.8E-20 124.7 13.5 113 212-330 1-118 (129)
4 PLN03215 ascorbic acid mannose 99.4 3E-11 6.6E-16 113.7 19.2 323 2-369 5-373 (373)
5 PHA02713 hypothetical protein; 98.9 2E-07 4.4E-12 94.9 21.4 201 106-353 320-543 (557)
6 PF12937 F-box-like: F-box-lik 98.8 6.1E-10 1.3E-14 73.6 -0.4 42 1-42 1-42 (47)
7 PHA03098 kelch-like protein; P 98.7 1.3E-06 2.8E-11 89.1 20.1 196 107-350 312-518 (534)
8 KOG4441 Proteins containing BT 98.7 1E-06 2.3E-11 89.5 18.3 197 106-350 349-553 (571)
9 PF00646 F-box: F-box domain; 98.6 2.8E-09 6.1E-14 70.8 -1.8 43 2-44 4-46 (48)
10 PHA02713 hypothetical protein; 98.6 5.7E-06 1.2E-10 84.3 20.4 199 107-351 273-497 (557)
11 PLN02153 epithiospecifier prot 98.6 2.1E-05 4.6E-10 75.4 22.5 214 106-352 50-293 (341)
12 KOG4441 Proteins containing BT 98.5 5.4E-06 1.2E-10 84.4 18.6 199 106-351 301-507 (571)
13 smart00256 FBOX A Receptor for 98.5 8.1E-09 1.8E-13 66.0 -1.4 39 4-42 1-39 (41)
14 PHA02790 Kelch-like protein; P 98.5 8.2E-06 1.8E-10 81.9 19.2 183 107-349 288-476 (480)
15 PLN02193 nitrile-specifier pro 98.5 4.7E-05 1E-09 76.2 22.7 209 107-352 194-419 (470)
16 TIGR03548 mutarot_permut cycli 98.4 4.5E-05 9.9E-10 72.5 21.4 112 172-302 87-204 (323)
17 TIGR03547 muta_rot_YjhT mutatr 98.4 0.00024 5.2E-09 68.3 24.1 170 106-304 29-239 (346)
18 PRK14131 N-acetylneuraminic ac 98.2 0.00052 1.1E-08 66.7 22.7 183 93-304 35-260 (376)
19 PLN02153 epithiospecifier prot 98.2 0.00046 1E-08 66.2 21.9 171 106-302 101-294 (341)
20 PHA02790 Kelch-like protein; P 98.1 0.00017 3.8E-09 72.3 18.4 139 93-278 315-456 (480)
21 PHA03098 kelch-like protein; P 98.1 0.00031 6.6E-09 71.7 18.6 172 93-301 339-520 (534)
22 PLN02193 nitrile-specifier pro 97.9 0.0018 3.9E-08 64.9 21.1 158 173-352 193-360 (470)
23 PRK14131 N-acetylneuraminic ac 97.7 0.014 3.1E-07 56.7 22.8 93 173-277 189-288 (376)
24 TIGR03548 mutarot_permut cycli 97.6 0.012 2.5E-07 56.0 20.7 140 106-278 88-233 (323)
25 TIGR03547 muta_rot_YjhT mutatr 97.6 0.025 5.5E-07 54.2 22.7 93 173-277 168-266 (346)
26 KOG1230 Protein containing rep 97.5 0.0056 1.2E-07 57.8 15.7 221 106-354 98-351 (521)
27 KOG0281 Beta-TrCP (transducin 97.3 0.0031 6.7E-08 58.0 11.2 44 2-45 76-123 (499)
28 KOG4693 Uncharacterized conser 97.1 0.022 4.8E-07 50.8 13.8 228 93-355 31-288 (392)
29 KOG2120 SCF ubiquitin ligase, 96.9 0.00014 3.1E-09 65.8 -1.3 39 2-40 99-137 (419)
30 KOG4693 Uncharacterized conser 96.6 0.024 5.1E-07 50.7 10.3 115 171-301 155-285 (392)
31 KOG0379 Kelch repeat-containin 96.5 0.15 3.3E-06 51.2 16.6 178 96-303 123-312 (482)
32 KOG0379 Kelch repeat-containin 96.3 0.78 1.7E-05 46.2 20.3 209 107-353 89-311 (482)
33 KOG2997 F-box protein FBX9 [Ge 95.9 0.0019 4.1E-08 58.9 -0.3 46 1-46 107-157 (366)
34 PF07893 DUF1668: Protein of u 95.0 1.7 3.7E-05 41.6 16.4 162 89-278 69-253 (342)
35 KOG1230 Protein containing rep 94.0 0.93 2E-05 43.4 11.7 156 174-351 99-288 (521)
36 KOG0274 Cdc4 and related F-box 92.6 13 0.00029 37.8 18.9 43 2-44 109-151 (537)
37 PF02191 OLF: Olfactomedin-lik 92.4 8.3 0.00018 35.1 15.4 125 209-352 71-212 (250)
38 PF13964 Kelch_6: Kelch motif 92.2 0.49 1.1E-05 31.0 5.3 40 210-249 5-44 (50)
39 PF08450 SGL: SMP-30/Gluconola 92.2 8.5 0.00019 34.6 22.2 205 93-353 8-223 (246)
40 PF07762 DUF1618: Protein of u 91.9 1.5 3.2E-05 35.5 8.9 73 235-308 8-102 (131)
41 PF07646 Kelch_2: Kelch motif; 90.0 1.2 2.5E-05 29.1 5.4 42 210-251 5-48 (49)
42 PF01344 Kelch_1: Kelch motif; 88.9 1.2 2.6E-05 28.5 4.8 39 210-248 5-43 (47)
43 PF13964 Kelch_6: Kelch motif 88.7 0.67 1.5E-05 30.3 3.5 22 105-126 27-48 (50)
44 KOG2055 WD40 repeat protein [G 87.4 14 0.00031 36.0 12.6 100 233-349 280-380 (514)
45 smart00612 Kelch Kelch domain. 87.1 1.2 2.6E-05 28.1 4.0 21 172-192 14-34 (47)
46 smart00284 OLF Olfactomedin-li 86.8 24 0.00053 32.1 16.3 125 209-352 76-217 (255)
47 PF01344 Kelch_1: Kelch motif; 84.4 2.7 5.8E-05 26.8 4.6 23 170-192 25-47 (47)
48 PF07250 Glyoxal_oxid_N: Glyox 83.9 26 0.00057 31.7 12.1 169 172-369 45-222 (243)
49 KOG4341 F-box protein containi 82.5 0.27 5.8E-06 47.2 -1.2 37 3-39 74-110 (483)
50 COG4257 Vgb Streptogramin lyas 81.6 24 0.00052 32.4 10.7 121 91-252 194-316 (353)
51 PF13360 PQQ_2: PQQ-like domai 78.7 46 0.00099 29.3 18.0 192 95-349 35-236 (238)
52 PF06433 Me-amine-dh_H: Methyl 78.2 50 0.0011 31.4 12.2 119 211-349 188-326 (342)
53 PF13418 Kelch_4: Galactose ox 78.1 4.8 0.0001 25.9 4.1 22 171-192 27-48 (49)
54 PF13418 Kelch_4: Galactose ox 76.8 4.4 9.6E-05 26.1 3.6 38 212-249 7-45 (49)
55 PF05096 Glu_cyclase_2: Glutam 75.6 65 0.0014 29.5 16.9 143 171-350 66-210 (264)
56 PF07646 Kelch_2: Kelch motif; 71.8 6.2 0.00013 25.5 3.4 23 170-192 27-49 (49)
57 PF07893 DUF1668: Protein of u 71.8 95 0.0021 29.7 14.4 110 235-350 88-214 (342)
58 PF13360 PQQ_2: PQQ-like domai 70.6 74 0.0016 27.9 13.8 112 212-349 32-146 (238)
59 PRK11138 outer membrane biogen 69.8 81 0.0018 30.6 12.3 115 210-349 63-184 (394)
60 PLN02772 guanylate kinase 68.4 46 0.00099 32.4 9.7 76 210-289 28-107 (398)
61 KOG0647 mRNA export protein (c 68.1 68 0.0015 29.8 10.1 65 279-354 49-113 (347)
62 PF05096 Glu_cyclase_2: Glutam 66.8 1E+02 0.0023 28.2 13.7 117 210-352 47-167 (264)
63 PRK11138 outer membrane biogen 66.8 1.3E+02 0.0028 29.2 19.1 138 174-348 171-317 (394)
64 cd01207 Ena-Vasp Enabled-VASP- 63.3 30 0.00066 27.0 6.1 42 107-157 10-51 (111)
65 PF10282 Lactonase: Lactonase, 62.1 1.5E+02 0.0032 28.3 17.4 123 216-351 154-285 (345)
66 cd01206 Homer Homer type EVH1 61.7 19 0.00042 27.9 4.6 40 106-157 11-51 (111)
67 PF13415 Kelch_3: Galactose ox 60.5 9.2 0.0002 24.7 2.5 21 106-126 19-39 (49)
68 COG4257 Vgb Streptogramin lyas 60.0 87 0.0019 28.9 9.1 103 234-352 125-227 (353)
69 smart00564 PQQ beta-propeller 58.0 26 0.00057 20.0 4.0 25 325-349 6-30 (33)
70 TIGR03866 PQQ_ABC_repeats PQQ- 57.8 1.4E+02 0.0031 26.8 15.1 109 234-356 180-293 (300)
71 TIGR03300 assembly_YfgL outer 56.6 1.9E+02 0.0041 27.7 13.5 109 210-349 59-169 (377)
72 KOG4152 Host cell transcriptio 56.2 2.3E+02 0.0049 28.6 14.0 66 106-189 57-124 (830)
73 PF01011 PQQ: PQQ enzyme repea 56.2 22 0.00048 21.5 3.6 25 326-350 1-25 (38)
74 PRK11028 6-phosphogluconolacto 55.8 1.8E+02 0.0039 27.2 15.2 96 234-344 58-157 (330)
75 COG1520 FOG: WD40-like repeat 55.3 2E+02 0.0043 27.6 12.2 111 212-349 64-177 (370)
76 KOG0291 WD40-repeat-containing 55.2 2.7E+02 0.0059 29.5 12.7 122 211-346 250-383 (893)
77 TIGR01640 F_box_assoc_1 F-box 54.6 1.5E+02 0.0033 26.1 14.7 120 214-353 3-137 (230)
78 PF02897 Peptidase_S9_N: Proly 54.5 2.1E+02 0.0047 27.8 22.6 121 214-351 285-412 (414)
79 TIGR03074 PQQ_membr_DH membran 52.3 3.2E+02 0.007 29.4 13.5 32 209-247 187-220 (764)
80 TIGR03075 PQQ_enz_alc_DH PQQ-d 51.7 2.8E+02 0.0061 28.3 13.8 119 210-349 63-195 (527)
81 KOG1274 WD40 repeat protein [G 50.3 3.6E+02 0.0078 29.1 18.8 73 268-346 149-221 (933)
82 PF10282 Lactonase: Lactonase, 49.3 2.4E+02 0.0052 26.8 21.1 120 216-351 202-332 (345)
83 TIGR03866 PQQ_ABC_repeats PQQ- 48.2 2.1E+02 0.0044 25.7 21.3 74 268-349 167-243 (300)
84 KOG2106 Uncharacterized conser 46.5 3.2E+02 0.007 27.5 13.8 67 281-366 391-457 (626)
85 PF13570 PQQ_3: PQQ-like domai 45.8 40 0.00086 20.5 3.6 21 324-344 20-40 (40)
86 TIGR03300 assembly_YfgL outer 44.4 2.9E+02 0.0063 26.4 19.8 24 96-119 65-88 (377)
87 KOG2321 WD40 repeat protein [G 43.5 1.9E+02 0.0041 29.5 9.3 98 235-346 157-261 (703)
88 PF03088 Str_synth: Strictosid 43.3 54 0.0012 24.5 4.5 16 335-350 37-52 (89)
89 PLN00181 protein SPA1-RELATED; 40.2 5.1E+02 0.011 28.0 24.3 101 234-346 641-741 (793)
90 KOG0265 U5 snRNP-specific prot 40.0 1.7E+02 0.0036 27.3 7.8 68 268-348 58-125 (338)
91 KOG2502 Tub family proteins [G 38.6 19 0.00041 33.9 1.7 36 2-37 46-89 (355)
92 KOG0266 WD40 repeat-containing 37.2 4.3E+02 0.0094 26.3 13.6 118 212-350 166-283 (456)
93 COG4946 Uncharacterized protei 36.3 41 0.0009 33.2 3.6 30 322-352 275-304 (668)
94 KOG0321 WD40 repeat-containing 33.6 1.9E+02 0.004 29.9 7.7 55 234-291 75-133 (720)
95 KOG0294 WD40 repeat-containing 32.7 4.3E+02 0.0093 24.9 12.5 109 211-346 47-160 (362)
96 KOG2055 WD40 repeat protein [G 32.5 1.6E+02 0.0035 29.1 6.8 100 281-391 236-340 (514)
97 COG3055 Uncharacterized protei 31.3 1.9E+02 0.0042 27.6 7.0 116 175-305 115-268 (381)
98 KOG0292 Vesicle coat complex C 30.0 2.7E+02 0.0059 30.2 8.4 91 265-368 212-304 (1202)
99 KOG0319 WD40-repeat-containing 27.8 7.5E+02 0.016 26.2 14.0 238 94-399 28-278 (775)
100 cd00837 EVH1 EVH1 (Enabled, Va 27.2 2.9E+02 0.0062 21.1 6.6 41 106-158 9-49 (104)
101 KOG4378 Nuclear protein COP1 [ 26.4 1.4E+02 0.0029 29.9 5.2 58 279-348 186-244 (673)
102 KOG2048 WD40 repeat protein [G 26.3 7.7E+02 0.017 25.8 10.7 132 186-349 419-554 (691)
103 PRK04043 tolB translocation pr 26.2 6.4E+02 0.014 24.8 13.4 102 234-353 214-319 (419)
104 PF03178 CPSF_A: CPSF A subuni 25.7 5.5E+02 0.012 23.9 14.4 106 233-361 62-177 (321)
105 KOG2321 WD40 repeat protein [G 25.1 5.1E+02 0.011 26.6 9.0 30 91-120 182-211 (703)
106 COG0823 TolB Periplasmic compo 24.3 3E+02 0.0065 27.2 7.5 75 268-354 248-325 (425)
107 KOG4152 Host cell transcriptio 23.7 7.6E+02 0.017 25.1 9.7 125 145-289 210-362 (830)
108 KOG1920 IkappaB kinase complex 23.4 1.1E+03 0.024 26.7 15.8 69 234-307 267-337 (1265)
109 TIGR02658 TTQ_MADH_Hv methylam 23.3 6.8E+02 0.015 24.1 14.5 117 215-350 204-338 (352)
110 PF08450 SGL: SMP-30/Gluconola 23.0 5.3E+02 0.011 22.8 15.9 110 216-350 11-129 (246)
111 KOG0649 WD40 repeat protein [G 23.0 5.8E+02 0.012 23.3 8.0 66 281-350 82-151 (325)
112 KOG3545 Olfactomedin and relat 22.9 5.8E+02 0.013 23.2 9.9 89 182-289 55-154 (249)
113 PRK04792 tolB translocation pr 22.4 7.7E+02 0.017 24.4 19.8 188 106-351 242-433 (448)
114 PRK11028 6-phosphogluconolacto 22.4 6.3E+02 0.014 23.4 15.4 74 268-351 238-314 (330)
115 PF08268 FBA_3: F-box associat 22.3 3E+02 0.0066 21.6 6.0 39 335-373 20-62 (129)
116 PF14339 DUF4394: Domain of un 22.2 2.5E+02 0.0055 25.3 5.8 55 94-155 36-92 (236)
117 KOG0289 mRNA splicing factor [ 22.1 3.5E+02 0.0075 26.7 7.0 63 268-344 358-420 (506)
118 PF15408 PH_7: Pleckstrin homo 22.0 29 0.00063 25.5 -0.1 23 20-42 78-100 (104)
119 cd00200 WD40 WD40 domain, foun 21.1 5.3E+02 0.012 22.1 19.6 94 234-347 116-211 (289)
120 KOG1310 WD40 repeat protein [G 20.6 5.1E+02 0.011 26.5 8.0 119 94-242 59-179 (758)
121 PF12768 Rax2: Cortical protei 20.5 3.3E+02 0.0072 25.2 6.5 68 171-250 14-81 (281)
122 KOG0316 Conserved WD40 repeat- 20.4 6.5E+02 0.014 22.8 14.8 183 96-347 28-217 (307)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=1.3e-36 Score=275.00 Aligned_cols=225 Identities=21% Similarity=0.369 Sum_probs=165.1
Q ss_pred EecccceEEEeeCCccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcce
Q 040444 92 FGSCNGLLALSNSDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFV 171 (409)
Q Consensus 92 ~~sc~GLl~l~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~ 171 (409)
++|||||||+... ..++||||+||+++.||+++..... .....+|||||+.+++||||++..... ...
T Consensus 1 ~~sCnGLlc~~~~-~~~~V~NP~T~~~~~LP~~~~~~~~----~~~~~~~~G~d~~~~~YKVv~~~~~~~-------~~~ 68 (230)
T TIGR01640 1 VVPCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRRSN----KESDTYFLGYDPIEKQYKVLCFSDRSG-------NRN 68 (230)
T ss_pred CcccceEEEEecC-CcEEEECCCCCCEEecCCCCCcccc----cccceEEEeecccCCcEEEEEEEeecC-------CCC
Confidence 4799999999864 7899999999999999986542111 022268999999999999999976432 113
Q ss_pred ecEEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCccee-eecC
Q 040444 172 EYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFR-LLPQ 250 (409)
Q Consensus 172 ~~~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~-~i~l 250 (409)
...++||++++++||.+...+. ... ....+|++||++||++....+ .....|++||+++|+|+ .+++
T Consensus 69 ~~~~~Vys~~~~~Wr~~~~~~~---------~~~--~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i~~ 136 (230)
T TIGR01640 69 QSEHQVYTLGSNSWRTIECSPP---------HHP--LKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIPL 136 (230)
T ss_pred CccEEEEEeCCCCccccccCCC---------Ccc--ccCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeeeec
Confidence 4689999999999999975441 111 123389999999999975432 11137999999999999 5999
Q ss_pred CCCCCCCCCceEEEEEeCCeEEEEEecCC-CeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEE
Q 040444 251 PNYGAREKDFVLDVGALEGHMCLMCNYDL-VKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVL 329 (409)
Q Consensus 251 P~~~~~~~~~~~~L~~~~G~L~~~~~~~~-~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~il 329 (409)
|. ..........|++++|+||++..... ..++||+|++++. ..|+|+++|+............|+++.. + ++|+
T Consensus 137 P~-~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~-~~W~k~~~i~~~~~~~~~~~~~~~~~~~--~-g~I~ 211 (230)
T TIGR01640 137 PC-GNSDSVDYLSLINYKGKLAVLKQKKDTNNFDLWVLNDAGK-QEWSKLFTVPIPPLPDLVDDNFLSGFTD--K-GEIV 211 (230)
T ss_pred Cc-cccccccceEEEEECCEEEEEEecCCCCcEEEEEECCCCC-CceeEEEEEcCcchhhhhhheeEeEEee--C-CEEE
Confidence 97 33112223579999999999988643 4799999999875 5599999998643332222256888886 5 6666
Q ss_pred EEEcC--cE-EEEEECCCC
Q 040444 330 LEVNG--EK-LVWYDWKRK 345 (409)
Q Consensus 330 l~~~~--~~-l~~yd~~~~ 345 (409)
+.... .. +++||++++
T Consensus 212 ~~~~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 212 LCCEDENPFYIFYYNVGEN 230 (230)
T ss_pred EEeCCCCceEEEEEeccCC
Confidence 66553 34 999999875
No 2
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.77 E-value=3.8e-17 Score=139.45 Aligned_cols=151 Identities=31% Similarity=0.538 Sum_probs=103.6
Q ss_pred eEEECCeEEEEeecCCCCCCccEEEEEECCCcce-eeecCCCCCCCCCCceEEEEEe-CCeEEEEEecCC-CeEEEEEEe
Q 040444 212 GVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEF-RLLPQPNYGAREKDFVLDVGAL-EGHMCLMCNYDL-VKVDVWMMK 288 (409)
Q Consensus 212 ~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~-~~i~lP~~~~~~~~~~~~L~~~-~G~L~~~~~~~~-~~~~IW~l~ 288 (409)
+|++||++||++...... ....|++||+++|+| ..+++|. ..........|.+. +|+||++..... ..++||+|+
T Consensus 1 gV~vnG~~hW~~~~~~~~-~~~~IlsFDl~~E~F~~~~~lP~-~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~ 78 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENND-EKDFILSFDLSTEKFGRSLPLPF-CNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMK 78 (164)
T ss_pred CEEECCEEEeeEEecCCC-CceEEEEEeccccccCCEECCCC-ccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEe
Confidence 589999999999876531 122799999999999 8899998 44212334567544 789999976433 379999999
Q ss_pred ecCC-CCceeEEEEeecccccCCcce-eeeEEEEeecCCCEEEEEEcC-------cEEEEEECCCCcEEEEEEeCC-CCc
Q 040444 289 EYGL-KESWSKMFSIDRCRSISSFRF-LRPLICSNEDGGDKVLLEVNG-------EKLVWYDWKRKKLKTVKIDGG-PDS 358 (409)
Q Consensus 289 ~~~~-~~~W~~~~~I~~~~~~~~~~~-~~p~~~~~~~~~~~ill~~~~-------~~l~~yd~~~~~~~~v~~~~~-~~~ 358 (409)
+++. .++|+|.++|++......... ..+..+.. +++.+++..+. ..++.|+ +++.++++.+... ..+
T Consensus 79 ~~~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~--~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~~~~~~~~ 155 (164)
T PF07734_consen 79 KYGYGKESWTKLFTIDLPPLPSLFFHFRNPSFFID--EEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDIEDKSSCW 155 (164)
T ss_pred eeccCcceEEEEEEEecCCCCCcccccccceEEEe--CCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEcccccCCCCC
Confidence 8753 689999999997655432211 12333333 44455554331 3477888 7788888887432 345
Q ss_pred eeEeEEEec
Q 040444 359 FVACICVES 367 (409)
Q Consensus 359 ~~~~~y~eS 367 (409)
...+.|+||
T Consensus 156 ~~~~~YvpS 164 (164)
T PF07734_consen 156 PSICNYVPS 164 (164)
T ss_pred CCEEEECCC
Confidence 667889987
No 3
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.67 E-value=1.3e-15 Score=124.65 Aligned_cols=113 Identities=24% Similarity=0.420 Sum_probs=81.8
Q ss_pred eEEECCeEEEEeecCCCCCCccEEEEEECCCcceeeecCCCCCCCCCCceEEEEEeCCeEEEEEecCCC---eEEEEEEe
Q 040444 212 GVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLV---KVDVWMMK 288 (409)
Q Consensus 212 ~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~---~~~IW~l~ 288 (409)
|+++||++||++.... .....|++||+++|+|+.|++|.... .......|.+++|+|+++...... .++||+|+
T Consensus 1 gicinGvly~~a~~~~--~~~~~IvsFDv~~E~f~~i~~P~~~~-~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLe 77 (129)
T PF08268_consen 1 GICINGVLYWLAWSED--SDNNVIVSFDVRSEKFRFIKLPEDPY-SSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLE 77 (129)
T ss_pred CEEECcEEEeEEEECC--CCCcEEEEEEcCCceEEEEEeeeeec-cccCccEEEEeCCeEEEEEecCCCCcceEEEEEee
Confidence 5899999999998722 24568999999999999999993112 223345899999999999887543 59999999
Q ss_pred ecCCCCceeEEEEeecccccC--CcceeeeEEEEeecCCCEEEE
Q 040444 289 EYGLKESWSKMFSIDRCRSIS--SFRFLRPLICSNEDGGDKVLL 330 (409)
Q Consensus 289 ~~~~~~~W~~~~~I~~~~~~~--~~~~~~p~~~~~~~~~~~ill 330 (409)
|++ +++|++.+.+-...... ......++++.+ +|+.|+.
T Consensus 78 D~~-k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~--~Geiv~~ 118 (129)
T PF08268_consen 78 DYE-KQEWSKKHIVLPPSWQHFVHDCDFSFVGVTD--TGEIVFA 118 (129)
T ss_pred ccc-cceEEEEEEECChHHhcccCCcEEEEEEEcC--CCEEEEE
Confidence 987 58999886643332211 114567788876 6554444
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.39 E-value=3e-11 Score=113.71 Aligned_cols=323 Identities=11% Similarity=0.064 Sum_probs=157.9
Q ss_pred CCCcHHHHHHHHhcCC-CCceeEEEecccchhhhcCChhHHHHHHhccccCCCcEEEEEec---C-cceeecCCCCCCCC
Q 040444 2 SKVPLDVVTGTLYQLP-VKTLLRYRCLSRPLCSIIDDPDFIKLQLNNSIATKSHLRLILKG---L-HLYSVELDSLDKAI 76 (409)
Q Consensus 2 ~~LP~Dll~eIL~rLP-~ksL~R~r~VCK~W~~li~~~~F~~~~~~~~~~~~~~~~l~~~~---~-~~~~~~~~~~~~~~ 76 (409)
++||+|||..|..||| .-++.|||+||++||+.+.... + .++-. +.+.++... + .+.+ +...+...
T Consensus 5 s~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~---~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~- 75 (373)
T PLN03215 5 STLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---K---KNPFR-TRPLILFNPINPSETLTD-DRSYISRP- 75 (373)
T ss_pred hhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---c---cCCcc-cccccccCcccCCCCccc-cccccccc-
Confidence 4799999999999998 6699999999999999877421 0 00000 011111111 0 0000 00000000
Q ss_pred CCCCCCCCCCCCcEE---EecccceEEEeeC---CccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEE-eeecC--
Q 040444 77 PFNHYPESIWTGTEV---FGSCNGLLALSNS---DQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGF-GHDLV-- 147 (409)
Q Consensus 77 ~~~~p~~~~~~~~~~---~~sc~GLl~l~~~---~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~-g~d~~-- 147 (409)
..+.....-+.+ .++..|+|.-... .+.+.+.||+++.-..+|+.....-+.........+.+ +.+..
T Consensus 76 ---~~~ls~~~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~~~~~~~~ 152 (373)
T PLN03215 76 ---GAFLSRAAFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVLDWAKRRE 152 (373)
T ss_pred ---cceeeeeEEEEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEEecccccc
Confidence 000000000111 1346888877553 36899999999997777753221110000000000111 11100
Q ss_pred -CCCEE-EEEEEEeecCCCCCCCcceecEEEEEEc------CCCceEEccccCcccccceeeeeeeeecccceEEECCeE
Q 040444 148 -SDDYK-VVRMVQFKKDEDDNLGCFVEYEVKVFSL------KNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVV 219 (409)
Q Consensus 148 -~~~yk-Vv~~~~~~~~~~~~~~~~~~~~~~vyss------~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~l 219 (409)
...|+ ++.+. ... .++ .....+-|+.- ..++|..++... . ....-|+.+|.+
T Consensus 153 ~~~~~~~~~~~~-~~~-~~~----~~~~vl~i~~~g~l~~w~~~~Wt~l~~~~----------~----~~~DIi~~kGkf 212 (373)
T PLN03215 153 TRPGYQRSALVK-VKE-GDN----HRDGVLGIGRDGKINYWDGNVLKALKQMG----------Y----HFSDIIVHKGQT 212 (373)
T ss_pred cccceeEEEEEE-eec-CCC----cceEEEEEeecCcEeeecCCeeeEccCCC----------c----eeeEEEEECCEE
Confidence 01131 11111 111 000 00011112211 247888886433 1 124458999999
Q ss_pred EEEeecCCCCCCccEEEEEECCCcceeeecCCCCC-CCCC--CceEEEEEeCCeEEEEEecC----------------CC
Q 040444 220 HWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYG-AREK--DFVLDVGALEGHMCLMCNYD----------------LV 280 (409)
Q Consensus 220 ywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~-~~~~--~~~~~L~~~~G~L~~~~~~~----------------~~ 280 (409)
|-+...+ .+.++|..-+ ...+..+-.+ .... .....|++..|.|.+|.... ..
T Consensus 213 YAvD~~G-------~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~ 284 (373)
T PLN03215 213 YALDSIG-------IVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTV 284 (373)
T ss_pred EEEcCCC-------eEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCccccccccccccccee
Confidence 9884433 3777774321 1222211100 0000 12347999999999997631 12
Q ss_pred eEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEe----ecCCCEEEEEEcCcEEEEEECCCCcEEEEEEeCC-
Q 040444 281 KVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSN----EDGGDKVLLEVNGEKLVWYDWKRKKLKTVKIDGG- 355 (409)
Q Consensus 281 ~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~----~~~~~~ill~~~~~~l~~yd~~~~~~~~v~~~~~- 355 (409)
.++|+.++.. ...|+++.+++-..+.-... ..+++.. +-.++.|++.. +.....||++.++...+...-.
T Consensus 285 ~f~VfklD~~--~~~WveV~sLgd~aLFlG~~--~s~sv~a~e~pG~k~NcIYFtd-d~~~~v~~~~dg~~~~~~~~~~~ 359 (373)
T PLN03215 285 GFKVYKFDDE--LAKWMEVKTLGDNAFVMATD--TCFSVLAHEFYGCLPNSIYFTE-DTMPKVFKLDNGNGSSIETTISE 359 (373)
T ss_pred EEEEEEEcCC--CCcEEEecccCCeEEEEECC--ccEEEecCCCCCccCCEEEEEC-CCcceEEECCCCCccceEeecCc
Confidence 6888988753 47899998876432221111 1111111 11458899875 4458999999999766543211
Q ss_pred CCceeEeEEEeccc
Q 040444 356 PDSFVACICVESLI 369 (409)
Q Consensus 356 ~~~~~~~~y~eSlv 369 (409)
...-+..+|++|++
T Consensus 360 ~~~~~~~~~~~~~~ 373 (373)
T PLN03215 360 SSQSSFEMFVPSFL 373 (373)
T ss_pred cccchheeeccccC
Confidence 11223567777764
No 5
>PHA02713 hypothetical protein; Provisional
Probab=98.90 E-value=2e-07 Score=94.89 Aligned_cols=201 Identities=11% Similarity=0.126 Sum_probs=123.5
Q ss_pred ccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEEEEEcCCCce
Q 040444 106 QDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRSW 185 (409)
Q Consensus 106 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~vyss~t~~W 185 (409)
..+...||.+++|..+|+++..+. ...... ++ =||..++.... ......+++|+..+++|
T Consensus 320 ~~v~~Yd~~~n~W~~~~~m~~~R~------~~~~~~--~~-----g~IYviGG~~~-------~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 320 NKVYKINIENKIHVELPPMIKNRC------RFSLAV--ID-----DTIYAIGGQNG-------TNVERTIECYTMGDDKW 379 (557)
T ss_pred ceEEEEECCCCeEeeCCCCcchhh------ceeEEE--EC-----CEEEEECCcCC-------CCCCceEEEEECCCCeE
Confidence 357889999999999998775321 111111 11 14555554321 11234799999999999
Q ss_pred EEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCC-----------------CCccEEEEEECCCcceeee
Q 040444 186 TRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEF-----------------GIGNLIVAFDLGLEEFRLL 248 (409)
Q Consensus 186 r~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-----------------~~~~~Il~fDl~~e~~~~i 248 (409)
..++.+|. .. ....++.++|.+|-+....... .....+.+||+.+++|+.+
T Consensus 380 ~~~~~mp~----------~r--~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v 447 (557)
T PHA02713 380 KMLPDMPI----------AL--SSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL 447 (557)
T ss_pred EECCCCCc----------cc--ccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec
Confidence 99988872 22 1234578899999987643210 0124689999999999976
Q ss_pred c-CCCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEEEeecCCC--CceeEEEEeecccccCCcceeeeEEEEeecCC
Q 040444 249 P-QPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLK--ESWSKMFSIDRCRSISSFRFLRPLICSNEDGG 325 (409)
Q Consensus 249 ~-lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~~--~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~ 325 (409)
+ +|. +. ....+++.+|+|++++.........=..+-|... ..|+..-.++.... ...+++. +
T Consensus 448 ~~m~~-~r----~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~------~~~~~~~----~ 512 (557)
T PHA02713 448 PNFWT-GT----IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS------ALHTILH----D 512 (557)
T ss_pred CCCCc-cc----ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc------cceeEEE----C
Confidence 4 322 22 1235789999999998754211111112334333 47998876654321 2223333 3
Q ss_pred CEEEEEEc-Cc--EEEEEECCCCcEEEEEEe
Q 040444 326 DKVLLEVN-GE--KLVWYDWKRKKLKTVKID 353 (409)
Q Consensus 326 ~~ill~~~-~~--~l~~yd~~~~~~~~v~~~ 353 (409)
+.|++..+ ++ .+-.||+.|++|+.+.-+
T Consensus 513 ~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 513 NTIMMLHCYESYMLQDTFNVYTYEWNHICHQ 543 (557)
T ss_pred CEEEEEeeecceeehhhcCcccccccchhhh
Confidence 56666533 22 377999999999988544
No 6
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.81 E-value=6.1e-10 Score=73.56 Aligned_cols=42 Identities=21% Similarity=0.350 Sum_probs=36.6
Q ss_pred CCCCcHHHHHHHHhcCCCCceeEEEecccchhhhcCChhHHH
Q 040444 1 MSKVPLDVVTGTLYQLPVKTLLRYRCLSRPLCSIIDDPDFIK 42 (409)
Q Consensus 1 m~~LP~Dll~eIL~rLP~ksL~R~r~VCK~W~~li~~~~F~~ 42 (409)
+++||+|++.+||+.||+++++++++|||+|+.++.++.+-+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence 578999999999999999999999999999999999885544
No 7
>PHA03098 kelch-like protein; Provisional
Probab=98.71 E-value=1.3e-06 Score=89.09 Aligned_cols=196 Identities=11% Similarity=0.081 Sum_probs=119.0
Q ss_pred cEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEEEEEcCCCceE
Q 040444 107 DIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRSWT 186 (409)
Q Consensus 107 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~vyss~t~~Wr 186 (409)
.++.+||.|++|..+|+++..+. ...... ++ + ++..++.... ......+++|+..+++|+
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~------~~~~~~--~~----~-~lyv~GG~~~-------~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRK------NPGVTV--FN----N-RIYVIGGIYN-------SISLNTVESWKPGESKWR 371 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccc------cceEEE--EC----C-EEEEEeCCCC-------CEecceEEEEcCCCCcee
Confidence 68899999999999998764321 111111 11 1 3555443221 123457899999999999
Q ss_pred EccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcceeeecCCCCCCCCCCceEEEEE
Q 040444 187 RVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDFVLDVGA 266 (409)
Q Consensus 187 ~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~~L~~ 266 (409)
.++.+| ... ....++.++|.+|-+............+..||+.+++|..++..+.+. .....+.
T Consensus 372 ~~~~lp----------~~r--~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r----~~~~~~~ 435 (534)
T PHA03098 372 EEPPLI----------FPR--YNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH----YGGCAIY 435 (534)
T ss_pred eCCCcC----------cCC--ccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc----cCceEEE
Confidence 998777 222 234457789999998764322112346899999999999864322122 1224577
Q ss_pred eCCeEEEEEecCCC-----eEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEc------Cc
Q 040444 267 LEGHMCLMCNYDLV-----KVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVN------GE 335 (409)
Q Consensus 267 ~~G~L~~~~~~~~~-----~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~------~~ 335 (409)
.+|+|+++...... .-.+|..+-. ...|+..-.++.+.. ....+.. + +.|++..+ ..
T Consensus 436 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~--~~~W~~~~~~~~~r~------~~~~~~~---~-~~iyv~GG~~~~~~~~ 503 (534)
T PHA03098 436 HDGKIYVIGGISYIDNIKVYNIVESYNPV--TNKWTELSSLNFPRI------NASLCIF---N-NKIYVVGGDKYEYYIN 503 (534)
T ss_pred ECCEEEEECCccCCCCCcccceEEEecCC--CCceeeCCCCCcccc------cceEEEE---C-CEEEEEcCCcCCcccc
Confidence 89999998865321 1235665532 367988654432211 1112222 3 45655432 13
Q ss_pred EEEEEECCCCcEEEE
Q 040444 336 KLVWYDWKRKKLKTV 350 (409)
Q Consensus 336 ~l~~yd~~~~~~~~v 350 (409)
.+..||+++++|+.+
T Consensus 504 ~v~~yd~~~~~W~~~ 518 (534)
T PHA03098 504 EIEVYDDKTNTWTLF 518 (534)
T ss_pred eeEEEeCCCCEEEec
Confidence 589999999999877
No 8
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.69 E-value=1e-06 Score=89.54 Aligned_cols=197 Identities=15% Similarity=0.164 Sum_probs=127.6
Q ss_pred ccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEEEEEcCCCce
Q 040444 106 QDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRSW 185 (409)
Q Consensus 106 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~vyss~t~~W 185 (409)
+.+...||.+++|..+|++...+. .+|++ .-..++.+++.... ......+|.|+..++.|
T Consensus 349 ~~ve~YD~~~~~W~~~a~M~~~R~---------~~~v~----~l~g~iYavGG~dg-------~~~l~svE~YDp~~~~W 408 (571)
T KOG4441|consen 349 SSVERYDPRTNQWTPVAPMNTKRS---------DFGVA----VLDGKLYAVGGFDG-------EKSLNSVECYDPVTNKW 408 (571)
T ss_pred ceEEEecCCCCceeccCCccCccc---------cceeE----EECCEEEEEecccc-------ccccccEEEecCCCCcc
Confidence 468899999999999998875421 12222 11235555554432 23455899999999999
Q ss_pred EEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcceeee-cCCCCCCCCCCceEEE
Q 040444 186 TRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLL-PQPNYGAREKDFVLDV 264 (409)
Q Consensus 186 r~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i-~lP~~~~~~~~~~~~L 264 (409)
..++.++. .. ....++.++|.+|-+............+.+||..+++|+.+ +++. . .....+
T Consensus 409 ~~va~m~~----------~r--~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~-~----R~~~g~ 471 (571)
T KOG4441|consen 409 TPVAPMLT----------RR--SGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT-R----RSGFGV 471 (571)
T ss_pred cccCCCCc----------ce--eeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccc-c----cccceE
Confidence 99998772 11 23445789999999987654432446799999999999965 3332 1 123358
Q ss_pred EEeCCeEEEEEecCCCeEEEEEEeecC-CCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcC------cEE
Q 040444 265 GALEGHMCLMCNYDLVKVDVWMMKEYG-LKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNG------EKL 337 (409)
Q Consensus 265 ~~~~G~L~~~~~~~~~~~~IW~l~~~~-~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~------~~l 337 (409)
..++|+|+++...... -.+=..+-|. ....|+.+..+..... ..++.. -++.+++..+. ..+
T Consensus 472 a~~~~~iYvvGG~~~~-~~~~~VE~ydp~~~~W~~v~~m~~~rs--------~~g~~~--~~~~ly~vGG~~~~~~l~~v 540 (571)
T KOG4441|consen 472 AVLNGKIYVVGGFDGT-SALSSVERYDPETNQWTMVAPMTSPRS--------AVGVVV--LGGKLYAVGGFDGNNNLNTV 540 (571)
T ss_pred EEECCEEEEECCccCC-CccceEEEEcCCCCceeEcccCccccc--------cccEEE--ECCEEEEEecccCcccccee
Confidence 9999999999887541 1111133232 2367998855544321 223333 34666665321 348
Q ss_pred EEEECCCCcEEEE
Q 040444 338 VWYDWKRKKLKTV 350 (409)
Q Consensus 338 ~~yd~~~~~~~~v 350 (409)
-.||+++++|+..
T Consensus 541 e~ydp~~d~W~~~ 553 (571)
T KOG4441|consen 541 ECYDPETDTWTEV 553 (571)
T ss_pred EEcCCCCCceeeC
Confidence 8999999999986
No 9
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.62 E-value=2.8e-09 Score=70.76 Aligned_cols=43 Identities=30% Similarity=0.414 Sum_probs=36.9
Q ss_pred CCCcHHHHHHHHhcCCCCceeEEEecccchhhhcCChhHHHHH
Q 040444 2 SKVPLDVVTGTLYQLPVKTLLRYRCLSRPLCSIIDDPDFIKLQ 44 (409)
Q Consensus 2 ~~LP~Dll~eIL~rLP~ksL~R~r~VCK~W~~li~~~~F~~~~ 44 (409)
++||+|++.+||.+||++++++++.|||+|++++.++.+-..+
T Consensus 4 ~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 4 SDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred HHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 4699999999999999999999999999999999999886654
No 10
>PHA02713 hypothetical protein; Provisional
Probab=98.59 E-value=5.7e-06 Score=84.34 Aligned_cols=199 Identities=9% Similarity=0.103 Sum_probs=118.5
Q ss_pred cEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEEEEEcCCCceE
Q 040444 107 DIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRSWT 186 (409)
Q Consensus 107 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~vyss~t~~Wr 186 (409)
.+..+||.|++|..++++|.... . .+.+.- ++ +|..++.... . ......++.|+..++.|.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~-------~--~~~a~l---~~-~IYviGG~~~--~----~~~~~~v~~Yd~~~n~W~ 333 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHII-------N--YASAIV---DN-EIIIAGGYNF--N----NPSLNKVYKINIENKIHV 333 (557)
T ss_pred CEEEEeCCCCeEEECCCCCcccc-------c--eEEEEE---CC-EEEEEcCCCC--C----CCccceEEEEECCCCeEe
Confidence 46778999999999988764321 1 111111 11 4555543211 0 112357899999999999
Q ss_pred EccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcceeeecCCCCCCCCCCceEEEEE
Q 040444 187 RVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDFVLDVGA 266 (409)
Q Consensus 187 ~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~~L~~ 266 (409)
.++.+|. .. .....+.++|.+|-+...... .....+-.||..+++|..++..+... .....+.
T Consensus 334 ~~~~m~~----------~R--~~~~~~~~~g~IYviGG~~~~-~~~~sve~Ydp~~~~W~~~~~mp~~r----~~~~~~~ 396 (557)
T PHA02713 334 ELPPMIK----------NR--CRFSLAVIDDTIYAIGGQNGT-NVERTIECYTMGDDKWKMLPDMPIAL----SSYGMCV 396 (557)
T ss_pred eCCCCcc----------hh--hceeEEEECCEEEEECCcCCC-CCCceEEEEECCCCeEEECCCCCccc----ccccEEE
Confidence 9988872 21 134567899999999875422 12345899999999999864322122 1224678
Q ss_pred eCCeEEEEEecCCCe----------E-------EEEEEeecCC-CCceeEEEEeecccccCCcceeeeEEEEeecCCCEE
Q 040444 267 LEGHMCLMCNYDLVK----------V-------DVWMMKEYGL-KESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKV 328 (409)
Q Consensus 267 ~~G~L~~~~~~~~~~----------~-------~IW~l~~~~~-~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~i 328 (409)
++|+|++++...... + ..=.++-|.. ...|+..-.+..... ...+++. ++.|
T Consensus 397 ~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~------~~~~~~~----~~~I 466 (557)
T PHA02713 397 LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI------RPGVVSH----KDDI 466 (557)
T ss_pred ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccc------cCcEEEE----CCEE
Confidence 899999998753210 0 0111222322 367987665543221 1223333 2567
Q ss_pred EEEEcC-------cEEEEEECCC-CcEEEEE
Q 040444 329 LLEVNG-------EKLVWYDWKR-KKLKTVK 351 (409)
Q Consensus 329 ll~~~~-------~~l~~yd~~~-~~~~~v~ 351 (409)
++..+. ..+..||+++ ++|+.+.
T Consensus 467 Yv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 467 YVVCDIKDEKNVKTCIFRYNTNTYNGWELIT 497 (557)
T ss_pred EEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence 665431 2367999999 8999773
No 11
>PLN02153 epithiospecifier protein
Probab=98.56 E-value=2.1e-05 Score=75.38 Aligned_cols=214 Identities=13% Similarity=0.047 Sum_probs=116.4
Q ss_pred ccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEEEEEcCCCce
Q 040444 106 QDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRSW 185 (409)
Q Consensus 106 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~vyss~t~~W 185 (409)
+.++++||.+++|..+|+.... +.... .......+ + =+++.++.... ......+++|+..+++|
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~-p~~~~-~~~~~~~~--~-----~~iyv~GG~~~-------~~~~~~v~~yd~~t~~W 113 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDV-PRISC-LGVRMVAV--G-----TKLYIFGGRDE-------KREFSDFYSYDTVKNEW 113 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCC-CCCcc-CceEEEEE--C-----CEEEEECCCCC-------CCccCcEEEEECCCCEE
Confidence 3689999999999998865321 11000 01111111 1 14555543221 11234689999999999
Q ss_pred EEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCC-----CCccEEEEEECCCcceeeecCCCCCCCCCCc
Q 040444 186 TRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEF-----GIGNLIVAFDLGLEEFRLLPQPNYGAREKDF 260 (409)
Q Consensus 186 r~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-----~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~ 260 (409)
..++.++..... ... ....++..+|.+|-+....... .....+.+||+.+.+|..++.+.... ....
T Consensus 114 ~~~~~~~~~~~p-----~~R--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~-~~r~ 185 (341)
T PLN02153 114 TFLTKLDEEGGP-----EAR--TFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENF-EKRG 185 (341)
T ss_pred EEeccCCCCCCC-----CCc--eeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCC-CCCC
Confidence 988755210000 111 1334577889999887643210 01235889999999999875432011 0111
Q ss_pred eEEEEEeCCeEEEEEecCC----------CeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEE
Q 040444 261 VLDVGALEGHMCLMCNYDL----------VKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLL 330 (409)
Q Consensus 261 ~~~L~~~~G~L~~~~~~~~----------~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill 330 (409)
...++..+|+|+++..... ..-+||+++-. ...|+++....... ..+......+. ++.|++
T Consensus 186 ~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~--~~~W~~~~~~g~~P---~~r~~~~~~~~----~~~iyv 256 (341)
T PLN02153 186 GAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPA--SGKWTEVETTGAKP---SARSVFAHAVV----GKYIII 256 (341)
T ss_pred cceEEEECCeEEEEeccccccccCCccceecCceEEEEcC--CCcEEeccccCCCC---CCcceeeeEEE----CCEEEE
Confidence 2246778999998865321 01245665532 36799875432100 01111122222 245555
Q ss_pred EEcC---------------cEEEEEECCCCcEEEEEE
Q 040444 331 EVNG---------------EKLVWYDWKRKKLKTVKI 352 (409)
Q Consensus 331 ~~~~---------------~~l~~yd~~~~~~~~v~~ 352 (409)
-... ..++.||+++++|+.+.-
T Consensus 257 ~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 257 FGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGE 293 (341)
T ss_pred ECcccCCccccccccccccccEEEEEcCccEEEeccC
Confidence 3221 258999999999998853
No 12
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.54 E-value=5.4e-06 Score=84.41 Aligned_cols=199 Identities=14% Similarity=0.097 Sum_probs=129.7
Q ss_pred ccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEEEEEcCCCce
Q 040444 106 QDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRSW 185 (409)
Q Consensus 106 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~vyss~t~~W 185 (409)
+.+...||.+++|..+.+++..+. ..|.+.-. + +|..++.... +......++.|++.+++|
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~---------~~~~~~~~---~-~lYv~GG~~~------~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRC---------RVGVAVLN---G-KLYVVGGYDS------GSDRLSSVERYDPRTNQW 361 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccc---------cccEEEEC---C-EEEEEccccC------CCcccceEEEecCCCCce
Confidence 456788999999999998875422 12222211 1 4555554331 123457899999999999
Q ss_pred EEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcceeeec-CCCCCCCCCCceEEE
Q 040444 186 TRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLP-QPNYGAREKDFVLDV 264 (409)
Q Consensus 186 r~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~-lP~~~~~~~~~~~~L 264 (409)
..++.+.. .. .....+.++|.+|-+...+.. ..-..+-.||..+++|..+. ++. .. .....
T Consensus 362 ~~~a~M~~----------~R--~~~~v~~l~g~iYavGG~dg~-~~l~svE~YDp~~~~W~~va~m~~-~r----~~~gv 423 (571)
T KOG4441|consen 362 TPVAPMNT----------KR--SDFGVAVLDGKLYAVGGFDGE-KSLNSVECYDPVTNKWTPVAPMLT-RR----SGHGV 423 (571)
T ss_pred eccCCccC----------cc--ccceeEEECCEEEEEeccccc-cccccEEEecCCCCcccccCCCCc-ce----eeeEE
Confidence 99988772 11 123456899999999877632 23346999999999999875 443 22 23468
Q ss_pred EEeCCeEEEEEecCCCeEEEEEEeecC-CCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcC------cEE
Q 040444 265 GALEGHMCLMCNYDLVKVDVWMMKEYG-LKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNG------EKL 337 (409)
Q Consensus 265 ~~~~G~L~~~~~~~~~~~~IW~l~~~~-~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~------~~l 337 (409)
++.+|+|+++.......-.+=.++-|. ....|+.+-.+..... ...+++.. +.|+...+. ..+
T Consensus 424 ~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~------~~g~a~~~----~~iYvvGG~~~~~~~~~V 493 (571)
T KOG4441|consen 424 AVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS------GFGVAVLN----GKIYVVGGFDGTSALSSV 493 (571)
T ss_pred EEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc------cceEEEEC----CEEEEECCccCCCccceE
Confidence 899999999998644321222223332 2478999887766432 22345443 667765432 237
Q ss_pred EEEECCCCcEEEEE
Q 040444 338 VWYDWKRKKLKTVK 351 (409)
Q Consensus 338 ~~yd~~~~~~~~v~ 351 (409)
-.||+++++|+.+.
T Consensus 494 E~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 494 ERYDPETNQWTMVA 507 (571)
T ss_pred EEEcCCCCceeEcc
Confidence 88999999999884
No 13
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.53 E-value=8.1e-09 Score=65.98 Aligned_cols=39 Identities=41% Similarity=0.576 Sum_probs=36.8
Q ss_pred CcHHHHHHHHhcCCCCceeEEEecccchhhhcCChhHHH
Q 040444 4 VPLDVVTGTLYQLPVKTLLRYRCLSRPLCSIIDDPDFIK 42 (409)
Q Consensus 4 LP~Dll~eIL~rLP~ksL~R~r~VCK~W~~li~~~~F~~ 42 (409)
||+|++.+||.+|+++++.++++|||+|+.++.++.|.+
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999988754
No 14
>PHA02790 Kelch-like protein; Provisional
Probab=98.52 E-value=8.2e-06 Score=81.86 Aligned_cols=183 Identities=10% Similarity=0.061 Sum_probs=114.4
Q ss_pred cEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEEEEEcCCCceE
Q 040444 107 DIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRSWT 186 (409)
Q Consensus 107 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~vyss~t~~Wr 186 (409)
.+..+||.+++|..+|+++..+. ..... ..+ =+|..++.... ...++.|+..+++|.
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~------~~~~v--~~~-----~~iYviGG~~~----------~~sve~ydp~~n~W~ 344 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRL------YASGV--PAN-----NKLYVVGGLPN----------PTSVERWFHGDAAWV 344 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhh------cceEE--EEC-----CEEEEECCcCC----------CCceEEEECCCCeEE
Confidence 56778999999999998765321 11111 111 14555543211 135789999999999
Q ss_pred EccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcceeeecCCCCCCCCCCceEEEEE
Q 040444 187 RVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDFVLDVGA 266 (409)
Q Consensus 187 ~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~~L~~ 266 (409)
.++.+|. .. ....++.++|.+|-+...... ...+..||..+++|+.++.++.+. .....+.
T Consensus 345 ~~~~l~~----------~r--~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~m~~~r----~~~~~~~ 405 (480)
T PHA02790 345 NMPSLLK----------PR--CNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPSTYYPH----YKSCALV 405 (480)
T ss_pred ECCCCCC----------CC--cccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCCCCCcc----ccceEEE
Confidence 9988872 22 134567899999998765422 234788999999999875444122 1235678
Q ss_pred eCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcC------cEEEEE
Q 040444 267 LEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNG------EKLVWY 340 (409)
Q Consensus 267 ~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~------~~l~~y 340 (409)
.+|+|+++... .++. +.. ...|+..-.++.+.. ....++. ++.|++..+. ..+-.|
T Consensus 406 ~~~~IYv~GG~----~e~y---dp~-~~~W~~~~~m~~~r~------~~~~~v~----~~~IYviGG~~~~~~~~~ve~Y 467 (480)
T PHA02790 406 FGRRLFLVGRN----AEFY---CES-SNTWTLIDDPIYPRD------NPELIIV----DNKLLLIGGFYRGSYIDTIEVY 467 (480)
T ss_pred ECCEEEEECCc----eEEe---cCC-CCcEeEcCCCCCCcc------ccEEEEE----CCEEEEECCcCCCcccceEEEE
Confidence 99999998742 2222 122 467998765543221 1223333 2567665321 248899
Q ss_pred ECCCCcEEE
Q 040444 341 DWKRKKLKT 349 (409)
Q Consensus 341 d~~~~~~~~ 349 (409)
|+++++|+.
T Consensus 468 d~~~~~W~~ 476 (480)
T PHA02790 468 NNRTYSWNI 476 (480)
T ss_pred ECCCCeEEe
Confidence 999999975
No 15
>PLN02193 nitrile-specifier protein
Probab=98.46 E-value=4.7e-05 Score=76.18 Aligned_cols=209 Identities=8% Similarity=0.009 Sum_probs=118.2
Q ss_pred cEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEE-eeecCCCCEEEEEEEEeecCCCCCCCcceecEEEEEEcCCCce
Q 040444 107 DIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGF-GHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRSW 185 (409)
Q Consensus 107 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~-g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~vyss~t~~W 185 (409)
.+++.||.+++|..+|+.... |.. ....+.+ .++ + ++..++.... ......+++|+..+++|
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~-P~~----~~~~~~~v~~~----~-~lYvfGG~~~-------~~~~ndv~~yD~~t~~W 256 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDV-PHL----SCLGVRMVSIG----S-TLYVFGGRDA-------SRQYNGFYSFDTTTNEW 256 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCC-CCC----cccceEEEEEC----C-EEEEECCCCC-------CCCCccEEEEECCCCEE
Confidence 588999999999988753211 110 0001111 111 1 3444433211 11234688999999999
Q ss_pred EEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcceeeecCCCCCCCCCCceEEEE
Q 040444 186 TRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDFVLDVG 265 (409)
Q Consensus 186 r~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~~L~ 265 (409)
+.+..++... ... ....++.+++.+|-+...... .....+.+||+.+.+|..++.|. ..........++
T Consensus 257 ~~l~~~~~~P-------~~R--~~h~~~~~~~~iYv~GG~~~~-~~~~~~~~yd~~t~~W~~~~~~~-~~~~~R~~~~~~ 325 (470)
T PLN02193 257 KLLTPVEEGP-------TPR--SFHSMAADEENVYVFGGVSAT-ARLKTLDSYNIVDKKWFHCSTPG-DSFSIRGGAGLE 325 (470)
T ss_pred EEcCcCCCCC-------CCc--cceEEEEECCEEEEECCCCCC-CCcceEEEEECCCCEEEeCCCCC-CCCCCCCCcEEE
Confidence 9987552100 111 123456788999988764321 12345889999999999887643 110111123567
Q ss_pred EeCCeEEEEEecCC-CeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcC----------
Q 040444 266 ALEGHMCLMCNYDL-VKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNG---------- 334 (409)
Q Consensus 266 ~~~G~L~~~~~~~~-~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~---------- 334 (409)
..+|+++++..... ..-++|+++-. ...|+++..+..... .+.....+.. + +.|++-...
T Consensus 326 ~~~gkiyviGG~~g~~~~dv~~yD~~--t~~W~~~~~~g~~P~---~R~~~~~~~~---~-~~iyv~GG~~~~~~~~~~~ 396 (470)
T PLN02193 326 VVQGKVWVVYGFNGCEVDDVHYYDPV--QDKWTQVETFGVRPS---ERSVFASAAV---G-KHIVIFGGEIAMDPLAHVG 396 (470)
T ss_pred EECCcEEEEECCCCCccCceEEEECC--CCEEEEeccCCCCCC---CcceeEEEEE---C-CEEEEECCccCCccccccC
Confidence 78999998876532 13567887742 467998765421111 1112222222 2 445543221
Q ss_pred -----cEEEEEECCCCcEEEEEE
Q 040444 335 -----EKLVWYDWKRKKLKTVKI 352 (409)
Q Consensus 335 -----~~l~~yd~~~~~~~~v~~ 352 (409)
..++.||+.+++|+.+..
T Consensus 397 ~~~~~ndv~~~D~~t~~W~~~~~ 419 (470)
T PLN02193 397 PGQLTDGTFALDTETLQWERLDK 419 (470)
T ss_pred ccceeccEEEEEcCcCEEEEccc
Confidence 138999999999998853
No 16
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.45 E-value=4.5e-05 Score=72.54 Aligned_cols=112 Identities=19% Similarity=0.217 Sum_probs=73.4
Q ss_pred ecEEEEEEcCCCce----EEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcceee
Q 040444 172 EYEVKVFSLKNRSW----TRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRL 247 (409)
Q Consensus 172 ~~~~~vyss~t~~W----r~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~ 247 (409)
...++.|+..++.| +.++.+| ... ....++.++|.+|-+...... .....+..||+.+++|..
T Consensus 87 ~~~v~~~d~~~~~w~~~~~~~~~lp----------~~~--~~~~~~~~~~~iYv~GG~~~~-~~~~~v~~yd~~~~~W~~ 153 (323)
T TIGR03548 87 FSSVYRITLDESKEELICETIGNLP----------FTF--ENGSACYKDGTLYVGGGNRNG-KPSNKSYLFNLETQEWFE 153 (323)
T ss_pred ceeEEEEEEcCCceeeeeeEcCCCC----------cCc--cCceEEEECCEEEEEeCcCCC-ccCceEEEEcCCCCCeeE
Confidence 34688899999887 6666666 222 234567889999998764321 123469999999999998
Q ss_pred ec-CCCCCCCCCCceEEEEEeCCeEEEEEecCCC-eEEEEEEeecCCCCceeEEEEe
Q 040444 248 LP-QPNYGAREKDFVLDVGALEGHMCLMCNYDLV-KVDVWMMKEYGLKESWSKMFSI 302 (409)
Q Consensus 248 i~-lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~-~~~IW~l~~~~~~~~W~~~~~I 302 (409)
++ +|.... .....+..+|+|+++...... ..++|..+-. ...|+++..+
T Consensus 154 ~~~~p~~~r----~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~--~~~W~~~~~~ 204 (323)
T TIGR03548 154 LPDFPGEPR----VQPVCVKLQNELYVFGGGSNIAYTDGYKYSPK--KNQWQKVADP 204 (323)
T ss_pred CCCCCCCCC----CcceEEEECCEEEEEcCCCCccccceEEEecC--CCeeEECCCC
Confidence 75 554111 122456789999999875422 3456666532 3679876543
No 17
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.35 E-value=0.00024 Score=68.29 Aligned_cols=170 Identities=15% Similarity=0.099 Sum_probs=96.4
Q ss_pred ccEEEEc--ccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEEEEEcCCC
Q 040444 106 QDIALFN--PATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNR 183 (409)
Q Consensus 106 ~~~~V~N--P~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~vyss~t~ 183 (409)
..+++.+ |.+++|..+|+++.. ++ ....... .+ =+|..++........ ........++.|+..++
T Consensus 29 ~~~~~~d~~~~~~~W~~l~~~p~~-~R----~~~~~~~--~~-----~~iYv~GG~~~~~~~-~~~~~~~~v~~Yd~~~~ 95 (346)
T TIGR03547 29 TSWYKLDLKKPSKGWQKIADFPGG-PR----NQAVAAA--ID-----GKLYVFGGIGKANSE-GSPQVFDDVYRYDPKKN 95 (346)
T ss_pred CeeEEEECCCCCCCceECCCCCCC-Cc----ccceEEE--EC-----CEEEEEeCCCCCCCC-CcceecccEEEEECCCC
Confidence 4577777 478899999987631 11 0111111 11 145555543210000 00012347899999999
Q ss_pred ceEEccc-cCcccccceeeeeeeeecccceE-EECCeEEEEeecCCCC--------------------------------
Q 040444 184 SWTRVKK-LPNYLRFMFQFYFHLLHRRGYGV-YVNGVVHWVSPRRPEF-------------------------------- 229 (409)
Q Consensus 184 ~Wr~~~~-~p~~~~~~~~~~~~~~~~~~~~v-~~~G~lywl~~~~~~~-------------------------------- 229 (409)
+|+.++. +| ... ....++ .++|.+|-+.......
T Consensus 96 ~W~~~~~~~p----------~~~--~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (346)
T TIGR03547 96 SWQKLDTRSP----------VGL--LGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPED 163 (346)
T ss_pred EEecCCCCCC----------Ccc--cceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhH
Confidence 9999863 33 111 112223 5799999887543110
Q ss_pred -CCccEEEEEECCCcceeeec-CCCCCCCCCCceEEEEEeCCeEEEEEecCC---CeEEEEEEeecCCCCceeEEEEeec
Q 040444 230 -GIGNLIVAFDLGLEEFRLLP-QPNYGAREKDFVLDVGALEGHMCLMCNYDL---VKVDVWMMKEYGLKESWSKMFSIDR 304 (409)
Q Consensus 230 -~~~~~Il~fDl~~e~~~~i~-lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~---~~~~IW~l~~~~~~~~W~~~~~I~~ 304 (409)
.....+..||..+.+|+.++ +|. .. .....++..+|+|+++..... ...++|..+-......|+..-.++.
T Consensus 164 ~~~~~~v~~YDp~t~~W~~~~~~p~-~~---r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~ 239 (346)
T TIGR03547 164 YFWNKNVLSYDPSTNQWRNLGENPF-LG---TAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPP 239 (346)
T ss_pred cCccceEEEEECCCCceeECccCCC-Cc---CCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCC
Confidence 00146999999999999874 342 11 122356788999999987532 2356676552112367988766644
No 18
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.20 E-value=0.00052 Score=66.73 Aligned_cols=183 Identities=15% Similarity=0.090 Sum_probs=101.6
Q ss_pred ecccceEEEee--CCccEEEEccc--ccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCC
Q 040444 93 GSCNGLLALSN--SDQDIALFNPA--TRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLG 168 (409)
Q Consensus 93 ~sc~GLl~l~~--~~~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~ 168 (409)
+..++-|.+.. ....+++.++. +++|..+|+.+.. +. .......+ + + ++..++.... ......
T Consensus 35 ~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~-~r----~~~~~v~~--~----~-~IYV~GG~~~-~~~~~~ 101 (376)
T PRK14131 35 AIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGG-PR----EQAVAAFI--D----G-KLYVFGGIGK-TNSEGS 101 (376)
T ss_pred EEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCC-Cc----ccceEEEE--C----C-EEEEEcCCCC-CCCCCc
Confidence 44566654432 23456777764 5789999876531 11 01111111 1 1 3444443211 000000
Q ss_pred cceecEEEEEEcCCCceEEcccc-CcccccceeeeeeeeecccceEE-ECCeEEEEeecCCCC-----------------
Q 040444 169 CFVEYEVKVFSLKNRSWTRVKKL-PNYLRFMFQFYFHLLHRRGYGVY-VNGVVHWVSPRRPEF----------------- 229 (409)
Q Consensus 169 ~~~~~~~~vyss~t~~Wr~~~~~-p~~~~~~~~~~~~~~~~~~~~v~-~~G~lywl~~~~~~~----------------- 229 (409)
......+++|+..+++|+.++.. | ... ....++. .+|.||-+.......
T Consensus 102 ~~~~~~v~~YD~~~n~W~~~~~~~p----------~~~--~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~ 169 (376)
T PRK14131 102 PQVFDDVYKYDPKTNSWQKLDTRSP----------VGL--AGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTP 169 (376)
T ss_pred eeEcccEEEEeCCCCEEEeCCCCCC----------Ccc--cceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhh
Confidence 11235789999999999998742 3 111 1122333 799999987643100
Q ss_pred ----------------CCccEEEEEECCCcceeeec-CCCCCCCCCCceEEEEEeCCeEEEEEecC---CCeEEEEEEee
Q 040444 230 ----------------GIGNLIVAFDLGLEEFRLLP-QPNYGAREKDFVLDVGALEGHMCLMCNYD---LVKVDVWMMKE 289 (409)
Q Consensus 230 ----------------~~~~~Il~fDl~~e~~~~i~-lP~~~~~~~~~~~~L~~~~G~L~~~~~~~---~~~~~IW~l~~ 289 (409)
.....+..||..+.+|..+. +|.... ....++..+++|+++.... ....++|..+-
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~----~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~ 245 (376)
T PRK14131 170 KDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGT----AGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKF 245 (376)
T ss_pred hhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCC----CcceEEEECCEEEEEeeeECCCcCChhheEEEe
Confidence 01246999999999999874 442111 1224677899999998742 23567777653
Q ss_pred cCCCCceeEEEEeec
Q 040444 290 YGLKESWSKMFSIDR 304 (409)
Q Consensus 290 ~~~~~~W~~~~~I~~ 304 (409)
......|+++..++.
T Consensus 246 ~~~~~~W~~~~~~p~ 260 (376)
T PRK14131 246 TGNNLKWQKLPDLPP 260 (376)
T ss_pred cCCCcceeecCCCCC
Confidence 223467998776654
No 19
>PLN02153 epithiospecifier protein
Probab=98.19 E-value=0.00046 Score=66.16 Aligned_cols=171 Identities=11% Similarity=0.080 Sum_probs=96.2
Q ss_pred ccEEEEcccccceeccCCCCCCC-CCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEEEEEcCCCc
Q 040444 106 QDIALFNPATRQLFKLPVEYIDL-PDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRS 184 (409)
Q Consensus 106 ~~~~V~NP~T~~~~~LP~~~~~~-~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~vyss~t~~ 184 (409)
..++++||.|++|..+|++.... |. .....+.... ++ |++.++........ ........+++|+..+++
T Consensus 101 ~~v~~yd~~t~~W~~~~~~~~~~~p~-----~R~~~~~~~~---~~-~iyv~GG~~~~~~~-~~~~~~~~v~~yd~~~~~ 170 (341)
T PLN02153 101 SDFYSYDTVKNEWTFLTKLDEEGGPE-----ARTFHSMASD---EN-HVYVFGGVSKGGLM-KTPERFRTIEAYNIADGK 170 (341)
T ss_pred CcEEEEECCCCEEEEeccCCCCCCCC-----CceeeEEEEE---CC-EEEEECCccCCCcc-CCCcccceEEEEECCCCe
Confidence 36899999999999998652110 10 1111111111 11 45555433210000 000112468999999999
Q ss_pred eEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCC-------CCCccEEEEEECCCcceeeec----CCCC
Q 040444 185 WTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPE-------FGIGNLIVAFDLGLEEFRLLP----QPNY 253 (409)
Q Consensus 185 Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~-------~~~~~~Il~fDl~~e~~~~i~----lP~~ 253 (409)
|..++.+... .. .......+.++|.+|-+...... ......+..||+.+.+|..++ .|.
T Consensus 171 W~~l~~~~~~--------~~-~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~- 240 (341)
T PLN02153 171 WVQLPDPGEN--------FE-KRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPS- 240 (341)
T ss_pred EeeCCCCCCC--------CC-CCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCC-
Confidence 9998754200 00 00123356789999987542210 001245899999999999875 243
Q ss_pred CCCCCCceEEEEEeCCeEEEEEecCC---------C--eEEEEEEeecCCCCceeEEEEe
Q 040444 254 GAREKDFVLDVGALEGHMCLMCNYDL---------V--KVDVWMMKEYGLKESWSKMFSI 302 (409)
Q Consensus 254 ~~~~~~~~~~L~~~~G~L~~~~~~~~---------~--~~~IW~l~~~~~~~~W~~~~~I 302 (409)
.. .....+..+++|+++..... . .-+||.++-. ...|+++...
T Consensus 241 ~r----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~--~~~W~~~~~~ 294 (341)
T PLN02153 241 AR----SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTE--TLVWEKLGEC 294 (341)
T ss_pred Cc----ceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcC--ccEEEeccCC
Confidence 22 12345678899999887521 1 2379998853 4679887644
No 20
>PHA02790 Kelch-like protein; Provisional
Probab=98.14 E-value=0.00017 Score=72.34 Aligned_cols=139 Identities=6% Similarity=0.046 Sum_probs=90.6
Q ss_pred ecccceEEEeeC---CccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCc
Q 040444 93 GSCNGLLALSNS---DQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGC 169 (409)
Q Consensus 93 ~sc~GLl~l~~~---~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~ 169 (409)
.+.+|.|-+..+ ...+..++|.+++|..+|+++..+. ... +..++ =+|..++....
T Consensus 315 v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~------~~~--~~~~~-----g~IYviGG~~~-------- 373 (480)
T PHA02790 315 VPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRC------NPA--VASIN-----NVIYVIGGHSE-------- 373 (480)
T ss_pred EEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCc------ccE--EEEEC-----CEEEEecCcCC--------
Confidence 456777654432 2357788999999999998775321 111 11122 14555543211
Q ss_pred ceecEEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcceeeec
Q 040444 170 FVEYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLP 249 (409)
Q Consensus 170 ~~~~~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~ 249 (409)
....++.|+.++++|..++.++ .... ...++.++|.+|-+... .-.||..+++|+.++
T Consensus 374 -~~~~ve~ydp~~~~W~~~~~m~----------~~r~--~~~~~~~~~~IYv~GG~---------~e~ydp~~~~W~~~~ 431 (480)
T PHA02790 374 -TDTTTEYLLPNHDQWQFGPSTY----------YPHY--KSCALVFGRRLFLVGRN---------AEFYCESSNTWTLID 431 (480)
T ss_pred -CCccEEEEeCCCCEEEeCCCCC----------Cccc--cceEEEECCEEEEECCc---------eEEecCCCCcEeEcC
Confidence 1246889999999999998777 2221 24557899999988632 567999999999874
Q ss_pred CCCCCCCCCCceEEEEEeCCeEEEEEecC
Q 040444 250 QPNYGAREKDFVLDVGALEGHMCLMCNYD 278 (409)
Q Consensus 250 lP~~~~~~~~~~~~L~~~~G~L~~~~~~~ 278 (409)
..+... ....+++.+|+|++++...
T Consensus 432 ~m~~~r----~~~~~~v~~~~IYviGG~~ 456 (480)
T PHA02790 432 DPIYPR----DNPELIIVDNKLLLIGGFY 456 (480)
T ss_pred CCCCCc----cccEEEEECCEEEEECCcC
Confidence 332122 2336789999999998764
No 21
>PHA03098 kelch-like protein; Provisional
Probab=98.05 E-value=0.00031 Score=71.74 Aligned_cols=172 Identities=10% Similarity=0.154 Sum_probs=104.1
Q ss_pred ecccceEEEeeC------CccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCC
Q 040444 93 GSCNGLLALSNS------DQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDN 166 (409)
Q Consensus 93 ~sc~GLl~l~~~------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~ 166 (409)
.+.+|-|.+..+ ...+.++||.|++|..+|+++..+. ..... .++ + ++..++.... .
T Consensus 339 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~------~~~~~--~~~----~-~iYv~GG~~~--~-- 401 (534)
T PHA03098 339 TVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRY------NPCVV--NVN----N-LIYVIGGISK--N-- 401 (534)
T ss_pred EEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCc------cceEE--EEC----C-EEEEECCcCC--C--
Confidence 344565544321 2367889999999999988765321 11111 111 1 4555443211 0
Q ss_pred CCcceecEEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCC--CCccEEEEEECCCcc
Q 040444 167 LGCFVEYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEF--GIGNLIVAFDLGLEE 244 (409)
Q Consensus 167 ~~~~~~~~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~~~~Il~fDl~~e~ 244 (409)
......+++|+..+++|..++.+|. .. ....++..+|.+|-+....... .....+..||+.+++
T Consensus 402 --~~~~~~v~~yd~~t~~W~~~~~~p~----------~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 402 --DELLKTVECFSLNTNKWSKGSPLPI----------SH--YGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred --CcccceEEEEeCCCCeeeecCCCCc----------cc--cCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCc
Confidence 1123578999999999999987772 22 2345678899999887543211 112349999999999
Q ss_pred eeeecCCCCCCCCCCceEEEEEeCCeEEEEEecCCC--eEEEEEEeecCCCCceeEEEE
Q 040444 245 FRLLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLV--KVDVWMMKEYGLKESWSKMFS 301 (409)
Q Consensus 245 ~~~i~lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~--~~~IW~l~~~~~~~~W~~~~~ 301 (409)
|..++..+... ....++..+|+|+++...... .-.||..+-. ...|.....
T Consensus 468 W~~~~~~~~~r----~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~--~~~W~~~~~ 520 (534)
T PHA03098 468 WTELSSLNFPR----INASLCIFNNKIYVVGGDKYEYYINEIEVYDDK--TNTWTLFCK 520 (534)
T ss_pred eeeCCCCCccc----ccceEEEECCEEEEEcCCcCCcccceeEEEeCC--CCEEEecCC
Confidence 99875322121 122456779999998875422 2356666532 367987654
No 22
>PLN02193 nitrile-specifier protein
Probab=97.93 E-value=0.0018 Score=64.86 Aligned_cols=158 Identities=17% Similarity=0.141 Sum_probs=91.7
Q ss_pred cEEEEEEcCCCceEEccc---cCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcceeeec
Q 040444 173 YEVKVFSLKNRSWTRVKK---LPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLP 249 (409)
Q Consensus 173 ~~~~vyss~t~~Wr~~~~---~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~ 249 (409)
..+++|+..+++|..++. .| .. ......++.+++.||-+...... .....+.+||+.+.+|+.+.
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P----------~~-~~~~~~~v~~~~~lYvfGG~~~~-~~~ndv~~yD~~t~~W~~l~ 260 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVP----------HL-SCLGVRMVSIGSTLYVFGGRDAS-RQYNGFYSFDTTTNEWKLLT 260 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCC----------CC-cccceEEEEECCEEEEECCCCCC-CCCccEEEEECCCCEEEEcC
Confidence 468999999999998753 23 10 01123457889999988764322 12245899999999999874
Q ss_pred CCCCCCCCCCceEEEEEeCCeEEEEEecCCC--eEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCE
Q 040444 250 QPNYGAREKDFVLDVGALEGHMCLMCNYDLV--KVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDK 327 (409)
Q Consensus 250 lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~--~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ 327 (409)
...... .......++..+++|+++...... .-++|+.+-. ...|+....... ....+....+.+. + +.
T Consensus 261 ~~~~~P-~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~--t~~W~~~~~~~~---~~~~R~~~~~~~~---~-gk 330 (470)
T PLN02193 261 PVEEGP-TPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIV--DKKWFHCSTPGD---SFSIRGGAGLEVV---Q-GK 330 (470)
T ss_pred cCCCCC-CCccceEEEEECCEEEEECCCCCCCCcceEEEEECC--CCEEEeCCCCCC---CCCCCCCcEEEEE---C-Cc
Confidence 321000 011123566789999998775321 2345655532 367986432110 0011112223333 3 34
Q ss_pred EEEEEc-----CcEEEEEECCCCcEEEEEE
Q 040444 328 VLLEVN-----GEKLVWYDWKRKKLKTVKI 352 (409)
Q Consensus 328 ill~~~-----~~~l~~yd~~~~~~~~v~~ 352 (409)
|++... ...+..||+++++|+.+..
T Consensus 331 iyviGG~~g~~~~dv~~yD~~t~~W~~~~~ 360 (470)
T PLN02193 331 VWVVYGFNGCEVDDVHYYDPVQDKWTQVET 360 (470)
T ss_pred EEEEECCCCCccCceEEEECCCCEEEEecc
Confidence 554322 1359999999999998854
No 23
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=97.71 E-value=0.014 Score=56.67 Aligned_cols=93 Identities=13% Similarity=0.058 Sum_probs=58.1
Q ss_pred cEEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCC--CCccEEEEEECCCcceeeec-
Q 040444 173 YEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEF--GIGNLIVAFDLGLEEFRLLP- 249 (409)
Q Consensus 173 ~~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~~~~Il~fDl~~e~~~~i~- 249 (409)
..+++|+..++.|..++.+| .... .....+.+++.||.+....... ........||.++.+|..++
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p----------~~~~-~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~ 257 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESP----------FLGT-AGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPD 257 (376)
T ss_pred ceEEEEECCCCeeeECCcCC----------CCCC-CcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCC
Confidence 46899999999999998777 2111 1234567899999988642211 11123456677889998763
Q ss_pred CCCCCCC---CCC-ceEEEEEeCCeEEEEEec
Q 040444 250 QPNYGAR---EKD-FVLDVGALEGHMCLMCNY 277 (409)
Q Consensus 250 lP~~~~~---~~~-~~~~L~~~~G~L~~~~~~ 277 (409)
+|. ... ... .....+..+|+|+++...
T Consensus 258 ~p~-~~~~~~~~~~~~~~a~~~~~~iyv~GG~ 288 (376)
T PRK14131 258 LPP-APGGSSQEGVAGAFAGYSNGVLLVAGGA 288 (376)
T ss_pred CCC-CCcCCcCCccceEeceeECCEEEEeecc
Confidence 443 210 011 112346789999998764
No 24
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=97.64 E-value=0.012 Score=56.01 Aligned_cols=140 Identities=6% Similarity=-0.037 Sum_probs=81.6
Q ss_pred ccEEEEcccccce----eccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEEEEEcC
Q 040444 106 QDIALFNPATRQL----FKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLK 181 (409)
Q Consensus 106 ~~~~V~NP~T~~~----~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~vyss~ 181 (409)
..++.+|+.+++| ..+|++|..+. ... +..++ + +|..++.... ......+++|+..
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~------~~~--~~~~~----~-~iYv~GG~~~-------~~~~~~v~~yd~~ 147 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLPFTFE------NGS--ACYKD----G-TLYVGGGNRN-------GKPSNKSYLFNLE 147 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCCcCcc------Cce--EEEEC----C-EEEEEeCcCC-------CccCceEEEEcCC
Confidence 4678889999987 67777654321 111 11112 1 4555543211 0123578999999
Q ss_pred CCceEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcceeeecCCCCC-C-CCCC
Q 040444 182 NRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYG-A-REKD 259 (409)
Q Consensus 182 t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~-~-~~~~ 259 (409)
+++|..++.+|.. .. .....+.++|.+|-+...... ....+.+||+.+++|..++..... . ....
T Consensus 148 ~~~W~~~~~~p~~---------~r--~~~~~~~~~~~iYv~GG~~~~--~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~ 214 (323)
T TIGR03548 148 TQEWFELPDFPGE---------PR--VQPVCVKLQNELYVFGGGSNI--AYTDGYKYSPKKNQWQKVADPTTDSEPISLL 214 (323)
T ss_pred CCCeeECCCCCCC---------CC--CcceEEEECCEEEEEcCCCCc--cccceEEEecCCCeeEECCCCCCCCCceecc
Confidence 9999999876621 11 123446789999988765321 112378999999999987532100 0 0001
Q ss_pred ceEEEEEeCCeEEEEEecC
Q 040444 260 FVLDVGALEGHMCLMCNYD 278 (409)
Q Consensus 260 ~~~~L~~~~G~L~~~~~~~ 278 (409)
....+...+|+|+++....
T Consensus 215 ~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 215 GAASIKINESLLLCIGGFN 233 (323)
T ss_pred ceeEEEECCCEEEEECCcC
Confidence 1123455678998887653
No 25
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=97.61 E-value=0.025 Score=54.22 Aligned_cols=93 Identities=13% Similarity=0.059 Sum_probs=56.5
Q ss_pred cEEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEE--CCCcceeee-c
Q 040444 173 YEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFD--LGLEEFRLL-P 249 (409)
Q Consensus 173 ~~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fD--l~~e~~~~i-~ 249 (409)
..+++|+..+++|..++.+| .... .....+.++|.||-+............+..|| ..+.+|..+ +
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p----------~~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~ 236 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENP----------FLGT-AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPP 236 (346)
T ss_pred ceEEEEECCCCceeECccCC----------CCcC-CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCC
Confidence 47999999999999998777 2111 12345678999999876432111112244454 566789875 3
Q ss_pred CCCCCC-C-CCC-ceEEEEEeCCeEEEEEec
Q 040444 250 QPNYGA-R-EKD-FVLDVGALEGHMCLMCNY 277 (409)
Q Consensus 250 lP~~~~-~-~~~-~~~~L~~~~G~L~~~~~~ 277 (409)
+|. .. . ... .....+.++|+|+++...
T Consensus 237 m~~-~r~~~~~~~~~~~a~~~~~~Iyv~GG~ 266 (346)
T TIGR03547 237 LPP-PKSSSQEGLAGAFAGISNGVLLVAGGA 266 (346)
T ss_pred CCC-CCCCccccccEEeeeEECCEEEEeecC
Confidence 333 11 0 011 122366789999999865
No 26
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.51 E-value=0.0056 Score=57.81 Aligned_cols=221 Identities=14% Similarity=0.146 Sum_probs=117.1
Q ss_pred ccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEEEEEcCCCce
Q 040444 106 QDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRSW 185 (409)
Q Consensus 106 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~vyss~t~~W 185 (409)
+.+|+.|--+.+|+.+-.+..+.|+. .+.....++. +-.+.-+.... ..-+.......+.+|++.++.|
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRs-------shq~va~~s~--~l~~fGGEfaS--Pnq~qF~HYkD~W~fd~~trkw 166 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRS-------SHQAVAVPSN--ILWLFGGEFAS--PNQEQFHHYKDLWLFDLKTRKW 166 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCc-------cceeEEeccC--eEEEeccccCC--cchhhhhhhhheeeeeeccchh
Confidence 46899999999999874433322221 1122222222 22222222211 1100111234567999999999
Q ss_pred EEcc--ccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcceeeecCCCCCC--CCCCce
Q 040444 186 TRVK--KLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGA--REKDFV 261 (409)
Q Consensus 186 r~~~--~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~--~~~~~~ 261 (409)
..+. ..|.... . ..+......-+.+ |-+|=..... ..-+-+.+||+.+=+|+.+..+. .. ...++
T Consensus 167 eql~~~g~PS~RS-G----HRMvawK~~lilF-GGFhd~nr~y---~YyNDvy~FdLdtykW~Klepsg-a~PtpRSGc- 235 (521)
T KOG1230|consen 167 EQLEFGGGPSPRS-G----HRMVAWKRQLILF-GGFHDSNRDY---IYYNDVYAFDLDTYKWSKLEPSG-AGPTPRSGC- 235 (521)
T ss_pred eeeccCCCCCCCc-c----ceeEEeeeeEEEE-cceecCCCce---EEeeeeEEEeccceeeeeccCCC-CCCCCCCcc-
Confidence 9885 3332110 0 0111112222233 3333221111 11234999999999999987654 11 12333
Q ss_pred EEEEEe-CCeEEEEEecC-----------CCeEEEEEEeecC---CCCceeEEEEeecccccCCcceeeeEEEEeecCCC
Q 040444 262 LDVGAL-EGHMCLMCNYD-----------LVKVDVWMMKEYG---LKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGD 326 (409)
Q Consensus 262 ~~L~~~-~G~L~~~~~~~-----------~~~~~IW~l~~~~---~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~ 326 (409)
++.+. +|.+.+...+. ...-++|.|+... ++-.|+++..+....-. +...-+++++ ++.
T Consensus 236 -q~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPsp---Rsgfsv~va~--n~k 309 (521)
T KOG1230|consen 236 -QFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSP---RSGFSVAVAK--NHK 309 (521)
T ss_pred -eEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCC---CCceeEEEec--CCc
Confidence 44555 78887776542 2267999998432 23467887766654321 2223457777 666
Q ss_pred EEEEEE--c------------CcEEEEEECCCCcEEEEEEeC
Q 040444 327 KVLLEV--N------------GEKLVWYDWKRKKLKTVKIDG 354 (409)
Q Consensus 327 ~ill~~--~------------~~~l~~yd~~~~~~~~v~~~~ 354 (409)
.+++.. + ...|+.||+..++|.+.++.+
T Consensus 310 al~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq~ 351 (521)
T KOG1230|consen 310 ALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQLQG 351 (521)
T ss_pred eEEecceecccccchhhhhhhhhhhhheecccchhhHhhhcc
Confidence 666642 1 135999999999998776654
No 27
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.31 E-value=0.0031 Score=58.01 Aligned_cols=44 Identities=14% Similarity=0.174 Sum_probs=39.1
Q ss_pred CCCc----HHHHHHHHhcCCCCceeEEEecccchhhhcCChhHHHHHH
Q 040444 2 SKVP----LDVVTGTLYQLPVKTLLRYRCLSRPLCSIIDDPDFIKLQL 45 (409)
Q Consensus 2 ~~LP----~Dll~eIL~rLP~ksL~R~r~VCK~W~~li~~~~F~~~~~ 45 (409)
+.|| +++.+.||+.|...+|+.|..|||+|+.+++++..-+...
T Consensus 76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLi 123 (499)
T KOG0281|consen 76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLI 123 (499)
T ss_pred HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 4689 9999999999999999999999999999999987655443
No 28
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.07 E-value=0.022 Score=50.83 Aligned_cols=228 Identities=12% Similarity=0.129 Sum_probs=119.6
Q ss_pred ecccceEEEeeCCccEEEEcccccceeccCCCCCC--CCCCCCCCCeeEEE---EeeecCCCCEEEEEEEEeecCCCCCC
Q 040444 93 GSCNGLLALSNSDQDIALFNPATRQLFKLPVEYID--LPDKSCIRGFVFYG---FGHDLVSDDYKVVRMVQFKKDEDDNL 167 (409)
Q Consensus 93 ~sc~GLl~l~~~~~~~~V~NP~T~~~~~LP~~~~~--~~~~~~~~~~~~~~---~g~d~~~~~ykVv~~~~~~~~~~~~~ 167 (409)
|-|.|-.--....-.+.|.|-.+-+|.++|+.-.. .+......-+..+| ..|+. |+..-+....
T Consensus 31 GYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d-----~~yvWGGRND------ 99 (392)
T KOG4693|consen 31 GYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQD-----KAYVWGGRND------ 99 (392)
T ss_pred CcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcc-----eEEEEcCccC------
Confidence 34555443332334789999999999999983211 11111000111222 11111 2222222211
Q ss_pred CcceecEEEEEEcCCCceEEcc---ccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCC-CCccEEEEEECCCc
Q 040444 168 GCFVEYEVKVFSLKNRSWTRVK---KLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEF-GIGNLIVAFDLGLE 243 (409)
Q Consensus 168 ~~~~~~~~~vyss~t~~Wr~~~---~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~~~Il~fDl~~e 243 (409)
..+....+.-|+.+++.|.... .+|.. . ...+++..+..+|-+....... .....+.+||+.++
T Consensus 100 ~egaCN~Ly~fDp~t~~W~~p~v~G~vPga----------R--DGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~Tm 167 (392)
T KOG4693|consen 100 DEGACNLLYEFDPETNVWKKPEVEGFVPGA----------R--DGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATM 167 (392)
T ss_pred cccccceeeeeccccccccccceeeecCCc----------c--CCceeeEECcEEEEecChHHHHHhhhccceeEeccce
Confidence 1235667888999999998754 34421 1 2355667777888776443211 12235999999999
Q ss_pred ceeeec---CCCCCCCCCCceEEEEEeCCeEEEEEecCCC-----------eEEEEEEeecCCCCceeEEEEeecccccC
Q 040444 244 EFRLLP---QPNYGAREKDFVLDVGALEGHMCLMCNYDLV-----------KVDVWMMKEYGLKESWSKMFSIDRCRSIS 309 (409)
Q Consensus 244 ~~~~i~---lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~-----------~~~IW~l~~~~~~~~W~~~~~I~~~~~~~ 309 (409)
+|+.|. .|+ .- ..|. .-.+++|..++.....+. .-.|=.|+-. .+.|.....-.+...
T Consensus 168 tWr~~~Tkg~Pp-rw--RDFH-~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~--T~aW~r~p~~~~~P~-- 239 (392)
T KOG4693|consen 168 TWREMHTKGDPP-RW--RDFH-TASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLA--TGAWTRTPENTMKPG-- 239 (392)
T ss_pred eeeehhccCCCc-hh--hhhh-hhhhccceEEEeccccccCCCccchhhhhcceeEEEecc--ccccccCCCCCcCCC--
Confidence 999974 344 22 2222 345567888877665320 2233344431 356877533222111
Q ss_pred CcceeeeEEEEeecCCCEEEEE-------EcCcEEEEEECCCCcEEEEEEeCC
Q 040444 310 SFRFLRPLICSNEDGGDKVLLE-------VNGEKLVWYDWKRKKLKTVKIDGG 355 (409)
Q Consensus 310 ~~~~~~p~~~~~~~~~~~ill~-------~~~~~l~~yd~~~~~~~~v~~~~~ 355 (409)
..+....+++ ||...++. .....|+.+|++|..|+.|...|.
T Consensus 240 GRRSHS~fvY----ng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk 288 (392)
T KOG4693|consen 240 GRRSHSTFVY----NGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGK 288 (392)
T ss_pred cccccceEEE----cceEEEecccchhhhhhhcceeecccccchheeeeccCC
Confidence 1111111222 43333332 122459999999999999987664
No 29
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.00014 Score=65.84 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=36.0
Q ss_pred CCCcHHHHHHHHhcCCCCceeEEEecccchhhhcCChhH
Q 040444 2 SKVPLDVVTGTLYQLPVKTLLRYRCLSRPLCSIIDDPDF 40 (409)
Q Consensus 2 ~~LP~Dll~eIL~rLP~ksL~R~r~VCK~W~~li~~~~F 40 (409)
.+|||||+..||+.||.|+|++...|||+|+++.++...
T Consensus 99 ~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~l 137 (419)
T KOG2120|consen 99 DSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESL 137 (419)
T ss_pred ccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccc
Confidence 479999999999999999999999999999999887653
No 30
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=96.61 E-value=0.024 Score=50.67 Aligned_cols=115 Identities=15% Similarity=0.252 Sum_probs=74.7
Q ss_pred eecEEEEEEcCCCceEEccc---cCcccccceeeeeeeeecccceEEECCeEEEEeecCCCC--------CCccEEEEEE
Q 040444 171 VEYEVKVFSLKNRSWTRVKK---LPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEF--------GIGNLIVAFD 239 (409)
Q Consensus 171 ~~~~~~vyss~t~~Wr~~~~---~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~--------~~~~~Il~fD 239 (409)
....+++++..|-.||.+.. +|.| .....++..+|.+|-+....... ..-+.|++||
T Consensus 155 FS~d~h~ld~~TmtWr~~~Tkg~Pprw------------RDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld 222 (392)
T KOG4693|consen 155 FSQDTHVLDFATMTWREMHTKGDPPRW------------RDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALD 222 (392)
T ss_pred hhccceeEeccceeeeehhccCCCchh------------hhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEe
Confidence 45678899999999999863 3321 13455677889999887654321 1234699999
Q ss_pred CCCcceeeecCCCCCCC-CCCceEEEEEeCCeEEEEEecCC----CeEEEEEEeecCCCCceeEEEE
Q 040444 240 LGLEEFRLLPQPNYGAR-EKDFVLDVGALEGHMCLMCNYDL----VKVDVWMMKEYGLKESWSKMFS 301 (409)
Q Consensus 240 l~~e~~~~i~lP~~~~~-~~~~~~~L~~~~G~L~~~~~~~~----~~~~IW~l~~~~~~~~W~~~~~ 301 (409)
+.++.|..- |+.... ...-.....+++|.+++...+.. ..-++|..+-- ..-|.++..
T Consensus 223 ~~T~aW~r~--p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~--t~~W~~I~~ 285 (392)
T KOG4693|consen 223 LATGAWTRT--PENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPK--TSMWSVISV 285 (392)
T ss_pred ccccccccC--CCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccc--cchheeeec
Confidence 999999864 321110 01111256789999999988743 25678888752 366877553
No 31
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.46 E-value=0.15 Score=51.21 Aligned_cols=178 Identities=16% Similarity=0.146 Sum_probs=100.8
Q ss_pred cceEEEeeCC------ccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCc
Q 040444 96 NGLLALSNSD------QDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGC 169 (409)
Q Consensus 96 ~GLl~l~~~~------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~ 169 (409)
+.|+++.... ..+...|+.|++|..+.+.....+... ...+...| + ||+.++.... . .
T Consensus 123 ~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~---~Hs~~~~g------~-~l~vfGG~~~-~-----~ 186 (482)
T KOG0379|consen 123 DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRA---GHSATVVG------T-KLVVFGGIGG-T-----G 186 (482)
T ss_pred CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcc---cceEEEEC------C-EEEEECCccC-c-----c
Confidence 5566655433 378999999999999876544222111 11222222 2 4555443322 1 1
Q ss_pred ceecEEEEEEcCCCceEEccccCcccccceeeeeeeeecccceE-EECCeEEEEeecCCCCCCccEEEEEECCCcceeee
Q 040444 170 FVEYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGV-YVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLL 248 (409)
Q Consensus 170 ~~~~~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v-~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i 248 (409)
.....++||+..+.+|..+...... .. .....++ .+++.++-+.....+......+..||+.+.+|..
T Consensus 187 ~~~ndl~i~d~~~~~W~~~~~~g~~---------P~-pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~- 255 (482)
T KOG0379|consen 187 DSLNDLHIYDLETSTWSELDTQGEA---------PS-PRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKL- 255 (482)
T ss_pred cceeeeeeeccccccceecccCCCC---------CC-CCCCceEEEECCeEEEEeccccCCceecceEeeecccceeee-
Confidence 1456889999999999998643210 00 1223334 4444444333333122233459999999988883
Q ss_pred cCCCCC-CCCCCceEEEEEeCCeEEEEEecCC----CeEEEEEEeecCCCCceeEEEEee
Q 040444 249 PQPNYG-AREKDFVLDVGALEGHMCLMCNYDL----VKVDVWMMKEYGLKESWSKMFSID 303 (409)
Q Consensus 249 ~lP~~~-~~~~~~~~~L~~~~G~L~~~~~~~~----~~~~IW~l~~~~~~~~W~~~~~I~ 303 (409)
+|..+ .-...+...++..+..+.++..... .--++|.|+.. ...|.+.....
T Consensus 256 -~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~--~~~w~~~~~~~ 312 (482)
T KOG0379|consen 256 -LPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLE--TLVWSKVESVG 312 (482)
T ss_pred -ccccCCCCCCcceeeeEEECCEEEEEcCCccccccccccccccccc--ccceeeeeccc
Confidence 22211 1112234456677888888877644 25678888753 47798887776
No 32
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.26 E-value=0.78 Score=46.16 Aligned_cols=209 Identities=15% Similarity=0.088 Sum_probs=116.3
Q ss_pred cEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEEEEEcCCCceE
Q 040444 107 DIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRSWT 186 (409)
Q Consensus 107 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~vyss~t~~Wr 186 (409)
.++|+|-.++.|......-....... ......++ + +++.++.... . ......+..|+..|+.|+
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~---g~~~~~~~------~-~l~lfGG~~~-~-----~~~~~~l~~~d~~t~~W~ 152 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRY---GHSLSAVG------D-KLYLFGGTDK-K-----YRNLNELHSLDLSTRTWS 152 (482)
T ss_pred eeEEeecCCcccccccccCCCCCccc---ceeEEEEC------C-eEEEEccccC-C-----CCChhheEeccCCCCcEE
Confidence 49999999988887654322211111 11222222 2 3334333221 0 122457889999999999
Q ss_pred Eccc---cCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcceeeecCCCCCCCCCCceEE
Q 040444 187 RVKK---LPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDFVLD 263 (409)
Q Consensus 187 ~~~~---~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~~ 263 (409)
.+.. .|+. .....++.++-.+|............+.+.+||+.+.+|..+....... ...+...
T Consensus 153 ~l~~~~~~P~~------------r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P-~pR~gH~ 219 (482)
T KOG0379|consen 153 LLSPTGDPPPP------------RAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAP-SPRYGHA 219 (482)
T ss_pred EecCcCCCCCC------------cccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCC-CCCCCce
Confidence 8753 2311 1223445555566666554433223567999999999999976543111 1112235
Q ss_pred EEEeCCeEEEEEecC-CC--eEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEc-------
Q 040444 264 VGALEGHMCLMCNYD-LV--KVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVN------- 333 (409)
Q Consensus 264 L~~~~G~L~~~~~~~-~~--~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~------- 333 (409)
++..+++++++.... .. -=++|.|+-.. ..|.+.-... ..+..+......+. ++.+++...
T Consensus 220 ~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~--~~W~~~~~~g---~~p~~R~~h~~~~~----~~~~~l~gG~~~~~~~ 290 (482)
T KOG0379|consen 220 MVVVGNKLLVFGGGDDGDVYLNDVHILDLST--WEWKLLPTGG---DLPSPRSGHSLTVS----GDHLLLFGGGTDPKQE 290 (482)
T ss_pred EEEECCeEEEEeccccCCceecceEeeeccc--ceeeeccccC---CCCCCcceeeeEEE----CCEEEEEcCCcccccc
Confidence 778889998887654 22 56889988632 5676433221 12222333444432 244443211
Q ss_pred -CcEEEEEECCCCcEEEEEEe
Q 040444 334 -GEKLVWYDWKRKKLKTVKID 353 (409)
Q Consensus 334 -~~~l~~yd~~~~~~~~v~~~ 353 (409)
-..++.+|.++..|.++...
T Consensus 291 ~l~~~~~l~~~~~~w~~~~~~ 311 (482)
T KOG0379|consen 291 PLGDLYGLDLETLVWSKVESV 311 (482)
T ss_pred cccccccccccccceeeeecc
Confidence 12478899999999887543
No 33
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.88 E-value=0.0019 Score=58.88 Aligned_cols=46 Identities=17% Similarity=0.293 Sum_probs=39.8
Q ss_pred CCCCcHHHHHHHHhcCC-----CCceeEEEecccchhhhcCChhHHHHHHh
Q 040444 1 MSKVPLDVVTGTLYQLP-----VKTLLRYRCLSRPLCSIIDDPDFIKLQLN 46 (409)
Q Consensus 1 m~~LP~Dll~eIL~rLP-----~ksL~R~r~VCK~W~~li~~~~F~~~~~~ 46 (409)
|+.||+|++.+||.++= ..+|.++.+|||.|+-...+|.|-+....
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~ 157 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL 157 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence 35799999999998764 58999999999999999999999776543
No 34
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=94.98 E-value=1.7 Score=41.64 Aligned_cols=162 Identities=19% Similarity=0.191 Sum_probs=85.3
Q ss_pred cEEEecccceEEEeeCCccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCC
Q 040444 89 TEVFGSCNGLLALSNSDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLG 168 (409)
Q Consensus 89 ~~~~~sc~GLl~l~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~ 168 (409)
..+.+-.+.-|+..+.....+|+++.|+....+|.+..... ....+.+ .+ ++..+............
T Consensus 69 ~~F~al~gskIv~~d~~~~t~vyDt~t~av~~~P~l~~pk~------~pisv~V-----G~--~LY~m~~~~~~~~~~~~ 135 (342)
T PF07893_consen 69 MDFFALHGSKIVAVDQSGRTLVYDTDTRAVATGPRLHSPKR------CPISVSV-----GD--KLYAMDRSPFPEPAGRP 135 (342)
T ss_pred eEEEEecCCeEEEEcCCCCeEEEECCCCeEeccCCCCCCCc------ceEEEEe-----CC--eEEEeeccCccccccCc
Confidence 34444434445555445678999999999999998654211 1111222 11 24444433221000000
Q ss_pred cceecEEEEEE--------cCCCceEEccccCcccccceeeeeeeee------cccceEEECCeEEEEeecCCCCCCccE
Q 040444 169 CFVEYEVKVFS--------LKNRSWTRVKKLPNYLRFMFQFYFHLLH------RRGYGVYVNGVVHWVSPRRPEFGIGNL 234 (409)
Q Consensus 169 ~~~~~~~~vys--------s~t~~Wr~~~~~p~~~~~~~~~~~~~~~------~~~~~v~~~G~lywl~~~~~~~~~~~~ 234 (409)
.....++.+|+ ..+.+|+.++.+| +.... ..+.+|+ +|.--|++..... ..
T Consensus 136 ~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~PP----------f~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~----~G 200 (342)
T PF07893_consen 136 DFPCFEALVYRPPPDDPSPEESWSWRSLPPPP----------FVRDRRYSDYRITSYAVV-DGRTIFVSVNGRR----WG 200 (342)
T ss_pred cceeEEEeccccccccccCCCcceEEcCCCCC----------ccccCCcccceEEEEEEe-cCCeEEEEecCCc----eE
Confidence 00023333333 2345788887755 22221 3456677 8988888665431 13
Q ss_pred EEEEECCCcceeee---cCCCCCCC--CCCceE--EEEEeC--CeEEEEEecC
Q 040444 235 IVAFDLGLEEFRLL---PQPNYGAR--EKDFVL--DVGALE--GHMCLMCNYD 278 (409)
Q Consensus 235 Il~fDl~~e~~~~i---~lP~~~~~--~~~~~~--~L~~~~--G~L~~~~~~~ 278 (409)
-.+||+.+.+|+.. .||-.+.. .....+ -|...+ |.||.+....
T Consensus 201 TysfDt~~~~W~~~GdW~LPF~G~a~y~~el~~W~Gls~~~~~~~lca~dv~~ 253 (342)
T PF07893_consen 201 TYSFDTESHEWRKHGDWMLPFHGQAEYVPELDLWFGLSSDGGGGHLCACDVSS 253 (342)
T ss_pred EEEEEcCCcceeeccceecCcCCccEECCCcCeEEEeccCCCCcEEEEEeccc
Confidence 89999999999885 67753331 122223 333334 4777766543
No 35
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=94.04 E-value=0.93 Score=43.37 Aligned_cols=156 Identities=15% Similarity=0.117 Sum_probs=89.2
Q ss_pred EEEEEEcCCCceEEccc--cCcccccceeeeeeeeecccceEEEC-CeEEEEeecCCCC------CCccEEEEEECCCcc
Q 040444 174 EVKVFSLKNRSWTRVKK--LPNYLRFMFQFYFHLLHRRGYGVYVN-GVVHWVSPRRPEF------GIGNLIVAFDLGLEE 244 (409)
Q Consensus 174 ~~~vyss~t~~Wr~~~~--~p~~~~~~~~~~~~~~~~~~~~v~~~-G~lywl~~~~~~~------~~~~~Il~fDl~~e~ 244 (409)
.+..|+.+++.|+.+.. .| ... ...++|.+- | +-|+...+..+ .+-.-+-.||+.+.+
T Consensus 99 dLy~Yn~k~~eWkk~~spn~P----------~pR--sshq~va~~s~-~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trk 165 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPNAP----------PPR--SSHQAVAVPSN-ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRK 165 (521)
T ss_pred eeeEEeccccceeEeccCCCc----------CCC--ccceeEEeccC-eEEEeccccCCcchhhhhhhhheeeeeeccch
Confidence 56789999999998753 22 111 234455554 5 55554433222 112248899999999
Q ss_pred eeeecCCCCCCCCCCceEEEEEeCCeEEEEEecCCC------eEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEE
Q 040444 245 FRLLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLV------KVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLI 318 (409)
Q Consensus 245 ~~~i~lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~------~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~ 318 (409)
|..+.++.......+ .+++....+|.+.....+. -=+||..+-+ ...|+++.. +- -.+..+.-.-+.
T Consensus 166 weql~~~g~PS~RSG--HRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLd--tykW~Klep-sg--a~PtpRSGcq~~ 238 (521)
T KOG1230|consen 166 WEQLEFGGGPSPRSG--HRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLD--TYKWSKLEP-SG--AGPTPRSGCQFS 238 (521)
T ss_pred heeeccCCCCCCCcc--ceeEEeeeeEEEEcceecCCCceEEeeeeEEEecc--ceeeeeccC-CC--CCCCCCCcceEE
Confidence 999988862221222 2678888888888765322 3467776632 356999764 21 111112222345
Q ss_pred EEeecCCCEEEEEEc--------------CcEEEEEECCC-----CcEEEEE
Q 040444 319 CSNEDGGDKVLLEVN--------------GEKLVWYDWKR-----KKLKTVK 351 (409)
Q Consensus 319 ~~~~~~~~~ill~~~--------------~~~l~~yd~~~-----~~~~~v~ 351 (409)
+.+ +|++++.... ...++..++++ -.|.++.
T Consensus 239 vtp--qg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvk 288 (521)
T KOG1230|consen 239 VTP--QGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVK 288 (521)
T ss_pred ecC--CCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeecc
Confidence 565 6665554321 12377778877 3455554
No 36
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=92.57 E-value=13 Score=37.82 Aligned_cols=43 Identities=23% Similarity=0.220 Sum_probs=38.9
Q ss_pred CCCcHHHHHHHHhcCCCCceeEEEecccchhhhcCChhHHHHH
Q 040444 2 SKVPLDVVTGTLYQLPVKTLLRYRCLSRPLCSIIDDPDFIKLQ 44 (409)
Q Consensus 2 ~~LP~Dll~eIL~rLP~ksL~R~r~VCK~W~~li~~~~F~~~~ 44 (409)
+.||.++...||..|+.+++++++.||+.|+.++.+.....+.
T Consensus 109 ~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~ 151 (537)
T KOG0274|consen 109 SLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRM 151 (537)
T ss_pred hcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhh
Confidence 5699999999999999999999999999999999987776643
No 37
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=92.44 E-value=8.3 Score=35.08 Aligned_cols=125 Identities=14% Similarity=0.077 Sum_probs=74.2
Q ss_pred ccceEEECCeEEEEeecCCCCCCccEEEEEECCCccee-eecCCCCCCCC-------CCceEEEEEeCCeEEEEEecCCC
Q 040444 209 RGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFR-LLPQPNYGARE-------KDFVLDVGALEGHMCLMCNYDLV 280 (409)
Q Consensus 209 ~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~-~i~lP~~~~~~-------~~~~~~L~~~~G~L~~~~~~~~~ 280 (409)
....|.-||++|+...... .|+.||+.++... ...+|..+... ..-.+.+.+-+..|.++......
T Consensus 71 GtG~vVYngslYY~~~~s~------~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~ 144 (250)
T PF02191_consen 71 GTGHVVYNGSLYYNKYNSR------NIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDN 144 (250)
T ss_pred cCCeEEECCcEEEEecCCc------eEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCC
Confidence 4455778999999876443 5999999999988 78898732211 11135788888888888765432
Q ss_pred --eEEEEEEeecC--CCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEc-----CcEEEEEECCCCcEEEEE
Q 040444 281 --KVDVWMMKEYG--LKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVN-----GEKLVWYDWKRKKLKTVK 351 (409)
Q Consensus 281 --~~~IW~l~~~~--~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~-----~~~l~~yd~~~~~~~~v~ 351 (409)
.+.|=.|+... ..+.|.-. +.... .. -+|.. + |+++.... ..--+.||+.+++-+.+.
T Consensus 145 ~g~ivvskld~~tL~v~~tw~T~--~~k~~----~~----naFmv--C-GvLY~~~s~~~~~~~I~yafDt~t~~~~~~~ 211 (250)
T PF02191_consen 145 NGNIVVSKLDPETLSVEQTWNTS--YPKRS----AG----NAFMV--C-GVLYATDSYDTRDTEIFYAFDTYTGKEEDVS 211 (250)
T ss_pred CCcEEEEeeCcccCceEEEEEec--cCchh----hc----ceeeE--e-eEEEEEEECCCCCcEEEEEEECCCCceecee
Confidence 47777776432 12345321 11110 11 12222 2 34444321 123678999998877765
Q ss_pred E
Q 040444 352 I 352 (409)
Q Consensus 352 ~ 352 (409)
+
T Consensus 212 i 212 (250)
T PF02191_consen 212 I 212 (250)
T ss_pred e
Confidence 4
No 38
>PF13964 Kelch_6: Kelch motif
Probab=92.20 E-value=0.49 Score=30.98 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=31.2
Q ss_pred cceEEECCeEEEEeecCCCCCCccEEEEEECCCcceeeec
Q 040444 210 GYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLP 249 (409)
Q Consensus 210 ~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~ 249 (409)
..+|.++|.||-+............+..||+++.+|+.++
T Consensus 5 ~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 5 HSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred CEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC
Confidence 4568899999999876552233457999999999999874
No 39
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=92.17 E-value=8.5 Score=34.62 Aligned_cols=205 Identities=14% Similarity=0.139 Sum_probs=105.7
Q ss_pred ecccceEEEee-CCccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcce
Q 040444 93 GSCNGLLALSN-SDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFV 171 (409)
Q Consensus 93 ~sc~GLl~l~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~ 171 (409)
...+|-|.+.+ ....++.++|.+++...++.+. ..|+.++...+. ++...
T Consensus 8 d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-------------~~G~~~~~~~g~--l~v~~-------------- 58 (246)
T PF08450_consen 8 DPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-------------PNGMAFDRPDGR--LYVAD-------------- 58 (246)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS-------------EEEEEEECTTSE--EEEEE--------------
T ss_pred ECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC-------------CceEEEEccCCE--EEEEE--------------
Confidence 34466666665 4668999999999887654322 356666632222 22211
Q ss_pred ecEEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCc--cEEEEEECCCcceee--
Q 040444 172 EYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIG--NLIVAFDLGLEEFRL-- 247 (409)
Q Consensus 172 ~~~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~--~~Il~fDl~~e~~~~-- 247 (409)
.....+++..++.++.+...+... ........-.+--+|.+|.-.......... ..|..+|.. .+...
T Consensus 59 ~~~~~~~d~~~g~~~~~~~~~~~~-------~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~ 130 (246)
T PF08450_consen 59 SGGIAVVDPDTGKVTVLADLPDGG-------VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA 130 (246)
T ss_dssp TTCEEEEETTTTEEEEEEEEETTC-------SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE
T ss_pred cCceEEEecCCCcEEEEeeccCCC-------cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe
Confidence 123356688999888776542110 001111222344568877655443322112 569999999 44333
Q ss_pred --ecCCCCCCCCCCceEEEE-EeCCe-EEEEEecCCCeEEEEEEeecCCCCceeEEEEe-ecccccCCcceeeeEEEEee
Q 040444 248 --LPQPNYGAREKDFVLDVG-ALEGH-MCLMCNYDLVKVDVWMMKEYGLKESWSKMFSI-DRCRSISSFRFLRPLICSNE 322 (409)
Q Consensus 248 --i~lP~~~~~~~~~~~~L~-~~~G~-L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I-~~~~~~~~~~~~~p~~~~~~ 322 (409)
+..|. -+. .-+|+ |+++..... . ||.++-......+.....+ .+.... ....-+++..
T Consensus 131 ~~~~~pN----------Gi~~s~dg~~lyv~ds~~~-~--i~~~~~~~~~~~~~~~~~~~~~~~~~---g~pDG~~vD~- 193 (246)
T PF08450_consen 131 DGLGFPN----------GIAFSPDGKTLYVADSFNG-R--IWRFDLDADGGELSNRRVFIDFPGGP---GYPDGLAVDS- 193 (246)
T ss_dssp EEESSEE----------EEEEETTSSEEEEEETTTT-E--EEEEEEETTTCCEEEEEEEEE-SSSS---CEEEEEEEBT-
T ss_pred cCccccc----------ceEECCcchheeecccccc-e--eEEEeccccccceeeeeeEEEcCCCC---cCCCcceEcC-
Confidence 23332 122 23454 555444332 3 6776643222345544433 332211 1223345544
Q ss_pred cCCCEEEEE-EcCcEEEEEECCCCcEEEEEEe
Q 040444 323 DGGDKVLLE-VNGEKLVWYDWKRKKLKTVKID 353 (409)
Q Consensus 323 ~~~~~ill~-~~~~~l~~yd~~~~~~~~v~~~ 353 (409)
+|. |++. ....++..||++.+.+..+.++
T Consensus 194 -~G~-l~va~~~~~~I~~~~p~G~~~~~i~~p 223 (246)
T PF08450_consen 194 -DGN-LWVADWGGGRIVVFDPDGKLLREIELP 223 (246)
T ss_dssp -TS--EEEEEETTTEEEEEETTSCEEEEEE-S
T ss_pred -CCC-EEEEEcCCCEEEEECCCccEEEEEcCC
Confidence 655 5554 4467899999997778888776
No 40
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=91.87 E-value=1.5 Score=35.47 Aligned_cols=73 Identities=22% Similarity=0.325 Sum_probs=52.7
Q ss_pred EEEEECCCc--ceeeecCCCCCC--C-CC-------CceEEEEEeCCeEEEEEecCC---------CeEEEEEEeec-CC
Q 040444 235 IVAFDLGLE--EFRLLPQPNYGA--R-EK-------DFVLDVGALEGHMCLMCNYDL---------VKVDVWMMKEY-GL 292 (409)
Q Consensus 235 Il~fDl~~e--~~~~i~lP~~~~--~-~~-------~~~~~L~~~~G~L~~~~~~~~---------~~~~IW~l~~~-~~ 292 (409)
|+..|+-.+ .++.|+||. +. . .. .....+++.+|+|.++..... ..+.+|.|... +.
T Consensus 8 IL~CD~~~~~p~l~~vpLP~-~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~ 86 (131)
T PF07762_consen 8 ILFCDVFDDSPVLRFVPLPP-PCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGS 86 (131)
T ss_pred EEEEECCCCCccEEEEeCCC-ccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCC
Confidence 889998866 677899997 33 1 11 122378889999988876522 27999999974 23
Q ss_pred CCceeEEEEeeccccc
Q 040444 293 KESWSKMFSIDRCRSI 308 (409)
Q Consensus 293 ~~~W~~~~~I~~~~~~ 308 (409)
...|.+.+++....+.
T Consensus 87 ~~~W~~d~~v~~~diw 102 (131)
T PF07762_consen 87 SWEWKKDCEVDLSDIW 102 (131)
T ss_pred CCCEEEeEEEEhhhcc
Confidence 4789999999987654
No 41
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=89.96 E-value=1.2 Score=29.05 Aligned_cols=42 Identities=14% Similarity=0.076 Sum_probs=31.2
Q ss_pred cceEEECCeEEEEeec--CCCCCCccEEEEEECCCcceeeecCC
Q 040444 210 GYGVYVNGVVHWVSPR--RPEFGIGNLIVAFDLGLEEFRLLPQP 251 (409)
Q Consensus 210 ~~~v~~~G~lywl~~~--~~~~~~~~~Il~fDl~~e~~~~i~lP 251 (409)
..++.++|.||.+... .........+..||+++.+|+.++.+
T Consensus 5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred eEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 4457889999998876 22223456799999999999987543
No 42
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=88.93 E-value=1.2 Score=28.46 Aligned_cols=39 Identities=13% Similarity=0.051 Sum_probs=31.1
Q ss_pred cceEEECCeEEEEeecCCCCCCccEEEEEECCCcceeee
Q 040444 210 GYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLL 248 (409)
Q Consensus 210 ~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i 248 (409)
..++.++|.+|-+............+..||+.+.+|..+
T Consensus 5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 43 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEEL 43 (47)
T ss_dssp EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEE
T ss_pred CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEc
Confidence 346789999999987665334456799999999999976
No 43
>PF13964 Kelch_6: Kelch motif
Probab=88.66 E-value=0.67 Score=30.31 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.3
Q ss_pred CccEEEEcccccceeccCCCCC
Q 040444 105 DQDIALFNPATRQLFKLPVEYI 126 (409)
Q Consensus 105 ~~~~~V~NP~T~~~~~LP~~~~ 126 (409)
.+.+.++||.|++|..||+++.
T Consensus 27 ~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 27 SNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred cccEEEEcCCCCcEEECCCCCC
Confidence 3579999999999999998774
No 44
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=87.38 E-value=14 Score=35.96 Aligned_cols=100 Identities=13% Similarity=0.237 Sum_probs=61.4
Q ss_pred cEEEEEECCCcceeeecCCCCCCCCCCce-EEEEEeCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCc
Q 040444 233 NLIVAFDLGLEEFRLLPQPNYGAREKDFV-LDVGALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSF 311 (409)
Q Consensus 233 ~~Il~fDl~~e~~~~i~lP~~~~~~~~~~-~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~ 311 (409)
.++.+||+.+.++..+..|. +.....+. +.+.-.+..|.+ ... ...|.+-.++. ..|..-+.|.-
T Consensus 280 ky~ysyDle~ak~~k~~~~~-g~e~~~~e~FeVShd~~fia~-~G~-~G~I~lLhakT----~eli~s~KieG------- 345 (514)
T KOG2055|consen 280 KYLYSYDLETAKVTKLKPPY-GVEEKSMERFEVSHDSNFIAI-AGN-NGHIHLLHAKT----KELITSFKIEG------- 345 (514)
T ss_pred eEEEEeeccccccccccCCC-CcccchhheeEecCCCCeEEE-ccc-CceEEeehhhh----hhhhheeeecc-------
Confidence 46999999999999999887 65322232 122222232222 222 22555555543 34655555542
Q ss_pred ceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcEEE
Q 040444 312 RFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKLKT 349 (409)
Q Consensus 312 ~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~~~ 349 (409)
...-+.+.. +|..|++....+.++.+|++.+.+..
T Consensus 346 -~v~~~~fsS--dsk~l~~~~~~GeV~v~nl~~~~~~~ 380 (514)
T KOG2055|consen 346 -VVSDFTFSS--DSKELLASGGTGEVYVWNLRQNSCLH 380 (514)
T ss_pred -EEeeEEEec--CCcEEEEEcCCceEEEEecCCcceEE
Confidence 244566666 88888877667789999999997644
No 45
>smart00612 Kelch Kelch domain.
Probab=87.11 E-value=1.2 Score=28.10 Aligned_cols=21 Identities=24% Similarity=0.575 Sum_probs=18.4
Q ss_pred ecEEEEEEcCCCceEEccccC
Q 040444 172 EYEVKVFSLKNRSWTRVKKLP 192 (409)
Q Consensus 172 ~~~~~vyss~t~~Wr~~~~~p 192 (409)
...+++|+.+++.|..++.+|
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~ 34 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMP 34 (47)
T ss_pred eeeEEEECCCCCeEccCCCCC
Confidence 457899999999999998877
No 46
>smart00284 OLF Olfactomedin-like domains.
Probab=86.83 E-value=24 Score=32.09 Aligned_cols=125 Identities=14% Similarity=0.092 Sum_probs=72.9
Q ss_pred ccceEEECCeEEEEeecCCCCCCccEEEEEECCCcceee-ecCCCCCCCC-------CCceEEEEEeCCeEEEEEecCC-
Q 040444 209 RGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRL-LPQPNYGARE-------KDFVLDVGALEGHMCLMCNYDL- 279 (409)
Q Consensus 209 ~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~-i~lP~~~~~~-------~~~~~~L~~~~G~L~~~~~~~~- 279 (409)
....|.-||++|+...... .|+.||+.+++... -.+|..+... ..-.+.|.+-+..|.++.....
T Consensus 76 GtG~VVYngslYY~~~~s~------~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~ 149 (255)
T smart00284 76 GTGVVVYNGSLYFNKFNSH------DICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQN 149 (255)
T ss_pred cccEEEECceEEEEecCCc------cEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCC
Confidence 4556889999999665433 49999999999864 4567522111 1123688898999988876533
Q ss_pred -CeEEEEEEeecC--CCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEE-----cCcEEEEEECCCCcEEEEE
Q 040444 280 -VKVDVWMMKEYG--LKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEV-----NGEKLVWYDWKRKKLKTVK 351 (409)
Q Consensus 280 -~~~~IW~l~~~~--~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~-----~~~~l~~yd~~~~~~~~v~ 351 (409)
..|.|=.|+... ..+.|.-. ++.. ... -+|.. + |+++... ...--+.||..+++-+.+.
T Consensus 150 ~g~ivvSkLnp~tL~ve~tW~T~--~~k~----sa~----naFmv--C-GvLY~~~s~~~~~~~I~yayDt~t~~~~~~~ 216 (255)
T smart00284 150 AGKIVISKLNPATLTIENTWITT--YNKR----SAS----NAFMI--C-GILYVTRSLGSKGEKVFYAYDTNTGKEGHLD 216 (255)
T ss_pred CCCEEEEeeCcccceEEEEEEcC--CCcc----ccc----ccEEE--e-eEEEEEccCCCCCcEEEEEEECCCCccceee
Confidence 368888887532 12345331 1111 111 12222 2 3444432 1233778999988866654
Q ss_pred E
Q 040444 352 I 352 (409)
Q Consensus 352 ~ 352 (409)
+
T Consensus 217 i 217 (255)
T smart00284 217 I 217 (255)
T ss_pred e
Confidence 4
No 47
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=84.44 E-value=2.7 Score=26.78 Aligned_cols=23 Identities=17% Similarity=0.502 Sum_probs=19.6
Q ss_pred ceecEEEEEEcCCCceEEccccC
Q 040444 170 FVEYEVKVFSLKNRSWTRVKKLP 192 (409)
Q Consensus 170 ~~~~~~~vyss~t~~Wr~~~~~p 192 (409)
.....+++|+..+++|+.++.+|
T Consensus 25 ~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 25 QPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp SBEEEEEEEETTTTEEEEEEEES
T ss_pred ceeeeEEEEeCCCCEEEEcCCCC
Confidence 35678999999999999997765
No 48
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=83.85 E-value=26 Score=31.66 Aligned_cols=169 Identities=12% Similarity=0.159 Sum_probs=86.7
Q ss_pred ecEEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCC----cceee
Q 040444 172 EYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGL----EEFRL 247 (409)
Q Consensus 172 ~~~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~----e~~~~ 247 (409)
.....+|+..++++|.+.... ..++ ...++.-||.+.-...... ....|-.|+..+ ..|.
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~t----------d~FC--Sgg~~L~dG~ll~tGG~~~---G~~~ir~~~p~~~~~~~~w~- 108 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQT----------DTFC--SGGAFLPDGRLLQTGGDND---GNKAIRIFTPCTSDGTCDWT- 108 (243)
T ss_pred eEEEEEEecCCCcEEeccCCC----------CCcc--cCcCCCCCCCEEEeCCCCc---cccceEEEecCCCCCCCCce-
Confidence 345668999999999886432 2222 2334566777654433322 123477788654 3343
Q ss_pred ecCCCCCCCCCCceEEEEEe-CCeEEEEEecCCCeEEEEEEeecCC-CCceeEEEEeecccccCCcceeeeEEEE-eecC
Q 040444 248 LPQPNYGAREKDFVLDVGAL-EGHMCLMCNYDLVKVDVWMMKEYGL-KESWSKMFSIDRCRSISSFRFLRPLICS-NEDG 324 (409)
Q Consensus 248 i~lP~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~~IW~l~~~~~-~~~W~~~~~I~~~~~~~~~~~~~p~~~~-~~~~ 324 (409)
..|. ......++.....+ +|++.++........+.|=-+.... ...|....... . ......+|+.+. + +
T Consensus 109 -e~~~-~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~--~--~~~~nlYP~~~llP--d 180 (243)
T PF07250_consen 109 -ESPN-DMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTS--D--TLPNNLYPFVHLLP--D 180 (243)
T ss_pred -ECcc-cccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhh--c--cCccccCceEEEcC--C
Confidence 4443 22123344444444 7888888877654666664322110 11121111111 0 011235565444 4 5
Q ss_pred CCEEEEEEcCcEEEEEECCCCcE-EEE-EEeCCCCceeEeEEEeccc
Q 040444 325 GDKVLLEVNGEKLVWYDWKRKKL-KTV-KIDGGPDSFVACICVESLI 369 (409)
Q Consensus 325 ~~~ill~~~~~~l~~yd~~~~~~-~~v-~~~~~~~~~~~~~y~eSlv 369 (409)
+.||+..+. .-..||.+++++ +.+ .++|. .+.++...|-+
T Consensus 181 -G~lFi~an~-~s~i~d~~~n~v~~~lP~lPg~---~R~YP~sgssv 222 (243)
T PF07250_consen 181 -GNLFIFANR-GSIIYDYKTNTVVRTLPDLPGG---PRNYPASGSSV 222 (243)
T ss_pred -CCEEEEEcC-CcEEEeCCCCeEEeeCCCCCCC---ceecCCCcceE
Confidence 456665544 377789999976 444 23443 34556666544
No 49
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=82.51 E-value=0.27 Score=47.18 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=34.5
Q ss_pred CCcHHHHHHHHhcCCCCceeEEEecccchhhhcCChh
Q 040444 3 KVPLDVVTGTLYQLPVKTLLRYRCLSRPLCSIIDDPD 39 (409)
Q Consensus 3 ~LP~Dll~eIL~rLP~ksL~R~r~VCK~W~~li~~~~ 39 (409)
.||.+++..|++-|..++++|++.+|+.|+.+..|..
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 6999999999999999999999999999999987644
No 50
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=81.57 E-value=24 Score=32.35 Aligned_cols=121 Identities=19% Similarity=0.263 Sum_probs=71.3
Q ss_pred EEecccceEEEee-CCccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCc
Q 040444 91 VFGSCNGLLALSN-SDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGC 169 (409)
Q Consensus 91 ~~~sc~GLl~l~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~ 169 (409)
+++.-+|=|-+.. ..+.+...||.++.-..+|.+...... .-...-|+.. -+++...
T Consensus 194 i~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~g--------sRriwsdpig----~~wittw---------- 251 (353)
T COG4257 194 ICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAG--------SRRIWSDPIG----RAWITTW---------- 251 (353)
T ss_pred eEECCCCcEEEEeccccceEEcccccCCcceecCCCccccc--------ccccccCccC----cEEEecc----------
Confidence 3444456555543 245677789999988888876642111 1112223321 2233321
Q ss_pred ceecEEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEECC-eEEEEeecCCCCCCccEEEEEECCCcceeee
Q 040444 170 FVEYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNG-VVHWVSPRRPEFGIGNLIVAFDLGLEEFRLL 248 (409)
Q Consensus 170 ~~~~~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G-~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i 248 (409)
..-.+.-|+..+.+|++.. +|.. .....+++++. -.-|+..-+. ..|+.||.++++|+++
T Consensus 252 -g~g~l~rfdPs~~sW~eyp-LPgs------------~arpys~rVD~~grVW~sea~a-----gai~rfdpeta~ftv~ 312 (353)
T COG4257 252 -GTGSLHRFDPSVTSWIEYP-LPGS------------KARPYSMRVDRHGRVWLSEADA-----GAIGRFDPETARFTVL 312 (353)
T ss_pred -CCceeeEeCcccccceeee-CCCC------------CCCcceeeeccCCcEEeecccc-----CceeecCcccceEEEe
Confidence 2346778899999999874 2310 02344566653 3446654332 3599999999999999
Q ss_pred cCCC
Q 040444 249 PQPN 252 (409)
Q Consensus 249 ~lP~ 252 (409)
++|.
T Consensus 313 p~pr 316 (353)
T COG4257 313 PIPR 316 (353)
T ss_pred cCCC
Confidence 9987
No 51
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=78.67 E-value=46 Score=29.29 Aligned_cols=192 Identities=16% Similarity=0.154 Sum_probs=92.7
Q ss_pred ccceEEEeeCCccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecE
Q 040444 95 CNGLLALSNSDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYE 174 (409)
Q Consensus 95 c~GLl~l~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~ 174 (409)
.+|.+........++.+|+.|++...--..+.... ... .. + +=+|+... . .-.
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~------~~~---~~-~----~~~v~v~~---~----------~~~ 87 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS------GAP---VV-D----GGRVYVGT---S----------DGS 87 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGG------SGE---EE-E----TTEEEEEE---T----------TSE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccc------cee---ee-c----cccccccc---c----------eee
Confidence 57888777677889999999997664322221100 110 00 0 11222221 0 114
Q ss_pred EEEEEcCCC--ceEE-ccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcc--eee-e
Q 040444 175 VKVFSLKNR--SWTR-VKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEE--FRL-L 248 (409)
Q Consensus 175 ~~vyss~t~--~Wr~-~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~--~~~-i 248 (409)
+..++..++ .|+. ....+. .. ..........++.+|...... .|.++|+.+.+ |.. +
T Consensus 88 l~~~d~~tG~~~W~~~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~~~g-------~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 88 LYALDAKTGKVLWSIYLTSSPP---------AG-VRSSSSPAVDGDRLYVGTSSG-------KLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp EEEEETTTSCEEEEEEE-SSCT---------CS-TB--SEEEEETTEEEEEETCS-------EEEEEETTTTEEEEEEES
T ss_pred eEecccCCcceeeeeccccccc---------cc-cccccCceEecCEEEEEeccC-------cEEEEecCCCcEEEEeec
Confidence 556665554 6883 433221 11 001122233355666554332 49999988654 433 3
Q ss_pred cCCCCCCCC----CCceEEEEEeCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecC
Q 040444 249 PQPNYGARE----KDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDG 324 (409)
Q Consensus 249 ~lP~~~~~~----~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~ 324 (409)
..|. .... ......+...+|.+++...... .+.+ -++. + +..|.+. +.- ..+. ... .
T Consensus 151 ~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~-~~~~-d~~t-g-~~~w~~~--~~~---------~~~~-~~~--~ 211 (238)
T PF13360_consen 151 GEPR-GSSPISSFSDINGSPVISDGRVYVSSGDGR-VVAV-DLAT-G-EKLWSKP--ISG---------IYSL-PSV--D 211 (238)
T ss_dssp STT--SS--EEEETTEEEEEECCTTEEEEECCTSS-EEEE-ETTT-T-EEEEEEC--SS----------ECEC-EEC--C
T ss_pred CCCC-CCcceeeecccccceEEECCEEEEEcCCCe-EEEE-ECCC-C-CEEEEec--CCC---------ccCC-cee--e
Confidence 3333 1100 0112244445676655544432 2333 2221 1 2236221 111 1111 223 6
Q ss_pred CCEEEEEEcCcEEEEEECCCCcEEE
Q 040444 325 GDKVLLEVNGEKLVWYDWKRKKLKT 349 (409)
Q Consensus 325 ~~~ill~~~~~~l~~yd~~~~~~~~ 349 (409)
++.+++...++.++.+|++|++...
T Consensus 212 ~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 212 GGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp CTEEEEEETTTEEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEe
Confidence 6888888767889999999999765
No 52
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=78.23 E-value=50 Score=31.39 Aligned_cols=119 Identities=16% Similarity=0.196 Sum_probs=66.2
Q ss_pred ceEEEC--CeEEEEeecCCCCCCccEEEEEECCCcceeee---cCCCCCC-CCCCceE---EEEEe---CCeEEEEEecC
Q 040444 211 YGVYVN--GVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLL---PQPNYGA-REKDFVL---DVGAL---EGHMCLMCNYD 278 (409)
Q Consensus 211 ~~v~~~--G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i---~lP~~~~-~~~~~~~---~L~~~---~G~L~~~~~~~ 278 (409)
.+++.+ |.+||++.++. |...|++.+.-... ++-. .. ...++.. ++..+ .|+|+++...+
T Consensus 188 ~~~~~~~~~~~~F~Sy~G~-------v~~~dlsg~~~~~~~~~~~~t-~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g 259 (342)
T PF06433_consen 188 HPAYSRDGGRLYFVSYEGN-------VYSADLSGDSAKFGKPWSLLT-DAEKADGWRPGGWQLIAYHAASGRLYVLMHQG 259 (342)
T ss_dssp --EEETTTTEEEEEBTTSE-------EEEEEETTSSEEEEEEEESS--HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE-
T ss_pred ccceECCCCeEEEEecCCE-------EEEEeccCCcccccCcccccC-ccccccCcCCcceeeeeeccccCeEEEEecCC
Confidence 344443 57888877653 99999998764332 1111 00 0122221 33333 67888775432
Q ss_pred ------CCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEE-c-CcEEEEEECCCCcEEE
Q 040444 279 ------LVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEV-N-GEKLVWYDWKRKKLKT 349 (409)
Q Consensus 279 ------~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~-~-~~~l~~yd~~~~~~~~ 349 (409)
...-+||+++-.. =.++.+|++... ..-+++.. +..-+|+.. . +..|+.||..|++...
T Consensus 260 ~~gsHKdpgteVWv~D~~t----~krv~Ri~l~~~------~~Si~Vsq--d~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 260 GEGSHKDPGTEVWVYDLKT----HKRVARIPLEHP------IDSIAVSQ--DDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp -TT-TTS-EEEEEEEETTT----TEEEEEEEEEEE------ESEEEEES--SSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred CCCCccCCceEEEEEECCC----CeEEEEEeCCCc------cceEEEcc--CCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 2378999998532 257777876421 22466666 556566543 2 4579999999998643
No 53
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=78.12 E-value=4.8 Score=25.92 Aligned_cols=22 Identities=23% Similarity=0.682 Sum_probs=14.4
Q ss_pred eecEEEEEEcCCCceEEccccC
Q 040444 171 VEYEVKVFSLKNRSWTRVKKLP 192 (409)
Q Consensus 171 ~~~~~~vyss~t~~Wr~~~~~p 192 (409)
....+++|+..+++|+.++.+|
T Consensus 27 ~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 27 PLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp E---EEEEETTTTEEEE--SS-
T ss_pred ccCCEEEEECCCCEEEECCCCC
Confidence 4557889999999999997776
No 54
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=76.76 E-value=4.4 Score=26.10 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=20.0
Q ss_pred eEEE-CCeEEEEeecCCCCCCccEEEEEECCCcceeeec
Q 040444 212 GVYV-NGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLP 249 (409)
Q Consensus 212 ~v~~-~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~ 249 (409)
++.+ ++.+|-.............+..||+.+.+|+.++
T Consensus 7 ~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~ 45 (49)
T PF13418_consen 7 AVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP 45 (49)
T ss_dssp EEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--
T ss_pred EEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC
Confidence 3444 4666666543322112335899999999999883
No 55
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=75.56 E-value=65 Score=29.47 Aligned_cols=143 Identities=10% Similarity=0.106 Sum_probs=79.9
Q ss_pred eecEEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCC-cceeeec
Q 040444 171 VEYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGL-EEFRLLP 249 (409)
Q Consensus 171 ~~~~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~-e~~~~i~ 249 (409)
..+.+..|+..+++=.....+|. .. .......+++.+|-|+..+. ..+.||..+ +.-..++
T Consensus 66 G~S~l~~~d~~tg~~~~~~~l~~----------~~--FgEGit~~~d~l~qLTWk~~------~~f~yd~~tl~~~~~~~ 127 (264)
T PF05096_consen 66 GQSSLRKVDLETGKVLQSVPLPP----------RY--FGEGITILGDKLYQLTWKEG------TGFVYDPNTLKKIGTFP 127 (264)
T ss_dssp TEEEEEEEETTTSSEEEEEE-TT----------T----EEEEEEETTEEEEEESSSS------EEEEEETTTTEEEEEEE
T ss_pred CcEEEEEEECCCCcEEEEEECCc----------cc--cceeEEEECCEEEEEEecCC------eEEEEccccceEEEEEe
Confidence 46788899999987554445552 11 12223578999999998875 589999975 2334445
Q ss_pred CCCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEE
Q 040444 250 QPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVL 329 (409)
Q Consensus 250 lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~il 329 (409)
.|. +++ -|+..+..|.+... +-.|+.++- +......+|............--+-+. + +.|+
T Consensus 128 y~~-----EGW--GLt~dg~~Li~SDG----S~~L~~~dP----~~f~~~~~i~V~~~g~pv~~LNELE~i---~-G~Iy 188 (264)
T PF05096_consen 128 YPG-----EGW--GLTSDGKRLIMSDG----SSRLYFLDP----ETFKEVRTIQVTDNGRPVSNLNELEYI---N-GKIY 188 (264)
T ss_dssp -SS-----S----EEEECSSCEEEE-S----SSEEEEE-T----TT-SEEEEEE-EETTEE---EEEEEEE---T-TEEE
T ss_pred cCC-----cce--EEEcCCCEEEEECC----ccceEEECC----cccceEEEEEEEECCEECCCcEeEEEE---c-CEEE
Confidence 553 334 35555566555443 223455552 335566667665322222223334443 3 6788
Q ss_pred EEEcC-cEEEEEECCCCcEEEE
Q 040444 330 LEVNG-EKLVWYDWKRKKLKTV 350 (409)
Q Consensus 330 l~~~~-~~l~~yd~~~~~~~~v 350 (409)
.+... ..++..|++|+++..+
T Consensus 189 ANVW~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 189 ANVWQTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp EEETTSSEEEEEETTT-BEEEE
T ss_pred EEeCCCCeEEEEeCCCCeEEEE
Confidence 88653 5699999999998653
No 56
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=71.83 E-value=6.2 Score=25.52 Aligned_cols=23 Identities=22% Similarity=0.422 Sum_probs=18.7
Q ss_pred ceecEEEEEEcCCCceEEccccC
Q 040444 170 FVEYEVKVFSLKNRSWTRVKKLP 192 (409)
Q Consensus 170 ~~~~~~~vyss~t~~Wr~~~~~p 192 (409)
.....+++|+.++.+|+.+..+|
T Consensus 27 ~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 27 SSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred cccceeEEEECCCCEEeecCCCC
Confidence 34568999999999999987653
No 57
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=71.83 E-value=95 Score=29.68 Aligned_cols=110 Identities=14% Similarity=0.168 Sum_probs=60.4
Q ss_pred EEEEECCCcceeeecCCCCCCCCCCceEEEEEeCCeEEEEEecCCC---------eEEEEEEee----cCCCCceeEEEE
Q 040444 235 IVAFDLGLEEFRLLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLV---------KVDVWMMKE----YGLKESWSKMFS 301 (409)
Q Consensus 235 Il~fDl~~e~~~~i~lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~---------~~~IW~l~~----~~~~~~W~~~~~ 301 (409)
++.||.++.... .+|. -.......+ .+..+|+|+++...... .+++-+... ......|.=..
T Consensus 88 t~vyDt~t~av~--~~P~-l~~pk~~pi-sv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~- 162 (342)
T PF07893_consen 88 TLVYDTDTRAVA--TGPR-LHSPKRCPI-SVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRS- 162 (342)
T ss_pred eEEEECCCCeEe--ccCC-CCCCCcceE-EEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEc-
Confidence 889999888777 4444 111222233 34448889988765321 445443331 11234453222
Q ss_pred eecccccCCcce--eeeEEEEeecCCCEEEEEEcCc--EEEEEECCCCcEEEE
Q 040444 302 IDRCRSISSFRF--LRPLICSNEDGGDKVLLEVNGE--KLVWYDWKRKKLKTV 350 (409)
Q Consensus 302 I~~~~~~~~~~~--~~p~~~~~~~~~~~ill~~~~~--~l~~yd~~~~~~~~v 350 (409)
++.+.+...... ....++.-. +|..|++...+. .-+.||..+.+|+++
T Consensus 163 LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~~GTysfDt~~~~W~~~ 214 (342)
T PF07893_consen 163 LPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRRWGTYSFDTESHEWRKH 214 (342)
T ss_pred CCCCCccccCCcccceEEEEEEe-cCCeEEEEecCCceEEEEEEcCCcceeec
Confidence 444333221111 002233222 478899977654 699999999999987
No 58
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=70.58 E-value=74 Score=27.91 Aligned_cols=112 Identities=20% Similarity=0.144 Sum_probs=63.0
Q ss_pred eEEECCeEEEEeecCCCCCCccEEEEEECCCcceee-ecCCCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEEEe-e
Q 040444 212 GVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRL-LPQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMK-E 289 (409)
Q Consensus 212 ~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~-i~lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~-~ 289 (409)
++..+|.+|-.... ..|.++|..+.+-.. ..+|. .. .. .....+|.+++..... .|+.++ .
T Consensus 32 ~~~~~~~v~~~~~~-------~~l~~~d~~tG~~~W~~~~~~-~~-~~----~~~~~~~~v~v~~~~~----~l~~~d~~ 94 (238)
T PF13360_consen 32 AVPDGGRVYVASGD-------GNLYALDAKTGKVLWRFDLPG-PI-SG----APVVDGGRVYVGTSDG----SLYALDAK 94 (238)
T ss_dssp EEEETTEEEEEETT-------SEEEEEETTTSEEEEEEECSS-CG-GS----GEEEETTEEEEEETTS----EEEEEETT
T ss_pred EEEeCCEEEEEcCC-------CEEEEEECCCCCEEEEeeccc-cc-cc----eeeeccccccccccee----eeEecccC
Confidence 34577888776332 259999986554322 34444 22 11 1366788887766322 667776 3
Q ss_pred cCCCCceeE-EEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcEEE
Q 040444 290 YGLKESWSK-MFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKLKT 349 (409)
Q Consensus 290 ~~~~~~W~~-~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~~~ 349 (409)
.| +..|.. ...-+... ...+..... .++.+++....+.|+.+|+++++...
T Consensus 95 tG-~~~W~~~~~~~~~~~------~~~~~~~~~--~~~~~~~~~~~g~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 95 TG-KVLWSIYLTSSPPAG------VRSSSSPAV--DGDRLYVGTSSGKLVALDPKTGKLLW 146 (238)
T ss_dssp TS-CEEEEEEE-SSCTCS------TB--SEEEE--ETTEEEEEETCSEEEEEETTTTEEEE
T ss_pred Cc-ceeeeeccccccccc------cccccCceE--ecCEEEEEeccCcEEEEecCCCcEEE
Confidence 34 567873 32211111 111222222 35778887767789999999998754
No 59
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=69.80 E-value=81 Score=30.63 Aligned_cols=115 Identities=13% Similarity=0.090 Sum_probs=63.6
Q ss_pred cceEEECCeEEEEeecCCCCCCccEEEEEECCCc--ceeeecCCCC-CC-C-C--CCceEEEEEeCCeEEEEEecCCCeE
Q 040444 210 GYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLE--EFRLLPQPNY-GA-R-E--KDFVLDVGALEGHMCLMCNYDLVKV 282 (409)
Q Consensus 210 ~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e--~~~~i~lP~~-~~-~-~--~~~~~~L~~~~G~L~~~~~~~~~~~ 282 (409)
..++..+|.+|...... .+.+||..+. .|+. +++.. .. . . ..........+|++++.....
T Consensus 63 ~sPvv~~~~vy~~~~~g-------~l~ald~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g---- 130 (394)
T PRK11138 63 LHPAVAYNKVYAADRAG-------LVKALDADTGKEIWSV-DLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKG---- 130 (394)
T ss_pred eccEEECCEEEEECCCC-------eEEEEECCCCcEeeEE-cCCCcccccccccccccccccEEECCEEEEEcCCC----
Confidence 35678899999876543 4999998754 4543 22220 00 0 0 001112455677777644221
Q ss_pred EEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcEEE
Q 040444 283 DVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKLKT 349 (409)
Q Consensus 283 ~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~~~ 349 (409)
.+..++....+..|+... +- .....|+.. ++.|++...++.++.+|.++++...
T Consensus 131 ~l~ald~~tG~~~W~~~~--~~------~~~ssP~v~-----~~~v~v~~~~g~l~ald~~tG~~~W 184 (394)
T PRK11138 131 QVYALNAEDGEVAWQTKV--AG------EALSRPVVS-----DGLVLVHTSNGMLQALNESDGAVKW 184 (394)
T ss_pred EEEEEECCCCCCcccccC--CC------ceecCCEEE-----CCEEEEECCCCEEEEEEccCCCEee
Confidence 345555322356786642 11 011234332 3677777666779999999998654
No 60
>PLN02772 guanylate kinase
Probab=68.42 E-value=46 Score=32.44 Aligned_cols=76 Identities=8% Similarity=0.058 Sum_probs=51.2
Q ss_pred cceEEECCeEEEEeecCCCCCCccEEEEEECCCcceeeec----CCCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEE
Q 040444 210 GYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLP----QPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVW 285 (409)
Q Consensus 210 ~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~----lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW 285 (409)
..+|.+++.+|.+............+..||..+.+|..-. .|. +. +++. ....-+++|.++.......=+||
T Consensus 28 ~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~-~r--~GhS-a~v~~~~rilv~~~~~~~~~~~w 103 (398)
T PLN02772 28 ETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPK-PC--KGYS-AVVLNKDRILVIKKGSAPDDSIW 103 (398)
T ss_pred ceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCC-CC--Ccce-EEEECCceEEEEeCCCCCccceE
Confidence 5678899999988864433213457999999999998732 222 22 2332 23445788888876655578899
Q ss_pred EEee
Q 040444 286 MMKE 289 (409)
Q Consensus 286 ~l~~ 289 (409)
.|+-
T Consensus 104 ~l~~ 107 (398)
T PLN02772 104 FLEV 107 (398)
T ss_pred EEEc
Confidence 9974
No 61
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=68.13 E-value=68 Score=29.81 Aligned_cols=65 Identities=17% Similarity=0.172 Sum_probs=42.0
Q ss_pred CCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcEEEEEEeC
Q 040444 279 LVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKLKTVKIDG 354 (409)
Q Consensus 279 ~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~~~v~~~~ 354 (409)
+..+++|.+++.|.-.. .-...++- ...-++..+ +|.+++...-++.+-.||+.+++...|..+.
T Consensus 49 D~tVR~wevq~~g~~~~-ka~~~~~~--------PvL~v~Wsd--dgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd 113 (347)
T KOG0647|consen 49 DGTVRIWEVQNSGQLVP-KAQQSHDG--------PVLDVCWSD--DGSKVFSGGCDKQAKLWDLASGQVSQVAAHD 113 (347)
T ss_pred CCceEEEEEecCCcccc-hhhhccCC--------CeEEEEEcc--CCceEEeeccCCceEEEEccCCCeeeeeecc
Confidence 34999999998653221 11111111 122234444 8889998877778999999999998886643
No 62
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=66.83 E-value=1e+02 Score=28.18 Aligned_cols=117 Identities=13% Similarity=0.091 Sum_probs=67.7
Q ss_pred cceEE--ECCeEEEEeecCCCCCCccEEEEEECCCccee-eecCCCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEE
Q 040444 210 GYGVY--VNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFR-LLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWM 286 (409)
Q Consensus 210 ~~~v~--~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~-~i~lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~ 286 (409)
.++.. -+|.+|==+... ....|..+|+.+++.. ..++|+ .. |.--+...+++|+.+..... ..-++-
T Consensus 47 TQGL~~~~~g~LyESTG~y----G~S~l~~~d~~tg~~~~~~~l~~-~~----FgEGit~~~d~l~qLTWk~~-~~f~yd 116 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLY----GQSSLRKVDLETGKVLQSVPLPP-RY----FGEGITILGDKLYQLTWKEG-TGFVYD 116 (264)
T ss_dssp EEEEEEEETTEEEEEECST----TEEEEEEEETTTSSEEEEEE-TT-T------EEEEEEETTEEEEEESSSS-EEEEEE
T ss_pred CccEEecCCCEEEEeCCCC----CcEEEEEEECCCCcEEEEEECCc-cc----cceeEEEECCEEEEEEecCC-eEEEEc
Confidence 44553 467777443332 3457999999998764 579998 33 33357888999998887654 333332
Q ss_pred EeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcE-EEEEE
Q 040444 287 MKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKL-KTVKI 352 (409)
Q Consensus 287 l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~-~~v~~ 352 (409)
. ....++.++.... ..=|.+. +++.+++..+..+|...|+++-+. +.|.+
T Consensus 117 ~------~tl~~~~~~~y~~--------EGWGLt~--dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 117 P------NTLKKIGTFPYPG--------EGWGLTS--DGKRLIMSDGSSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp T------TTTEEEEEEE-SS--------S--EEEE--CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred c------ccceEEEEEecCC--------cceEEEc--CCCEEEEECCccceEEECCcccceEEEEEE
Confidence 2 2345555555431 1113334 677788877777899999988654 44443
No 63
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=66.80 E-value=1.3e+02 Score=29.22 Aligned_cols=138 Identities=12% Similarity=0.151 Sum_probs=72.7
Q ss_pred EEEEEEcCCC--ceEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcc--eee-e
Q 040444 174 EVKVFSLKNR--SWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEE--FRL-L 248 (409)
Q Consensus 174 ~~~vyss~t~--~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~--~~~-i 248 (409)
.+.-++..++ .|+.-...|. ... .....++..+|.+|+-.... .+.++|..+.+ |.. +
T Consensus 171 ~l~ald~~tG~~~W~~~~~~~~---------~~~-~~~~sP~v~~~~v~~~~~~g-------~v~a~d~~~G~~~W~~~~ 233 (394)
T PRK11138 171 MLQALNESDGAVKWTVNLDVPS---------LTL-RGESAPATAFGGAIVGGDNG-------RVSAVLMEQGQLIWQQRI 233 (394)
T ss_pred EEEEEEccCCCEeeeecCCCCc---------ccc-cCCCCCEEECCEEEEEcCCC-------EEEEEEccCChhhheecc
Confidence 4566676665 4887544331 111 11245567788888754432 48999988654 543 2
Q ss_pred cCCCCCCCC----CCceEEEEEeCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecC
Q 040444 249 PQPNYGARE----KDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDG 324 (409)
Q Consensus 249 ~lP~~~~~~----~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~ 324 (409)
..|. +... ......-...+|.|++....+ .+..++-...+..|.... . . . ..| .. .
T Consensus 234 ~~~~-~~~~~~~~~~~~~sP~v~~~~vy~~~~~g----~l~ald~~tG~~~W~~~~--~--~----~--~~~-~~----~ 293 (394)
T PRK11138 234 SQPT-GATEIDRLVDVDTTPVVVGGVVYALAYNG----NLVALDLRSGQIVWKREY--G--S----V--NDF-AV----D 293 (394)
T ss_pred ccCC-CccchhcccccCCCcEEECCEEEEEEcCC----eEEEEECCCCCEEEeecC--C--C----c--cCc-EE----E
Confidence 3332 1100 000112234577777655432 234444322246786532 1 0 0 112 22 3
Q ss_pred CCEEEEEEcCcEEEEEECCCCcEE
Q 040444 325 GDKVLLEVNGEKLVWYDWKRKKLK 348 (409)
Q Consensus 325 ~~~ill~~~~~~l~~yd~~~~~~~ 348 (409)
++.|++...++.++.+|.++++..
T Consensus 294 ~~~vy~~~~~g~l~ald~~tG~~~ 317 (394)
T PRK11138 294 GGRIYLVDQNDRVYALDTRGGVEL 317 (394)
T ss_pred CCEEEEEcCCCeEEEEECCCCcEE
Confidence 477888777778999999998753
No 64
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=63.28 E-value=30 Score=27.04 Aligned_cols=42 Identities=14% Similarity=0.305 Sum_probs=29.5
Q ss_pred cEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEE
Q 040444 107 DIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMV 157 (409)
Q Consensus 107 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~ 157 (409)
.+.+.||.|+.| ||..... .......+-+++..+.|+|+...
T Consensus 10 ~Vm~~d~~tk~W--~P~~~~~-------~~ls~V~~~~~~~~~~yrIvg~~ 51 (111)
T cd01207 10 SVMVYDDSNKKW--VPAGGGS-------QGFSRVQIYHHPRNNTFRVVGRK 51 (111)
T ss_pred EeeEEcCCCCcE--EcCCCCC-------CCcceEEEEEcCCCCEEEEEEee
Confidence 578899999985 5543311 13445677788889999999864
No 65
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=62.07 E-value=1.5e+02 Score=28.26 Aligned_cols=123 Identities=13% Similarity=0.125 Sum_probs=71.6
Q ss_pred CCeEEEEeecCCCCCCccEEEEEECCCcc--e---eeecCCCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEEEeec
Q 040444 216 NGVVHWVSPRRPEFGIGNLIVAFDLGLEE--F---RLLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEY 290 (409)
Q Consensus 216 ~G~lywl~~~~~~~~~~~~Il~fDl~~e~--~---~~i~lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~ 290 (409)
+|..-|...... +.|..|++..+. + ..+.+|. +. +.+.....-+|+..++.......+.++.+...
T Consensus 154 dg~~v~v~dlG~-----D~v~~~~~~~~~~~l~~~~~~~~~~-G~---GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~ 224 (345)
T PF10282_consen 154 DGRFVYVPDLGA-----DRVYVYDIDDDTGKLTPVDSIKVPP-GS---GPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS 224 (345)
T ss_dssp TSSEEEEEETTT-----TEEEEEEE-TTS-TEEEEEEEECST-TS---SEEEEEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred CCCEEEEEecCC-----CEEEEEEEeCCCceEEEeecccccc-CC---CCcEEEEcCCcCEEEEecCCCCcEEEEeeccc
Confidence 466556654432 468888887665 4 3356776 33 33322333366655555554558999988832
Q ss_pred CCCCceeEEEEeecccccCC-cceeeeEEEEeecCCCEEEEEEc-CcEEEEEEC--CCCcEEEEE
Q 040444 291 GLKESWSKMFSIDRCRSISS-FRFLRPLICSNEDGGDKVLLEVN-GEKLVWYDW--KRKKLKTVK 351 (409)
Q Consensus 291 ~~~~~W~~~~~I~~~~~~~~-~~~~~p~~~~~~~~~~~ill~~~-~~~l~~yd~--~~~~~~~v~ 351 (409)
...++...+++....... .....-+.+.+ +|..+++... ...|..|++ .+++++.++
T Consensus 225 --~g~~~~~~~~~~~~~~~~~~~~~~~i~isp--dg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~ 285 (345)
T PF10282_consen 225 --DGSLTEIQTISTLPEGFTGENAPAEIAISP--DGRFLYVSNRGSNSISVFDLDPATGTLTLVQ 285 (345)
T ss_dssp --TTEEEEEEEEESCETTSCSSSSEEEEEE-T--TSSEEEEEECTTTEEEEEEECTTTTTEEEEE
T ss_pred --CCceeEEEEeeeccccccccCCceeEEEec--CCCEEEEEeccCCEEEEEEEecCCCceEEEE
Confidence 246777777775422111 11344567777 8888887643 355888877 567887765
No 66
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=61.73 E-value=19 Score=27.87 Aligned_cols=40 Identities=15% Similarity=0.275 Sum_probs=29.7
Q ss_pred ccEEEEccccc-ceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEE
Q 040444 106 QDIALFNPATR-QLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMV 157 (409)
Q Consensus 106 ~~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~ 157 (409)
..+++.||.|+ .|. |..+ ......+-+|+..+.|+||.+.
T Consensus 11 A~V~~yd~~tKk~Wv--Ps~~----------~~~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 11 AHVFQIDPKTKKNWI--PASK----------HAVTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred eEEEEECCCCcceeE--eCCC----------CceeEEEEecCCCcEEEEEEec
Confidence 36889999986 664 4433 2345778889999999999864
No 67
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=60.55 E-value=9.2 Score=24.69 Aligned_cols=21 Identities=14% Similarity=0.093 Sum_probs=17.7
Q ss_pred ccEEEEcccccceeccCCCCC
Q 040444 106 QDIALFNPATRQLFKLPVEYI 126 (409)
Q Consensus 106 ~~~~V~NP~T~~~~~LP~~~~ 126 (409)
+.+++.||.|++|..++..|.
T Consensus 19 nd~~~~~~~~~~W~~~~~~P~ 39 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRIGDLPP 39 (49)
T ss_pred cCEEEEECCCCEEEECCCCCC
Confidence 468999999999999976654
No 68
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=60.03 E-value=87 Score=28.90 Aligned_cols=103 Identities=12% Similarity=0.030 Sum_probs=57.2
Q ss_pred EEEEEECCCcceeeecCCCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcce
Q 040444 234 LIVAFDLGLEEFRLLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRF 313 (409)
Q Consensus 234 ~Il~fDl~~e~~~~i~lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~ 313 (409)
.|..+|-++.++..+++|. .....+..--+..-.|.|.+....+-.. .|+-+. .=.+++..+. .. .
T Consensus 125 aI~R~dpkt~evt~f~lp~-~~a~~nlet~vfD~~G~lWFt~q~G~yG----rLdPa~---~~i~vfpaPq--G~----g 190 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLPL-EHADANLETAVFDPWGNLWFTGQIGAYG----RLDPAR---NVISVFPAPQ--GG----G 190 (353)
T ss_pred eeEEecCcccceEEeeccc-ccCCCcccceeeCCCccEEEeeccccce----ecCccc---CceeeeccCC--CC----C
Confidence 4999999999999999997 4423344323344467776665532200 222211 1122332221 11 1
Q ss_pred eeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcEEEEEE
Q 040444 314 LRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKLKTVKI 352 (409)
Q Consensus 314 ~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~~~v~~ 352 (409)
..-++..+ +|.+-+-...+..|...|+.+..-+++..
T Consensus 191 pyGi~atp--dGsvwyaslagnaiaridp~~~~aev~p~ 227 (353)
T COG4257 191 PYGICATP--DGSVWYASLAGNAIARIDPFAGHAEVVPQ 227 (353)
T ss_pred CcceEECC--CCcEEEEeccccceEEcccccCCcceecC
Confidence 12345555 76654544455669999998887666644
No 69
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=58.01 E-value=26 Score=19.98 Aligned_cols=25 Identities=16% Similarity=0.060 Sum_probs=19.9
Q ss_pred CCEEEEEEcCcEEEEEECCCCcEEE
Q 040444 325 GDKVLLEVNGEKLVWYDWKRKKLKT 349 (409)
Q Consensus 325 ~~~ill~~~~~~l~~yd~~~~~~~~ 349 (409)
++.+++...++.++.+|.++++...
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEE
Confidence 3578887777889999999988654
No 70
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=57.77 E-value=1.4e+02 Score=26.77 Aligned_cols=109 Identities=12% Similarity=0.105 Sum_probs=57.5
Q ss_pred EEEEEECCCcce-eeecCCCCCCCCCCc-eEEEE-EeCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCC
Q 040444 234 LIVAFDLGLEEF-RLLPQPNYGAREKDF-VLDVG-ALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISS 310 (409)
Q Consensus 234 ~Il~fDl~~e~~-~~i~lP~~~~~~~~~-~~~L~-~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~ 310 (409)
.|..+|+.+.+. ..+.....+...... ...+. .-+|+..++.......+.||-++. |.....+....
T Consensus 180 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~------~~~~~~~~~~~---- 249 (300)
T TIGR03866 180 TVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT------YEVLDYLLVGQ---- 249 (300)
T ss_pred EEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC------CcEEEEEEeCC----
Confidence 488899987654 333322101100011 11122 235555444433344788885542 44443333211
Q ss_pred cceeeeEEEEeecCCCEEEEEE-cCcEEEEEECCCCcE-EEEEEeCCC
Q 040444 311 FRFLRPLICSNEDGGDKVLLEV-NGEKLVWYDWKRKKL-KTVKIDGGP 356 (409)
Q Consensus 311 ~~~~~p~~~~~~~~~~~ill~~-~~~~l~~yd~~~~~~-~~v~~~~~~ 356 (409)
....+.+.+ +|..|+... .++.|..||+++++. +++.+.+.+
T Consensus 250 --~~~~~~~~~--~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~ 293 (300)
T TIGR03866 250 --RVWQLAFTP--DEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLP 293 (300)
T ss_pred --CcceEEECC--CCCEEEEEcCCCCeEEEEECCCCcEEEEEEccccc
Confidence 133467777 777776643 356799999999995 667665443
No 71
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=56.58 E-value=1.9e+02 Score=27.73 Aligned_cols=109 Identities=18% Similarity=0.162 Sum_probs=57.1
Q ss_pred cceEEECCeEEEEeecCCCCCCccEEEEEECCCcc--eeeecCCCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEEE
Q 040444 210 GYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEE--FRLLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMM 287 (409)
Q Consensus 210 ~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~--~~~i~lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l 287 (409)
..++..+|.+|...... .|.+||..+.+ |+ ..++. .. .. .....++.+++..... .+..+
T Consensus 59 ~~p~v~~~~v~v~~~~g-------~v~a~d~~tG~~~W~-~~~~~-~~-~~----~p~v~~~~v~v~~~~g----~l~al 120 (377)
T TIGR03300 59 LQPAVAGGKVYAADADG-------TVVALDAETGKRLWR-VDLDE-RL-SG----GVGADGGLVFVGTEKG----EVIAL 120 (377)
T ss_pred cceEEECCEEEEECCCC-------eEEEEEccCCcEeee-ecCCC-Cc-cc----ceEEcCCEEEEEcCCC----EEEEE
Confidence 34567788888765443 49999987654 43 34443 22 11 1233455555433221 23444
Q ss_pred eecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcEEE
Q 040444 288 KEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKLKT 349 (409)
Q Consensus 288 ~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~~~ 349 (409)
+-...+..|.... + . .....|+. .++.+++...++.|+.+|+++++...
T Consensus 121 d~~tG~~~W~~~~--~--~----~~~~~p~v-----~~~~v~v~~~~g~l~a~d~~tG~~~W 169 (377)
T TIGR03300 121 DAEDGKELWRAKL--S--S----EVLSPPLV-----ANGLVVVRTNDGRLTALDAATGERLW 169 (377)
T ss_pred ECCCCcEeeeecc--C--c----eeecCCEE-----ECCEEEEECCCCeEEEEEcCCCceee
Confidence 4211245675421 1 0 00112322 23667777667779999999887543
No 72
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=56.21 E-value=2.3e+02 Score=28.60 Aligned_cols=66 Identities=26% Similarity=0.551 Sum_probs=39.3
Q ss_pred ccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEEEEEcCCC--
Q 040444 106 QDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNR-- 183 (409)
Q Consensus 106 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~vyss~t~-- 183 (409)
..+.|.|-+|+||. +|....+.|. .+..+||.+|. -++++++.... ...+.=+.|.+...
T Consensus 57 DELHvYNTatnqWf-~PavrGDiPp-----gcAA~GfvcdG----trilvFGGMvE--------YGkYsNdLYELQasRW 118 (830)
T KOG4152|consen 57 DELHVYNTATNQWF-APAVRGDIPP-----GCAAFGFVCDG----TRILVFGGMVE--------YGKYSNDLYELQASRW 118 (830)
T ss_pred hhhhhhccccceee-cchhcCCCCC-----chhhcceEecC----ceEEEEccEee--------eccccchHHHhhhhhh
Confidence 36899999999997 4544433332 44556666663 35666654332 22344457777664
Q ss_pred ceEEcc
Q 040444 184 SWTRVK 189 (409)
Q Consensus 184 ~Wr~~~ 189 (409)
.|+++.
T Consensus 119 eWkrlk 124 (830)
T KOG4152|consen 119 EWKRLK 124 (830)
T ss_pred hHhhcC
Confidence 466654
No 73
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=56.20 E-value=22 Score=21.49 Aligned_cols=25 Identities=20% Similarity=0.049 Sum_probs=19.8
Q ss_pred CEEEEEEcCcEEEEEECCCCcEEEE
Q 040444 326 DKVLLEVNGEKLVWYDWKRKKLKTV 350 (409)
Q Consensus 326 ~~ill~~~~~~l~~yd~~~~~~~~v 350 (409)
+.|++...++.++.+|.+|++...-
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~ 25 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWK 25 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEE
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEe
Confidence 3577776677899999999997663
No 74
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=55.85 E-value=1.8e+02 Score=27.24 Aligned_cols=96 Identities=7% Similarity=0.144 Sum_probs=50.5
Q ss_pred EEEEEECC-Ccceeeec-CCCCCCCCCCceEEEEEe-CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCC
Q 040444 234 LIVAFDLG-LEEFRLLP-QPNYGAREKDFVLDVGAL-EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISS 310 (409)
Q Consensus 234 ~Il~fDl~-~e~~~~i~-lP~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~ 310 (409)
.|.+|++. +.++..+. .|. .. ... .+... +|+..++.......+.+|-+++++. .......+..
T Consensus 58 ~i~~~~~~~~g~l~~~~~~~~-~~--~p~--~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~--~~~~~~~~~~------ 124 (330)
T PRK11028 58 RVLSYRIADDGALTFAAESPL-PG--SPT--HISTDHQGRFLFSASYNANCVSVSPLDKDGI--PVAPIQIIEG------ 124 (330)
T ss_pred cEEEEEECCCCceEEeeeecC-CC--Cce--EEEECCCCCEEEEEEcCCCeEEEEEECCCCC--CCCceeeccC------
Confidence 48888886 44554432 221 11 111 23333 5665555554456899999976442 1222222211
Q ss_pred cceeeeEEEEeecCCCEEEEEEc-CcEEEEEECCC
Q 040444 311 FRFLRPLICSNEDGGDKVLLEVN-GEKLVWYDWKR 344 (409)
Q Consensus 311 ~~~~~p~~~~~~~~~~~ill~~~-~~~l~~yd~~~ 344 (409)
......+.+.+ +|+.+++... +..+..||+++
T Consensus 125 ~~~~~~~~~~p--~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 125 LEGCHSANIDP--DNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred CCcccEeEeCC--CCCEEEEeeCCCCEEEEEEECC
Confidence 01123345666 7777766543 46799999876
No 75
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=55.27 E-value=2e+02 Score=27.62 Aligned_cols=111 Identities=12% Similarity=0.052 Sum_probs=65.9
Q ss_pred eEEECCeEEEEeecCCCCCCccEEEEEECCCcc--eeeecCC-CCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEEEe
Q 040444 212 GVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEE--FRLLPQP-NYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMK 288 (409)
Q Consensus 212 ~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~--~~~i~lP-~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~ 288 (409)
++..+|.+|...... .|.+||..+.+ |+.-..+ .... .. -+...+|++++-.... .++.++
T Consensus 64 ~~~~dg~v~~~~~~G-------~i~A~d~~~g~~~W~~~~~~~~~~~-~~----~~~~~~G~i~~g~~~g----~~y~ld 127 (370)
T COG1520 64 PADGDGTVYVGTRDG-------NIFALNPDTGLVKWSYPLLGAVAQL-SG----PILGSDGKIYVGSWDG----KLYALD 127 (370)
T ss_pred cEeeCCeEEEecCCC-------cEEEEeCCCCcEEecccCcCcceec-cC----ceEEeCCeEEEecccc----eEEEEE
Confidence 589999999985544 39999998765 6543332 1011 11 1223378866655443 788888
Q ss_pred ecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcEEE
Q 040444 289 EYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKLKT 349 (409)
Q Consensus 289 ~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~~~ 349 (409)
+......|.....- . .....|..+ ..+.|++..++..++..|..+++...
T Consensus 128 ~~~G~~~W~~~~~~--~-----~~~~~~~v~----~~~~v~~~s~~g~~~al~~~tG~~~W 177 (370)
T COG1520 128 ASTGTLVWSRNVGG--S-----PYYASPPVV----GDGTVYVGTDDGHLYALNADTGTLKW 177 (370)
T ss_pred CCCCcEEEEEecCC--C-----eEEecCcEE----cCcEEEEecCCCeEEEEEccCCcEEE
Confidence 73225678765433 0 112223222 23667766556779999999888654
No 76
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=55.21 E-value=2.7e+02 Score=29.47 Aligned_cols=122 Identities=14% Similarity=0.180 Sum_probs=64.8
Q ss_pred ceEEECCeEEEEeecCCCC-----CCccEEEEEECCCcceeeecCCCCCCC----CCCceEEEE---EeCCeEEEEEecC
Q 040444 211 YGVYVNGVVHWVSPRRPEF-----GIGNLIVAFDLGLEEFRLLPQPNYGAR----EKDFVLDVG---ALEGHMCLMCNYD 278 (409)
Q Consensus 211 ~~v~~~G~lywl~~~~~~~-----~~~~~Il~fDl~~e~~~~i~lP~~~~~----~~~~~~~L~---~~~G~L~~~~~~~ 278 (409)
..++..+.-||+....... ...-.+++-+.+++.|....+|.+..- -....+.-+ .-++-|++-+..
T Consensus 250 ~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~k- 328 (893)
T KOG0291|consen 250 KIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSK- 328 (893)
T ss_pred ceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCc-
Confidence 3466777788887442211 223469999999999999999985431 111122111 124445443332
Q ss_pred CCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCc
Q 040444 279 LVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKK 346 (409)
Q Consensus 279 ~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~ 346 (409)
...+-||..+. ++.+++ ... .+....-+.+.+ ||-.|.-..+++++=.||..++.
T Consensus 329 lgQLlVweWqs----EsYVlK----QQg---H~~~i~~l~YSp--Dgq~iaTG~eDgKVKvWn~~Sgf 383 (893)
T KOG0291|consen 329 LGQLLVWEWQS----ESYVLK----QQG---HSDRITSLAYSP--DGQLIATGAEDGKVKVWNTQSGF 383 (893)
T ss_pred cceEEEEEeec----cceeee----ccc---cccceeeEEECC--CCcEEEeccCCCcEEEEeccCce
Confidence 34888888764 223322 211 111233455555 55554444455566666666543
No 77
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=54.63 E-value=1.5e+02 Score=26.10 Aligned_cols=120 Identities=14% Similarity=0.169 Sum_probs=60.5
Q ss_pred EECCeEEEEeecCCCCCCccEEEEEECCCcceeeecCCCCCC-CCCCceEEEEEe--CC--eEEEEEec----CCCeEEE
Q 040444 214 YVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGA-REKDFVLDVGAL--EG--HMCLMCNY----DLVKVDV 284 (409)
Q Consensus 214 ~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~-~~~~~~~~L~~~--~G--~L~~~~~~----~~~~~~I 284 (409)
.+||-+ ++.... .++..|..+.++..+|.|+... ........++-. .+ ++..+... ....++|
T Consensus 3 sCnGLl-c~~~~~-------~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~V 74 (230)
T TIGR01640 3 PCDGLI-CFSYGK-------RLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQV 74 (230)
T ss_pred ccceEE-EEecCC-------cEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEE
Confidence 467777 444321 3899999999999998776211 011101112211 11 12111111 1236677
Q ss_pred EEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcC-----cEEEEEECCCCcEEE-EEEe
Q 040444 285 WMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNG-----EKLVWYDWKRKKLKT-VKID 353 (409)
Q Consensus 285 W~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~-----~~l~~yd~~~~~~~~-v~~~ 353 (409)
..+.. .+|...... .... . .... ++.- +|..-++.... ..++.||++++++++ +..+
T Consensus 75 ys~~~----~~Wr~~~~~-~~~~---~-~~~~-~v~~--~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P 137 (230)
T TIGR01640 75 YTLGS----NSWRTIECS-PPHH---P-LKSR-GVCI--NGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLP 137 (230)
T ss_pred EEeCC----CCccccccC-CCCc---c-ccCC-eEEE--CCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecC
Confidence 77664 469876521 1111 0 1111 3333 44433333221 159999999999995 6554
No 78
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=54.53 E-value=2.1e+02 Score=27.78 Aligned_cols=121 Identities=12% Similarity=0.071 Sum_probs=66.0
Q ss_pred EECCeEEEEeecCCCCCCccEEEEEECCCcc---eeeecCCCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEEEeec
Q 040444 214 YVNGVVHWVSPRRPEFGIGNLIVAFDLGLEE---FRLLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEY 290 (409)
Q Consensus 214 ~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~---~~~i~lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~ 290 (409)
..++.+|.++.... ....|++.|+.+-. |..+-.|+ . ....-..+...++.|.+....+. .-.|.+++-.
T Consensus 285 ~~~~~~yi~Tn~~a---~~~~l~~~~l~~~~~~~~~~~l~~~-~--~~~~l~~~~~~~~~Lvl~~~~~~-~~~l~v~~~~ 357 (414)
T PF02897_consen 285 HHGDRLYILTNDDA---PNGRLVAVDLADPSPAEWWTVLIPE-D--EDVSLEDVSLFKDYLVLSYRENG-SSRLRVYDLD 357 (414)
T ss_dssp EETTEEEEEE-TT----TT-EEEEEETTSTSGGGEEEEEE---S--SSEEEEEEEEETTEEEEEEEETT-EEEEEEEETT
T ss_pred ccCCEEEEeeCCCC---CCcEEEEecccccccccceeEEcCC-C--CceeEEEEEEECCEEEEEEEECC-ccEEEEEECC
Confidence 45778888776433 34579999998654 55433333 1 11112245567888887776654 4444444431
Q ss_pred CCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcC----cEEEEEECCCCcEEEEE
Q 040444 291 GLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNG----EKLVWYDWKRKKLKTVK 351 (409)
Q Consensus 291 ~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~----~~l~~yd~~~~~~~~v~ 351 (409)
..|. ...+.++.. .....+.... +++.+++...+ ..++.||+++++.+.+.
T Consensus 358 ---~~~~-~~~~~~p~~----g~v~~~~~~~--~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 358 ---DGKE-SREIPLPEA----GSVSGVSGDF--DSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp ----TEE-EEEEESSSS----SEEEEEES-T--T-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred ---CCcE-EeeecCCcc----eEEeccCCCC--CCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 1243 333444321 1112222223 67888887542 46999999999998764
No 79
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=52.27 E-value=3.2e+02 Score=29.40 Aligned_cols=32 Identities=16% Similarity=0.369 Sum_probs=23.7
Q ss_pred ccceEEECCeEEEEeecCCCCCCccEEEEEECCC--cceee
Q 040444 209 RGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGL--EEFRL 247 (409)
Q Consensus 209 ~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~--e~~~~ 247 (409)
...++.++|.+|..+... .|+++|..+ +.|+.
T Consensus 187 e~TPlvvgg~lYv~t~~~-------~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 187 QATPLKVGDTLYLCTPHN-------KVIALDAATGKEKWKF 220 (764)
T ss_pred ccCCEEECCEEEEECCCC-------eEEEEECCCCcEEEEE
Confidence 456789999999876543 499999885 45654
No 80
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=51.71 E-value=2.8e+02 Score=28.32 Aligned_cols=119 Identities=18% Similarity=0.162 Sum_probs=62.6
Q ss_pred cceEEECCeEEEEeecCCCCCCccEEEEEECCCc--ceee-ecCCCCCCCC----CCceEEEEEeCCeEEEEEecCCCeE
Q 040444 210 GYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLE--EFRL-LPQPNYGARE----KDFVLDVGALEGHMCLMCNYDLVKV 282 (409)
Q Consensus 210 ~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e--~~~~-i~lP~~~~~~----~~~~~~L~~~~G~L~~~~~~~~~~~ 282 (409)
..++..+|.+|...... .|.++|..+. .|+. ...|. .... ......+...+|++++.....
T Consensus 63 stPvv~~g~vyv~s~~g-------~v~AlDa~TGk~lW~~~~~~~~-~~~~~~~~~~~~rg~av~~~~v~v~t~dg---- 130 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSYS-------RVYALDAKTGKELWKYDPKLPD-DVIPVMCCDVVNRGVALYDGKVFFGTLDA---- 130 (527)
T ss_pred cCCEEECCEEEEECCCC-------cEEEEECCCCceeeEecCCCCc-ccccccccccccccceEECCEEEEEcCCC----
Confidence 45678899999765433 3999998864 4654 23332 1100 000112344567766544322
Q ss_pred EEEEEeecCCCCceeEEEEeecccccCCcc-eeeeEEEEeecCCCEEEEEEc------CcEEEEEECCCCcEEE
Q 040444 283 DVWMMKEYGLKESWSKMFSIDRCRSISSFR-FLRPLICSNEDGGDKVLLEVN------GEKLVWYDWKRKKLKT 349 (409)
Q Consensus 283 ~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~-~~~p~~~~~~~~~~~ill~~~------~~~l~~yd~~~~~~~~ 349 (409)
.|..|+....+..|.... .+... ... ...|+.. + +.|++... .+.|+.+|.+|++...
T Consensus 131 ~l~ALDa~TGk~~W~~~~-~~~~~---~~~~tssP~v~----~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW 195 (527)
T TIGR03075 131 RLVALDAKTGKVVWSKKN-GDYKA---GYTITAAPLVV----K-GKVITGISGGEFGVRGYVTAYDAKTGKLVW 195 (527)
T ss_pred EEEEEECCCCCEEeeccc-ccccc---cccccCCcEEE----C-CEEEEeecccccCCCcEEEEEECCCCceeE
Confidence 356665433356776533 11110 011 1234433 2 56666542 3569999999998654
No 81
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=50.26 E-value=3.6e+02 Score=29.15 Aligned_cols=73 Identities=15% Similarity=0.186 Sum_probs=36.1
Q ss_pred CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCc
Q 040444 268 EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKK 346 (409)
Q Consensus 268 ~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~ 346 (409)
+|.+..+..+.. .+.||-+++......|..+..-. . ....+.+.-++.++ +|+.+++...+..+..|+.++-+
T Consensus 149 ~~~fLAvss~dG-~v~iw~~~~~~~~~tl~~v~k~n--~-~~~s~i~~~~aW~P--k~g~la~~~~d~~Vkvy~r~~we 221 (933)
T KOG1274|consen 149 KGNFLAVSSCDG-KVQIWDLQDGILSKTLTGVDKDN--E-FILSRICTRLAWHP--KGGTLAVPPVDNTVKVYSRKGWE 221 (933)
T ss_pred CCCEEEEEecCc-eEEEEEcccchhhhhcccCCccc--c-ccccceeeeeeecC--CCCeEEeeccCCeEEEEccCCce
Confidence 444444444433 89999998643333454432111 0 00112233345666 66666655444456666655544
No 82
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=49.26 E-value=2.4e+02 Score=26.79 Aligned_cols=120 Identities=14% Similarity=0.206 Sum_probs=67.0
Q ss_pred CC-eEEEEeecCCCCCCccEEEEEECC--Ccceeee----cCCCCCCCCCCceEEEEEe-CCeEEEEEecCCCeEEEEEE
Q 040444 216 NG-VVHWVSPRRPEFGIGNLIVAFDLG--LEEFRLL----PQPNYGAREKDFVLDVGAL-EGHMCLMCNYDLVKVDVWMM 287 (409)
Q Consensus 216 ~G-~lywl~~~~~~~~~~~~Il~fDl~--~e~~~~i----~lP~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~~IW~l 287 (409)
+| .+|....... .|.+|++. +.++..+ .+|. +.........+... +|+..++.....+.|.++.+
T Consensus 202 dg~~~Yv~~e~s~------~v~v~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 202 DGKYAYVVNELSN------TVSVFDYDPSDGSLTEIQTISTLPE-GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp TSSEEEEEETTTT------EEEEEEEETTTTEEEEEEEEESCET-TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred CcCEEEEecCCCC------cEEEEeecccCCceeEEEEeeeccc-cccccCCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence 55 4555543332 47777777 5555553 3444 33122123344444 67666666666679999999
Q ss_pred eecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEc-CcEEEEE--ECCCCcEEEEE
Q 040444 288 KEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVN-GEKLVWY--DWKRKKLKTVK 351 (409)
Q Consensus 288 ~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~-~~~l~~y--d~~~~~~~~v~ 351 (409)
++.. ..-+.+..++... ...+-+.+.+ +|+.+++... ...+..| |.+++.++.+.
T Consensus 275 d~~~--g~l~~~~~~~~~G-----~~Pr~~~~s~--~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 275 DPAT--GTLTLVQTVPTGG-----KFPRHFAFSP--DGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp CTTT--TTEEEEEEEEESS-----SSEEEEEE-T--TSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred ecCC--CceEEEEEEeCCC-----CCccEEEEeC--CCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 6532 3345555555421 1234466666 8787777653 3455555 67899988764
No 83
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=48.24 E-value=2.1e+02 Score=25.72 Aligned_cols=74 Identities=11% Similarity=0.043 Sum_probs=38.1
Q ss_pred CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeee--EEEEeecCCCEEEEEEc-CcEEEEEECCC
Q 040444 268 EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRP--LICSNEDGGDKVLLEVN-GEKLVWYDWKR 344 (409)
Q Consensus 268 ~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p--~~~~~~~~~~~ill~~~-~~~l~~yd~~~ 344 (409)
+|+..++.......+.+|-++.. ....++.............| +.+.+ ++..+++... ...+..||+++
T Consensus 167 dg~~l~~~~~~~~~v~i~d~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~s~--dg~~~~~~~~~~~~i~v~d~~~ 238 (300)
T TIGR03866 167 DGKELWVSSEIGGTVSVIDVATR------KVIKKITFEIPGVHPEAVQPVGIKLTK--DGKTAFVALGPANRVAVVDAKT 238 (300)
T ss_pred CCCEEEEEcCCCCEEEEEEcCcc------eeeeeeeecccccccccCCccceEECC--CCCEEEEEcCCCCeEEEEECCC
Confidence 55544444433448999987642 22222221100000011122 45566 7777666533 44699999998
Q ss_pred CcEEE
Q 040444 345 KKLKT 349 (409)
Q Consensus 345 ~~~~~ 349 (409)
.+...
T Consensus 239 ~~~~~ 243 (300)
T TIGR03866 239 YEVLD 243 (300)
T ss_pred CcEEE
Confidence 87654
No 84
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=46.45 E-value=3.2e+02 Score=27.48 Aligned_cols=67 Identities=16% Similarity=0.225 Sum_probs=36.8
Q ss_pred eEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcEEEEEEeCCCCcee
Q 040444 281 KVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKLKTVKIDGGPDSFV 360 (409)
Q Consensus 281 ~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~~~v~~~~~~~~~~ 360 (409)
.+.+|. + .+-.|+++..=+ ..-.++++ -| .|.+.+..+..+..|.+++.+-.+...+.+ ..
T Consensus 391 ~v~lW~--~--~k~~wt~~~~d~----------~~~~~fhp--sg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~--ls 451 (626)
T KOG2106|consen 391 HVRLWN--D--HKLEWTKIIEDP----------AECADFHP--SG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQ--LS 451 (626)
T ss_pred eEEEcc--C--CceeEEEEecCc----------eeEeeccC--cc-eEEEeeccceEEEEecccceeEEEEecCCc--eE
Confidence 667776 1 245677754211 22345665 33 566666566777888887766555444322 34
Q ss_pred EeEEEe
Q 040444 361 ACICVE 366 (409)
Q Consensus 361 ~~~y~e 366 (409)
++.|.+
T Consensus 452 ~v~ysp 457 (626)
T KOG2106|consen 452 VVRYSP 457 (626)
T ss_pred EEEEcC
Confidence 444443
No 85
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=45.78 E-value=40 Score=20.50 Aligned_cols=21 Identities=19% Similarity=0.234 Sum_probs=16.2
Q ss_pred CCCEEEEEEcCcEEEEEECCC
Q 040444 324 GGDKVLLEVNGEKLVWYDWKR 344 (409)
Q Consensus 324 ~~~~ill~~~~~~l~~yd~~~ 344 (409)
.++.|++...++.++.+|.+|
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 457899988888899999875
No 86
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=44.36 E-value=2.9e+02 Score=26.38 Aligned_cols=24 Identities=13% Similarity=0.289 Sum_probs=17.4
Q ss_pred cceEEEeeCCccEEEEccccccee
Q 040444 96 NGLLALSNSDQDIALFNPATRQLF 119 (409)
Q Consensus 96 ~GLl~l~~~~~~~~V~NP~T~~~~ 119 (409)
+|.|.+......++.+|+.|++..
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~ 88 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRL 88 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEe
Confidence 666666655567888899998755
No 87
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=43.46 E-value=1.9e+02 Score=29.53 Aligned_cols=98 Identities=14% Similarity=0.194 Sum_probs=50.9
Q ss_pred EEEEECCCcceeeecCCCCCCCCC-CceEEEEEeCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecc----cccC
Q 040444 235 IVAFDLGLEEFRLLPQPNYGAREK-DFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRC----RSIS 309 (409)
Q Consensus 235 Il~fDl~~e~~~~i~lP~~~~~~~-~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~----~~~~ 309 (409)
|..|||+...|-. |- ..+.. -..+.+..++|.|++-. ....++.|-...-. ..-+++.. ...+
T Consensus 157 vYRlNLEqGrfL~---P~-~~~~~~lN~v~in~~hgLla~Gt--~~g~VEfwDpR~ks------rv~~l~~~~~v~s~pg 224 (703)
T KOG2321|consen 157 VYRLNLEQGRFLN---PF-ETDSGELNVVSINEEHGLLACGT--EDGVVEFWDPRDKS------RVGTLDAASSVNSHPG 224 (703)
T ss_pred eEEEEcccccccc---cc-ccccccceeeeecCccceEEecc--cCceEEEecchhhh------hheeeecccccCCCcc
Confidence 9999999998853 11 22111 11235666677665533 23489999766421 12222221 1111
Q ss_pred --CcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCc
Q 040444 310 --SFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKK 346 (409)
Q Consensus 310 --~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~ 346 (409)
.......+.|.. +|=-+=+.+..+.++.||+++.+
T Consensus 225 ~~~~~svTal~F~d--~gL~~aVGts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 225 GDAAPSVTALKFRD--DGLHVAVGTSTGSVLIYDLRASK 261 (703)
T ss_pred ccccCcceEEEecC--CceeEEeeccCCcEEEEEcccCC
Confidence 122234455543 33333344556779999998765
No 88
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=43.33 E-value=54 Score=24.51 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=14.0
Q ss_pred cEEEEEECCCCcEEEE
Q 040444 335 EKLVWYDWKRKKLKTV 350 (409)
Q Consensus 335 ~~l~~yd~~~~~~~~v 350 (409)
++|+.||++|++.+.+
T Consensus 37 GRll~ydp~t~~~~vl 52 (89)
T PF03088_consen 37 GRLLRYDPSTKETTVL 52 (89)
T ss_dssp EEEEEEETTTTEEEEE
T ss_pred cCEEEEECCCCeEEEe
Confidence 5799999999998765
No 89
>PLN00181 protein SPA1-RELATED; Provisional
Probab=40.24 E-value=5.1e+02 Score=27.96 Aligned_cols=101 Identities=9% Similarity=-0.030 Sum_probs=51.2
Q ss_pred EEEEEECCCcceeeecCCCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcce
Q 040444 234 LIVAFDLGLEEFRLLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRF 313 (409)
Q Consensus 234 ~Il~fDl~~e~~~~i~lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~ 313 (409)
.|..+|+.+..-....+.. +...-..+.-.+|...+.... +..+.||-+........|..+..+.-. ...
T Consensus 641 ~I~iwD~~~~~~~~~~~~~----h~~~V~~v~f~~~~~lvs~s~-D~~ikiWd~~~~~~~~~~~~l~~~~gh-----~~~ 710 (793)
T PLN00181 641 KVYYYDLRNPKLPLCTMIG----HSKTVSYVRFVDSSTLVSSST-DNTLKLWDLSMSISGINETPLHSFMGH-----TNV 710 (793)
T ss_pred eEEEEECCCCCccceEecC----CCCCEEEEEEeCCCEEEEEEC-CCEEEEEeCCCCccccCCcceEEEcCC-----CCC
Confidence 4888998764311111111 111111232235555444433 448999998643212345555544321 112
Q ss_pred eeeEEEEeecCCCEEEEEEcCcEEEEEECCCCc
Q 040444 314 LRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKK 346 (409)
Q Consensus 314 ~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~ 346 (409)
...+++.+ ++..|.....++.+..||.....
T Consensus 711 i~~v~~s~--~~~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 711 KNFVGLSV--SDGYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred eeEEEEcC--CCCEEEEEeCCCEEEEEECCCCC
Confidence 23456666 66665555566779999976553
No 90
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=40.04 E-value=1.7e+02 Score=27.31 Aligned_cols=68 Identities=12% Similarity=0.068 Sum_probs=42.8
Q ss_pred CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcE
Q 040444 268 EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKL 347 (409)
Q Consensus 268 ~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~ 347 (409)
+|.+.+....+ ..+-+|...++. +.-|+.+ .. . ...+.+....++..|+-...++.+..||.++++.
T Consensus 58 ~gs~~aSgG~D-r~I~LWnv~gdc-eN~~~lk----gH-----s--gAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~ 124 (338)
T KOG0265|consen 58 DGSCFASGGSD-RAIVLWNVYGDC-ENFWVLK----GH-----S--GAVMELHGMRDGSHILSCGTDKTVRGWDAETGKR 124 (338)
T ss_pred CCCeEeecCCc-ceEEEEeccccc-cceeeec----cc-----c--ceeEeeeeccCCCEEEEecCCceEEEEeccccee
Confidence 56655544444 389999865543 4668765 10 1 1233333222778887777778899999999985
Q ss_pred E
Q 040444 348 K 348 (409)
Q Consensus 348 ~ 348 (409)
.
T Consensus 125 ~ 125 (338)
T KOG0265|consen 125 I 125 (338)
T ss_pred e
Confidence 3
No 91
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=38.56 E-value=19 Score=33.95 Aligned_cols=36 Identities=8% Similarity=0.186 Sum_probs=30.1
Q ss_pred CCCcHHHHHHHHhcCCC--------CceeEEEecccchhhhcCC
Q 040444 2 SKVPLDVVTGTLYQLPV--------KTLLRYRCLSRPLCSIIDD 37 (409)
Q Consensus 2 ~~LP~Dll~eIL~rLP~--------ksL~R~r~VCK~W~~li~~ 37 (409)
++||.+++.+|+.|.-- +++.-+..|||.|+.+..+
T Consensus 46 ~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 46 AALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred hcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 47999999999999862 2588999999999997664
No 92
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=37.19 E-value=4.3e+02 Score=26.29 Aligned_cols=118 Identities=13% Similarity=0.163 Sum_probs=0.0
Q ss_pred eEEECCeEEEEeecCCCCCCccEEEEEECCCcceeeecCCCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEEEeecC
Q 040444 212 GVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYG 291 (409)
Q Consensus 212 ~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~ 291 (409)
.+..+|..-.-+..+.. |..+++.+.+...+..+. +. .....-.-...+|+ +++....+..+.||-+++.+
T Consensus 166 ~fs~~g~~l~~~~~~~~------i~~~~~~~~~~~~~~~l~-~h-~~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~~~~ 236 (456)
T KOG0266|consen 166 DFSPDGRALAAASSDGL------IRIWKLEGIKSNLLRELS-GH-TRGVSDVAFSPDGS-YLLSGSDDKTLRIWDLKDDG 236 (456)
T ss_pred EEcCCCCeEEEccCCCc------EEEeecccccchhhcccc-cc-ccceeeeEECCCCc-EEEEecCCceEEEeeccCCC
Q ss_pred CCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcEEEE
Q 040444 292 LKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKLKTV 350 (409)
Q Consensus 292 ~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~~~v 350 (409)
..+.++.- ......-++|.+ .|..|+-...++.+..||+++++..+.
T Consensus 237 -----~~~~~l~g-----H~~~v~~~~f~p--~g~~i~Sgs~D~tvriWd~~~~~~~~~ 283 (456)
T KOG0266|consen 237 -----RNLKTLKG-----HSTYVTSVAFSP--DGNLLVSGSDDGTVRIWDVRTGECVRK 283 (456)
T ss_pred -----eEEEEecC-----CCCceEEEEecC--CCCEEEEecCCCcEEEEeccCCeEEEe
No 93
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=36.29 E-value=41 Score=33.17 Aligned_cols=30 Identities=20% Similarity=0.539 Sum_probs=0.0
Q ss_pred ecCCCEEEEEEcCcEEEEEECCCCcEEEEEE
Q 040444 322 EDGGDKVLLEVNGEKLVWYDWKRKKLKTVKI 352 (409)
Q Consensus 322 ~~~~~~ill~~~~~~l~~yd~~~~~~~~v~~ 352 (409)
+.+|..|+++..+. ++.||+++..++++.|
T Consensus 275 nsDGkrIvFq~~Gd-IylydP~td~lekldI 304 (668)
T COG4946 275 NSDGKRIVFQNAGD-IYLYDPETDSLEKLDI 304 (668)
T ss_pred CCCCcEEEEecCCc-EEEeCCCcCcceeeec
No 94
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=33.55 E-value=1.9e+02 Score=29.90 Aligned_cols=55 Identities=25% Similarity=0.336 Sum_probs=39.8
Q ss_pred EEEEEECCCcceee----ecCCCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEEEeecC
Q 040444 234 LIVAFDLGLEEFRL----LPQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYG 291 (409)
Q Consensus 234 ~Il~fDl~~e~~~~----i~lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~ 291 (409)
.|.-||...-.|+. +..|. . +.+..+.|.-..|..+++...++.++..|-+++.+
T Consensus 75 ~i~l~dt~~~~fr~ee~~lk~~~-a--H~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 75 GIILFDTKSIVFRLEERQLKKPL-A--HKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred ceeeecchhhhcchhhhhhcccc-c--ccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence 38999999888871 23333 1 33434566666799999999988899999999753
No 95
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=32.69 E-value=4.3e+02 Score=24.93 Aligned_cols=109 Identities=16% Similarity=0.223 Sum_probs=54.1
Q ss_pred ceEEECCeEEEEeecCCCCCCccEEEEEECCCcce-eeecCCCCCCCCCCceEEEEEeCCeE---EEEEecCCCeEEEEE
Q 040444 211 YGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEF-RLLPQPNYGAREKDFVLDVGALEGHM---CLMCNYDLVKVDVWM 286 (409)
Q Consensus 211 ~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~-~~i~lP~~~~~~~~~~~~L~~~~G~L---~~~~~~~~~~~~IW~ 286 (409)
.+|-++|-.---...+ +-|..||+.+..= ..+-.|. +. +.-....+.+ .++...++..|.||.
T Consensus 47 tavAVs~~~~aSGssD------etI~IYDm~k~~qlg~ll~Ha-gs------itaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 47 TALAVSGPYVASGSSD------ETIHIYDMRKRKQLGILLSHA-GS------ITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred eEEEecceeEeccCCC------CcEEEEeccchhhhcceeccc-cc------eEEEEecCCcchhheeeecCCCcEEEEE
Confidence 4566776532222222 3499999986543 2233332 21 1112223333 455555556899998
Q ss_pred EeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEE-cCcEEEEEECCCCc
Q 040444 287 MKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEV-NGEKLVWYDWKRKK 346 (409)
Q Consensus 287 l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~-~~~~l~~yd~~~~~ 346 (409)
.+. |....++..... .+.-+++++ - +++-|.. ++..+-.||+-+++
T Consensus 114 ~~~------W~~~~slK~H~~-----~Vt~lsiHP--S-~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 114 VGS------WELLKSLKAHKG-----QVTDLSIHP--S-GKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred cCC------eEEeeeeccccc-----ccceeEecC--C-CceEEEEcCCceeeeehhhcCc
Confidence 553 988887765321 134455555 2 3333332 23334455554444
No 96
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=32.49 E-value=1.6e+02 Score=29.07 Aligned_cols=100 Identities=13% Similarity=0.124 Sum_probs=53.8
Q ss_pred eEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCC-EEEEEEcCcEEEEEECCCCcEEEEEE-eCCCCc
Q 040444 281 KVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGD-KVLLEVNGEKLVWYDWKRKKLKTVKI-DGGPDS 358 (409)
Q Consensus 281 ~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~-~ill~~~~~~l~~yd~~~~~~~~v~~-~~~~~~ 358 (409)
.+.|..++.-- . .++..|-+.... ..-..+.+ +|. .|+.......++.||+++.++.++.. .|.+..
T Consensus 236 ~lrifqvDGk~--N--~~lqS~~l~~fP-----i~~a~f~p--~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~ 304 (514)
T KOG2055|consen 236 TLRIFQVDGKV--N--PKLQSIHLEKFP-----IQKAEFAP--NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEK 304 (514)
T ss_pred cEEEEEecCcc--C--hhheeeeeccCc-----cceeeecC--CCceEEEecccceEEEEeeccccccccccCCCCcccc
Confidence 67777766422 2 266666654321 22345556 766 55555545569999999999998864 333211
Q ss_pred ---eeEeEEEeccccCCCCCCchhhhhhHHHHHhhh
Q 040444 359 ---FVACICVESLIPLDNGSHGIILKKLQEQKEKKT 391 (409)
Q Consensus 359 ---~~~~~y~eSlv~~~~~~~~~~~~~~~~~~~~~~ 391 (409)
...+....+++-+...+.++-+=-.+-+|..++
T Consensus 305 ~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s 340 (514)
T KOG2055|consen 305 SMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITS 340 (514)
T ss_pred hhheeEecCCCCeEEEcccCceEEeehhhhhhhhhe
Confidence 112233344555544444443333444444444
No 97
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.26 E-value=1.9e+02 Score=27.64 Aligned_cols=116 Identities=13% Similarity=0.126 Sum_probs=0.0
Q ss_pred EEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEECC-eEEEEeecCCCC------------------------
Q 040444 175 VKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNG-VVHWVSPRRPEF------------------------ 229 (409)
Q Consensus 175 ~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G-~lywl~~~~~~~------------------------ 229 (409)
+..|+..+++|..++... ........++..++ .+|....-....
T Consensus 115 ~Y~y~p~~nsW~kl~t~s-----------P~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~ 183 (381)
T COG3055 115 AYRYDPSTNSWHKLDTRS-----------PTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAH 183 (381)
T ss_pred eEEecCCCChhheecccc-----------ccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHH
Q ss_pred ---------CCccEEEEEECCCcceeeec-CCCCCCCCCCceEEEEEeCCeEEEEEec---CCCeEEEEEEeecCCCCce
Q 040444 230 ---------GIGNLIVAFDLGLEEFRLLP-QPNYGAREKDFVLDVGALEGHMCLMCNY---DLVKVDVWMMKEYGLKESW 296 (409)
Q Consensus 230 ---------~~~~~Il~fDl~~e~~~~i~-lP~~~~~~~~~~~~L~~~~G~L~~~~~~---~~~~~~IW~l~~~~~~~~W 296 (409)
-....+++||..+++|+..- .|- ........+.-++.|.++... .-.+-++|+.+-.++...|
T Consensus 184 yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf----~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w 259 (381)
T COG3055 184 YFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPF----YGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKW 259 (381)
T ss_pred HhCCCHHHhcccccccccccccchhhhcCcCcc----cCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceee
Q ss_pred eEEEEeecc
Q 040444 297 SKMFSIDRC 305 (409)
Q Consensus 297 ~~~~~I~~~ 305 (409)
.+.-..+.+
T Consensus 260 ~~l~~lp~~ 268 (381)
T COG3055 260 LKLSDLPAP 268 (381)
T ss_pred eeccCCCCC
No 98
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.98 E-value=2.7e+02 Score=30.17 Aligned_cols=91 Identities=16% Similarity=0.295 Sum_probs=51.8
Q ss_pred EEeCCeEEEEE-ecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECC
Q 040444 265 GALEGHMCLMC-NYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWK 343 (409)
Q Consensus 265 ~~~~G~L~~~~-~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~ 343 (409)
....+.|=++. ..++..+.+|.|.++ ..|+.-. ..+.+....-+-|++ +-+.|+-+..++.+-.||+.
T Consensus 212 aAfhpTlpliVSG~DDRqVKlWrmnet---KaWEvDt------crgH~nnVssvlfhp--~q~lIlSnsEDksirVwDm~ 280 (1202)
T KOG0292|consen 212 AAFHPTLPLIVSGADDRQVKLWRMNET---KAWEVDT------CRGHYNNVSSVLFHP--HQDLILSNSEDKSIRVWDMT 280 (1202)
T ss_pred EEecCCcceEEecCCcceeeEEEeccc---cceeehh------hhcccCCcceEEecC--ccceeEecCCCccEEEEecc
Confidence 34444443332 233458999999984 4586532 112233445566777 66777766667779999999
Q ss_pred CCcE-EEEEEeCCCCceeEeEEEecc
Q 040444 344 RKKL-KTVKIDGGPDSFVACICVESL 368 (409)
Q Consensus 344 ~~~~-~~v~~~~~~~~~~~~~y~eSl 368 (409)
.++- ..+.-.+ .+|+...-.|+|
T Consensus 281 kRt~v~tfrren--dRFW~laahP~l 304 (1202)
T KOG0292|consen 281 KRTSVQTFRREN--DRFWILAAHPEL 304 (1202)
T ss_pred cccceeeeeccC--CeEEEEEecCCc
Confidence 8873 3332233 234444444433
No 99
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=27.83 E-value=7.5e+02 Score=26.19 Aligned_cols=238 Identities=16% Similarity=0.169 Sum_probs=0.0
Q ss_pred cccceEEEeeCCccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceec
Q 040444 94 SCNGLLALSNSDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEY 173 (409)
Q Consensus 94 sc~GLl~l~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~ 173 (409)
|.||=.+.....+.+.+..-.|++.. +|......++ ....+.+..| +.+-+.... ..
T Consensus 28 s~nG~~L~t~~~d~Vi~idv~t~~~~-l~s~~~ed~d-----~ita~~l~~d---~~~L~~a~r--------------s~ 84 (775)
T KOG0319|consen 28 SSNGQHLYTACGDRVIIIDVATGSIA-LPSGSNEDED-----EITALALTPD---EEVLVTASR--------------SQ 84 (775)
T ss_pred CCCCCEEEEecCceEEEEEccCCcee-cccCCccchh-----hhheeeecCC---ccEEEEeec--------------cc
Q ss_pred EEEEEEcCC----CceEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcceeeec
Q 040444 174 EVKVFSLKN----RSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLP 249 (409)
Q Consensus 174 ~~~vyss~t----~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~ 249 (409)
-.++|++.+ ++|+.+...| .-.+-+++.-.-++..+.. ..+...|...+...
T Consensus 85 llrv~~L~tgk~irswKa~He~P-----------------vi~ma~~~~g~LlAtggaD----~~v~VWdi~~~~~t--- 140 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIRSWKAIHEAP-----------------VITMAFDPTGTLLATGGAD----GRVKVWDIKNGYCT--- 140 (775)
T ss_pred eEEEEEcccchHhHhHhhccCCC-----------------eEEEEEcCCCceEEecccc----ceEEEEEeeCCEEE---
Q ss_pred CCCCCCCCCCceEEEEEeCCeEEE---EEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCC
Q 040444 250 QPNYGAREKDFVLDVGALEGHMCL---MCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGD 326 (409)
Q Consensus 250 lP~~~~~~~~~~~~L~~~~G~L~~---~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~ 326 (409)
......+-.+....+++..-. +....+..+.+|-+.+ +.. .+.-+.........+++.. ++.
T Consensus 141 ---h~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~---~~t-------cl~~~~~H~S~vtsL~~~~--d~~ 205 (775)
T KOG0319|consen 141 ---HSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLND---KRT-------CLHTMILHKSAVTSLAFSE--DSL 205 (775)
T ss_pred ---EEecCCCceEEEEEeCCccchhheeecCCCceEEEEEccc---Cch-------HHHHHHhhhhheeeeeecc--CCc
Q ss_pred EEEEEEcCcEEEEEECCCCcEEEEEEeCCCCceeEeEEEec------cccCCCCCCchhhhhhHHHHHhhhhccccccc
Q 040444 327 KVLLEVNGEKLVWYDWKRKKLKTVKIDGGPDSFVACICVES------LIPLDNGSHGIILKKLQEQKEKKTQCRKKRDD 399 (409)
Q Consensus 327 ~ill~~~~~~l~~yd~~~~~~~~v~~~~~~~~~~~~~y~eS------lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (409)
.++-...+.-+..||+ .+.+....-..........|..+ ....+.++.+ .-+.++.....+..+++.
T Consensus 206 ~~ls~~RDkvi~vwd~--~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g----~~~~~d~es~~~~~~~~~ 278 (775)
T KOG0319|consen 206 ELLSVGRDKVIIVWDL--VQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSG----VVQYWDSESGKCVYKQRQ 278 (775)
T ss_pred eEEEeccCcEEEEeeh--hhhhhhheechhhheeeEEEechhcCCcceEEEEecCCc----eEEEEecccchhhhhhcc
No 100
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=27.16 E-value=2.9e+02 Score=21.13 Aligned_cols=41 Identities=12% Similarity=0.127 Sum_probs=30.5
Q ss_pred ccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEE
Q 040444 106 QDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQ 158 (409)
Q Consensus 106 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~ 158 (409)
-.+++.+|.+++|...- . ....+.+..|+..+.|.++....
T Consensus 9 a~v~~~~~~~~~W~~~~--~----------~~g~v~~~~d~~~~~y~i~~~~~ 49 (104)
T cd00837 9 AQVYTADPSTGKWVPAS--G----------GTGAVSLVKDSTRNTYRIRGVDI 49 (104)
T ss_pred EEEEEECCCCCceEECC--C----------CeEEEEEEEECCCCEEEEEEEec
Confidence 35888999999998742 1 34567788898888888887753
No 101
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=26.36 E-value=1.4e+02 Score=29.94 Aligned_cols=58 Identities=19% Similarity=0.218 Sum_probs=39.8
Q ss_pred CCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEc-CcEEEEEECCCCcEE
Q 040444 279 LVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVN-GEKLVWYDWKRKKLK 348 (409)
Q Consensus 279 ~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~-~~~l~~yd~~~~~~~ 348 (409)
...+.+|-.+.-...-.|.+.|.-+- +.++|.+ -.+.|++..+ +.+|+.||..+++..
T Consensus 186 ~G~VtlwDv~g~sp~~~~~~~HsAP~----------~gicfsp--sne~l~vsVG~Dkki~~yD~~s~~s~ 244 (673)
T KOG4378|consen 186 KGAVTLWDVQGMSPIFHASEAHSAPC----------RGICFSP--SNEALLVSVGYDKKINIYDIRSQAST 244 (673)
T ss_pred CCeEEEEeccCCCcccchhhhccCCc----------CcceecC--CccceEEEecccceEEEeeccccccc
Confidence 34899998875443457888876553 4577877 4455665543 567999999987753
No 102
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=26.31 E-value=7.7e+02 Score=25.79 Aligned_cols=132 Identities=14% Similarity=0.195 Sum_probs=0.0
Q ss_pred EEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcceeee--cCCCCCCCCCCceEE
Q 040444 186 TRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLL--PQPNYGAREKDFVLD 263 (409)
Q Consensus 186 r~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i--~lP~~~~~~~~~~~~ 263 (409)
+.++++| ........-....++..-.++..... .+..|+++++++..+ -.|. +....-..+.
T Consensus 419 ~~v~~~~----------~~~~~a~~i~ftid~~k~~~~s~~~~-----~le~~el~~ps~kel~~~~~~-~~~~~I~~l~ 482 (691)
T KOG2048|consen 419 INVDDVP----------LALLDASAISFTIDKNKLFLVSKNIF-----SLEEFELETPSFKELKSIQSQ-AKCPSISRLV 482 (691)
T ss_pred EEeccch----------hhhccceeeEEEecCceEEEEecccc-----eeEEEEecCcchhhhhccccc-cCCCcceeEE
Q ss_pred EEEeCCeEEEEEecCCCeEEEEEEeecCCCCceeE-EEEeecccccCCcceeeeEEEE-eecCCCEEEEEEcCcEEEEEE
Q 040444 264 VGALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSK-MFSIDRCRSISSFRFLRPLICS-NEDGGDKVLLEVNGEKLVWYD 341 (409)
Q Consensus 264 L~~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~-~~~I~~~~~~~~~~~~~p~~~~-~~~~~~~ill~~~~~~l~~yd 341 (409)
....+..++++...+ .+.+|-++. ....|.+ ...++. ...++. . +.+.|.+.+.+.+++-||
T Consensus 483 ~SsdG~yiaa~~t~g--~I~v~nl~~--~~~~~l~~rln~~v----------Ta~~~~~~--~~~~lvvats~nQv~efd 546 (691)
T KOG2048|consen 483 VSSDGNYIAAISTRG--QIFVYNLET--LESHLLKVRLNIDV----------TAAAFSPF--VRNRLVVATSNNQVFEFD 546 (691)
T ss_pred EcCCCCEEEEEeccc--eEEEEEccc--ceeecchhccCcce----------eeeecccc--ccCcEEEEecCCeEEEEe
Q ss_pred CCCCcEEE
Q 040444 342 WKRKKLKT 349 (409)
Q Consensus 342 ~~~~~~~~ 349 (409)
++.+++.+
T Consensus 547 i~~~~l~~ 554 (691)
T KOG2048|consen 547 IEARNLTR 554 (691)
T ss_pred cchhhhhh
No 103
>PRK04043 tolB translocation protein TolB; Provisional
Probab=26.16 E-value=6.4e+02 Score=24.83 Aligned_cols=102 Identities=9% Similarity=0.136 Sum_probs=58.9
Q ss_pred EEEEEECCCcceeeecCCCCCCCCCCceEEEEEeCC-eEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcc
Q 040444 234 LIVAFDLGLEEFRLLPQPNYGAREKDFVLDVGALEG-HMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFR 312 (409)
Q Consensus 234 ~Il~fDl~~e~~~~i~lP~~~~~~~~~~~~L~~~~G-~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~ 312 (409)
.|..+|+.+.+-+.+.... +. ...... .-+| +|.+.... ...-+||+++-.+ ..+.++..-+. .
T Consensus 214 ~Iyv~dl~tg~~~~lt~~~-g~---~~~~~~-SPDG~~la~~~~~-~g~~~Iy~~dl~~--g~~~~LT~~~~-------~ 278 (419)
T PRK04043 214 TLYKYNLYTGKKEKIASSQ-GM---LVVSDV-SKDGSKLLLTMAP-KGQPDIYLYDTNT--KTLTQITNYPG-------I 278 (419)
T ss_pred EEEEEECCCCcEEEEecCC-Cc---EEeeEE-CCCCCEEEEEEcc-CCCcEEEEEECCC--CcEEEcccCCC-------c
Confidence 5999999887766653322 11 111122 2355 55555443 3378999998533 33554332111 0
Q ss_pred eeeeEEEEeecCCCEEEEEEcC---cEEEEEECCCCcEEEEEEe
Q 040444 313 FLRPLICSNEDGGDKVLLEVNG---EKLVWYDWKRKKLKTVKID 353 (409)
Q Consensus 313 ~~~p~~~~~~~~~~~ill~~~~---~~l~~yd~~~~~~~~v~~~ 353 (409)
...| .+.+ ||..|++..+. ..|+.+|+.+++.+++...
T Consensus 279 d~~p-~~SP--DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~ 319 (419)
T PRK04043 279 DVNG-NFVE--DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH 319 (419)
T ss_pred cCcc-EECC--CCCEEEEEECCCCCceEEEEECCCCCeEeCccC
Confidence 1122 4666 78888887542 3699999999998777543
No 104
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=25.69 E-value=5.5e+02 Score=23.90 Aligned_cols=106 Identities=19% Similarity=0.169 Sum_probs=61.0
Q ss_pred cEEEEEECCCc-----ceeee---cCCCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeec
Q 040444 233 NLIVAFDLGLE-----EFRLL---PQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDR 304 (409)
Q Consensus 233 ~~Il~fDl~~e-----~~~~i---~lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~ 304 (409)
..|+.|++.+. ++..+ ..+. .-..+..++|+|.++.. ..+.|+.+++. ..+.+....+.
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g-------~V~ai~~~~~~lv~~~g---~~l~v~~l~~~---~~l~~~~~~~~ 128 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKG-------PVTAICSFNGRLVVAVG---NKLYVYDLDNS---KTLLKKAFYDS 128 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS--------EEEEEEETTEEEEEET---TEEEEEEEETT---SSEEEEEEE-B
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecC-------cceEhhhhCCEEEEeec---CEEEEEEccCc---ccchhhheecc
Confidence 45777777764 33332 2222 22367888999655542 48999999963 24777776655
Q ss_pred ccccCCcceeeeEEEEeecCCCEEEEEEcCc--EEEEEECCCCcEEEEEEeCCCCceeE
Q 040444 305 CRSISSFRFLRPLICSNEDGGDKVLLEVNGE--KLVWYDWKRKKLKTVKIDGGPDSFVA 361 (409)
Q Consensus 305 ~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~--~l~~yd~~~~~~~~v~~~~~~~~~~~ 361 (409)
.. ....+.. .++.|++..... .++.|+.+.+++..+.-...+.+..+
T Consensus 129 ~~--------~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~ 177 (321)
T PF03178_consen 129 PF--------YITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTA 177 (321)
T ss_dssp SS--------SEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEE
T ss_pred eE--------EEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEE
Confidence 32 2333333 347777775433 36677887888888765544444333
No 105
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=25.11 E-value=5.1e+02 Score=26.61 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=24.6
Q ss_pred EEecccceEEEeeCCccEEEEcccccceec
Q 040444 91 VFGSCNGLLALSNSDQDIALFNPATRQLFK 120 (409)
Q Consensus 91 ~~~sc~GLl~l~~~~~~~~V~NP~T~~~~~ 120 (409)
-+..|||||++...++.+-.|+|-+++...
T Consensus 182 ~in~~hgLla~Gt~~g~VEfwDpR~ksrv~ 211 (703)
T KOG2321|consen 182 SINEEHGLLACGTEDGVVEFWDPRDKSRVG 211 (703)
T ss_pred eecCccceEEecccCceEEEecchhhhhhe
Confidence 346789999998778889999999987654
No 106
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=24.30 E-value=3e+02 Score=27.25 Aligned_cols=75 Identities=15% Similarity=0.232 Sum_probs=45.4
Q ss_pred CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcC---cEEEEEECCC
Q 040444 268 EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNG---EKLVWYDWKR 344 (409)
Q Consensus 268 ~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~---~~l~~yd~~~ 344 (409)
+|+-.+++.......+||+++-.+. ..+.+ ....+ ....| .+.+ +|..|++..+. ..++.||+++
T Consensus 248 DG~~l~f~~~rdg~~~iy~~dl~~~-~~~~L------t~~~g--i~~~P-s~sp--dG~~ivf~Sdr~G~p~I~~~~~~g 315 (425)
T COG0823 248 DGSKLAFSSSRDGSPDIYLMDLDGK-NLPRL------TNGFG--INTSP-SWSP--DGSKIVFTSDRGGRPQIYLYDLEG 315 (425)
T ss_pred CCCEEEEEECCCCCccEEEEcCCCC-cceec------ccCCc--cccCc-cCCC--CCCEEEEEeCCCCCcceEEECCCC
Confidence 4444444444446999999998663 32221 11111 01123 4456 88888887653 3599999999
Q ss_pred CcEEEEEEeC
Q 040444 345 KKLKTVKIDG 354 (409)
Q Consensus 345 ~~~~~v~~~~ 354 (409)
+..+++...+
T Consensus 316 ~~~~riT~~~ 325 (425)
T COG0823 316 SQVTRLTFSG 325 (425)
T ss_pred CceeEeeccC
Confidence 9998886543
No 107
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=23.68 E-value=7.6e+02 Score=25.10 Aligned_cols=125 Identities=10% Similarity=0.071 Sum_probs=66.6
Q ss_pred ecCCCCEEEEEEEEeecCCCCCCCcceecEEEEEEcCCCceEEcc--ccCcccccceeeeeeeeecccceEEECCeEEEE
Q 040444 145 DLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRSWTRVK--KLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWV 222 (409)
Q Consensus 145 d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~vyss~t~~Wr~~~--~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl 222 (409)
...++.-|.|.++.... ..--.+...++.|-+|.... ..++ +...-..++.++..+|-.
T Consensus 210 eKDs~~skmvvyGGM~G--------~RLgDLW~Ldl~Tl~W~kp~~~G~~P-----------lPRSLHsa~~IGnKMyvf 270 (830)
T KOG4152|consen 210 EKDSKKSKMVVYGGMSG--------CRLGDLWTLDLDTLTWNKPSLSGVAP-----------LPRSLHSATTIGNKMYVF 270 (830)
T ss_pred eccCCcceEEEEccccc--------ccccceeEEecceeecccccccCCCC-----------CCcccccceeecceeEEe
Confidence 44455667776654332 01123456788888998754 2221 111234556677777754
Q ss_pred eec----CC---------CCCCccEEEEEECCCcceeeecCCCCCCCCCCc----eEEEEEeCCeEEEEEecCC------
Q 040444 223 SPR----RP---------EFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDF----VLDVGALEGHMCLMCNYDL------ 279 (409)
Q Consensus 223 ~~~----~~---------~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~----~~~L~~~~G~L~~~~~~~~------ 279 (409)
..- .. +--....+-.+++.+++|..+.+-..+. +.-. ...-+..+.+|++.+..+.
T Consensus 271 GGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed-~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwn 349 (830)
T KOG4152|consen 271 GGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLED-NTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWN 349 (830)
T ss_pred cceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccc-cccccccccceeEEeccEEEEEeccchhhHhhc
Confidence 321 10 0011235788899999998764422110 0000 1135677888888876531
Q ss_pred ---CeEEEEEEee
Q 040444 280 ---VKVDVWMMKE 289 (409)
Q Consensus 280 ---~~~~IW~l~~ 289 (409)
..-++|.|+.
T Consensus 350 nQVCCkDlWyLdT 362 (830)
T KOG4152|consen 350 NQVCCKDLWYLDT 362 (830)
T ss_pred cccchhhhhhhcc
Confidence 2567888874
No 108
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=23.39 E-value=1.1e+03 Score=26.69 Aligned_cols=69 Identities=16% Similarity=0.158 Sum_probs=41.1
Q ss_pred EEEEEECCCcceeeecCCCCCCCCCCc-eEEEEEeCCeEEEEEecCCC-eEEEEEEeecCCCCceeEEEEeecccc
Q 040444 234 LIVAFDLGLEEFRLLPQPNYGAREKDF-VLDVGALEGHMCLMCNYDLV-KVDVWMMKEYGLKESWSKMFSIDRCRS 307 (409)
Q Consensus 234 ~Il~fDl~~e~~~~i~lP~~~~~~~~~-~~~L~~~~G~L~~~~~~~~~-~~~IW~l~~~~~~~~W~~~~~I~~~~~ 307 (409)
.|+-|.-...+-..+.+|. ..+...+ .+...+-..-|+++...... .+.+|..+.|. |-++..+..+..
T Consensus 267 ~IvffErNGL~hg~f~l~~-p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh----WYLKq~l~~~~~ 337 (1265)
T KOG1920|consen 267 DIVFFERNGLRHGEFVLPF-PLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH----WYLKQELQFSQK 337 (1265)
T ss_pred cEEEEecCCccccccccCC-cccccchheeeecCCCCceeeeecccccceEEEEEecCeE----EEEEEEEecccc
Confidence 4888887776666655554 2211212 12222223445555554443 59999999764 999998887643
No 109
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=23.27 E-value=6.8e+02 Score=24.10 Aligned_cols=117 Identities=12% Similarity=0.169 Sum_probs=67.5
Q ss_pred ECCeEEEEeecCCCCCCccEEEEEECCCcc------eeeecCCCC--CCCCCCceE-EEEEeCCeEEEEEec-C-----C
Q 040444 215 VNGVVHWVSPRRPEFGIGNLIVAFDLGLEE------FRLLPQPNY--GAREKDFVL-DVGALEGHMCLMCNY-D-----L 279 (409)
Q Consensus 215 ~~G~lywl~~~~~~~~~~~~Il~fDl~~e~------~~~i~lP~~--~~~~~~~~~-~L~~~~G~L~~~~~~-~-----~ 279 (409)
.+|..+|.+... .|..+|+++.. |..+..-.. +..-.++.. .+..-+++|+++... . .
T Consensus 204 ~dg~~~~vs~eG-------~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~ 276 (352)
T TIGR02658 204 KSGRLVWPTYTG-------KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKT 276 (352)
T ss_pred CCCcEEEEecCC-------eEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccC
Confidence 368999998773 39999976543 332211110 111112222 222335677774321 1 1
Q ss_pred CeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCC-EEEEEE-cCcEEEEEECCCCcE-EEE
Q 040444 280 VKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGD-KVLLEV-NGEKLVWYDWKRKKL-KTV 350 (409)
Q Consensus 280 ~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~-~ill~~-~~~~l~~yd~~~~~~-~~v 350 (409)
..=+||+++- ..+..+.+|.... ....+++.+ ++. .++... ..+.+..+|..+.+. +.+
T Consensus 277 ~~~~V~ViD~----~t~kvi~~i~vG~------~~~~iavS~--Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 277 ASRFLFVVDA----KTGKRLRKIELGH------EIDSINVSQ--DAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCCEEEEEEC----CCCeEEEEEeCCC------ceeeEEECC--CCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 2348899884 5688888888743 234577877 777 444433 235599999999864 555
No 110
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=23.01 E-value=5.3e+02 Score=22.76 Aligned_cols=110 Identities=14% Similarity=0.176 Sum_probs=62.0
Q ss_pred CCeEEEEeecCCCCCCccEEEEEECCCcceeeecCCCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEEEeecCCCCc
Q 040444 216 NGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLKES 295 (409)
Q Consensus 216 ~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~ 295 (409)
+|.|||...... .|..+|..+.+...+.+|. .. .+.+..-+|+|+++... .+.+. +.. ...
T Consensus 11 ~g~l~~~D~~~~------~i~~~~~~~~~~~~~~~~~-~~-----G~~~~~~~g~l~v~~~~---~~~~~---d~~-~g~ 71 (246)
T PF08450_consen 11 DGRLYWVDIPGG------RIYRVDPDTGEVEVIDLPG-PN-----GMAFDRPDGRLYVADSG---GIAVV---DPD-TGK 71 (246)
T ss_dssp TTEEEEEETTTT------EEEEEETTTTEEEEEESSS-EE-----EEEEECTTSEEEEEETT---CEEEE---ETT-TTE
T ss_pred CCEEEEEEcCCC------EEEEEECCCCeEEEEecCC-Cc-----eEEEEccCCEEEEEEcC---ceEEE---ecC-CCc
Confidence 699999865543 5999999999998888876 21 11122246777666543 22222 322 345
Q ss_pred eeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEc-C--------cEEEEEECCCCcEEEE
Q 040444 296 WSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVN-G--------EKLVWYDWKRKKLKTV 350 (409)
Q Consensus 296 W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~-~--------~~l~~yd~~~~~~~~v 350 (409)
++.......... ......-+++.+ +|+ +++... . +.++.++.. ++++.+
T Consensus 72 ~~~~~~~~~~~~--~~~~~ND~~vd~--~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 72 VTVLADLPDGGV--PFNRPNDVAVDP--DGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp EEEEEEEETTCS--CTEEEEEEEE-T--TS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred EEEEeeccCCCc--ccCCCceEEEcC--CCC-EEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 766666632110 111223355555 655 666532 1 458899998 665554
No 111
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=22.96 E-value=5.8e+02 Score=23.26 Aligned_cols=66 Identities=11% Similarity=0.138 Sum_probs=38.7
Q ss_pred eEEEEEEeecC----CCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcEEEE
Q 040444 281 KVDVWMMKEYG----LKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKLKTV 350 (409)
Q Consensus 281 ~~~IW~l~~~~----~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~~~v 350 (409)
.+.=|...|.. .+..|..+--+... ....+....+-+.+ ..+.|++...+..++..|++++++++.
T Consensus 82 ~V~gw~W~E~~es~~~K~lwe~~~P~~~~--~~evPeINam~ldP--~enSi~~AgGD~~~y~~dlE~G~i~r~ 151 (325)
T KOG0649|consen 82 LVYGWEWNEEEESLATKRLWEVKIPMQVD--AVEVPEINAMWLDP--SENSILFAGGDGVIYQVDLEDGRIQRE 151 (325)
T ss_pred eEEEeeehhhhhhccchhhhhhcCccccC--cccCCccceeEecc--CCCcEEEecCCeEEEEEEecCCEEEEE
Confidence 66667765432 23567664322211 00112223344444 556788877778899999999999874
No 112
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=22.89 E-value=5.8e+02 Score=23.17 Aligned_cols=89 Identities=12% Similarity=0.108 Sum_probs=53.2
Q ss_pred CCceEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcc-eeeecCCCCCCCCCC-
Q 040444 182 NRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEE-FRLLPQPNYGAREKD- 259 (409)
Q Consensus 182 t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~-~~~i~lP~~~~~~~~- 259 (409)
.+.|...-.+| +.+ ....-|..||++|....... .|+.||+.++. .....+|. ....+.
T Consensus 55 ~~~~~~~~~lp----------~~~--~gTg~VVynGs~yynk~~t~------~ivky~l~~~~~~~~~~lp~-a~y~~~~ 115 (249)
T KOG3545|consen 55 RGRKAEKYRLP----------YSW--DGTGHVVYNGSLYYNKAGTR------NIIKYDLETRTVAGSAALPY-AGYHNPS 115 (249)
T ss_pred ccCcceEEeCC----------CCc--cccceEEEcceEEeeccCCc------ceEEEEeecceeeeeeeccc-cccCCCc
Confidence 35566665666 332 24456889999998764433 49999999853 34456665 221111
Q ss_pred -------ceEEEEEeCCeEEEEEecCCC--eEEEEEEee
Q 040444 260 -------FVLDVGALEGHMCLMCNYDLV--KVDVWMMKE 289 (409)
Q Consensus 260 -------~~~~L~~~~G~L~~~~~~~~~--~~~IW~l~~ 289 (409)
-.+.+++.+..|.++....++ .+.|-.|+.
T Consensus 116 ~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv~skLdp 154 (249)
T KOG3545|consen 116 PYYWGGHSDIDLAVDENGLWVIYATPENAGTIVLSKLDP 154 (249)
T ss_pred ccccCCCccccceecccceeEEecccccCCcEEeeccCH
Confidence 134677777777776654332 555566654
No 113
>PRK04792 tolB translocation protein TolB; Provisional
Probab=22.41 E-value=7.7e+02 Score=24.43 Aligned_cols=188 Identities=11% Similarity=-0.024 Sum_probs=92.2
Q ss_pred ccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEEEEEcCCCce
Q 040444 106 QDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRSW 185 (409)
Q Consensus 106 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~vyss~t~~W 185 (409)
..++++|..|++...|...+.. .....+.|..+ + ++..... .....+.+++..++..
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~-----------~~~~~wSPDG~-~-La~~~~~----------~g~~~Iy~~dl~tg~~ 298 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGI-----------NGAPRFSPDGK-K-LALVLSK----------DGQPEIYVVDIATKAL 298 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCC-----------cCCeeECCCCC-E-EEEEEeC----------CCCeEEEEEECCCCCe
Confidence 4799999999887666432210 01233444332 2 2222111 1134567778888887
Q ss_pred EEccccCcccccceeeeeeeeecccceEEECCe-EEEEeecCCCCCCccEEEEEECCCcceeeecCCCCCCCCCCceEEE
Q 040444 186 TRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGV-VHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDFVLDV 264 (409)
Q Consensus 186 r~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~~L 264 (409)
+.+...... .......-+|. +++...... ...|..+|+.+.+...+.... .. ......
T Consensus 299 ~~lt~~~~~-------------~~~p~wSpDG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~~g-~~---~~~~~~ 357 (448)
T PRK04792 299 TRITRHRAI-------------DTEPSWHPDGKSLIFTSERGG----KPQIYRVNLASGKVSRLTFEG-EQ---NLGGSI 357 (448)
T ss_pred EECccCCCC-------------ccceEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEEecCC-CC---CcCeeE
Confidence 776532200 01111222453 444332221 235999999888777664322 11 111122
Q ss_pred EEeCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcC---cEEEEEE
Q 040444 265 GALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNG---EKLVWYD 341 (409)
Q Consensus 265 ~~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~---~~l~~yd 341 (409)
..-+..|++.... ....+||+++-.+ ..... +.... . ...| .+.+ +|..|++.... ..++.+|
T Consensus 358 SpDG~~l~~~~~~-~g~~~I~~~dl~~--g~~~~---lt~~~----~-d~~p-s~sp--dG~~I~~~~~~~g~~~l~~~~ 423 (448)
T PRK04792 358 TPDGRSMIMVNRT-NGKFNIARQDLET--GAMQV---LTSTR----L-DESP-SVAP--NGTMVIYSTTYQGKQVLAAVS 423 (448)
T ss_pred CCCCCEEEEEEec-CCceEEEEEECCC--CCeEE---ccCCC----C-CCCc-eECC--CCCEEEEEEecCCceEEEEEE
Confidence 2223344444433 3478899988433 22222 11111 0 1223 5666 77877775432 2477788
Q ss_pred CCCCcEEEEE
Q 040444 342 WKRKKLKTVK 351 (409)
Q Consensus 342 ~~~~~~~~v~ 351 (409)
...+..+.+.
T Consensus 424 ~~G~~~~~l~ 433 (448)
T PRK04792 424 IDGRFKARLP 433 (448)
T ss_pred CCCCceEECc
Confidence 8766655553
No 114
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=22.38 E-value=6.3e+02 Score=23.43 Aligned_cols=74 Identities=14% Similarity=0.138 Sum_probs=43.6
Q ss_pred CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEc-CcEEEEEE--CCC
Q 040444 268 EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVN-GEKLVWYD--WKR 344 (409)
Q Consensus 268 ~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~-~~~l~~yd--~~~ 344 (409)
+|+..++.......+.+|.++..+ ..+.....++... ..+-+.+.+ +|..++.... ++.+..|+ ..+
T Consensus 238 dg~~lyv~~~~~~~I~v~~i~~~~--~~~~~~~~~~~~~------~p~~~~~~~--dg~~l~va~~~~~~v~v~~~~~~~ 307 (330)
T PRK11028 238 DGRHLYACDRTASLISVFSVSEDG--SVLSFEGHQPTET------QPRGFNIDH--SGKYLIAAGQKSHHISVYEIDGET 307 (330)
T ss_pred CCCEEEEecCCCCeEEEEEEeCCC--CeEEEeEEEeccc------cCCceEECC--CCCEEEEEEccCCcEEEEEEcCCC
Confidence 555444444444589999987643 3466666555421 123356666 7777776543 44566664 466
Q ss_pred CcEEEEE
Q 040444 345 KKLKTVK 351 (409)
Q Consensus 345 ~~~~~v~ 351 (409)
+.++.+.
T Consensus 308 g~l~~~~ 314 (330)
T PRK11028 308 GLLTELG 314 (330)
T ss_pred CcEEEcc
Confidence 7776653
No 115
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=22.32 E-value=3e+02 Score=21.65 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=27.1
Q ss_pred cEEEEEECCCCcEEEEEEe--C--CCCceeEeEEEeccccCCC
Q 040444 335 EKLVWYDWKRKKLKTVKID--G--GPDSFVACICVESLIPLDN 373 (409)
Q Consensus 335 ~~l~~yd~~~~~~~~v~~~--~--~~~~~~~~~y~eSlv~~~~ 373 (409)
..++.+|+++++++.+..+ . .........|..+|.-+..
T Consensus 20 ~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~ 62 (129)
T PF08268_consen 20 NVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSY 62 (129)
T ss_pred cEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEe
Confidence 5699999999999999875 1 1223345667777766544
No 116
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=22.16 E-value=2.5e+02 Score=25.25 Aligned_cols=55 Identities=24% Similarity=0.242 Sum_probs=37.3
Q ss_pred cccceEEEeeCCccEEEEcccccceecc--CCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEE
Q 040444 94 SCNGLLALSNSDQDIALFNPATRQLFKL--PVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVR 155 (409)
Q Consensus 94 sc~GLl~l~~~~~~~~V~NP~T~~~~~L--P~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~ 155 (409)
..+|.|.-.....++|..||.|+.-..+ .+..... .-..+++-|+|..+.-+||.
T Consensus 36 pa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al-------~g~~~gvDFNP~aDRlRvvs 92 (236)
T PF14339_consen 36 PANGQLYGLGSTGRLYTINPATGAATPVGASPLTVAL-------SGTAFGVDFNPAADRLRVVS 92 (236)
T ss_pred cCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccc-------cCceEEEecCcccCcEEEEc
Confidence 4577775555677899999999997777 2222111 12267788888888777775
No 117
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=22.08 E-value=3.5e+02 Score=26.67 Aligned_cols=63 Identities=13% Similarity=0.180 Sum_probs=0.0
Q ss_pred CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCC
Q 040444 268 EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKR 344 (409)
Q Consensus 268 ~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~ 344 (409)
+|.|+.....+. .+.||-+++.. ....+.+......-+.|.+ ||--+....++..+..||++.
T Consensus 358 DgLifgtgt~d~-~vkiwdlks~~-----------~~a~Fpght~~vk~i~FsE--NGY~Lat~add~~V~lwDLRK 420 (506)
T KOG0289|consen 358 DGLIFGTGTPDG-VVKIWDLKSQT-----------NVAKFPGHTGPVKAISFSE--NGYWLATAADDGSVKLWDLRK 420 (506)
T ss_pred CceEEeccCCCc-eEEEEEcCCcc-----------ccccCCCCCCceeEEEecc--CceEEEEEecCCeEEEEEehh
No 118
>PF15408 PH_7: Pleckstrin homology domain
Probab=21.97 E-value=29 Score=25.51 Aligned_cols=23 Identities=9% Similarity=0.286 Sum_probs=18.1
Q ss_pred ceeEEEecccchhhhcCChhHHH
Q 040444 20 TLLRYRCLSRPLCSIIDDPDFIK 42 (409)
Q Consensus 20 sL~R~r~VCK~W~~li~~~~F~~ 42 (409)
-.+-.+-|||+|-....+|+|.-
T Consensus 78 ~FA~S~~~~~~Wi~~mN~~s~~~ 100 (104)
T PF15408_consen 78 CFASSKKVCQSWIQVMNSPSFRV 100 (104)
T ss_pred hhhhHHHHHHHHHHHhcChhhhh
Confidence 34455679999999999999853
No 119
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=21.10 E-value=5.3e+02 Score=22.08 Aligned_cols=94 Identities=13% Similarity=0.140 Sum_probs=47.7
Q ss_pred EEEEEECCCcce-eeecCCCCCCCCCCceEEEEEeC-CeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCc
Q 040444 234 LIVAFDLGLEEF-RLLPQPNYGAREKDFVLDVGALE-GHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSF 311 (409)
Q Consensus 234 ~Il~fDl~~e~~-~~i~lP~~~~~~~~~~~~L~~~~-G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~ 311 (409)
.|..+|+.+.+. ..+.... ... ..+.... +.+.++.. ....+.+|-+... .....+... .
T Consensus 116 ~i~~~~~~~~~~~~~~~~~~-----~~i-~~~~~~~~~~~l~~~~-~~~~i~i~d~~~~------~~~~~~~~~-----~ 177 (289)
T cd00200 116 TIKVWDVETGKCLTTLRGHT-----DWV-NSVAFSPDGTFVASSS-QDGTIKLWDLRTG------KCVATLTGH-----T 177 (289)
T ss_pred eEEEEECCCcEEEEEeccCC-----CcE-EEEEEcCcCCEEEEEc-CCCcEEEEEcccc------ccceeEecC-----c
Confidence 488899885443 2233111 111 1222222 44444333 2348889987632 122222211 1
Q ss_pred ceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcE
Q 040444 312 RFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKL 347 (409)
Q Consensus 312 ~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~ 347 (409)
....-+.+.+ ++..+++...++.+..||+++++.
T Consensus 178 ~~i~~~~~~~--~~~~l~~~~~~~~i~i~d~~~~~~ 211 (289)
T cd00200 178 GEVNSVAFSP--DGEKLLSSSSDGTIKLWDLSTGKC 211 (289)
T ss_pred cccceEEECC--CcCEEEEecCCCcEEEEECCCCce
Confidence 1233455655 666777766667799999987554
No 120
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=20.63 E-value=5.1e+02 Score=26.47 Aligned_cols=119 Identities=13% Similarity=0.146 Sum_probs=0.0
Q ss_pred cccceEEEee-CCccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCccee
Q 040444 94 SCNGLLALSN-SDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVE 172 (409)
Q Consensus 94 sc~GLl~l~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~ 172 (409)
..+|-+++.. .+.++.||||. +.+.|-..... .....+..-|-|-+++=.|+... .+
T Consensus 59 n~dG~lL~SGSDD~r~ivWd~~--~~KllhsI~Tg-------HtaNIFsvKFvP~tnnriv~sgA-------------gD 116 (758)
T KOG1310|consen 59 NADGELLASGSDDTRLIVWDPF--EYKLLHSISTG-------HTANIFSVKFVPYTNNRIVLSGA-------------GD 116 (758)
T ss_pred cCCCCEEeecCCcceEEeecch--hcceeeeeecc-------cccceeEEeeeccCCCeEEEecc-------------Cc
Q ss_pred cEEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEECC-eEEEEeecCCCCCCccEEEEEECCC
Q 040444 173 YEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNG-VVHWVSPRRPEFGIGNLIVAFDLGL 242 (409)
Q Consensus 173 ~~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G-~lywl~~~~~~~~~~~~Il~fDl~~ 242 (409)
..+.+|+...-+=+..+.-+......|. ++......-++.-+| ..+|-+..+.. |.-+|+..
T Consensus 117 k~i~lfdl~~~~~~~~d~~~~~~~~~~~--cht~rVKria~~p~~PhtfwsasEDGt------irQyDiRE 179 (758)
T KOG1310|consen 117 KLIKLFDLDSSKEGGMDHGMEETTRCWS--CHTDRVKRIATAPNGPHTFWSASEDGT------IRQYDIRE 179 (758)
T ss_pred ceEEEEecccccccccccCccchhhhhh--hhhhhhhheecCCCCCceEEEecCCcc------eeeecccC
No 121
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=20.54 E-value=3.3e+02 Score=25.24 Aligned_cols=68 Identities=10% Similarity=0.096 Sum_probs=45.1
Q ss_pred eecEEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcceeeecC
Q 040444 171 VEYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQ 250 (409)
Q Consensus 171 ~~~~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~l 250 (409)
.+..+.+|+..+.+|.....--.+.. ..+......-+++.|.|-.-... ...+..||+.+.+|..+..
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G~V------~~l~~~~~~~Llv~G~ft~~~~~------~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISGTV------TDLQWASNNQLLVGGNFTLNGTN------SSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceEEE------EEEEEecCCEEEEEEeeEECCCC------ceeEEEEecCCCeeeecCC
Confidence 36788999999999998763211110 22333345668888876643311 2359999999999987654
No 122
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=20.39 E-value=6.5e+02 Score=22.83 Aligned_cols=183 Identities=16% Similarity=0.164 Sum_probs=92.3
Q ss_pred cceEEEee-CCccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecE
Q 040444 96 NGLLALSN-SDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYE 174 (409)
Q Consensus 96 ~GLl~l~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~ 174 (409)
+|=-|+.. .++.+-+|||..+...+-=.... ....-....+|.+ |+-. ...+..
T Consensus 28 dGnY~ltcGsdrtvrLWNp~rg~liktYsghG--------~EVlD~~~s~Dns----kf~s-------------~GgDk~ 82 (307)
T KOG0316|consen 28 DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHG--------HEVLDAALSSDNS----KFAS-------------CGGDKA 82 (307)
T ss_pred CCCEEEEcCCCceEEeecccccceeeeecCCC--------ceeeecccccccc----cccc-------------CCCCce
Confidence 55555554 46788999999887554211100 0111122333322 1111 113456
Q ss_pred EEEEEcCCC----ceEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcceeeecC
Q 040444 175 VKVFSLKNR----SWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQ 250 (409)
Q Consensus 175 ~~vyss~t~----~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~l 250 (409)
+.+++..|+ .||-...-- .........+|.+.|.+= ..+-.+|-.+..+..|+.
T Consensus 83 v~vwDV~TGkv~Rr~rgH~aqV----------NtV~fNeesSVv~SgsfD------------~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 83 VQVWDVNTGKVDRRFRGHLAQV----------NTVRFNEESSVVASGSFD------------SSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred EEEEEcccCeeeeeccccccee----------eEEEecCcceEEEecccc------------ceeEEEEcccCCCCccch
Confidence 788888885 455432111 123334556677777642 238889999988887766
Q ss_pred CCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCc--ceeeeEEEEeecCCCEE
Q 040444 251 PNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSF--RFLRPLICSNEDGGDKV 328 (409)
Q Consensus 251 P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~--~~~~p~~~~~~~~~~~i 328 (409)
-. .. .++. .-....+...+....+. .+...-+.. ......+ ....-+.+.+ +++..
T Consensus 141 ld-ea-~D~V--~Si~v~~heIvaGS~DG-tvRtydiR~---------------G~l~sDy~g~pit~vs~s~--d~nc~ 198 (307)
T KOG0316|consen 141 LD-EA-KDGV--SSIDVAEHEIVAGSVDG-TVRTYDIRK---------------GTLSSDYFGHPITSVSFSK--DGNCS 198 (307)
T ss_pred hh-hh-cCce--eEEEecccEEEeeccCC-cEEEEEeec---------------ceeehhhcCCcceeEEecC--CCCEE
Confidence 55 33 1221 22344455545444432 444333332 1111000 1123356666 77777
Q ss_pred EEEEcCcEEEEEECCCCcE
Q 040444 329 LLEVNGEKLVWYDWKRKKL 347 (409)
Q Consensus 329 ll~~~~~~l~~yd~~~~~~ 347 (409)
+...-+..|-..|-+|+++
T Consensus 199 La~~l~stlrLlDk~tGkl 217 (307)
T KOG0316|consen 199 LASSLDSTLRLLDKETGKL 217 (307)
T ss_pred EEeeccceeeecccchhHH
Confidence 7665555566777777664
Done!