Query 040444
Match_columns 409
No_of_seqs 223 out of 1637
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 13:33:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040444.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040444hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4asc_A Kelch repeat and BTB do 99.1 6.7E-08 2.3E-12 90.0 27.6 198 107-350 68-283 (315)
2 2woz_A Kelch repeat and BTB do 99.1 7.4E-08 2.5E-12 89.9 25.8 197 108-350 80-293 (318)
3 3ii7_A Kelch-like protein 7; p 99.0 8.7E-08 3E-12 88.8 24.0 210 94-351 53-279 (306)
4 1zgk_A Kelch-like ECH-associat 99.0 1E-07 3.4E-12 88.6 24.3 197 106-351 90-294 (308)
5 1fs1_A SKP2 F-BOX, cyclin A/CD 99.0 5.6E-11 1.9E-15 79.9 0.6 42 1-42 9-50 (53)
6 2e31_A FBS1, F-box only protei 99.0 5.3E-11 1.8E-15 108.5 0.6 48 1-48 51-99 (297)
7 2xn4_A Kelch-like protein 2; s 99.0 1.1E-07 3.9E-12 87.8 22.8 210 94-351 59-283 (302)
8 2vpj_A Kelch-like protein 12; 99.0 1.3E-07 4.6E-12 87.2 22.5 196 106-351 78-285 (301)
9 3ii7_A Kelch-like protein 7; p 98.8 2.3E-07 7.8E-12 85.9 18.4 198 105-351 23-232 (306)
10 2vpj_A Kelch-like protein 12; 98.8 8.7E-07 3E-11 81.7 21.4 196 106-351 31-238 (301)
11 4asc_A Kelch repeat and BTB do 98.8 2.2E-06 7.6E-11 79.6 23.3 204 106-351 13-228 (315)
12 3v7d_B Cell division control p 98.7 7.2E-06 2.5E-10 80.0 27.8 42 2-43 16-58 (464)
13 2ovr_B FBW7, F-BOX/WD repeat p 98.7 5.6E-06 1.9E-10 80.5 26.0 47 1-47 19-65 (445)
14 2xn4_A Kelch-like protein 2; s 98.7 9.4E-07 3.2E-11 81.6 19.3 197 106-351 30-236 (302)
15 1zgk_A Kelch-like ECH-associat 98.7 7.1E-07 2.4E-11 82.8 17.1 201 105-351 38-247 (308)
16 2uvk_A YJHT; unknown function, 98.6 3.6E-06 1.2E-10 79.6 20.4 220 94-351 17-301 (357)
17 1p22_A F-BOX/WD-repeat protein 98.6 2.1E-06 7.3E-11 83.3 18.8 45 2-46 12-60 (435)
18 2uvk_A YJHT; unknown function, 98.5 2E-05 6.9E-10 74.3 23.1 152 173-350 168-348 (357)
19 2woz_A Kelch repeat and BTB do 98.5 8.3E-06 2.8E-10 75.8 19.8 212 97-351 16-238 (318)
20 2zwa_A Leucine carboxyl methyl 98.2 5.2E-05 1.8E-09 78.4 18.1 212 95-352 396-643 (695)
21 3l2o_B F-box only protein 4; s 97.8 1.9E-06 6.4E-11 77.7 -1.6 47 2-48 6-52 (312)
22 1k3i_A Galactose oxidase precu 97.6 0.00084 2.9E-08 68.8 14.1 109 107-248 220-329 (656)
23 2zwa_A Leucine carboxyl methyl 97.5 0.0014 4.8E-08 67.6 14.6 161 172-352 411-591 (695)
24 1k3i_A Galactose oxidase precu 97.2 0.0028 9.5E-08 65.0 13.3 203 108-349 168-383 (656)
25 2ast_B S-phase kinase-associat 97.1 5.4E-05 1.9E-09 70.6 -0.7 40 1-40 9-48 (336)
26 2p1m_B Transport inhibitor res 96.4 0.00035 1.2E-08 70.4 -1.3 34 1-34 6-40 (594)
27 3ogk_B Coronatine-insensitive 95.7 0.0012 4.1E-08 66.5 -1.3 33 2-34 14-47 (592)
28 3jrp_A Fusion protein of prote 95.0 2.1 7.1E-05 39.0 19.7 69 268-346 171-242 (379)
29 3jro_A Fusion protein of prote 93.4 3.9 0.00013 42.1 18.5 67 269-345 170-239 (753)
30 4e54_B DNA damage-binding prot 93.1 2.1 7.1E-05 40.6 15.0 197 98-348 134-331 (435)
31 3mbr_X Glutamine cyclotransfer 92.0 5.8 0.0002 34.6 15.9 117 210-352 23-142 (243)
32 3dwl_C Actin-related protein 2 91.7 2.4 8.2E-05 38.9 13.1 103 235-347 124-239 (377)
33 3dsm_A Uncharacterized protein 91.0 8.6 0.0003 34.8 16.0 210 91-354 89-312 (328)
34 3nol_A Glutamine cyclotransfer 90.1 7.6 0.00026 34.3 13.9 113 214-352 50-164 (262)
35 3ei3_B DNA damage-binding prot 90.0 11 0.00038 34.4 21.4 196 98-347 88-285 (383)
36 1gxr_A ESG1, transducin-like e 89.5 11 0.00036 33.4 21.9 95 235-350 165-261 (337)
37 4gga_A P55CDC, cell division c 89.3 14 0.00048 34.4 21.6 198 94-349 114-315 (420)
38 3jrp_A Fusion protein of prote 89.1 12 0.00042 33.6 16.4 73 269-350 221-294 (379)
39 3dsm_A Uncharacterized protein 89.0 13 0.00044 33.6 20.9 200 96-352 2-221 (328)
40 4aez_A CDC20, WD repeat-contai 87.8 17 0.00058 33.6 20.8 189 96-348 104-297 (401)
41 3nok_A Glutaminyl cyclase; bet 86.8 9.9 0.00034 33.7 12.3 113 211-352 58-173 (268)
42 1k8k_C P40, ARP2/3 complex 41 86.3 18 0.00063 32.4 22.8 197 98-348 22-237 (372)
43 2z2n_A Virginiamycin B lyase; 85.1 18 0.00061 31.3 20.1 189 94-348 107-299 (299)
44 3hfq_A Uncharacterized protein 85.1 21 0.00071 32.0 15.3 121 216-350 50-178 (347)
45 1yfq_A Cell cycle arrest prote 84.6 21 0.00072 31.6 20.8 107 234-348 171-286 (342)
46 3q7m_A Lipoprotein YFGL, BAMB; 83.9 25 0.00087 32.0 17.6 193 93-350 100-302 (376)
47 3vgz_A Uncharacterized protein 83.8 23 0.00079 31.5 23.0 205 93-349 97-308 (353)
48 4gqb_B Methylosome protein 50; 83.4 26 0.0009 31.8 17.9 98 235-350 194-295 (344)
49 3bws_A Protein LP49; two-domai 83.3 28 0.00097 32.1 21.0 196 94-349 178-395 (433)
50 1l0q_A Surface layer protein; 83.0 27 0.00093 31.7 21.6 191 94-348 40-237 (391)
51 1r5m_A SIR4-interacting protei 82.8 28 0.00095 31.7 16.4 98 234-343 311-424 (425)
52 3q7m_A Lipoprotein YFGL, BAMB; 82.6 21 0.00073 32.5 13.5 115 210-349 47-167 (376)
53 2ojh_A Uncharacterized protein 82.5 22 0.00075 30.3 18.0 100 234-351 154-265 (297)
54 1k8k_C P40, ARP2/3 complex 41 81.9 28 0.00097 31.1 16.4 141 173-343 30-172 (372)
55 4a11_B DNA excision repair pro 80.9 32 0.0011 31.1 18.2 32 314-347 248-279 (408)
56 2iwa_A Glutamine cyclotransfer 79.7 32 0.0011 30.3 14.8 111 217-352 32-144 (266)
57 3dwl_C Actin-related protein 2 78.6 6.1 0.00021 36.0 8.2 142 174-345 34-178 (377)
58 2dg1_A DRP35, lactonase; beta 77.6 37 0.0013 30.0 20.0 211 95-353 54-272 (333)
59 3hfq_A Uncharacterized protein 77.1 40 0.0014 30.0 22.8 74 268-351 250-326 (347)
60 3mkq_A Coatomer beta'-subunit; 77.0 67 0.0023 32.6 19.5 67 268-348 197-263 (814)
61 4ery_A WD repeat-containing pr 76.9 38 0.0013 29.6 21.4 96 235-349 131-228 (312)
62 4g56_B MGC81050 protein; prote 76.8 43 0.0015 30.3 15.1 97 235-349 206-306 (357)
63 1l0q_A Surface layer protein; 76.5 44 0.0015 30.2 20.5 182 104-349 10-194 (391)
64 3vl1_A 26S proteasome regulato 75.2 49 0.0017 30.2 23.0 72 268-352 258-332 (420)
65 3fm0_A Protein CIAO1; WDR39,SG 73.6 50 0.0017 29.6 19.6 63 268-342 161-223 (345)
66 3hrp_A Uncharacterized protein 73.5 33 0.0011 32.1 11.9 116 215-350 140-255 (409)
67 2bkl_A Prolyl endopeptidase; m 72.5 83 0.0028 31.5 24.0 146 173-351 252-404 (695)
68 4aow_A Guanine nucleotide-bind 72.3 50 0.0017 28.9 18.4 31 314-346 309-339 (340)
69 1rwi_B Serine/threonine-protei 71.6 46 0.0016 28.2 19.8 187 95-346 76-266 (270)
70 3bws_A Protein LP49; two-domai 71.3 63 0.0021 29.6 14.1 100 235-348 146-247 (433)
71 3u4y_A Uncharacterized protein 70.9 54 0.0018 28.7 21.8 192 96-347 9-210 (331)
72 3bg1_A Protein SEC13 homolog; 70.4 57 0.0019 28.8 15.0 58 277-344 186-247 (316)
73 3sjl_D Methylamine dehydrogena 69.7 72 0.0025 29.7 14.7 122 216-357 237-377 (386)
74 1got_B GT-beta; complex (GTP-b 69.6 61 0.0021 28.9 21.4 93 235-347 166-260 (340)
75 3m0c_C LDL receptor, low-densi 68.7 1.1E+02 0.0038 31.5 24.7 132 216-369 525-657 (791)
76 2hqs_A Protein TOLB; TOLB, PAL 68.3 76 0.0026 29.4 21.5 187 106-350 159-350 (415)
77 1ri6_A Putative isomerase YBHE 68.2 61 0.0021 28.3 20.8 109 234-351 152-271 (343)
78 3mbr_X Glutamine cyclotransfer 68.0 60 0.002 28.1 18.7 145 172-354 42-190 (243)
79 4a11_B DNA excision repair pro 66.9 72 0.0025 28.6 19.1 32 314-347 337-368 (408)
80 2hqs_A Protein TOLB; TOLB, PAL 66.5 83 0.0028 29.2 22.0 186 106-350 203-393 (415)
81 3scy_A Hypothetical bacterial 65.7 75 0.0025 28.4 15.1 103 234-350 234-345 (361)
82 2aq5_A Coronin-1A; WD40 repeat 65.3 81 0.0028 28.7 21.8 104 234-351 199-308 (402)
83 3mmy_A MRNA export factor; mRN 63.2 79 0.0027 27.8 21.2 33 314-348 276-308 (368)
84 3sfz_A APAF-1, apoptotic pepti 63.1 80 0.0027 34.0 13.8 94 234-347 1066-1161(1249)
85 3i2n_A WD repeat-containing pr 63.0 79 0.0027 27.7 22.0 72 268-346 270-355 (357)
86 1gxr_A ESG1, transducin-like e 62.6 77 0.0026 27.5 20.8 87 235-342 248-335 (337)
87 3g4e_A Regucalcin; six bladed 62.5 79 0.0027 27.5 20.6 204 94-353 22-239 (297)
88 2ovr_B FBW7, F-BOX/WD repeat p 62.3 98 0.0034 28.6 23.4 99 234-345 340-443 (445)
89 1sq9_A Antiviral protein SKI8; 60.7 94 0.0032 27.9 20.9 69 272-348 199-271 (397)
90 3nok_A Glutaminyl cyclase; bet 59.5 92 0.0032 27.4 14.1 115 214-353 103-220 (268)
91 3vl1_A 26S proteasome regulato 58.9 1.1E+02 0.0036 27.9 19.3 100 234-344 314-419 (420)
92 1evh_A WH1 domain, protein (ME 57.3 20 0.0007 26.9 5.5 41 107-157 12-52 (112)
93 1pby_B Quinohemoprotein amine 55.6 53 0.0018 28.7 9.2 99 234-353 220-320 (337)
94 3no2_A Uncharacterized protein 55.2 1E+02 0.0036 26.7 14.9 26 324-349 175-200 (276)
95 1yr2_A Prolyl oligopeptidase; 54.2 1.8E+02 0.0063 29.2 17.4 115 216-350 327-447 (741)
96 1q7f_A NHL, brain tumor CG1071 54.0 1E+02 0.0035 26.2 22.0 190 94-344 86-280 (286)
97 3vgz_A Uncharacterized protein 53.9 1.1E+02 0.0039 26.7 16.4 118 213-349 96-220 (353)
98 2ynn_A Coatomer subunit beta'; 51.3 1.2E+02 0.0042 26.3 18.7 68 268-349 197-264 (304)
99 3jro_A Fusion protein of prote 50.8 2.1E+02 0.0072 28.9 14.6 98 234-346 32-134 (753)
100 2ad6_A Methanol dehydrogenase 50.3 1.9E+02 0.0066 28.3 13.0 120 210-349 56-190 (571)
101 2pm9_A Protein WEB1, protein t 49.7 1.5E+02 0.005 26.7 18.3 94 235-346 242-339 (416)
102 3nol_A Glutamine cyclotransfer 49.2 1.4E+02 0.0046 26.2 15.9 144 172-353 64-211 (262)
103 3v9f_A Two-component system se 49.0 2.3E+02 0.0078 28.7 21.7 146 174-351 470-618 (781)
104 1p22_A F-BOX/WD-repeat protein 48.9 1.6E+02 0.0055 27.0 19.2 105 213-346 262-367 (435)
105 3mmy_A MRNA export factor; mRN 48.2 1.4E+02 0.0048 26.1 11.5 70 269-350 54-123 (368)
106 1n7d_A LDL receptor, low-densi 48.0 1.6E+02 0.0054 29.8 12.2 110 216-349 507-619 (699)
107 3e5z_A Putative gluconolactona 46.9 1.4E+02 0.0047 25.6 22.7 201 98-353 42-255 (296)
108 3v7d_B Cell division control p 46.3 1.8E+02 0.0062 26.8 24.1 68 267-348 278-345 (464)
109 1ri6_A Putative isomerase YBHE 46.0 1.5E+02 0.005 25.7 19.2 74 268-351 241-317 (343)
110 3zwl_B Eukaryotic translation 45.7 1.5E+02 0.0052 25.8 22.7 69 268-349 186-254 (369)
111 1kb0_A Quinohemoprotein alcoho 45.6 1.7E+02 0.0059 29.3 12.0 121 210-349 71-204 (677)
112 3ow8_A WD repeat-containing pr 45.3 1.6E+02 0.0054 25.9 19.2 95 235-349 188-284 (321)
113 1nir_A Nitrite reductase; hemo 43.9 1.7E+02 0.006 28.3 11.4 106 234-348 347-462 (543)
114 3zwl_B Eukaryotic translation 43.2 1.7E+02 0.0057 25.5 15.9 102 234-344 97-206 (369)
115 3sfz_A APAF-1, apoptotic pepti 42.4 3.5E+02 0.012 29.0 24.6 99 235-349 725-833 (1249)
116 1egx_A VAsp, vasodilator-stimu 41.4 49 0.0017 25.0 5.3 42 107-157 12-53 (115)
117 1r5m_A SIR4-interacting protei 40.4 2E+02 0.0069 25.6 23.9 95 234-349 228-324 (425)
118 2xzh_A Clathrin heavy chain 1; 40.3 1.1E+02 0.0037 28.1 8.3 36 315-350 261-296 (365)
119 2pm7_B Protein transport prote 40.2 1.8E+02 0.0061 25.0 19.8 66 270-345 171-239 (297)
120 1jmx_B Amine dehydrogenase; ox 40.0 1.8E+02 0.0063 25.1 10.9 100 234-346 22-136 (349)
121 2kwv_A RAD30 homolog B, DNA po 40.0 14 0.00046 22.8 1.5 16 2-17 22-37 (48)
122 3bg1_A Protein SEC13 homolog; 39.7 1.9E+02 0.0065 25.2 17.4 68 275-351 233-301 (316)
123 1rwi_B Serine/threonine-protei 39.7 1.7E+02 0.0056 24.5 17.2 190 94-349 32-227 (270)
124 1pgu_A Actin interacting prote 38.5 2.7E+02 0.0091 26.6 18.0 201 94-350 27-244 (615)
125 2aq5_A Coronin-1A; WD40 repeat 38.5 2.2E+02 0.0076 25.6 19.1 95 235-346 156-256 (402)
126 3fm0_A Protein CIAO1; WDR39,SG 38.0 2.1E+02 0.0073 25.2 20.0 100 235-345 174-284 (345)
127 1sq9_A Antiviral protein SKI8; 37.2 2.2E+02 0.0076 25.3 19.5 104 234-346 259-397 (397)
128 1kv9_A Type II quinohemoprotei 36.8 3.3E+02 0.011 27.1 12.4 120 210-349 60-192 (668)
129 3p5b_L Low density lipoprotein 36.3 2.6E+02 0.0088 25.7 12.5 24 214-243 298-321 (400)
130 4a2l_A BT_4663, two-component 35.9 3.6E+02 0.012 27.3 22.5 152 174-350 236-392 (795)
131 3v65_B Low-density lipoprotein 35.4 2.6E+02 0.0089 25.5 21.9 211 94-369 125-343 (386)
132 3e5z_A Putative gluconolactona 34.7 2.1E+02 0.0074 24.3 17.8 105 216-349 182-291 (296)
133 4gqb_B Methylosome protein 50; 34.5 2.5E+02 0.0085 25.0 17.7 94 234-347 238-334 (344)
134 1ddw_A GLGF-domain protein hom 34.2 91 0.0031 23.7 5.9 40 106-157 11-51 (120)
135 1q7f_A NHL, brain tumor CG1071 33.9 2.2E+02 0.0074 24.1 26.4 203 94-352 38-246 (286)
136 1jmx_B Amine dehydrogenase; ox 33.6 2.3E+02 0.008 24.4 10.3 99 235-354 235-336 (349)
137 3v9f_A Two-component system se 33.4 3.9E+02 0.013 26.9 20.7 206 95-351 322-531 (781)
138 3lrv_A PRE-mRNA-splicing facto 33.3 2.5E+02 0.0085 24.6 21.1 204 90-349 88-299 (343)
139 1yiq_A Quinohemoprotein alcoho 33.2 2.6E+02 0.009 28.0 11.0 121 210-349 64-197 (689)
140 2xyi_A Probable histone-bindin 32.6 2.9E+02 0.01 25.2 16.2 101 234-348 301-414 (430)
141 1got_B GT-beta; complex (GTP-b 32.3 2.6E+02 0.0088 24.5 19.9 89 235-341 250-340 (340)
142 2z2n_A Virginiamycin B lyase; 32.2 2.3E+02 0.0077 23.8 21.5 196 91-352 20-220 (299)
143 2dg1_A DRP35, lactonase; beta 32.0 2.5E+02 0.0086 24.3 11.8 115 215-350 54-177 (333)
144 3iz6_a 40S ribosomal protein R 31.4 2.8E+02 0.0097 24.8 12.2 72 268-348 260-333 (380)
145 2pm9_A Protein WEB1, protein t 31.2 2.8E+02 0.0097 24.7 16.2 68 269-345 178-250 (416)
146 3v64_C Agrin; beta propeller, 30.9 2.9E+02 0.01 24.7 22.8 212 93-369 81-300 (349)
147 2ecf_A Dipeptidyl peptidase IV 30.8 4E+02 0.014 26.3 19.6 189 107-347 264-462 (741)
148 2ojh_A Uncharacterized protein 30.6 2.3E+02 0.0079 23.5 19.3 186 105-350 21-212 (297)
149 1erj_A Transcriptional repress 30.4 3E+02 0.01 24.7 23.6 201 96-348 134-345 (393)
150 3no2_A Uncharacterized protein 30.2 2.6E+02 0.009 24.0 12.6 107 234-353 57-164 (276)
151 4aez_A CDC20, WD repeat-contai 30.1 3.1E+02 0.01 24.7 22.7 97 235-350 241-342 (401)
152 3iuj_A Prolyl endopeptidase; h 30.0 4.2E+02 0.014 26.3 19.7 116 215-351 290-412 (693)
153 3ow8_A WD repeat-containing pr 30.0 2.8E+02 0.0095 24.2 19.6 89 234-342 229-319 (321)
154 1npe_A Nidogen, entactin; glyc 29.8 2.5E+02 0.0085 23.6 25.8 195 93-351 44-246 (267)
155 2z3z_A Dipeptidyl aminopeptida 29.6 4.1E+02 0.014 26.0 22.4 191 106-346 235-437 (706)
156 3p5b_L Low density lipoprotein 29.4 3.4E+02 0.011 24.9 24.5 130 216-370 213-346 (400)
157 1bpo_A Protein (clathrin); cla 28.9 1.9E+02 0.0064 27.7 8.2 36 315-350 260-295 (494)
158 4ery_A WD repeat-containing pr 28.9 2.7E+02 0.0094 23.7 21.7 100 234-349 172-273 (312)
159 2xzm_R RACK1; ribosome, transl 28.8 3E+02 0.01 24.1 11.8 72 268-347 38-110 (343)
160 3dm0_A Maltose-binding peripla 28.4 4.4E+02 0.015 26.0 19.0 27 315-343 666-692 (694)
161 1pjx_A Dfpase, DIISOPROPYLFLUO 27.9 2.8E+02 0.0096 23.6 11.2 116 216-350 28-167 (314)
162 4ggc_A P55CDC, cell division c 27.5 2.8E+02 0.0096 23.4 21.8 67 94-184 34-100 (318)
163 2jp2_A Spred-2, sprouty-relate 26.4 93 0.0032 23.8 4.7 42 107-157 21-65 (126)
164 3u4y_A Uncharacterized protein 26.3 3.1E+02 0.011 23.5 20.0 105 234-350 199-310 (331)
165 3azo_A Aminopeptidase; POP fam 26.3 4.6E+02 0.016 25.5 19.2 117 216-351 252-376 (662)
166 2hes_X YDR267CP; beta-propelle 26.2 3.3E+02 0.011 23.7 11.5 90 268-367 118-208 (330)
167 4a2l_A BT_4663, two-component 25.9 5.2E+02 0.018 26.0 24.0 207 96-351 367-578 (795)
168 2mad_H Methylamine dehydrogena 25.1 3.9E+02 0.013 24.2 15.2 70 268-349 278-355 (373)
169 2vdu_B TRNA (guanine-N(7)-)-me 25.0 4E+02 0.014 24.4 21.7 103 235-350 222-348 (450)
170 1i2h_A PSD-ZIP45(homer-1C/VESL 25.0 1.4E+02 0.0048 24.2 5.7 39 107-157 17-56 (168)
171 3amr_A 3-phytase; beta-propell 24.7 4E+02 0.014 24.3 15.7 100 234-343 100-209 (355)
172 1vyh_C Platelet-activating fac 24.6 4E+02 0.014 24.1 20.9 65 269-347 308-372 (410)
173 1w6s_A Methanol dehydrogenase 24.3 5.1E+02 0.018 25.4 12.3 120 210-349 56-196 (599)
174 1npe_A Nidogen, entactin; glyc 24.2 3.2E+02 0.011 22.9 19.2 112 216-350 90-204 (267)
175 3mkq_A Coatomer beta'-subunit; 24.2 5.4E+02 0.018 25.6 15.9 94 234-346 36-130 (814)
176 3k26_A Polycomb protein EED; W 24.1 3.5E+02 0.012 23.3 21.7 68 269-344 299-366 (366)
177 1erj_A Transcriptional repress 24.0 3.9E+02 0.013 23.9 17.7 97 234-346 188-289 (393)
178 3scy_A Hypothetical bacterial 23.9 3.7E+02 0.013 23.5 16.6 76 268-351 221-300 (361)
179 3dw8_B Serine/threonine-protei 23.3 2.7E+02 0.0092 25.2 8.5 73 268-347 188-261 (447)
180 4g56_B MGC81050 protein; prote 23.2 3.9E+02 0.013 23.6 20.0 92 235-345 251-344 (357)
181 2fp8_A Strictosidine synthase; 22.6 3.8E+02 0.013 23.2 12.7 30 216-251 29-58 (322)
182 2iwa_A Glutamine cyclotransfer 22.3 3.8E+02 0.013 23.2 20.3 194 96-345 31-238 (266)
183 2j04_A TAU60, YPL007P, hypothe 22.2 2.7E+02 0.0091 27.6 8.3 32 313-346 131-162 (588)
184 2pbi_B Guanine nucleotide-bind 21.7 4.2E+02 0.014 23.4 22.3 89 235-341 264-354 (354)
185 2fp8_A Strictosidine synthase; 21.2 4E+02 0.014 23.0 12.5 53 233-288 260-312 (322)
186 3s94_A LRP-6, low-density lipo 21.1 6E+02 0.02 25.0 22.6 261 44-370 3-269 (619)
187 3c75_H MADH, methylamine dehyd 20.2 5.3E+02 0.018 24.0 13.7 70 268-349 330-407 (426)
188 1flg_A Protein (quinoprotein e 20.2 6E+02 0.021 24.7 13.3 121 209-349 61-198 (582)
189 2z3z_A Dipeptidyl aminopeptida 20.2 6.1E+02 0.021 24.7 18.8 154 172-350 234-397 (706)
No 1
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=99.12 E-value=6.7e-08 Score=90.04 Aligned_cols=198 Identities=11% Similarity=0.069 Sum_probs=124.8
Q ss_pred cEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEEEEEcCCCceE
Q 040444 107 DIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRSWT 186 (409)
Q Consensus 107 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~vyss~t~~Wr 186 (409)
.++++||.|++|..+|+.+..+. . ++.... ++ +++.++....... ......+++|+..+++|+
T Consensus 68 ~~~~~d~~~~~W~~~~~~p~~r~------~---~~~~~~---~~-~lyv~GG~~~~~~----~~~~~~~~~~d~~~~~W~ 130 (315)
T 4asc_A 68 YFLQFDHLDSEWLGMPPLPSPRC------L---FGLGEA---LN-SIYVVGGREIKDG----ERCLDSVMCYDRLSFKWG 130 (315)
T ss_dssp EEEEEETTTTEEEECCCBSSCEE------S---CEEEEE---TT-EEEEECCEESSTT----CCBCCCEEEEETTTTEEE
T ss_pred ceEEecCCCCeEEECCCCCcchh------c---eeEEEE---CC-EEEEEeCCcCCCC----CcccceEEEECCCCCcEe
Confidence 48899999999999988764311 1 111111 12 4555554321000 123457899999999999
Q ss_pred EccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcceeeec-CCCCCCCCCCceEEEE
Q 040444 187 RVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLP-QPNYGAREKDFVLDVG 265 (409)
Q Consensus 187 ~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~-lP~~~~~~~~~~~~L~ 265 (409)
.++.+|. .. ....++.++|.+|.+............+..||+.+.+|+.++ +|. +. .....+
T Consensus 131 ~~~~~p~----------~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r----~~~~~~ 193 (315)
T 4asc_A 131 ESDPLPY----------VV--YGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQT-AR----SLFGAT 193 (315)
T ss_dssp ECCCCSS----------CC--BSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSS-CC----BSCEEE
T ss_pred ECCCCCC----------cc--cceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCC-ch----hceEEE
Confidence 9988772 21 234567899999999865322223346999999999999874 343 22 122467
Q ss_pred EeCCeEEEEEecCCC--eEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcC---------
Q 040444 266 ALEGHMCLMCNYDLV--KVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNG--------- 334 (409)
Q Consensus 266 ~~~G~L~~~~~~~~~--~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~--------- 334 (409)
..+|+|+++...... .-++|+++-. ...|+.+..++... .....+.. + +.|++....
T Consensus 194 ~~~~~iyv~GG~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r------~~~~~~~~---~-~~l~v~GG~~~~~~~~~~ 261 (315)
T 4asc_A 194 VHDGRIIVAAGVTDTGLTSSAEVYSIT--DNKWAPFEAFPQER------SSLSLVSL---V-GTLYAIGGFATLETESGE 261 (315)
T ss_dssp EETTEEEEEEEECSSSEEEEEEEEETT--TTEEEEECCCSSCC------BSCEEEEE---T-TEEEEEEEEEEEECTTSC
T ss_pred EECCEEEEEeccCCCCccceEEEEECC--CCeEEECCCCCCcc------cceeEEEE---C-CEEEEECCccccCcCCcc
Confidence 789999999876433 4578887742 36899875433221 11122222 3 445543211
Q ss_pred ------cEEEEEECCCCcEEEE
Q 040444 335 ------EKLVWYDWKRKKLKTV 350 (409)
Q Consensus 335 ------~~l~~yd~~~~~~~~v 350 (409)
..+..||+++++|+.+
T Consensus 262 ~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 262 LVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEEEEEEEEEEEETTTTEEEEE
T ss_pred ccccccCcEEEecCCCChhhhh
Confidence 2488999999999998
No 2
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=99.07 E-value=7.4e-08 Score=89.88 Aligned_cols=197 Identities=13% Similarity=0.108 Sum_probs=124.1
Q ss_pred EEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEEEEEcCCCceEE
Q 040444 108 IALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRSWTR 187 (409)
Q Consensus 108 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~vyss~t~~Wr~ 187 (409)
++++||.|++|..+|+.+..+. ......+ ++ +++.++.... .. ......+++|+..+++|+.
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~------~~~~~~~------~~-~iyv~GG~~~-~~----~~~~~~~~~yd~~~~~W~~ 141 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARC------LFGLGEV------DD-KIYVVAGKDL-QT----EASLDSVLCYDPVAAKWSE 141 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBC------SCEEEEE------TT-EEEEEEEEBT-TT----CCEEEEEEEEETTTTEEEE
T ss_pred EEEEeCCCCcEEECCCCCcccc------ccceEEE------CC-EEEEEcCccC-CC----CcccceEEEEeCCCCCEeE
Confidence 8899999999999988765321 1111111 12 4555554431 00 1245679999999999999
Q ss_pred ccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcceeeecCCCCCCCCCCceEEEEEe
Q 040444 188 VKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDFVLDVGAL 267 (409)
Q Consensus 188 ~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~~L~~~ 267 (409)
++.+|. .. ....++.++|.+|.+............+..||+.+.+|..++..+... .....+..
T Consensus 142 ~~~~p~----------~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----~~~~~~~~ 205 (318)
T 2woz_A 142 VKNLPI----------KV--YGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPR----SMFGVAIH 205 (318)
T ss_dssp ECCCSS----------CE--ESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCC----BSCEEEEE
T ss_pred CCCCCC----------cc--cccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCc----ccceEEEE
Confidence 988772 22 234567799999998764322122345999999999999985322122 11246778
Q ss_pred CCeEEEEEecCCC--eEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEc------------
Q 040444 268 EGHMCLMCNYDLV--KVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVN------------ 333 (409)
Q Consensus 268 ~G~L~~~~~~~~~--~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~------------ 333 (409)
+|+|+++...... .-++|+++-. ...|+++..++... ....++.. + +.|++...
T Consensus 206 ~~~iyv~GG~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r------~~~~~~~~---~-~~i~v~GG~~~~~~~~~~~~ 273 (318)
T 2woz_A 206 KGKIVIAGGVTEDGLSASVEAFDLK--TNKWEVMTEFPQER------SSISLVSL---A-GSLYAIGGFAMIQLESKEFA 273 (318)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEETT--TCCEEECCCCSSCC------BSCEEEEE---T-TEEEEECCBCCBC----CCB
T ss_pred CCEEEEEcCcCCCCccceEEEEECC--CCeEEECCCCCCcc------cceEEEEE---C-CEEEEECCeeccCCCCceec
Confidence 9999999876433 4567777642 36799865443221 11222332 3 45555321
Q ss_pred ---CcEEEEEECCCCcEEEE
Q 040444 334 ---GEKLVWYDWKRKKLKTV 350 (409)
Q Consensus 334 ---~~~l~~yd~~~~~~~~v 350 (409)
...+..||+++++|+++
T Consensus 274 ~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 274 PTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp CCBCCCEEEEETTTTEEEEE
T ss_pred cceeeeEEEEeCCCCEehhh
Confidence 13489999999999998
No 3
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=99.02 E-value=8.7e-08 Score=88.77 Aligned_cols=210 Identities=9% Similarity=0.003 Sum_probs=129.8
Q ss_pred cccceEEEee-----CCccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCC
Q 040444 94 SCNGLLALSN-----SDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLG 168 (409)
Q Consensus 94 sc~GLl~l~~-----~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~ 168 (409)
..+|.|.+.. ....+.++||.|++|..+|+++..+. ...... ++ + +++.++.... .
T Consensus 53 ~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~------~~~~~~--~~----~-~iyv~GG~~~--~---- 113 (306)
T 3ii7_A 53 FWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRD------SLAACA--AE----G-KIYTSGGSEV--G---- 113 (306)
T ss_dssp EETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCB------SCEEEE--ET----T-EEEEECCBBT--T----
T ss_pred EECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcccc------ceeEEE--EC----C-EEEEECCCCC--C----
Confidence 3466654443 13578999999999999988764321 111111 11 1 4555543321 0
Q ss_pred cceecEEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCC---ccEEEEEECCCcce
Q 040444 169 CFVEYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGI---GNLIVAFDLGLEEF 245 (409)
Q Consensus 169 ~~~~~~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~---~~~Il~fDl~~e~~ 245 (409)
......+++|+..+++|+.++.+|. .. ....++.++|.+|.+......... ...+..||+.+++|
T Consensus 114 ~~~~~~~~~~d~~~~~W~~~~~~p~----------~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W 181 (306)
T 3ii7_A 114 NSALYLFECYDTRTESWHTKPSMLT----------QR--CSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETW 181 (306)
T ss_dssp BSCCCCEEEEETTTTEEEEECCCSS----------CC--BSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEE
T ss_pred CcEeeeEEEEeCCCCceEeCCCCcC----------Cc--ceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeE
Confidence 1234578999999999999988772 21 234567789999998754322110 34599999999999
Q ss_pred eeec-CCCCCCCCCCceEEEEEeCCeEEEEEecCCC--eEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEee
Q 040444 246 RLLP-QPNYGAREKDFVLDVGALEGHMCLMCNYDLV--KVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNE 322 (409)
Q Consensus 246 ~~i~-lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~--~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~ 322 (409)
+.++ +|. .. ....++..+|+|+++...... .-++|+++-. ...|+.+..++... .....+..
T Consensus 182 ~~~~~~p~-~r----~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r------~~~~~~~~-- 246 (306)
T 3ii7_A 182 TELCPMIE-AR----KNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIK--LNEWKMVSPMPWKG------VTVKCAAV-- 246 (306)
T ss_dssp EEECCCSS-CC----BSCEEEEETTEEEEECCEETTEEBCCEEEEETT--TTEEEECCCCSCCB------SCCEEEEE--
T ss_pred EECCCccc-hh----hcceEEEECCEEEEEeCCCCCCCCceEEEeeCC--CCcEEECCCCCCCc------cceeEEEE--
Confidence 9985 333 22 122567789999998765332 3467777642 36798865433221 11122222
Q ss_pred cCCCEEEEEEc------CcEEEEEECCCCcEEEEE
Q 040444 323 DGGDKVLLEVN------GEKLVWYDWKRKKLKTVK 351 (409)
Q Consensus 323 ~~~~~ill~~~------~~~l~~yd~~~~~~~~v~ 351 (409)
+ +.|++... ...+..||+++++|+.+.
T Consensus 247 -~-~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~ 279 (306)
T 3ii7_A 247 -G-SIVYVLAGFQGVGRLGHILEYNTETDKWVANS 279 (306)
T ss_dssp -T-TEEEEEECBCSSSBCCEEEEEETTTTEEEEEE
T ss_pred -C-CEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCC
Confidence 3 55655432 146999999999999984
No 4
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=99.02 E-value=1e-07 Score=88.56 Aligned_cols=197 Identities=13% Similarity=0.062 Sum_probs=123.9
Q ss_pred ccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEEEEEcCCCce
Q 040444 106 QDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRSW 185 (409)
Q Consensus 106 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~vyss~t~~W 185 (409)
+.++++||.|++|..+|+++..+. ...... ++ . +++.++.... ......+++|+..+++|
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~------~~~~~~--~~----~-~iyv~GG~~~-------~~~~~~~~~yd~~~~~W 149 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRN------RIGVGV--ID----G-HIYAVGGSHG-------CIHHNSVERYEPERDEW 149 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCB------TCEEEE--ET----T-EEEEECCEET-------TEECCCEEEEETTTTEE
T ss_pred ceEEEECCCCCeEeECCCCCcCcc------ccEEEE--EC----C-EEEEEcCCCC-------CcccccEEEECCCCCeE
Confidence 468999999999999997765321 111111 11 2 4555544322 12345789999999999
Q ss_pred EEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcceeeecCCCCCCCCCCceEEEE
Q 040444 186 TRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDFVLDVG 265 (409)
Q Consensus 186 r~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~~L~ 265 (409)
+.++.+|. .. ....++.++|.+|-+...... .....+..||+.+++|..++..+... .....+
T Consensus 150 ~~~~~~p~----------~r--~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~~~~p~~r----~~~~~~ 212 (308)
T 1zgk_A 150 HLVAPMLT----------RR--IGVGVAVLNRLLYAVGGFDGT-NRLNSAECYYPERNEWRMITAMNTIR----SGAGVC 212 (308)
T ss_dssp EECCCCSS----------CC--BSCEEEEETTEEEEECCBCSS-CBCCCEEEEETTTTEEEECCCCSSCC----BSCEEE
T ss_pred eECCCCCc----------cc--cceEEEEECCEEEEEeCCCCC-CcCceEEEEeCCCCeEeeCCCCCCcc----ccceEE
Confidence 99987772 21 234557789999998754322 11345999999999999874322122 122466
Q ss_pred EeCCeEEEEEecCCC--eEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEc------CcEE
Q 040444 266 ALEGHMCLMCNYDLV--KVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVN------GEKL 337 (409)
Q Consensus 266 ~~~G~L~~~~~~~~~--~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~------~~~l 337 (409)
..+|+|+++...... .-++|+++-. ...|+++..++... ...-.++. + +.|++... ...+
T Consensus 213 ~~~~~iyv~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~p~~r------~~~~~~~~---~-~~i~v~GG~~~~~~~~~v 280 (308)
T 1zgk_A 213 VLHNCIYAAGGYDGQDQLNSVERYDVE--TETWTFVAPMKHRR------SALGITVH---Q-GRIYVLGGYDGHTFLDSV 280 (308)
T ss_dssp EETTEEEEECCBCSSSBCCCEEEEETT--TTEEEECCCCSSCC------BSCEEEEE---T-TEEEEECCBCSSCBCCEE
T ss_pred EECCEEEEEeCCCCCCccceEEEEeCC--CCcEEECCCCCCCc------cceEEEEE---C-CEEEEEcCcCCCcccceE
Confidence 779999998865432 4567777642 36798865433221 11122222 3 55655422 2459
Q ss_pred EEEECCCCcEEEEE
Q 040444 338 VWYDWKRKKLKTVK 351 (409)
Q Consensus 338 ~~yd~~~~~~~~v~ 351 (409)
..||+++++|+++.
T Consensus 281 ~~yd~~~~~W~~~~ 294 (308)
T 1zgk_A 281 ECYDPDTDTWSEVT 294 (308)
T ss_dssp EEEETTTTEEEEEE
T ss_pred EEEcCCCCEEeecC
Confidence 99999999999884
No 5
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.99 E-value=5.6e-11 Score=79.86 Aligned_cols=42 Identities=14% Similarity=0.274 Sum_probs=38.6
Q ss_pred CCCCcHHHHHHHHhcCCCCceeEEEecccchhhhcCChhHHH
Q 040444 1 MSKVPLDVVTGTLYQLPVKTLLRYRCLSRPLCSIIDDPDFIK 42 (409)
Q Consensus 1 m~~LP~Dll~eIL~rLP~ksL~R~r~VCK~W~~li~~~~F~~ 42 (409)
++.||+|++.+||++||+++++++++|||+|+.++.++.|-+
T Consensus 9 ~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~ 50 (53)
T 1fs1_A 9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ 50 (53)
T ss_dssp CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC-
T ss_pred HHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHH
Confidence 468999999999999999999999999999999999988743
No 6
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.99 E-value=5.3e-11 Score=108.52 Aligned_cols=48 Identities=17% Similarity=0.313 Sum_probs=45.4
Q ss_pred CCCCcHHHHHHHHhcCCCCcee-EEEecccchhhhcCChhHHHHHHhcc
Q 040444 1 MSKVPLDVVTGTLYQLPVKTLL-RYRCLSRPLCSIIDDPDFIKLQLNNS 48 (409)
Q Consensus 1 m~~LP~Dll~eIL~rLP~ksL~-R~r~VCK~W~~li~~~~F~~~~~~~~ 48 (409)
|+.||+||+.+||+|||+++|+ ||++|||+|++|++++.|.+.|..+.
T Consensus 51 ~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~ 99 (297)
T 2e31_A 51 LAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE 99 (297)
T ss_dssp TTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred hhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence 4689999999999999999999 99999999999999999999998765
No 7
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=98.98 E-value=1.1e-07 Score=87.82 Aligned_cols=210 Identities=11% Similarity=0.099 Sum_probs=129.5
Q ss_pred cccceEEEeeC------CccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCC
Q 040444 94 SCNGLLALSNS------DQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNL 167 (409)
Q Consensus 94 sc~GLl~l~~~------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~ 167 (409)
..+|.|.+... ...+.++||.|++|..+|+++..+. ...... + ++ +++.++....
T Consensus 59 ~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~------~~~~~~--~----~~-~iyv~GG~~~------ 119 (302)
T 2xn4_A 59 YMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRS------TLGAAV--L----NG-LLYAVGGFDG------ 119 (302)
T ss_dssp EETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCB------SCEEEE--E----TT-EEEEEEEECS------
T ss_pred EECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCcccc------ceEEEE--E----CC-EEEEEcCCCC------
Confidence 34666555431 2468999999999999997764321 111111 1 12 4555554322
Q ss_pred CcceecEEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCC-CCccEEEEEECCCccee
Q 040444 168 GCFVEYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEF-GIGNLIVAFDLGLEEFR 246 (409)
Q Consensus 168 ~~~~~~~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~~~Il~fDl~~e~~~ 246 (409)
......+++|+..+++|+.++.+|. .. ....++.++|.+|-+....... .....+..||+.+++|.
T Consensus 120 -~~~~~~~~~~d~~~~~W~~~~~~p~----------~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~ 186 (302)
T 2xn4_A 120 -STGLSSVEAYNIKSNEWFHVAPMNT----------RR--SSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWT 186 (302)
T ss_dssp -SCEEEEEEEEETTTTEEEEECCCSS----------CC--BSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred -CccCceEEEEeCCCCeEeecCCCCC----------cc--cCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence 1234578999999999999987772 21 2344577899999987543211 01235999999999999
Q ss_pred eecCCCCCCCCCCceEEEEEeCCeEEEEEecCCC--eEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecC
Q 040444 247 LLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLV--KVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDG 324 (409)
Q Consensus 247 ~i~lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~--~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~ 324 (409)
.++-.+... ....++..+|+|+++...... .-++|+++-. ...|+.+..++... .....+.. +
T Consensus 187 ~~~~~p~~r----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~--~~~W~~~~~~~~~r------~~~~~~~~---~ 251 (302)
T 2xn4_A 187 YIAEMSTRR----SGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPT--TNAWRQVADMNMCR------RNAGVCAV---N 251 (302)
T ss_dssp EECCCSSCC----BSCEEEEETTEEEEECCBSSSSBCCCEEEEETT--TTEEEEECCCSSCC------BSCEEEEE---T
T ss_pred ECCCCcccc----ccccEEEECCEEEEECCCCCCcccceEEEEeCC--CCCEeeCCCCCCcc------ccCeEEEE---C
Confidence 884332122 122567789999999875432 3467777742 36799875443221 11222332 3
Q ss_pred CCEEEEEEc------CcEEEEEECCCCcEEEEE
Q 040444 325 GDKVLLEVN------GEKLVWYDWKRKKLKTVK 351 (409)
Q Consensus 325 ~~~ill~~~------~~~l~~yd~~~~~~~~v~ 351 (409)
+.|++... ...+..||+++++|+.+.
T Consensus 252 -~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 283 (302)
T 2xn4_A 252 -GLLYVVGGDDGSCNLASVEYYNPTTDKWTVVS 283 (302)
T ss_dssp -TEEEEECCBCSSSBCCCEEEEETTTTEEEECS
T ss_pred -CEEEEECCcCCCcccccEEEEcCCCCeEEECC
Confidence 55665422 134999999999999873
No 8
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.96 E-value=1.3e-07 Score=87.23 Aligned_cols=196 Identities=11% Similarity=0.077 Sum_probs=123.5
Q ss_pred ccEEEEcccccc---eeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEEEEEcCC
Q 040444 106 QDIALFNPATRQ---LFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKN 182 (409)
Q Consensus 106 ~~~~V~NP~T~~---~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~vyss~t 182 (409)
+.++++||.|++ |..+|+.+..+. ...... ++ + +++.++.... ......+++|+..+
T Consensus 78 ~~~~~~d~~~~~~~~W~~~~~~p~~r~------~~~~~~--~~----~-~lyv~GG~~~-------~~~~~~~~~~d~~~ 137 (301)
T 2vpj_A 78 SSVECLDYTADEDGVWYSVAPMNVRRG------LAGATT--LG----D-MIYVSGGFDG-------SRRHTSMERYDPNI 137 (301)
T ss_dssp CCEEEEETTCCTTCCCEEECCCSSCCB------SCEEEE--ET----T-EEEEECCBCS-------SCBCCEEEEEETTT
T ss_pred ceEEEEECCCCCCCeeEECCCCCCCcc------ceeEEE--EC----C-EEEEEcccCC-------CcccceEEEEcCCC
Confidence 479999999999 999987765321 111111 11 2 4555543321 12245789999999
Q ss_pred CceEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcceeeec-CCCCCCCCCCce
Q 040444 183 RSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLP-QPNYGAREKDFV 261 (409)
Q Consensus 183 ~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~-lP~~~~~~~~~~ 261 (409)
++|+.++.+|. .. ....++.++|.+|.+...... .....+..||+.+.+|..++ +|. .. ..
T Consensus 138 ~~W~~~~~~p~----------~r--~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~~~p~-~r----~~ 199 (301)
T 2vpj_A 138 DQWSMLGDMQT----------AR--EGAGLVVASGVIYCLGGYDGL-NILNSVEKYDPHTGHWTNVTPMAT-KR----SG 199 (301)
T ss_dssp TEEEEEEECSS----------CC--BSCEEEEETTEEEEECCBCSS-CBCCCEEEEETTTTEEEEECCCSS-CC----BS
T ss_pred CeEEECCCCCC----------Cc--ccceEEEECCEEEEECCCCCC-cccceEEEEeCCCCcEEeCCCCCc-cc----cc
Confidence 99999987762 21 234567789999998754322 12345999999999999984 333 22 12
Q ss_pred EEEEEeCCeEEEEEecCCC--eEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEc-C----
Q 040444 262 LDVGALEGHMCLMCNYDLV--KVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVN-G---- 334 (409)
Q Consensus 262 ~~L~~~~G~L~~~~~~~~~--~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~-~---- 334 (409)
...+..+|+|+++...... .-++|.++-. ...|+++..++... .....+.. + +.|++... +
T Consensus 200 ~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~p~~r------~~~~~~~~---~-~~i~v~GG~~~~~~ 267 (301)
T 2vpj_A 200 AGVALLNDHIYVVGGFDGTAHLSSVEAYNIR--TDSWTTVTSMTTPR------CYVGATVL---R-GRLYAIAGYDGNSL 267 (301)
T ss_dssp CEEEEETTEEEEECCBCSSSBCCCEEEEETT--TTEEEEECCCSSCC------BSCEEEEE---T-TEEEEECCBCSSSB
T ss_pred ceEEEECCEEEEEeCCCCCcccceEEEEeCC--CCcEEECCCCCCcc------cceeEEEE---C-CEEEEEcCcCCCcc
Confidence 2567789999998876432 3456776642 36798875443221 11222332 3 55655432 1
Q ss_pred -cEEEEEECCCCcEEEEE
Q 040444 335 -EKLVWYDWKRKKLKTVK 351 (409)
Q Consensus 335 -~~l~~yd~~~~~~~~v~ 351 (409)
..+..||+++++|+.+.
T Consensus 268 ~~~v~~yd~~~~~W~~~~ 285 (301)
T 2vpj_A 268 LSSIECYDPIIDSWEVVT 285 (301)
T ss_dssp EEEEEEEETTTTEEEEEE
T ss_pred cccEEEEcCCCCeEEEcC
Confidence 35899999999999874
No 9
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=98.81 E-value=2.3e-07 Score=85.92 Aligned_cols=198 Identities=14% Similarity=0.097 Sum_probs=123.0
Q ss_pred CccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEEEEEcCCCc
Q 040444 105 DQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRS 184 (409)
Q Consensus 105 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~vyss~t~~ 184 (409)
...+.++||.|++|..+++++..+. ...... + ++ +++.++... ......+++|+..+++
T Consensus 23 ~~~~~~~d~~~~~W~~~~~~p~~r~------~~~~~~--~----~~-~lyv~GG~~--------~~~~~~~~~~d~~~~~ 81 (306)
T 3ii7_A 23 PQSCRYFNPKDYSWTDIRCPFEKRR------DAACVF--W----DN-VVYILGGSQ--------LFPIKRMDCYNVVKDS 81 (306)
T ss_dssp TTSEEEEETTTTEEEECCCCSCCCB------SCEEEE--E----TT-EEEEECCBS--------SSBCCEEEEEETTTTE
T ss_pred CceEEEecCCCCCEecCCCCCcccc------eeEEEE--E----CC-EEEEEeCCC--------CCCcceEEEEeCCCCe
Confidence 3578999999999999987765321 111111 1 12 354444321 1234578999999999
Q ss_pred eEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcceeeecCCCCCCCCCCceEEE
Q 040444 185 WTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDFVLDV 264 (409)
Q Consensus 185 Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~~L 264 (409)
|..++.+|. .. ....++.++|.+|.+............+..||+.+.+|..++..+... .....
T Consensus 82 W~~~~~~p~----------~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~ 145 (306)
T 3ii7_A 82 WYSKLGPPT----------PR--DSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQR----CSHGM 145 (306)
T ss_dssp EEEEECCSS----------CC--BSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCC----BSCEE
T ss_pred EEECCCCCc----------cc--cceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCc----ceeEE
Confidence 999988772 21 234556789999998765422222345999999999999874332122 12245
Q ss_pred EEeCCeEEEEEecCCC------eEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEc-----
Q 040444 265 GALEGHMCLMCNYDLV------KVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVN----- 333 (409)
Q Consensus 265 ~~~~G~L~~~~~~~~~------~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~----- 333 (409)
+..+|+|+++...... .-++|+++-. ...|+++-.++... ...-.+.. + +.|++...
T Consensus 146 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r------~~~~~~~~---~-~~i~v~GG~~~~~ 213 (306)
T 3ii7_A 146 VEANGLIYVCGGSLGNNVSGRVLNSCEVYDPA--TETWTELCPMIEAR------KNHGLVFV---K-DKIFAVGGQNGLG 213 (306)
T ss_dssp EEETTEEEEECCEESCTTTCEECCCEEEEETT--TTEEEEECCCSSCC------BSCEEEEE---T-TEEEEECCEETTE
T ss_pred EEECCEEEEECCCCCCCCcccccceEEEeCCC--CCeEEECCCccchh------hcceEEEE---C-CEEEEEeCCCCCC
Confidence 6789999998764321 4457777642 36799875433221 11222222 3 55655421
Q ss_pred -CcEEEEEECCCCcEEEEE
Q 040444 334 -GEKLVWYDWKRKKLKTVK 351 (409)
Q Consensus 334 -~~~l~~yd~~~~~~~~v~ 351 (409)
...+..||+++++|+.+.
T Consensus 214 ~~~~~~~yd~~~~~W~~~~ 232 (306)
T 3ii7_A 214 GLDNVEYYDIKLNEWKMVS 232 (306)
T ss_dssp EBCCEEEEETTTTEEEECC
T ss_pred CCceEEEeeCCCCcEEECC
Confidence 134899999999999873
No 10
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.79 E-value=8.7e-07 Score=81.68 Aligned_cols=196 Identities=10% Similarity=0.079 Sum_probs=122.9
Q ss_pred ccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEEEEEcCCCc-
Q 040444 106 QDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRS- 184 (409)
Q Consensus 106 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~vyss~t~~- 184 (409)
..++++||.|++|..+|..+..+. ...... .+ + +++.++.... ......+++|+..+++
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~------~~~~~~--~~----~-~l~v~GG~~~-------~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRR------YVASVS--LH----D-RIYVIGGYDG-------RSRLSSVECLDYTADED 90 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCB------SCEEEE--ET----T-EEEEECCBCS-------SCBCCCEEEEETTCCTT
T ss_pred eEEEEEcCCCCeEEeCCCCChhhc------cccEEE--EC----C-EEEEEcCCCC-------CccCceEEEEECCCCCC
Confidence 468999999999999997664321 111111 11 2 4555543221 1234578999999999
Q ss_pred --eEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcceeeec-CCCCCCCCCCce
Q 040444 185 --WTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLP-QPNYGAREKDFV 261 (409)
Q Consensus 185 --Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~-lP~~~~~~~~~~ 261 (409)
|+.++.+|. .. ....++.++|.+|.+...... .....+..||+.+.+|..++ +|. .. ..
T Consensus 91 ~~W~~~~~~p~----------~r--~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~~~p~-~r----~~ 152 (301)
T 2vpj_A 91 GVWYSVAPMNV----------RR--GLAGATTLGDMIYVSGGFDGS-RRHTSMERYDPNIDQWSMLGDMQT-AR----EG 152 (301)
T ss_dssp CCCEEECCCSS----------CC--BSCEEEEETTEEEEECCBCSS-CBCCEEEEEETTTTEEEEEEECSS-CC----BS
T ss_pred CeeEECCCCCC----------Cc--cceeEEEECCEEEEEcccCCC-cccceEEEEcCCCCeEEECCCCCC-Cc----cc
Confidence 999988772 21 234567789999998765432 12346999999999999874 343 22 11
Q ss_pred EEEEEeCCeEEEEEecCCC--eEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEc------
Q 040444 262 LDVGALEGHMCLMCNYDLV--KVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVN------ 333 (409)
Q Consensus 262 ~~L~~~~G~L~~~~~~~~~--~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~------ 333 (409)
...+..+|+|+++...... .-++|+++-. ...|++.-.++... ........ + +.|++...
T Consensus 153 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~--~~~W~~~~~~p~~r------~~~~~~~~---~-~~i~v~GG~~~~~~ 220 (301)
T 2vpj_A 153 AGLVVASGVIYCLGGYDGLNILNSVEKYDPH--TGHWTNVTPMATKR------SGAGVALL---N-DHIYVVGGFDGTAH 220 (301)
T ss_dssp CEEEEETTEEEEECCBCSSCBCCCEEEEETT--TTEEEEECCCSSCC------BSCEEEEE---T-TEEEEECCBCSSSB
T ss_pred ceEEEECCEEEEECCCCCCcccceEEEEeCC--CCcEEeCCCCCccc------ccceEEEE---C-CEEEEEeCCCCCcc
Confidence 2456779999998765432 4567777642 36798874333211 11122222 3 55665432
Q ss_pred CcEEEEEECCCCcEEEEE
Q 040444 334 GEKLVWYDWKRKKLKTVK 351 (409)
Q Consensus 334 ~~~l~~yd~~~~~~~~v~ 351 (409)
...+..||+++++|+.+.
T Consensus 221 ~~~v~~yd~~~~~W~~~~ 238 (301)
T 2vpj_A 221 LSSVEAYNIRTDSWTTVT 238 (301)
T ss_dssp CCCEEEEETTTTEEEEEC
T ss_pred cceEEEEeCCCCcEEECC
Confidence 135999999999999884
No 11
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=98.76 E-value=2.2e-06 Score=79.59 Aligned_cols=204 Identities=10% Similarity=0.059 Sum_probs=120.9
Q ss_pred ccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEEEEEcCCCce
Q 040444 106 QDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRSW 185 (409)
Q Consensus 106 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~vyss~t~~W 185 (409)
..+.++||.|++|.. ++.+.+.++ .. ++... .++ +++.++........ ........+++|+..+++|
T Consensus 13 ~~~~~yd~~~~~W~~-~~~~~p~~r-----~~--~~~~~---~~~-~iyv~GG~~~~~~~-~~~~~~~~~~~~d~~~~~W 79 (315)
T 4asc_A 13 EGAVAYDPAANECYC-ASLSSQVPK-----NH--VSLVT---KEN-QVFVAGGLFYNEDN-KEDPMSAYFLQFDHLDSEW 79 (315)
T ss_dssp TEEEEEETTTTEEEE-EECCCCSCS-----SE--EEEEC---TTC-CEEEEEEEEECSSC-SSSCEEEEEEEEETTTTEE
T ss_pred CceEEECCCCCeEec-CCCCCCCCc-----cc--eEEEE---ECC-EEEEEcCcccCCCC-CccccccceEEecCCCCeE
Confidence 578999999999986 433322111 11 22221 122 34444443210000 0112334589999999999
Q ss_pred EEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCC--CCCCccEEEEEECCCcceeeec-CCCCCCCCCCceE
Q 040444 186 TRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRP--EFGIGNLIVAFDLGLEEFRLLP-QPNYGAREKDFVL 262 (409)
Q Consensus 186 r~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~~~~Il~fDl~~e~~~~i~-lP~~~~~~~~~~~ 262 (409)
+.++.+|. .. ....++.++|.+|.+..... .......+..||+.+.+|+.++ +|. .. ...
T Consensus 80 ~~~~~~p~----------~r--~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r----~~~ 142 (315)
T 4asc_A 80 LGMPPLPS----------PR--CLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPY-VV----YGH 142 (315)
T ss_dssp EECCCBSS----------CE--ESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSS-CC----BSC
T ss_pred EECCCCCc----------ch--hceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCC-cc----cce
Confidence 99988772 22 23456778999999876421 1123345999999999999874 343 22 122
Q ss_pred EEEEeCCeEEEEEecC-C--CeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEc--C---
Q 040444 263 DVGALEGHMCLMCNYD-L--VKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVN--G--- 334 (409)
Q Consensus 263 ~L~~~~G~L~~~~~~~-~--~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~--~--- 334 (409)
..+..+|+|+++.... . ..-++|+++-. ...|++.-.++... .....+.. + +.|++... .
T Consensus 143 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r------~~~~~~~~---~-~~iyv~GG~~~~~~ 210 (315)
T 4asc_A 143 TVLSHMDLVYVIGGKGSDRKCLNKMCVYDPK--KFEWKELAPMQTAR------SLFGATVH---D-GRIIVAAGVTDTGL 210 (315)
T ss_dssp EEEEETTEEEEECCBCTTSCBCCCEEEEETT--TTEEEECCCCSSCC------BSCEEEEE---T-TEEEEEEEECSSSE
T ss_pred eEEEECCEEEEEeCCCCCCcccceEEEEeCC--CCeEEECCCCCCch------hceEEEEE---C-CEEEEEeccCCCCc
Confidence 5677899999998762 2 14567777742 36798865433221 11222222 3 45555421 1
Q ss_pred -cEEEEEECCCCcEEEEE
Q 040444 335 -EKLVWYDWKRKKLKTVK 351 (409)
Q Consensus 335 -~~l~~yd~~~~~~~~v~ 351 (409)
..+..||+++++|+.+.
T Consensus 211 ~~~~~~yd~~~~~W~~~~ 228 (315)
T 4asc_A 211 TSSAEVYSITDNKWAPFE 228 (315)
T ss_dssp EEEEEEEETTTTEEEEEC
T ss_pred cceEEEEECCCCeEEECC
Confidence 25899999999999884
No 12
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.75 E-value=7.2e-06 Score=80.00 Aligned_cols=42 Identities=14% Similarity=0.247 Sum_probs=37.4
Q ss_pred CCCcHHHHHHHHhcCCCCceeEEEecccchhhhcCC-hhHHHH
Q 040444 2 SKVPLDVVTGTLYQLPVKTLLRYRCLSRPLCSIIDD-PDFIKL 43 (409)
Q Consensus 2 ~~LP~Dll~eIL~rLP~ksL~R~r~VCK~W~~li~~-~~F~~~ 43 (409)
+.||+||+.+||+.||+++|+|++.|||+|+.++.+ +..-+.
T Consensus 16 ~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~ 58 (464)
T 3v7d_B 16 TSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKK 58 (464)
T ss_dssp HHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHH
T ss_pred HHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 469999999999999999999999999999999998 654443
No 13
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.72 E-value=5.6e-06 Score=80.48 Aligned_cols=47 Identities=19% Similarity=0.143 Sum_probs=42.6
Q ss_pred CCCCcHHHHHHHHhcCCCCceeEEEecccchhhhcCChhHHHHHHhc
Q 040444 1 MSKVPLDVVTGTLYQLPVKTLLRYRCLSRPLCSIIDDPDFIKLQLNN 47 (409)
Q Consensus 1 m~~LP~Dll~eIL~rLP~ksL~R~r~VCK~W~~li~~~~F~~~~~~~ 47 (409)
++.||+|++.+||+.|++++|+|+++|||+|+.++.++.+-+....+
T Consensus 19 ~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~ 65 (445)
T 2ovr_B 19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKE 65 (445)
T ss_dssp TTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTT
T ss_pred hHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheee
Confidence 46799999999999999999999999999999999999887766543
No 14
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=98.72 E-value=9.4e-07 Score=81.56 Aligned_cols=197 Identities=12% Similarity=0.087 Sum_probs=122.4
Q ss_pred ccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEEEEEcCCCce
Q 040444 106 QDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRSW 185 (409)
Q Consensus 106 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~vyss~t~~W 185 (409)
+.+.++||.+++|..+++.|..+. ...... + ++ +++.++.... ......+++|+..+++|
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~------~~~~~~--~----~~-~lyv~GG~~~-------~~~~~~~~~~d~~~~~W 89 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRC------RAGMVY--M----AG-LVFAVGGFNG-------SLRVRTVDSYDPVKDQW 89 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCB------SCEEEE--E----TT-EEEEESCBCS-------SSBCCCEEEEETTTTEE
T ss_pred CcEEEEcCcCCcEeEcccCCcccc------cceEEE--E----CC-EEEEEeCcCC-------CccccceEEECCCCCce
Confidence 468899999999999987664321 111111 1 12 3555443221 12235689999999999
Q ss_pred EEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcceeeecCCCCCCCCCCceEEEE
Q 040444 186 TRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDFVLDVG 265 (409)
Q Consensus 186 r~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~~L~ 265 (409)
+.++.+|. .. ....++.++|.+|-+...... .....+..||+.+.+|..++..+... .....+
T Consensus 90 ~~~~~~p~----------~r--~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~ 152 (302)
T 2xn4_A 90 TSVANMRD----------RR--STLGAAVLNGLLYAVGGFDGS-TGLSSVEAYNIKSNEWFHVAPMNTRR----SSVGVG 152 (302)
T ss_dssp EEECCCSS----------CC--BSCEEEEETTEEEEEEEECSS-CEEEEEEEEETTTTEEEEECCCSSCC----BSCEEE
T ss_pred eeCCCCCc----------cc--cceEEEEECCEEEEEcCCCCC-ccCceEEEEeCCCCeEeecCCCCCcc----cCceEE
Confidence 99988772 21 234557789999998765432 12346899999999999984333122 122467
Q ss_pred EeCCeEEEEEecCCC----eEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEc------Cc
Q 040444 266 ALEGHMCLMCNYDLV----KVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVN------GE 335 (409)
Q Consensus 266 ~~~G~L~~~~~~~~~----~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~------~~ 335 (409)
..+|+|+++...... .-++|.++-. ...|++.-.++... .....+.. + +.|++... ..
T Consensus 153 ~~~~~iyv~GG~~~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r------~~~~~~~~---~-~~iyv~GG~~~~~~~~ 220 (302)
T 2xn4_A 153 VVGGLLYAVGGYDVASRQCLSTVECYNAT--TNEWTYIAEMSTRR------SGAGVGVL---N-NLLYAVGGHDGPLVRK 220 (302)
T ss_dssp EETTEEEEECCEETTTTEECCCEEEEETT--TTEEEEECCCSSCC------BSCEEEEE---T-TEEEEECCBSSSSBCC
T ss_pred EECCEEEEEeCCCCCCCccccEEEEEeCC--CCcEEECCCCcccc------ccccEEEE---C-CEEEEECCCCCCcccc
Confidence 789999998765321 3457777642 36799875433221 11222222 3 55665432 13
Q ss_pred EEEEEECCCCcEEEEE
Q 040444 336 KLVWYDWKRKKLKTVK 351 (409)
Q Consensus 336 ~l~~yd~~~~~~~~v~ 351 (409)
.+..||+++++|+.+.
T Consensus 221 ~~~~yd~~~~~W~~~~ 236 (302)
T 2xn4_A 221 SVEVYDPTTNAWRQVA 236 (302)
T ss_dssp CEEEEETTTTEEEEEC
T ss_pred eEEEEeCCCCCEeeCC
Confidence 5999999999999884
No 15
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=98.67 E-value=7.1e-07 Score=82.75 Aligned_cols=201 Identities=10% Similarity=0.077 Sum_probs=121.6
Q ss_pred CccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEEEEEcCCCc
Q 040444 105 DQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRS 184 (409)
Q Consensus 105 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~vyss~t~~ 184 (409)
.+.+.++||.|++|..+|+.|..+. ...... + ++ +++.++....... .......+++|+..+++
T Consensus 38 ~~~~~~~d~~~~~W~~~~~~p~~r~------~~~~~~--~----~~-~lyv~GG~~~~~~---~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 38 LSYLEAYNPSNGTWLRLADLQVPRS------GLAGCV--V----GG-LLYAVGGRNNSPD---GNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCB------SCEEEE--E----TT-EEEEECCEEEETT---EEEECCCEEEEETTTTE
T ss_pred cceEEEEcCCCCeEeECCCCCcccc------cceEEE--E----CC-EEEEECCCcCCCC---CCeecceEEEECCCCCe
Confidence 3468999999999999987664321 111111 1 12 3444443210000 01233568999999999
Q ss_pred eEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcceeeec-CCCCCCCCCCceEE
Q 040444 185 WTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLP-QPNYGAREKDFVLD 263 (409)
Q Consensus 185 Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~-lP~~~~~~~~~~~~ 263 (409)
|+.++.+|. .. ....++.++|.+|.+...... .....+..||+.+.+|..++ +|. .. ....
T Consensus 102 W~~~~~~p~----------~r--~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~~~~p~-~r----~~~~ 163 (308)
T 1zgk_A 102 WSPCAPMSV----------PR--NRIGVGVIDGHIYAVGGSHGC-IHHNSVERYEPERDEWHLVAPMLT-RR----IGVG 163 (308)
T ss_dssp EEECCCCSS----------CC--BTCEEEEETTEEEEECCEETT-EECCCEEEEETTTTEEEECCCCSS-CC----BSCE
T ss_pred EeECCCCCc----------Cc--cccEEEEECCEEEEEcCCCCC-cccccEEEECCCCCeEeECCCCCc-cc----cceE
Confidence 999987772 21 234557789999998653321 11234899999999999874 343 22 1124
Q ss_pred EEEeCCeEEEEEecCCC--eEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEc------Cc
Q 040444 264 VGALEGHMCLMCNYDLV--KVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVN------GE 335 (409)
Q Consensus 264 L~~~~G~L~~~~~~~~~--~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~------~~ 335 (409)
.+..+|+|+++...... .-++|.++-. ...|++.-.++... ...-.+.. + +.|++... ..
T Consensus 164 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r------~~~~~~~~---~-~~iyv~GG~~~~~~~~ 231 (308)
T 1zgk_A 164 VAVLNRLLYAVGGFDGTNRLNSAECYYPE--RNEWRMITAMNTIR------SGAGVCVL---H-NCIYAAGGYDGQDQLN 231 (308)
T ss_dssp EEEETTEEEEECCBCSSCBCCCEEEEETT--TTEEEECCCCSSCC------BSCEEEEE---T-TEEEEECCBCSSSBCC
T ss_pred EEEECCEEEEEeCCCCCCcCceEEEEeCC--CCeEeeCCCCCCcc------ccceEEEE---C-CEEEEEeCCCCCCccc
Confidence 56779999999765432 3456776642 36798765333211 11222222 3 55665432 13
Q ss_pred EEEEEECCCCcEEEEE
Q 040444 336 KLVWYDWKRKKLKTVK 351 (409)
Q Consensus 336 ~l~~yd~~~~~~~~v~ 351 (409)
.+..||+++++|+.+.
T Consensus 232 ~v~~yd~~~~~W~~~~ 247 (308)
T 1zgk_A 232 SVERYDVETETWTFVA 247 (308)
T ss_dssp CEEEEETTTTEEEECC
T ss_pred eEEEEeCCCCcEEECC
Confidence 5999999999999874
No 16
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=98.62 E-value=3.6e-06 Score=79.59 Aligned_cols=220 Identities=11% Similarity=0.010 Sum_probs=123.1
Q ss_pred cccceEEEee--CCccEEEEccc--ccceeccCCCC-CCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCC
Q 040444 94 SCNGLLALSN--SDQDIALFNPA--TRQLFKLPVEY-IDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLG 168 (409)
Q Consensus 94 sc~GLl~l~~--~~~~~~V~NP~--T~~~~~LP~~~-~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~ 168 (409)
..+|.|.+.. ..+.++++||. +++|..+|+.+ ..+. ...... ++ . +|+.++....... ..
T Consensus 17 ~~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~------~~~~~~--~~----~-~lyv~GG~~~~~~--~~ 81 (357)
T 2uvk_A 17 IDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRD------QATSAF--ID----G-NLYVFGGIGKNSE--GL 81 (357)
T ss_dssp EETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCB------SCEEEE--ET----T-EEEEECCEEECTT--SC
T ss_pred EECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCc------cceEEE--EC----C-EEEEEcCCCCCCC--cc
Confidence 3367665543 24579999998 49999998866 3211 111111 11 2 4555544311000 00
Q ss_pred cceecEEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCC-------------------
Q 040444 169 CFVEYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEF------------------- 229 (409)
Q Consensus 169 ~~~~~~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~------------------- 229 (409)
......+++|+..+++|+.+..+++. .. ....++.++|.+|.+.......
T Consensus 82 ~~~~~~v~~yd~~~~~W~~~~~~~p~---------~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~ 150 (357)
T 2uvk_A 82 TQVFNDVHKYNPKTNSWVKLMSHAPM---------GM--AGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAID 150 (357)
T ss_dssp EEECCCEEEEETTTTEEEECSCCCSS---------CC--SSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ceeeccEEEEeCCCCcEEECCCCCCc---------cc--ccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchh
Confidence 12345789999999999999865511 11 1233466999999987643110
Q ss_pred --------------CCccEEEEEECCCcceeee-cCCCCCCCCCCceEEEEEeCCeEEEEEecCC---CeEEEEEEeecC
Q 040444 230 --------------GIGNLIVAFDLGLEEFRLL-PQPNYGAREKDFVLDVGALEGHMCLMCNYDL---VKVDVWMMKEYG 291 (409)
Q Consensus 230 --------------~~~~~Il~fDl~~e~~~~i-~lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~---~~~~IW~l~~~~ 291 (409)
.....+..||+.+.+|+.+ ++|. .. . ....++..+|+|+++..... ..-++|.++-+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~~-~--~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~ 226 (357)
T 2uvk_A 151 KINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPW-YG-T--AGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTG 226 (357)
T ss_dssp HHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSS-CC-C--BSCEEEEETTEEEEECCEEETTEECCCEEEEECC-
T ss_pred hhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCC-CC-c--ccccEEEECCEEEEEeeecCCCcccCceEEEEecC
Confidence 0124699999999999987 3443 22 1 11256778999999875421 144677765211
Q ss_pred CCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcC-----------------------cEEEEEECCCCcEE
Q 040444 292 LKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNG-----------------------EKLVWYDWKRKKLK 348 (409)
Q Consensus 292 ~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~-----------------------~~l~~yd~~~~~~~ 348 (409)
....|+++..++.+. .....-.+.. + +.|++.... ..+..||+++++|+
T Consensus 227 ~~~~W~~~~~~~~~~----~~~~~~~~~~---~-~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~ 298 (357)
T 2uvk_A 227 NNLKWNKLAPVSSPD----GVAGGFAGIS---N-DSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWD 298 (357)
T ss_dssp --CEEEECCCSSTTT----CCBSCEEEEE---T-TEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CE
T ss_pred CCCcEEecCCCCCCc----ccccceEEEE---C-CEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCcee
Confidence 246798865443221 0111112222 3 556654220 24789999999999
Q ss_pred EEE
Q 040444 349 TVK 351 (409)
Q Consensus 349 ~v~ 351 (409)
++.
T Consensus 299 ~~~ 301 (357)
T 2uvk_A 299 KSG 301 (357)
T ss_dssp EEE
T ss_pred eCC
Confidence 985
No 17
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.60 E-value=2.1e-06 Score=83.33 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=39.7
Q ss_pred CCCcHH----HHHHHHhcCCCCceeEEEecccchhhhcCChhHHHHHHh
Q 040444 2 SKVPLD----VVTGTLYQLPVKTLLRYRCLSRPLCSIIDDPDFIKLQLN 46 (409)
Q Consensus 2 ~~LP~D----ll~eIL~rLP~ksL~R~r~VCK~W~~li~~~~F~~~~~~ 46 (409)
+.||+| |+..||+.|++++|+|+++|||+|+.++.++.+-+....
T Consensus 12 ~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~ 60 (435)
T 1p22_A 12 TALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIE 60 (435)
T ss_dssp HHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHH
T ss_pred HHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 469999 999999999999999999999999999998876655443
No 18
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=98.53 E-value=2e-05 Score=74.33 Aligned_cols=152 Identities=9% Similarity=-0.007 Sum_probs=87.8
Q ss_pred cEEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEEC--CCcceeeec-
Q 040444 173 YEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDL--GLEEFRLLP- 249 (409)
Q Consensus 173 ~~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl--~~e~~~~i~- 249 (409)
..+++|+..+++|+.+..+|. ... .....+.++|.+|.+............+..||+ .+.+|+.+.
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~----------~~~-~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~ 236 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPW----------YGT-AGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAP 236 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSS----------CCC-BSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCC
T ss_pred ccEEEEeCCCCcEEECCCCCC----------CCc-ccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCC
Confidence 589999999999999987762 111 124567789999988653211111234788887 889999863
Q ss_pred CCCCCCCCCCceEEEEEeCCeEEEEEecCC-------------------CeEEEEEEeecCCCCceeEEEEeecccccCC
Q 040444 250 QPNYGAREKDFVLDVGALEGHMCLMCNYDL-------------------VKVDVWMMKEYGLKESWSKMFSIDRCRSISS 310 (409)
Q Consensus 250 lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~-------------------~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~ 310 (409)
+|. .. .......+..+|+|+++..... ...++|+++-. ...|+++-.++....
T Consensus 237 ~~~-~~--~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r~--- 308 (357)
T 2uvk_A 237 VSS-PD--GVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWH--NGKWDKSGELSQGRA--- 308 (357)
T ss_dssp SST-TT--CCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-----CEEEEECSSCCB---
T ss_pred CCC-Cc--ccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecC--CCceeeCCCCCCCcc---
Confidence 332 21 1122256788999999876421 12456666642 367998765543321
Q ss_pred cceeeeEEEEeecCCCEEEE-EEcC------cEEEEEECCCCcEEEE
Q 040444 311 FRFLRPLICSNEDGGDKVLL-EVNG------EKLVWYDWKRKKLKTV 350 (409)
Q Consensus 311 ~~~~~p~~~~~~~~~~~ill-~~~~------~~l~~yd~~~~~~~~v 350 (409)
..- ++.- + +.|++ ...+ ..++.++++++++.+.
T Consensus 309 ---~~~-~~~~--~-~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 309 ---YGV-SLPW--N-NSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp ---SSE-EEEE--T-TEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred ---cce-eEEe--C-CEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 111 2222 3 44544 3211 2488899999998765
No 19
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=98.52 E-value=8.3e-06 Score=75.81 Aligned_cols=212 Identities=12% Similarity=0.143 Sum_probs=121.3
Q ss_pred ceEEEeeCCccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEE
Q 040444 97 GLLALSNSDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVK 176 (409)
Q Consensus 97 GLl~l~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~ 176 (409)
+.|++.. ...+.++||.|++|...|. +...++ .. ++... .++ +|+.++....+... ........++
T Consensus 16 ~~i~~~G-G~~~~~yd~~~~~W~~~~~-~~~~~r-----~~--~~~~~---~~~-~lyv~GG~~~~~~~-~~~~~~~~~~ 81 (318)
T 2woz_A 16 DLILLVN-DTAAVAYDPMENECYLTAL-AEQIPR-----NH--SSIVT---QQN-QVYVVGGLYVDEEN-KDQPLQSYFF 81 (318)
T ss_dssp EEEEEEC-SSEEEEEETTTTEEEEEEE-CTTSCS-----SE--EEEEC---SSS-CEEEEESSCC--------CCCBEEE
T ss_pred chhhhcc-ccceEEECCCCCceecccC-CccCCc-----cc--eEEEE---ECC-EEEEECCcccCccc-cCCCccccEE
Confidence 3444432 2357899999999998443 211111 11 11111 112 34444432110000 0001223488
Q ss_pred EEEcCCCceEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCC-CCCCccEEEEEECCCcceeeec-CCCCC
Q 040444 177 VFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRP-EFGIGNLIVAFDLGLEEFRLLP-QPNYG 254 (409)
Q Consensus 177 vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~~~Il~fDl~~e~~~~i~-lP~~~ 254 (409)
+|+..+++|+.++.+|. .. ....++.++|.+|-+..... .......+..||+.+.+|..++ +|. .
T Consensus 82 ~~d~~~~~W~~~~~~p~----------~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~ 148 (318)
T 2woz_A 82 QLDNVSSEWVGLPPLPS----------AR--CLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPI-K 148 (318)
T ss_dssp EEETTTTEEEECSCBSS----------CB--CSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSS-C
T ss_pred EEeCCCCcEEECCCCCc----------cc--cccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCC-c
Confidence 99999999999988772 21 23455778999999886542 1122356999999999999884 443 2
Q ss_pred CCCCCceEEEEEeCCeEEEEEecCC---CeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEE
Q 040444 255 AREKDFVLDVGALEGHMCLMCNYDL---VKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLE 331 (409)
Q Consensus 255 ~~~~~~~~~L~~~~G~L~~~~~~~~---~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~ 331 (409)
. .....+..+|+|+++..... ..-++|+++-. ...|++.-.++... .....++. + +.|++.
T Consensus 149 r----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r------~~~~~~~~---~-~~iyv~ 212 (318)
T 2woz_A 149 V----YGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPK--KGDWKDLAPMKTPR------SMFGVAIH---K-GKIVIA 212 (318)
T ss_dssp E----ESCEEEEETTEEEEECCEESSSCBCCCEEEEETT--TTEEEEECCCSSCC------BSCEEEEE---T-TEEEEE
T ss_pred c----cccEEEEECCEEEEEcCCCCCCCccceEEEEcCC--CCEEEECCCCCCCc------ccceEEEE---C-CEEEEE
Confidence 2 11245668999999876421 13467777742 36799875333221 11222332 3 455554
Q ss_pred Ec------CcEEEEEECCCCcEEEEE
Q 040444 332 VN------GEKLVWYDWKRKKLKTVK 351 (409)
Q Consensus 332 ~~------~~~l~~yd~~~~~~~~v~ 351 (409)
.. ...+..||+++++|+.+.
T Consensus 213 GG~~~~~~~~~~~~yd~~~~~W~~~~ 238 (318)
T 2woz_A 213 GGVTEDGLSASVEAFDLKTNKWEVMT 238 (318)
T ss_dssp EEEETTEEEEEEEEEETTTCCEEECC
T ss_pred cCcCCCCccceEEEEECCCCeEEECC
Confidence 21 134889999999999874
No 20
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=98.19 E-value=5.2e-05 Score=78.43 Aligned_cols=212 Identities=11% Similarity=0.061 Sum_probs=121.4
Q ss_pred ccceEEEeeC-----CccEEEEcccccceeccC-CCC---CCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCC
Q 040444 95 CNGLLALSNS-----DQDIALFNPATRQLFKLP-VEY---IDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDD 165 (409)
Q Consensus 95 c~GLl~l~~~-----~~~~~V~NP~T~~~~~LP-~~~---~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~ 165 (409)
.+|.|.+... .+.++++||.|++|..++ +.+ ...++ .......+ .. +. +++.++.... .
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R----~~hs~~~~---~~-~~-~lyv~GG~~~--~- 463 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVAR----MCHTFTTI---SR-NN-QLLLIGGRKA--P- 463 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCC----BSCEEEEE---TT-TT-EEEEECCBSS--T-
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccc----cceEEEEE---cc-CC-EEEEEcCCCC--C-
Confidence 4555544332 246899999999999998 522 11111 01111111 00 12 3555543322 0
Q ss_pred CCCcceecEEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEE-CCeEEEEeecCCCCCCccEEEEEECCCcc
Q 040444 166 NLGCFVEYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYV-NGVVHWVSPRRPEFGIGNLIVAFDLGLEE 244 (409)
Q Consensus 166 ~~~~~~~~~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~-~G~lywl~~~~~~~~~~~~Il~fDl~~e~ 244 (409)
......+++|+..+++|+.++.+|. .. ....++.+ +|.+|-+....... .+..||+.+.+
T Consensus 464 ---~~~~~dv~~yd~~t~~W~~~~~~p~----------~R--~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~ 524 (695)
T 2zwa_A 464 ---HQGLSDNWIFDMKTREWSMIKSLSH----------TR--FRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEI 524 (695)
T ss_dssp ---TCBCCCCEEEETTTTEEEECCCCSB----------CC--BSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTE
T ss_pred ---CCccccEEEEeCCCCcEEECCCCCC----------Cc--ccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCc
Confidence 1123468999999999999988772 21 23344554 99999987654321 49999999999
Q ss_pred eeeec----CCCCCCCCCCceEEEEEeC---CeEEEEEecCC----CeEEEEEEeecCCCCc------eeEEEEeecccc
Q 040444 245 FRLLP----QPNYGAREKDFVLDVGALE---GHMCLMCNYDL----VKVDVWMMKEYGLKES------WSKMFSIDRCRS 307 (409)
Q Consensus 245 ~~~i~----lP~~~~~~~~~~~~L~~~~---G~L~~~~~~~~----~~~~IW~l~~~~~~~~------W~~~~~I~~~~~ 307 (409)
|..++ +|. .. ... ..+.++ |+|+++..... ..-++|+++-.. .. |+++...+...
T Consensus 525 W~~~~~~g~~p~-~r--~~~--~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~--~~w~~~~~W~~~~~~p~~~- 596 (695)
T 2zwa_A 525 FKDVTPKDEFFQ-NS--LVS--AGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA--ENATEPITVIKKLQHPLFQ- 596 (695)
T ss_dssp EEECCCSSGGGG-SC--CBS--CEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT--TCSSCCEEEEEEEECGGGC-
T ss_pred eEEccCCCCCCC-cc--cce--eEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC--CccccceEEEEcCCCCCCC-
Confidence 99886 443 22 111 223333 88999887522 134667666422 34 87776532211
Q ss_pred cCCcceeeeEEEEeecCCCEEEEEEc---------CcEEEEEECCCCcEEEEEE
Q 040444 308 ISSFRFLRPLICSNEDGGDKVLLEVN---------GEKLVWYDWKRKKLKTVKI 352 (409)
Q Consensus 308 ~~~~~~~~p~~~~~~~~~~~ill~~~---------~~~l~~yd~~~~~~~~v~~ 352 (409)
+.....++.. + +.|++..+ ...+..||+++++|+.+.+
T Consensus 597 ----R~~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~ 643 (695)
T 2zwa_A 597 ----RYGSQIKYIT--P-RKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPI 643 (695)
T ss_dssp ----CBSCEEEEEE--T-TEEEEECCBCSSCCCCTTTSEEEEETTTTEEEECCC
T ss_pred ----cccceEEEeC--C-CEEEEECCccCCCCCCCCCeEEEEECCCCeEEEeec
Confidence 1112223332 2 45555422 2349999999999996544
No 21
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.77 E-value=1.9e-06 Score=77.72 Aligned_cols=47 Identities=19% Similarity=0.218 Sum_probs=43.9
Q ss_pred CCCcHHHHHHHHhcCCCCceeEEEecccchhhhcCChhHHHHHHhcc
Q 040444 2 SKVPLDVVTGTLYQLPVKTLLRYRCLSRPLCSIIDDPDFIKLQLNNS 48 (409)
Q Consensus 2 ~~LP~Dll~eIL~rLP~ksL~R~r~VCK~W~~li~~~~F~~~~~~~~ 48 (409)
++||+|++..||+.|++++|+|+.+|||+|+.+.+++..-+.+..+.
T Consensus 6 ~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd 52 (312)
T 3l2o_B 6 TRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRD 52 (312)
T ss_dssp HHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSS
T ss_pred HhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhcc
Confidence 47999999999999999999999999999999999999988887765
No 22
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.55 E-value=0.00084 Score=68.84 Aligned_cols=109 Identities=8% Similarity=-0.021 Sum_probs=69.4
Q ss_pred cEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEEEEEcCCCceE
Q 040444 107 DIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRSWT 186 (409)
Q Consensus 107 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~vyss~t~~Wr 186 (409)
.+.++||.|++|..++..+..+.. ......+..| =+++.++... ...+++|+..+++|.
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~-----~~~~~~~~~~-----g~lyv~GG~~-----------~~~v~~yd~~t~~W~ 278 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDM-----FCPGISMDGN-----GQIVVTGGND-----------AKKTSLYDSSSDSWI 278 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCC-----SSCEEEECTT-----SCEEEECSSS-----------TTCEEEEEGGGTEEE
T ss_pred EEEEEeCCCCcEEeCcccCCCCCC-----ccccccCCCC-----CCEEEeCCCC-----------CCceEEecCcCCcee
Confidence 578999999999999876543211 1111121111 1355544221 126899999999999
Q ss_pred EccccCcccccceeeeeeeeecccceEEE-CCeEEEEeecCCCCCCccEEEEEECCCcceeee
Q 040444 187 RVKKLPNYLRFMFQFYFHLLHRRGYGVYV-NGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLL 248 (409)
Q Consensus 187 ~~~~~p~~~~~~~~~~~~~~~~~~~~v~~-~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i 248 (409)
.+..+|. .. ....++.+ +|.+|-+............+..||+.+.+|..+
T Consensus 279 ~~~~~~~----------~R--~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~ 329 (656)
T 1k3i_A 279 PGPDMQV----------AR--GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL 329 (656)
T ss_dssp ECCCCSS----------CC--SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE
T ss_pred ECCCCCc----------cc--cccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeC
Confidence 9987772 21 12344666 999999887322211234589999999999986
No 23
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=97.48 E-value=0.0014 Score=67.63 Aligned_cols=161 Identities=9% Similarity=0.057 Sum_probs=96.9
Q ss_pred ecEEEEEEcCCCceEEcc-ccCcccccceeeeeeeeecccceEEE--CCeEEEEeecCCCCCCccEEEEEECCCcceeee
Q 040444 172 EYEVKVFSLKNRSWTRVK-KLPNYLRFMFQFYFHLLHRRGYGVYV--NGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLL 248 (409)
Q Consensus 172 ~~~~~vyss~t~~Wr~~~-~~p~~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i 248 (409)
...+++|+..+++|..+. .+|..... ... ....++.+ +|.+|.+............+..||+.+.+|..+
T Consensus 411 ~~~v~~yd~~~~~W~~~~~~~p~~~~p-----~~R--~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~ 483 (695)
T 2zwa_A 411 VNEILQLSIHYDKIDMKNIEVSSSEVP-----VAR--MCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMI 483 (695)
T ss_dssp CCCEEEEEECSSCEEEEECCCCCSCCC-----CCC--BSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEEC
T ss_pred cCcEEEEECCCCeEEEeccCCCCCCCC-----ccc--cceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEEC
Confidence 346889999999999987 42200000 111 23456777 999999876543221233589999999999987
Q ss_pred c-CCCCCCCCCCceEEEEEe-CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeee-EEEEeecCC
Q 040444 249 P-QPNYGAREKDFVLDVGAL-EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRP-LICSNEDGG 325 (409)
Q Consensus 249 ~-lP~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p-~~~~~~~~~ 325 (409)
. +|. +. .....+.. +|+|+++....... ++|+.+-. ...|+....... .. ..+.... +.+.. +.
T Consensus 484 ~~~p~-~R----~~h~~~~~~~~~iyv~GG~~~~~-~v~~yd~~--t~~W~~~~~~g~--~p-~~r~~~~a~v~~~--~~ 550 (695)
T 2zwa_A 484 KSLSH-TR----FRHSACSLPDGNVLILGGVTEGP-AMLLYNVT--EEIFKDVTPKDE--FF-QNSLVSAGLEFDP--VS 550 (695)
T ss_dssp CCCSB-CC----BSCEEEECTTSCEEEECCBCSSC-SEEEEETT--TTEEEECCCSSG--GG-GSCCBSCEEEEET--TT
T ss_pred CCCCC-Cc----ccceEEEEcCCEEEEECCCCCCC-CEEEEECC--CCceEEccCCCC--CC-CcccceeEEEEeC--CC
Confidence 4 333 22 12245664 99999998775445 78887752 367987654211 00 0011111 22222 32
Q ss_pred CEEEEEEc--------CcEEEEEECCCCc------EEEEEE
Q 040444 326 DKVLLEVN--------GEKLVWYDWKRKK------LKTVKI 352 (409)
Q Consensus 326 ~~ill~~~--------~~~l~~yd~~~~~------~~~v~~ 352 (409)
+.|++-.+ ...+..||+++++ |+.+.-
T Consensus 551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~ 591 (695)
T 2zwa_A 551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQ 591 (695)
T ss_dssp TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEE
T ss_pred CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCC
Confidence 56665432 1359999999999 777743
No 24
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.23 E-value=0.0028 Score=64.95 Aligned_cols=203 Identities=6% Similarity=-0.075 Sum_probs=106.9
Q ss_pred EEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEEEEEcCCCceEE
Q 040444 108 IALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRSWTR 187 (409)
Q Consensus 108 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~vyss~t~~Wr~ 187 (409)
+...+|.+++|..+++.|.. .. ..+ +.+. +=||+.++....+..+ ........+++|+..+++|+.
T Consensus 168 ~~~~dp~~~~W~~~~~~P~~--------~~-~~a--v~~~--~g~l~v~GG~~~~~~~-~~~~~~~~~~~yd~~t~~w~~ 233 (656)
T 1k3i_A 168 YTAPQPGLGRWGPTIDLPIV--------PA-AAA--IEPT--SGRVLMWSSYRNDAFG-GSPGGITLTSSWDPSTGIVSD 233 (656)
T ss_dssp CCCCCTTSCEEEEEEECSSC--------CS-EEE--EETT--TTEEEEEEECCCTTTC-SCCCSEEEEEEECTTTCCBCC
T ss_pred cccCCCCCCeeeeeccCCCC--------ce-eEE--EEec--CCEEEEEecccccccc-cCCCCeEEEEEEeCCCCcEEe
Confidence 44468999999988766531 11 111 2221 1245555543221100 001123468999999999998
Q ss_pred ccccCcccccceeeeeeeeeccc--ceEEECCeEEEEeecCCCCCCccEEEEEECCCcceeeec-CCCCCCCCCCceEEE
Q 040444 188 VKKLPNYLRFMFQFYFHLLHRRG--YGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLP-QPNYGAREKDFVLDV 264 (409)
Q Consensus 188 ~~~~p~~~~~~~~~~~~~~~~~~--~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~-lP~~~~~~~~~~~~L 264 (409)
+..+|. ... ... .++..+|.+|-+...... .+..||+.+.+|..++ +|. .. .....
T Consensus 234 ~~~~~~----------~~~-~~~~~~~~~~~g~lyv~GG~~~~-----~v~~yd~~t~~W~~~~~~~~-~R----~~~s~ 292 (656)
T 1k3i_A 234 RTVTVT----------KHD-MFCPGISMDGNGQIVVTGGNDAK-----KTSLYDSSSDSWIPGPDMQV-AR----GYQSS 292 (656)
T ss_dssp CEEEEC----------SCC-CSSCEEEECTTSCEEEECSSSTT-----CEEEEEGGGTEEEECCCCSS-CC----SSCEE
T ss_pred CcccCC----------CCC-CccccccCCCCCCEEEeCCCCCC-----ceEEecCcCCceeECCCCCc-cc----cccce
Confidence 876551 111 112 223468999988764432 4999999999999874 232 22 22356
Q ss_pred EEe-CCeEEEEEec-CC--CeEEEEEEeecCCCCceeEEEEeecccccCC-c-----ceeeeEEEEeecCCCEEEEEEcC
Q 040444 265 GAL-EGHMCLMCNY-DL--VKVDVWMMKEYGLKESWSKMFSIDRCRSISS-F-----RFLRPLICSNEDGGDKVLLEVNG 334 (409)
Q Consensus 265 ~~~-~G~L~~~~~~-~~--~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~-~-----~~~~p~~~~~~~~~~~ill~~~~ 334 (409)
+.+ +|+|+++... .. ..-++|+.+- ....|+.+-.......... . ..-....+.. .+ +.++.....
T Consensus 293 ~~~~dg~iyv~GG~~~~~~~~~~~e~yd~--~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg-~~-g~~~~~~~~ 368 (656)
T 1k3i_A 293 ATMSDGRVFTIGGSWSGGVFEKNGEVYSP--SSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGW-KK-GSVFQAGPS 368 (656)
T ss_dssp EECTTSCEEEECCCCCSSSCCCCEEEEET--TTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEEC-GG-GCEEECCSS
T ss_pred EEecCCeEEEEeCcccCCcccccceEeCC--CCCcceeCCCccccccccccccceeecCCceEEEEC-CC-CcEEEecCc
Confidence 777 9999999873 21 1123344432 1367987522111111000 0 0001112211 12 233332233
Q ss_pred cEEEEEECCCCcEEE
Q 040444 335 EKLVWYDWKRKKLKT 349 (409)
Q Consensus 335 ~~l~~yd~~~~~~~~ 349 (409)
..+..||++++.|..
T Consensus 369 ~~v~~yd~~~~~w~~ 383 (656)
T 1k3i_A 369 TAMNWYYTSGSGDVK 383 (656)
T ss_dssp SEEEEEECSTTCEEE
T ss_pred cceeeeecCCcceee
Confidence 568999999998754
No 25
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.13 E-value=5.4e-05 Score=70.65 Aligned_cols=40 Identities=15% Similarity=0.290 Sum_probs=36.7
Q ss_pred CCCCcHHHHHHHHhcCCCCceeEEEecccchhhhcCChhH
Q 040444 1 MSKVPLDVVTGTLYQLPVKTLLRYRCLSRPLCSIIDDPDF 40 (409)
Q Consensus 1 m~~LP~Dll~eIL~rLP~ksL~R~r~VCK~W~~li~~~~F 40 (409)
+++||+|++.+||.+|+.+++.+++.|||+|+.++.++..
T Consensus 9 ~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~ 48 (336)
T 2ast_B 9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48 (336)
T ss_dssp SSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTT
T ss_pred hhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchh
Confidence 3689999999999999999999999999999999877653
No 26
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.40 E-value=0.00035 Score=70.43 Aligned_cols=34 Identities=12% Similarity=0.088 Sum_probs=29.5
Q ss_pred CCCCcHHHHHHHHhcCC-CCceeEEEecccchhhh
Q 040444 1 MSKVPLDVVTGTLYQLP-VKTLLRYRCLSRPLCSI 34 (409)
Q Consensus 1 m~~LP~Dll~eIL~rLP-~ksL~R~r~VCK~W~~l 34 (409)
++.||+|++.+||++|| .+++.+++.|||+|+.+
T Consensus 6 ~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 6 ALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred hhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 35899999999999999 99999999999999988
No 27
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=95.68 E-value=0.0012 Score=66.49 Aligned_cols=33 Identities=15% Similarity=0.039 Sum_probs=31.2
Q ss_pred CCCcHHHHHHHHhcC-CCCceeEEEecccchhhh
Q 040444 2 SKVPLDVVTGTLYQL-PVKTLLRYRCLSRPLCSI 34 (409)
Q Consensus 2 ~~LP~Dll~eIL~rL-P~ksL~R~r~VCK~W~~l 34 (409)
+.||+|++.+||++| |.+++.+++.|||+|+.+
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 369999999999999 899999999999999987
No 28
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=94.97 E-value=2.1 Score=38.99 Aligned_cols=69 Identities=9% Similarity=0.146 Sum_probs=42.6
Q ss_pred CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecC---CCEEEEEEcCcEEEEEECCC
Q 040444 268 EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDG---GDKVLLEVNGEKLVWYDWKR 344 (409)
Q Consensus 268 ~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~---~~~ill~~~~~~l~~yd~~~ 344 (409)
+|.+.++...+ ..+.||-+... ...|.....+.... ....-+.+.+ + +..++....++.+..||+++
T Consensus 171 ~~~~l~~~~~d-g~i~i~d~~~~--~~~~~~~~~~~~h~-----~~v~~~~~sp--~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 171 ESRKFVTGGAD-NLVKIWKYNSD--AQTYVLESTLEGHS-----DWVRDVAWSP--TVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp TTCEEEEEETT-SCEEEEEEETT--TTEEEEEEEECCCS-----SCEEEEEECC--CCSSSEEEEEEETTSCEEEEEESS
T ss_pred CCCEEEEEeCC-CeEEEEEecCC--CcceeeEEEEeccc-----CcEeEEEECC--CCCCCCeEEEEeCCCEEEEEeCCC
Confidence 46665555544 48999999852 35566665554321 1234466666 6 45555555567799999987
Q ss_pred Cc
Q 040444 345 KK 346 (409)
Q Consensus 345 ~~ 346 (409)
+.
T Consensus 241 ~~ 242 (379)
T 3jrp_A 241 EQ 242 (379)
T ss_dssp TT
T ss_pred CC
Confidence 63
No 29
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=93.37 E-value=3.9 Score=42.09 Aligned_cols=67 Identities=7% Similarity=0.112 Sum_probs=41.1
Q ss_pred CeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecC---CCEEEEEEcCcEEEEEECCCC
Q 040444 269 GHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDG---GDKVLLEVNGEKLVWYDWKRK 345 (409)
Q Consensus 269 G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~---~~~ill~~~~~~l~~yd~~~~ 345 (409)
|.+.++...+ ..+.||-+... ...+.....+... .....-+.+.+ + +..++....++.+..||+.++
T Consensus 170 ~~~l~sgs~d-g~I~iwd~~~~--~~~~~~~~~~~~h-----~~~V~~l~~sp--~~~~~~~l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 170 SRKFVTGGAD-NLVKIWKYNSD--AQTYVLESTLEGH-----SDWVRDVAWSP--TVLLRSYLASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp GCCEEEEETT-SCEEEEEEETT--TTEEEEEEEECCC-----SSCEEEEEECC--CCSSSEEEEEEESSSCEEEEEESSS
T ss_pred CCEEEEEECC-CeEEEEeccCC--cccceeeeeecCC-----CCcEEEEEecc--CCCCCCEEEEEecCCEEEEecCCCC
Confidence 5555555543 48999999863 2456655555422 11244466666 5 455555555677999999886
No 30
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=93.13 E-value=2.1 Score=40.64 Aligned_cols=197 Identities=12% Similarity=0.062 Sum_probs=94.1
Q ss_pred eEEEeeCCccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEEE
Q 040444 98 LLALSNSDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKV 177 (409)
Q Consensus 98 Ll~l~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~v 177 (409)
+|.....++.+.|||..+++...+-..... .....++.|.|..+.+-+ ... .+-.+.+
T Consensus 134 ~lasGs~dg~i~lWd~~~~~~~~~~~~~gH--------~~~V~~l~f~p~~~~~l~-s~s-------------~D~~v~i 191 (435)
T 4e54_B 134 TVAVGSKGGDIMLWNFGIKDKPTFIKGIGA--------GGSITGLKFNPLNTNQFY-ASS-------------MEGTTRL 191 (435)
T ss_dssp CEEEEETTSCEEEECSSCCSCCEEECCCSS--------SCCCCEEEECSSCTTEEE-EEC-------------SSSCEEE
T ss_pred EEEEEeCCCEEEEEECCCCCceeEEEccCC--------CCCEEEEEEeCCCCCEEE-EEe-------------CCCEEEE
Confidence 555555677899999988765433221111 122345666665444322 211 1235778
Q ss_pred EEcCCCceEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcceeeecCCCCCCCC
Q 040444 178 FSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGARE 257 (409)
Q Consensus 178 yss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~ 257 (409)
++..++.-+........ .. ....-...-+|.+......+. .|..+|+.......+..-.
T Consensus 192 wd~~~~~~~~~~~~~~~---------~~-~~~~~~~~~~~~~l~~g~~dg------~i~~wd~~~~~~~~~~~h~----- 250 (435)
T 4e54_B 192 QDFKGNILRVFASSDTI---------NI-WFCSLDVSASSRMVVTGDNVG------NVILLNMDGKELWNLRMHK----- 250 (435)
T ss_dssp EETTSCEEEEEECCSSC---------SC-CCCCEEEETTTTEEEEECSSS------BEEEEESSSCBCCCSBCCS-----
T ss_pred eeccCCceeEEeccCCC---------Cc-cEEEEEECCCCCEEEEEeCCC------cEeeeccCcceeEEEeccc-----
Confidence 88877655443321100 00 000111222444433333322 3888898765443322211
Q ss_pred CCceEEEEEe-CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcE
Q 040444 258 KDFVLDVGAL-EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEK 336 (409)
Q Consensus 258 ~~~~~~L~~~-~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~ 336 (409)
... ..+... +|.-.++....+..+.||-+........... . .+....+.-+++.+ +|..|+....++.
T Consensus 251 ~~v-~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~-----~---~~h~~~v~~~~~sp--dg~~l~s~~~D~~ 319 (435)
T 4e54_B 251 KKV-THVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLY-----S---LPHRHPVNAACFSP--DGARLLTTDQKSE 319 (435)
T ss_dssp SCE-EEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSB-----C---CBCSSCEEECCBCT--TSSEEEEEESSSC
T ss_pred ceE-EeeeecCCCceEEEEecCcceeeEEecccccccceEEE-----e---eeccccccceeECC--CCCeeEEEcCCCE
Confidence 111 122222 3443333333344899997764321111100 0 00011233355666 7777776667777
Q ss_pred EEEEECCCCcEE
Q 040444 337 LVWYDWKRKKLK 348 (409)
Q Consensus 337 l~~yd~~~~~~~ 348 (409)
+..||+++....
T Consensus 320 i~iwd~~~~~~~ 331 (435)
T 4e54_B 320 IRVYSASQWDCP 331 (435)
T ss_dssp EEEEESSSSSSE
T ss_pred EEEEECCCCccc
Confidence 999999887643
No 31
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=92.02 E-value=5.8 Score=34.64 Aligned_cols=117 Identities=9% Similarity=0.052 Sum_probs=75.2
Q ss_pred cceE-EECCeEEEEeecCCCCCCccEEEEEECCCcce-eeecCCCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEEE
Q 040444 210 GYGV-YVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEF-RLLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMM 287 (409)
Q Consensus 210 ~~~v-~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~-~~i~lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l 287 (409)
.+++ +.+|.+|--+.... ...|..+|+.+.+. ..+++|. .. +...+...+++|+++..... .+|+.
T Consensus 23 tqGL~~~~~~LyestG~~g----~S~v~~vD~~tgkv~~~~~l~~-~~----fgeGi~~~~~~ly~ltw~~~---~v~v~ 90 (243)
T 3mbr_X 23 TEGLFYLRGHLYESTGETG----RSSVRKVDLETGRILQRAEVPP-PY----FGAGIVAWRDRLIQLTWRNH---EGFVY 90 (243)
T ss_dssp EEEEEEETTEEEEEECCTT----SCEEEEEETTTCCEEEEEECCT-TC----CEEEEEEETTEEEEEESSSS---EEEEE
T ss_pred cccEEEECCEEEEECCCCC----CceEEEEECCCCCEEEEEeCCC-Cc----ceeEEEEeCCEEEEEEeeCC---EEEEE
Confidence 3444 45567665443321 24699999998765 5578886 22 33356677899999865433 45555
Q ss_pred eecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcE-EEEEE
Q 040444 288 KEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKL-KTVKI 352 (409)
Q Consensus 288 ~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~-~~v~~ 352 (409)
+- ..-.++.+|+... .+.++.. +++.+++......|..+|++|.+. +.|.+
T Consensus 91 D~----~tl~~~~ti~~~~--------~Gwglt~--dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V 142 (243)
T 3mbr_X 91 DL----ATLTPRARFRYPG--------EGWALTS--DDSHLYMSDGTAVIRKLDPDTLQQVGSIKV 142 (243)
T ss_dssp ET----TTTEEEEEEECSS--------CCCEEEE--CSSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred EC----CcCcEEEEEeCCC--------CceEEee--CCCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence 53 2345677777642 2456666 778888876667899999999775 44554
No 32
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=91.70 E-value=2.4 Score=38.87 Aligned_cols=103 Identities=11% Similarity=0.005 Sum_probs=49.5
Q ss_pred EEEEECCCcc----eeeecCCCCCCCCCCceEEEEEe-CCeEEEEEecCCCeEEEEEEeecCC-----CCceeEE---EE
Q 040444 235 IVAFDLGLEE----FRLLPQPNYGAREKDFVLDVGAL-EGHMCLMCNYDLVKVDVWMMKEYGL-----KESWSKM---FS 301 (409)
Q Consensus 235 Il~fDl~~e~----~~~i~lP~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~~IW~l~~~~~-----~~~W~~~---~~ 301 (409)
|..+|+.+.+ ...+..|. . ... ..+.-. +|.+.+.... ...+.||-+...+. ...|... ..
T Consensus 124 i~iwd~~~~~~~~~~~~~~~~h-~---~~v-~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 197 (377)
T 3dwl_C 124 ISVCYFEQENDWWVSKHLKRPL-R---STI-LSLDWHPNNVLLAAGCA-DRKAYVLSAYVRDVDAKPEASVWGSRLPFNT 197 (377)
T ss_dssp EEECCC-----CCCCEEECSSC-C---SCE-EEEEECTTSSEEEEEES-SSCEEEEEECCSSCC-CCCSCSSCSCCCEEE
T ss_pred EEEEEECCcccceeeeEeeccc-C---CCe-EEEEEcCCCCEEEEEeC-CCEEEEEEEEecccCCCccccccccccchhh
Confidence 7888887764 23333322 1 111 123322 5555454444 34899999863211 1223211 10
Q ss_pred eecccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcE
Q 040444 302 IDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKL 347 (409)
Q Consensus 302 I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~ 347 (409)
+.. .+ .......-+.+.+ ++..|+....++.+..||+++++.
T Consensus 198 ~~~-~~-~~~~~v~~~~~sp--~~~~l~~~~~d~~i~iwd~~~~~~ 239 (377)
T 3dwl_C 198 VCA-EY-PSGGWVHAVGFSP--SGNALAYAGHDSSVTIAYPSAPEQ 239 (377)
T ss_dssp EEE-CC-CCSSSEEEEEECT--TSSCEEEEETTTEEC-CEECSTTS
T ss_pred hhh-cc-cCCceEEEEEECC--CCCEEEEEeCCCcEEEEECCCCCC
Confidence 100 00 1112244566777 777677677777899999988764
No 33
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=91.04 E-value=8.6 Score=34.76 Aligned_cols=210 Identities=10% Similarity=-0.008 Sum_probs=102.4
Q ss_pred EEecccceEEEee-CCccEEEEccccccee-ccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCC
Q 040444 91 VFGSCNGLLALSN-SDQDIALFNPATRQLF-KLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLG 168 (409)
Q Consensus 91 ~~~sc~GLl~l~~-~~~~~~V~NP~T~~~~-~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~ 168 (409)
+.-+.+|.+.+.+ ....+.++||.|++.. .++....... .....++.++ +.. ++... .
T Consensus 89 i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~------~~~p~~i~~~---~~~-lyv~~-~--------- 148 (328)
T 3dsm_A 89 IHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDME------SGSTEQMVQY---GKY-VYVNC-W--------- 148 (328)
T ss_dssp EEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTT------TCBCCCEEEE---TTE-EEEEE-C---------
T ss_pred EEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCcccc------CCCcceEEEE---CCE-EEEEc-C---------
Confidence 3344577776665 5678999999998765 4543221000 0011223333 222 22221 1
Q ss_pred cceecEEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCC----CccEEEEEECCCcc
Q 040444 169 CFVEYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFG----IGNLIVAFDLGLEE 244 (409)
Q Consensus 169 ~~~~~~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~----~~~~Il~fDl~~e~ 244 (409)
.....+.+++..++.....-.... . ...-.+.-+|.+|.......... ....|..+|..+.+
T Consensus 149 -~~~~~v~viD~~t~~~~~~i~~g~---------~----p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~ 214 (328)
T 3dsm_A 149 -SYQNRILKIDTETDKVVDELTIGI---------Q----PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT 214 (328)
T ss_dssp -TTCCEEEEEETTTTEEEEEEECSS---------C----BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE
T ss_pred -CCCCEEEEEECCCCeEEEEEEcCC---------C----ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe
Confidence 012367899988876543211110 0 01111223588665554321000 01469999999877
Q ss_pred ee-eecCCCCCCCCCCceEEEEEe--CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEe
Q 040444 245 FR-LLPQPNYGAREKDFVLDVGAL--EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSN 321 (409)
Q Consensus 245 ~~-~i~lP~~~~~~~~~~~~L~~~--~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~ 321 (409)
.. .+.+|. +. .. ..+... ++.|+++.. .||+++-.. ........+.. ......-+++.+
T Consensus 215 v~~~~~~~~-g~--~p--~~la~~~d~~~lyv~~~------~v~~~d~~t--~~~~~~~~~~~-----~~~~p~gi~vdp 276 (328)
T 3dsm_A 215 VEKQFKFKL-GD--WP--SEVQLNGTRDTLYWINN------DIWRMPVEA--DRVPVRPFLEF-----RDTKYYGLTVNP 276 (328)
T ss_dssp EEEEEECCT-TC--CC--EEEEECTTSCEEEEESS------SEEEEETTC--SSCCSSCSBCC-----CSSCEEEEEECT
T ss_pred EEEEEecCC-CC--Cc--eeEEEecCCCEEEEEcc------EEEEEECCC--CceeeeeeecC-----CCCceEEEEEcC
Confidence 65 467765 22 11 134444 344444321 566666322 11110000110 011223355554
Q ss_pred ecCCCEEEEEE-----cCcEEEEEECCCCcEEEEEEeC
Q 040444 322 EDGGDKVLLEV-----NGEKLVWYDWKRKKLKTVKIDG 354 (409)
Q Consensus 322 ~~~~~~ill~~-----~~~~l~~yd~~~~~~~~v~~~~ 354 (409)
+++.|++.. ....|..||++.+.+..+....
T Consensus 277 --~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~~G~ 312 (328)
T 3dsm_A 277 --NNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFYVGI 312 (328)
T ss_dssp --TTCCEEEEECTTSSSEEEEEEECTTCCEEEEEEEEE
T ss_pred --CCCeEEEEcccccccCCEEEEECCCCCEEEEEEecc
Confidence 567787775 2456999999976677776643
No 34
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=90.14 E-value=7.6 Score=34.31 Aligned_cols=113 Identities=9% Similarity=0.017 Sum_probs=71.6
Q ss_pred EECCeEEEEeecCCCCCCccEEEEEECCCcce-eeecCCCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEEEeecCC
Q 040444 214 YVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEF-RLLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGL 292 (409)
Q Consensus 214 ~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~-~~i~lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~ 292 (409)
+.+|.||--+.... ...|..+|+.+.+. ..+++|+ .. |...+...+++|+++..... .+|+.+-
T Consensus 50 ~~~~~LyestG~~g----~S~v~~vD~~Tgkv~~~~~l~~-~~----FgeGit~~g~~ly~ltw~~~---~v~v~D~--- 114 (262)
T 3nol_A 50 YRNGYFYESTGLNG----RSSIRKVDIESGKTLQQIELGK-RY----FGEGISDWKDKIVGLTWKNG---LGFVWNI--- 114 (262)
T ss_dssp EETTEEEEEEEETT----EEEEEEECTTTCCEEEEEECCT-TC----CEEEEEEETTEEEEEESSSS---EEEEEET---
T ss_pred EECCEEEEECCCCC----CceEEEEECCCCcEEEEEecCC-cc----ceeEEEEeCCEEEEEEeeCC---EEEEEEC---
Confidence 45777776554432 23699999998765 5577776 22 33356777899988865433 4455553
Q ss_pred CCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcE-EEEEE
Q 040444 293 KESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKL-KTVKI 352 (409)
Q Consensus 293 ~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~-~~v~~ 352 (409)
..-..+.+|+... .+.++.. +++.+++......|..+|++|.+. +.|.+
T Consensus 115 -~t~~~~~ti~~~~--------eG~glt~--dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V 164 (262)
T 3nol_A 115 -RNLRQVRSFNYDG--------EGWGLTH--NDQYLIMSDGTPVLRFLDPESLTPVRTITV 164 (262)
T ss_dssp -TTCCEEEEEECSS--------CCCCEEE--CSSCEEECCSSSEEEEECTTTCSEEEEEEC
T ss_pred -ccCcEEEEEECCC--------CceEEec--CCCEEEEECCCCeEEEEcCCCCeEEEEEEe
Confidence 2245666676532 2345555 677777765566799999998765 44554
No 35
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=90.02 E-value=11 Score=34.37 Aligned_cols=196 Identities=9% Similarity=0.037 Sum_probs=97.1
Q ss_pred eEEEeeCCccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEEE
Q 040444 98 LLALSNSDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKV 177 (409)
Q Consensus 98 Ll~l~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~v 177 (409)
+|+....++.+.|||..+++....-..... .....++.+.+..+.+- .... ..-.+.+
T Consensus 88 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h--------~~~v~~~~~~~~~~~~l--~s~~------------~d~~i~i 145 (383)
T 3ei3_B 88 TVAVGSKGGDIILWDYDVQNKTSFIQGMGP--------GDAITGMKFNQFNTNQL--FVSS------------IRGATTL 145 (383)
T ss_dssp EEEEEEBTSCEEEEETTSTTCEEEECCCST--------TCBEEEEEEETTEEEEE--EEEE------------TTTEEEE
T ss_pred EEEEEcCCCeEEEEeCCCcccceeeecCCc--------CCceeEEEeCCCCCCEE--EEEe------------CCCEEEE
Confidence 555555567889999988776554321111 22345566665322222 2221 1236778
Q ss_pred EEcCCCceEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcceeeecCCCCCCCC
Q 040444 178 FSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGARE 257 (409)
Q Consensus 178 yss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~ 257 (409)
++..+...+......... ... ..-...-+|.+...+..+ ..|..+|+..+....+.... .
T Consensus 146 wd~~~~~~~~~~~~~~~~-------~~v---~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~h~-~--- 205 (383)
T 3ei3_B 146 RDFSGSVIQVFAKTDSWD-------YWY---CCVDVSVSRQMLATGDST------GRLLLLGLDGHEIFKEKLHK-A--- 205 (383)
T ss_dssp EETTSCEEEEEECCCCSS-------CCE---EEEEEETTTTEEEEEETT------SEEEEEETTSCEEEEEECSS-S---
T ss_pred EECCCCceEEEeccCCCC-------CCe---EEEEECCCCCEEEEECCC------CCEEEEECCCCEEEEeccCC-C---
Confidence 888876655543222000 000 011112244433333332 25889999765555444332 1
Q ss_pred CCceEEEEEe-CCe-EEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCc
Q 040444 258 KDFVLDVGAL-EGH-MCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGE 335 (409)
Q Consensus 258 ~~~~~~L~~~-~G~-L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~ 335 (409)
.. ..+... +|. +.+.... ...+.||-+....... .....+... ....-+.+.+. ++..|+....++
T Consensus 206 -~v-~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~--~~~~~~~~~------~~v~~~~~s~~-~~~~l~~~~~d~ 273 (383)
T 3ei3_B 206 -KV-THAEFNPRCDWLMATSSV-DATVKLWDLRNIKDKN--SYIAEMPHE------KPVNAAYFNPT-DSTKLLTTDQRN 273 (383)
T ss_dssp -CE-EEEEECSSCTTEEEEEET-TSEEEEEEGGGCCSTT--CEEEEEECS------SCEEEEEECTT-TSCEEEEEESSS
T ss_pred -cE-EEEEECCCCCCEEEEEeC-CCEEEEEeCCCCCccc--ceEEEecCC------CceEEEEEcCC-CCCEEEEEcCCC
Confidence 11 122222 444 4444444 3499999988632112 233333321 12333455431 445666666677
Q ss_pred EEEEEECCCCcE
Q 040444 336 KLVWYDWKRKKL 347 (409)
Q Consensus 336 ~l~~yd~~~~~~ 347 (409)
.+..||+++.+.
T Consensus 274 ~i~iwd~~~~~~ 285 (383)
T 3ei3_B 274 EIRVYSSYDWSK 285 (383)
T ss_dssp EEEEEETTBTTS
T ss_pred cEEEEECCCCcc
Confidence 899999998664
No 36
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=89.53 E-value=11 Score=33.39 Aligned_cols=95 Identities=11% Similarity=0.082 Sum_probs=54.8
Q ss_pred EEEEECCCcceee-ecCCCCCCCCCCceEEEEEe-CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcc
Q 040444 235 IVAFDLGLEEFRL-LPQPNYGAREKDFVLDVGAL-EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFR 312 (409)
Q Consensus 235 Il~fDl~~e~~~~-i~lP~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~ 312 (409)
|..+|+.+.+... +.... ... ..+... +|...++... ...+.+|-++.. .....+....
T Consensus 165 v~~~d~~~~~~~~~~~~~~-----~~i-~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~------~~~~~~~~~~------ 225 (337)
T 1gxr_A 165 IAVWDLHNQTLVRQFQGHT-----DGA-SCIDISNDGTKLWTGGL-DNTVRSWDLREG------RQLQQHDFTS------ 225 (337)
T ss_dssp EEEEETTTTEEEEEECCCS-----SCE-EEEEECTTSSEEEEEET-TSEEEEEETTTT------EEEEEEECSS------
T ss_pred EEEEeCCCCceeeeeeccc-----Cce-EEEEECCCCCEEEEEec-CCcEEEEECCCC------ceEeeecCCC------
Confidence 8889998765432 33222 111 123222 5655554444 348999977641 2333333211
Q ss_pred eeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcEEEE
Q 040444 313 FLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKLKTV 350 (409)
Q Consensus 313 ~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~~~v 350 (409)
...-+.+.+ ++..++....++.+..||+++++...+
T Consensus 226 ~v~~~~~s~--~~~~l~~~~~~~~i~~~~~~~~~~~~~ 261 (337)
T 1gxr_A 226 QIFSLGYCP--TGEWLAVGMESSNVEVLHVNKPDKYQL 261 (337)
T ss_dssp CEEEEEECT--TSSEEEEEETTSCEEEEETTSSCEEEE
T ss_pred ceEEEEECC--CCCEEEEEcCCCcEEEEECCCCCeEEE
Confidence 134456666 778777777777799999998876543
No 37
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=89.26 E-value=14 Score=34.44 Aligned_cols=198 Identities=12% Similarity=0.119 Sum_probs=92.7
Q ss_pred cccceEEEeeCCccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceec
Q 040444 94 SCNGLLALSNSDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEY 173 (409)
Q Consensus 94 sc~GLl~l~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~ 173 (409)
|.+++|.... ++.++|||..|++...+-..... ......+.|.+. +.|-++. . ..-
T Consensus 114 S~~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~--------~~~V~sv~fspd-g~~lasg--s------------~Dg 169 (420)
T 4gga_A 114 SSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQP--------GEYISSVAWIKE-GNYLAVG--T------------SSA 169 (420)
T ss_dssp CTTSEEEEEE-TTEEEEEETTTCCEEEEEECCST--------TCCEEEEEECTT-SSEEEEE--E------------TTS
T ss_pred CCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCC--------CCcEEEEEECCC-CCEEEEE--E------------CCC
Confidence 4567776654 67899999999987665332211 223455666663 3443322 1 123
Q ss_pred EEEEEEcCCCceEE-ccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcceeeecCCC
Q 040444 174 EVKVFSLKNRSWTR-VKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPN 252 (409)
Q Consensus 174 ~~~vyss~t~~Wr~-~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~ 252 (409)
.+.|++..++.-.. ..... ..-.++..+|.+-.....+ ..+..+|..........+..
T Consensus 170 ~v~iWd~~~~~~~~~~~~h~---------------~~v~~~s~~~~~l~sgs~d------~~i~~~d~~~~~~~~~~~~~ 228 (420)
T 4gga_A 170 EVQLWDVQQQKRLRNMTSHS---------------ARVGSLSWNSYILSSGSRS------GHIHHHDVRVAEHHVATLSG 228 (420)
T ss_dssp CEEEEETTTTEEEEEECCCS---------------SCEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEEC
T ss_pred eEEEEEcCCCcEEEEEeCCC---------------CceEEEeeCCCEEEEEeCC------CceeEeeecccceeeEEecc
Confidence 67888887764221 11111 0111233444432222222 24777777654433322222
Q ss_pred CCCCCCCceEEEEE-eCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEE
Q 040444 253 YGAREKDFVLDVGA-LEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLE 331 (409)
Q Consensus 253 ~~~~~~~~~~~L~~-~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~ 331 (409)
. ..... .+.. .+|...+.... ...+.||-+.... ..+......... .....-+++.+. ++..+...
T Consensus 229 --h-~~~~~-~~~~~~~g~~l~s~~~-D~~v~i~~~~~~~--~~~~~~~~~~~~-----~~~V~~~~~~p~-~~~~la~~ 295 (420)
T 4gga_A 229 --H-SQEVC-GLRWAPDGRHLASGGN-DNLVNVWPSAPGE--GGWVPLQTFTQH-----QGAVKAVAWCPW-QSNVLATG 295 (420)
T ss_dssp --C-SSCEE-EEEECTTSSEEEEEET-TSCEEEEESSCCS--SCSCCSEEECCC-----SSCEEEEEECTT-CTTEEEEE
T ss_pred --c-cccee-eeeecCCCCeeeeeec-cccceEEeecccc--ccceeeeeeccc-----CCceeeeeeCCC-cccEEEEE
Confidence 0 01111 2222 25555444443 3489999876422 222222211111 112333455541 22333333
Q ss_pred E--cCcEEEEEECCCCcEEE
Q 040444 332 V--NGEKLVWYDWKRKKLKT 349 (409)
Q Consensus 332 ~--~~~~l~~yd~~~~~~~~ 349 (409)
. .++.+..||+.+++...
T Consensus 296 ~gs~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 296 GGTSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp ECTTTCEEEEEETTTTEEEE
T ss_pred eecCCCEEEEEeCCccccce
Confidence 2 24568888888877543
No 38
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=89.14 E-value=12 Score=33.62 Aligned_cols=73 Identities=14% Similarity=0.152 Sum_probs=42.2
Q ss_pred CeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECC-CCcE
Q 040444 269 GHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWK-RKKL 347 (409)
Q Consensus 269 G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~-~~~~ 347 (409)
|.+.+....+ ..+.||-+.... ..+... .+.... ......-+.+.+ ++..|+....++.+..||++ .+++
T Consensus 221 ~~~l~s~~~d-g~i~iwd~~~~~--~~~~~~-~~~~~~---~~~~v~~~~~s~--~g~~l~~~~~dg~i~iw~~~~~~~~ 291 (379)
T 3jrp_A 221 RSYLASVSQD-RTCIIWTQDNEQ--GPWKKT-LLKEEK---FPDVLWRASWSL--SGNVLALSGGDNKVTLWKENLEGKW 291 (379)
T ss_dssp SEEEEEEETT-SCEEEEEESSTT--SCCEEE-ESSSSC---CSSCEEEEEECS--SSCCEEEEESSSSEEEEEEEETTEE
T ss_pred CCeEEEEeCC-CEEEEEeCCCCC--ccceee-eecccc---CCCcEEEEEEcC--CCCEEEEecCCCcEEEEeCCCCCcc
Confidence 5655555443 489999988632 223222 121111 112234467777 77777777777779999998 4455
Q ss_pred EEE
Q 040444 348 KTV 350 (409)
Q Consensus 348 ~~v 350 (409)
+.+
T Consensus 292 ~~~ 294 (379)
T 3jrp_A 292 EPA 294 (379)
T ss_dssp EEE
T ss_pred ccc
Confidence 554
No 39
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=88.96 E-value=13 Score=33.58 Aligned_cols=200 Identities=11% Similarity=0.020 Sum_probs=100.1
Q ss_pred cceEEEeeC-----CccEEEEcccccceec-cCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCc
Q 040444 96 NGLLALSNS-----DQDIALFNPATRQLFK-LPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGC 169 (409)
Q Consensus 96 ~GLl~l~~~-----~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~ 169 (409)
+|+..+... +..+.++||.|++... ++......+ ......++.++. +. +.....
T Consensus 2 ~g~~v~neg~~g~~~~~l~~~d~~t~~~~~~i~~~~n~~~-----lg~~~~~i~~~~---~~-lyv~~~----------- 61 (328)
T 3dsm_A 2 SGLFITNEGNFQYSNATLSYYDPATCEVENEVFYRANGFK-----LGDVAQSMVIRD---GI-GWIVVN----------- 61 (328)
T ss_dssp CEEEEEECCCTTSCCBEEEEEETTTTEEECSHHHHHHSSC-----CBSCEEEEEEET---TE-EEEEEG-----------
T ss_pred CeEEEEecCCCCCCCceEEEEECCCCEEhhhhHhhhcCcc-----cCccceEEEEEC---CE-EEEEEc-----------
Confidence 455555442 5689999999998753 221100000 011223444442 22 222221
Q ss_pred ceecEEEEEEcCCCce-EEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCccee-e
Q 040444 170 FVEYEVKVFSLKNRSW-TRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFR-L 247 (409)
Q Consensus 170 ~~~~~~~vyss~t~~W-r~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~-~ 247 (409)
..-.+.+++..++.- +.++... .. ..-++.-+|.+|...... ..|..+|+.+.+.. .
T Consensus 62 -~~~~v~viD~~t~~~~~~i~~~~----------~p----~~i~~~~~g~lyv~~~~~------~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 62 -NSHVIFAIDINTFKEVGRITGFT----------SP----RYIHFLSDEKAYVTQIWD------YRIFIINPKTYEITGY 120 (328)
T ss_dssp -GGTEEEEEETTTCCEEEEEECCS----------SE----EEEEEEETTEEEEEEBSC------SEEEEEETTTTEEEEE
T ss_pred -CCCEEEEEECcccEEEEEcCCCC----------CC----cEEEEeCCCeEEEEECCC------CeEEEEECCCCeEEEE
Confidence 123678888887664 3332211 00 111122578887665322 25999999987764 4
Q ss_pred ecCCCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCE
Q 040444 248 LPQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDK 327 (409)
Q Consensus 248 i~lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ 327 (409)
++.+. ..........+...+|+|+++.......+.++-++. . ....+|..... ..-+.+.+ + +.
T Consensus 121 i~~g~-~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t----~--~~~~~i~~g~~------p~~i~~~~--d-G~ 184 (328)
T 3dsm_A 121 IECPD-MDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTET----D--KVVDELTIGIQ------PTSLVMDK--Y-NK 184 (328)
T ss_dssp EECTT-CCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTT----T--EEEEEEECSSC------BCCCEECT--T-SE
T ss_pred EEcCC-ccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCC----C--eEEEEEEcCCC------ccceEEcC--C-CC
Confidence 66554 110000011234478888887642233555443332 1 23334443211 12244544 5 45
Q ss_pred EEEEEcC-----------cEEEEEECCCCcEE-EEEE
Q 040444 328 VLLEVNG-----------EKLVWYDWKRKKLK-TVKI 352 (409)
Q Consensus 328 ill~~~~-----------~~l~~yd~~~~~~~-~v~~ 352 (409)
+++.... ..|+.+|++++++. .+.+
T Consensus 185 l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~ 221 (328)
T 3dsm_A 185 MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF 221 (328)
T ss_dssp EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC
T ss_pred EEEEECCCccCCccccCCceEEEEECCCCeEEEEEec
Confidence 6665433 46999999999876 3444
No 40
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=87.77 E-value=17 Score=33.57 Aligned_cols=189 Identities=10% Similarity=0.053 Sum_probs=94.5
Q ss_pred cceEEEeeCCccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEE
Q 040444 96 NGLLALSNSDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEV 175 (409)
Q Consensus 96 ~GLl~l~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~ 175 (409)
+.++. ...++.+.|||..+++...+-.... ......+.+.+. +.+-++ ... .-.+
T Consensus 104 ~~l~~-~~~d~~v~lw~~~~~~~~~~~~~~~---------~~~v~~v~~s~~-~~~l~~--~~~------------dg~i 158 (401)
T 4aez_A 104 LNVVA-VALERNVYVWNADSGSVSALAETDE---------STYVASVKWSHD-GSFLSV--GLG------------NGLV 158 (401)
T ss_dssp TSEEE-EEETTEEEEEETTTCCEEEEEECCT---------TCCEEEEEECTT-SSEEEE--EET------------TSCE
T ss_pred CCEEE-EECCCeEEEeeCCCCcEeEeeecCC---------CCCEEEEEECCC-CCEEEE--ECC------------CCeE
Confidence 34443 3357789999999988765543221 223455666663 333222 211 2257
Q ss_pred EEEEcCCCceEE-ccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcceeeecCCCCC
Q 040444 176 KVFSLKNRSWTR-VKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYG 254 (409)
Q Consensus 176 ~vyss~t~~Wr~-~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~ 254 (409)
.+|+..++.-.. +.... ..-.++..+|.+...+..+. .|..+|+....-....+..
T Consensus 159 ~iwd~~~~~~~~~~~~~~---------------~~v~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~-- 215 (401)
T 4aez_A 159 DIYDVESQTKLRTMAGHQ---------------ARVGCLSWNRHVLSSGSRSG------AIHHHDVRIANHQIGTLQG-- 215 (401)
T ss_dssp EEEETTTCCEEEEECCCS---------------SCEEEEEEETTEEEEEETTS------EEEEEETTSSSCEEEEEEC--
T ss_pred EEEECcCCeEEEEecCCC---------------CceEEEEECCCEEEEEcCCC------CEEEEecccCcceeeEEcC--
Confidence 788887764322 21111 01112333555444433332 5889999843322212211
Q ss_pred CCCCCceEEEEEe-CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEc
Q 040444 255 AREKDFVLDVGAL-EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVN 333 (409)
Q Consensus 255 ~~~~~~~~~L~~~-~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~ 333 (409)
. .... ..+... +|.+.++...+ ..+.||-+... .....+... .....-+.+.+ +++.++....
T Consensus 216 ~-~~~v-~~~~~~~~~~~l~s~~~d-~~v~iwd~~~~------~~~~~~~~~-----~~~v~~~~~~p--~~~~ll~~~~ 279 (401)
T 4aez_A 216 H-SSEV-CGLAWRSDGLQLASGGND-NVVQIWDARSS------IPKFTKTNH-----NAAVKAVAWCP--WQSNLLATGG 279 (401)
T ss_dssp C-SSCE-EEEEECTTSSEEEEEETT-SCEEEEETTCS------SEEEEECCC-----SSCCCEEEECT--TSTTEEEEEC
T ss_pred C-CCCe-eEEEEcCCCCEEEEEeCC-CeEEEccCCCC------CccEEecCC-----cceEEEEEECC--CCCCEEEEec
Confidence 0 1111 122222 56655555443 48999987641 122222211 11234466666 5555555443
Q ss_pred ---CcEEEEEECCCCcEE
Q 040444 334 ---GEKLVWYDWKRKKLK 348 (409)
Q Consensus 334 ---~~~l~~yd~~~~~~~ 348 (409)
++.+..||+++++..
T Consensus 280 gs~d~~i~i~d~~~~~~~ 297 (401)
T 4aez_A 280 GTMDKQIHFWNAATGARV 297 (401)
T ss_dssp CTTTCEEEEEETTTCCEE
T ss_pred CCCCCEEEEEECCCCCEE
Confidence 667999999887753
No 41
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=86.81 E-value=9.9 Score=33.66 Aligned_cols=113 Identities=8% Similarity=0.004 Sum_probs=70.6
Q ss_pred ceE-EECCeEEEEeecCCCCCCccEEEEEECCCcce-eeecCCCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEEEe
Q 040444 211 YGV-YVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEF-RLLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMK 288 (409)
Q Consensus 211 ~~v-~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~-~~i~lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~ 288 (409)
+++ +.+|.||--+.... .|..+|+.+.+. ..+ +|+ .. |...+...+++|+++..... .+|+.+
T Consensus 58 qGL~~~~~~Ly~stG~~g------~v~~iD~~Tgkv~~~~-l~~-~~----FgeGit~~g~~Ly~ltw~~~---~v~V~D 122 (268)
T 3nok_A 58 QGLVFHQGHFFESTGHQG------TLRQLSLESAQPVWME-RLG-NI----FAEGLASDGERLYQLTWTEG---LLFTWS 122 (268)
T ss_dssp EEEEEETTEEEEEETTTT------EEEECCSSCSSCSEEE-ECT-TC----CEEEEEECSSCEEEEESSSC---EEEEEE
T ss_pred ceEEEECCEEEEEcCCCC------EEEEEECCCCcEEeEE-CCC-Cc----ceeEEEEeCCEEEEEEccCC---EEEEEE
Confidence 344 34566765544432 399999998765 335 665 22 33346677889988765432 456655
Q ss_pred ecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcE-EEEEE
Q 040444 289 EYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKL-KTVKI 352 (409)
Q Consensus 289 ~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~-~~v~~ 352 (409)
- ..-..+.+|+... .+.++.. +++.+++......|..+|++|.+. +.|.+
T Consensus 123 ~----~Tl~~~~ti~~~~--------eGwGLt~--Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V 173 (268)
T 3nok_A 123 G----MPPQRERTTRYSG--------EGWGLCY--WNGKLVRSDGGTMLTFHEPDGFALVGAVQV 173 (268)
T ss_dssp T----TTTEEEEEEECSS--------CCCCEEE--ETTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred C----CcCcEEEEEeCCC--------ceeEEec--CCCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence 3 2345667777531 2345555 678888776567899999999775 44554
No 42
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=86.27 E-value=18 Score=32.42 Aligned_cols=197 Identities=13% Similarity=0.135 Sum_probs=94.3
Q ss_pred eEEEeeCCccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEEE
Q 040444 98 LLALSNSDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKV 177 (409)
Q Consensus 98 Ll~l~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~v 177 (409)
+|+....++.+.|||..++++..+-..... .....++.+.+. +++-+.. . ..-.+.+
T Consensus 22 ~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h--------~~~v~~~~~~~~-~~~l~~~--~------------~dg~i~v 78 (372)
T 1k8k_C 22 QIAICPNNHEVHIYEKSGNKWVQVHELKEH--------NGQVTGVDWAPD-SNRIVTC--G------------TDRNAYV 78 (372)
T ss_dssp EEEEECSSSEEEEEEEETTEEEEEEEEECC--------SSCEEEEEEETT-TTEEEEE--E------------TTSCEEE
T ss_pred EEEEEeCCCEEEEEeCCCCcEEeeeeecCC--------CCcccEEEEeCC-CCEEEEE--c------------CCCeEEE
Confidence 344443567889999988853322211111 223455666663 3332222 1 1235778
Q ss_pred EEcCCCceEEccccCcccccceeeeeeeeecccceEE--ECCeEEEEeecCCCCCCccEEEEEECCCcc----eeeecCC
Q 040444 178 FSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVY--VNGVVHWVSPRRPEFGIGNLIVAFDLGLEE----FRLLPQP 251 (409)
Q Consensus 178 yss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~--~~G~lywl~~~~~~~~~~~~Il~fDl~~e~----~~~i~lP 251 (409)
|+..++.+.......... .. -.++. -+|.+...+..+. .|..+|+.+.+ ...+..+
T Consensus 79 wd~~~~~~~~~~~~~~~~-------~~-----v~~~~~~~~~~~l~~~~~d~------~v~i~d~~~~~~~~~~~~~~~~ 140 (372)
T 1k8k_C 79 WTLKGRTWKPTLVILRIN-------RA-----ARCVRWAPNEKKFAVGSGSR------VISICYFEQENDWWVCKHIKKP 140 (372)
T ss_dssp EEEETTEEEEEEECCCCS-------SC-----EEEEEECTTSSEEEEEETTS------SEEEEEEETTTTEEEEEEECTT
T ss_pred EECCCCeeeeeEEeecCC-------Cc-----eeEEEECCCCCEEEEEeCCC------EEEEEEecCCCcceeeeeeecc
Confidence 888887765442211000 00 01111 1344333333322 27777776554 2222222
Q ss_pred CCCCCCCCceEEEEEe-CCeEEEEEecCCCeEEEEEEeecCC-----CCce-------eEEEEeecccccCCcceeeeEE
Q 040444 252 NYGAREKDFVLDVGAL-EGHMCLMCNYDLVKVDVWMMKEYGL-----KESW-------SKMFSIDRCRSISSFRFLRPLI 318 (409)
Q Consensus 252 ~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~~IW~l~~~~~-----~~~W-------~~~~~I~~~~~~~~~~~~~p~~ 318 (409)
. .... ..+... +|.+.++... ...+.+|-+..... ...| .....+.. ......-+.
T Consensus 141 ~----~~~i-~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~ 209 (372)
T 1k8k_C 141 I----RSTV-LSLDWHPNSVLLAAGSC-DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS-----SCGWVHGVC 209 (372)
T ss_dssp C----CSCE-EEEEECTTSSEEEEEET-TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC-----CSSCEEEEE
T ss_pred c----CCCe-eEEEEcCCCCEEEEEcC-CCCEEEEEcccccccccccccccccccchhhheEecCC-----CCCeEEEEE
Confidence 2 1111 123322 5555554444 34899998652110 1122 22222221 111234466
Q ss_pred EEeecCCCEEEEEEcCcEEEEEECCCCcEE
Q 040444 319 CSNEDGGDKVLLEVNGEKLVWYDWKRKKLK 348 (409)
Q Consensus 319 ~~~~~~~~~ill~~~~~~l~~yd~~~~~~~ 348 (409)
+.+ ++..|+....++.+..||+++++..
T Consensus 210 ~~~--~~~~l~~~~~d~~i~i~d~~~~~~~ 237 (372)
T 1k8k_C 210 FSA--NGSRVAWVSHDSTVCLADADKKMAV 237 (372)
T ss_dssp ECS--SSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred ECC--CCCEEEEEeCCCEEEEEECCCCcee
Confidence 666 7777777777788999999877743
No 43
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=85.13 E-value=18 Score=31.29 Aligned_cols=189 Identities=8% Similarity=-0.035 Sum_probs=91.4
Q ss_pred cccceEEEee-CCccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCccee
Q 040444 94 SCNGLLALSN-SDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVE 172 (409)
Q Consensus 94 sc~GLl~l~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~ 172 (409)
..+|.+.+.. ....++++|| +++...+..+.. .....++.+|+.. . +.... . ..
T Consensus 107 ~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~---------~~~~~~i~~~~~g-~--l~v~~-~-----------~~ 161 (299)
T 2z2n_A 107 GPNGDIWFTEMNGNRIGRITD-DGKIREYELPNK---------GSYPSFITLGSDN-A--LWFTE-N-----------QN 161 (299)
T ss_dssp CTTSCEEEEETTTTEEEEECT-TCCEEEEECSST---------TCCEEEEEECTTS-C--EEEEE-T-----------TT
T ss_pred CCCCCEEEEecCCceEEEECC-CCCEEEecCCCC---------CCCCceEEEcCCC-C--EEEEe-C-----------CC
Confidence 3467766654 3567899999 777665433211 1234566667543 1 22211 1 11
Q ss_pred cEEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEE--CCeEEEEeecCCCCCCccEEEEEECCCcceeeecC
Q 040444 173 YEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYV--NGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQ 250 (409)
Q Consensus 173 ~~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~l 250 (409)
..+.+|+. ++.......... . ....++.+ +|.+|+..... ..|..||. +.++..+.+
T Consensus 162 ~~i~~~~~-~g~~~~~~~~~~-----------~--~~~~~i~~~~~g~l~v~~~~~------~~i~~~~~-~g~~~~~~~ 220 (299)
T 2z2n_A 162 NAIGRITE-SGDITEFKIPTP-----------A--SGPVGITKGNDDALWFVEIIG------NKIGRITT-SGEITEFKI 220 (299)
T ss_dssp TEEEEECT-TCCEEEEECSST-----------T--CCEEEEEECTTSSEEEEETTT------TEEEEECT-TCCEEEEEC
T ss_pred CEEEEEcC-CCcEEEeeCCCC-----------C--CcceeEEECCCCCEEEEccCC------ceEEEECC-CCcEEEEEC
Confidence 24566776 666554311110 0 01112333 47775543322 25999999 777776666
Q ss_pred CCCCCCCCCceEEEEEe-CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEE
Q 040444 251 PNYGAREKDFVLDVGAL-EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVL 329 (409)
Q Consensus 251 P~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~il 329 (409)
|. .. .. ...+... +|.|++..... ..+.+|-. .+ . ...+.... .......+.+ + + +.|+
T Consensus 221 ~~-~~--~~-~~~i~~~~~g~l~v~~~~~-~~i~~~d~--~g---~---~~~~~~~~---~~~~~~~i~~-~--~-g~l~ 280 (299)
T 2z2n_A 221 PT-PN--AR-PHAITAGAGIDLWFTEWGA-NKIGRLTS--NN---I---IEEYPIQI---KSAEPHGICF-D--G-ETIW 280 (299)
T ss_dssp SS-TT--CC-EEEEEECSTTCEEEEETTT-TEEEEEET--TT---E---EEEEECSS---SSCCEEEEEE-C--S-SCEE
T ss_pred CC-CC--CC-ceeEEECCCCCEEEeccCC-ceEEEECC--CC---c---eEEEeCCC---CCCccceEEe-c--C-CCEE
Confidence 64 22 11 1234443 67877765332 25554433 12 1 12222211 0111233444 4 5 4577
Q ss_pred EEEcCcEEEEEECCCCcEE
Q 040444 330 LEVNGEKLVWYDWKRKKLK 348 (409)
Q Consensus 330 l~~~~~~l~~yd~~~~~~~ 348 (409)
+......++.+|+++++++
T Consensus 281 v~~~~~~l~~~~~~~~~~~ 299 (299)
T 2z2n_A 281 FAMECDKIGKLTLIKDNME 299 (299)
T ss_dssp EEETTTEEEEEEEC-----
T ss_pred EEecCCcEEEEEcCcccCC
Confidence 7765667999999988754
No 44
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=85.05 E-value=21 Score=31.98 Aligned_cols=121 Identities=10% Similarity=0.025 Sum_probs=64.1
Q ss_pred CCeEEEEeecCCCCCCccEEEEEECCCcceeeecC-CCCCCCCCCceEEEE-EeCCeEEEEEecCCCeEEEEEEeecCCC
Q 040444 216 NGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQ-PNYGAREKDFVLDVG-ALEGHMCLMCNYDLVKVDVWMMKEYGLK 293 (409)
Q Consensus 216 ~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~l-P~~~~~~~~~~~~L~-~~~G~L~~~~~~~~~~~~IW~l~~~~~~ 293 (409)
+|.+|....... ...|..||+.+.+...+.. +. .. .... .+. .-+|+..++.......+.+|.++..+
T Consensus 50 dg~l~~~~~~~~----~~~v~~~~~~~g~~~~~~~~~~-~~-~~p~--~~a~spdg~~l~~~~~~~~~v~v~~~~~~g-- 119 (347)
T 3hfq_A 50 KDCLYSVDKEDD----EGGIAAWQIDGQTAHKLNTVVA-PG-TPPA--YVAVDEARQLVYSANYHKGTAEVMKIAADG-- 119 (347)
T ss_dssp TCEEEEEEEETT----EEEEEEEEEETTEEEEEEEEEE-ES-CCCS--EEEEETTTTEEEEEETTTTEEEEEEECTTS--
T ss_pred CCeEEEEEecCC----CceEEEEEecCCcEEEeeeeec-CC-CCCE--EEEECCCCCEEEEEeCCCCEEEEEEeCCCC--
Confidence 688776654311 1359999997777655432 21 11 1111 233 33566444444444589999997533
Q ss_pred CceeEEEEeecccccC----CcceeeeEEEEeecCCCEEEEEEc-CcEEEEEECC-CCcEEEE
Q 040444 294 ESWSKMFSIDRCRSIS----SFRFLRPLICSNEDGGDKVLLEVN-GEKLVWYDWK-RKKLKTV 350 (409)
Q Consensus 294 ~~W~~~~~I~~~~~~~----~~~~~~p~~~~~~~~~~~ill~~~-~~~l~~yd~~-~~~~~~v 350 (409)
.......+....... ......-+++.+ +|. +++... +..+..||++ ++++..+
T Consensus 120 -~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp--dg~-l~v~~~~~~~v~~~~~~~~g~~~~~ 178 (347)
T 3hfq_A 120 -ALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP--DNR-LAVIDLGSDKVYVYNVSDAGQLSEQ 178 (347)
T ss_dssp -CEEEEEEEECCCCCSSTTCSSCCEEEEEECT--TSC-EEEEETTTTEEEEEEECTTSCEEEE
T ss_pred -CeeecceeecCCCCCCccccCCCceEEEECC--CCc-EEEEeCCCCEEEEEEECCCCcEEEe
Confidence 234444443321100 011223366777 767 555543 4569999998 6666544
No 45
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=84.59 E-value=21 Score=31.60 Aligned_cols=107 Identities=16% Similarity=0.043 Sum_probs=57.3
Q ss_pred EEEEEECCC-cc--eeeecCCCCCCCCCCceEEEEEe--CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeeccccc
Q 040444 234 LIVAFDLGL-EE--FRLLPQPNYGAREKDFVLDVGAL--EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSI 308 (409)
Q Consensus 234 ~Il~fDl~~-e~--~~~i~lP~~~~~~~~~~~~L~~~--~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~ 308 (409)
.|..+|+.+ .. ......+. . ... ..+... +|.+.++... ...+.||.++..+..........+......
T Consensus 171 ~i~i~d~~~~~~~~~~~~~~~~-~---~~i-~~i~~~~~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 244 (342)
T 1yfq_A 171 QVQWFRLPLCEDDNGTIEESGL-K---YQI-RDVALLPKEQEGYACSSI-DGRVAVEFFDDQGDDYNSSKRFAFRCHRLN 244 (342)
T ss_dssp EEEEEESSCCTTCCCEEEECSC-S---SCE-EEEEECSGGGCEEEEEET-TSEEEEEECCTTCCSTTCTTCEEEECCCCC
T ss_pred eEEEEECCccccccceeeecCC-C---Cce-eEEEECCCCCCEEEEEec-CCcEEEEEEcCCCcccccccceeeeccccc
Confidence 489999987 33 33333332 1 111 133333 4666555554 349999998764211112222233221100
Q ss_pred ----CCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcEE
Q 040444 309 ----SSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKLK 348 (409)
Q Consensus 309 ----~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~~ 348 (409)
.......-+.+.+ ++..|+....++.+..||+++++..
T Consensus 245 ~~~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~ 286 (342)
T 1yfq_A 245 LKDTNLAYPVNSIEFSP--RHKFLYTAGSDGIISCWNLQTRKKI 286 (342)
T ss_dssp TTCCSSCCCEEEEEECT--TTCCEEEEETTSCEEEEETTTTEEE
T ss_pred ccccccceeEEEEEEcC--CCCEEEEecCCceEEEEcCccHhHh
Confidence 0011244566776 7777776666778999999988753
No 46
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=83.87 E-value=25 Score=31.99 Aligned_cols=193 Identities=10% Similarity=0.101 Sum_probs=93.4
Q ss_pred ecccceEEEeeCCccEEEEcccccceec-cCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcce
Q 040444 93 GSCNGLLALSNSDQDIALFNPATRQLFK-LPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFV 171 (409)
Q Consensus 93 ~sc~GLl~l~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~ 171 (409)
...+|.|.+...+..++.+|+.|++.+. .+..... . ..... + +. +|+... .
T Consensus 100 ~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~-~------~~p~~----~---~~-~v~v~~-------------~ 151 (376)
T 3q7m_A 100 TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEA-L------SRPVV----S---DG-LVLIHT-------------S 151 (376)
T ss_dssp EEETTEEEEEETTSEEEEEETTTCCEEEEEECSSCC-C------SCCEE----E---TT-EEEEEC-------------T
T ss_pred eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCce-E------cCCEE----E---CC-EEEEEc-------------C
Confidence 3457888777667789999999987553 1111100 0 11111 1 12 222211 1
Q ss_pred ecEEEEEEcCCC--ceEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcc--eee
Q 040444 172 EYEVKVFSLKNR--SWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEE--FRL 247 (409)
Q Consensus 172 ~~~~~vyss~t~--~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~--~~~ 247 (409)
.-.+..|+..++ .|+.-...+. ... .....++..+|.+|.-... ..|.++|..+.+ |+.
T Consensus 152 ~g~l~~~d~~tG~~~W~~~~~~~~---------~~~-~~~~~~~~~~~~v~~g~~~-------g~l~~~d~~tG~~~w~~ 214 (376)
T 3q7m_A 152 NGQLQALNEADGAVKWTVNLDMPS---------LSL-RGESAPTTAFGAAVVGGDN-------GRVSAVLMEQGQMIWQQ 214 (376)
T ss_dssp TSEEEEEETTTCCEEEEEECCC---------------CCCCCCEEETTEEEECCTT-------TEEEEEETTTCCEEEEE
T ss_pred CCeEEEEECCCCcEEEEEeCCCCc---------eee-cCCCCcEEECCEEEEEcCC-------CEEEEEECCCCcEEEEE
Confidence 125667787665 4876543331 111 1123445667877653322 259999997654 433
Q ss_pred -ecCCCCCCC-CC---CceEEEEEeCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEee
Q 040444 248 -LPQPNYGAR-EK---DFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNE 322 (409)
Q Consensus 248 -i~lP~~~~~-~~---~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~ 322 (409)
...|. ... .. .........+|.+++..... .+ ..++-...+..|... ... ......
T Consensus 215 ~~~~~~-~~~~~~~~~~~~~~p~~~~~~v~~~~~~g--~l--~~~d~~tG~~~w~~~----~~~-------~~~~~~--- 275 (376)
T 3q7m_A 215 RISQAT-GSTEIDRLSDVDTTPVVVNGVVFALAYNG--NL--TALDLRSGQIMWKRE----LGS-------VNDFIV--- 275 (376)
T ss_dssp ECCC------------CCCCCCEEETTEEEEECTTS--CE--EEEETTTCCEEEEEC----CCC-------EEEEEE---
T ss_pred ecccCC-CCcccccccccCCCcEEECCEEEEEecCc--EE--EEEECCCCcEEeecc----CCC-------CCCceE---
Confidence 23332 110 00 00011234467766654321 33 233321123456542 110 111222
Q ss_pred cCCCEEEEEEcCcEEEEEECCCCcEEEE
Q 040444 323 DGGDKVLLEVNGEKLVWYDWKRKKLKTV 350 (409)
Q Consensus 323 ~~~~~ill~~~~~~l~~yd~~~~~~~~v 350 (409)
+++.|++...++.|+.+|.++++...-
T Consensus 276 -~~~~l~~~~~~g~l~~~d~~tG~~~w~ 302 (376)
T 3q7m_A 276 -DGNRIYLVDQNDRVMALTIDGGVTLWT 302 (376)
T ss_dssp -ETTEEEEEETTCCEEEEETTTCCEEEE
T ss_pred -ECCEEEEEcCCCeEEEEECCCCcEEEe
Confidence 347888887777799999999986543
No 47
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=83.80 E-value=23 Score=31.48 Aligned_cols=205 Identities=10% Similarity=0.062 Sum_probs=101.5
Q ss_pred ecccceEEEee-CCccEEEEccccccee-ccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcc
Q 040444 93 GSCNGLLALSN-SDQDIALFNPATRQLF-KLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCF 170 (409)
Q Consensus 93 ~sc~GLl~l~~-~~~~~~V~NP~T~~~~-~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~ 170 (409)
...++.+.+.. .+..+.++|+.|++.. .++......+... ......++.+++..+ + ++... ..
T Consensus 97 s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~-~-l~~~~-~~---------- 161 (353)
T 3vgz_A 97 NNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEV--RPLQPRELVADDATN-T-VYISG-IG---------- 161 (353)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSC--CCCEEEEEEEETTTT-E-EEEEE-ES----------
T ss_pred CCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcccccc--CCCCCceEEECCCCC-E-EEEEe-cC----------
Confidence 34444454444 3568999999998764 3443221111100 122345677777544 2 22221 11
Q ss_pred eecEEEEEEcCCCceEE-ccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCccee-ee
Q 040444 171 VEYEVKVFSLKNRSWTR-VKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFR-LL 248 (409)
Q Consensus 171 ~~~~~~vyss~t~~Wr~-~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~-~i 248 (409)
....+.+++..++.=.. +..... ....-.+.-+|...+..... ..|..+|+.+.+.. .+
T Consensus 162 ~~~~i~~~d~~~~~~~~~~~~~~~-------------~~~~~~~s~dg~~l~~~~~~------~~i~~~d~~~~~~~~~~ 222 (353)
T 3vgz_A 162 KESVIWVVDGGNIKLKTAIQNTGK-------------MSTGLALDSEGKRLYTTNAD------GELITIDTADNKILSRK 222 (353)
T ss_dssp SSCEEEEEETTTTEEEEEECCCCT-------------TCCCCEEETTTTEEEEECTT------SEEEEEETTTTEEEEEE
T ss_pred CCceEEEEcCCCCceEEEecCCCC-------------ccceEEECCCCCEEEEEcCC------CeEEEEECCCCeEEEEE
Confidence 12357788887654221 210110 00111223356543444332 24889999877654 35
Q ss_pred cCCCCCCCCCCceEEEEEe-CCe-EEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCC
Q 040444 249 PQPNYGAREKDFVLDVGAL-EGH-MCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGD 326 (409)
Q Consensus 249 ~lP~~~~~~~~~~~~L~~~-~G~-L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~ 326 (409)
..+..+. ......+... +|. |++.. .....+.+|-++. ......+.... ..-+.+.+ +|+
T Consensus 223 ~~~~~~~--~~~~~~~~~s~dg~~l~~~~-~~~~~v~~~d~~~------~~~~~~~~~~~-------~~~~~~s~--dg~ 284 (353)
T 3vgz_A 223 KLLDDGK--EHFFINISLDTARQRAFITD-SKAAEVLVVDTRN------GNILAKVAAPE-------SLAVLFNP--ARN 284 (353)
T ss_dssp ECCCSSS--CCCEEEEEEETTTTEEEEEE-SSSSEEEEEETTT------CCEEEEEECSS-------CCCEEEET--TTT
T ss_pred EcCCCCC--CcccceEEECCCCCEEEEEe-CCCCEEEEEECCC------CcEEEEEEcCC-------CceEEECC--CCC
Confidence 5533111 1111123333 454 54444 3334777776543 22334444321 12356777 778
Q ss_pred EEEEEE-cCcEEEEEECCCCcEEE
Q 040444 327 KVLLEV-NGEKLVWYDWKRKKLKT 349 (409)
Q Consensus 327 ~ill~~-~~~~l~~yd~~~~~~~~ 349 (409)
.+++.. .+..+..||+++++...
T Consensus 285 ~l~v~~~~~~~v~~~d~~~~~~~~ 308 (353)
T 3vgz_A 285 EAYVTHRQAGKVSVIDAKSYKVVK 308 (353)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEEEECCCCeEEEEECCCCeEEE
Confidence 777766 35679999999888644
No 48
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=83.35 E-value=26 Score=31.78 Aligned_cols=98 Identities=12% Similarity=-0.025 Sum_probs=50.9
Q ss_pred EEEEECCCccee-eecCCCCCCCCCCceEEEEEe--CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCc
Q 040444 235 IVAFDLGLEEFR-LLPQPNYGAREKDFVLDVGAL--EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSF 311 (409)
Q Consensus 235 Il~fDl~~e~~~-~i~lP~~~~~~~~~~~~L~~~--~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~ 311 (409)
|..+|+.+.+.. .+..+. . ......+... ++.+.+.... ...+.||-++.. ..+.++.-. .
T Consensus 194 v~iwd~~~~~~~~~~~~~~-~---~~~~~~~~~~p~~~~~l~sg~~-dg~v~~wd~~~~------~~~~~~~~h-----~ 257 (344)
T 4gqb_B 194 ILLWDTRCPKPASQIGCSA-P---GYLPTSLAWHPQQSEVFVFGDE-NGTVSLVDTKST------SCVLSSAVH-----S 257 (344)
T ss_dssp EEEEETTSSSCEEECC--------CCCEEEEEECSSCTTEEEEEET-TSEEEEEESCC--------CCEEEECC-----S
T ss_pred cccccccccceeeeeecce-e---eccceeeeecCCCCcceEEecc-CCcEEEEECCCC------cEEEEEcCC-----C
Confidence 888999876543 233322 1 1111123222 4555554444 348999976641 122222211 1
Q ss_pred ceeeeEEEEeecCCCEEEE-EEcCcEEEEEECCCCcEEEE
Q 040444 312 RFLRPLICSNEDGGDKVLL-EVNGEKLVWYDWKRKKLKTV 350 (409)
Q Consensus 312 ~~~~p~~~~~~~~~~~ill-~~~~~~l~~yd~~~~~~~~v 350 (409)
....-+++.+ ++..+++ ...++.+..||.+++++..+
T Consensus 258 ~~v~~v~fsp--~g~~~lasgs~D~~i~vwd~~~~~~~~~ 295 (344)
T 4gqb_B 258 QCVTGLVFSP--HSVPFLASLSEDCSLAVLDSSLSELFRS 295 (344)
T ss_dssp SCEEEEEECS--SSSCCEEEEETTSCEEEECTTCCEEEEE
T ss_pred CCEEEEEEcc--CCCeEEEEEeCCCeEEEEECCCCcEEEE
Confidence 2244567777 6655444 44567799999999876543
No 49
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=83.30 E-value=28 Score=32.12 Aligned_cols=196 Identities=15% Similarity=0.093 Sum_probs=97.3
Q ss_pred cccceEEEee-CCccEEEEccccccee-ccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcce
Q 040444 94 SCNGLLALSN-SDQDIALFNPATRQLF-KLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFV 171 (409)
Q Consensus 94 sc~GLl~l~~-~~~~~~V~NP~T~~~~-~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~ 171 (409)
+.+|-+++.. .+..+.+||+.+++.. .++.. .....++.+++..+ + ++... . .
T Consensus 178 ~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~-~-l~~~~-~-----------~ 232 (433)
T 3bws_A 178 PEHNELWVSQMQANAVHVFDLKTLAYKATVDLT-----------GKWSKILLYDPIRD-L-VYCSN-W-----------I 232 (433)
T ss_dssp GGGTEEEEEEGGGTEEEEEETTTCCEEEEEECS-----------SSSEEEEEEETTTT-E-EEEEE-T-----------T
T ss_pred cCCCEEEEEECCCCEEEEEECCCceEEEEEcCC-----------CCCeeEEEEcCCCC-E-EEEEe-c-----------C
Confidence 3456555443 3567899998886544 33311 12234566666433 2 22211 0 1
Q ss_pred ecEEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCC-C-CccEEEEEECCCcceee-e
Q 040444 172 EYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEF-G-IGNLIVAFDLGLEEFRL-L 248 (409)
Q Consensus 172 ~~~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~-~~~~Il~fDl~~e~~~~-i 248 (409)
.-.+.+|+..++.....-... ... ..-.+.-+|...+.+...... . ....|..+|+.+.+... +
T Consensus 233 ~~~i~~~d~~~~~~~~~~~~~----------~~~---~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~ 299 (433)
T 3bws_A 233 SEDISVIDRKTKLEIRKTDKI----------GLP---RGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI 299 (433)
T ss_dssp TTEEEEEETTTTEEEEECCCC----------SEE---EEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE
T ss_pred CCcEEEEECCCCcEEEEecCC----------CCc---eEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec
Confidence 236788888877543321111 000 011111245444444321110 0 12368899998765433 2
Q ss_pred cCCCCCCCCCCceEEEEE-eCC-eEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCC
Q 040444 249 PQPNYGAREKDFVLDVGA-LEG-HMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGD 326 (409)
Q Consensus 249 ~lP~~~~~~~~~~~~L~~-~~G-~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~ 326 (409)
..+. .. ..+.. -+| .|++... ....+.+|-++. ......+.... ...-+++.+ +|.
T Consensus 300 ~~~~-~~------~~~~~~~~g~~l~~~~~-~~~~v~v~d~~~------~~~~~~~~~~~------~~~~~~~s~--dg~ 357 (433)
T 3bws_A 300 GPPG-NK------RHIVSGNTENKIYVSDM-CCSKIEVYDLKE------KKVQKSIPVFD------KPNTIALSP--DGK 357 (433)
T ss_dssp EEEE-CE------EEEEECSSTTEEEEEET-TTTEEEEEETTT------TEEEEEEECSS------SEEEEEECT--TSS
T ss_pred cCCC-Cc------ceEEECCCCCEEEEEec-CCCEEEEEECCC------CcEEEEecCCC------CCCeEEEcC--CCC
Confidence 2221 11 11222 245 4544443 345899998763 23334444221 134466766 777
Q ss_pred EEEEEEcC---------------cEEEEEECCCCcEEE
Q 040444 327 KVLLEVNG---------------EKLVWYDWKRKKLKT 349 (409)
Q Consensus 327 ~ill~~~~---------------~~l~~yd~~~~~~~~ 349 (409)
.+++.... +.+..||+++++...
T Consensus 358 ~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~ 395 (433)
T 3bws_A 358 YLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE 395 (433)
T ss_dssp EEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE
T ss_pred EEEEEecCCCccccccccccccceEEEEEECCCCcEEE
Confidence 77776542 379999999987654
No 50
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=82.98 E-value=27 Score=31.69 Aligned_cols=191 Identities=12% Similarity=0.082 Sum_probs=96.6
Q ss_pred cccc-eEEEee-CCccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcce
Q 040444 94 SCNG-LLALSN-SDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFV 171 (409)
Q Consensus 94 sc~G-Ll~l~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~ 171 (409)
+-+| .|.+.. .++.+.+||+.|++....-... . ...++.+++.. .+-++. . . .
T Consensus 40 s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~----------~-~v~~~~~spdg-~~l~~~-~---~---------~ 94 (391)
T 1l0q_A 40 SPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG----------S-SPQGVAVSPDG-KQVYVT-N---M---------A 94 (391)
T ss_dssp CTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS----------S-SEEEEEECTTS-SEEEEE-E---T---------T
T ss_pred CCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC----------C-CccceEECCCC-CEEEEE-E---C---------C
Confidence 3344 343333 4668999999988765432211 1 23556666543 222222 1 0 1
Q ss_pred ecEEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcceee-ecC
Q 040444 172 EYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRL-LPQ 250 (409)
Q Consensus 172 ~~~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~-i~l 250 (409)
...+.+|+..++.-...-.... . ...-.+.-+|..-+++.... ..|..+|+.+.+... +..
T Consensus 95 ~~~v~v~d~~~~~~~~~~~~~~----------~---~~~~~~s~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~ 156 (391)
T 1l0q_A 95 SSTLSVIDTTSNTVAGTVKTGK----------S---PLGLALSPDGKKLYVTNNGD-----KTVSVINTVTKAVINTVSV 156 (391)
T ss_dssp TTEEEEEETTTTEEEEEEECSS----------S---EEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEECCCCeEEEEEeCCC----------C---cceEEECCCCCEEEEEeCCC-----CEEEEEECCCCcEEEEEec
Confidence 2367889888775432211110 0 00111122454333333322 259999998766543 222
Q ss_pred CCCCCCCCCceEEEEE-eCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEE
Q 040444 251 PNYGAREKDFVLDVGA-LEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVL 329 (409)
Q Consensus 251 P~~~~~~~~~~~~L~~-~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~il 329 (409)
.. ... .+.. -+|...++.......+.+|-+.. ......+... ....-+++.+ ++..++
T Consensus 157 ~~------~~~-~~~~~~dg~~l~~~~~~~~~v~~~d~~~------~~~~~~~~~~------~~~~~~~~~~--~g~~l~ 215 (391)
T 1l0q_A 157 GR------SPK-GIAVTPDGTKVYVANFDSMSISVIDTVT------NSVIDTVKVE------AAPSGIAVNP--EGTKAY 215 (391)
T ss_dssp CS------SEE-EEEECTTSSEEEEEETTTTEEEEEETTT------TEEEEEEECS------SEEEEEEECT--TSSEEE
T ss_pred CC------Ccc-eEEECCCCCEEEEEeCCCCEEEEEECCC------CeEEEEEecC------CCccceEECC--CCCEEE
Confidence 21 111 2222 25554444444445889997653 2233334321 1233456666 777777
Q ss_pred EEE---cCcEEEEEECCCCcEE
Q 040444 330 LEV---NGEKLVWYDWKRKKLK 348 (409)
Q Consensus 330 l~~---~~~~l~~yd~~~~~~~ 348 (409)
... .+..+..||+++++..
T Consensus 216 ~~~~~~~~~~v~~~d~~~~~~~ 237 (391)
T 1l0q_A 216 VTNVDKYFNTVSMIDTGTNKIT 237 (391)
T ss_dssp EEEECSSCCEEEEEETTTTEEE
T ss_pred EEecCcCCCcEEEEECCCCeEE
Confidence 765 4567999999988653
No 51
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=82.84 E-value=28 Score=31.71 Aligned_cols=98 Identities=9% Similarity=0.020 Sum_probs=50.7
Q ss_pred EEEEEECCCcceee-ecCCCCCCCCCCceEEEEEe-CCeEEEEEecCCCeEEEEEEeecCC---------CCce-----e
Q 040444 234 LIVAFDLGLEEFRL-LPQPNYGAREKDFVLDVGAL-EGHMCLMCNYDLVKVDVWMMKEYGL---------KESW-----S 297 (409)
Q Consensus 234 ~Il~fDl~~e~~~~-i~lP~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~~IW~l~~~~~---------~~~W-----~ 297 (409)
.|..+|+.+.+... +.... ... ..+... +|.+.++... ...+.||-++.... ...| .
T Consensus 311 ~i~i~d~~~~~~~~~~~~~~-----~~i-~~~~~s~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (425)
T 1r5m_A 311 SVRLWSLKQNTLLALSIVDG-----VPI-FAGRISQDGQKYAVAFM-DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIP 383 (425)
T ss_dssp EEEEEETTTTEEEEEEECTT-----CCE-EEEEECTTSSEEEEEET-TSCEEEEECHHHHC--------------CEECC
T ss_pred cEEEEECCCCcEeEecccCC-----ccE-EEEEEcCCCCEEEEEEC-CCeEEEEECCCCccceeeeecccccccCcccch
Confidence 58999998765433 22222 111 122222 4655555444 34899998874320 0011 1
Q ss_pred EEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECC
Q 040444 298 KMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWK 343 (409)
Q Consensus 298 ~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~ 343 (409)
....+..... .....-+.+.+ ++..|+....++.+..||++
T Consensus 384 ~~~~~~~~~~---~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 384 LYASYQSSQD---NDYIFDLSWNC--AGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEEECCTTC---CCCEEEEEECT--TSSEEEEEESSSCCEEEECC
T ss_pred hhhhhcCccc---CCceEEEEccC--CCceEEEEecCceEEEEeec
Confidence 2333322100 00345567776 77777777777779999986
No 52
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=82.64 E-value=21 Score=32.52 Aligned_cols=115 Identities=13% Similarity=0.114 Sum_probs=64.1
Q ss_pred cceEEECCeEEEEeecCCCCCCccEEEEEECCCcceee-ecCCCCCC-----CCCCceEEEEEeCCeEEEEEecCCCeEE
Q 040444 210 GYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRL-LPQPNYGA-----REKDFVLDVGALEGHMCLMCNYDLVKVD 283 (409)
Q Consensus 210 ~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~-i~lP~~~~-----~~~~~~~~L~~~~G~L~~~~~~~~~~~~ 283 (409)
..++..+|.+|...... .|.+||..+.+... .+++. .. ............+|.+++..... .
T Consensus 47 ~~p~v~~~~v~~~~~~g-------~v~a~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g----~ 114 (376)
T 3q7m_A 47 LHPALADNVVYAADRAG-------LVKALNADDGKEIWSVSLAE-KDGWFSKEPALLSGGVTVSGGHVYIGSEKA----Q 114 (376)
T ss_dssp CCCEEETTEEEEECTTS-------EEEEEETTTCCEEEEEECCC----CCSCCCCCEEEEEEEETTEEEEEETTS----E
T ss_pred eccEEECCEEEEEcCCC-------eEEEEEccCCceeeeecCcc-ccccccccCcccccCceEeCCEEEEEcCCC----E
Confidence 35678899998765432 49999997654332 33332 10 01122334566788887765332 3
Q ss_pred EEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcEEE
Q 040444 284 VWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKLKT 349 (409)
Q Consensus 284 IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~~~ 349 (409)
|..++-...+..|.... .... ...|+. .++.|++...+..|+.+|.++++...
T Consensus 115 l~a~d~~tG~~~W~~~~----~~~~----~~~p~~-----~~~~v~v~~~~g~l~~~d~~tG~~~W 167 (376)
T 3q7m_A 115 VYALNTSDGTVAWQTKV----AGEA----LSRPVV-----SDGLVLIHTSNGQLQALNEADGAVKW 167 (376)
T ss_dssp EEEEETTTCCEEEEEEC----SSCC----CSCCEE-----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEECCCCCEEEEEeC----CCce----EcCCEE-----ECCEEEEEcCCCeEEEEECCCCcEEE
Confidence 44455322245675422 1100 122322 23678887777789999999988654
No 53
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=82.55 E-value=22 Score=30.33 Aligned_cols=100 Identities=16% Similarity=0.078 Sum_probs=53.4
Q ss_pred EEEEEECCCcceeeecCCCCCCCCCCceEEEEE-eCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcc
Q 040444 234 LIVAFDLGLEEFRLLPQPNYGAREKDFVLDVGA-LEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFR 312 (409)
Q Consensus 234 ~Il~fDl~~e~~~~i~lP~~~~~~~~~~~~L~~-~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~ 312 (409)
.|..+|+.+.+...+.... . .. ..+.- -+|...++.......+.||.++..+ ... ..+... ..
T Consensus 154 ~l~~~~~~~~~~~~~~~~~-~----~~-~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~--~~~---~~~~~~-----~~ 217 (297)
T 2ojh_A 154 DIYSMDIDSGVETRLTHGE-G----RN-DGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG--SSV---ERITDS-----AY 217 (297)
T ss_dssp EEEEEETTTCCEEECCCSS-S----CE-EEEEECTTSSEEEEEECTTSSCEEEEEETTS--SCE---EECCCC-----SE
T ss_pred EEEEEECCCCcceEcccCC-C----cc-ccceECCCCCEEEEEecCCCCccEEEECCCC--CCc---EEEecC-----Cc
Confidence 4777777766555433222 1 11 12222 2566444444334489999988432 111 222211 11
Q ss_pred eeeeEEEEeecCCCEEEEEEcC-----------cEEEEEECCCCcEEEEE
Q 040444 313 FLRPLICSNEDGGDKVLLEVNG-----------EKLVWYDWKRKKLKTVK 351 (409)
Q Consensus 313 ~~~p~~~~~~~~~~~ill~~~~-----------~~l~~yd~~~~~~~~v~ 351 (409)
....+.+.+ +|..|++...+ ..|+.||+++++.+.+.
T Consensus 218 ~~~~~~~s~--dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 265 (297)
T 2ojh_A 218 GDWFPHPSP--SGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF 265 (297)
T ss_dssp EEEEEEECT--TSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE
T ss_pred ccCCeEECC--CCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeee
Confidence 233456666 77777665432 45999999998876653
No 54
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=81.86 E-value=28 Score=31.10 Aligned_cols=141 Identities=9% Similarity=-0.025 Sum_probs=72.8
Q ss_pred cEEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcceeee-cCC
Q 040444 173 YEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLL-PQP 251 (409)
Q Consensus 173 ~~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i-~lP 251 (409)
-.+.+|+..++.|+.+..+.... ... ..-...-+|.+...+..+. .|..+|+.+.++... .+.
T Consensus 30 ~~v~i~~~~~~~~~~~~~~~~h~-------~~v---~~~~~~~~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~~~ 93 (372)
T 1k8k_C 30 HEVHIYEKSGNKWVQVHELKEHN-------GQV---TGVDWAPDSNRIVTCGTDR------NAYVWTLKGRTWKPTLVIL 93 (372)
T ss_dssp SEEEEEEEETTEEEEEEEEECCS-------SCE---EEEEEETTTTEEEEEETTS------CEEEEEEETTEEEEEEECC
T ss_pred CEEEEEeCCCCcEEeeeeecCCC-------Ccc---cEEEEeCCCCEEEEEcCCC------eEEEEECCCCeeeeeEEee
Confidence 36788888888766554322100 000 0001112454443333332 388899887765432 222
Q ss_pred CCCCCCCCceEEEEEe-CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEE
Q 040444 252 NYGAREKDFVLDVGAL-EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLL 330 (409)
Q Consensus 252 ~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill 330 (409)
. . ..... .+.-. +|...++... ...+.||.++.. ..|.....+.... .....-+.+.+ ++..++.
T Consensus 94 ~--~-~~~v~-~~~~~~~~~~l~~~~~-d~~v~i~d~~~~---~~~~~~~~~~~~~----~~~i~~~~~~~--~~~~l~~ 159 (372)
T 1k8k_C 94 R--I-NRAAR-CVRWAPNEKKFAVGSG-SRVISICYFEQE---NDWWVCKHIKKPI----RSTVLSLDWHP--NSVLLAA 159 (372)
T ss_dssp C--C-SSCEE-EEEECTTSSEEEEEET-TSSEEEEEEETT---TTEEEEEEECTTC----CSCEEEEEECT--TSSEEEE
T ss_pred c--C-CCcee-EEEECCCCCEEEEEeC-CCEEEEEEecCC---Ccceeeeeeeccc----CCCeeEEEEcC--CCCEEEE
Confidence 2 1 11111 22222 5555444444 348999999852 3454444443221 12244567776 7777777
Q ss_pred EEcCcEEEEEECC
Q 040444 331 EVNGEKLVWYDWK 343 (409)
Q Consensus 331 ~~~~~~l~~yd~~ 343 (409)
...++.+..||++
T Consensus 160 ~~~dg~i~~~d~~ 172 (372)
T 1k8k_C 160 GSCDFKCRIFSAY 172 (372)
T ss_dssp EETTSCEEEEECC
T ss_pred EcCCCCEEEEEcc
Confidence 7667779999964
No 55
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=80.87 E-value=32 Score=31.11 Aligned_cols=32 Identities=9% Similarity=0.131 Sum_probs=23.8
Q ss_pred eeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcE
Q 040444 314 LRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKL 347 (409)
Q Consensus 314 ~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~ 347 (409)
..-+.+.+ ++..++....++.+..||+++++.
T Consensus 248 v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~ 279 (408)
T 4a11_B 248 VNGLCFTS--DGLHLLTVGTDNRMRLWNSSNGEN 279 (408)
T ss_dssp EEEEEECT--TSSEEEEEETTSCEEEEETTTCCB
T ss_pred eeEEEEcC--CCCEEEEecCCCeEEEEECCCCcc
Confidence 44566776 777777777777899999998653
No 56
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=79.67 E-value=32 Score=30.32 Aligned_cols=111 Identities=9% Similarity=-0.025 Sum_probs=68.2
Q ss_pred CeEEEEeecCCCCCCccEEEEEECCCcce-eeecCCCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEEEeecCCCCc
Q 040444 217 GVVHWVSPRRPEFGIGNLIVAFDLGLEEF-RLLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLKES 295 (409)
Q Consensus 217 G~lywl~~~~~~~~~~~~Il~fDl~~e~~-~~i~lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~ 295 (409)
|.+|--+.... ...|..+|+.+.+- ..+++|. .. +...+...+++|+++..... . +++.+- ..
T Consensus 32 g~Lyvstg~~~----~s~v~~iD~~tg~v~~~i~l~~-~~----fgeGi~~~g~~lyv~t~~~~-~--v~viD~----~t 95 (266)
T 2iwa_A 32 DTLFESTGLYG----RSSVRQVALQTGKVENIHKMDD-SY----FGEGLTLLNEKLYQVVWLKN-I--GFIYDR----RT 95 (266)
T ss_dssp TEEEEEECSTT----TCEEEEEETTTCCEEEEEECCT-TC----CEEEEEEETTEEEEEETTCS-E--EEEEET----TT
T ss_pred CeEEEECCCCC----CCEEEEEECCCCCEEEEEecCC-Cc----ceEEEEEeCCEEEEEEecCC-E--EEEEEC----CC
Confidence 67776543221 23699999997664 4467766 22 22245556788888875433 3 555553 23
Q ss_pred eeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcE-EEEEE
Q 040444 296 WSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKL-KTVKI 352 (409)
Q Consensus 296 W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~-~~v~~ 352 (409)
-..+.+|+.. . ..+.++.. +|+.+++......|...|+++.+. +.|.+
T Consensus 96 ~~v~~~i~~g-~------~~g~glt~--Dg~~l~vs~gs~~l~viD~~t~~v~~~I~V 144 (266)
T 2iwa_A 96 LSNIKNFTHQ-M------KDGWGLAT--DGKILYGSDGTSILYEIDPHTFKLIKKHNV 144 (266)
T ss_dssp TEEEEEEECC-S------SSCCEEEE--CSSSEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred CcEEEEEECC-C------CCeEEEEE--CCCEEEEECCCCeEEEEECCCCcEEEEEEE
Confidence 4566677653 1 12356666 777777765567899999999775 45554
No 57
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=78.56 E-value=6.1 Score=36.02 Aligned_cols=142 Identities=6% Similarity=-0.035 Sum_probs=65.1
Q ss_pred EEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcc-eeee-cCC
Q 040444 174 EVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEE-FRLL-PQP 251 (409)
Q Consensus 174 ~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~-~~~i-~lP 251 (409)
.+.||+..++.|+.+..+.... ... ..-...-+|.+-..+..+. .|..+|+.+.+ +..+ .+.
T Consensus 34 ~i~iw~~~~~~~~~~~~~~~h~-------~~v---~~~~~s~~~~~l~s~s~d~------~v~vwd~~~~~~~~~~~~~~ 97 (377)
T 3dwl_C 34 QVELYEQDGNGWKHARTFSDHD-------KIV---TCVDWAPKSNRIVTCSQDR------NAYVYEKRPDGTWKQTLVLL 97 (377)
T ss_dssp CBCEEEEETTEEEECCCBCCCS-------SCE---EEEEECTTTCCEEEEETTS------SEEEC------CCCCEEECC
T ss_pred EEEEEEccCCceEEEEEEecCC-------ceE---EEEEEeCCCCEEEEEeCCC------eEEEEEcCCCCceeeeeEec
Confidence 5668888888887765543100 000 0000111343322223222 28888888766 3322 111
Q ss_pred CCCCCCCCceEEEEEe-CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEE
Q 040444 252 NYGAREKDFVLDVGAL-EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLL 330 (409)
Q Consensus 252 ~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill 330 (409)
. . .... ..+.-. +|.+.++... ...+.||-++.. ..|.....+.... .....-+.+.+ ++..++.
T Consensus 98 ~--~-~~~v-~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~---~~~~~~~~~~~~h----~~~v~~~~~~~--~~~~l~~ 163 (377)
T 3dwl_C 98 R--L-NRAA-TFVRWSPNEDKFAVGSG-ARVISVCYFEQE---NDWWVSKHLKRPL----RSTILSLDWHP--NNVLLAA 163 (377)
T ss_dssp C--C-SSCE-EEEECCTTSSCCEEEES-SSCEEECCC--------CCCCEEECSSC----CSCEEEEEECT--TSSEEEE
T ss_pred c--c-CCce-EEEEECCCCCEEEEEec-CCeEEEEEECCc---ccceeeeEeeccc----CCCeEEEEEcC--CCCEEEE
Confidence 1 1 1111 122222 5555444444 348999988752 3455555554311 12244567777 7777776
Q ss_pred EEcCcEEEEEECCCC
Q 040444 331 EVNGEKLVWYDWKRK 345 (409)
Q Consensus 331 ~~~~~~l~~yd~~~~ 345 (409)
...++.+..||++++
T Consensus 164 ~~~d~~i~iwd~~~~ 178 (377)
T 3dwl_C 164 GCADRKAYVLSAYVR 178 (377)
T ss_dssp EESSSCEEEEEECCS
T ss_pred EeCCCEEEEEEEEec
Confidence 666777999998643
No 58
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=77.61 E-value=37 Score=29.99 Aligned_cols=211 Identities=7% Similarity=-0.031 Sum_probs=97.6
Q ss_pred ccceEEEee-CCccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceec
Q 040444 95 CNGLLALSN-SDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEY 173 (409)
Q Consensus 95 c~GLl~l~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~ 173 (409)
.+|-|.+.. ....++++||.+++...+.... .....++.+|+.. . ++....... ....
T Consensus 54 ~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~----------~~~~~~i~~~~dg-~--l~v~~~~~~--------~~~~ 112 (333)
T 2dg1_A 54 RQGQLFLLDVFEGNIFKINPETKEIKRPFVSH----------KANPAAIKIHKDG-R--LFVCYLGDF--------KSTG 112 (333)
T ss_dssp TTSCEEEEETTTCEEEEECTTTCCEEEEEECS----------SSSEEEEEECTTS-C--EEEEECTTS--------SSCC
T ss_pred CCCCEEEEECCCCEEEEEeCCCCcEEEEeeCC----------CCCcceEEECCCC-c--EEEEeCCCC--------CCCc
Confidence 466665543 4567999999999877653211 1124566677553 2 222211000 0113
Q ss_pred EEEEEEcCCCceEE-ccccCcccccceeeeeeeeecccceEE--ECCeEEEEeecCCCCCCccEEEEEECCCcceeeecC
Q 040444 174 EVKVFSLKNRSWTR-VKKLPNYLRFMFQFYFHLLHRRGYGVY--VNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQ 250 (409)
Q Consensus 174 ~~~vyss~t~~Wr~-~~~~p~~~~~~~~~~~~~~~~~~~~v~--~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~l 250 (409)
.+.+|+..++.-+. +...... .....+. -+|.+|.-............|..+|..+.++..+.-
T Consensus 113 ~i~~~d~~~~~~~~~~~~~~~~-------------~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 179 (333)
T 2dg1_A 113 GIFAATENGDNLQDIIEDLSTA-------------YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ 179 (333)
T ss_dssp EEEEECTTSCSCEEEECSSSSC-------------CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE
T ss_pred eEEEEeCCCCEEEEEEccCccC-------------CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec
Confidence 56677777665442 2211100 0011122 257665543321100112358999988766654421
Q ss_pred CCCCCCCCCceEEEEE-eCCe-EEEEEecCCCeEEEEEEeecCCCCceeEE-EEeecccccCCcceeeeEEEEeecCCCE
Q 040444 251 PNYGAREKDFVLDVGA-LEGH-MCLMCNYDLVKVDVWMMKEYGLKESWSKM-FSIDRCRSISSFRFLRPLICSNEDGGDK 327 (409)
Q Consensus 251 P~~~~~~~~~~~~L~~-~~G~-L~~~~~~~~~~~~IW~l~~~~~~~~W~~~-~~I~~~~~~~~~~~~~p~~~~~~~~~~~ 327 (409)
.. . . ...+.. -+|. |+++... ...+.+|-++..+ ...... ..+... ..+ .....-+++.+ +|.
T Consensus 180 ~~-~----~-~~~i~~~~dg~~l~v~~~~-~~~i~~~d~~~~g--~~~~~~~~~~~~~-~~~-~~~~~~i~~d~--~G~- 245 (333)
T 2dg1_A 180 NI-S----V-ANGIALSTDEKVLWVTETT-ANRLHRIALEDDG--VTIQPFGATIPYY-FTG-HEGPDSCCIDS--DDN- 245 (333)
T ss_dssp EE-S----S-EEEEEECTTSSEEEEEEGG-GTEEEEEEECTTS--SSEEEEEEEEEEE-CCS-SSEEEEEEEBT--TCC-
T ss_pred CC-C----c-ccceEECCCCCEEEEEeCC-CCeEEEEEecCCC--cCcccccceEEEe-cCC-CCCCCceEECC--CCC-
Confidence 11 0 0 112332 2554 6555433 3367777665322 222111 111110 000 01122345554 554
Q ss_pred EEEEE-cCcEEEEEECCCCcEEEEEEe
Q 040444 328 VLLEV-NGEKLVWYDWKRKKLKTVKID 353 (409)
Q Consensus 328 ill~~-~~~~l~~yd~~~~~~~~v~~~ 353 (409)
+++.. ....|..||++++.++.+...
T Consensus 246 l~v~~~~~~~v~~~d~~g~~~~~~~~~ 272 (333)
T 2dg1_A 246 LYVAMYGQGRVLVFNKRGYPIGQILIP 272 (333)
T ss_dssp EEEEEETTTEEEEECTTSCEEEEEECT
T ss_pred EEEEEcCCCEEEEECCCCCEEEEEEcC
Confidence 56554 346799999987777766543
No 59
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=77.13 E-value=40 Score=30.04 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=46.2
Q ss_pred CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcC-cEEEEE--ECCC
Q 040444 268 EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNG-EKLVWY--DWKR 344 (409)
Q Consensus 268 ~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~-~~l~~y--d~~~ 344 (409)
+|+..++.......+.||.++..+ .+.....+.... ....-+++.+ +|..|++...+ ..+..| |.++
T Consensus 250 dG~~l~v~~~~~~~v~v~~~~~~g---~~~~~~~~~~~~-----~~~~~~~~sp--dg~~l~v~~~~~~~v~v~~~d~~t 319 (347)
T 3hfq_A 250 DGHFLYVSNRGYNTLAVFAVTADG---HLTLIQQISTEG-----DFPRDFDLDP--TEAFVVVVNQNTDNATLYARDLTS 319 (347)
T ss_dssp TSCEEEEEEETTTEEEEEEECGGG---CEEEEEEEECSS-----SCCCEEEECT--TSSEEEEEETTTTEEEEEEECTTT
T ss_pred CCCEEEEEeCCCCEEEEEEECCCC---cEEEeEEEecCC-----CCcCeEEECC--CCCEEEEEEcCCCcEEEEEEeCCC
Confidence 676433443334589999998532 455665555421 1123467777 87777776543 556666 8889
Q ss_pred CcEEEEE
Q 040444 345 KKLKTVK 351 (409)
Q Consensus 345 ~~~~~v~ 351 (409)
++++.+.
T Consensus 320 g~l~~~~ 326 (347)
T 3hfq_A 320 GKLSLLQ 326 (347)
T ss_dssp CCEEEEE
T ss_pred CeEEecc
Confidence 9998775
No 60
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=76.96 E-value=67 Score=32.55 Aligned_cols=67 Identities=6% Similarity=0.075 Sum_probs=40.6
Q ss_pred CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcE
Q 040444 268 EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKL 347 (409)
Q Consensus 268 ~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~ 347 (409)
+|.+.++... ...+.+|-+.. ......+... .....-+.+.+ ++..++....++.+..||+.+++.
T Consensus 197 ~~~~l~~~~~-dg~i~~~d~~~------~~~~~~~~~~-----~~~v~~~~~~~--~~~~l~~~~~dg~v~vwd~~~~~~ 262 (814)
T 3mkq_A 197 DKPYMITASD-DLTIKIWDYQT------KSCVATLEGH-----MSNVSFAVFHP--TLPIIISGSEDGTLKIWNSSTYKV 262 (814)
T ss_dssp TCCEEEEECT-TSEEEEEETTT------TEEEEEEECC-----SSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCSE
T ss_pred CCCEEEEEeC-CCEEEEEECCC------CcEEEEEcCC-----CCCEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCcE
Confidence 5555454444 34899997653 1233333321 12244566777 777777777677799999998765
Q ss_pred E
Q 040444 348 K 348 (409)
Q Consensus 348 ~ 348 (409)
.
T Consensus 263 ~ 263 (814)
T 3mkq_A 263 E 263 (814)
T ss_dssp E
T ss_pred E
Confidence 3
No 61
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=76.86 E-value=38 Score=29.63 Aligned_cols=96 Identities=15% Similarity=0.169 Sum_probs=53.5
Q ss_pred EEEEECCCcceee-ecCCCCCCCCCCceEEEEE-eCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcc
Q 040444 235 IVAFDLGLEEFRL-LPQPNYGAREKDFVLDVGA-LEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFR 312 (409)
Q Consensus 235 Il~fDl~~e~~~~-i~lP~~~~~~~~~~~~L~~-~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~ 312 (409)
|..+|+.+.+... +.... .... .+.- -+|.+.+....+ ..+.||-+... .....+.... ..
T Consensus 131 i~iwd~~~~~~~~~~~~~~-----~~v~-~~~~~~~~~~l~~~~~d-~~i~~wd~~~~------~~~~~~~~~~----~~ 193 (312)
T 4ery_A 131 VRIWDVKTGKCLKTLPAHS-----DPVS-AVHFNRDGSLIVSSSYD-GLCRIWDTASG------QCLKTLIDDD----NP 193 (312)
T ss_dssp EEEEETTTCCEEEEECCCS-----SCEE-EEEECTTSSEEEEEETT-SCEEEEETTTC------CEEEEECCSS----CC
T ss_pred EEEEECCCCEEEEEecCCC-----CcEE-EEEEcCCCCEEEEEeCC-CcEEEEECCCC------ceeeEEeccC----CC
Confidence 8889988765432 22211 1111 2222 256655555443 48999987641 1222222111 11
Q ss_pred eeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcEEE
Q 040444 313 FLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKLKT 349 (409)
Q Consensus 313 ~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~~~ 349 (409)
...-+.+.+ ++..++....++.+..||+++++...
T Consensus 194 ~~~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~ 228 (312)
T 4ery_A 194 PVSFVKFSP--NGKYILAATLDNTLKLWDYSKGKCLK 228 (312)
T ss_dssp CEEEEEECT--TSSEEEEEETTTEEEEEETTTTEEEE
T ss_pred ceEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEE
Confidence 233456666 77777777777889999999887543
No 62
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=76.81 E-value=43 Score=30.31 Aligned_cols=97 Identities=9% Similarity=-0.071 Sum_probs=50.0
Q ss_pred EEEEECCCcceee-ecCCCCCCCCCCceEEEEEe--CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCc
Q 040444 235 IVAFDLGLEEFRL-LPQPNYGAREKDFVLDVGAL--EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSF 311 (409)
Q Consensus 235 Il~fDl~~e~~~~-i~lP~~~~~~~~~~~~L~~~--~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~ 311 (409)
|..+|+.+.+... +.... .......+.-. ++.+.++... ...+.||-+.... ....+... .
T Consensus 206 v~~wd~~~~~~~~~~~~~~----~~~~v~~v~~sp~~~~~la~g~~-d~~i~~wd~~~~~------~~~~~~~~-----~ 269 (357)
T 4g56_B 206 ILLWDTRKPKPATRIDFCA----SDTIPTSVTWHPEKDDTFACGDE-TGNVSLVNIKNPD------SAQTSAVH-----S 269 (357)
T ss_dssp EEECCTTSSSCBCBCCCTT----CCSCEEEEEECTTSTTEEEEEES-SSCEEEEESSCGG------GCEEECCC-----S
T ss_pred eEEEECCCCceeeeeeecc----ccccccchhhhhcccceEEEeec-ccceeEEECCCCc------EeEEEecc-----c
Confidence 7888887654322 22222 11111123322 3455444443 3489999876421 12222211 1
Q ss_pred ceeeeEEEEeecCCCEEEE-EEcCcEEEEEECCCCcEEE
Q 040444 312 RFLRPLICSNEDGGDKVLL-EVNGEKLVWYDWKRKKLKT 349 (409)
Q Consensus 312 ~~~~p~~~~~~~~~~~ill-~~~~~~l~~yd~~~~~~~~ 349 (409)
....-+++.+ +++.++. ...++.+..||++++++-.
T Consensus 270 ~~v~~l~~sp--~~~~~lasgs~D~~i~iwd~~~~~~~~ 306 (357)
T 4g56_B 270 QNITGLAYSY--HSSPFLASISEDCTVAVLDADFSEVFR 306 (357)
T ss_dssp SCEEEEEECS--SSSCCEEEEETTSCEEEECTTSCEEEE
T ss_pred eeEEEEEEcC--CCCCEEEEEeCCCEEEEEECCCCcEeE
Confidence 2234466766 6555444 4456679999999987643
No 63
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=76.51 E-value=44 Score=30.22 Aligned_cols=182 Identities=10% Similarity=0.014 Sum_probs=91.1
Q ss_pred CCccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEEEEEcCCC
Q 040444 104 SDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNR 183 (409)
Q Consensus 104 ~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~vyss~t~ 183 (409)
.++.+.|||..+++....-... ....++.+++.. .+ ++... ...-.+.+++..++
T Consensus 10 ~d~~v~v~d~~~~~~~~~~~~~-----------~~~~~~~~s~dg-~~-l~~~~------------~~d~~i~v~d~~~~ 64 (391)
T 1l0q_A 10 ESDNISVIDVTSNKVTATIPVG-----------SNPMGAVISPDG-TK-VYVAN------------AHSNDVSIIDTATN 64 (391)
T ss_dssp TTTEEEEEETTTTEEEEEEECS-----------SSEEEEEECTTS-SE-EEEEE------------GGGTEEEEEETTTT
T ss_pred CCCEEEEEECCCCeEEEEeecC-----------CCcceEEECCCC-CE-EEEEC------------CCCCeEEEEECCCC
Confidence 4567899999888765432111 113455666543 22 22221 11346788898877
Q ss_pred ceEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcceee-ecCCCCCCCCCCceE
Q 040444 184 SWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRL-LPQPNYGAREKDFVL 262 (409)
Q Consensus 184 ~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~-i~lP~~~~~~~~~~~ 262 (409)
.-...-..+... ..+ .+.-+|..-+.+.... ..|..+|+.+.+... +.... .. .
T Consensus 65 ~~~~~~~~~~~v-------~~~------~~spdg~~l~~~~~~~-----~~v~v~d~~~~~~~~~~~~~~------~~-~ 119 (391)
T 1l0q_A 65 NVIATVPAGSSP-------QGV------AVSPDGKQVYVTNMAS-----STLSVIDTTSNTVAGTVKTGK------SP-L 119 (391)
T ss_dssp EEEEEEECSSSE-------EEE------EECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEECSS------SE-E
T ss_pred eEEEEEECCCCc-------cce------EECCCCCEEEEEECCC-----CEEEEEECCCCeEEEEEeCCC------Cc-c
Confidence 543321111000 011 1112354333333221 259999998766533 33222 11 1
Q ss_pred EEEEe-CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEE-cCcEEEEE
Q 040444 263 DVGAL-EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEV-NGEKLVWY 340 (409)
Q Consensus 263 ~L~~~-~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~-~~~~l~~y 340 (409)
.+... +|+..++.......+.+|-++. . .....+.... ....+.+.+ ++..+++.. .++.+..|
T Consensus 120 ~~~~s~dg~~l~~~~~~~~~v~~~d~~~----~--~~~~~~~~~~------~~~~~~~~~--dg~~l~~~~~~~~~v~~~ 185 (391)
T 1l0q_A 120 GLALSPDGKKLYVTNNGDKTVSVINTVT----K--AVINTVSVGR------SPKGIAVTP--DGTKVYVANFDSMSISVI 185 (391)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTT----T--EEEEEEECCS------SEEEEEECT--TSSEEEEEETTTTEEEEE
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEECCC----C--cEEEEEecCC------CcceEEECC--CCCEEEEEeCCCCEEEEE
Confidence 23332 5654444444445899997653 1 2223333211 124456666 777776654 34679999
Q ss_pred ECCCCcEEE
Q 040444 341 DWKRKKLKT 349 (409)
Q Consensus 341 d~~~~~~~~ 349 (409)
|+++++...
T Consensus 186 d~~~~~~~~ 194 (391)
T 1l0q_A 186 DTVTNSVID 194 (391)
T ss_dssp ETTTTEEEE
T ss_pred ECCCCeEEE
Confidence 999987644
No 64
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=75.21 E-value=49 Score=30.19 Aligned_cols=72 Identities=8% Similarity=0.023 Sum_probs=42.0
Q ss_pred CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCC-EEEEEEcCcEEEEEECCCCc
Q 040444 268 EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGD-KVLLEVNGEKLVWYDWKRKK 346 (409)
Q Consensus 268 ~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~-~ill~~~~~~l~~yd~~~~~ 346 (409)
+|.+.++... ...+.||-+... .....+.... .....-+.+.+ ++. .++....++.+..||+++.+
T Consensus 258 ~~~~l~~~~~-dg~i~i~d~~~~------~~~~~~~~~~----~~~v~~~~~~~--~~~~~l~~g~~dg~i~vwd~~~~~ 324 (420)
T 3vl1_A 258 YGKYVIAGHV-SGVITVHNVFSK------EQTIQLPSKF----TCSCNSLTVDG--NNANYIYAGYENGMLAQWDLRSPE 324 (420)
T ss_dssp TTEEEEEEET-TSCEEEEETTTC------CEEEEECCTT----SSCEEEEEECS--SCTTEEEEEETTSEEEEEETTCTT
T ss_pred CCCEEEEEcC-CCeEEEEECCCC------ceeEEccccc----CCCceeEEEeC--CCCCEEEEEeCCCeEEEEEcCCCc
Confidence 4555554444 348999987641 1233332211 12244567766 666 67777777889999999864
Q ss_pred --EEEEEE
Q 040444 347 --LKTVKI 352 (409)
Q Consensus 347 --~~~v~~ 352 (409)
+..+..
T Consensus 325 ~~~~~~~~ 332 (420)
T 3vl1_A 325 CPVGEFLI 332 (420)
T ss_dssp SCSEEEEE
T ss_pred Cchhhhhc
Confidence 344443
No 65
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=73.64 E-value=50 Score=29.56 Aligned_cols=63 Identities=10% Similarity=0.161 Sum_probs=38.5
Q ss_pred CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEEC
Q 040444 268 EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDW 342 (409)
Q Consensus 268 ~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~ 342 (409)
+|.+.+.... ...+.||.++. ..|.....+.-. .....-+.+.+ +|..|+....++.+..||.
T Consensus 161 ~~~~l~s~s~-d~~i~~w~~~~----~~~~~~~~~~~h-----~~~v~~l~~sp--~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 161 SQELLASASY-DDTVKLYREEE----DDWVCCATLEGH-----ESTVWSLAFDP--SGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp SSSCEEEEET-TSCEEEEEEET----TEEEEEEEECCC-----SSCEEEEEECT--TSSEEEEEETTSCEEEEEE
T ss_pred CCCEEEEEeC-CCcEEEEEecC----CCEEEEEEecCC-----CCceEEEEECC--CCCEEEEEeCCCeEEEecc
Confidence 4555444444 34899998774 346655554321 12244567777 7776666666777888875
No 66
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=73.53 E-value=33 Score=32.14 Aligned_cols=116 Identities=7% Similarity=0.003 Sum_probs=61.6
Q ss_pred ECCeEEEEeecCCCCCCccEEEEEECCCcceeeecCCCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEEEeecCCCC
Q 040444 215 VNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLKE 294 (409)
Q Consensus 215 ~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~~~ 294 (409)
-+|.+||..... ..|..+|+.+.+...+.... . ... +.+...++.|+++..... ..||+++..+
T Consensus 140 ~~g~lyv~d~~~------~~I~~id~~~g~~~~~~~~~-~---~~~-ia~~~~g~~l~~~d~~~~--~~I~~~d~~~--- 203 (409)
T 3hrp_A 140 GNNTVLAYQRDD------PRVRLISVDDNKVTTVHPGF-K---GGK-PAVTKDKQRVYSIGWEGT--HTVYVYMKAS--- 203 (409)
T ss_dssp STTEEEEEETTT------TEEEEEETTTTEEEEEEETC-C---BCB-CEECTTSSEEEEEBSSTT--CEEEEEEGGG---
T ss_pred CCCCEEEEecCC------CcEEEEECCCCEEEEeeccC-C---CCc-eeEecCCCcEEEEecCCC--ceEEEEEcCC---
Confidence 468999886543 25999999987766553322 1 111 222222334444433222 2677777532
Q ss_pred ceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcEEEE
Q 040444 295 SWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKLKTV 350 (409)
Q Consensus 295 ~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~~~v 350 (409)
.|.. ..+..... .......-+++.+ +++.|++......++.||++++....+
T Consensus 204 ~~~~-~~~g~~~~-~~~~~p~~iav~p--~~g~lyv~d~~~~I~~~d~~~~~~~~~ 255 (409)
T 3hrp_A 204 GWAP-TRIGQLGS-TFSGKIGAVALDE--TEEWLYFVDSNKNFGRFNVKTQEVTLI 255 (409)
T ss_dssp TTCE-EEEEECCT-TSCSCCCBCEECT--TSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred Ccee-EEeeeccc-hhcCCcEEEEEeC--CCCeEEEEECCCcEEEEECCCCCEEEE
Confidence 2431 12211000 0111223456655 567788865456799999998876555
No 67
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=72.51 E-value=83 Score=31.55 Aligned_cols=146 Identities=10% Similarity=0.014 Sum_probs=77.2
Q ss_pred cEEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcc---eeeec
Q 040444 173 YEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEE---FRLLP 249 (409)
Q Consensus 173 ~~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~---~~~i~ 249 (409)
..+.+++..++.|+.+..... .....+..+|.+|..+.... ....|+.+|+.+.. |..+-
T Consensus 252 ~~l~~~~~~~~~~~~l~~~~~--------------~~~~~~~~~g~l~~~s~~~~---~~~~l~~~d~~~~~~~~~~~l~ 314 (695)
T 2bkl_A 252 NDVYWKRPGEKDFRLLVKGVG--------------AKYEVHAWKDRFYVLTDEGA---PRQRVFEVDPAKPARASWKEIV 314 (695)
T ss_dssp EEEEEECTTCSSCEEEEECSS--------------CCEEEEEETTEEEEEECTTC---TTCEEEEEBTTBCSGGGCEEEE
T ss_pred eEEEEEcCCCCceEEeecCCC--------------ceEEEEecCCcEEEEECCCC---CCCEEEEEeCCCCCccCCeEEe
Confidence 345555665677877643220 01122345677655544221 23469999997643 55543
Q ss_pred CCCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEE
Q 040444 250 QPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVL 329 (409)
Q Consensus 250 lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~il 329 (409)
.+. .. ... ..+...+|.|.+....+. ...||+++-.+ . ....|.... ......+.+.+ +++.++
T Consensus 315 ~~~-~~--~~l-~~~~~~~~~lv~~~~~dg-~~~l~~~~~~g--~---~~~~l~~~~----~~~v~~~~~s~--d~~~l~ 378 (695)
T 2bkl_A 315 PED-SS--ASL-LSVSIVGGHLSLEYLKDA-TSEVRVATLKG--K---PVRTVQLPG----VGAASNLMGLE--DLDDAY 378 (695)
T ss_dssp CCC-SS--CEE-EEEEEETTEEEEEEEETT-EEEEEEEETTC--C---EEEECCCSS----SSEECCCBSCT--TCSEEE
T ss_pred cCC-CC--CeE-EEEEEECCEEEEEEEECC-EEEEEEEeCCC--C---eeEEecCCC----CeEEEEeecCC--CCCEEE
Confidence 322 11 111 123344888877665543 78899887423 1 333444321 11122233444 667777
Q ss_pred EEEcC----cEEEEEECCCCcEEEEE
Q 040444 330 LEVNG----EKLVWYDWKRKKLKTVK 351 (409)
Q Consensus 330 l~~~~----~~l~~yd~~~~~~~~v~ 351 (409)
+.... ..++.||+.+++.+.+.
T Consensus 379 ~~~ss~~~P~~v~~~d~~~g~~~~l~ 404 (695)
T 2bkl_A 379 YVFTSFTTPRQIYKTSVSTGKSELWA 404 (695)
T ss_dssp EEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred EEEcCCCCCCEEEEEECCCCcEEEEe
Confidence 65432 45999999998866553
No 68
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=72.32 E-value=50 Score=28.92 Aligned_cols=31 Identities=10% Similarity=0.076 Sum_probs=21.7
Q ss_pred eeeEEEEeecCCCEEEEEEcCcEEEEEECCCCc
Q 040444 314 LRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKK 346 (409)
Q Consensus 314 ~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~ 346 (409)
..-+++.+ +|..|+-...++.|..||+++++
T Consensus 309 v~~l~~s~--dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 309 CTSLAWSA--DGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEEECT--TSSEEEEEETTSCEEEEEEEC--
T ss_pred EEEEEECC--CCCEEEEEeCCCEEEEEeCCCcC
Confidence 34467777 77777666667789999998874
No 69
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=71.62 E-value=46 Score=28.20 Aligned_cols=187 Identities=12% Similarity=0.067 Sum_probs=90.8
Q ss_pred ccceEEEeeCCccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecE
Q 040444 95 CNGLLALSNSDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYE 174 (409)
Q Consensus 95 c~GLl~l~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~ 174 (409)
.+|-+.+......++++||.++....++... .....++.+|+.. . +.... . ....
T Consensus 76 ~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~----------~~~p~~i~~~~~g-~--l~v~~-~-----------~~~~ 130 (270)
T 1rwi_B 76 GAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG----------LNYPEGLAVDTQG-A--VYVAD-R-----------GNNR 130 (270)
T ss_dssp TTCCEEEEETTTEEEEECTTCSCCEECCCCS----------CSSEEEEEECTTC-C--EEEEE-G-----------GGTE
T ss_pred CCCCEEEEcCCCEEEEEeCCCceEeeeecCC----------cCCCcceEECCCC-C--EEEEE-C-----------CCCE
Confidence 3566655554567999999888766554322 1224567777643 2 22221 1 1224
Q ss_pred EEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEE--CCeEEEEeecCCCCCCccEEEEEECCCcceeeecCCC
Q 040444 175 VKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYV--NGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPN 252 (409)
Q Consensus 175 ~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~ 252 (409)
+.+|+.++.......... . ....++.+ +|.+|+..... ..|..||..+..........
T Consensus 131 i~~~~~~~~~~~~~~~~~------------~--~~p~~i~~~~~g~l~v~~~~~------~~i~~~~~~~~~~~~~~~~~ 190 (270)
T 1rwi_B 131 VVKLAAGSKTQTVLPFTG------------L--NDPDGVAVDNSGNVYVTDTDN------NRVVKLEAESNNQVVLPFTD 190 (270)
T ss_dssp EEEECTTCCSCEECCCCS------------C--CSCCCEEECTTCCEEEEEGGG------TEEEEECTTTCCEEECCCSS
T ss_pred EEEEECCCceeEeecccc------------C--CCceeEEEeCCCCEEEEECCC------CEEEEEecCCCceEeecccC
Confidence 556665554433221111 0 01122333 58877654432 25999999876654332221
Q ss_pred CCCCCCCceEEEEEe-CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEE
Q 040444 253 YGAREKDFVLDVGAL-EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLE 331 (409)
Q Consensus 253 ~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~ 331 (409)
. .. ...+... +|.|++...... .+.+|-.+. ..... +... ......-+++.+ +|. |++.
T Consensus 191 --~--~~-p~~i~~d~~g~l~v~~~~~~-~v~~~~~~~---~~~~~----~~~~----~~~~p~~i~~~~--~g~-l~v~ 250 (270)
T 1rwi_B 191 --I--TA-PWGIAVDEAGTVYVTEHNTN-QVVKLLAGS---TTSTV----LPFT----GLNTPLAVAVDS--DRT-VYVA 250 (270)
T ss_dssp --C--CS-EEEEEECTTCCEEEEETTTS-CEEEECTTC---SCCEE----CCCC----SCSCEEEEEECT--TCC-EEEE
T ss_pred --C--CC-ceEEEECCCCCEEEEECCCC-cEEEEcCCC---Cccee----eccC----CCCCceeEEECC--CCC-EEEE
Confidence 1 11 1234443 567777664432 555554322 11111 1111 111223344544 654 6655
Q ss_pred E-cCcEEEEEECCCCc
Q 040444 332 V-NGEKLVWYDWKRKK 346 (409)
Q Consensus 332 ~-~~~~l~~yd~~~~~ 346 (409)
. ....+..|++..++
T Consensus 251 ~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 251 DRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EGGGTEEEEECCCGGG
T ss_pred ECCCCEEEEEcCCCcc
Confidence 4 34568888887654
No 70
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=71.29 E-value=63 Score=29.65 Aligned_cols=100 Identities=16% Similarity=0.106 Sum_probs=54.6
Q ss_pred EEEEECCCcceeeecCCCCCCCCCCceEEEEE-eCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcce
Q 040444 235 IVAFDLGLEEFRLLPQPNYGAREKDFVLDVGA-LEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRF 313 (409)
Q Consensus 235 Il~fDl~~e~~~~i~lP~~~~~~~~~~~~L~~-~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~ 313 (409)
|..+|+.+.+......+.........-..+.. -+|.+.+.... ...+.+|-++.. .....+... ...
T Consensus 146 i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~-d~~v~~~d~~~~------~~~~~~~~~-----~~~ 213 (433)
T 3bws_A 146 MDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQ-ANAVHVFDLKTL------AYKATVDLT-----GKW 213 (433)
T ss_dssp EEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGG-GTEEEEEETTTC------CEEEEEECS-----SSS
T ss_pred EEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECC-CCEEEEEECCCc------eEEEEEcCC-----CCC
Confidence 89999997765543222100001111112222 26776665544 348999987631 122333321 112
Q ss_pred eeeEEEEeecCCCEEEEEE-cCcEEEEEECCCCcEE
Q 040444 314 LRPLICSNEDGGDKVLLEV-NGEKLVWYDWKRKKLK 348 (409)
Q Consensus 314 ~~p~~~~~~~~~~~ill~~-~~~~l~~yd~~~~~~~ 348 (409)
..-+++.+ ++..+++.. .++.+..||+++++..
T Consensus 214 ~~~~~~~~--~~~~l~~~~~~~~~i~~~d~~~~~~~ 247 (433)
T 3bws_A 214 SKILLYDP--IRDLVYCSNWISEDISVIDRKTKLEI 247 (433)
T ss_dssp EEEEEEET--TTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred eeEEEEcC--CCCEEEEEecCCCcEEEEECCCCcEE
Confidence 34466776 777777665 4567999999988754
No 71
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=70.89 E-value=54 Score=28.73 Aligned_cols=192 Identities=8% Similarity=-0.003 Sum_probs=96.1
Q ss_pred cceEEEee-CCccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecE
Q 040444 96 NGLLALSN-SDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYE 174 (409)
Q Consensus 96 ~GLl~l~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~ 174 (409)
.+.+.+.. .+..+.|+|+.|++....-... .... ++.+++..+ + ++... . ....
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~----------~~~~-~~~~s~dg~-~-l~~~~-~-----------~~~~ 63 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQITLG----------YDFV-DTAITSDCS-N-VVVTS-D-----------FCQT 63 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEEEECC----------CCEE-EEEECSSSC-E-EEEEE-S-----------TTCE
T ss_pred CCEEEEEecCCCeEEEEeCcccceeeeEEcc----------CCcc-eEEEcCCCC-E-EEEEe-C-----------CCCe
Confidence 34444433 3567999999998875432211 1122 667766543 2 22221 1 1226
Q ss_pred EEEEEcCCCce--EEccccCcccccceeeeeeeeeccc-ceEEECCe-EEEEeecCCCCCCccEEEEEECCCcceee-ec
Q 040444 175 VKVFSLKNRSW--TRVKKLPNYLRFMFQFYFHLLHRRG-YGVYVNGV-VHWVSPRRPEFGIGNLIVAFDLGLEEFRL-LP 249 (409)
Q Consensus 175 ~~vyss~t~~W--r~~~~~p~~~~~~~~~~~~~~~~~~-~~v~~~G~-lywl~~~~~~~~~~~~Il~fDl~~e~~~~-i~ 249 (409)
+.+++..++.- +.+.... .... -.+.-+|. +| ...... ....|..+|+.+.+... ++
T Consensus 64 i~~~d~~~~~~~~~~~~~~~--------------~~~~~~~~s~dg~~l~-~~~~~~---~~~~i~v~d~~~~~~~~~~~ 125 (331)
T 3u4y_A 64 LVQIETQLEPPKVVAIQEGQ--------------SSMADVDITPDDQFAV-TVTGLN---HPFNMQSYSFLKNKFISTIP 125 (331)
T ss_dssp EEEEECSSSSCEEEEEEECS--------------SCCCCEEECTTSSEEE-ECCCSS---SSCEEEEEETTTTEEEEEEE
T ss_pred EEEEECCCCceeEEecccCC--------------CCccceEECCCCCEEE-EecCCC---CcccEEEEECCCCCeEEEEE
Confidence 77888877653 1121100 0001 11223454 44 332221 11259999998766533 33
Q ss_pred CCCCCCCCCCceEEEEEe-CCe-EEEEEecCCCeEEEEEEeecCCCCceeE-EEEeecccccCCcceeeeEEEEeecCCC
Q 040444 250 QPNYGAREKDFVLDVGAL-EGH-MCLMCNYDLVKVDVWMMKEYGLKESWSK-MFSIDRCRSISSFRFLRPLICSNEDGGD 326 (409)
Q Consensus 250 lP~~~~~~~~~~~~L~~~-~G~-L~~~~~~~~~~~~IW~l~~~~~~~~W~~-~~~I~~~~~~~~~~~~~p~~~~~~~~~~ 326 (409)
... .. ..+... +|+ |++........+.+|.++..+ ..... ...+.. .....-+.+.+ +|.
T Consensus 126 ~~~------~~-~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g--~~~~~~~~~~~~------~~~~~~~~~sp--dg~ 188 (331)
T 3u4y_A 126 IPY------DA-VGIAISPNGNGLILIDRSSANTVRRFKIDADG--VLFDTGQEFISG------GTRPFNITFTP--DGN 188 (331)
T ss_dssp CCT------TE-EEEEECTTSSCEEEEEETTTTEEEEEEECTTC--CEEEEEEEEECS------SSSEEEEEECT--TSS
T ss_pred CCC------Cc-cceEECCCCCEEEEEecCCCceEEEEEECCCC--cEeecCCccccC------CCCccceEECC--CCC
Confidence 322 11 123333 565 655555434239999998543 11111 112211 11134466777 777
Q ss_pred EEEEEEc-CcEEEEEECCCCcE
Q 040444 327 KVLLEVN-GEKLVWYDWKRKKL 347 (409)
Q Consensus 327 ~ill~~~-~~~l~~yd~~~~~~ 347 (409)
.+++... +..+..||+++++.
T Consensus 189 ~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 189 FAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp EEEEEETTTTEEEEEECSSTTS
T ss_pred EEEEEeCCCCeEEEEECCCCcc
Confidence 7777653 56799999998774
No 72
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=70.37 E-value=57 Score=28.76 Aligned_cols=58 Identities=7% Similarity=0.145 Sum_probs=34.8
Q ss_pred cCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCC----CEEEEEEcCcEEEEEECCC
Q 040444 277 YDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGG----DKVLLEVNGEKLVWYDWKR 344 (409)
Q Consensus 277 ~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~----~~ill~~~~~~l~~yd~~~ 344 (409)
..+..+.||-++. ...|.....+.-. .....-+++.+ ++ ..|+-...++.+..||+++
T Consensus 186 s~D~~v~lWd~~~---~~~~~~~~~l~~h-----~~~V~~v~~sp--~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 186 GCDNLIKLWKEEE---DGQWKEEQKLEAH-----SDWVRDVAWAP--SIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp BTTSBCCEEEECT---TSCEEEEECCBCC-----SSCEEEEECCC--CSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cCCCeEEEEEeCC---CCccceeeecccC-----CCceEEEEecC--CCCCCCceEEEEcCCCeEEEEEccC
Confidence 3345899998853 2457655544321 12344566666 43 4555556677899999876
No 73
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=69.73 E-value=72 Score=29.73 Aligned_cols=122 Identities=12% Similarity=0.128 Sum_probs=70.4
Q ss_pred CCeEEEEeecCCCCCCccEEEEEECCCcceeee---cC--C----CCCCCCCCce-EEEEEeCCeEEEEEecC------C
Q 040444 216 NGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLL---PQ--P----NYGAREKDFV-LDVGALEGHMCLMCNYD------L 279 (409)
Q Consensus 216 ~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i---~l--P----~~~~~~~~~~-~~L~~~~G~L~~~~~~~------~ 279 (409)
+|.++|.+... .+..+|+.++.-..+ .+ + . +....+.. +.+-.-+++|+++.... .
T Consensus 237 dG~~~~vs~~g-------~V~v~d~~~~~~~v~~~~~~~~~~~~~~-g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~ 308 (386)
T 3sjl_D 237 AGRLVWPTYTG-------KIHQIDLSSGDAKFLPAVEALTEAERAD-GWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKT 308 (386)
T ss_dssp TTEEEEEBTTS-------EEEEEECTTSSCEECCCEESSCHHHHHT-TEEECSSSCEEEETTTTEEEEEEEECCTTCTTS
T ss_pred CCcEEEEeCCC-------EEEEEECCCCcceeecceeccccccccc-cccCCCcceeeECCCCCeEEEEeccccccccCC
Confidence 78888876643 499999987753322 10 0 0 00000111 12222356777765421 1
Q ss_pred CeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCC-EEEEEEc-CcEEEEEECCCCcE-EEEEEeCCC
Q 040444 280 VKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGD-KVLLEVN-GEKLVWYDWKRKKL-KTVKIDGGP 356 (409)
Q Consensus 280 ~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~-~ill~~~-~~~l~~yd~~~~~~-~~v~~~~~~ 356 (409)
..=+||+++- ..+..+.+|++.. ...-+.+.+ ++. .+|.... ++.+..||..++++ +.+...+.+
T Consensus 309 ~~~~V~viD~----~t~kv~~~i~vg~------~~~~lavs~--D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p 376 (386)
T 3sjl_D 309 ASRFVVVLDA----KTGERLAKFEMGH------EIDSINVSQ--DEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHG 376 (386)
T ss_dssp CEEEEEEEET----TTCCEEEEEEEEE------EECEEEECS--SSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSS
T ss_pred CCCEEEEEEC----CCCeEEEEEECCC------CcceEEECC--CCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCC
Confidence 2578999985 4567777777642 123467777 765 5555333 56799999999885 445555544
Q ss_pred C
Q 040444 357 D 357 (409)
Q Consensus 357 ~ 357 (409)
.
T Consensus 377 ~ 377 (386)
T 3sjl_D 377 P 377 (386)
T ss_dssp C
T ss_pred c
Confidence 3
No 74
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=69.62 E-value=61 Score=28.86 Aligned_cols=93 Identities=6% Similarity=0.086 Sum_probs=53.1
Q ss_pred EEEEECCCcceee-ecCCCCCCCCCCceEEEEEe-CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcc
Q 040444 235 IVAFDLGLEEFRL-LPQPNYGAREKDFVLDVGAL-EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFR 312 (409)
Q Consensus 235 Il~fDl~~e~~~~-i~lP~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~ 312 (409)
|..+|+.+.+... +.... ... ..+... +|.+.+.... ...+.||-+... .....+... ..
T Consensus 166 i~~wd~~~~~~~~~~~~h~-----~~v-~~~~~~~~~~~l~sg~~-d~~v~~wd~~~~------~~~~~~~~h-----~~ 227 (340)
T 1got_B 166 CALWDIETGQQTTTFTGHT-----GDV-MSLSLAPDTRLFVSGAC-DASAKLWDVREG------MCRQTFTGH-----ES 227 (340)
T ss_dssp EEEEETTTTEEEEEECCCS-----SCE-EEEEECTTSSEEEEEET-TSCEEEEETTTC------SEEEEECCC-----SS
T ss_pred EEEEECCCCcEEEEEcCCC-----Cce-EEEEECCCCCEEEEEeC-CCcEEEEECCCC------eeEEEEcCC-----cC
Confidence 8889998765432 22111 111 123322 5665555544 349999977641 222323211 12
Q ss_pred eeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcE
Q 040444 313 FLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKL 347 (409)
Q Consensus 313 ~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~ 347 (409)
...-+++.+ ++..++....++.+..||+++++.
T Consensus 228 ~v~~v~~~p--~~~~l~s~s~d~~v~iwd~~~~~~ 260 (340)
T 1got_B 228 DINAICFFP--NGNAFATGSDDATCRLFDLRADQE 260 (340)
T ss_dssp CEEEEEECT--TSSEEEEEETTSCEEEEETTTTEE
T ss_pred CEEEEEEcC--CCCEEEEEcCCCcEEEEECCCCcE
Confidence 244567777 777777777777899999988764
No 75
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=68.67 E-value=1.1e+02 Score=31.51 Aligned_cols=132 Identities=11% Similarity=0.010 Sum_probs=68.5
Q ss_pred CCeEEEEeecCCCCCCccEEEEEECCCcceeeecCCCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEEEeecCCCCc
Q 040444 216 NGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLKES 295 (409)
Q Consensus 216 ~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~ 295 (409)
+|.|||...... ..|..+++....-..+-. . .. .....+.|-..+|+|+++.... -.||+.+-.|. ..
T Consensus 525 ~g~LYwtD~g~~-----~~I~~~~~dG~~~~~lv~-~-~l-~~P~GLavD~~~~~LYwaD~~~---~~I~~~d~dG~-~~ 592 (791)
T 3m0c_C 525 HGFMYWTDWGTP-----AKIKKGGLNGVDIYSLVT-E-NI-QWPNGITLDLLSGRLYWVDSKL---HSISSIDVNGG-NR 592 (791)
T ss_dssp TTEEEEEECSSS-----CEEEEEETTSCCEEEEEC-S-SC-SCEEEEEEETTTTEEEEEETTT---TEEEEEETTSC-SC
T ss_pred CCCEEEecCCCC-----CeEEEEecCCCceEEEEe-C-CC-CCceEEEEecCCCeEEEEeCCC---CcEEEEecCCC-ce
Confidence 589999864331 359999998655443321 1 11 1111222222478998886442 35677764442 22
Q ss_pred eeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEc-CcEEEEEECCCCcEEEEEEeCCCCceeEeEEEeccc
Q 040444 296 WSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVN-GEKLVWYDWKRKKLKTVKIDGGPDSFVACICVESLI 369 (409)
Q Consensus 296 W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~-~~~l~~yd~~~~~~~~v~~~~~~~~~~~~~y~eSlv 369 (409)
.+. +... .....|+++.. .++.||+... ...|..+|..+++-..+-..+...-+...+|.+..-
T Consensus 593 ~~v---~~~~-----~~l~~P~glav--~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~~l~~P~~i~v~h~~~Q 657 (791)
T 3m0c_C 593 KTI---LEDE-----KRLAHPFSLAV--FEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQ 657 (791)
T ss_dssp EEE---EECT-----TTTSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGGGS
T ss_pred EEE---ecCC-----CccCCCCEEEE--eCCEEEEEECCCCEEEEEeCCCCcceEEeecCCCCceeEeeeccccC
Confidence 222 1111 11235777765 4567777654 356889997766543322333322234455555443
No 76
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=68.30 E-value=76 Score=29.43 Aligned_cols=187 Identities=9% Similarity=0.007 Sum_probs=95.3
Q ss_pred ccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEEEEEcCCCce
Q 040444 106 QDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRSW 185 (409)
Q Consensus 106 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~vyss~t~~W 185 (409)
..+.+||..+++.+.|.... .....+.+.|... + ++..... .....+.+++..++..
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~-----------~~v~~~~~Spdg~-~-la~~s~~----------~~~~~i~~~d~~tg~~ 215 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSP-----------QPLMSPAWSPDGS-K-LAYVTFE----------SGRSALVIQTLANGAV 215 (415)
T ss_dssp EEEEEEETTSCSCEEEEEES-----------SCEEEEEECTTSS-E-EEEEECT----------TSSCEEEEEETTTCCE
T ss_pred ceEEEEcCCCCCCEEEeCCC-----------CcceeeEEcCCCC-E-EEEEEec----------CCCcEEEEEECCCCcE
Confidence 68999998876666554321 1234455655432 2 3322211 1235788999988877
Q ss_pred EEccccCcccccceeeeeeeeecccceEEECCe-EEEEeecCCCCCCccEEEEEECCCcceeeecCCCCCCCCCCceEEE
Q 040444 186 TRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGV-VHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDFVLDV 264 (409)
Q Consensus 186 r~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~~L 264 (409)
+.+...+. .. ......-+|. +.+....+. ...|..+|+.+.+...+.... . ....+
T Consensus 216 ~~l~~~~~----------~~---~~~~~spdg~~la~~~~~~g----~~~i~~~d~~~~~~~~l~~~~-~-----~~~~~ 272 (415)
T 2hqs_A 216 RQVASFPR----------HN---GAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDGR-S-----NNTEP 272 (415)
T ss_dssp EEEECCSS----------CE---EEEEECTTSSEEEEEECTTS----SCEEEEEETTTCCEEECCCCS-S-----CEEEE
T ss_pred EEeecCCC----------cc---cCEEEcCCCCEEEEEEecCC----CceEEEEECCCCCEEeCcCCC-C-----cccce
Confidence 66543331 00 0111112454 444433221 235899999887765433221 1 11122
Q ss_pred EE-eCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcC---cEEEEE
Q 040444 265 GA-LEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNG---EKLVWY 340 (409)
Q Consensus 265 ~~-~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~---~~l~~y 340 (409)
.- -+|+..++.........||.++-.+. . ...+... .....-+.+.+ +|..|++...+ ..++.|
T Consensus 273 ~~spdg~~l~~~s~~~g~~~i~~~d~~~~-~----~~~l~~~-----~~~~~~~~~sp--dG~~l~~~~~~~g~~~i~~~ 340 (415)
T 2hqs_A 273 TWFPDSQNLAFTSDQAGRPQVYKVNINGG-A----PQRITWE-----GSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQ 340 (415)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTSS-C----CEECCCS-----SSEEEEEEECT--TSSEEEEEEECSSCEEEEEE
T ss_pred EECCCCCEEEEEECCCCCcEEEEEECCCC-C----EEEEecC-----CCcccCeEECC--CCCEEEEEECcCCceEEEEE
Confidence 22 25664343333333567787774331 1 1112111 11233456667 77877766432 469999
Q ss_pred ECCCCcEEEE
Q 040444 341 DWKRKKLKTV 350 (409)
Q Consensus 341 d~~~~~~~~v 350 (409)
|+++++.+.+
T Consensus 341 d~~~~~~~~l 350 (415)
T 2hqs_A 341 DLATGGVQVL 350 (415)
T ss_dssp ETTTCCEEEC
T ss_pred ECCCCCEEEe
Confidence 9999987654
No 77
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=68.20 E-value=61 Score=28.30 Aligned_cols=109 Identities=14% Similarity=0.104 Sum_probs=57.6
Q ss_pred EEEEEECCC-ccee-----eecCCCCCCCCCCceEEEEE-eCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeeccc
Q 040444 234 LIVAFDLGL-EEFR-----LLPQPNYGAREKDFVLDVGA-LEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCR 306 (409)
Q Consensus 234 ~Il~fDl~~-e~~~-----~i~lP~~~~~~~~~~~~L~~-~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~ 306 (409)
.|..+|+.+ .+.. .+..+. +. ... .+.. -+|...++.......+.+|.++... ..+.....+....
T Consensus 152 ~v~~~d~~~~~~~~~~~~~~~~~~~-~~---~~~-~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~--g~~~~~~~~~~~~ 224 (343)
T 1ri6_A 152 RICLFTVSDDGHLVAQDPAEVTTVE-GA---GPR-HMVFHPNEQYAYCVNELNSSVDVWELKDPH--GNIECVQTLDMMP 224 (343)
T ss_dssp EEEEEEECTTSCEEEEEEEEEECST-TC---CEE-EEEECTTSSEEEEEETTTTEEEEEESSCTT--SCCEEEEEEECSC
T ss_pred EEEEEEecCCCceeeecccccccCC-CC---Ccc-eEEECCCCCEEEEEeCCCCEEEEEEecCCC--CcEEEEeeccccC
Confidence 489999987 5554 233333 11 111 2222 2565333444334589999987422 3354444443211
Q ss_pred c-cCCcceeeeEEEEeecCCCEEEEEE-cCcEEEEEECC--CCcEEEEE
Q 040444 307 S-ISSFRFLRPLICSNEDGGDKVLLEV-NGEKLVWYDWK--RKKLKTVK 351 (409)
Q Consensus 307 ~-~~~~~~~~p~~~~~~~~~~~ill~~-~~~~l~~yd~~--~~~~~~v~ 351 (409)
. ........-+.+.+ +|..+++.. .+..+..||++ +++.+.+.
T Consensus 225 ~~~~~~~~~~~i~~s~--dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~ 271 (343)
T 1ri6_A 225 ENFSDTRWAADIHITP--DGRHLYACDRTASLITVFSVSEDGSVLSKEG 271 (343)
T ss_dssp TTCCSCCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTSCCEEEEE
T ss_pred ccccccCCccceEECC--CCCEEEEEecCCCEEEEEEEcCCCCceEEee
Confidence 1 01111223366766 777777665 35679999998 56666553
No 78
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=68.03 E-value=60 Score=28.12 Aligned_cols=145 Identities=13% Similarity=0.101 Sum_probs=83.0
Q ss_pred ecEEEEEEcCCCceEEccccCcccccceeeeeeeeecccce-EEECCeEEEEeecCCCCCCccEEEEEECCCcc-eeeec
Q 040444 172 EYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYG-VYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEE-FRLLP 249 (409)
Q Consensus 172 ~~~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~-v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~-~~~i~ 249 (409)
...+.+++..++.=.....++. . ....+ ...++.+|-+..... .+..||..+-+ -..++
T Consensus 42 ~S~v~~vD~~tgkv~~~~~l~~----------~---~fgeGi~~~~~~ly~ltw~~~------~v~v~D~~tl~~~~ti~ 102 (243)
T 3mbr_X 42 RSSVRKVDLETGRILQRAEVPP----------P---YFGAGIVAWRDRLIQLTWRNH------EGFVYDLATLTPRARFR 102 (243)
T ss_dssp SCEEEEEETTTCCEEEEEECCT----------T---CCEEEEEEETTEEEEEESSSS------EEEEEETTTTEEEEEEE
T ss_pred CceEEEEECCCCCEEEEEeCCC----------C---cceeEEEEeCCEEEEEEeeCC------EEEEEECCcCcEEEEEe
Confidence 4578899999876433223331 0 11222 356789999876654 59999998754 45577
Q ss_pred CCCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEE
Q 040444 250 QPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVL 329 (409)
Q Consensus 250 lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~il 329 (409)
.|. .++ .|..-+++|++... .. .|++++-. .=..+.+|.............-+.+. ++.|+
T Consensus 103 ~~~-----~Gw--glt~dg~~L~vSdg--s~--~l~~iDp~----t~~~~~~I~V~~~g~~~~~lNeLe~~----~G~ly 163 (243)
T 3mbr_X 103 YPG-----EGW--ALTSDDSHLYMSDG--TA--VIRKLDPD----TLQQVGSIKVTAGGRPLDNLNELEWV----NGELL 163 (243)
T ss_dssp CSS-----CCC--EEEECSSCEEEECS--SS--EEEEECTT----TCCEEEEEECEETTEECCCEEEEEEE----TTEEE
T ss_pred CCC-----Cce--EEeeCCCEEEEECC--CC--eEEEEeCC----CCeEEEEEEEccCCcccccceeeEEe----CCEEE
Confidence 665 122 45556777777653 22 36777632 12345555553211111111112222 36788
Q ss_pred EEEc-CcEEEEEECCCCcEE-EEEEeC
Q 040444 330 LEVN-GEKLVWYDWKRKKLK-TVKIDG 354 (409)
Q Consensus 330 l~~~-~~~l~~yd~~~~~~~-~v~~~~ 354 (409)
.+.. ...+...|++++++. .+.+.+
T Consensus 164 anvw~s~~I~vIDp~tG~V~~~idl~~ 190 (243)
T 3mbr_X 164 ANVWLTSRIARIDPASGKVVAWIDLQA 190 (243)
T ss_dssp EEETTTTEEEEECTTTCBEEEEEECGG
T ss_pred EEECCCCeEEEEECCCCCEEEEEECCc
Confidence 8774 567999999999974 456543
No 79
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=66.92 E-value=72 Score=28.64 Aligned_cols=32 Identities=0% Similarity=-0.147 Sum_probs=20.9
Q ss_pred eeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcE
Q 040444 314 LRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKL 347 (409)
Q Consensus 314 ~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~ 347 (409)
..-+.+.+ ++..|+....++.+..||+++.+.
T Consensus 337 v~~~~~s~--~~~~l~s~~~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 337 VDCCVFQS--NFQELYSGSRDCNILAWVPSLYEP 368 (408)
T ss_dssp EEEEEEET--TTTEEEEEETTSCEEEEEECC---
T ss_pred EEEEEEcC--CCCEEEEECCCCeEEEEeCCCCCc
Confidence 34466666 777666666677799999988764
No 80
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=66.46 E-value=83 Score=29.17 Aligned_cols=186 Identities=6% Similarity=-0.048 Sum_probs=92.6
Q ss_pred ccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEEEEEcCCCce
Q 040444 106 QDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRSW 185 (409)
Q Consensus 106 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~vyss~t~~W 185 (409)
..++++|..|++...+...+ .....+.+.|.. .+ ++..... .....+.+++..++..
T Consensus 203 ~~i~~~d~~tg~~~~l~~~~-----------~~~~~~~~spdg-~~-la~~~~~----------~g~~~i~~~d~~~~~~ 259 (415)
T 2hqs_A 203 SALVIQTLANGAVRQVASFP-----------RHNGAPAFSPDG-SK-LAFALSK----------TGSLNLYVMDLASGQI 259 (415)
T ss_dssp CEEEEEETTTCCEEEEECCS-----------SCEEEEEECTTS-SE-EEEEECT----------TSSCEEEEEETTTCCE
T ss_pred cEEEEEECCCCcEEEeecCC-----------CcccCEEEcCCC-CE-EEEEEec----------CCCceEEEEECCCCCE
Confidence 48999999999887664322 123455566543 22 2222111 1234677889888776
Q ss_pred EEccccCcccccceeeeeeeeecccceEEECCe-EEEEeecCCCCCCccEEEEEECCCcceeeecCCCCCCCCCCceEEE
Q 040444 186 TRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGV-VHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDFVLDV 264 (409)
Q Consensus 186 r~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~~L 264 (409)
+.+...+. .. ......-+|. ++....... ...|..+|+.+.+...+.... .....+
T Consensus 260 ~~l~~~~~----------~~---~~~~~spdg~~l~~~s~~~g----~~~i~~~d~~~~~~~~l~~~~------~~~~~~ 316 (415)
T 2hqs_A 260 RQVTDGRS----------NN---TEPTWFPDSQNLAFTSDQAG----RPQVYKVNINGGAPQRITWEG------SQNQDA 316 (415)
T ss_dssp EECCCCSS----------CE---EEEEECTTSSEEEEEECTTS----SCEEEEEETTSSCCEECCCSS------SEEEEE
T ss_pred EeCcCCCC----------cc---cceEECCCCCEEEEEECCCC----CcEEEEEECCCCCEEEEecCC------CcccCe
Confidence 66543321 00 0001112454 443332221 235888999887655433222 111122
Q ss_pred EE-eCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCc---EEEEE
Q 040444 265 GA-LEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGE---KLVWY 340 (409)
Q Consensus 265 ~~-~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~---~l~~y 340 (409)
.- -+|+..++.........||+++-.+ .... .+... . ....+.+.+ +|..|++...+. .|+.+
T Consensus 317 ~~spdG~~l~~~~~~~g~~~i~~~d~~~--~~~~---~l~~~-----~-~~~~~~~sp--dg~~l~~~s~~~~~~~l~~~ 383 (415)
T 2hqs_A 317 DVSSDGKFMVMVSSNGGQQHIAKQDLAT--GGVQ---VLSST-----F-LDETPSLAP--NGTMVIYSSSQGMGSVLNLV 383 (415)
T ss_dssp EECTTSSEEEEEEECSSCEEEEEEETTT--CCEE---ECCCS-----S-SCEEEEECT--TSSEEEEEEEETTEEEEEEE
T ss_pred EECCCCCEEEEEECcCCceEEEEEECCC--CCEE---EecCC-----C-CcCCeEEcC--CCCEEEEEEcCCCccEEEEE
Confidence 22 2555433333322234444444222 1121 22211 1 233457777 878777665433 69999
Q ss_pred ECCCCcEEEE
Q 040444 341 DWKRKKLKTV 350 (409)
Q Consensus 341 d~~~~~~~~v 350 (409)
|+.++..+.+
T Consensus 384 d~~g~~~~~l 393 (415)
T 2hqs_A 384 STDGRFKARL 393 (415)
T ss_dssp ETTSCCEEEC
T ss_pred ECCCCcEEEe
Confidence 9998887765
No 81
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=65.74 E-value=75 Score=28.38 Aligned_cols=103 Identities=15% Similarity=0.111 Sum_probs=59.0
Q ss_pred EEEEEECCCcceeeec----CCCCCCCCCCceEEEEEe-CCeEEEEEecC-CCeEEEEEEeecCCCCceeEEEEeecccc
Q 040444 234 LIVAFDLGLEEFRLLP----QPNYGAREKDFVLDVGAL-EGHMCLMCNYD-LVKVDVWMMKEYGLKESWSKMFSIDRCRS 307 (409)
Q Consensus 234 ~Il~fDl~~e~~~~i~----lP~~~~~~~~~~~~L~~~-~G~L~~~~~~~-~~~~~IW~l~~~~~~~~W~~~~~I~~~~~ 307 (409)
.|..||+.+.++..+. .|. .. ... ..+... +|+..++.... ...+.||.++.. ...+.....+....
T Consensus 234 ~v~v~~~~~g~~~~~~~~~~~~~-~~--~~~-~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~--~g~~~~~~~~~~g~- 306 (361)
T 3scy_A 234 TVIAFRYADGMLDEIQTVAADTV-NA--QGS-GDIHLSPDGKYLYASNRLKADGVAIFKVDET--NGTLTKVGYQLTGI- 306 (361)
T ss_dssp EEEEEEEETTEEEEEEEEESCSS-CC--CCE-EEEEECTTSSEEEEEECSSSCEEEEEEECTT--TCCEEEEEEEECSS-
T ss_pred eEEEEEecCCceEEeEEEecCCC-CC--CCc-ccEEECCCCCEEEEECCCCCCEEEEEEEcCC--CCcEEEeeEecCCC-
Confidence 4888898776654432 222 11 111 133333 67654455444 458999999732 23466666555411
Q ss_pred cCCcceeeeEEEEeecCCCEEEEEE-cCcEEEE--EECCCCcEEEE
Q 040444 308 ISSFRFLRPLICSNEDGGDKVLLEV-NGEKLVW--YDWKRKKLKTV 350 (409)
Q Consensus 308 ~~~~~~~~p~~~~~~~~~~~ill~~-~~~~l~~--yd~~~~~~~~v 350 (409)
...-+++.+ +|..|++.. .+..+.. +|+++++++.+
T Consensus 307 -----~~~~~~~sp--dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 307 -----HPRNFIITP--NGKYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp -----CCCEEEECT--TSCEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred -----CCceEEECC--CCCEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 123467777 777777765 3344544 68889988775
No 82
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=65.32 E-value=81 Score=28.68 Aligned_cols=104 Identities=12% Similarity=0.090 Sum_probs=56.2
Q ss_pred EEEEEECCCcceee-ecCCCCCCCCCCceEEEEEeCCeEEEEEe--cCCCeEEEEEEeecCCCCceeEEEEeecccccCC
Q 040444 234 LIVAFDLGLEEFRL-LPQPNYGAREKDFVLDVGALEGHMCLMCN--YDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISS 310 (409)
Q Consensus 234 ~Il~fDl~~e~~~~-i~lP~~~~~~~~~~~~L~~~~G~L~~~~~--~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~ 310 (409)
.|..+|+.+.+... +.... .. ..... ....-+|.+.++.. .....+.||-+.... . =.....++..
T Consensus 199 ~i~iwd~~~~~~~~~~~~~~-~~-~~~~~-~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~--~-~~~~~~~~~~----- 267 (402)
T 2aq5_A 199 RVRVIEPRKGTVVAEKDRPH-EG-TRPVH-AVFVSEGKILTTGFSRMSERQVALWDTKHLE--E-PLSLQELDTS----- 267 (402)
T ss_dssp EEEEEETTTTEEEEEEECSS-CS-SSCCE-EEECSTTEEEEEEECTTCCEEEEEEETTBCS--S-CSEEEECCCC-----
T ss_pred cEEEEeCCCCceeeeeccCC-CC-CcceE-EEEcCCCcEEEEeccCCCCceEEEEcCcccc--C-CceEEeccCC-----
Confidence 58999998765433 21221 11 10111 12223677655553 234489999887532 1 1122222211
Q ss_pred cceeeeEEEEeecCCCEEEEEE-cCcEEEEEECCCCc--EEEEE
Q 040444 311 FRFLRPLICSNEDGGDKVLLEV-NGEKLVWYDWKRKK--LKTVK 351 (409)
Q Consensus 311 ~~~~~p~~~~~~~~~~~ill~~-~~~~l~~yd~~~~~--~~~v~ 351 (409)
....-+.+.+ ++..+++.. .++.+..||+++++ +..+.
T Consensus 268 -~~v~~~~~s~--~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~ 308 (402)
T 2aq5_A 268 -SGVLLPFFDP--DTNIVYLCGKGDSSIRYFEITSEAPFLHYLS 308 (402)
T ss_dssp -SSCEEEEEET--TTTEEEEEETTCSCEEEEEECSSTTCEEEEE
T ss_pred -CceeEEEEcC--CCCEEEEEEcCCCeEEEEEecCCCcceEeec
Confidence 1133456677 777776665 36679999999887 65553
No 83
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=63.24 E-value=79 Score=27.80 Aligned_cols=33 Identities=3% Similarity=0.018 Sum_probs=23.9
Q ss_pred eeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcEE
Q 040444 314 LRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKLK 348 (409)
Q Consensus 314 ~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~~ 348 (409)
..-+.+.+ ++..++....++.+..||+++++..
T Consensus 276 v~~~~~sp--~~~~l~s~~~dg~i~iwd~~~~~~~ 308 (368)
T 3mmy_A 276 VNGIAFHP--VHGTLATVGSDGRFSFWDKDARTKL 308 (368)
T ss_dssp EEEEEECT--TTCCEEEEETTSCEEEEETTTTEEE
T ss_pred eEEEEEec--CCCEEEEEccCCeEEEEECCCCcEE
Confidence 34456666 7677776666778999999987653
No 84
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=63.12 E-value=80 Score=34.03 Aligned_cols=94 Identities=5% Similarity=0.035 Sum_probs=50.9
Q ss_pred EEEEEECCCcceee-ecCCCCCCCCCCceEEEE-EeCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCc
Q 040444 234 LIVAFDLGLEEFRL-LPQPNYGAREKDFVLDVG-ALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSF 311 (409)
Q Consensus 234 ~Il~fDl~~e~~~~-i~lP~~~~~~~~~~~~L~-~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~ 311 (409)
.|..+|+.+.+... +....... . .+. .-+|.+.++... ...+.||-++... . ...+. +..
T Consensus 1066 ~v~vwd~~~~~~~~~~~~~~~~v----~--~~~~s~d~~~l~s~s~-d~~v~iwd~~~~~--~----~~~l~-----~h~ 1127 (1249)
T 3sfz_A 1066 TVKVWNVITGRIERDFTCHQGTV----L--SCAISSDATKFSSTSA-DKTAKIWSFDLLS--P----LHELK-----GHN 1127 (1249)
T ss_dssp EEEEEETTTTCCCEEEECCSSCC----C--CEEECSSSSSCEEECC-SSCCCEECSSSSS--C----SBCCC-----CCS
T ss_pred cEEEEECCCCceeEEEcccCCcE----E--EEEECCCCCEEEEEcC-CCcEEEEECCCcc--e----eeeec-----cCC
Confidence 48889987765432 22222011 1 122 225554444433 3489999876422 1 11111 111
Q ss_pred ceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcE
Q 040444 312 RFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKL 347 (409)
Q Consensus 312 ~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~ 347 (409)
....-+++.+ +|..++....++.+..||+.+++.
T Consensus 1128 ~~v~~~~~s~--dg~~lat~~~dg~i~vwd~~~~~~ 1161 (1249)
T 3sfz_A 1128 GCVRCSAFSL--DGILLATGDDNGEIRIWNVSDGQL 1161 (1249)
T ss_dssp SCEEEEEECS--SSSEEEEEETTSCCCEEESSSSCC
T ss_pred CcEEEEEECC--CCCEEEEEeCCCEEEEEECCCCce
Confidence 2244567777 777777777777799999988764
No 85
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=62.98 E-value=79 Score=27.73 Aligned_cols=72 Identities=7% Similarity=-0.033 Sum_probs=40.5
Q ss_pred CCeEEEEEecCCCeEEEEEEeecCCC-------------CceeEEEEeecccccCCcceeeeEEEEeecCCCEEEE-EEc
Q 040444 268 EGHMCLMCNYDLVKVDVWMMKEYGLK-------------ESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLL-EVN 333 (409)
Q Consensus 268 ~G~L~~~~~~~~~~~~IW~l~~~~~~-------------~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill-~~~ 333 (409)
+|.-.++.......+.||-++..... ..+.....+... .....-+.+.+ ++..+++ ...
T Consensus 270 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~~v~~~~~s~--~~~~l~~s~~~ 342 (357)
T 3i2n_A 270 QNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS-----TQPISSLDWSP--DKRGLCVCSSF 342 (357)
T ss_dssp TEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC-----SSCEEEEEECS--SSTTEEEEEET
T ss_pred CCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccC-----CCCeeEEEEcC--CCCeEEEEecC
Confidence 45523444444459999999853211 134455544432 12244567777 7666663 556
Q ss_pred CcEEEEEECCCCc
Q 040444 334 GEKLVWYDWKRKK 346 (409)
Q Consensus 334 ~~~l~~yd~~~~~ 346 (409)
++.+..||+.+..
T Consensus 343 d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 343 DQTVRVLIVTKLN 355 (357)
T ss_dssp TSEEEEEEECC--
T ss_pred CCcEEEEECCCcc
Confidence 7789999987643
No 86
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=62.63 E-value=77 Score=27.48 Aligned_cols=87 Identities=9% Similarity=0.039 Sum_probs=47.7
Q ss_pred EEEEECCCcceeeecCCCCCCCCCCceEEEEEe-CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcce
Q 040444 235 IVAFDLGLEEFRLLPQPNYGAREKDFVLDVGAL-EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRF 313 (409)
Q Consensus 235 Il~fDl~~e~~~~i~lP~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~ 313 (409)
|..+|+.+.+...+.... ... ..+.-. +|.+.++... ...+.+|-++... ........ ..
T Consensus 248 i~~~~~~~~~~~~~~~~~-----~~v-~~~~~~~~~~~l~~~~~-dg~i~~~~~~~~~------~~~~~~~~------~~ 308 (337)
T 1gxr_A 248 VEVLHVNKPDKYQLHLHE-----SCV-LSLKFAYCGKWFVSTGK-DNLLNAWRTPYGA------SIFQSKES------SS 308 (337)
T ss_dssp EEEEETTSSCEEEECCCS-----SCE-EEEEECTTSSEEEEEET-TSEEEEEETTTCC------EEEEEECS------SC
T ss_pred EEEEECCCCCeEEEcCCc-----cce-eEEEECCCCCEEEEecC-CCcEEEEECCCCe------EEEEecCC------Cc
Confidence 888999877654332222 111 123323 5665554444 4489999877421 11222211 12
Q ss_pred eeeEEEEeecCCCEEEEEEcCcEEEEEEC
Q 040444 314 LRPLICSNEDGGDKVLLEVNGEKLVWYDW 342 (409)
Q Consensus 314 ~~p~~~~~~~~~~~ill~~~~~~l~~yd~ 342 (409)
..-+.+.+ ++..++....++.+..||+
T Consensus 309 v~~~~~s~--~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 309 VLSCDISV--DDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEEECT--TSCEEEEEETTSCEEEEEE
T ss_pred EEEEEECC--CCCEEEEecCCCeEEEEEE
Confidence 33456666 7777776776777888875
No 87
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=62.47 E-value=79 Score=27.54 Aligned_cols=204 Identities=12% Similarity=0.076 Sum_probs=95.1
Q ss_pred cccceEEEee-CCccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCccee
Q 040444 94 SCNGLLALSN-SDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVE 172 (409)
Q Consensus 94 sc~GLl~l~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~ 172 (409)
..+|-|...+ ....++.+||.|++...+..+. ...++.+++..+ -++. . .
T Consensus 22 ~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~------------~~~~i~~~~dG~--l~v~-~--------------~ 72 (297)
T 3g4e_A 22 EVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDA------------PVSSVALRQSGG--YVAT-I--------------G 72 (297)
T ss_dssp TTTTEEEEEETTTTEEEEEETTTCCEEEEECSS------------CEEEEEEBTTSS--EEEE-E--------------T
T ss_pred CCCCEEEEEECCCCEEEEEECCCCcEEEEeCCC------------ceEEEEECCCCC--EEEE-E--------------C
Confidence 3345554444 4568999999998776553211 134566776543 1222 1 1
Q ss_pred cEEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEE--ECCeEEEEeecCCCC-----CCccEEEEEECCCcce
Q 040444 173 YEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVY--VNGVVHWVSPRRPEF-----GIGNLIVAFDLGLEEF 245 (409)
Q Consensus 173 ~~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~--~~G~lywl~~~~~~~-----~~~~~Il~fDl~~e~~ 245 (409)
..+.+|+..++.++.+...+.... .. ....+. -+|.+|.-....... .....|..+|.... .
T Consensus 73 ~~l~~~d~~~g~~~~~~~~~~~~~------~~----~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~ 141 (297)
T 3g4e_A 73 TKFCALNWKEQSAVVLATVDNDKK------NN----RFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-V 141 (297)
T ss_dssp TEEEEEETTTTEEEEEEECCTTCS------SE----EEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-E
T ss_pred CeEEEEECCCCcEEEEEecCCCCC------CC----CCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC-E
Confidence 256788888888876643321100 00 111222 257865533221100 12246888887532 2
Q ss_pred eeecCCCCCCCCCCceEEEEEe-CCe-EEEEEecCCCeEEEEEEe-ecCCCCceeEEEE-eecccccCCcceeeeEEEEe
Q 040444 246 RLLPQPNYGAREKDFVLDVGAL-EGH-MCLMCNYDLVKVDVWMMK-EYGLKESWSKMFS-IDRCRSISSFRFLRPLICSN 321 (409)
Q Consensus 246 ~~i~lP~~~~~~~~~~~~L~~~-~G~-L~~~~~~~~~~~~IW~l~-~~~~~~~W~~~~~-I~~~~~~~~~~~~~p~~~~~ 321 (409)
..+. . .. ...-.+... +|+ |+++.... ..+.+|-++ +.| ....... ...... .....-+++.+
T Consensus 142 ~~~~--~-~~---~~pngi~~spdg~~lyv~~~~~-~~i~~~~~d~~~G---~~~~~~~~~~~~~~---~~~p~g~~~d~ 208 (297)
T 3g4e_A 142 KKYF--D-QV---DISNGLDWSLDHKIFYYIDSLS-YSVDAFDYDLQTG---QISNRRSVYKLEKE---EQIPDGMCIDA 208 (297)
T ss_dssp EEEE--E-EE---SBEEEEEECTTSCEEEEEEGGG-TEEEEEEECTTTC---CEEEEEEEEECCGG---GCEEEEEEEBT
T ss_pred EEEe--e-cc---ccccceEEcCCCCEEEEecCCC-CcEEEEeccCCCC---cccCcEEEEECCCC---CCCCCeeEECC
Confidence 2211 0 00 001123332 454 55554432 355555553 222 2222111 121110 01122244444
Q ss_pred ecCCCEEEEEE-cCcEEEEEECCCCcE-EEEEEe
Q 040444 322 EDGGDKVLLEV-NGEKLVWYDWKRKKL-KTVKID 353 (409)
Q Consensus 322 ~~~~~~ill~~-~~~~l~~yd~~~~~~-~~v~~~ 353 (409)
+| .|++.. ....|..||++++++ ..+..+
T Consensus 209 --~G-~lwva~~~~~~v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 209 --EG-KLWVACYNGGRVIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp --TS-CEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred --CC-CEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence 65 466654 456799999996664 556554
No 88
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=62.29 E-value=98 Score=28.59 Aligned_cols=99 Identities=14% Similarity=0.127 Sum_probs=48.4
Q ss_pred EEEEEECCCcce-eeecCCCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcc
Q 040444 234 LIVAFDLGLEEF-RLLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFR 312 (409)
Q Consensus 234 ~Il~fDl~~e~~-~~i~lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~ 312 (409)
.|..+|+.+.+. ..+..+. .. .. .+.-...+|.+.++... ...+.||-++.. .....+..........
T Consensus 340 ~i~vwd~~~~~~~~~~~~~~-~~--~~-~v~~~~~~~~~l~s~~~-dg~v~iwd~~~~------~~~~~~~~~~~~~~~~ 408 (445)
T 2ovr_B 340 TVKIWDIKTGQCLQTLQGPN-KH--QS-AVTCLQFNKNFVITSSD-DGTVKLWDLKTG------EFIRNLVTLESGGSGG 408 (445)
T ss_dssp CEEEEETTTCCEEEEECSTT-SC--SS-CEEEEEECSSEEEEEET-TSEEEEEETTTC------CEEEEEEECTTGGGTC
T ss_pred eEEEEECCCCcEEEEEccCC-CC--CC-CEEEEEECCCEEEEEeC-CCeEEEEECCCC------ceeeeeeccccCCCCc
Confidence 389999976543 4445443 11 11 12223345665555544 349999987641 2333332111111112
Q ss_pred eeeeEEEEeecCCCEEEEEEcCc----EEEEEECCCC
Q 040444 313 FLRPLICSNEDGGDKVLLEVNGE----KLVWYDWKRK 345 (409)
Q Consensus 313 ~~~p~~~~~~~~~~~ill~~~~~----~l~~yd~~~~ 345 (409)
...-+.+.+ ++..+.....++ ++..||.+..
T Consensus 409 ~v~~~~~s~--~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 409 VVWRIRASN--TKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEEEECS--SEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred eEEEEEecC--CEEEEEEcccCCCCccEEEEEECCCC
Confidence 334456655 543333333333 4888888754
No 89
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=60.70 E-value=94 Score=27.87 Aligned_cols=69 Identities=9% Similarity=0.150 Sum_probs=39.0
Q ss_pred EEEEecCCCeEEEEEEeecCCCCceeEEEEeeccc-ccCCcceeeeEEEEeecCCCEEEEEEcC---cEEEEEECCCCcE
Q 040444 272 CLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCR-SISSFRFLRPLICSNEDGGDKVLLEVNG---EKLVWYDWKRKKL 347 (409)
Q Consensus 272 ~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~-~~~~~~~~~p~~~~~~~~~~~ill~~~~---~~l~~yd~~~~~~ 347 (409)
.++.......+.||-+... .....+.... .........-+.+.+ ++..|+....+ +.+..||+++++.
T Consensus 199 ~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~h~~~~~~i~~i~~~~--~~~~l~~~~~d~~~g~i~i~d~~~~~~ 270 (397)
T 1sq9_A 199 LIATGFNNGTVQISELSTL------RPLYNFESQHSMINNSNSIRSVKFSP--QGSLLAIAHDSNSFGCITLYETEFGER 270 (397)
T ss_dssp EEEEECTTSEEEEEETTTT------EEEEEEECCC---CCCCCEEEEEECS--STTEEEEEEEETTEEEEEEEETTTCCE
T ss_pred eEEEEeCCCcEEEEECCCC------ceeEEEeccccccccCCccceEEECC--CCCEEEEEecCCCCceEEEEECCCCcc
Confidence 4444444558999987641 2333333200 000011234566766 77777766666 6799999988764
Q ss_pred E
Q 040444 348 K 348 (409)
Q Consensus 348 ~ 348 (409)
.
T Consensus 271 ~ 271 (397)
T 1sq9_A 271 I 271 (397)
T ss_dssp E
T ss_pred c
Confidence 3
No 90
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=59.54 E-value=92 Score=27.37 Aligned_cols=115 Identities=5% Similarity=-0.015 Sum_probs=66.7
Q ss_pred EECCeEEEEeecCCCCCCccEEEEEECCCcc-eeeecCCCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEEEeecCC
Q 040444 214 YVNGVVHWVSPRRPEFGIGNLIVAFDLGLEE-FRLLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGL 292 (409)
Q Consensus 214 ~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~-~~~i~lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~ 292 (409)
..++.+|-+...+. .+..||..+-+ -..|+.+. . ++ .|..-+++|++... .. .|++++-.
T Consensus 103 ~~g~~Ly~ltw~~~------~v~V~D~~Tl~~~~ti~~~~-e----Gw--GLt~Dg~~L~vSdG--s~--~l~~iDp~-- 163 (268)
T 3nok_A 103 SDGERLYQLTWTEG------LLFTWSGMPPQRERTTRYSG-E----GW--GLCYWNGKLVRSDG--GT--MLTFHEPD-- 163 (268)
T ss_dssp ECSSCEEEEESSSC------EEEEEETTTTEEEEEEECSS-C----CC--CEEEETTEEEEECS--SS--EEEEECTT--
T ss_pred EeCCEEEEEEccCC------EEEEEECCcCcEEEEEeCCC-c----ee--EEecCCCEEEEECC--CC--EEEEEcCC--
Confidence 44578888766543 59999998754 45577665 1 22 34555777777652 22 56666632
Q ss_pred CCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEc-CcEEEEEECCCCcEE-EEEEe
Q 040444 293 KESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVN-GEKLVWYDWKRKKLK-TVKID 353 (409)
Q Consensus 293 ~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~-~~~l~~yd~~~~~~~-~v~~~ 353 (409)
.=..+.+|.............-+.+. + +.|+.+.. ...|...|++++++. .|.+.
T Consensus 164 --T~~v~~~I~V~~~g~~v~~lNeLe~~---d-G~lyanvw~s~~I~vIDp~TG~V~~~Idl~ 220 (268)
T 3nok_A 164 --GFALVGAVQVKLRGQPVELINELECA---N-GVIYANIWHSSDVLEIDPATGTVVGVIDAS 220 (268)
T ss_dssp --TCCEEEEEECEETTEECCCEEEEEEE---T-TEEEEEETTCSEEEEECTTTCBEEEEEECH
T ss_pred --CCeEEEEEEeCCCCcccccccccEEe---C-CEEEEEECCCCeEEEEeCCCCcEEEEEECC
Confidence 12345556553221111111123332 4 57888764 467999999999974 46554
No 91
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=58.92 E-value=1.1e+02 Score=27.85 Aligned_cols=100 Identities=9% Similarity=0.033 Sum_probs=52.2
Q ss_pred EEEEEECCCcce--eeecCCCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecc-cccCC
Q 040444 234 LIVAFDLGLEEF--RLLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRC-RSISS 310 (409)
Q Consensus 234 ~Il~fDl~~e~~--~~i~lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~-~~~~~ 310 (409)
.|..+|+.+.+. ..+.... .... ..+...+|.+.+.. .....+.||.+.+.+. .... ..+... .....
T Consensus 314 ~i~vwd~~~~~~~~~~~~~~~----~~~v-~~~~~~~~~~l~s~-~~d~~v~iw~~~~~~~--~~~~-~~~~~~~~~~~~ 384 (420)
T 3vl1_A 314 MLAQWDLRSPECPVGEFLINE----GTPI-NNVYFAAGALFVSS-GFDTSIKLDIISDPES--ERPA-IEFETPTFLVSN 384 (420)
T ss_dssp EEEEEETTCTTSCSEEEEEST----TSCE-EEEEEETTEEEEEE-TTTEEEEEEEECCTTC--CSCE-ECTTSCEEECCS
T ss_pred eEEEEEcCCCcCchhhhhccC----CCCc-eEEEeCCCCEEEEe-cCCccEEEEeccCCCC--Cccc-eeccCccEEccC
Confidence 589999987542 3232211 1111 13344477654444 3345999999986321 1111 111100 00111
Q ss_pred cceeeeEEEEeecCCC---EEEEEEcCcEEEEEECCC
Q 040444 311 FRFLRPLICSNEDGGD---KVLLEVNGEKLVWYDWKR 344 (409)
Q Consensus 311 ~~~~~p~~~~~~~~~~---~ill~~~~~~l~~yd~~~ 344 (409)
.....-+++.+ ++. .++.....+.+..|+++.
T Consensus 385 ~~~v~~~~~s~--~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 385 DDAVSQFCYVS--DDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp SCCCCEEEEEC--CSSSSCEEEEEETTTEEEEEESCC
T ss_pred CcceEEEEEcc--CCCCcceEEEEcCCceEEEEeccC
Confidence 22344567777 555 677777777799999875
No 92
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=57.35 E-value=20 Score=26.94 Aligned_cols=41 Identities=17% Similarity=0.317 Sum_probs=29.7
Q ss_pred cEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEE
Q 040444 107 DIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMV 157 (409)
Q Consensus 107 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~ 157 (409)
.+++.+|.|+.| +|..... ......+..|...+.|+|+...
T Consensus 12 ~V~~~d~~~~~W--~p~~~~~--------g~s~V~~~~d~~~~~yrIv~~~ 52 (112)
T 1evh_A 12 AVMVYDDANKKW--VPAGGST--------GFSRVHIYHHTGNNTFRVVGRK 52 (112)
T ss_dssp EEEEEETTTTEE--EEGGGCC--------SCEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEcCCCCce--EECCCCC--------CceEEEEEEECCCCEEEEEEEE
Confidence 578899999966 5543210 3445778889888899999875
No 93
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=55.61 E-value=53 Score=28.67 Aligned_cols=99 Identities=11% Similarity=0.046 Sum_probs=55.2
Q ss_pred EEEEEECCCcceeeecCCCCCCCCCCceEEEEEe-CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcc
Q 040444 234 LIVAFDLGLEEFRLLPQPNYGAREKDFVLDVGAL-EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFR 312 (409)
Q Consensus 234 ~Il~fDl~~e~~~~i~lP~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~ 312 (409)
.|..+|+.+.+...+.+++... . ...+... +|+..++. ...+.+|-++. ......+....
T Consensus 220 ~v~~~d~~~~~~~~~~~~~~~~---~-~~~~~~s~dg~~l~~~---~~~v~~~d~~~------~~~~~~~~~~~------ 280 (337)
T 1pby_B 220 GLLTMDLETGEMAMREVRIMDV---F-YFSTAVNPAKTRAFGA---YNVLESFDLEK------NASIKRVPLPH------ 280 (337)
T ss_dssp EEEEEETTTCCEEEEEEEECSS---C-EEEEEECTTSSEEEEE---ESEEEEEETTT------TEEEEEEECSS------
T ss_pred ceEEEeCCCCCceEeecCCCCC---c-eeeEEECCCCCEEEEe---CCeEEEEECCC------CcCcceecCCC------
Confidence 4789999987766544443111 1 1122222 45443333 24777776542 23334444321
Q ss_pred eeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcE-EEEEEe
Q 040444 313 FLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKL-KTVKID 353 (409)
Q Consensus 313 ~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~-~~v~~~ 353 (409)
...-+.+.+ +|..+++...+..+..||+++++. ..+...
T Consensus 281 ~~~~~~~s~--dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 281 SYYSVNVST--DGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp CCCEEEECT--TSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred ceeeEEECC--CCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 123456666 777777765567799999998875 445443
No 94
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=55.17 E-value=1e+02 Score=26.67 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=18.8
Q ss_pred CCCEEEEEEcCcEEEEEECCCCcEEE
Q 040444 324 GGDKVLLEVNGEKLVWYDWKRKKLKT 349 (409)
Q Consensus 324 ~~~~ill~~~~~~l~~yd~~~~~~~~ 349 (409)
+|+.++......+++.+|++|+++..
T Consensus 175 ~g~~~v~~~~~~~v~~~d~~tG~~~w 200 (276)
T 3no2_A 175 NGDCLVACGDAHCFVQLNLESNRIVR 200 (276)
T ss_dssp TSCEEEECBTTSEEEEECTTTCCEEE
T ss_pred CCCEEEEeCCCCeEEEEeCcCCcEEE
Confidence 66766655556679999999777543
No 95
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=54.23 E-value=1.8e+02 Score=29.22 Aligned_cols=115 Identities=17% Similarity=0.105 Sum_probs=64.2
Q ss_pred CCeEEEEeecCCCCCCccEEEEEECCC--cceeeecCCCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEEEeecCCC
Q 040444 216 NGVVHWVSPRRPEFGIGNLIVAFDLGL--EEFRLLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLK 293 (409)
Q Consensus 216 ~G~lywl~~~~~~~~~~~~Il~fDl~~--e~~~~i~lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~~ 293 (409)
++.+|+.+.... ....|+..|+.+ +.|..+- |. .. ... ..+...++.|.+....+. ...||+++-.+
T Consensus 327 g~~l~~~s~~~~---~~~~l~~~d~~~~~~~~~~l~-~~-~~--~~l-~~~~~~~~~lv~~~~~dg-~~~l~~~~~~g-- 395 (741)
T 1yr2_A 327 GDQLWFVSGDGA---PLKKIVRVDLSGSTPRFDTVV-PE-SK--DNL-ESVGIAGNRLFASYIHDA-KSQVLAFDLDG-- 395 (741)
T ss_dssp TTEEEEEECTTC---TTCEEEEEECSSSSCEEEEEE-CC-CS--SEE-EEEEEEBTEEEEEEEETT-EEEEEEEETTS--
T ss_pred CCEEEEEECCCC---CCCEEEEEeCCCCccccEEEe-cC-CC--CeE-EEEEEECCEEEEEEEECC-EEEEEEEeCCC--
Confidence 446777655432 235699999987 5676653 33 11 111 123444788777665543 78899887422
Q ss_pred CceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEc----CcEEEEEECCCCcEEEE
Q 040444 294 ESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVN----GEKLVWYDWKRKKLKTV 350 (409)
Q Consensus 294 ~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~----~~~l~~yd~~~~~~~~v 350 (409)
. ....|..+. ......+.+.+ +++.|++... ...++.||+.+++.+.+
T Consensus 396 ~---~~~~l~~~~----~~~v~~~~~s~--d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l 447 (741)
T 1yr2_A 396 K---PAGAVSLPG----IGSASGLSGRP--GDRHAYLSFSSFTQPATVLALDPATAKTTPW 447 (741)
T ss_dssp C---EEEECBCSS----SCEEEEEECCB--TCSCEEEEEEETTEEEEEEEEETTTTEEEEC
T ss_pred C---ceeeccCCC----CeEEEEeecCC--CCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 1 333444321 11223344445 6666666532 24699999998875543
No 96
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=53.99 E-value=1e+02 Score=26.25 Aligned_cols=190 Identities=13% Similarity=0.162 Sum_probs=93.0
Q ss_pred cccceEEEeeC--CccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcce
Q 040444 94 SCNGLLALSNS--DQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFV 171 (409)
Q Consensus 94 sc~GLl~l~~~--~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~ 171 (409)
..+|.+.+... ...+.++|+..+....+.... .....++.+|+.. . ++... . .
T Consensus 86 ~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~----------~~~~~~i~~~~~g-~--l~v~~-~-----------~ 140 (286)
T 1q7f_A 86 RNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATI----------LQHPRGVTVDNKG-R--IIVVE-C-----------K 140 (286)
T ss_dssp TTTTEEEEEECGGGCEEEEECTTSCEEEEECTTT----------CSCEEEEEECTTS-C--EEEEE-T-----------T
T ss_pred cCCCeEEEEcCCCCCEEEEECCCCcEEEEecCcc----------CCCceEEEEeCCC-C--EEEEE-C-----------C
Confidence 35777766653 567899996555544453321 1223567777643 2 22221 0 1
Q ss_pred ecEEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEE--CCeEEEEeecCCCCCCccEEEEEECCCcceeeec
Q 040444 172 EYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYV--NGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLP 249 (409)
Q Consensus 172 ~~~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~ 249 (409)
...+.+|+.....-+.+..... . ....++.+ +|.+|...... ..|..||...+....+.
T Consensus 141 ~~~i~~~~~~g~~~~~~~~~~~-----------~--~~p~~i~~~~~g~l~v~~~~~------~~i~~~~~~g~~~~~~~ 201 (286)
T 1q7f_A 141 VMRVIIFDQNGNVLHKFGCSKH-----------L--EFPNGVVVNDKQEIFISDNRA------HCVKVFNYEGQYLRQIG 201 (286)
T ss_dssp TTEEEEECTTSCEEEEEECTTT-----------C--SSEEEEEECSSSEEEEEEGGG------TEEEEEETTCCEEEEES
T ss_pred CCEEEEEcCCCCEEEEeCCCCc-----------c--CCcEEEEECCCCCEEEEECCC------CEEEEEcCCCCEEEEEc
Confidence 2356677754433333321110 0 01122333 47866543322 25999999776666554
Q ss_pred CCCCCCCCCCceEEEEE-eCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEE
Q 040444 250 QPNYGAREKDFVLDVGA-LEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKV 328 (409)
Q Consensus 250 lP~~~~~~~~~~~~L~~-~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~i 328 (409)
.+. .. .....+.. -+|.|+++.......+.+|-. .+ . .+..+.... ......-+++.+ +| .+
T Consensus 202 ~~g-~~---~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~--~g---~--~~~~~~~~~---~~~~~~~i~~~~--~g-~l 264 (286)
T 1q7f_A 202 GEG-IT---NYPIGVGINSNGEILIADNHNNFNLTIFTQ--DG---Q--LISALESKV---KHAQCFDVALMD--DG-SV 264 (286)
T ss_dssp CTT-TS---CSEEEEEECTTCCEEEEECSSSCEEEEECT--TS---C--EEEEEEESS---CCSCEEEEEEET--TT-EE
T ss_pred cCC-cc---CCCcEEEECCCCCEEEEeCCCCEEEEEECC--CC---C--EEEEEcccC---CCCcceeEEECC--CC-cE
Confidence 432 11 11123444 368887776543237777742 12 1 222332211 011122355555 54 56
Q ss_pred EEEEcCcEEEEEECCC
Q 040444 329 LLEVNGEKLVWYDWKR 344 (409)
Q Consensus 329 ll~~~~~~l~~yd~~~ 344 (409)
++...+..+..|+...
T Consensus 265 ~vs~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 265 VLASKDYRLYIYRYVQ 280 (286)
T ss_dssp EEEETTTEEEEEECSC
T ss_pred EEECCCCeEEEEEccc
Confidence 6665566788887654
No 97
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=53.93 E-value=1.1e+02 Score=26.69 Aligned_cols=118 Identities=12% Similarity=0.038 Sum_probs=63.2
Q ss_pred EEECCeEEEEeecCCCCCCccEEEEEECCCcce-eeecCCCCCCC---CCCce-EEEEEe-CCe-EEEEEecCCCeEEEE
Q 040444 213 VYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEF-RLLPQPNYGAR---EKDFV-LDVGAL-EGH-MCLMCNYDLVKVDVW 285 (409)
Q Consensus 213 v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~-~~i~lP~~~~~---~~~~~-~~L~~~-~G~-L~~~~~~~~~~~~IW 285 (409)
+.-+|...|.+.... ..|..+|+.+.+. ..++.+. ... ..... ..+... +|. |++........+.+|
T Consensus 96 ~s~dg~~l~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~ 169 (353)
T 3vgz_A 96 INNTTQTLWFGNTVN-----SAVTAIDAKTGEVKGRLVLDD-RKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVV 169 (353)
T ss_dssp EETTTTEEEEEETTT-----TEEEEEETTTCCEEEEEESCC-CCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEE
T ss_pred ECCCCCEEEEEecCC-----CEEEEEeCCCCeeEEEEecCC-CccccccCCCCCceEEECCCCCEEEEEecCCCceEEEE
Confidence 344666333433322 2599999987665 4466654 210 00111 123332 444 555543333356666
Q ss_pred EEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcEEE
Q 040444 286 MMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKLKT 349 (409)
Q Consensus 286 ~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~~~ 349 (409)
-++. ......++.... ....+.+.+ +|+.+++...++.+..||+++++...
T Consensus 170 d~~~------~~~~~~~~~~~~-----~~~~~~~s~--dg~~l~~~~~~~~i~~~d~~~~~~~~ 220 (353)
T 3vgz_A 170 DGGN------IKLKTAIQNTGK-----MSTGLALDS--EGKRLYTTNADGELITIDTADNKILS 220 (353)
T ss_dssp ETTT------TEEEEEECCCCT-----TCCCCEEET--TTTEEEEECTTSEEEEEETTTTEEEE
T ss_pred cCCC------CceEEEecCCCC-----ccceEEECC--CCCEEEEEcCCCeEEEEECCCCeEEE
Confidence 4432 334444542111 123456777 88888887666789999999988654
No 98
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=51.31 E-value=1.2e+02 Score=26.27 Aligned_cols=68 Identities=7% Similarity=0.111 Sum_probs=40.7
Q ss_pred CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcE
Q 040444 268 EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKL 347 (409)
Q Consensus 268 ~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~ 347 (409)
++.+.+... ....+.||-++. -.....+.-. .....-+.+.+ ++..|+-...++.+..||.++.+.
T Consensus 197 ~~~~l~s~s-~D~~i~iWd~~~------~~~~~~~~~h-----~~~v~~~~~~p--~~~~l~s~s~Dg~i~iWd~~~~~~ 262 (304)
T 2ynn_A 197 DKPYMITAS-DDLTIKIWDYQT------KSCVATLEGH-----MSNVSFAVFHP--TLPIIISGSEDGTLKIWNSSTYKV 262 (304)
T ss_dssp TCCEEEEEE-TTSEEEEEETTT------TEEEEEEECC-----SSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCE
T ss_pred CCCEEEEEc-CCCeEEEEeCCC------CccceeeCCC-----CCCEEEEEECC--CCCEEEEEcCCCeEEEEECCCCce
Confidence 344434333 345999997763 1233333321 12234466777 767666666677799999999886
Q ss_pred EE
Q 040444 348 KT 349 (409)
Q Consensus 348 ~~ 349 (409)
..
T Consensus 263 ~~ 264 (304)
T 2ynn_A 263 EK 264 (304)
T ss_dssp EE
T ss_pred ee
Confidence 54
No 99
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=50.81 E-value=2.1e+02 Score=28.89 Aligned_cols=98 Identities=20% Similarity=0.313 Sum_probs=56.4
Q ss_pred EEEEEECCCcceeeecCCCCCCCCCCceEEEEEe-C--CeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCC
Q 040444 234 LIVAFDLGLEEFRLLPQPNYGAREKDFVLDVGAL-E--GHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISS 310 (409)
Q Consensus 234 ~Il~fDl~~e~~~~i~lP~~~~~~~~~~~~L~~~-~--G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~ 310 (409)
.|..+|+.+++...+..-. +. .... ..+.-. + |.+.+.+..+ ..+.||-++. ..|.....+...
T Consensus 32 ~I~vwd~~~~~~~~~~~l~-~h-~~~V-~~l~~s~~~~~~~l~s~s~D-g~I~vwd~~~----~~~~~~~~~~~h----- 98 (753)
T 3jro_A 32 TIKIFEVEGETHKLIDTLT-GH-EGPV-WRVDWAHPKFGTILASCSYD-GKVLIWKEEN----GRWSQIAVHAVH----- 98 (753)
T ss_dssp EEEEEEEETTEEEEEEEEC-CC-SSCE-EEEEECCTTSCSEEEEEETT-SCEEEEEEET----TEEEEEEEECCC-----
T ss_pred cEEEEecCCCCCccceecc-CC-cCce-EEEEecCCCCCCEEEEEeCC-CeEEEEECCC----CcccccccccCC-----
Confidence 4788888755554432111 11 1111 123332 2 5555555543 4899999885 346555554322
Q ss_pred cceeeeEEEEeecC--CCEEEEEEcCcEEEEEECCCCc
Q 040444 311 FRFLRPLICSNEDG--GDKVLLEVNGEKLVWYDWKRKK 346 (409)
Q Consensus 311 ~~~~~p~~~~~~~~--~~~ill~~~~~~l~~yd~~~~~ 346 (409)
.....-+.+.+ + +..++....++.+..||++++.
T Consensus 99 ~~~V~~v~~sp--~~~~~~l~sgs~dg~I~vwdl~~~~ 134 (753)
T 3jro_A 99 SASVNSVQWAP--HEYGPLLLVASSDGKVSVVEFKENG 134 (753)
T ss_dssp SSCEEEEEECC--GGGCSEEEEEETTSEEEEEECCSSS
T ss_pred CCCeEEEEECC--CCCCCEEEEEeCCCcEEEEEeecCC
Confidence 12244566666 5 7777777778889999998873
No 100
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=50.29 E-value=1.9e+02 Score=28.25 Aligned_cols=120 Identities=13% Similarity=0.104 Sum_probs=61.5
Q ss_pred cceEEECCeEEEEee-cCCCCCCccEEEEEEC-CCc--ceeeecCCCC-CCC----CCCceEEEEEeCCeEEEEEecCCC
Q 040444 210 GYGVYVNGVVHWVSP-RRPEFGIGNLIVAFDL-GLE--EFRLLPQPNY-GAR----EKDFVLDVGALEGHMCLMCNYDLV 280 (409)
Q Consensus 210 ~~~v~~~G~lywl~~-~~~~~~~~~~Il~fDl-~~e--~~~~i~lP~~-~~~----~~~~~~~L~~~~G~L~~~~~~~~~ 280 (409)
..++..+|.+|.... .. .|.++|. .+. .|+. .++.. ... .......+...+|++++.....
T Consensus 56 ~~P~v~~g~vyv~~~~~~-------~v~AlD~~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg-- 125 (571)
T 2ad6_A 56 GAPLVIGDMMYVHSAFPN-------NTYALNLNDPGKIVWQH-KPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANG-- 125 (571)
T ss_dssp SCCEEETTEEEEECSTTT-------CEEEEETTCTTSEEEEE-CCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTS--
T ss_pred cccEEECCEEEEEeCCCC-------EEEEEeCCCCccEEEEE-cCCCCccccccccccccccccEEECCEEEEEeCCC--
Confidence 456788999998765 33 3999998 654 4554 22220 000 0001112345677776654321
Q ss_pred eEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEc------CcEEEEEECCCCcEEE
Q 040444 281 KVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVN------GEKLVWYDWKRKKLKT 349 (409)
Q Consensus 281 ~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~------~~~l~~yd~~~~~~~~ 349 (409)
.|..++-...+..|.... .-.. ........|+.. + +.|++... +..|+.||.+|++...
T Consensus 126 --~l~alD~~tG~~~W~~~~--~~~~-~~~~~~~~P~v~----~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 190 (571)
T 2ad6_A 126 --HLLALDAKTGKINWEVEV--CDPK-VGSTLTQAPFVA----K-DTVLMGCSGAELGVRGAVNAFDLKTGELKW 190 (571)
T ss_dssp --EEEEEETTTCCEEEEEEC--CCGG-GTCBCCSCCEEE----T-TEEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred --EEEEEECCCCCEEEEecC--CCCC-ccceeccCCEEE----C-CEEEEEecCCccCCCCEEEEEECCCCcEEE
Confidence 244455322245676432 1100 000011234332 3 67777654 4579999999998765
No 101
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=49.69 E-value=1.5e+02 Score=26.72 Aligned_cols=94 Identities=13% Similarity=0.090 Sum_probs=50.8
Q ss_pred EEEEECCCcceeeecCC-CCCCCCCCceEEEEEe--CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCc
Q 040444 235 IVAFDLGLEEFRLLPQP-NYGAREKDFVLDVGAL--EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSF 311 (409)
Q Consensus 235 Il~fDl~~e~~~~i~lP-~~~~~~~~~~~~L~~~--~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~ 311 (409)
|..+|+.+..-....+. . ....-..+.-. +|.+.+....+ ..+.||-++.. .....+....
T Consensus 242 i~~~d~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~~l~s~~~d-g~v~~wd~~~~------~~~~~~~~~~----- 305 (416)
T 2pm9_A 242 ILIWDLRNANTPLQTLNQG----HQKGILSLDWCHQDEHLLLSSGRD-NTVLLWNPESA------EQLSQFPARG----- 305 (416)
T ss_dssp CCEEETTSTTSCSBCCCSC----CSSCEEEEEECSSCSSCEEEEESS-SEEEEECSSSC------CEEEEEECSS-----
T ss_pred EEEEeCCCCCCCcEEeecC----ccCceeEEEeCCCCCCeEEEEeCC-CCEEEeeCCCC------ccceeecCCC-----
Confidence 88889887532111222 1 11111133332 56665555543 48999987641 2344443211
Q ss_pred ceeeeEEEEeecCC-CEEEEEEcCcEEEEEECCCCc
Q 040444 312 RFLRPLICSNEDGG-DKVLLEVNGEKLVWYDWKRKK 346 (409)
Q Consensus 312 ~~~~p~~~~~~~~~-~~ill~~~~~~l~~yd~~~~~ 346 (409)
....-+.+.+ ++ ..++....++.+..||+.+..
T Consensus 306 ~~v~~~~~s~--~~~~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 306 NWCFKTKFAP--EAPDLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp SCCCCEEECT--TCTTEEEECCSSSEEEEEESCCCC
T ss_pred CceEEEEECC--CCCCEEEEEecCCcEEEEEccCCC
Confidence 1233466776 66 555555556779999998765
No 102
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=49.16 E-value=1.4e+02 Score=26.18 Aligned_cols=144 Identities=10% Similarity=0.063 Sum_probs=80.4
Q ss_pred ecEEEEEEcCCCceEEccccCcccccceeeeeeeeecccceE-EECCeEEEEeecCCCCCCccEEEEEECCCcc-eeeec
Q 040444 172 EYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGV-YVNGVVHWVSPRRPEFGIGNLIVAFDLGLEE-FRLLP 249 (409)
Q Consensus 172 ~~~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v-~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~-~~~i~ 249 (409)
...+.+++..++.=...-.++.. ....++ ..++.+|-+...+. .+..||..+.+ -..|+
T Consensus 64 ~S~v~~vD~~Tgkv~~~~~l~~~-------------~FgeGit~~g~~ly~ltw~~~------~v~v~D~~t~~~~~ti~ 124 (262)
T 3nol_A 64 RSSIRKVDIESGKTLQQIELGKR-------------YFGEGISDWKDKIVGLTWKNG------LGFVWNIRNLRQVRSFN 124 (262)
T ss_dssp EEEEEEECTTTCCEEEEEECCTT-------------CCEEEEEEETTEEEEEESSSS------EEEEEETTTCCEEEEEE
T ss_pred CceEEEEECCCCcEEEEEecCCc-------------cceeEEEEeCCEEEEEEeeCC------EEEEEECccCcEEEEEE
Confidence 45788999998753322222310 112223 45678988876554 59999998754 45577
Q ss_pred CCCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEE
Q 040444 250 QPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVL 329 (409)
Q Consensus 250 lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~il 329 (409)
.|. . ++ .|..-++.|++... . =.||.++-. .=....+|.............-+.+. + +.|+
T Consensus 125 ~~~-e----G~--glt~dg~~L~~SdG--s--~~i~~iDp~----T~~v~~~I~V~~~g~~~~~lNELe~~---~-G~ly 185 (262)
T 3nol_A 125 YDG-E----GW--GLTHNDQYLIMSDG--T--PVLRFLDPE----SLTPVRTITVTAHGEELPELNELEWV---D-GEIF 185 (262)
T ss_dssp CSS-C----CC--CEEECSSCEEECCS--S--SEEEEECTT----TCSEEEEEECEETTEECCCEEEEEEE---T-TEEE
T ss_pred CCC-C----ce--EEecCCCEEEEECC--C--CeEEEEcCC----CCeEEEEEEeccCCccccccceeEEE---C-CEEE
Confidence 765 1 12 24445666766542 2 247777742 12345555553211111111113332 4 5788
Q ss_pred EEEc-CcEEEEEECCCCcEE-EEEEe
Q 040444 330 LEVN-GEKLVWYDWKRKKLK-TVKID 353 (409)
Q Consensus 330 l~~~-~~~l~~yd~~~~~~~-~v~~~ 353 (409)
.+.. ...++..|++++++. .+.+.
T Consensus 186 an~w~~~~I~vIDp~tG~V~~~Id~~ 211 (262)
T 3nol_A 186 ANVWQTNKIVRIDPETGKVTGIIDLN 211 (262)
T ss_dssp EEETTSSEEEEECTTTCBEEEEEECT
T ss_pred EEEccCCeEEEEECCCCcEEEEEECC
Confidence 8764 467999999999975 45554
No 103
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=48.98 E-value=2.3e+02 Score=28.73 Aligned_cols=146 Identities=15% Similarity=0.181 Sum_probs=73.3
Q ss_pred EEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEE--CCeEEEEeecCCCCCCccEEEEEECCCcceeeecCC
Q 040444 174 EVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYV--NGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQP 251 (409)
Q Consensus 174 ~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP 251 (409)
.+..|+..++.|+.....+. .......-.++.. +|. .|++....+ |..||..+.++..+..+
T Consensus 470 Gl~~~~~~~~~~~~~~~~~~---------~~~~~~~i~~i~~d~~g~-lWigt~~~G------l~~~~~~~~~~~~~~~~ 533 (781)
T 3v9f_A 470 GVFVIDLASKKVIHHYDTSN---------SQLLENFVRSIAQDSEGR-FWIGTFGGG------VGIYTPDMQLVRKFNQY 533 (781)
T ss_dssp EEEEEESSSSSCCEEECTTT---------SSCSCSCEEEEEECTTCC-EEEEESSSC------EEEECTTCCEEEEECTT
T ss_pred ceEEEeCCCCeEEecccCcc---------cccccceeEEEEEcCCCC-EEEEEcCCC------EEEEeCCCCeEEEccCC
Confidence 56778888888766542220 0000011122333 355 477765333 89999999988887654
Q ss_pred CCCCCCCCceEEEEE-eCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEE
Q 040444 252 NYGAREKDFVLDVGA-LEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLL 330 (409)
Q Consensus 252 ~~~~~~~~~~~~L~~-~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill 330 (409)
. +. ....-..+.+ .+|.|.+... . .+ |..++.. ...+.. +........ ..+. ++... ..+.|.+
T Consensus 534 ~-~l-~~~~i~~i~~d~~g~lWi~T~-~--Gl-v~~~d~~--~~~~~~---~~~~~gl~~-~~i~--~i~~d-~~g~lW~ 598 (781)
T 3v9f_A 534 E-GF-CSNTINQIYRSSKGQMWLATG-E--GL-VCFPSAR--NFDYQV---FQRKEGLPN-THIR--AISED-KNGNIWA 598 (781)
T ss_dssp T-TC-SCSCEEEEEECTTSCEEEEET-T--EE-EEESCTT--TCCCEE---ECGGGTCSC-CCCC--EEEEC-SSSCEEE
T ss_pred C-CC-CCCeeEEEEECCCCCEEEEEC-C--Cc-eEEECCC--CCcEEE---ccccCCCCC-ceEE--EEEEC-CCCCEEE
Confidence 4 33 1122223444 3677777654 1 22 0222221 122322 222111111 1122 33331 3356788
Q ss_pred EEcCcEEEEEECCCCcEEEEE
Q 040444 331 EVNGEKLVWYDWKRKKLKTVK 351 (409)
Q Consensus 331 ~~~~~~l~~yd~~~~~~~~v~ 351 (409)
.+..+ |..||+++++++...
T Consensus 599 ~t~~G-l~~~~~~~~~~~~~~ 618 (781)
T 3v9f_A 599 STNTG-ISCYITSKKCFYTYD 618 (781)
T ss_dssp ECSSC-EEEEETTTTEEEEEC
T ss_pred EcCCc-eEEEECCCCceEEec
Confidence 76554 999999999887763
No 104
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=48.88 E-value=1.6e+02 Score=27.01 Aligned_cols=105 Identities=10% Similarity=0.108 Sum_probs=54.8
Q ss_pred EEECCeEEEEeecCCCCCCccEEEEEECCCcceee-ecCCCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEEEeecC
Q 040444 213 VYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRL-LPQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYG 291 (409)
Q Consensus 213 v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~-i~lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~ 291 (409)
+..+|.....+..+. .|..+|+.+.+... +.... .. +.-...+|.+.++...+ ..+.||-+...
T Consensus 262 ~~~~~~~l~s~~~dg------~i~vwd~~~~~~~~~~~~~~-----~~--v~~~~~~~~~l~~g~~d-g~i~iwd~~~~- 326 (435)
T 1p22_A 262 VDFDDKYIVSASGDR------TIKVWNTSTCEFVRTLNGHK-----RG--IACLQYRDRLVVSGSSD-NTIRLWDIECG- 326 (435)
T ss_dssp EEEETTEEEEEETTS------EEEEEETTTCCEEEEEECCS-----SC--EEEEEEETTEEEEEETT-SCEEEEETTTC-
T ss_pred EEeCCCEEEEEeCCC------eEEEEECCcCcEEEEEcCCC-----Cc--EEEEEeCCCEEEEEeCC-CeEEEEECCCC-
Confidence 334565444443332 48999998765432 32221 11 12223355555555443 48999987641
Q ss_pred CCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCc
Q 040444 292 LKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKK 346 (409)
Q Consensus 292 ~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~ 346 (409)
.....+.... .... ++.- ++..++....++.+..||++++.
T Consensus 327 -----~~~~~~~~h~-----~~v~--~~~~--~~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 327 -----ACLRVLEGHE-----ELVR--CIRF--DNKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp -----CEEEEECCCS-----SCEE--EEEC--CSSEEEEEETTSCEEEEEHHHHT
T ss_pred -----CEEEEEeCCc-----CcEE--EEEe--cCCEEEEEeCCCcEEEEECCCCC
Confidence 2333333211 1122 2333 55777777777789999987654
No 105
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=48.19 E-value=1.4e+02 Score=26.07 Aligned_cols=70 Identities=13% Similarity=0.193 Sum_probs=44.0
Q ss_pred CeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcEE
Q 040444 269 GHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKLK 348 (409)
Q Consensus 269 G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~~ 348 (409)
|.+.++...+ ..+.||-++..+ ......+... .....-+.+.+ ++..|+....++.+..||+++++..
T Consensus 54 g~~l~~~~~d-g~i~iw~~~~~~----~~~~~~~~~h-----~~~v~~~~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~ 121 (368)
T 3mmy_A 54 GNFLIAGSWA-NDVRCWEVQDSG----QTIPKAQQMH-----TGPVLDVCWSD--DGSKVFTASCDKTAKMWDLSSNQAI 121 (368)
T ss_dssp SEEEEEEETT-SEEEEEEECTTS----CEEEEEEEEC-----SSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEE
T ss_pred ceEEEEECCC-CcEEEEEcCCCC----ceeEEEeccc-----cCCEEEEEECc--CCCEEEEEcCCCcEEEEEcCCCCce
Confidence 4655555443 489999998522 2222222221 11244567777 7777777777788999999999876
Q ss_pred EE
Q 040444 349 TV 350 (409)
Q Consensus 349 ~v 350 (409)
.+
T Consensus 122 ~~ 123 (368)
T 3mmy_A 122 QI 123 (368)
T ss_dssp EE
T ss_pred ee
Confidence 54
No 106
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=48.03 E-value=1.6e+02 Score=29.75 Aligned_cols=110 Identities=15% Similarity=0.076 Sum_probs=53.9
Q ss_pred CCeEEEEeecCCCCCCccEEEEEECCCcceeeecCCCCCCCCCCceEEEEE--eCCeEEEEEecCCCeEEEEEEeecCCC
Q 040444 216 NGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDFVLDVGA--LEGHMCLMCNYDLVKVDVWMMKEYGLK 293 (409)
Q Consensus 216 ~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~~L~~--~~G~L~~~~~~~~~~~~IW~l~~~~~~ 293 (409)
+|.|||...... ..|..+|+....-..+-... . .... .|.. .+|+|+++..... . |++++-.|.
T Consensus 507 ~g~ly~td~~~~-----~~I~~~~~dG~~~~~l~~~~--l-~~Pn--Glavd~~~~~LY~aD~~~~-~--I~~~d~dG~- 572 (699)
T 1n7d_A 507 HGFMYWTDWGTP-----AKIKKGGLNGVDIYSLVTEN--I-QWPN--GITLDLLSGRLYWVDSKLH-S--ISSIDVNGG- 572 (699)
T ss_dssp SSCCEECCCSSS-----CCEEBCCSSSCCCCEESCSS--C-SSCC--CEEECTTTCCEEEEETTTT-E--EEEECSSSS-
T ss_pred CCcEEEcccCCC-----CeEEEEeCCCCCeeEEEeCC--C-CCcc--EEEEeccCCEEEEEecCCC-e--EEEEccCCC-
Confidence 589999764321 24888888654333321111 1 0001 1333 3678888775432 3 455543231
Q ss_pred CceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEc-CcEEEEEECCCCcEEE
Q 040444 294 ESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVN-GEKLVWYDWKRKKLKT 349 (409)
Q Consensus 294 ~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~-~~~l~~yd~~~~~~~~ 349 (409)
. .+ ..+... .....|.++.. +++.||+... ...|..+|..+++...
T Consensus 573 ~--~~-~~~~~~-----~~~~~P~glav--d~~~lywtd~~~~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 573 N--RK-TILEDE-----KRLAHPFSLAV--FEDKVFWTDIINEAIFSANRLTGSDVN 619 (699)
T ss_dssp C--CE-EECCCS-----SSCSSCCCCEE--ETTEEEEECSTTTCEEEEETTTEEEEE
T ss_pred c--eE-EEEecC-----CcCCCceEeEE--ECCEEEEEeCCCCeEEEEEccCCCceE
Confidence 1 11 111111 01134555554 4466666543 3569999998776544
No 107
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=46.90 E-value=1.4e+02 Score=25.64 Aligned_cols=201 Identities=7% Similarity=-0.030 Sum_probs=99.2
Q ss_pred eEEEeeCCccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEEE
Q 040444 98 LLALSNSDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKV 177 (409)
Q Consensus 98 Ll~l~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~v 177 (409)
|+........++++||.++ ...+..+. ....++.+|+... ++... . ....+.+
T Consensus 42 l~~~~~~~~~i~~~~~~~~-~~~~~~~~-----------~~~~~l~~~~dg~---l~v~~-~-----------~~~~i~~ 94 (296)
T 3e5z_A 42 VIFSDVRQNRTWAWSDDGQ-LSPEMHPS-----------HHQNGHCLNKQGH---LIACS-H-----------GLRRLER 94 (296)
T ss_dssp EEEEEGGGTEEEEEETTSC-EEEEESSC-----------SSEEEEEECTTCC---EEEEE-T-----------TTTEEEE
T ss_pred EEEEeCCCCEEEEEECCCC-eEEEECCC-----------CCcceeeECCCCc---EEEEe-c-----------CCCeEEE
Confidence 4444444568999999998 55554321 1235677776432 22221 1 1235778
Q ss_pred EEcCCCceEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecC-----------CCCCCccEEEEEECCCccee
Q 040444 178 FSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRR-----------PEFGIGNLIVAFDLGLEEFR 246 (409)
Q Consensus 178 yss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~-----------~~~~~~~~Il~fDl~~e~~~ 246 (409)
|+..++..+.+...... ........-.+--+|.+|...... ........|..+|.. .++.
T Consensus 95 ~d~~~g~~~~~~~~~~~--------~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~ 165 (296)
T 3e5z_A 95 QREPGGEWESIADSFEG--------KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS 165 (296)
T ss_dssp ECSTTCCEEEEECEETT--------EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE
T ss_pred EcCCCCcEEEEeeccCC--------CCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE
Confidence 88877776655321100 000000111122357766532100 000012368999987 5554
Q ss_pred eecCCCCCCCCCCceEEEEEe-CCeEEEEEecCCCeEEEEEEeecCCCCce-eEEEEeecccccCCcceeeeEEEEeecC
Q 040444 247 LLPQPNYGAREKDFVLDVGAL-EGHMCLMCNYDLVKVDVWMMKEYGLKESW-SKMFSIDRCRSISSFRFLRPLICSNEDG 324 (409)
Q Consensus 247 ~i~lP~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~~IW~l~~~~~~~~W-~~~~~I~~~~~~~~~~~~~p~~~~~~~~ 324 (409)
.+.-.. . ..-.+... +|++. +.......+.+|-+++. ... .....+.. . .....-+++.+ +
T Consensus 166 ~~~~~~-~-----~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~---g~~~~~~~~~~~-~----~~~p~~i~~d~--~ 228 (296)
T 3e5z_A 166 APIRDR-V-----KPNGLAFLPSGNLL-VSDTGDNATHRYCLNAR---GETEYQGVHFTV-E----PGKTDGLRVDA--G 228 (296)
T ss_dssp EEECCC-S-----SEEEEEECTTSCEE-EEETTTTEEEEEEECSS---SCEEEEEEEECC-S----SSCCCSEEEBT--T
T ss_pred EeecCC-C-----CCccEEECCCCCEE-EEeCCCCeEEEEEECCC---CcCcCCCeEeeC-C----CCCCCeEEECC--C
Confidence 432211 1 11123333 66665 44444447777777632 233 22232311 1 11122355555 6
Q ss_pred CCEEEEEEcCcEEEEEECCCCcEEEEEEe
Q 040444 325 GDKVLLEVNGEKLVWYDWKRKKLKTVKID 353 (409)
Q Consensus 325 ~~~ill~~~~~~l~~yd~~~~~~~~v~~~ 353 (409)
|. |++.. ...|..||++.+.++.+..+
T Consensus 229 G~-l~v~~-~~~v~~~~~~g~~~~~~~~~ 255 (296)
T 3e5z_A 229 GL-IWASA-GDGVHVLTPDGDELGRVLTP 255 (296)
T ss_dssp SC-EEEEE-TTEEEEECTTSCEEEEEECS
T ss_pred CC-EEEEc-CCeEEEECCCCCEEEEEECC
Confidence 54 66666 66799999998777777654
No 108
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=46.27 E-value=1.8e+02 Score=26.79 Aligned_cols=68 Identities=12% Similarity=0.221 Sum_probs=40.9
Q ss_pred eCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCc
Q 040444 267 LEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKK 346 (409)
Q Consensus 267 ~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~ 346 (409)
.+|.+.++...+ ..+.+|-+.. ......+... ......+.+.+ ++..++....++.+..||+++++
T Consensus 278 ~~~~~l~~~~~d-~~i~vwd~~~------~~~~~~~~~~-----~~~v~~~~~~~--~~~~l~sg~~dg~i~vwd~~~~~ 343 (464)
T 3v7d_B 278 GHGNIVVSGSYD-NTLIVWDVAQ------MKCLYILSGH-----TDRIYSTIYDH--ERKRCISASMDTTIRIWDLENGE 343 (464)
T ss_dssp EETTEEEEEETT-SCEEEEETTT------TEEEEEECCC-----SSCEEEEEEET--TTTEEEEEETTSCEEEEETTTTE
T ss_pred CCCCEEEEEeCC-CeEEEEECCC------CcEEEEecCC-----CCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCc
Confidence 344444444443 4899997753 1233333211 12244567777 77777777777789999998877
Q ss_pred EE
Q 040444 347 LK 348 (409)
Q Consensus 347 ~~ 348 (409)
..
T Consensus 344 ~~ 345 (464)
T 3v7d_B 344 LM 345 (464)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 109
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=45.99 E-value=1.5e+02 Score=25.68 Aligned_cols=74 Identities=15% Similarity=0.139 Sum_probs=45.7
Q ss_pred CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEc-CcEEEEE--ECCC
Q 040444 268 EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVN-GEKLVWY--DWKR 344 (409)
Q Consensus 268 ~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~-~~~l~~y--d~~~ 344 (409)
+|+..++.......+.+|.++..+ ..+.....+..... ..-+++.+ +|..+++... +..+..| |.++
T Consensus 241 dg~~l~v~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~------~~~~~~s~--dg~~l~~~~~~~~~v~v~~~d~~~ 310 (343)
T 1ri6_A 241 DGRHLYACDRTASLITVFSVSEDG--SVLSKEGFQPTETQ------PRGFNVDH--SGKYLIAAGQKSHHISVYEIVGEQ 310 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTS--CCEEEEEEEECSSS------CCCEEECT--TSSEEEEECTTTCEEEEEEEETTT
T ss_pred CCCEEEEEecCCCEEEEEEEcCCC--CceEEeeeecCCCc------cceEEECC--CCCEEEEecCCCCeEEEEEEcCCC
Confidence 454434444444589999998532 34666666654321 23467777 7777777653 4566666 8888
Q ss_pred CcEEEEE
Q 040444 345 KKLKTVK 351 (409)
Q Consensus 345 ~~~~~v~ 351 (409)
++++.+.
T Consensus 311 g~~~~~~ 317 (343)
T 1ri6_A 311 GLLHEKG 317 (343)
T ss_dssp TEEEEEE
T ss_pred ceeeEcc
Confidence 8887764
No 110
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=45.66 E-value=1.5e+02 Score=25.81 Aligned_cols=69 Identities=10% Similarity=0.049 Sum_probs=42.2
Q ss_pred CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcE
Q 040444 268 EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKL 347 (409)
Q Consensus 268 ~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~ 347 (409)
+|.+.++... ...+.+|-+... ......+.... ....-+.+.+ ++..++....++.+..||+++++.
T Consensus 186 ~~~~l~~~~~-dg~i~i~d~~~~-----~~~~~~~~~~~-----~~v~~~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~ 252 (369)
T 3zwl_B 186 KGKYIIAGHK-DGKISKYDVSNN-----YEYVDSIDLHE-----KSISDMQFSP--DLTYFITSSRDTNSFLVDVSTLQV 252 (369)
T ss_dssp GGCEEEEEET-TSEEEEEETTTT-----TEEEEEEECCS-----SCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCE
T ss_pred CCCEEEEEcC-CCEEEEEECCCC-----cEeEEEEecCC-----CceeEEEECC--CCCEEEEecCCceEEEEECCCCce
Confidence 4555444444 348999987641 23333333211 1234466766 777777777778899999998876
Q ss_pred EE
Q 040444 348 KT 349 (409)
Q Consensus 348 ~~ 349 (409)
..
T Consensus 253 ~~ 254 (369)
T 3zwl_B 253 LK 254 (369)
T ss_dssp EE
T ss_pred ee
Confidence 43
No 111
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=45.64 E-value=1.7e+02 Score=29.30 Aligned_cols=121 Identities=14% Similarity=0.046 Sum_probs=60.6
Q ss_pred cceEEECCeEEEEeecCCCCCCccEEEEEECCCc--ceeeecCCCC-CCC----CCCceEEEEEeCCeEEEEEecCCCeE
Q 040444 210 GYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLE--EFRLLPQPNY-GAR----EKDFVLDVGALEGHMCLMCNYDLVKV 282 (409)
Q Consensus 210 ~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e--~~~~i~lP~~-~~~----~~~~~~~L~~~~G~L~~~~~~~~~~~ 282 (409)
..++..+|.+|...... .|.++|..+. .|+. ..+.. ... .+.....+...+|+|++.... ..
T Consensus 71 ~~P~v~~g~vyv~~~~~-------~v~AlD~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~d--g~- 139 (677)
T 1kb0_A 71 ATPVVVDGIMYVSASWS-------VVHAIDTRTGNRIWTY-DPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWD--GR- 139 (677)
T ss_dssp CCCEEETTEEEEECGGG-------CEEEEETTTTEEEEEE-CCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTT--SE-
T ss_pred eCCEEECCEEEEECCCC-------eEEEEECCCCcEEEEE-cCCCCccccccccccCCCCCceEECCEEEEEcCC--CE-
Confidence 44578899999876543 3999998765 4554 22210 000 000111234467776665322 12
Q ss_pred EEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEc------CcEEEEEECCCCcEEE
Q 040444 283 DVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVN------GEKLVWYDWKRKKLKT 349 (409)
Q Consensus 283 ~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~------~~~l~~yd~~~~~~~~ 349 (409)
|..++-...+..|......+... .......|+.. ++.|++... ++.|+.||.+|++...
T Consensus 140 -l~alD~~tG~~~W~~~~~~~~~~--~~~~~~~p~v~-----~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 140 -LIALDAATGKEVWHQNTFEGQKG--SLTITGAPRVF-----KGKVIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp -EEEEETTTCCEEEEEETTTTCCS--SCBCCSCCEEE-----TTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred -EEEEECCCCCEEeeecCCcCcCc--CcccccCcEEE-----CCEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence 44444322245675531100000 00011234332 366776543 3579999999998765
No 112
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=45.31 E-value=1.6e+02 Score=25.88 Aligned_cols=95 Identities=6% Similarity=0.069 Sum_probs=53.3
Q ss_pred EEEEECCCccee-eecCCCCCCCCCCceEEEEEe-CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcc
Q 040444 235 IVAFDLGLEEFR-LLPQPNYGAREKDFVLDVGAL-EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFR 312 (409)
Q Consensus 235 Il~fDl~~e~~~-~i~lP~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~ 312 (409)
|..+|+.+.+.. .+......+ . .+.-. +|.+.+... ....+.||-++.. .....+.- ...
T Consensus 188 i~iwd~~~~~~~~~~~~h~~~v-----~-~l~~spd~~~l~s~s-~dg~i~iwd~~~~------~~~~~~~~-----h~~ 249 (321)
T 3ow8_A 188 INIFDIATGKLLHTLEGHAMPI-----R-SLTFSPDSQLLVTAS-DDGYIKIYDVQHA------NLAGTLSG-----HAS 249 (321)
T ss_dssp EEEEETTTTEEEEEECCCSSCC-----C-EEEECTTSCEEEEEC-TTSCEEEEETTTC------CEEEEECC-----CSS
T ss_pred EEEEECCCCcEEEEEcccCCce-----e-EEEEcCCCCEEEEEc-CCCeEEEEECCCc------ceeEEEcC-----CCC
Confidence 888998876543 233222011 1 22222 566544443 3448999987641 12222221 112
Q ss_pred eeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcEEE
Q 040444 313 FLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKLKT 349 (409)
Q Consensus 313 ~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~~~ 349 (409)
...-+++.+ ++..++....++.+..||+++++...
T Consensus 250 ~v~~~~~sp--~~~~l~s~s~D~~v~iwd~~~~~~~~ 284 (321)
T 3ow8_A 250 WVLNVAFCP--DDTHFVSSSSDKSVKVWDVGTRTCVH 284 (321)
T ss_dssp CEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred ceEEEEECC--CCCEEEEEeCCCcEEEEeCCCCEEEE
Confidence 244567777 77777766677789999999887543
No 113
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=43.94 E-value=1.7e+02 Score=28.26 Aligned_cols=106 Identities=8% Similarity=0.032 Sum_probs=62.9
Q ss_pred EEEEEECCCcceee-ecCCCCCCCCCCceEEEEEeC-CeEEEEEecCCCeEEEEEEeecCC-CCceeEEEEeecccccCC
Q 040444 234 LIVAFDLGLEEFRL-LPQPNYGAREKDFVLDVGALE-GHMCLMCNYDLVKVDVWMMKEYGL-KESWSKMFSIDRCRSISS 310 (409)
Q Consensus 234 ~Il~fDl~~e~~~~-i~lP~~~~~~~~~~~~L~~~~-G~L~~~~~~~~~~~~IW~l~~~~~-~~~W~~~~~I~~~~~~~~ 310 (409)
.|..+|+.+.+... ++... .. +......+..-+ |.+++........+.||-++..+. +..|..+.+|.....
T Consensus 347 ~v~v~D~~tg~l~~~i~~g~-~p-h~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~--- 421 (543)
T 1nir_A 347 KVAVIDSKDRRLSALVDVGK-TP-HPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG--- 421 (543)
T ss_dssp EEEEEETTTTEEEEEEECSS-SB-CCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS---
T ss_pred eEEEEECCCCeEEEeeccCC-CC-CCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC---
Confidence 58889999876543 33311 00 111112233333 666555444456999998875321 245998888886321
Q ss_pred cceeeeEEEEeecCCCEEEEEE--c-----CcEEEEEECCCCcEE
Q 040444 311 FRFLRPLICSNEDGGDKVLLEV--N-----GEKLVWYDWKRKKLK 348 (409)
Q Consensus 311 ~~~~~p~~~~~~~~~~~ill~~--~-----~~~l~~yd~~~~~~~ 348 (409)
...-+.+++ +|..++... + +..+..||.++.+..
T Consensus 422 --~~~~v~~~p--dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 422 --GSLFIKTHP--KSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp --CCCCEECCT--TCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred --CceEEEcCC--CCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 123467778 888877754 1 346999999988753
No 114
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=43.24 E-value=1.7e+02 Score=25.55 Aligned_cols=102 Identities=13% Similarity=0.079 Sum_probs=53.1
Q ss_pred EEEEEECCCcceee-ecCCCCCCCCCCceEEEEE-eCCeEEEEEecC----CCeEEEEEEeecCCCCceeEEEEeecccc
Q 040444 234 LIVAFDLGLEEFRL-LPQPNYGAREKDFVLDVGA-LEGHMCLMCNYD----LVKVDVWMMKEYGLKESWSKMFSIDRCRS 307 (409)
Q Consensus 234 ~Il~fDl~~e~~~~-i~lP~~~~~~~~~~~~L~~-~~G~L~~~~~~~----~~~~~IW~l~~~~~~~~W~~~~~I~~~~~ 307 (409)
.|..+|+.+.+... +..+. .. . .+.. -+|...++.... ...+.+|-+........+.....-.....
T Consensus 97 ~i~iwd~~~~~~~~~~~~~~-~v-----~-~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~ 169 (369)
T 3zwl_B 97 SIKLWDVSNGQCVATWKSPV-PV-----K-RVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI 169 (369)
T ss_dssp EEEEEETTTCCEEEEEECSS-CE-----E-EEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE
T ss_pred eEEEEECCCCcEEEEeecCC-Ce-----E-EEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeec
Confidence 48888887665433 33222 11 1 1222 245554444433 14899999987543222222110000000
Q ss_pred cC--CcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCC
Q 040444 308 IS--SFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKR 344 (409)
Q Consensus 308 ~~--~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~ 344 (409)
.. ......-+.+.+ ++..++....++.+..||+++
T Consensus 170 ~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~ 206 (369)
T 3zwl_B 170 ITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSN 206 (369)
T ss_dssp ECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTT
T ss_pred cCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCC
Confidence 00 011344566666 777777777778899999998
No 115
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=42.42 E-value=3.5e+02 Score=28.96 Aligned_cols=99 Identities=16% Similarity=0.212 Sum_probs=51.5
Q ss_pred EEEEECCCcceee-ecCCCCCCCCCCceEEEEEe-CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccC---
Q 040444 235 IVAFDLGLEEFRL-LPQPNYGAREKDFVLDVGAL-EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSIS--- 309 (409)
Q Consensus 235 Il~fDl~~e~~~~-i~lP~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~--- 309 (409)
|..+|+.+.+... +.... .... .+... +|...+.... ...+.+|-+.... ....+.......
T Consensus 725 v~vwd~~~~~~~~~~~~h~-----~~v~-~~~~sp~~~~l~s~s~-dg~v~vwd~~~~~------~~~~~~~~~~~~~~~ 791 (1249)
T 3sfz_A 725 LKLWDLNQKECRNTMFGHT-----NSVN-HCRFSPDDELLASCSA-DGTLRLWDVRSAN------ERKSINVKRFFLSSE 791 (1249)
T ss_dssp EEEEETTSSSEEEEECCCS-----SCEE-EEEECSSTTEEEEEES-SSEEEEEEGGGTE------EEEEEECCCCC----
T ss_pred EEEEECCCcchhheecCCC-----CCEE-EEEEecCCCEEEEEEC-CCeEEEEeCCCCc------ccceecccccccccC
Confidence 8889988766433 22111 1111 22222 5555444444 3489999887521 222222211100
Q ss_pred -----CcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcEEE
Q 040444 310 -----SFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKLKT 349 (409)
Q Consensus 310 -----~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~~~ 349 (409)
......-+.+.+ +|..++... .+.+..||+.++....
T Consensus 792 ~~~~~~~~~v~~~~~s~--dg~~l~~~~-~~~v~~~d~~~~~~~~ 833 (1249)
T 3sfz_A 792 DPPEDVEVIVKCCSWSA--DGDKIIVAA-KNKVLLFDIHTSGLLA 833 (1249)
T ss_dssp ----CCCCCBCCCCBCT--TSSEEEEEE-TTEEEEEETTTCCEEE
T ss_pred CccccccceEEEEEECC--CCCEEEEEc-CCcEEEEEecCCCcee
Confidence 001223345666 777777665 4579999999887644
No 116
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=41.45 E-value=49 Score=24.96 Aligned_cols=42 Identities=17% Similarity=0.326 Sum_probs=29.9
Q ss_pred cEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEE
Q 040444 107 DIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMV 157 (409)
Q Consensus 107 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~ 157 (409)
.+++.+|.|+.| +|..... .......+..|...+.|.|+...
T Consensus 12 ~V~~~d~~~~~W--~p~~~g~-------~gvs~V~~~~d~~~~~yrI~~~~ 53 (115)
T 1egx_A 12 TVMLYDDGNKRW--LPAGTGP-------QAFSRVQIYHNPTANSFRVVGRK 53 (115)
T ss_dssp ECBEECTTTSSC--CBSSCSC-------CCCEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEcCCCCce--eECCCCC-------CCccEEEEEEeCCCCEEEEEEEE
Confidence 578899999997 4543210 13345778889888999999875
No 117
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=40.36 E-value=2e+02 Score=25.65 Aligned_cols=95 Identities=8% Similarity=-0.019 Sum_probs=51.6
Q ss_pred EEEEEECCCcceee-ecCCCCCCCCCCceEEEEEe-CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCc
Q 040444 234 LIVAFDLGLEEFRL-LPQPNYGAREKDFVLDVGAL-EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSF 311 (409)
Q Consensus 234 ~Il~fDl~~e~~~~-i~lP~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~ 311 (409)
.|..+|+.+.+... +.... ... ..+... +|.+.++... ...+.||-+.... ....+... .
T Consensus 228 ~i~~~d~~~~~~~~~~~~~~-----~~i-~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~------~~~~~~~~-----~ 289 (425)
T 1r5m_A 228 AIFVYQITEKTPTGKLIGHH-----GPI-SVLEFNDTNKLLLSASD-DGTLRIWHGGNGN------SQNCFYGH-----S 289 (425)
T ss_dssp CEEEEETTCSSCSEEECCCS-----SCE-EEEEEETTTTEEEEEET-TSCEEEECSSSBS------CSEEECCC-----S
T ss_pred eEEEEEcCCCceeeeeccCC-----Cce-EEEEECCCCCEEEEEcC-CCEEEEEECCCCc------cceEecCC-----C
Confidence 38999998764332 22211 111 123322 5554444443 3489999876421 11122111 1
Q ss_pred ceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcEEE
Q 040444 312 RFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKLKT 349 (409)
Q Consensus 312 ~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~~~ 349 (409)
....-+.+.+ ++ .++....++.+..||+++++...
T Consensus 290 ~~i~~~~~~~--~~-~l~~~~~d~~i~i~d~~~~~~~~ 324 (425)
T 1r5m_A 290 QSIVSASWVG--DD-KVISCSMDGSVRLWSLKQNTLLA 324 (425)
T ss_dssp SCEEEEEEET--TT-EEEEEETTSEEEEEETTTTEEEE
T ss_pred ccEEEEEECC--CC-EEEEEeCCCcEEEEECCCCcEeE
Confidence 1234456666 65 66666677889999999887543
No 118
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=40.25 E-value=1.1e+02 Score=28.10 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=28.6
Q ss_pred eeEEEEeecCCCEEEEEEcCcEEEEEECCCCcEEEE
Q 040444 315 RPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKLKTV 350 (409)
Q Consensus 315 ~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~~~v 350 (409)
-|+++.-.+.-+.|++.+..+.++.||++|++.-..
T Consensus 261 FPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~ 296 (365)
T 2xzh_A 261 FPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM 296 (365)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred ceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEE
Confidence 366665544779999999988999999999996443
No 119
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=40.21 E-value=1.8e+02 Score=25.02 Aligned_cols=66 Identities=6% Similarity=0.074 Sum_probs=37.9
Q ss_pred eEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCC--CEEEE-EEcCcEEEEEECCCC
Q 040444 270 HMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGG--DKVLL-EVNGEKLVWYDWKRK 345 (409)
Q Consensus 270 ~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~--~~ill-~~~~~~l~~yd~~~~ 345 (409)
.+.+.... +..+.||-++.. ...|.....+.-. .....-+.+.+ ++ +.+++ ...++.+..||+++.
T Consensus 171 ~~l~sgs~-D~~v~lwd~~~~--~~~~~~~~~l~~H-----~~~V~~v~~sp--~~~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 171 RKFVTGGA-DNLVKIWKYNSD--AQTYVLESTLEGH-----SDWVRDVAWSP--TVLLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp CEEEEEET-TSCEEEEEEETT--TTEEEEEEEECCC-----SSCEEEEEECC--CCSSSEEEEEEETTSCEEEEEESST
T ss_pred ceEEEEcC-CCcEEEEEEcCC--CceEEEEEEecCC-----CCceEEEEECC--CCCCceEEEEEECCCcEEEEEeCCC
Confidence 34333333 448999998752 2456665554321 12345567766 53 34444 445667999998774
No 120
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=40.01 E-value=1.8e+02 Score=25.12 Aligned_cols=100 Identities=11% Similarity=0.020 Sum_probs=51.9
Q ss_pred EEEEEECCCccee-eecCCCCCCCCCCceEEEEE-eCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCC-
Q 040444 234 LIVAFDLGLEEFR-LLPQPNYGAREKDFVLDVGA-LEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISS- 310 (409)
Q Consensus 234 ~Il~fDl~~e~~~-~i~lP~~~~~~~~~~~~L~~-~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~- 310 (409)
.|..+|+.+.+.. .++++. .. ... .+.. -+|+..++.......+.+|-++. . .....+........
T Consensus 22 ~v~~~d~~~~~~~~~~~~~~-~~--~~~--~~~~s~dg~~~~v~~~~~~~i~~~d~~t----~--~~~~~~~~~~~~~~~ 90 (349)
T 1jmx_B 22 NLHVVDVASDTVYKSCVMPD-KF--GPG--TAMMAPDNRTAYVLNNHYGDIYGIDLDT----C--KNTFHANLSSVPGEV 90 (349)
T ss_dssp EEEEEETTTTEEEEEEECSS-CC--SSC--EEEECTTSSEEEEEETTTTEEEEEETTT----T--EEEEEEESCCSTTEE
T ss_pred eEEEEECCCCcEEEEEecCC-CC--CCc--eeEECCCCCEEEEEeCCCCcEEEEeCCC----C--cEEEEEEcccccccc
Confidence 5999999886653 455554 11 111 2222 35654444433344777776542 1 23333443211000
Q ss_pred cceeeeEEEEeecCCCEEEEEEcC------------cEEEEEECCCCc
Q 040444 311 FRFLRPLICSNEDGGDKVLLEVNG------------EKLVWYDWKRKK 346 (409)
Q Consensus 311 ~~~~~p~~~~~~~~~~~ill~~~~------------~~l~~yd~~~~~ 346 (409)
......+.+.+ +|..+++...+ ..+..||+++++
T Consensus 91 ~~~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 136 (349)
T 1jmx_B 91 GRSMYSFAISP--DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL 136 (349)
T ss_dssp EECSSCEEECT--TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred cccccceEECC--CCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence 01123456777 77777776532 679999998844
No 121
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=40.00 E-value=14 Score=22.76 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=12.6
Q ss_pred CCCcHHHHHHHHhcCC
Q 040444 2 SKVPLDVVTGTLYQLP 17 (409)
Q Consensus 2 ~~LP~Dll~eIL~rLP 17 (409)
..||.||.+|||+--.
T Consensus 22 ~~LP~dIQ~Ells~~~ 37 (48)
T 2kwv_A 22 KQLPADIQEEILSGKS 37 (48)
T ss_dssp TTSCHHHHHHHTTCCC
T ss_pred HHCcHHHHHHHHhcch
Confidence 4689999999988654
No 122
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=39.73 E-value=1.9e+02 Score=25.17 Aligned_cols=68 Identities=9% Similarity=0.151 Sum_probs=39.0
Q ss_pred EecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECC-CCcEEEEE
Q 040444 275 CNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWK-RKKLKTVK 351 (409)
Q Consensus 275 ~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~-~~~~~~v~ 351 (409)
....+..+.||.+++.. ...|.... +.. . .....-+++.+ ++..|.....++.+..||.. .+.++.+.
T Consensus 233 s~s~D~~v~iw~~~~~~-~~~~~~~~-~~~--~---~~~v~~v~~sp--~g~~las~~~D~~v~lw~~~~~g~~~~~~ 301 (316)
T 3bg1_A 233 SCSQDGRVFIWTCDDAS-SNTWSPKL-LHK--F---NDVVWHVSWSI--TANILAVSGGDNKVTLWKESVDGQWVCIS 301 (316)
T ss_dssp EEETTCEEEEEECSSTT-CCCCBCCE-EEE--C---SSCEEEEEECT--TTCCEEEEESSSCEEEEEECTTSCEEEEE
T ss_pred EEcCCCeEEEEEccCcc-ccchhhhh-hhc--C---CCcEEEEEEcC--CCCEEEEEcCCCeEEEEEECCCCcEEEee
Confidence 33334599999987522 12343211 111 0 11244567777 77766666667779899876 45676664
No 123
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=39.68 E-value=1.7e+02 Score=24.47 Aligned_cols=190 Identities=14% Similarity=0.084 Sum_probs=85.5
Q ss_pred cccceEEE-ee-CCccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcce
Q 040444 94 SCNGLLAL-SN-SDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFV 171 (409)
Q Consensus 94 sc~GLl~l-~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~ 171 (409)
+.+|-+.+ .+ ....+.++|+.++....++..... ...++.+|+.. . +.... .
T Consensus 32 ~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~----------~p~~i~~~~~g-~--l~v~~-~------------ 85 (270)
T 1rwi_B 32 DSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLY----------QPQGLAVDGAG-T--VYVTD-F------------ 85 (270)
T ss_dssp CTTCCEEEEECSSSCEEEEECC-----EECCCCSCC----------SCCCEEECTTC-C--EEEEE-T------------
T ss_pred CCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcC----------CcceeEECCCC-C--EEEEc-C------------
Confidence 34666655 43 456788999988776665432211 12345666542 2 22221 1
Q ss_pred ecEEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEE--CCeEEEEeecCCCCCCccEEEEEECCCcceeeec
Q 040444 172 EYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYV--NGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLP 249 (409)
Q Consensus 172 ~~~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~ 249 (409)
...+.+|+..++.-....... . ....++.+ +|.+|+..... ..|..+|..+.......
T Consensus 86 ~~~i~~~d~~~~~~~~~~~~~----------~----~~p~~i~~~~~g~l~v~~~~~------~~i~~~~~~~~~~~~~~ 145 (270)
T 1rwi_B 86 NNRVVTLAAGSNNQTVLPFDG----------L----NYPEGLAVDTQGAVYVADRGN------NRVVKLAAGSKTQTVLP 145 (270)
T ss_dssp TTEEEEECTTCSCCEECCCCS----------C----SSEEEEEECTTCCEEEEEGGG------TEEEEECTTCCSCEECC
T ss_pred CCEEEEEeCCCceEeeeecCC----------c----CCCcceEECCCCCEEEEECCC------CEEEEEECCCceeEeec
Confidence 125667776665433332111 0 01112322 57776654332 24888887665443221
Q ss_pred CCCCCCCCCCceEEEEEe-CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEE
Q 040444 250 QPNYGAREKDFVLDVGAL-EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKV 328 (409)
Q Consensus 250 lP~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~i 328 (409)
.. .. .... .+... +|.|++..... ..+.+|-.+. .... . .... ......-+++.+ +| .+
T Consensus 146 ~~--~~-~~p~--~i~~~~~g~l~v~~~~~-~~i~~~~~~~---~~~~---~-~~~~----~~~~p~~i~~d~--~g-~l 205 (270)
T 1rwi_B 146 FT--GL-NDPD--GVAVDNSGNVYVTDTDN-NRVVKLEAES---NNQV---V-LPFT----DITAPWGIAVDE--AG-TV 205 (270)
T ss_dssp CC--SC-CSCC--CEEECTTCCEEEEEGGG-TEEEEECTTT---CCEE---E-CCCS----SCCSEEEEEECT--TC-CE
T ss_pred cc--cC-CCce--eEEEeCCCCEEEEECCC-CEEEEEecCC---CceE---e-eccc----CCCCceEEEECC--CC-CE
Confidence 11 11 1111 23333 67777665433 2555554321 1111 1 1111 111122344444 54 56
Q ss_pred EEEEc-CcEEEEEECCCCcEEE
Q 040444 329 LLEVN-GEKLVWYDWKRKKLKT 349 (409)
Q Consensus 329 ll~~~-~~~l~~yd~~~~~~~~ 349 (409)
++... ...|..||+.++....
T Consensus 206 ~v~~~~~~~v~~~~~~~~~~~~ 227 (270)
T 1rwi_B 206 YVTEHNTNQVVKLLAGSTTSTV 227 (270)
T ss_dssp EEEETTTSCEEEECTTCSCCEE
T ss_pred EEEECCCCcEEEEcCCCCccee
Confidence 66653 4569999998876544
No 124
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=38.53 E-value=2.7e+02 Score=26.55 Aligned_cols=201 Identities=9% Similarity=-0.086 Sum_probs=0.0
Q ss_pred cccceEEEeeCCccEEEEccccc----ceeccCCCCCCCCCCCCCCCee-EEEEeeec--CCCCEEEEEEEEeecCCCCC
Q 040444 94 SCNGLLALSNSDQDIALFNPATR----QLFKLPVEYIDLPDKSCIRGFV-FYGFGHDL--VSDDYKVVRMVQFKKDEDDN 166 (409)
Q Consensus 94 sc~GLl~l~~~~~~~~V~NP~T~----~~~~LP~~~~~~~~~~~~~~~~-~~~~g~d~--~~~~ykVv~~~~~~~~~~~~ 166 (409)
+-+|-.+....++.+.|||..++ +....-... ... ...+.+.| ... .+.......
T Consensus 27 spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h----------~~~~v~~~~~sp~~~~~---~l~s~~~dg----- 88 (615)
T 1pgu_A 27 DPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGH----------GSSVVTTVKFSPIKGSQ---YLCSGDESG----- 88 (615)
T ss_dssp ETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTT----------TTSCEEEEEECSSTTCC---EEEEEETTS-----
T ss_pred CCCCCEEEEecCCeEEEEECCCCCCccccceEEecC----------CCceEEEEEECcCCCCC---EEEEecCCC-----
Q ss_pred CCcceecEEEEEEcCCC------ceEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEEC
Q 040444 167 LGCFVEYEVKVFSLKNR------SWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDL 240 (409)
Q Consensus 167 ~~~~~~~~~~vyss~t~------~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl 240 (409)
.+.||+..++ ..+....+. .+......-...-+|..-.....+.. ....|..+|
T Consensus 89 -------~v~vw~~~~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~s~~~~~l~~~~~~~~--~~~~v~~~d- 148 (615)
T 1pgu_A 89 -------KVIVWGWTFDKESNSVEVNVKSEFQ----------VLAGPISDISWDFEGRRLCVVGEGRD--NFGVFISWD- 148 (615)
T ss_dssp -------EEEEEEEEEEGGGTEEEEEEEEEEE----------CCSSCEEEEEECTTSSEEEEEECCSS--CSEEEEETT-
T ss_pred -------EEEEEeCCCCcccccccccccchhh----------cccccEEEEEEeCCCCEEEEeccCCC--CccEEEEEE-
Q ss_pred CCcceeeecCCCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccc---cCCcceeeeE
Q 040444 241 GLEEFRLLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRS---ISSFRFLRPL 317 (409)
Q Consensus 241 ~~e~~~~i~lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~---~~~~~~~~p~ 317 (409)
..+....+.... .....--..-+|...++.......+.||-++. ......+..... . ..-+
T Consensus 149 ~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~------~~~~~~~~~~~~~~~~-----v~~~ 212 (615)
T 1pgu_A 149 SGNSLGEVSGHS-----QRINACHLKQSRPMRSMTVGDDGSVVFYQGPP------FKFSASDRTHHKQGSF-----VRDV 212 (615)
T ss_dssp TCCEEEECCSCS-----SCEEEEEECSSSSCEEEEEETTTEEEEEETTT------BEEEEEECSSSCTTCC-----EEEE
T ss_pred CCCcceeeecCC-----ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC------cceeeeecccCCCCce-----EEEE
Q ss_pred EEEeecC-CCEEEEEEcCcEEEEEECCCCcEEEE
Q 040444 318 ICSNEDG-GDKVLLEVNGEKLVWYDWKRKKLKTV 350 (409)
Q Consensus 318 ~~~~~~~-~~~ill~~~~~~l~~yd~~~~~~~~v 350 (409)
.+.+ + +..++....++.+..||+++++....
T Consensus 213 ~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 244 (615)
T 1pgu_A 213 EFSP--DSGEFVITVGSDRKISCFDGKSGEFLKY 244 (615)
T ss_dssp EECS--TTCCEEEEEETTCCEEEEETTTCCEEEE
T ss_pred EECC--CCCCEEEEEeCCCeEEEEECCCCCEeEE
No 125
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=38.47 E-value=2.2e+02 Score=25.60 Aligned_cols=95 Identities=17% Similarity=0.162 Sum_probs=47.2
Q ss_pred EEEEECCCcceee-ecCCCCCCCCCCceEEEEEe-CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcc
Q 040444 235 IVAFDLGLEEFRL-LPQPNYGAREKDFVLDVGAL-EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFR 312 (409)
Q Consensus 235 Il~fDl~~e~~~~-i~lP~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~ 312 (409)
|..+|+.+.+... +.... . .... ..+.-. +|.+.++...+ ..+.||-++.. .....+..... + .
T Consensus 156 i~iwd~~~~~~~~~~~~~~--~-~~~v-~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~------~~~~~~~~~~~-~--~ 221 (402)
T 2aq5_A 156 ILVWDVGTGAAVLTLGPDV--H-PDTI-YSVDWSRDGALICTSCRD-KRVRVIEPRKG------TVVAEKDRPHE-G--T 221 (402)
T ss_dssp EEEEETTTTEEEEEECTTT--C-CSCE-EEEEECTTSSCEEEEETT-SEEEEEETTTT------EEEEEEECSSC-S--S
T ss_pred EEEEECCCCCccEEEecCC--C-CCce-EEEEECCCCCEEEEEecC-CcEEEEeCCCC------ceeeeeccCCC-C--C
Confidence 8889998765433 32111 1 1111 123322 56655555443 48999987641 23333321110 0 0
Q ss_pred eeeeEEEEeecCCCEEEEEE----cCcEEEEEECCCCc
Q 040444 313 FLRPLICSNEDGGDKVLLEV----NGEKLVWYDWKRKK 346 (409)
Q Consensus 313 ~~~p~~~~~~~~~~~ill~~----~~~~l~~yd~~~~~ 346 (409)
...-+.+.+ ++. ++... .++.+..||+++..
T Consensus 222 ~~~~~~~~~--~~~-~l~~g~~~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 222 RPVHAVFVS--EGK-ILTTGFSRMSERQVALWDTKHLE 256 (402)
T ss_dssp SCCEEEECS--TTE-EEEEEECTTCCEEEEEEETTBCS
T ss_pred cceEEEEcC--CCc-EEEEeccCCCCceEEEEcCcccc
Confidence 122345555 544 44433 45679999998754
No 126
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=37.96 E-value=2.1e+02 Score=25.23 Aligned_cols=100 Identities=9% Similarity=0.120 Sum_probs=51.8
Q ss_pred EEEEECCCcceeee-cCCCCCCCCCCceEEEEEe-CCeEEEEEecCCCeEEEEEEeecCC---------CCceeEEEEee
Q 040444 235 IVAFDLGLEEFRLL-PQPNYGAREKDFVLDVGAL-EGHMCLMCNYDLVKVDVWMMKEYGL---------KESWSKMFSID 303 (409)
Q Consensus 235 Il~fDl~~e~~~~i-~lP~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~~IW~l~~~~~---------~~~W~~~~~I~ 303 (409)
|..+|+.+.++..+ .+.. . ...-..+.-. +|.+.+.... +..+.||.+...+. ...|.....+.
T Consensus 174 i~~w~~~~~~~~~~~~~~~--h--~~~v~~l~~sp~g~~l~s~s~-D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (345)
T 3fm0_A 174 VKLYREEEDDWVCCATLEG--H--ESTVWSLAFDPSGQRLASCSD-DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS 248 (345)
T ss_dssp EEEEEEETTEEEEEEEECC--C--SSCEEEEEECTTSSEEEEEET-TSCEEEEEEECTTCTTCCCCC---CEEEEEEEEC
T ss_pred EEEEEecCCCEEEEEEecC--C--CCceEEEEECCCCCEEEEEeC-CCeEEEeccccCCCCccceeeccCCccceeEEec
Confidence 77788777655432 2222 1 1111123322 5655444443 44999998643221 13465555443
Q ss_pred cccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCC
Q 040444 304 RCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRK 345 (409)
Q Consensus 304 ~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~ 345 (409)
-.. .....-+++.+ +++.+.....+..+..||.+++
T Consensus 249 ~~h----~~~v~~v~~~~--~~~~l~s~~~d~~i~vw~~~~~ 284 (345)
T 3fm0_A 249 GFH----SRTIYDIAWCQ--LTGALATACGDDAIRVFQEDPN 284 (345)
T ss_dssp SSC----SSCEEEEEECT--TTCCEEEEETTSCEEEEEECTT
T ss_pred CCC----CCcEEEEEEec--CCCEEEEEeCCCeEEEEEeCCC
Confidence 211 11244566666 6676666666667888877654
No 127
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=37.25 E-value=2.2e+02 Score=25.25 Aligned_cols=104 Identities=12% Similarity=0.145 Sum_probs=53.1
Q ss_pred EEEEEECCCcce-eeecCCCCCC-------CCCCceEEEEEe-CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeec
Q 040444 234 LIVAFDLGLEEF-RLLPQPNYGA-------REKDFVLDVGAL-EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDR 304 (409)
Q Consensus 234 ~Il~fDl~~e~~-~~i~lP~~~~-------~~~~~~~~L~~~-~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~ 304 (409)
.|..+|+.+.+. ..+..|.... .....-..+.-. +|.+.++... ...+.||-++. ......+..
T Consensus 259 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~------~~~~~~~~~ 331 (397)
T 1sq9_A 259 CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW-DGKLRFWDVKT------KERITTLNM 331 (397)
T ss_dssp EEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET-TSEEEEEETTT------TEEEEEEEC
T ss_pred eEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC-CCeEEEEEcCC------CceeEEEec
Confidence 589999886543 3344432000 011111123332 5665444443 44899998764 244455542
Q ss_pred cccc-CC---------------cceeeeEEEEeecCC----------CEEEEEEcCcEEEEEECCCCc
Q 040444 305 CRSI-SS---------------FRFLRPLICSNEDGG----------DKVLLEVNGEKLVWYDWKRKK 346 (409)
Q Consensus 305 ~~~~-~~---------------~~~~~p~~~~~~~~~----------~~ill~~~~~~l~~yd~~~~~ 346 (409)
.... .. .....-+.+.+ ++ ..|+....++.+..||+++++
T Consensus 332 ~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~--~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 332 HCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK--KGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp CGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEEC--TTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ccCcccchhhhhccccccccccCCceeEEEecc--ccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 1000 00 12344567777 65 466666667889999998763
No 128
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=36.76 E-value=3.3e+02 Score=27.15 Aligned_cols=120 Identities=14% Similarity=0.057 Sum_probs=59.8
Q ss_pred cceEEECCeEEEEeecCCCCCCccEEEEEECCCc--ceeee-cCCCCCCC----CCCceEEEEEeCCeEEEEEecCCCeE
Q 040444 210 GYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLE--EFRLL-PQPNYGAR----EKDFVLDVGALEGHMCLMCNYDLVKV 282 (409)
Q Consensus 210 ~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e--~~~~i-~lP~~~~~----~~~~~~~L~~~~G~L~~~~~~~~~~~ 282 (409)
..++..+|.+|...... .|.++|..+. .|+.- ..+. ... .......+...+|++++.... .
T Consensus 60 ~~P~v~~g~vyv~~~~~-------~v~AlD~~tG~~~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~v~~~d--g-- 127 (668)
T 1kv9_A 60 ATPLFHDGVIYTSMSWS-------RVIAVDAASGKELWRYDPEVAK-VKARTSCCDAVNRGVALWGDKVYVGTLD--G-- 127 (668)
T ss_dssp CCCEEETTEEEEEEGGG-------EEEEEETTTCCEEEEECCCCCG-GGGGGCTTCSCCCCCEEEBTEEEEECTT--S--
T ss_pred cCCEEECCEEEEECCCC-------eEEEEECCCChhceEECCCCCc-cccccccccCCccceEEECCEEEEEcCC--C--
Confidence 45578899999876543 4999998754 46541 2221 000 000011234456776654322 1
Q ss_pred EEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEc------CcEEEEEECCCCcEEE
Q 040444 283 DVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVN------GEKLVWYDWKRKKLKT 349 (409)
Q Consensus 283 ~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~------~~~l~~yd~~~~~~~~ 349 (409)
.|..++-...+..|..... +.. . .......|+.. + +.|++... +..|+.+|.+|++...
T Consensus 128 ~l~alD~~tG~~~W~~~~~-~~~-~-~~~~~~~P~v~----~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 192 (668)
T 1kv9_A 128 RLIALDAKTGKAIWSQQTT-DPA-K-PYSITGAPRVV----K-GKVIIGNGGAEYGVRGFVSAYDADTGKLAW 192 (668)
T ss_dssp EEEEEETTTCCEEEEEECS-CTT-S-SCBCCSCCEEE----T-TEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred EEEEEECCCCCEeeeeccC-CCC-C-cceecCCCEEE----C-CEEEEeCCCCCcCCCCEEEEEECCCCcEEE
Confidence 2444442222456765321 100 0 00011234332 3 56766543 2579999999998765
No 129
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=36.34 E-value=2.6e+02 Score=25.73 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=16.8
Q ss_pred EECCeEEEEeecCCCCCCccEEEEEECCCc
Q 040444 214 YVNGVVHWVSPRRPEFGIGNLIVAFDLGLE 243 (409)
Q Consensus 214 ~~~G~lywl~~~~~~~~~~~~Il~fDl~~e 243 (409)
..+|.+||...... .|..+|..+.
T Consensus 298 v~~~~lywtd~~~~------~V~~~~~~~G 321 (400)
T 3p5b_L 298 VFEDKVFWTDIINE------AIFSANRLTG 321 (400)
T ss_dssp EETTEEEEEESSSC------SEEEEESSSC
T ss_pred EeCCEEEEecCCCC------eEEEEEcCCC
Confidence 36789999875543 3999995443
No 130
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=35.90 E-value=3.6e+02 Score=27.27 Aligned_cols=152 Identities=9% Similarity=0.105 Sum_probs=71.9
Q ss_pred EEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEEC-CeEEEEeecCCCCCCccEEEEEECCCcceeeecCCC
Q 040444 174 EVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVN-GVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPN 252 (409)
Q Consensus 174 ~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~-G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~ 252 (409)
.+..|+..++.++.....+... ..+....-.+++.+ .--.|+.... + |..+|..+.+|..+...+
T Consensus 236 Gl~~~~~~~~~~~~~~~~~~~~-------~~l~~~~i~~i~~d~~g~lWigt~~-G------l~~~~~~~~~~~~~~~~~ 301 (795)
T 4a2l_A 236 GLFLINPKTKEIKNYLHSPSNP-------KSISSNYIRSLAMDSQNRLWIGTFN-D------LNIYHEGTDSFASYSSNP 301 (795)
T ss_dssp CEEEEETTTTEEEEECCCTTCT-------TSCSCSBEEEEEECTTSCEEEEESS-C------EEEEETTTTEEEEECCCT
T ss_pred CeEEEeCCCCeEEEeecCCCCc-------cccCCCeEEEEEEcCCCCEEEEeCC-h------hheEcCCCCeEEEEecCC
Confidence 4567787777776653211000 00000111223332 2346777654 3 899999999998764332
Q ss_pred C---CCCCCCceEEEEE-eCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEE
Q 040444 253 Y---GAREKDFVLDVGA-LEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKV 328 (409)
Q Consensus 253 ~---~~~~~~~~~~L~~-~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~i 328 (409)
. ........ .+.+ .+|.|.+....+ .+..+-.+ ...+......... .....-...++... ..+.|
T Consensus 302 ~~~~~l~~~~i~-~i~~D~~g~lWigt~~~--Gl~~~~~~----~~~~~~~~~~~~~---~~l~~~~V~~i~~d-~~g~l 370 (795)
T 4a2l_A 302 VENGSLSQRSVR-SIFMDSQGGMWLGTYFG--GLNYYHPI----RNRFKNIRNIPYK---NSLSDNVVSCIVED-KDKNL 370 (795)
T ss_dssp TSTTSCSSSCEE-EEEECTTSCEEEEESSS--CEEEECGG----GGSSEEECCCTTS---SSCSCSSEEEEEEC-TTSCE
T ss_pred CCCCCCCCCcEE-EEEEeCCcCEEEEECCC--CeEEeCCC----cccceEEcCCCCC---CCCCCCeeEEEEEC-CCCCE
Confidence 0 11111222 3333 356666654322 33333211 1223322111110 01111112233331 33568
Q ss_pred EEEEcCcEEEEEECCCCcEEEE
Q 040444 329 LLEVNGEKLVWYDWKRKKLKTV 350 (409)
Q Consensus 329 ll~~~~~~l~~yd~~~~~~~~v 350 (409)
.+.+.++.|..||.++++++.+
T Consensus 371 WiGt~~~Gl~~~~~~~~~~~~~ 392 (795)
T 4a2l_A 371 WIGTNDGGLNLYNPITQRFTSY 392 (795)
T ss_dssp EEEESSSCEEEECTTTCCEEEE
T ss_pred EEEECCCCeEEEcCCCCcEEEE
Confidence 8888776699999999888765
No 131
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=35.37 E-value=2.6e+02 Score=25.50 Aligned_cols=211 Identities=10% Similarity=-0.022 Sum_probs=101.5
Q ss_pred cccceEEEee-CCccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCccee
Q 040444 94 SCNGLLALSN-SDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVE 172 (409)
Q Consensus 94 sc~GLl~l~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~ 172 (409)
..+|.|...+ ....++.+++.++....+-..... ...|+.+|+..+. +.+... ..
T Consensus 125 ~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~----------~p~glavd~~~g~--lY~~d~------------~~ 180 (386)
T 3v65_B 125 HRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE----------SPGGLAVDWVHDK--LYWTDS------------GT 180 (386)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCS----------CCCCEEEETTTTE--EEEEET------------TT
T ss_pred cCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCC----------CccEEEEEeCCCe--EEEEcC------------CC
Confidence 3567776665 345778888877765444322211 1245667765443 222210 12
Q ss_pred cEEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEE---CCeEEEEeecCCCCCCccEEEEEECCCcceeeec
Q 040444 173 YEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYV---NGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLP 249 (409)
Q Consensus 173 ~~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~ 249 (409)
..+++++.....-+.+.... + ....++.+ +|.+||..... ...|..+|+....-..+-
T Consensus 181 ~~I~~~~~dg~~~~~l~~~~------------l--~~P~giavdp~~g~ly~td~~~-----~~~I~r~~~dG~~~~~~~ 241 (386)
T 3v65_B 181 SRIEVANLDGAHRKVLLWQS------------L--EKPRAIALHPMEGTIYWTDWGN-----TPRIEASSMDGSGRRIIA 241 (386)
T ss_dssp TEEEECBTTSCSCEEEECSS------------C--SCEEEEEEETTTTEEEEEECSS-----SCEEEEEETTSCSCEEEE
T ss_pred CeEEEEeCCCCceEEeecCC------------C--CCCcEEEEEcCCCeEEEeccCC-----CCEEEEEeCCCCCcEEEE
Confidence 25556665443322221100 0 11122333 58999986543 136999999865443332
Q ss_pred CCCCCCCCCCceEEEEE--eCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCE
Q 040444 250 QPNYGAREKDFVLDVGA--LEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDK 327 (409)
Q Consensus 250 lP~~~~~~~~~~~~L~~--~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ 327 (409)
.. .. . ..-.|.. .+|.|+++..... .|++.+-.|. .. ...+.. . ...|.++.- .++.
T Consensus 242 ~~--~~-~--~PnGlavd~~~~~lY~aD~~~~---~I~~~d~dG~-~~---~~~~~~-~------~~~P~giav--~~~~ 300 (386)
T 3v65_B 242 DT--HL-F--WPNGLTIDYAGRRMYWVDAKHH---VIERANLDGS-HR---KAVISQ-G------LPHPFAITV--FEDS 300 (386)
T ss_dssp CS--SC-S--CEEEEEEEGGGTEEEEEETTTT---EEEEECTTSC-SC---EEEECS-S------CSSEEEEEE--ETTE
T ss_pred EC--CC-C--CeeeEEEeCCCCEEEEEECCCC---EEEEEeCCCC-ee---EEEEEC-C------CCCceEEEE--ECCE
Confidence 11 11 1 1113444 4788888875432 4566553332 11 111111 1 134656554 3466
Q ss_pred EEEEEc-CcEEEEEECCCC-cEEEEEEeCCCCceeEeEEEeccc
Q 040444 328 VLLEVN-GEKLVWYDWKRK-KLKTVKIDGGPDSFVACICVESLI 369 (409)
Q Consensus 328 ill~~~-~~~l~~yd~~~~-~~~~v~~~~~~~~~~~~~y~eSlv 369 (409)
|++... ...|..+|..++ ..+.+.. +...-....+|.++.-
T Consensus 301 ly~td~~~~~V~~~~~~~G~~~~~i~~-~~~~p~gi~v~~~~~q 343 (386)
T 3v65_B 301 LYWTDWHTKSINSANKFTGKNQEIIRN-KLHFPMDIHTLHPQRQ 343 (386)
T ss_dssp EEEEETTTTEEEEEETTTCCSCEEEEC-SCSCCCCEEEESGGGS
T ss_pred EEEeeCCCCeEEEEECCCCcceEEEcc-CCCCCceEEEEchhcC
Confidence 776643 456999995444 4455532 2222233445555443
No 132
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=34.71 E-value=2.1e+02 Score=24.34 Aligned_cols=105 Identities=14% Similarity=0.069 Sum_probs=54.3
Q ss_pred CCeEEEEeecCCCCCCccEEEEEECC-Ccce----eeecCCCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEEEeec
Q 040444 216 NGVVHWVSPRRPEFGIGNLIVAFDLG-LEEF----RLLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEY 290 (409)
Q Consensus 216 ~G~lywl~~~~~~~~~~~~Il~fDl~-~e~~----~~i~lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~ 290 (409)
+|.++ .+.... ..|..||+. +.++ ..+.... .. ... -...-+|.|.+.. ...+.+|-.+
T Consensus 182 dg~~l-v~~~~~-----~~i~~~~~~~~g~~~~~~~~~~~~~-~~-p~~---i~~d~~G~l~v~~---~~~v~~~~~~-- 245 (296)
T 3e5z_A 182 SGNLL-VSDTGD-----NATHRYCLNARGETEYQGVHFTVEP-GK-TDG---LRVDAGGLIWASA---GDGVHVLTPD-- 245 (296)
T ss_dssp TSCEE-EEETTT-----TEEEEEEECSSSCEEEEEEEECCSS-SC-CCS---EEEBTTSCEEEEE---TTEEEEECTT--
T ss_pred CCCEE-EEeCCC-----CeEEEEEECCCCcCcCCCeEeeCCC-CC-CCe---EEECCCCCEEEEc---CCeEEEECCC--
Confidence 57666 433322 258999986 4444 1221111 11 111 1223478887776 2366665432
Q ss_pred CCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcEEE
Q 040444 291 GLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKLKT 349 (409)
Q Consensus 291 ~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~~~ 349 (409)
+ . ....+..... ..-+++.. ++++.|++...+ .++.++++++++++
T Consensus 246 g---~--~~~~~~~~~~------~~~~~f~~-~d~~~L~v~t~~-~l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 246 G---D--ELGRVLTPQT------TSNLCFGG-PEGRTLYMTVST-EFWSIETNVRGLEH 291 (296)
T ss_dssp S---C--EEEEEECSSC------CCEEEEES-TTSCEEEEEETT-EEEEEECSCCBCCC
T ss_pred C---C--EEEEEECCCC------ceeEEEEC-CCCCEEEEEcCC-eEEEEEcccccccc
Confidence 2 1 2333433211 12234421 266778887654 69999999998765
No 133
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=34.52 E-value=2.5e+02 Score=25.00 Aligned_cols=94 Identities=11% Similarity=-0.045 Sum_probs=44.9
Q ss_pred EEEEEECCCccee-eecCCCCCCCCCCceEEEEEe-CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCc
Q 040444 234 LIVAFDLGLEEFR-LLPQPNYGAREKDFVLDVGAL-EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSF 311 (409)
Q Consensus 234 ~Il~fDl~~e~~~-~i~lP~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~ 311 (409)
.|..+|+.+.+.. .+.... ... ..+.-. +|.-.++....+..+.||-++. . +..... . ..
T Consensus 238 ~v~~wd~~~~~~~~~~~~h~-----~~v-~~v~fsp~g~~~lasgs~D~~i~vwd~~~----~---~~~~~~--~---H~ 299 (344)
T 4gqb_B 238 TVSLVDTKSTSCVLSSAVHS-----QCV-TGLVFSPHSVPFLASLSEDCSLAVLDSSL----S---ELFRSQ--A---HR 299 (344)
T ss_dssp EEEEEESCC--CCEEEECCS-----SCE-EEEEECSSSSCCEEEEETTSCEEEECTTC----C---EEEEEC--C---CS
T ss_pred cEEEEECCCCcEEEEEcCCC-----CCE-EEEEEccCCCeEEEEEeCCCeEEEEECCC----C---cEEEEc--C---CC
Confidence 4788898765432 222211 111 123322 4432233333345899995442 1 122211 1 11
Q ss_pred ceeeeEEEEeecCCCEEEEE-EcCcEEEEEECCCCcE
Q 040444 312 RFLRPLICSNEDGGDKVLLE-VNGEKLVWYDWKRKKL 347 (409)
Q Consensus 312 ~~~~p~~~~~~~~~~~ill~-~~~~~l~~yd~~~~~~ 347 (409)
..+.-+++.+ ++..++.. ..++.+..|++.++.+
T Consensus 300 ~~V~~v~~sp--~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 300 DFVRDATWSP--LNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp SCEEEEEECS--SSTTEEEEEETTSCEEEEECCC---
T ss_pred CCEEEEEEeC--CCCeEEEEEcCCCeEEEEECCCCCC
Confidence 2345577777 66555543 4567799999988764
No 134
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=34.16 E-value=91 Score=23.66 Aligned_cols=40 Identities=13% Similarity=0.207 Sum_probs=28.4
Q ss_pred ccEEEEccccc-ceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEE
Q 040444 106 QDIALFNPATR-QLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMV 157 (409)
Q Consensus 106 ~~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~ 157 (409)
-.+++.||.|+ .|...-. ......+-+|+..+.|+|+.+.
T Consensus 11 A~V~~~D~~tk~~W~p~g~------------~~~~V~~~~d~~~~~yRIv~~~ 51 (120)
T 1ddw_A 11 AHVFQIDPNTKKNWVPTSK------------HAVTVSYFYDSTRNVYRIISLD 51 (120)
T ss_dssp EEEEEECTTTSCSEEESCS------------SCEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEcCCCCCceEeCCC------------CceEEEEEEcCCCCEEEEEEcc
Confidence 36889999996 8854322 2235667789888889998854
No 135
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=33.88 E-value=2.2e+02 Score=24.09 Aligned_cols=203 Identities=11% Similarity=0.076 Sum_probs=98.2
Q ss_pred cccceEEEee-CCccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCccee
Q 040444 94 SCNGLLALSN-SDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVE 172 (409)
Q Consensus 94 sc~GLl~l~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~ 172 (409)
+.+|-+.+.+ ....+.++||..+....++....... ......++.+++..+. ++... .. ..
T Consensus 38 ~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~-----~~~~p~~i~~~~~~g~--l~v~~-~~----------~~ 99 (286)
T 1q7f_A 38 NAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDS-----QLLYPNRVAVVRNSGD--IIVTE-RS----------PT 99 (286)
T ss_dssp CTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTT-----CBSSEEEEEEETTTTE--EEEEE-CG----------GG
T ss_pred CCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcc-----cccCceEEEEEcCCCe--EEEEc-CC----------CC
Confidence 3456665554 34578999998666556654221100 1223456666533332 22221 10 12
Q ss_pred cEEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEE--ECCeEEEEeecCCCCCCccEEEEEECCCcceeeecC
Q 040444 173 YEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVY--VNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQ 250 (409)
Q Consensus 173 ~~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~--~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~l 250 (409)
..+.+|+.....-+.+.... . ....++. -+|.+|...... ..|..||...+....+..
T Consensus 100 ~~i~~~d~~g~~~~~~~~~~----------~----~~~~~i~~~~~g~l~v~~~~~------~~i~~~~~~g~~~~~~~~ 159 (286)
T 1q7f_A 100 HQIQIYNQYGQFVRKFGATI----------L----QHPRGVTVDNKGRIIVVECKV------MRVIIFDQNGNVLHKFGC 159 (286)
T ss_dssp CEEEEECTTSCEEEEECTTT----------C----SCEEEEEECTTSCEEEEETTT------TEEEEECTTSCEEEEEEC
T ss_pred CEEEEECCCCcEEEEecCcc----------C----CCceEEEEeCCCCEEEEECCC------CEEEEEcCCCCEEEEeCC
Confidence 35677774333223332111 0 0111232 257766543322 259999987766665544
Q ss_pred CCCCCCCCCceEEEEEe-CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEE
Q 040444 251 PNYGAREKDFVLDVGAL-EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVL 329 (409)
Q Consensus 251 P~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~il 329 (409)
+. .. .. ...+... +|.|+++.... ..+.+|-.+ + . ....+.... ......-+++.+ +| .++
T Consensus 160 ~~-~~--~~-p~~i~~~~~g~l~v~~~~~-~~i~~~~~~--g---~--~~~~~~~~g---~~~~p~~i~~d~--~G-~l~ 221 (286)
T 1q7f_A 160 SK-HL--EF-PNGVVVNDKQEIFISDNRA-HCVKVFNYE--G---Q--YLRQIGGEG---ITNYPIGVGINS--NG-EIL 221 (286)
T ss_dssp TT-TC--SS-EEEEEECSSSEEEEEEGGG-TEEEEEETT--C---C--EEEEESCTT---TSCSEEEEEECT--TC-CEE
T ss_pred CC-cc--CC-cEEEEECCCCCEEEEECCC-CEEEEEcCC--C---C--EEEEEccCC---ccCCCcEEEECC--CC-CEE
Confidence 33 21 11 1234433 68877665443 377777532 1 1 222232211 111223345554 55 466
Q ss_pred EEEc-Cc-EEEEEECCCCcEEEEEE
Q 040444 330 LEVN-GE-KLVWYDWKRKKLKTVKI 352 (409)
Q Consensus 330 l~~~-~~-~l~~yd~~~~~~~~v~~ 352 (409)
+... .. .|..||.+.+.++.+..
T Consensus 222 v~~~~~~~~i~~~~~~g~~~~~~~~ 246 (286)
T 1q7f_A 222 IADNHNNFNLTIFTQDGQLISALES 246 (286)
T ss_dssp EEECSSSCEEEEECTTSCEEEEEEE
T ss_pred EEeCCCCEEEEEECCCCCEEEEEcc
Confidence 6553 33 79999988877776654
No 136
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=33.60 E-value=2.3e+02 Score=24.42 Aligned_cols=99 Identities=12% Similarity=0.088 Sum_probs=53.7
Q ss_pred EEEEECCCcceeeecCCCCCCCCCCceEEEEE-e-CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcc
Q 040444 235 IVAFDLGLEEFRLLPQPNYGAREKDFVLDVGA-L-EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFR 312 (409)
Q Consensus 235 Il~fDl~~e~~~~i~lP~~~~~~~~~~~~L~~-~-~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~ 312 (409)
++.+|+.+.+...+.....+ . ....+.. - +|+..++. ...+.+|-++. ......+....
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~------~~~~~~~~~~~------ 295 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLT---E-LYFTGLRSPKDPNQIYGV---LNRLAKYDLKQ------RKLIKAANLDH------ 295 (349)
T ss_dssp EEEEETTTCCEEEEEEEECS---S-CEEEEEECSSCTTEEEEE---ESEEEEEETTT------TEEEEEEECSS------
T ss_pred EEEEeccCCcEEecccccCC---C-cceeeEecCCCCCEEEEE---cCeEEEEECcc------CeEEEEEcCCC------
Confidence 45577777776665443211 1 1112222 2 45544444 34777776553 22333444321
Q ss_pred eeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcE-EEEEEeC
Q 040444 313 FLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKL-KTVKIDG 354 (409)
Q Consensus 313 ~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~-~~v~~~~ 354 (409)
...-+++.+ +|+.|++...+..+..||+++++. ..+...+
T Consensus 296 ~~~~~~~s~--dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~~ 336 (349)
T 1jmx_B 296 TYYCVAFDK--KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPG 336 (349)
T ss_dssp CCCEEEECS--SSSCEEEESBSSEEEEEETTTTEEEEEEECSS
T ss_pred CccceEECC--CCCEEEEecCCCeEEEEeccccceeeeeecCC
Confidence 123467777 777777765557799999998774 4555553
No 137
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=33.44 E-value=3.9e+02 Score=26.94 Aligned_cols=206 Identities=10% Similarity=0.059 Sum_probs=99.7
Q ss_pred ccceEEEeeCCccEEEEcccccceeccCCCCCC-CCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceec
Q 040444 95 CNGLLALSNSDQDIALFNPATRQLFKLPVEYID-LPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEY 173 (409)
Q Consensus 95 c~GLl~l~~~~~~~~V~NP~T~~~~~LP~~~~~-~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~ 173 (409)
.+|-|-+......+..++|.++.+..+...+.. .+... ......++..|... . ++++.. ..
T Consensus 322 ~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~v~~i~~d~~g-~---lWigt~------------~~ 383 (781)
T 3v9f_A 322 SFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSL--SNKVVSSVCDDGQG-K---LWIGTD------------GG 383 (781)
T ss_dssp SSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCC--SSSCEEEEEECTTS-C---EEEEEB------------SS
T ss_pred CCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCC--CCcceEEEEEcCCC-C---EEEEeC------------CC
Confidence 356665555456688889988887776532110 00000 12234455555432 1 333321 12
Q ss_pred EEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEE--CCeEEEEeecCCCCCCccEEEEEECCCcceeeecCC
Q 040444 174 EVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYV--NGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQP 251 (409)
Q Consensus 174 ~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP 251 (409)
.+..|+..++.++.... + .......-.+++. +|. -|+..... .|..||..+.++..+..+
T Consensus 384 Gl~~~~~~~~~~~~~~~-~----------~~~~~~~v~~i~~d~~g~-lWigt~~~------Gl~~~~~~~~~~~~~~~~ 445 (781)
T 3v9f_A 384 GINVFENGKRVAIYNKE-N----------RELLSNSVLCSLKDSEGN-LWFGTYLG------NISYYNTRLKKFQIIELE 445 (781)
T ss_dssp CEEEEETTEEEEECC----------------CCCSBEEEEEECTTSC-EEEEETTE------EEEEECSSSCEEEECCST
T ss_pred cEEEEECCCCeEEEccC-C----------CCCCCcceEEEEECCCCC-EEEEeccC------CEEEEcCCCCcEEEeccC
Confidence 35566766665554421 1 0000011122333 354 46665432 399999999999877543
Q ss_pred CCCCCCCCceEEEEEe-CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEE
Q 040444 252 NYGAREKDFVLDVGAL-EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLL 330 (409)
Q Consensus 252 ~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill 330 (409)
. ...... ..+.+. +|.|.+... .. |+.++.. ...|........... ......-+... ..+.|.+
T Consensus 446 ~--~~~~~v-~~i~~d~~g~lwigt~---~G--l~~~~~~--~~~~~~~~~~~~~~~--~~~~i~~i~~d---~~g~lWi 510 (781)
T 3v9f_A 446 K--NELLDV-RVFYEDKNKKIWIGTH---AG--VFVIDLA--SKKVIHHYDTSNSQL--LENFVRSIAQD---SEGRFWI 510 (781)
T ss_dssp T--TCCCCE-EEEEECTTSEEEEEET---TE--EEEEESS--SSSCCEEECTTTSSC--SCSCEEEEEEC---TTCCEEE
T ss_pred C--CCCCeE-EEEEECCCCCEEEEEC---Cc--eEEEeCC--CCeEEecccCccccc--ccceeEEEEEc---CCCCEEE
Confidence 1 101112 234444 678777653 23 4444432 244655432210000 01122223322 3466888
Q ss_pred EEcCcEEEEEECCCCcEEEEE
Q 040444 331 EVNGEKLVWYDWKRKKLKTVK 351 (409)
Q Consensus 331 ~~~~~~l~~yd~~~~~~~~v~ 351 (409)
.+.+..|+.||+++++++.+.
T Consensus 511 gt~~~Gl~~~~~~~~~~~~~~ 531 (781)
T 3v9f_A 511 GTFGGGVGIYTPDMQLVRKFN 531 (781)
T ss_dssp EESSSCEEEECTTCCEEEEEC
T ss_pred EEcCCCEEEEeCCCCeEEEcc
Confidence 886556999999999887653
No 138
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=33.33 E-value=2.5e+02 Score=24.63 Aligned_cols=204 Identities=11% Similarity=0.065 Sum_probs=96.7
Q ss_pred EEEecccceEEEeeCCccEEEEccccccee-ccCCCCCCCCCCCCCCCeeEEEEeeecC-CCCEEEEEEEEeecCCCCCC
Q 040444 90 EVFGSCNGLLALSNSDQDIALFNPATRQLF-KLPVEYIDLPDKSCIRGFVFYGFGHDLV-SDDYKVVRMVQFKKDEDDNL 167 (409)
Q Consensus 90 ~~~~sc~GLl~l~~~~~~~~V~NP~T~~~~-~LP~~~~~~~~~~~~~~~~~~~~g~d~~-~~~ykVv~~~~~~~~~~~~~ 167 (409)
.+.++.+|-+.+.+....+.++|..+++.. .+.... ......+.++|. .+.|-+.. .
T Consensus 88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~~l~s~-s---------- 146 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDS----------ANEIIYMYGHNEVNTEYFIWA-D---------- 146 (343)
T ss_dssp EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCC----------SSCEEEEECCC---CCEEEEE-E----------
T ss_pred eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCC----------CCCEEEEEcCCCCCCCEEEEE-e----------
Confidence 455677888888877777888888887732 222111 122455666662 23332222 1
Q ss_pred CcceecEEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcceee
Q 040444 168 GCFVEYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRL 247 (409)
Q Consensus 168 ~~~~~~~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~ 247 (409)
..-.+.+|+..++.-......... ... ..-...-+|.+...+..+. .|..+|+.+.+...
T Consensus 147 ---~dg~i~~wd~~~~~~~~~~~~~~~--------~~i---~~~~~~pdg~~lasg~~dg------~i~iwd~~~~~~~~ 206 (343)
T 3lrv_A 147 ---NRGTIGFQSYEDDSQYIVHSAKSD--------VEY---SSGVLHKDSLLLALYSPDG------ILDVYNLSSPDQAS 206 (343)
T ss_dssp ---TTCCEEEEESSSSCEEEEECCCSS--------CCC---CEEEECTTSCEEEEECTTS------CEEEEESSCTTSCC
T ss_pred ---CCCcEEEEECCCCcEEEEEecCCC--------Cce---EEEEECCCCCEEEEEcCCC------EEEEEECCCCCCCc
Confidence 123577888877654322111100 000 0101112455443333332 38999998776431
Q ss_pred ecCCCCCCCCCCceEEEEEe-CCeEEEEEecCCCeEEEEEEeecCCCCceeEE--EEeecccccCCcceeeeEEEEeecC
Q 040444 248 LPQPNYGAREKDFVLDVGAL-EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKM--FSIDRCRSISSFRFLRPLICSNEDG 324 (409)
Q Consensus 248 i~lP~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~--~~I~~~~~~~~~~~~~p~~~~~~~~ 324 (409)
..+.. +. .... ..+.-. +|...+... +. .+.||-+............ +.+.. .. .-+++.+ +
T Consensus 207 ~~~~~-~h-~~~v-~~l~fs~~g~~l~s~~-~~-~v~iwd~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~--~ 271 (343)
T 3lrv_A 207 SRFPV-DE-EAKI-KEVKFADNGYWMVVEC-DQ-TVVCFDLRKDVGTLAYPTYTIPEFKT-------GT-VTYDIDD--S 271 (343)
T ss_dssp EECCC-CT-TSCE-EEEEECTTSSEEEEEE-SS-BEEEEETTSSTTCBSSCCCBC------------CC-EEEEECT--T
T ss_pred cEEec-cC-CCCE-EEEEEeCCCCEEEEEe-CC-eEEEEEcCCCCcceeecccccccccc-------cc-eEEEECC--C
Confidence 12221 11 1111 123322 555544444 34 9999988753211111000 00110 00 2366666 7
Q ss_pred CCEEEEEEc-CcEEEEEEC--CCCcEEE
Q 040444 325 GDKVLLEVN-GEKLVWYDW--KRKKLKT 349 (409)
Q Consensus 325 ~~~ill~~~-~~~l~~yd~--~~~~~~~ 349 (409)
|..++.... +..+..||. .++.|+.
T Consensus 272 g~~l~~~s~~d~~i~v~~~~~~~~~~~~ 299 (343)
T 3lrv_A 272 GKNMIAYSNESNSLTIYKFDKKTKNWTK 299 (343)
T ss_dssp SSEEEEEETTTTEEEEEEECTTTCSEEE
T ss_pred CCEEEEecCCCCcEEEEEEcccccceEe
Confidence 676665555 666888877 4445664
No 139
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=33.16 E-value=2.6e+02 Score=28.01 Aligned_cols=121 Identities=16% Similarity=0.090 Sum_probs=60.4
Q ss_pred cceEEECCeEEEEeecCCCCCCccEEEEEECCCc--ceeee-cCCCCCCC----CCCceEEEEEeCCeEEEEEecCCCeE
Q 040444 210 GYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLE--EFRLL-PQPNYGAR----EKDFVLDVGALEGHMCLMCNYDLVKV 282 (409)
Q Consensus 210 ~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e--~~~~i-~lP~~~~~----~~~~~~~L~~~~G~L~~~~~~~~~~~ 282 (409)
..++..+|.+|...... .|.++|..+. .|+.- ..+. ... .......+...+|+|++.... ..
T Consensus 64 ~~P~v~~g~vyv~~~~~-------~v~AlD~~tG~~~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~v~v~~~d--g~- 132 (689)
T 1yiq_A 64 ATPIVVDGVMYTTGPFS-------VVYALDARDGRLIWKYDPQSDR-HRAGEACCDAVNRGVAVWKGKVYVGVLD--GR- 132 (689)
T ss_dssp CCCEEETTEEEEECGGG-------CEEEEETTTCCEEEEECCCCCG-GGGGGCTTCSCCCCCEEETTEEEEECTT--SE-
T ss_pred ecCEEECCEEEEEcCCC-------eEEEEECCCCceeEEEcCCCCc-cccccccccCCCCccEEECCEEEEEccC--CE-
Confidence 44578899999876543 3999998754 46541 2221 000 000111234567776655422 12
Q ss_pred EEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEc------CcEEEEEECCCCcEEE
Q 040444 283 DVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVN------GEKLVWYDWKRKKLKT 349 (409)
Q Consensus 283 ~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~------~~~l~~yd~~~~~~~~ 349 (409)
|..++-...+..|......+.... ......|+.. + +.|++... +..|+.||.+|++...
T Consensus 133 -l~AlDa~TG~~~W~~~~~~~~~~~--~~~~~sP~v~----~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 197 (689)
T 1yiq_A 133 -LEAIDAKTGQRAWSVDTRADHKRS--YTITGAPRVV----N-GKVVIGNGGAEFGVRGYVTAYDAETGKEAW 197 (689)
T ss_dssp -EEEEETTTCCEEEEEECCSCTTSC--CBCCSCCEEE----T-TEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred -EEEEECCCCCEeeeecCcCCCCCC--ccccCCcEEE----C-CEEEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence 334442222456765432111100 0011234332 3 56666532 3569999999999654
No 140
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=32.63 E-value=2.9e+02 Score=25.24 Aligned_cols=101 Identities=9% Similarity=0.084 Sum_probs=50.6
Q ss_pred EEEEEECCCcc--eeeecCCCCCCCCCCceEEEEEe-CC-eEEEEEecCCCeEEEEEEeecCCCCc--------eeEEEE
Q 040444 234 LIVAFDLGLEE--FRLLPQPNYGAREKDFVLDVGAL-EG-HMCLMCNYDLVKVDVWMMKEYGLKES--------WSKMFS 301 (409)
Q Consensus 234 ~Il~fDl~~e~--~~~i~lP~~~~~~~~~~~~L~~~-~G-~L~~~~~~~~~~~~IW~l~~~~~~~~--------W~~~~~ 301 (409)
.|..+|+.+.. ...+.... ..-..+.-. +| .+.+.... ...+.||-+...+.... -.....
T Consensus 301 ~v~vwd~~~~~~~~~~~~~h~------~~v~~i~~sp~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 373 (430)
T 2xyi_A 301 TVALWDLRNLKLKLHSFESHK------DEIFQVQWSPHNETILASSGT-DRRLHVWDLSKIGEEQSTEDAEDGPPELLFI 373 (430)
T ss_dssp EEEEEETTCTTSCSEEEECCS------SCEEEEEECSSCTTEEEEEET-TSCCEEEEGGGTTCCCCHHHHHHCCTTEEEE
T ss_pred eEEEEeCCCCCCCeEEeecCC------CCEEEEEECCCCCCEEEEEeC-CCcEEEEeCCCCccccCccccccCCcceEEE
Confidence 48999988632 22222111 111122222 34 44444444 34899999876331100 122222
Q ss_pred eecccccCCcceeeeEEEEeecCCC-EEEEEEcCcEEEEEECCCCcEE
Q 040444 302 IDRCRSISSFRFLRPLICSNEDGGD-KVLLEVNGEKLVWYDWKRKKLK 348 (409)
Q Consensus 302 I~~~~~~~~~~~~~p~~~~~~~~~~-~ill~~~~~~l~~yd~~~~~~~ 348 (409)
..- ......-+.+.+ ++. .++....++.|..|++.++.+.
T Consensus 374 ~~~-----h~~~v~~~~~~p--~~~~~l~s~s~dg~i~iw~~~~~~~~ 414 (430)
T 2xyi_A 374 HGG-----HTAKISDFSWNP--NEPWIICSVSEDNIMQVWQMAENVYN 414 (430)
T ss_dssp CCC-----CSSCEEEEEECS--SSTTEEEEEETTSEEEEEEECHHHHC
T ss_pred cCC-----CCCCceEEEECC--CCCCEEEEEECCCCEEEeEccccccc
Confidence 211 112244566666 655 5555566777999998766543
No 141
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=32.32 E-value=2.6e+02 Score=24.53 Aligned_cols=89 Identities=16% Similarity=0.073 Sum_probs=45.4
Q ss_pred EEEEECCCccee-eecCCCCCCCCCCceEEEEE-eCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcc
Q 040444 235 IVAFDLGLEEFR-LLPQPNYGAREKDFVLDVGA-LEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFR 312 (409)
Q Consensus 235 Il~fDl~~e~~~-~i~lP~~~~~~~~~~~~L~~-~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~ 312 (409)
|..+|+.+.+-. .+..+. .. ... ..+.- -+|.+.++...+ ..+.||-+.. ......+.-. ..
T Consensus 250 v~iwd~~~~~~~~~~~~~~-~~--~~v-~~~~~s~~g~~l~~g~~d-~~i~vwd~~~------~~~~~~~~~h-----~~ 313 (340)
T 1got_B 250 CRLFDLRADQELMTYSHDN-II--CGI-TSVSFSKSGRLLLAGYDD-FNCNVWDALK------ADRAGVLAGH-----DN 313 (340)
T ss_dssp EEEEETTTTEEEEEECCTT-CC--SCE-EEEEECTTSSEEEEEETT-SEEEEEETTT------CCEEEEEECC-----SS
T ss_pred EEEEECCCCcEEEEEccCC-cc--cce-EEEEECCCCCEEEEECCC-CeEEEEEccc------CcEeeEeecC-----CC
Confidence 888998865432 233322 11 111 12222 256665555544 4899997653 1233333211 11
Q ss_pred eeeeEEEEeecCCCEEEEEEcCcEEEEEE
Q 040444 313 FLRPLICSNEDGGDKVLLEVNGEKLVWYD 341 (409)
Q Consensus 313 ~~~p~~~~~~~~~~~ill~~~~~~l~~yd 341 (409)
...-+++.+ +|..|+-...++.+..||
T Consensus 314 ~v~~~~~s~--dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 314 RVSCLGVTD--DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CEEEEEECT--TSSCEEEEETTSCEEEEC
T ss_pred cEEEEEEcC--CCCEEEEEcCCccEEecC
Confidence 234456666 666665555566677765
No 142
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=32.18 E-value=2.3e+02 Score=23.84 Aligned_cols=196 Identities=13% Similarity=0.045 Sum_probs=94.5
Q ss_pred EEecccceEEEeeC-CccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCc
Q 040444 91 VFGSCNGLLALSNS-DQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGC 169 (409)
Q Consensus 91 ~~~sc~GLl~l~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~ 169 (409)
+.-..+|-+.+... ...+.++||. ++...++.+.. .....++.+|+.. . +.. ...
T Consensus 20 i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~---------~~~~~~i~~~~~g-~--l~v-~~~---------- 75 (299)
T 2z2n_A 20 ITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTP---------DAKVMCLTISSDG-E--VWF-TEN---------- 75 (299)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSST---------TCCEEEEEECTTS-C--EEE-EET----------
T ss_pred eEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcc---------cCceeeEEECCCC-C--EEE-eCC----------
Confidence 33345677766654 4679999998 77766543211 1234566667543 2 222 111
Q ss_pred ceecEEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEE--CCeEEEEeecCCCCCCccEEEEEECCCcceee
Q 040444 170 FVEYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYV--NGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRL 247 (409)
Q Consensus 170 ~~~~~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~ 247 (409)
..-.+.+|+.. +..+... .|.. . ....++.+ +|.+|...... ..|..+|. +.++..
T Consensus 76 -~~~~i~~~~~~-g~~~~~~-~~~~--------~----~~~~~i~~~~~g~l~v~~~~~------~~i~~~d~-~g~~~~ 133 (299)
T 2z2n_A 76 -AANKIGRITKK-GIIKEYT-LPNP--------D----SAPYGITEGPNGDIWFTEMNG------NRIGRITD-DGKIRE 133 (299)
T ss_dssp -TTTEEEEECTT-SCEEEEE-CSST--------T----CCEEEEEECTTSCEEEEETTT------TEEEEECT-TCCEEE
T ss_pred -CCCeEEEECCC-CcEEEEe-CCCc--------C----CCceeeEECCCCCEEEEecCC------ceEEEECC-CCCEEE
Confidence 01234555554 4444332 1100 0 01122333 47666543322 25999999 666666
Q ss_pred ecCCCCCCCCCCceEEEEEe-CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCC
Q 040444 248 LPQPNYGAREKDFVLDVGAL-EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGD 326 (409)
Q Consensus 248 i~lP~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~ 326 (409)
+..|. .. .. ...+... +|.|++...... .+ +.++.. ..... +.... ......-+++.+ +|.
T Consensus 134 ~~~~~-~~--~~-~~~i~~~~~g~l~v~~~~~~-~i--~~~~~~---g~~~~---~~~~~---~~~~~~~i~~~~--~g~ 195 (299)
T 2z2n_A 134 YELPN-KG--SY-PSFITLGSDNALWFTENQNN-AI--GRITES---GDITE---FKIPT---PASGPVGITKGN--DDA 195 (299)
T ss_dssp EECSS-TT--CC-EEEEEECTTSCEEEEETTTT-EE--EEECTT---CCEEE---EECSS---TTCCEEEEEECT--TSS
T ss_pred ecCCC-CC--CC-CceEEEcCCCCEEEEeCCCC-EE--EEEcCC---CcEEE---eeCCC---CCCcceeEEECC--CCC
Confidence 66664 21 11 1234443 678777654322 43 444432 22222 22111 111122244444 544
Q ss_pred EEEEEEc-CcEEEEEECCCCcEEEEEE
Q 040444 327 KVLLEVN-GEKLVWYDWKRKKLKTVKI 352 (409)
Q Consensus 327 ~ill~~~-~~~l~~yd~~~~~~~~v~~ 352 (409)
+++... ...+..||+ +++++.+..
T Consensus 196 -l~v~~~~~~~i~~~~~-~g~~~~~~~ 220 (299)
T 2z2n_A 196 -LWFVEIIGNKIGRITT-SGEITEFKI 220 (299)
T ss_dssp -EEEEETTTTEEEEECT-TCCEEEEEC
T ss_pred -EEEEccCCceEEEECC-CCcEEEEEC
Confidence 666653 457999999 777766543
No 143
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=31.96 E-value=2.5e+02 Score=24.29 Aligned_cols=115 Identities=8% Similarity=0.094 Sum_probs=58.1
Q ss_pred ECCeEEEEeecCCCCCCccEEEEEECCCcceeeecCCCCCCCCCCceEEEEE-eCCeEEEEEecCC-CeEEEEEEeecCC
Q 040444 215 VNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDFVLDVGA-LEGHMCLMCNYDL-VKVDVWMMKEYGL 292 (409)
Q Consensus 215 ~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~~L~~-~~G~L~~~~~~~~-~~~~IW~l~~~~~ 292 (409)
-+|.+||...... .|..+|..+.++..+..+. . ... ..+.. -+|.|.++..... ..-.|++++..+
T Consensus 54 ~~g~l~~~~~~~~------~i~~~d~~~~~~~~~~~~~-~---~~~-~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~- 121 (333)
T 2dg1_A 54 RQGQLFLLDVFEG------NIFKINPETKEIKRPFVSH-K---ANP-AAIKIHKDGRLFVCYLGDFKSTGGIFAATENG- 121 (333)
T ss_dssp TTSCEEEEETTTC------EEEEECTTTCCEEEEEECS-S---SSE-EEEEECTTSCEEEEECTTSSSCCEEEEECTTS-
T ss_pred CCCCEEEEECCCC------EEEEEeCCCCcEEEEeeCC-C---CCc-ceEEECCCCcEEEEeCCCCCCCceEEEEeCCC-
Confidence 3688887654432 4999999988876653222 1 111 13443 3778777664431 112445554322
Q ss_pred CCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEc-------CcEEEEEECCCCcEEEE
Q 040444 293 KESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVN-------GEKLVWYDWKRKKLKTV 350 (409)
Q Consensus 293 ~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~-------~~~l~~yd~~~~~~~~v 350 (409)
..-... +.... ......-+.+.+ +| .+++... ...|+.+|+++++++.+
T Consensus 122 -~~~~~~--~~~~~---~~~~~~~i~~d~--~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~ 177 (333)
T 2dg1_A 122 -DNLQDI--IEDLS---TAYCIDDMVFDS--KG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI 177 (333)
T ss_dssp -CSCEEE--ECSSS---SCCCEEEEEECT--TS-CEEEEECCCBTTBCCEEEEEECTTSCCEEEE
T ss_pred -CEEEEE--EccCc---cCCcccceEECC--CC-CEEEEeccccccCCCceEEEEeCCCCEEEEe
Confidence 111111 11100 011223345555 54 4566543 24699999988777654
No 144
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=31.44 E-value=2.8e+02 Score=24.76 Aligned_cols=72 Identities=10% Similarity=0.061 Sum_probs=41.1
Q ss_pred CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccc--cCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCC
Q 040444 268 EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRS--ISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRK 345 (409)
Q Consensus 268 ~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~--~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~ 345 (409)
+|...+... .+..+.||-+... .....+..... ........-+++.+ +|..++....++.+..||..++
T Consensus 260 ~~~~l~s~s-~D~~i~lwd~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~g~~dg~i~vwd~~~~ 330 (380)
T 3iz6_a 260 DGQRFGTGS-DDGTCRLFDMRTG------HQLQVYNREPDRNDNELPIVTSVAFSI--SGRLLFAGYSNGDCYVWDTLLA 330 (380)
T ss_dssp TSSEEEEEC-SSSCEEEEETTTT------EEEEEECCCCSSSCCSSCSCSEEEECS--SSSEEEEECTTSCEEEEETTTC
T ss_pred CCCeEEEEc-CCCeEEEEECCCC------cEEEEecccccccccccCceEEEEECC--CCCEEEEEECCCCEEEEECCCC
Confidence 555544443 3459999987641 12222221111 01112244567777 7777776666777999999887
Q ss_pred cEE
Q 040444 346 KLK 348 (409)
Q Consensus 346 ~~~ 348 (409)
+..
T Consensus 331 ~~~ 333 (380)
T 3iz6_a 331 EMV 333 (380)
T ss_dssp CEE
T ss_pred ceE
Confidence 753
No 145
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=31.22 E-value=2.8e+02 Score=24.67 Aligned_cols=68 Identities=9% Similarity=0.150 Sum_probs=35.9
Q ss_pred CeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeeccccc-CCcceeeeEEEEeecCC-CEEEEEEcCc---EEEEEECC
Q 040444 269 GHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSI-SSFRFLRPLICSNEDGG-DKVLLEVNGE---KLVWYDWK 343 (409)
Q Consensus 269 G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~-~~~~~~~p~~~~~~~~~-~~ill~~~~~---~l~~yd~~ 343 (409)
+.+.+.... ...+.||-++.. .....+...... +......-+.+.+ ++ ..++....++ .+..||++
T Consensus 178 ~~~l~~~~~-dg~v~iwd~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d~~~~~i~~~d~~ 248 (416)
T 2pm9_A 178 AHVFASAGS-SNFASIWDLKAK------KEVIHLSYTSPNSGIKQQLSVVEWHP--KNSTRVATATGSDNDPSILIWDLR 248 (416)
T ss_dssp TTEEEEESS-SSCEEEEETTTT------EEEEEECCCCCSSCCCCCEEEEEECS--SCTTEEEEEECCSSSCCCCEEETT
T ss_pred CcEEEEEcC-CCCEEEEECCCC------CcceEEeccccccccCCceEEEEECC--CCCCEEEEEECCCCCceEEEEeCC
Confidence 455554444 448999987641 233333322100 0012244466666 54 3555555554 79999988
Q ss_pred CC
Q 040444 344 RK 345 (409)
Q Consensus 344 ~~ 345 (409)
+.
T Consensus 249 ~~ 250 (416)
T 2pm9_A 249 NA 250 (416)
T ss_dssp ST
T ss_pred CC
Confidence 74
No 146
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=30.93 E-value=2.9e+02 Score=24.72 Aligned_cols=212 Identities=10% Similarity=-0.025 Sum_probs=103.9
Q ss_pred ecccceEEEee-CCccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcce
Q 040444 93 GSCNGLLALSN-SDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFV 171 (409)
Q Consensus 93 ~sc~GLl~l~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~ 171 (409)
+..+|.|...+ ....++.+++.++....+...... ...|+.+|+..+. +.+.. ..
T Consensus 81 d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~----------~p~glavd~~~g~--ly~~d------------~~ 136 (349)
T 3v64_C 81 HHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE----------SPGGLAVDWVHDK--LYWTD------------SG 136 (349)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS----------CCCEEEEETTTTE--EEEEE------------TT
T ss_pred eccccEEEEEeccCCceEEEecCCCCceEEEeCCCC----------CccEEEEecCCCe--EEEEc------------CC
Confidence 34577777766 345788888887765554322211 1256777865543 22221 01
Q ss_pred ecEEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEE---ECCeEEEEeecCCCCCCccEEEEEECCCcceeee
Q 040444 172 EYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVY---VNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLL 248 (409)
Q Consensus 172 ~~~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~---~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i 248 (409)
...+++++.....-+.+.... + ....++. .+|.+||..... ...|..+|+....-..+
T Consensus 137 ~~~I~~~~~dG~~~~~l~~~~------------l--~~P~~iavdp~~g~ly~td~~~-----~~~I~r~~~dG~~~~~~ 197 (349)
T 3v64_C 137 TSRIEVANLDGAHRKVLLWQS------------L--EKPRAIALHPMEGTIYWTDWGN-----TPRIEASSMDGSGRRII 197 (349)
T ss_dssp TTEEEEEETTSCSCEEEECTT------------C--SCEEEEEEETTTTEEEEEECSS-----SCEEEEEETTSCSCEES
T ss_pred CCeEEEEcCCCCceEEEEeCC------------C--CCcceEEEecCcCeEEEeccCC-----CCEEEEEeCCCCCcEEE
Confidence 235667776544322221100 0 0112232 268999986543 13699999986543332
Q ss_pred cCCCCCCCCCCceEEEEE--eCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCC
Q 040444 249 PQPNYGAREKDFVLDVGA--LEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGD 326 (409)
Q Consensus 249 ~lP~~~~~~~~~~~~L~~--~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~ 326 (409)
- .. .. . ..-.|.. .+|.|+++..... .|++.+-.|. .. + ..+... ...|.++.- .++
T Consensus 198 ~-~~-~~-~--~PnGla~d~~~~~lY~aD~~~~---~I~~~~~dG~-~~--~-~~~~~~-------~~~P~giav--~~~ 256 (349)
T 3v64_C 198 A-DT-HL-F--WPNGLTIDYAGRRMYWVDAKHH---VIERANLDGS-HR--K-AVISQG-------LPHPFAITV--FED 256 (349)
T ss_dssp C-CS-SC-S--CEEEEEEETTTTEEEEEETTTT---EEEEEETTSC-SC--E-EEECSS-------CSSEEEEEE--ETT
T ss_pred E-EC-CC-C--CcceEEEeCCCCEEEEEECCCC---EEEEEeCCCC-ce--E-EEEeCC-------CCCceEEEE--ECC
Confidence 1 11 11 1 1113444 4788888765432 4555553331 11 1 111111 134655554 346
Q ss_pred EEEEEEc-CcEEEEEECCCC-cEEEEEEeCCCCceeEeEEEeccc
Q 040444 327 KVLLEVN-GEKLVWYDWKRK-KLKTVKIDGGPDSFVACICVESLI 369 (409)
Q Consensus 327 ~ill~~~-~~~l~~yd~~~~-~~~~v~~~~~~~~~~~~~y~eSlv 369 (409)
.|++... ...|..+|..++ ..+.+.. +...-....+|.++.-
T Consensus 257 ~ly~td~~~~~V~~~~~~~G~~~~~i~~-~~~~p~gi~v~~~~~q 300 (349)
T 3v64_C 257 SLYWTDWHTKSINSANKFTGKNQEIIRN-KLHFPMDIHTLHPQRQ 300 (349)
T ss_dssp EEEEEETTTTEEEEEETTTCCSCEEEEC-SCSCCCCEEEECGGGS
T ss_pred EEEEecCCCCeEEEEEccCCCccEEecc-CCCCCceEEEEccccC
Confidence 6776653 456999995444 4454432 2222233445555443
No 147
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=30.78 E-value=4e+02 Score=26.30 Aligned_cols=189 Identities=6% Similarity=0.020 Sum_probs=90.5
Q ss_pred cEEEEcccc-cceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEEEEEcCCCce
Q 040444 107 DIALFNPAT-RQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRSW 185 (409)
Q Consensus 107 ~~~V~NP~T-~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~vyss~t~~W 185 (409)
.++++|..| ++...+..... .......+.+ |. +++-++.... . ......+.+++..++..
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~~--------~~~~~~~~~~-pD-g~~l~~~~~~--~-------~~~~~~i~~~d~~~g~~ 324 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGKE--------QDIYLARVNW-RD-PQHLSFQRQS--R-------DQKKLDLVEVTLASNQQ 324 (741)
T ss_dssp EEEEECSSTTCCCEEECCCSC--------SSEEEEEEEE-EE-TTEEEEEEEE--T-------TSSEEEEEEEETTTCCE
T ss_pred EEEEEECCCCCceEEecCCCC--------cceEEEEEEe-CC-CCEEEEEEec--c-------cCCeEEEEEEECCCCce
Confidence 688899988 87666543211 0223344555 43 2333333221 1 12345778888888776
Q ss_pred EEccccCcccccceeeeeeee-ecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcceeeecCCCCCCCCCCceEEE
Q 040444 186 TRVKKLPNYLRFMFQFYFHLL-HRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDFVLDV 264 (409)
Q Consensus 186 r~~~~~p~~~~~~~~~~~~~~-~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~~L 264 (409)
+.+..... .... ........-+|.+++....+. ...|..+|+... ... +.. .. .... .+
T Consensus 325 ~~~~~~~~---------~~~~~~~~~~~~spdg~~~~~~~~~g----~~~l~~~~~~~~-~~~--l~~-~~--~~v~-~~ 384 (741)
T 2ecf_A 325 RVLAHETS---------PTWVPLHNSLRFLDDGSILWSSERTG----FQHLYRIDSKGK-AAA--LTH-GN--WSVD-EL 384 (741)
T ss_dssp EEEEEEEC---------SSCCCCCSCCEECTTSCEEEEECTTS----SCEEEEECSSSC-EEE--SCC-SS--SCEE-EE
T ss_pred EEEEEcCC---------CCcCCcCCceEECCCCeEEEEecCCC----ccEEEEEcCCCC-eee--eee-cc--eEEE-eE
Confidence 65432110 0000 001122234677777664432 235888887665 333 322 11 1111 22
Q ss_pred --EEeCCe-EEEEEecCC-CeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcC----cE
Q 040444 265 --GALEGH-MCLMCNYDL-VKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNG----EK 336 (409)
Q Consensus 265 --~~~~G~-L~~~~~~~~-~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~----~~ 336 (409)
..-+|+ |++....+. ..+.||.++..+. ....+.. .....-+.+.+ +|..+++...+ ..
T Consensus 385 ~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~-----~~~~l~~------~~~~~~~~~sp--dg~~l~~~~~~~~~p~~ 451 (741)
T 2ecf_A 385 LAVDEKAGLAYFRAGIESARESQIYAVPLQGG-----QPQRLSK------APGMHSASFAR--NASVYVDSWSNNSTPPQ 451 (741)
T ss_dssp EEEETTTTEEEEEECSSCTTCBEEEEEETTCC-----CCEECCC------SCSEEEEEECT--TSSEEEEEEEETTEEEE
T ss_pred eEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC-----Ceeeccc------CCCceEEEECC--CCCEEEEEecCCCCCCe
Confidence 233564 444443321 2789999874331 1112221 11123456666 77776665322 34
Q ss_pred EEEEECCCCcE
Q 040444 337 LVWYDWKRKKL 347 (409)
Q Consensus 337 l~~yd~~~~~~ 347 (409)
++.+|..++.+
T Consensus 452 ~~l~~~~~~~~ 462 (741)
T 2ecf_A 452 IELFRANGEKI 462 (741)
T ss_dssp EEEEETTSCEE
T ss_pred EEEEEcCCCeE
Confidence 77787755443
No 148
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=30.59 E-value=2.3e+02 Score=23.45 Aligned_cols=186 Identities=13% Similarity=-0.003 Sum_probs=92.2
Q ss_pred CccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEEEEEcCC-C
Q 040444 105 DQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKN-R 183 (409)
Q Consensus 105 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~vyss~t-~ 183 (409)
+..++++|+.+++...+..... ...++.+.|.. .+-++. . ...+.+++..+ +
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~~~-----------~v~~~~~spdg-~~l~~~--~-------------~~~i~~~d~~~~~ 73 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQTPE-----------LFEAPNWSPDG-KYLLLN--S-------------EGLLYRLSLAGDP 73 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEESS-----------CCEEEEECTTS-SEEEEE--E-------------TTEEEEEESSSCC
T ss_pred ceeEEEEeCCCCceeeeccCCc-----------ceEeeEECCCC-CEEEEE--c-------------CCeEEEEeCCCCC
Confidence 4679999999988776654221 12345555543 332221 1 12677888888 7
Q ss_pred ceEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcceeeecCCCCCCCCCCceEE
Q 040444 184 SWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDFVLD 263 (409)
Q Consensus 184 ~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~~ 263 (409)
....+...+.. .. .......-+|.......... .....|..+|+.+.+...+.... . ...
T Consensus 74 ~~~~~~~~~~~--------~~---~~~~~~spdg~~l~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~-----~--~~~ 133 (297)
T 2ojh_A 74 SPEKVDTGFAT--------IC---NNDHGISPDGALYAISDKVE--FGKSAIYLLPSTGGTPRLMTKNL-----P--SYW 133 (297)
T ss_dssp SCEECCCTTCC--------CB---CSCCEECTTSSEEEEEECTT--TSSCEEEEEETTCCCCEECCSSS-----S--EEE
T ss_pred CceEecccccc--------cc---ccceEECCCCCEEEEEEeCC--CCcceEEEEECCCCceEEeecCC-----C--ccc
Confidence 66655422200 00 01111222454333332111 01235888888876655443332 1 112
Q ss_pred EEEe-CCeEEE-EEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEc-C--cEEE
Q 040444 264 VGAL-EGHMCL-MCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVN-G--EKLV 338 (409)
Q Consensus 264 L~~~-~G~L~~-~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~-~--~~l~ 338 (409)
+.-. +|+..+ .... ...+.||.++..+ .... .+... .....-+.+.+ +|..|++... + ..++
T Consensus 134 ~~~spdg~~l~~~~~~-~~~~~l~~~~~~~--~~~~---~~~~~-----~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~ 200 (297)
T 2ojh_A 134 HGWSPDGKSFTYCGIR-DQVFDIYSMDIDS--GVET---RLTHG-----EGRNDGPDYSP--DGRWIYFNSSRTGQMQIW 200 (297)
T ss_dssp EEECTTSSEEEEEEEE-TTEEEEEEEETTT--CCEE---ECCCS-----SSCEEEEEECT--TSSEEEEEECTTSSCEEE
T ss_pred eEECCCCCEEEEEECC-CCceEEEEEECCC--Ccce---EcccC-----CCccccceECC--CCCEEEEEecCCCCccEE
Confidence 2222 555434 4433 3479999987532 1111 11111 11233456666 7776766543 2 3577
Q ss_pred EEECCCCcEEEE
Q 040444 339 WYDWKRKKLKTV 350 (409)
Q Consensus 339 ~yd~~~~~~~~v 350 (409)
.+++.++..+.+
T Consensus 201 ~~~~~~~~~~~~ 212 (297)
T 2ojh_A 201 RVRVDGSSVERI 212 (297)
T ss_dssp EEETTSSCEEEC
T ss_pred EECCCCCCcEEE
Confidence 778777776654
No 149
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=30.41 E-value=3e+02 Score=24.73 Aligned_cols=201 Identities=14% Similarity=0.146 Sum_probs=92.4
Q ss_pred cc-eEEEeeCCccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecE
Q 040444 96 NG-LLALSNSDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYE 174 (409)
Q Consensus 96 ~G-Ll~l~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~ 174 (409)
+| +|+....++.+.|||..+++....-... ......+.+.+.. ++ ++... .+-.
T Consensus 134 dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h----------~~~v~~~~~~p~~-~~-l~s~s-------------~d~~ 188 (393)
T 1erj_A 134 DGKFLATGAEDRLIRIWDIENRKIVMILQGH----------EQDIYSLDYFPSG-DK-LVSGS-------------GDRT 188 (393)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCC----------SSCEEEEEECTTS-SE-EEEEE-------------TTSE
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEccC----------CCCEEEEEEcCCC-CE-EEEec-------------CCCc
Confidence 55 3444445778999999887654321111 2224556666543 22 22211 1236
Q ss_pred EEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEE-CCeEEEEeecCCCCCCccEEEEEECCCcceee-ecCCC
Q 040444 175 VKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYV-NGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRL-LPQPN 252 (409)
Q Consensus 175 ~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~-~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~-i~lP~ 252 (409)
+.+++..++.-...-.... .. ..-.+.- +|.+......+. .|..+|+.+.+... +..+.
T Consensus 189 v~iwd~~~~~~~~~~~~~~----------~v---~~~~~~~~~~~~l~~~s~d~------~v~iwd~~~~~~~~~~~~~~ 249 (393)
T 1erj_A 189 VRIWDLRTGQCSLTLSIED----------GV---TTVAVSPGDGKYIAAGSLDR------AVRVWDSETGFLVERLDSEN 249 (393)
T ss_dssp EEEEETTTTEEEEEEECSS----------CE---EEEEECSTTCCEEEEEETTS------CEEEEETTTCCEEEEEC---
T ss_pred EEEEECCCCeeEEEEEcCC----------Cc---EEEEEECCCCCEEEEEcCCC------cEEEEECCCCcEEEeecccc
Confidence 7788887765432211110 00 0000111 344433333332 38889988765432 32222
Q ss_pred CC-CCCCCceEEEEEe-CCeEEEEEecCCCeEEEEEEeecCCCCc------eeEEEEeecccccCCcceeeeEEEEeecC
Q 040444 253 YG-AREKDFVLDVGAL-EGHMCLMCNYDLVKVDVWMMKEYGLKES------WSKMFSIDRCRSISSFRFLRPLICSNEDG 324 (409)
Q Consensus 253 ~~-~~~~~~~~~L~~~-~G~L~~~~~~~~~~~~IW~l~~~~~~~~------W~~~~~I~~~~~~~~~~~~~p~~~~~~~~ 324 (409)
.. ..+...-..+.-. +|.+.+.... +..+.||-+........ ......+. +......-+++.+ +
T Consensus 250 ~~~~~h~~~v~~v~~~~~g~~l~s~s~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~--~ 321 (393)
T 1erj_A 250 ESGTGHKDSVYSVVFTRDGQSVVSGSL-DRSVKLWNLQNANNKSDSKTPNSGTCEVTYI-----GHKDFVLSVATTQ--N 321 (393)
T ss_dssp ---CCCSSCEEEEEECTTSSEEEEEET-TSEEEEEEC---------------CEEEEEE-----CCSSCEEEEEECG--G
T ss_pred cCCCCCCCCEEEEEECCCCCEEEEEeC-CCEEEEEECCCCCCcccccCCCCCcceEEEe-----cccCcEEEEEECC--C
Confidence 00 1011111123322 5665444444 44999998875321100 11111111 1111233456666 6
Q ss_pred CCEEEEEEcCcEEEEEECCCCcEE
Q 040444 325 GDKVLLEVNGEKLVWYDWKRKKLK 348 (409)
Q Consensus 325 ~~~ill~~~~~~l~~yd~~~~~~~ 348 (409)
+..|+....++.+..||+++++..
T Consensus 322 ~~~l~sgs~D~~v~iwd~~~~~~~ 345 (393)
T 1erj_A 322 DEYILSGSKDRGVLFWDKKSGNPL 345 (393)
T ss_dssp GCEEEEEETTSEEEEEETTTCCEE
T ss_pred CCEEEEEeCCCeEEEEECCCCeEE
Confidence 666666666778999999988753
No 150
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=30.23 E-value=2.6e+02 Score=23.97 Aligned_cols=107 Identities=9% Similarity=0.037 Sum_probs=53.2
Q ss_pred EEEEEECCCcceeeecCCCCCCCCCCceEEEE-EeCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcc
Q 040444 234 LIVAFDLGLEEFRLLPQPNYGAREKDFVLDVG-ALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFR 312 (409)
Q Consensus 234 ~Il~fDl~~e~~~~i~lP~~~~~~~~~~~~L~-~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~ 312 (409)
.|..||...+.--.+..|. .. ... ... .-+|.+.++.... .-.|+.++..| +..|... +... ......
T Consensus 57 ~V~~~d~~G~~~W~~~~~~-~~---~~~-~~~~~~dG~~lv~~~~~--~~~v~~vd~~G-k~l~~~~--~~~~-~~~~~~ 125 (276)
T 3no2_A 57 GAKMITRDGRELWNIAAPA-GC---EMQ-TARILPDGNALVAWCGH--PSTILEVNMKG-EVLSKTE--FETG-IERPHA 125 (276)
T ss_dssp EEEEECTTSCEEEEEECCT-TC---EEE-EEEECTTSCEEEEEEST--TEEEEEECTTS-CEEEEEE--ECCS-CSSGGG
T ss_pred CEEEECCCCCEEEEEcCCC-Cc---ccc-ccEECCCCCEEEEecCC--CCEEEEEeCCC-CEEEEEe--ccCC-CCcccc
Confidence 4999999544333455553 11 111 122 2367776665431 34566666433 3344432 2211 001111
Q ss_pred eeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcEEEEEEe
Q 040444 313 FLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKLKTVKID 353 (409)
Q Consensus 313 ~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~~~v~~~ 353 (409)
...-+.... +|+.++....+..++.||++.+.+-++...
T Consensus 126 ~~~~v~~~~--~G~~lv~~~~~~~v~~~d~~G~~~w~~~~~ 164 (276)
T 3no2_A 126 QFRQINKNK--KGNYLVPLFATSEVREIAPNGQLLNSVKLS 164 (276)
T ss_dssp SCSCCEECT--TSCEEEEETTTTEEEEECTTSCEEEEEECS
T ss_pred cccCceECC--CCCEEEEecCCCEEEEECCCCCEEEEEECC
Confidence 122234444 777666555567899999995555555443
No 151
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=30.08 E-value=3.1e+02 Score=24.68 Aligned_cols=97 Identities=9% Similarity=0.112 Sum_probs=53.3
Q ss_pred EEEEECCCcceeeecCCCCCCCCCCceEEEEEe--CCeEEEEEe-cCCCeEEEEEEeecCCCCceeEEEEeecccccCCc
Q 040444 235 IVAFDLGLEEFRLLPQPNYGAREKDFVLDVGAL--EGHMCLMCN-YDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSF 311 (409)
Q Consensus 235 Il~fDl~~e~~~~i~lP~~~~~~~~~~~~L~~~--~G~L~~~~~-~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~ 311 (409)
|..+|+.+.+....-... . .... .+... ++.|.+... .....+.+|-+... .....+...
T Consensus 241 v~iwd~~~~~~~~~~~~~-~---~~v~-~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~------~~~~~~~~~------ 303 (401)
T 4aez_A 241 VQIWDARSSIPKFTKTNH-N---AAVK-AVAWCPWQSNLLATGGGTMDKQIHFWNAATG------ARVNTVDAG------ 303 (401)
T ss_dssp EEEEETTCSSEEEEECCC-S---SCCC-EEEECTTSTTEEEEECCTTTCEEEEEETTTC------CEEEEEECS------
T ss_pred EEEccCCCCCccEEecCC-c---ceEE-EEEECCCCCCEEEEecCCCCCEEEEEECCCC------CEEEEEeCC------
Confidence 889999875443221111 1 1111 22333 334444442 23458999987641 233333321
Q ss_pred ceeeeEEEEeecCCCEEEEEE--cCcEEEEEECCCCcEEEE
Q 040444 312 RFLRPLICSNEDGGDKVLLEV--NGEKLVWYDWKRKKLKTV 350 (409)
Q Consensus 312 ~~~~p~~~~~~~~~~~ill~~--~~~~l~~yd~~~~~~~~v 350 (409)
....-+.+.+ ++..++... .++.+..||+.++....+
T Consensus 304 ~~v~~~~~s~--~~~~l~~~~g~~dg~i~v~~~~~~~~~~~ 342 (401)
T 4aez_A 304 SQVTSLIWSP--HSKEIMSTHGFPDNNLSIWSYSSSGLTKQ 342 (401)
T ss_dssp SCEEEEEECS--SSSEEEEEECTTTCEEEEEEEETTEEEEE
T ss_pred CcEEEEEECC--CCCeEEEEeecCCCcEEEEecCCccceeE
Confidence 1244567777 777777654 467799999999876554
No 152
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=30.01 E-value=4.2e+02 Score=26.29 Aligned_cols=116 Identities=11% Similarity=0.073 Sum_probs=62.7
Q ss_pred ECCeEEEEeecCCCCCCccEEEEEECCCc---ceeeecCCCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEEEeecC
Q 040444 215 VNGVVHWVSPRRPEFGIGNLIVAFDLGLE---EFRLLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYG 291 (409)
Q Consensus 215 ~~G~lywl~~~~~~~~~~~~Il~fDl~~e---~~~~i~lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~ 291 (409)
-++.+|.++..+. ....|+..|+.+. .|+.+ .|. .. . .. .+...++.|.+....+. .-.|++++-.+
T Consensus 290 ~g~~l~~~t~~~~---~~~~l~~~d~~~~~~~~~~~l-~~~-~~--~-~~-~~s~~g~~lv~~~~~~g-~~~l~~~d~~g 359 (693)
T 3iuj_A 290 KGSTLYLLTNRDA---PNRRLVTVDAANPGPAHWRDL-IPE-RQ--Q-VL-TVHSGSGYLFAEYMVDA-TARVEQFDYEG 359 (693)
T ss_dssp ETTEEEEEECTTC---TTCEEEEEETTSCCGGGCEEE-ECC-CS--S-CE-EEEEETTEEEEEEEETT-EEEEEEECTTS
T ss_pred cCCEEEEEECCCC---CCCEEEEEeCCCCCccccEEE-ecC-CC--C-EE-EEEEECCEEEEEEEECC-eeEEEEEECCC
Confidence 3567887765532 2357999999863 35543 222 11 1 11 44555777766665543 44555554322
Q ss_pred CCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcC----cEEEEEECCCCcEEEEE
Q 040444 292 LKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNG----EKLVWYDWKRKKLKTVK 351 (409)
Q Consensus 292 ~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~----~~l~~yd~~~~~~~~v~ 351 (409)
.+. ..|.++.. .....+...+ +++.+++...+ ..++.||+++++.+.+.
T Consensus 360 ---~~~--~~l~~p~~----~~~~~~~~~~--d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~ 412 (693)
T 3iuj_A 360 ---KRV--REVALPGL----GSVSGFNGKH--DDPALYFGFENYAQPPTLYRFEPKSGAISLYR 412 (693)
T ss_dssp ---CEE--EEECCSSS----SEEEECCCCT--TCSCEEEEEECSSSCCEEEEECTTTCCEEEEE
T ss_pred ---Cee--EEeecCCC----ceEEeeecCC--CCCEEEEEecCCCCCCEEEEEECCCCeEEEEE
Confidence 232 33443211 1122223333 56777766443 56999999998876653
No 153
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=30.00 E-value=2.8e+02 Score=24.19 Aligned_cols=89 Identities=15% Similarity=0.188 Sum_probs=48.3
Q ss_pred EEEEEECCCcceee-ecCCCCCCCCCCceEEEEEe-CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCc
Q 040444 234 LIVAFDLGLEEFRL-LPQPNYGAREKDFVLDVGAL-EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSF 311 (409)
Q Consensus 234 ~Il~fDl~~e~~~~-i~lP~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~ 311 (409)
.|..+|+.+.+... +.... ..-..+.-. +|...+.... +..+.||-++. ......+.-. .
T Consensus 229 ~i~iwd~~~~~~~~~~~~h~------~~v~~~~~sp~~~~l~s~s~-D~~v~iwd~~~------~~~~~~~~~h-----~ 290 (321)
T 3ow8_A 229 YIKIYDVQHANLAGTLSGHA------SWVLNVAFCPDDTHFVSSSS-DKSVKVWDVGT------RTCVHTFFDH-----Q 290 (321)
T ss_dssp CEEEEETTTCCEEEEECCCS------SCEEEEEECTTSSEEEEEET-TSCEEEEETTT------TEEEEEECCC-----S
T ss_pred eEEEEECCCcceeEEEcCCC------CceEEEEECCCCCEEEEEeC-CCcEEEEeCCC------CEEEEEEcCC-----C
Confidence 38889988665432 22111 111123322 5655444443 44899997753 2334433211 1
Q ss_pred ceeeeEEEEeecCCCEEEEEEcCcEEEEEEC
Q 040444 312 RFLRPLICSNEDGGDKVLLEVNGEKLVWYDW 342 (409)
Q Consensus 312 ~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~ 342 (409)
....-+.+.+ ++..|+-...++.+..||.
T Consensus 291 ~~v~~v~~s~--~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 291 DQVWGVKYNG--NGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp SCEEEEEECT--TSSEEEEEETTCCEEEEEC
T ss_pred CcEEEEEECC--CCCEEEEEeCCCeEEEEeC
Confidence 2244566766 7777776666777888885
No 154
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=29.80 E-value=2.5e+02 Score=23.58 Aligned_cols=195 Identities=10% Similarity=0.054 Sum_probs=97.0
Q ss_pred ecccceEEEeeC-CccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcce
Q 040444 93 GSCNGLLALSNS-DQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFV 171 (409)
Q Consensus 93 ~sc~GLl~l~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~ 171 (409)
+..+|.|...+. ...+.++++.++....+-... .....++.+|+..+. +.... . .
T Consensus 44 d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~----------~~~p~~ia~d~~~~~--lyv~d---~---------~ 99 (267)
T 1npe_A 44 DCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD----------LGSPEGIALDHLGRT--IFWTD---S---------Q 99 (267)
T ss_dssp ETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT----------CCCEEEEEEETTTTE--EEEEE---T---------T
T ss_pred ecCCCEEEEEECCCCEEEEEecCCCCcEEEEECC----------CCCccEEEEEecCCe--EEEEE---C---------C
Confidence 344666666653 457888888776543332111 123467778875432 22221 0 1
Q ss_pred ecEEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEE---CCeEEEEeecCCCCCCccEEEEEECCCcceeee
Q 040444 172 EYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYV---NGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLL 248 (409)
Q Consensus 172 ~~~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i 248 (409)
...+.+++.....-+.+.... . ....++.+ +|.+||...... ...|..+++.......+
T Consensus 100 ~~~I~~~~~~g~~~~~~~~~~------------~--~~P~~i~vd~~~g~lyv~~~~~~----~~~I~~~~~dg~~~~~~ 161 (267)
T 1npe_A 100 LDRIEVAKMDGTQRRVLFDTG------------L--VNPRGIVTDPVRGNLYWTDWNRD----NPKIETSHMDGTNRRIL 161 (267)
T ss_dssp TTEEEEEETTSCSCEEEECSS------------C--SSEEEEEEETTTTEEEEEECCSS----SCEEEEEETTSCCCEEE
T ss_pred CCEEEEEEcCCCCEEEEEECC------------C--CCccEEEEeeCCCEEEEEECCCC----CcEEEEEecCCCCcEEE
Confidence 235667776543322221111 0 01122333 589999864321 13588999876554433
Q ss_pred cCCCCCCCCCCceEEEEEe--CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCC
Q 040444 249 PQPNYGAREKDFVLDVGAL--EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGD 326 (409)
Q Consensus 249 ~lP~~~~~~~~~~~~L~~~--~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~ 326 (409)
.... . . ....+... ++.|+++..... . |++++-.+. .....+.. ...|.++.. +++
T Consensus 162 ~~~~--~-~--~P~gia~d~~~~~lyv~d~~~~-~--I~~~~~~g~----~~~~~~~~--------~~~P~gi~~--d~~ 219 (267)
T 1npe_A 162 AQDN--L-G--LPNGLTFDAFSSQLCWVDAGTH-R--AECLNPAQP----GRRKVLEG--------LQYPFAVTS--YGK 219 (267)
T ss_dssp ECTT--C-S--CEEEEEEETTTTEEEEEETTTT-E--EEEEETTEE----EEEEEEEC--------CCSEEEEEE--ETT
T ss_pred EECC--C-C--CCcEEEEcCCCCEEEEEECCCC-E--EEEEecCCC----ceEEEecC--------CCCceEEEE--eCC
Confidence 2111 1 1 11133333 567877765433 4 444443221 11111221 124666665 557
Q ss_pred EEEEEEc-CcEEEEEECCCCcE-EEEE
Q 040444 327 KVLLEVN-GEKLVWYDWKRKKL-KTVK 351 (409)
Q Consensus 327 ~ill~~~-~~~l~~yd~~~~~~-~~v~ 351 (409)
.+++... ...+..+|+++++. +.+.
T Consensus 220 ~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 220 NLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred EEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 7777653 46799999998775 4443
No 155
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=29.57 E-value=4.1e+02 Score=26.05 Aligned_cols=191 Identities=10% Similarity=0.071 Sum_probs=93.8
Q ss_pred ccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEEEEEcCCC-c
Q 040444 106 QDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNR-S 184 (409)
Q Consensus 106 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~vyss~t~-~ 184 (409)
..++|+|..|++...+...... ......+.+.|.. ++-++. . ... ......+.+++..++ .
T Consensus 235 ~~l~~~d~~~~~~~~~~~~~~~--------~~~~~~~~~spdg-~~l~~~-~-~~~-------~~~~~~v~~~d~~~g~~ 296 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQTGEPK--------EKFLTNLSWSPDE-NILYVA-E-VNR-------AQNECKVNAYDAETGRF 296 (706)
T ss_dssp EEEEEEETTTTEEEECCCCSCT--------TCEEEEEEECTTS-SEEEEE-E-ECT-------TSCEEEEEEEETTTCCE
T ss_pred eEEEEEECCCCceEeeccCCCC--------ceeEeeEEEECCC-CEEEEE-E-eCC-------CCCeeEEEEEECCCCce
Confidence 4789999999887665432110 2233445555533 222222 1 111 123457778888887 6
Q ss_pred eEEccccCcccccceeeeeeeeecccceEE-E--CCeEEEEeecCCCCCCccEEEEEECCCcceeeecCCCCCCCCCCce
Q 040444 185 WTRVKKLPNYLRFMFQFYFHLLHRRGYGVY-V--NGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDFV 261 (409)
Q Consensus 185 Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~-~--~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~ 261 (409)
.+.+..... ...........+ - +|.+.+....+. ...|..+|........+.... ...
T Consensus 297 ~~~~~~~~~---------~~~~~~~~~~~~sp~~dg~~l~~~~~~g----~~~l~~~~~~~~~~~~l~~~~-----~~v- 357 (706)
T 2z3z_A 297 VRTLFVETD---------KHYVEPLHPLTFLPGSNNQFIWQSRRDG----WNHLYLYDTTGRLIRQVTKGE-----WEV- 357 (706)
T ss_dssp EEEEEEEEC---------SSCCCCCSCCEECTTCSSEEEEEECTTS----SCEEEEEETTSCEEEECCCSS-----SCE-
T ss_pred eeEEEEccC---------CCeECccCCceeecCCCCEEEEEEccCC----ccEEEEEECCCCEEEecCCCC-----eEE-
Confidence 665531110 000000011122 2 787666554332 235888887766666553222 111
Q ss_pred EE-EEEe-CC-eEEEEEecCC-CeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcC---
Q 040444 262 LD-VGAL-EG-HMCLMCNYDL-VKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNG--- 334 (409)
Q Consensus 262 ~~-L~~~-~G-~L~~~~~~~~-~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~--- 334 (409)
.. +... +| .|++...... ....||.++-.+ .... .+... ....-+.+.+ +|..|++...+
T Consensus 358 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~--~~~~---~l~~~------~~~~~~~~sp--dg~~l~~~~~~~~~ 424 (706)
T 2z3z_A 358 TNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG--GKTK---DLTPE------SGMHRTQLSP--DGSAIIDIFQSPTV 424 (706)
T ss_dssp EEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC--CCCE---ESCCS------SSEEEEEECT--TSSEEEEEEECSSC
T ss_pred EeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC--CCce---eccCC------CceEEEEECC--CCCEEEEEecCCCC
Confidence 11 2222 45 4555444322 257888887432 2121 22211 1133456667 77777665332
Q ss_pred -cEEEEEECCCCc
Q 040444 335 -EKLVWYDWKRKK 346 (409)
Q Consensus 335 -~~l~~yd~~~~~ 346 (409)
..++.+|+++++
T Consensus 425 p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 425 PRKVTVTNIGKGS 437 (706)
T ss_dssp SCEEEEEESSSCE
T ss_pred CcEEEEEECCCCe
Confidence 458999998887
No 156
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=29.36 E-value=3.4e+02 Score=24.92 Aligned_cols=130 Identities=12% Similarity=0.060 Sum_probs=67.4
Q ss_pred CCeEEEEeecCCCCCCccEEEEEECCCcceeeecCCCCCCCCCCceEEEEE--eCCeEEEEEecCCCeEEEEEEeecCCC
Q 040444 216 NGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDFVLDVGA--LEGHMCLMCNYDLVKVDVWMMKEYGLK 293 (409)
Q Consensus 216 ~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~~L~~--~~G~L~~~~~~~~~~~~IW~l~~~~~~ 293 (409)
+|.+||...... ..|..+|+....-..+-. . .. .. .-.|.. .+|+|+++.... -.||+.+-.| .
T Consensus 213 ~g~ly~td~~~~-----~~I~~~~~dG~~~~~~~~-~-~l-~~--P~glavd~~~~~lY~aD~~~---~~I~~~d~dG-~ 278 (400)
T 3p5b_L 213 HGFMYWTDWGTP-----AKIKKGGLNGVDIYSLVT-E-NI-QW--PNGITLDLLSGRLYWVDSKL---HSISSIDVNG-G 278 (400)
T ss_dssp TTEEEEEECSSS-----CCEEEEETTSCSCEEEEC-S-SC-SC--EEEEEEETTTTEEEEEETTT---TEEEEEETTS-C
T ss_pred cCeEEEEeCCCC-----CEEEEEeCCCCccEEEEE-C-CC-Cc--eEEEEEEeCCCEEEEEECCC---CEEEEEeCCC-C
Confidence 689999864322 249999998654333211 1 11 11 113444 378888886543 3566666433 2
Q ss_pred CceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEc-CcEEEEEECCCCc-EEEEEEeCCCCceeEeEEEecccc
Q 040444 294 ESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVN-GEKLVWYDWKRKK-LKTVKIDGGPDSFVACICVESLIP 370 (409)
Q Consensus 294 ~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~-~~~l~~yd~~~~~-~~~v~~~~~~~~~~~~~y~eSlv~ 370 (409)
...+. +... .....|.++.. .++.|+.... ...|..+|..+++ .+.+. .+...-....+|.+..-|
T Consensus 279 ~~~~~---~~~~-----~~l~~P~gl~v--~~~~lywtd~~~~~V~~~~~~~G~~~~~i~-~~~~~p~~i~v~~~~~qp 346 (400)
T 3p5b_L 279 NRKTI---LEDE-----KRLAHPFSLAV--FEDKVFWTDIINEAIFSANRLTGSDVNLLA-ENLLSPEDMVLFHNLTQP 346 (400)
T ss_dssp CCEEE---EECS-----STTSSEEEEEE--ETTEEEEEESSSCSEEEEESSSCCCCEEEE-CSCSCEEEEEEESGGGSC
T ss_pred ccEEE---EeCC-----CCCCCCEEEEE--eCCEEEEecCCCCeEEEEEcCCCCceEEEe-cCCCCCceEEEEeeccCC
Confidence 22221 1111 11235666665 4567776643 3459999966654 44443 333333445556655443
No 157
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=28.86 E-value=1.9e+02 Score=27.73 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=28.7
Q ss_pred eeEEEEeecCCCEEEEEEcCcEEEEEECCCCcEEEE
Q 040444 315 RPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKLKTV 350 (409)
Q Consensus 315 ~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~~~v 350 (409)
-|+++.-.+.-|.|++.+..+.++.||++|++.-..
T Consensus 260 FPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~ 295 (494)
T 1bpo_A 260 FPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM 295 (494)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred ceeEEEecccCCEEEEEecCceEEEEecccceeeee
Confidence 466665555779999999988999999999996443
No 158
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=28.86 E-value=2.7e+02 Score=23.74 Aligned_cols=100 Identities=11% Similarity=0.085 Sum_probs=47.2
Q ss_pred EEEEEECCCcceee-ecCCCCCCCCCCceEEEEE-eCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCc
Q 040444 234 LIVAFDLGLEEFRL-LPQPNYGAREKDFVLDVGA-LEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSF 311 (409)
Q Consensus 234 ~Il~fDl~~e~~~~-i~lP~~~~~~~~~~~~L~~-~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~ 311 (409)
.|..+|+.+.+... +.... ..... .+.- -+|...++... ...+.||-+... .....+..... ..
T Consensus 172 ~i~~wd~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~l~~~~~-d~~i~iwd~~~~------~~~~~~~~~~~--~~ 237 (312)
T 4ery_A 172 LCRIWDTASGQCLKTLIDDD----NPPVS-FVKFSPNGKYILAATL-DNTLKLWDYSKG------KCLKTYTGHKN--EK 237 (312)
T ss_dssp CEEEEETTTCCEEEEECCSS----CCCEE-EEEECTTSSEEEEEET-TTEEEEEETTTT------EEEEEECSSCC--SS
T ss_pred cEEEEECCCCceeeEEeccC----CCceE-EEEECCCCCEEEEEcC-CCeEEEEECCCC------cEEEEEEecCC--ce
Confidence 38889998765432 22211 11111 1222 25555444444 348999987641 12222221110 00
Q ss_pred ceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcEEE
Q 040444 312 RFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKLKT 349 (409)
Q Consensus 312 ~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~~~ 349 (409)
.... ..+.. .++..++....++.+..||+++++...
T Consensus 238 ~~~~-~~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~ 273 (312)
T 4ery_A 238 YCIF-ANFSV-TGGKWIVSGSEDNLVYIWNLQTKEIVQ 273 (312)
T ss_dssp SCCC-EEEEC-SSSCEEEECCTTSCEEEEETTTCCEEE
T ss_pred EEEE-EEEEe-CCCcEEEEECCCCEEEEEECCCchhhh
Confidence 0111 12222 144444444456679999999987643
No 159
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=28.84 E-value=3e+02 Score=24.13 Aligned_cols=72 Identities=11% Similarity=0.097 Sum_probs=39.6
Q ss_pred CCeEEEEEecCCCeEEEEEEeecCCCCceeE-EEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCc
Q 040444 268 EGHMCLMCNYDLVKVDVWMMKEYGLKESWSK-MFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKK 346 (409)
Q Consensus 268 ~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~-~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~ 346 (409)
+|.+.+.... +..+.||-+........... ...+. +......-+++.+ ++..++-...++.+..||+++++
T Consensus 38 d~~~l~sgs~-D~~v~iWd~~~~~~~~~~~~~~~~l~-----~h~~~V~~~~~~~--~~~~l~s~s~D~~v~lwd~~~~~ 109 (343)
T 2xzm_R 38 DSPVLISGSR-DKTVMIWKLYEEEQNGYFGIPHKALT-----GHNHFVSDLALSQ--ENCFAISSSWDKTLRLWDLRTGT 109 (343)
T ss_dssp CCCEEEEEET-TSCEEEEEECSSCCSSBSEEEEEEEC-----CCSSCEEEEEECS--STTEEEEEETTSEEEEEETTSSC
T ss_pred CCCEEEEEcC-CCEEEEEECCcCCcccccccccchhc-----cCCCceEEEEECC--CCCEEEEEcCCCcEEEEECCCCc
Confidence 3444444443 34899999875321111111 11111 1112244566666 66666666667789999999876
Q ss_pred E
Q 040444 347 L 347 (409)
Q Consensus 347 ~ 347 (409)
.
T Consensus 110 ~ 110 (343)
T 2xzm_R 110 T 110 (343)
T ss_dssp E
T ss_pred E
Confidence 4
No 160
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=28.41 E-value=4.4e+02 Score=25.96 Aligned_cols=27 Identities=11% Similarity=0.089 Sum_probs=19.6
Q ss_pred eeEEEEeecCCCEEEEEEcCcEEEEEECC
Q 040444 315 RPLICSNEDGGDKVLLEVNGEKLVWYDWK 343 (409)
Q Consensus 315 ~p~~~~~~~~~~~ill~~~~~~l~~yd~~ 343 (409)
.-+.+.+ +|..|+....++.+..||+.
T Consensus 666 ~~l~~sp--dg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 666 TSLNWSA--DGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEEECT--TSSEEEEEETTSEEEEEEC-
T ss_pred eeEEEcC--CCCEEEEEcCCCeEEEEecc
Confidence 3456677 77777777778889999985
No 161
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=27.90 E-value=2.8e+02 Score=23.56 Aligned_cols=116 Identities=10% Similarity=0.041 Sum_probs=0.0
Q ss_pred CCeEEEE-------eecCCCCCCccEEEEEECCCcceeeecCCCCCCCCCCceEEEEEeC-CeEEEEEecCCCeEEEEEE
Q 040444 216 NGVVHWV-------SPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDFVLDVGALE-GHMCLMCNYDLVKVDVWMM 287 (409)
Q Consensus 216 ~G~lywl-------~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~~L~~~~-G~L~~~~~~~~~~~~IW~l 287 (409)
+|.+|+. ...... |..+|..+.++..+..|...........-...-+ |.|.++.... .|+++
T Consensus 28 ~g~l~~~~~~~~~~~~~~~~------i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~----~l~~~ 97 (314)
T 1pjx_A 28 NGDFYIVAPEVEVNGKPAGE------ILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRL----GLLVV 97 (314)
T ss_dssp TSCEEEEETTCEETTEECCE------EEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTT----EEEEE
T ss_pred CCCEEEEEeccccCCCCCCE------EEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCC----CEEEE
Q ss_pred eecCCCCceeEEEEe-ecccccCCcceeeeEEEEeecCCCEEEEEEcC---------------cEEEEEECCCCcEEEE
Q 040444 288 KEYGLKESWSKMFSI-DRCRSISSFRFLRPLICSNEDGGDKVLLEVNG---------------EKLVWYDWKRKKLKTV 350 (409)
Q Consensus 288 ~~~~~~~~W~~~~~I-~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~---------------~~l~~yd~~~~~~~~v 350 (409)
+. . -+...+ .............-+.+.+ +|...+..... ..|+.||++ ++++.+
T Consensus 98 d~----~--g~~~~~~~~~~~~~~~~~~~~i~~d~--~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~ 167 (314)
T 1pjx_A 98 QT----D--GTFEEIAKKDSEGRRMQGCNDCAFDY--EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV 167 (314)
T ss_dssp ET----T--SCEEECCSBCTTSCBCBCCCEEEECT--TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE
T ss_pred eC----C--CCEEEEEeccCCCccccCCcCEEECC--CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe
No 162
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=27.47 E-value=2.8e+02 Score=23.43 Aligned_cols=67 Identities=16% Similarity=0.252 Sum_probs=38.5
Q ss_pred cccceEEEeeCCccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceec
Q 040444 94 SCNGLLALSNSDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEY 173 (409)
Q Consensus 94 sc~GLl~l~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~ 173 (409)
|.+|+|... .++.+.|||..|++...+-..... ......+.+.+.. +|-+.. . .+-
T Consensus 34 S~~~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~--------~~~V~~v~~~~~~-~~l~sg--s------------~Dg 89 (318)
T 4ggc_A 34 SSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQP--------GEYISSVAWIKEG-NYLAVG--T------------SSA 89 (318)
T ss_dssp CTTSEEEEE-ETTEEEEEETTTCCEEEEEECCST--------TCCEEEEEECTTS-SEEEEE--E------------TTS
T ss_pred CCCCEEEEE-eCCEEEEEECCCCCEEEEEEecCC--------CCeEEEEEECCCC-CEEEEE--E------------CCC
Confidence 567776655 367899999999987654321111 2234556666543 332222 1 123
Q ss_pred EEEEEEcCCCc
Q 040444 174 EVKVFSLKNRS 184 (409)
Q Consensus 174 ~~~vyss~t~~ 184 (409)
.+.+++..++.
T Consensus 90 ~v~iw~~~~~~ 100 (318)
T 4ggc_A 90 EVQLWDVQQQK 100 (318)
T ss_dssp EEEEEETTTTE
T ss_pred cEEEeecCCce
Confidence 67788887764
No 163
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=26.37 E-value=93 Score=23.82 Aligned_cols=42 Identities=5% Similarity=-0.219 Sum_probs=25.1
Q ss_pred cEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEee---ecCCCCEEEEEEE
Q 040444 107 DIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGH---DLVSDDYKVVRMV 157 (409)
Q Consensus 107 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~---d~~~~~ykVv~~~ 157 (409)
.+++.||.|+.|...-.. . .....+.+.+ |...+.|+|+...
T Consensus 21 ~Vm~~D~~~~~W~p~~~g--~-------ls~v~v~~~~~~~d~~~~~yrI~~~~ 65 (126)
T 2jp2_A 21 VVMTRDDSSGGWFPQEGG--G-------ISRVGVCKVMHPEGNGRSGFLIHGER 65 (126)
T ss_dssp EEEEECTTSSSSEECSCC--S-------CEEEEEECCBCTTCSSCBCEEEEEEE
T ss_pred EEeeEcCCCCCEeeCCCC--C-------cccEEEEEecCCCCCCCCEEEEEEEE
Confidence 578899999987544321 1 0122233333 5567789998875
No 164
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=26.35 E-value=3.1e+02 Score=23.52 Aligned_cols=105 Identities=13% Similarity=0.014 Sum_probs=54.2
Q ss_pred EEEEEECCCcce----eeecCCCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccc--
Q 040444 234 LIVAFDLGLEEF----RLLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRS-- 307 (409)
Q Consensus 234 ~Il~fDl~~e~~----~~i~lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~-- 307 (409)
.|..+|+.+.+. ..++... .. ..+ ...-+|+..++.......+.+|-++. ........+.....
T Consensus 199 ~v~v~d~~~~~~~~~~~~~~~~~-~~----~~~-~~spdg~~l~v~~~~~~~i~~~d~~~----~~~~~~~~~~~~~~~~ 268 (331)
T 3u4y_A 199 SIGILETQNPENITLLNAVGTNN-LP----GTI-VVSRDGSTVYVLTESTVDVFNFNQLS----GTLSFVKSFGHGLLID 268 (331)
T ss_dssp EEEEEECSSTTSCEEEEEEECSS-CC----CCE-EECTTSSEEEEECSSEEEEEEEETTT----TEEEEEEEEECCCCCC
T ss_pred eEEEEECCCCcccceeeeccCCC-CC----ceE-EECCCCCEEEEEEcCCCEEEEEECCC----CceeeecccccccccC
Confidence 599999987664 2333322 11 111 12236664344433333666665442 22333333332200
Q ss_pred cCCcceeeeEEEEeecCCCEEEEEEc-CcEEEEEECCCCcEEEE
Q 040444 308 ISSFRFLRPLICSNEDGGDKVLLEVN-GEKLVWYDWKRKKLKTV 350 (409)
Q Consensus 308 ~~~~~~~~p~~~~~~~~~~~ill~~~-~~~l~~yd~~~~~~~~v 350 (409)
.........+++.+ +|..+++... ++.+..||+.++....+
T Consensus 269 ~~~~~~~~~~~~sp--dg~~l~v~~~~~~~v~v~d~~~~~~~~~ 310 (331)
T 3u4y_A 269 PRPLFGANQMALNK--TETKLFISANISRELKVFTISGKVVGYV 310 (331)
T ss_dssp CGGGTTCCCEEECT--TSSEEEEEETTTTEEEEEETTSCEEEEC
T ss_pred CCCcccccceEECC--CCCEEEEecCCCCcEEEEEecCCcccce
Confidence 00011113367877 8888877655 45799999999887655
No 165
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=26.32 E-value=4.6e+02 Score=25.47 Aligned_cols=117 Identities=9% Similarity=-0.002 Sum_probs=62.1
Q ss_pred CCeEEEEeecCCCCCCccEEEEEECCCcceeeecCCCCCCCCCCc---eEEEEEe-CCeEEEEEecCCCeEEEEEEeecC
Q 040444 216 NGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDF---VLDVGAL-EGHMCLMCNYDLVKVDVWMMKEYG 291 (409)
Q Consensus 216 ~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~---~~~L~~~-~G~L~~~~~~~~~~~~IW~l~~~~ 291 (409)
+|.+|+....+. ...|..+|+.+.++..+..-........+ ...+... +|++.+.... ....||.++-.+
T Consensus 252 dg~l~~~~~~~~----~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~d~~~ 325 (662)
T 3azo_A 252 DGSLIVATDRTG----WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK--GAAVLGILDPES 325 (662)
T ss_dssp TSCEEEEECTTS----SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS--SSCEEEEEETTT
T ss_pred CCeEEEEECCCC----CeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc--CccEEEEEECCC
Confidence 788887665432 23599999977766553211101100000 0123333 6777666655 589999998533
Q ss_pred CCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEc-C---cEEEEEECCCCcEEEEE
Q 040444 292 LKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVN-G---EKLVWYDWKRKKLKTVK 351 (409)
Q Consensus 292 ~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~-~---~~l~~yd~~~~~~~~v~ 351 (409)
.. ...+... ......+. .. +++.+++... . ..++.+|+.+++.+.+.
T Consensus 326 --~~---~~~l~~~-----~~~~~~~~-s~--~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~ 376 (662)
T 3azo_A 326 --GE---LVDAAGP-----WTEWAATL-TV--SGTRAVGVAASPRTAYEVVELDTVTGRARTIG 376 (662)
T ss_dssp --TE---EEECCSS-----CCEEEEEE-EE--ETTEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred --Cc---EEEecCC-----CCeEEEEE-ec--CCCEEEEEEcCCCCCCEEEEEECCCCceEEee
Confidence 22 2333321 11223331 33 4555555432 2 25888999999887763
No 166
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=26.15 E-value=3.3e+02 Score=23.73 Aligned_cols=90 Identities=12% Similarity=0.185 Sum_probs=0.0
Q ss_pred CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcE
Q 040444 268 EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKL 347 (409)
Q Consensus 268 ~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~ 347 (409)
+|.+.+....+. .+.||-+.+.+ ..+.....+.-.... ..-+.+.+ ++..|+-...++.+..||..++..
T Consensus 118 ~g~~las~s~D~-~v~iwd~~~~~--~~~~~~~~~~~h~~~-----v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~ 187 (330)
T 2hes_X 118 DGYYLATCSRDK-SVWIWETDESG--EEYECISVLQEHSQD-----VKHVIWHP--SEALLASSSYDDTVRIWKDYDDDW 187 (330)
T ss_dssp TSCEEEEEETTS-CEEEEECCTTC--CCCEEEEEECCCSSC-----EEEEEECS--SSSEEEEEETTSCEEEEEEETTEE
T ss_pred CCCEEEEEeCCC-EEEEEeccCCC--CCeEEEEEeccCCCc-----eEEEEECC--CCCEEEEEcCCCeEEEEECCCCCe
Q ss_pred EEEE-EeCCCCceeEeEEEec
Q 040444 348 KTVK-IDGGPDSFVACICVES 367 (409)
Q Consensus 348 ~~v~-~~~~~~~~~~~~y~eS 367 (409)
+.+. +.+-........+.+.
T Consensus 188 ~~~~~~~~h~~~v~~~~~~~~ 208 (330)
T 2hes_X 188 ECVAVLNGHEGTVWSSDFDKT 208 (330)
T ss_dssp EEEEEECCCSSCEEEEEECCS
T ss_pred eEEEEccCCCCcEEEEEecCC
No 167
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=25.91 E-value=5.2e+02 Score=26.02 Aligned_cols=207 Identities=10% Similarity=0.108 Sum_probs=97.6
Q ss_pred cceEEEeeCCccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEE
Q 040444 96 NGLLALSNSDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEV 175 (409)
Q Consensus 96 ~GLl~l~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~ 175 (409)
+|-|-+......+..+||.|+++..++..+....... ......++..|... . +++++.. ...+
T Consensus 367 ~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l--~~~~v~~i~~d~~g-~--~lWigt~------------~~Gl 429 (795)
T 4a2l_A 367 DKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGI--GSNNIKAVYVDEKK-S--LVYIGTH------------AGGL 429 (795)
T ss_dssp TSCEEEEESSSCEEEECTTTCCEEEECCC------CC--SCSCEEEEEEETTT-T--EEEEEET------------TTEE
T ss_pred CCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCC--CCccEEEEEEcCCC-C--EEEEEeC------------cCce
Confidence 5555554444467888888887776653221000000 01223444444322 1 1333211 1356
Q ss_pred EEEEcCCCceEEccccCcccccceeeeeeeeecccceEEE--CCeEEEEeecCCCCCCccEEEEEECCCcceeeecCCC-
Q 040444 176 KVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYV--NGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPN- 252 (409)
Q Consensus 176 ~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~- 252 (409)
..|+..++.++....... ......-.++.. +|.+ |++... + |..||..+.+|..+....
T Consensus 430 ~~~d~~~~~~~~~~~~~~----------~l~~~~v~~i~~d~~g~l-wigt~~-G------l~~~~~~~~~~~~~~~~~~ 491 (795)
T 4a2l_A 430 SILHRNSGQVENFNQRNS----------QLVNENVYAILPDGEGNL-WLGTLS-A------LVRFNPEQRSFTTIEKEKD 491 (795)
T ss_dssp EEEETTTCCEEEECTTTS----------CCSCSCEEEEEECSSSCE-EEEESS-C------EEEEETTTTEEEECCBCTT
T ss_pred eEEeCCCCcEEEeecCCC----------CcCCCeeEEEEECCCCCE-EEEecC-c------eeEEeCCCCeEEEcccccc
Confidence 678888877766542110 000001112333 3554 666542 2 999999999988765431
Q ss_pred -CCCCCCCceEEEEE-eCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEE
Q 040444 253 -YGAREKDFVLDVGA-LEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLL 330 (409)
Q Consensus 253 -~~~~~~~~~~~L~~-~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill 330 (409)
... ....-..+.+ .+|.|.+... . .+-.|..+. ..+ . +...... .........++... ..+.|.+
T Consensus 492 ~~~~-~~~~i~~i~~d~~g~lWigt~-~--Gl~~~~~~~----~~~-~-~~~~~~~--~~l~~~~i~~i~~d-~~g~lWi 558 (795)
T 4a2l_A 492 GTPV-VSKQITTLFRDSHKRLWIGGE-E--GLSVFKQEG----LDI-Q-KASILPV--SNVTKLFTNCIYEA-SNGIIWV 558 (795)
T ss_dssp CCBC-CCCCEEEEEECTTCCEEEEES-S--CEEEEEEET----TEE-E-ECCCSCS--CGGGGSCEEEEEEC-TTSCEEE
T ss_pred cccc-CCceEEEEEECCCCCEEEEeC-C--ceEEEeCCC----CeE-E-EecCCCC--CCCCCCeeEEEEEC-CCCCEEE
Confidence 011 1111123333 3677877664 2 343343332 233 1 1100000 00111122333331 3356888
Q ss_pred EEcCcEEEEEECCCCcEEEEE
Q 040444 331 EVNGEKLVWYDWKRKKLKTVK 351 (409)
Q Consensus 331 ~~~~~~l~~yd~~~~~~~~v~ 351 (409)
.+.. .|+.||+++++++.+.
T Consensus 559 gT~~-Gl~~~d~~~~~~~~~~ 578 (795)
T 4a2l_A 559 GTRE-GFYCFNEKDKQIKRYN 578 (795)
T ss_dssp EESS-CEEEEETTTTEEEEEC
T ss_pred EeCC-CceeECCCCCcEEEeC
Confidence 8776 5999999999887653
No 168
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=25.06 E-value=3.9e+02 Score=24.20 Aligned_cols=70 Identities=11% Similarity=0.025 Sum_probs=43.7
Q ss_pred CCeEEEEEecCC------CeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCC-EEEEEE-cCcEEEE
Q 040444 268 EGHMCLMCNYDL------VKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGD-KVLLEV-NGEKLVW 339 (409)
Q Consensus 268 ~G~L~~~~~~~~------~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~-~ill~~-~~~~l~~ 339 (409)
+++|++...... ..=+||+++- .....+.+|+... ....+.+.+ +|. .++... .++.|..
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~----~t~~vv~~i~~g~------~p~~i~~s~--Dg~~~l~v~~~~~~~V~V 345 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTG----LVGQTSSQISLGH------DVDAISVAQ--DGGPDLYALSAGTEVLHI 345 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEEC----CCCEEEEEEECCC------CcCeEEECC--CCCeEEEEEcCCCCeEEE
Confidence 456666554211 1246888874 3466777786643 124567777 777 455543 3567999
Q ss_pred EECCCCcEEE
Q 040444 340 YDWKRKKLKT 349 (409)
Q Consensus 340 yd~~~~~~~~ 349 (409)
||.++.+...
T Consensus 346 iD~~t~~vv~ 355 (373)
T 2mad_H 346 YDAGAGDQDQ 355 (373)
T ss_pred EECCCCCEEe
Confidence 9999988754
No 169
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=24.96 E-value=4e+02 Score=24.36 Aligned_cols=103 Identities=16% Similarity=-0.032 Sum_probs=52.9
Q ss_pred EEEEECCCcceeeecCCCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeeccccc------
Q 040444 235 IVAFDLGLEEFRLLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSI------ 308 (409)
Q Consensus 235 Il~fDl~~e~~~~i~lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~------ 308 (409)
|..+|+.+.+....-+.. . ...-..+.-.+|.+.+.... ...+.||-++.. .....+......
T Consensus 222 i~vwd~~~~~~~~~~~~~--h--~~~v~~~~~sd~~~l~s~~~-d~~v~vwd~~~~------~~~~~~~~~~~~~~~~~~ 290 (450)
T 2vdu_B 222 IKISHYPQCFIVDKWLFG--H--KHFVSSICCGKDYLLLSAGG-DDKIFAWDWKTG------KNLSTFDYNSLIKPYLND 290 (450)
T ss_dssp EEEEEESCTTCEEEECCC--C--SSCEEEEEECSTTEEEEEES-SSEEEEEETTTC------CEEEEEECHHHHGGGCCT
T ss_pred EEEEECCCCceeeeeecC--C--CCceEEEEECCCCEEEEEeC-CCeEEEEECCCC------cEeeeecchhhhhhhhhh
Confidence 888898766543221211 1 11111222226766555554 349999987641 233333321100
Q ss_pred --------------CCcceeeeEEEEeecCCCEEEEEE-cCcEEEEEEC--CC-CcEEEE
Q 040444 309 --------------SSFRFLRPLICSNEDGGDKVLLEV-NGEKLVWYDW--KR-KKLKTV 350 (409)
Q Consensus 309 --------------~~~~~~~p~~~~~~~~~~~ill~~-~~~~l~~yd~--~~-~~~~~v 350 (409)
.......-+.+.+ ++..|+... .++.+..||+ .+ ++++.+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~ 348 (450)
T 2vdu_B 291 QHLAPPRFQNENNDIIEFAVSKIIKSK--NLPFVAFFVEATKCIIILEMSEKQKGDLALK 348 (450)
T ss_dssp TSBC----------CBCCCEEEEEECS--SSSEEEEEETTCSEEEEEEECSSSTTCEEEE
T ss_pred cccccccccccccccceEEEEEEEEeC--CCCEEEEEECCCCeEEEEEeccCCCCceeec
Confidence 0001234456666 777777776 5677999999 44 344444
No 170
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=24.96 E-value=1.4e+02 Score=24.16 Aligned_cols=39 Identities=13% Similarity=0.214 Sum_probs=27.6
Q ss_pred cEEEEccccc-ceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEE
Q 040444 107 DIALFNPATR-QLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMV 157 (409)
Q Consensus 107 ~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~ 157 (409)
.+++.||.|+ .|...-. ....+.+-+|...+.|+|+.+.
T Consensus 17 ~Vm~~D~~tk~~WvP~g~------------~~~~V~i~~d~~rnsyRIvg~~ 56 (168)
T 1i2h_A 17 HVFQIDPNTKKNWVPTSK------------HAVTVSYFYDSTRNVYRIISLD 56 (168)
T ss_dssp EEEEECTTSSCCSEESCS------------SCEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEECCCCCCceeecCC------------CCeEEEEEEcCCCCEEEEEEcc
Confidence 5889999997 8854322 1124566689888889998864
No 171
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=24.72 E-value=4e+02 Score=24.31 Aligned_cols=100 Identities=10% Similarity=0.058 Sum_probs=61.7
Q ss_pred EEEEE--ECCCcceeeecC---C--CCCCCCCCceEEEEEe--CCeEEEEEecCCCeEEEEEEeecCCC-CceeEEEEee
Q 040444 234 LIVAF--DLGLEEFRLLPQ---P--NYGAREKDFVLDVGAL--EGHMCLMCNYDLVKVDVWMMKEYGLK-ESWSKMFSID 303 (409)
Q Consensus 234 ~Il~f--Dl~~e~~~~i~l---P--~~~~~~~~~~~~L~~~--~G~L~~~~~~~~~~~~IW~l~~~~~~-~~W~~~~~I~ 303 (409)
.|..| |..+.++..+.- | . .. ...+.+.+... .|+++++...+...+..|.+.+.+.. ..=.++.++.
T Consensus 100 ~l~vf~iDp~~~~l~~i~~~~~pv~t-~~-~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~ 177 (355)
T 3amr_A 100 TIEIYAIDGKNGTLQSMTDPDHPIAT-AI-NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK 177 (355)
T ss_dssp EEEEEEECTTTCCEEECSCTTSCEEC-CC-SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred eEEEEEECCCCCceeeccccccCcCC-CC-CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence 46666 557777887733 4 2 22 23333344333 57777777766679999999875422 1224456666
Q ss_pred cccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECC
Q 040444 304 RCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWK 343 (409)
Q Consensus 304 ~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~ 343 (409)
+.. .|-++...+..+.||+...+..|..||.+
T Consensus 178 lgs--------q~EgcvvDd~~g~Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 178 MNS--------QTEGMAADDEYGRLYIAEEDEAIWKFSAE 209 (355)
T ss_dssp CSS--------CEEEEEEETTTTEEEEEETTTEEEEEECS
T ss_pred CCC--------CcceEEEcCCCCeEEEecccceEEEEeCC
Confidence 532 34455443367899998877779999955
No 172
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=24.56 E-value=4e+02 Score=24.15 Aligned_cols=65 Identities=17% Similarity=0.299 Sum_probs=38.6
Q ss_pred CeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCcE
Q 040444 269 GHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKL 347 (409)
Q Consensus 269 G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~~ 347 (409)
|.+.+.... ...+.||-+... .....+.-. .....-+.+.+ +|..|+-...++.+..||+++++.
T Consensus 308 g~~l~sgs~-D~~i~iwd~~~~------~~~~~~~~h-----~~~v~~v~~~~--~g~~l~s~s~D~~i~vwd~~~~~~ 372 (410)
T 1vyh_C 308 GPFLLSGSR-DKTIKMWDVSTG------MCLMTLVGH-----DNWVRGVLFHS--GGKFILSCADDKTLRVWDYKNKRC 372 (410)
T ss_dssp CCEEEEEET-TSEEEEEETTTT------EEEEEEECC-----SSCEEEEEECS--SSSCEEEEETTTEEEEECCTTSCC
T ss_pred CCEEEEEeC-CCeEEEEECCCC------ceEEEEECC-----CCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCce
Confidence 444444443 448999987631 223333211 12244566766 667676666778899999988763
No 173
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=24.33 E-value=5.1e+02 Score=25.41 Aligned_cols=120 Identities=17% Similarity=0.107 Sum_probs=58.6
Q ss_pred cceEEECCeEEEEee-cCCCCCCccEEEEEEC-CCc--ceeee-cCCCCCCC----CCCceEEEEE--eCCe----EEEE
Q 040444 210 GYGVYVNGVVHWVSP-RRPEFGIGNLIVAFDL-GLE--EFRLL-PQPNYGAR----EKDFVLDVGA--LEGH----MCLM 274 (409)
Q Consensus 210 ~~~v~~~G~lywl~~-~~~~~~~~~~Il~fDl-~~e--~~~~i-~lP~~~~~----~~~~~~~L~~--~~G~----L~~~ 274 (409)
..++..+|.+|.... .. .|.++|. .+. .|+.- ..+. ... .+.....+.. .+|. |++.
T Consensus 56 ~tP~v~~g~vyv~~~~~~-------~v~AlD~~~tG~~lW~~~~~~~~-~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~ 127 (599)
T 1w6s_A 56 GAPLVVDGKMYIHTSFPN-------NTFALGLDDPGTILWQDKPKQNP-AARAVACCDLVNRGLAYWPGDGKTPALILKT 127 (599)
T ss_dssp SCCEEETTEEEEECSTTT-------CEEEEETTCTTSEEEEECCCCCG-GGGGGCSSCSCCCCCEEECCCSSSCCEEEEE
T ss_pred eccEEECCEEEEEeCCCC-------EEEEEeCCCCCcEEEEECCCCCc-cccccccccccccceEEEecCCcceeEEEEE
Confidence 456788999998765 33 3999999 654 46541 1111 000 0000011233 4555 5544
Q ss_pred EecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEc------CcEEEEEECCCCcEE
Q 040444 275 CNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVN------GEKLVWYDWKRKKLK 348 (409)
Q Consensus 275 ~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~------~~~l~~yd~~~~~~~ 348 (409)
.... .|..|+-...+..|.... .-.. ........|+.. + +.|++... +..|+.||.+|++..
T Consensus 128 t~dg----~l~AlDa~TG~~~W~~~~--~~~~-~~~~~~ssP~v~----~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~ 195 (599)
T 1w6s_A 128 QLDG----NVAALNAETGETVWKVEN--SDIK-VGSTLTIAPYVV----K-DKVIIGSSGAELGVRGYLTAYDVKTGEQV 195 (599)
T ss_dssp CTTS----EEEEEETTTCCEEEEEEC--CCGG-GTCBCCSCCEEE----T-TEEEECCBCGGGTCCCEEEEEETTTCCEE
T ss_pred cCCC----EEEEEECCCCCEEEeecC--CCCC-ccceeecCCEEE----C-CEEEEEecccccCCCCeEEEEECCCCcEE
Confidence 3211 344454222245675431 1100 000111234432 3 56776542 457999999999876
Q ss_pred E
Q 040444 349 T 349 (409)
Q Consensus 349 ~ 349 (409)
.
T Consensus 196 W 196 (599)
T 1w6s_A 196 W 196 (599)
T ss_dssp E
T ss_pred E
Confidence 5
No 174
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=24.21 E-value=3.2e+02 Score=22.90 Aligned_cols=112 Identities=8% Similarity=0.021 Sum_probs=58.1
Q ss_pred CCeEEEEeecCCCCCCccEEEEEECCCcceeeecCCCCCCCCCCceEEEEEe--CCeEEEEEecCCCeEEEEEEeecCCC
Q 040444 216 NGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDFVLDVGAL--EGHMCLMCNYDLVKVDVWMMKEYGLK 293 (409)
Q Consensus 216 ~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~~L~~~--~G~L~~~~~~~~~~~~IW~l~~~~~~ 293 (409)
+|.+||..... ..|..+|+....-..+ .+. +. .. . ..+... +|.|+++..... .-.|+++.-.+.
T Consensus 90 ~~~lyv~d~~~------~~I~~~~~~g~~~~~~-~~~-~~-~~-P-~~i~vd~~~g~lyv~~~~~~-~~~I~~~~~dg~- 156 (267)
T 1npe_A 90 GRTIFWTDSQL------DRIEVAKMDGTQRRVL-FDT-GL-VN-P-RGIVTDPVRGNLYWTDWNRD-NPKIETSHMDGT- 156 (267)
T ss_dssp TTEEEEEETTT------TEEEEEETTSCSCEEE-ECS-SC-SS-E-EEEEEETTTTEEEEEECCSS-SCEEEEEETTSC-
T ss_pred CCeEEEEECCC------CEEEEEEcCCCCEEEE-EEC-CC-CC-c-cEEEEeeCCCEEEEEECCCC-CcEEEEEecCCC-
Confidence 57999976543 2599999976543332 222 11 11 1 134433 688888765421 223444443231
Q ss_pred CceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEc-CcEEEEEECCCCcEEEE
Q 040444 294 ESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVN-GEKLVWYDWKRKKLKTV 350 (409)
Q Consensus 294 ~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~-~~~l~~yd~~~~~~~~v 350 (409)
-.+. +... .......+++.+ +++.|++... ...+..+|+.+...+.+
T Consensus 157 --~~~~--~~~~----~~~~P~gia~d~--~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 204 (267)
T 1npe_A 157 --NRRI--LAQD----NLGLPNGLTFDA--FSSQLCWVDAGTHRAECLNPAQPGRRKV 204 (267)
T ss_dssp --CCEE--EECT----TCSCEEEEEEET--TTTEEEEEETTTTEEEEEETTEEEEEEE
T ss_pred --CcEE--EEEC----CCCCCcEEEEcC--CCCEEEEEECCCCEEEEEecCCCceEEE
Confidence 1111 1111 111233455555 6778887754 35799999987655443
No 175
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=24.19 E-value=5.4e+02 Score=25.58 Aligned_cols=94 Identities=7% Similarity=0.090 Sum_probs=52.8
Q ss_pred EEEEEECCCcce-eeecCCCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcc
Q 040444 234 LIVAFDLGLEEF-RLLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFR 312 (409)
Q Consensus 234 ~Il~fDl~~e~~-~~i~lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~ 312 (409)
.|..+|+.+.+. ..+.... . ....--..-+|.+.++... ...+.||.++.. . ....+... ..
T Consensus 36 ~v~iwd~~~~~~~~~~~~~~-~----~v~~~~~s~~~~~l~~~~~-dg~i~vw~~~~~----~--~~~~~~~~-----~~ 98 (814)
T 3mkq_A 36 RVEIWNYETQVEVRSIQVTE-T----PVRAGKFIARKNWIIVGSD-DFRIRVFNYNTG----E--KVVDFEAH-----PD 98 (814)
T ss_dssp EEEEEETTTTEEEEEEECCS-S----CEEEEEEEGGGTEEEEEET-TSEEEEEETTTC----C--EEEEEECC-----SS
T ss_pred EEEEEECCCCceEEEEecCC-C----cEEEEEEeCCCCEEEEEeC-CCeEEEEECCCC----c--EEEEEecC-----CC
Confidence 488888876543 2233222 1 1111112225555444444 349999987641 1 22233211 12
Q ss_pred eeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCc
Q 040444 313 FLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKK 346 (409)
Q Consensus 313 ~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~ 346 (409)
....+.+.+ ++..|+....++.+..||++++.
T Consensus 99 ~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~ 130 (814)
T 3mkq_A 99 YIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNW 130 (814)
T ss_dssp CEEEEEECS--SSSEEEEEETTSEEEEEEGGGTS
T ss_pred CEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCc
Confidence 345677777 77777777777789999998873
No 176
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=24.06 E-value=3.5e+02 Score=23.34 Aligned_cols=68 Identities=15% Similarity=0.156 Sum_probs=39.1
Q ss_pred CeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCC
Q 040444 269 GHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKR 344 (409)
Q Consensus 269 G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~ 344 (409)
|.+.++... ...+.||-++... ........+..... .....-+.+.+ ++..|+....++.+..||+.+
T Consensus 299 ~~~l~~~~~-dg~i~vwd~~~~~--~~~~~~~~~~~~~~---~~~v~~~~~s~--~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 299 QKMLALGNQ-VGKLYVWDLEVED--PHKAKCTTLTHHKC---GAAIRQTSFSR--DSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp SSEEEEECT-TSCEEEEECCSSS--GGGCEEEEECCTTC---CSCEEEEEECT--TSSEEEEEETTSEEEEEEC--
T ss_pred CcEEEEEec-CCcEEEEECCCCC--CccccceEEccccc---CCceEEEEeCC--CCCeEEEEeCCCEEEEEEecC
Confidence 565554443 4489999988532 11223333332110 12244567777 777777777778899999864
No 177
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=23.97 E-value=3.9e+02 Score=23.92 Aligned_cols=97 Identities=13% Similarity=0.174 Sum_probs=49.4
Q ss_pred EEEEEECCCcceee-ecCCCCCCCCCCceEEEEEe--CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeeccc--cc
Q 040444 234 LIVAFDLGLEEFRL-LPQPNYGAREKDFVLDVGAL--EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCR--SI 308 (409)
Q Consensus 234 ~Il~fDl~~e~~~~-i~lP~~~~~~~~~~~~L~~~--~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~--~~ 308 (409)
.|..+|+.+.+... +.... .. ..+... +|.+.++...+ ..+.||-++.. .....+.... ..
T Consensus 188 ~v~iwd~~~~~~~~~~~~~~------~v-~~~~~~~~~~~~l~~~s~d-~~v~iwd~~~~------~~~~~~~~~~~~~~ 253 (393)
T 1erj_A 188 TVRIWDLRTGQCSLTLSIED------GV-TTVAVSPGDGKYIAAGSLD-RAVRVWDSETG------FLVERLDSENESGT 253 (393)
T ss_dssp EEEEEETTTTEEEEEEECSS------CE-EEEEECSTTCCEEEEEETT-SCEEEEETTTC------CEEEEEC------C
T ss_pred cEEEEECCCCeeEEEEEcCC------Cc-EEEEEECCCCCEEEEEcCC-CcEEEEECCCC------cEEEeecccccCCC
Confidence 48888988765433 22221 11 122222 56665555544 48999976531 1222222110 01
Q ss_pred CCcceeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCc
Q 040444 309 SSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKK 346 (409)
Q Consensus 309 ~~~~~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~ 346 (409)
+......-+.+.+ +|..|+....++.+..||+++..
T Consensus 254 ~h~~~v~~v~~~~--~g~~l~s~s~d~~v~~wd~~~~~ 289 (393)
T 1erj_A 254 GHKDSVYSVVFTR--DGQSVVSGSLDRSVKLWNLQNAN 289 (393)
T ss_dssp CCSSCEEEEEECT--TSSEEEEEETTSEEEEEEC----
T ss_pred CCCCCEEEEEECC--CCCEEEEEeCCCEEEEEECCCCC
Confidence 1112344567777 77777766677889999997643
No 178
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=23.88 E-value=3.7e+02 Score=23.54 Aligned_cols=76 Identities=9% Similarity=0.032 Sum_probs=44.1
Q ss_pred CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcC--cEEEEEEC--C
Q 040444 268 EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNG--EKLVWYDW--K 343 (409)
Q Consensus 268 ~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~--~~l~~yd~--~ 343 (409)
+|+..++.......+.+|.++. ........+..... ......-+.+.+ +|..+++.... ..+..|++ .
T Consensus 221 dg~~l~v~~~~~~~v~v~~~~~----g~~~~~~~~~~~~~--~~~~~~~i~~sp--dg~~l~v~~~~~~~~i~v~~~~~~ 292 (361)
T 3scy_A 221 DGKFAYLINEIGGTVIAFRYAD----GMLDEIQTVAADTV--NAQGSGDIHLSP--DGKYLYASNRLKADGVAIFKVDET 292 (361)
T ss_dssp TSSEEEEEETTTCEEEEEEEET----TEEEEEEEEESCSS--CCCCEEEEEECT--TSSEEEEEECSSSCEEEEEEECTT
T ss_pred CCCEEEEEcCCCCeEEEEEecC----CceEEeEEEecCCC--CCCCcccEEECC--CCCEEEEECCCCCCEEEEEEEcCC
Confidence 6765444444445899999883 23555555543211 111224567777 87777766543 56888777 4
Q ss_pred CCcEEEEE
Q 040444 344 RKKLKTVK 351 (409)
Q Consensus 344 ~~~~~~v~ 351 (409)
+++++.+.
T Consensus 293 ~g~~~~~~ 300 (361)
T 3scy_A 293 NGTLTKVG 300 (361)
T ss_dssp TCCEEEEE
T ss_pred CCcEEEee
Confidence 67776653
No 179
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=23.27 E-value=2.7e+02 Score=25.20 Aligned_cols=73 Identities=8% Similarity=0.160 Sum_probs=40.8
Q ss_pred CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCC-CEEEEEEcCcEEEEEECCCCc
Q 040444 268 EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGG-DKVLLEVNGEKLVWYDWKRKK 346 (409)
Q Consensus 268 ~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~-~~ill~~~~~~l~~yd~~~~~ 346 (409)
+|.+.+.. . ...+.||-++..+ ..+. ...+.............-+.+.+ ++ ..++....++.+..||+++++
T Consensus 188 ~~~~l~s~-~-d~~i~iwd~~~~~--~~~~-~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~dg~i~iwd~~~~~ 260 (447)
T 3dw8_B 188 DYETYLSA-D-DLRINLWHLEITD--RSFN-IVDIKPANMEELTEVITAAEFHP--NSCNTFVYSSSKGTIRLCDMRASA 260 (447)
T ss_dssp TSSEEEEE-C-SSEEEEEETTEEE--EEEE-EEECCCSSGGGCCCCEEEEEECS--SCTTEEEEEETTSCEEEEETTTCS
T ss_pred CCCEEEEe-C-CCeEEEEECCCCC--ceee-eeecccccccccCcceEEEEECC--CCCcEEEEEeCCCeEEEEECcCCc
Confidence 55555554 3 4599999887421 1111 11111111111122345567777 66 666666777789999998876
Q ss_pred E
Q 040444 347 L 347 (409)
Q Consensus 347 ~ 347 (409)
.
T Consensus 261 ~ 261 (447)
T 3dw8_B 261 L 261 (447)
T ss_dssp S
T ss_pred c
Confidence 3
No 180
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=23.23 E-value=3.9e+02 Score=23.62 Aligned_cols=92 Identities=8% Similarity=-0.035 Sum_probs=45.5
Q ss_pred EEEEECCCcceee-ecCCCCCCCCCCceEEEEEe-CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcc
Q 040444 235 IVAFDLGLEEFRL-LPQPNYGAREKDFVLDVGAL-EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFR 312 (409)
Q Consensus 235 Il~fDl~~e~~~~-i~lP~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~ 312 (409)
|..+|+.+.+... +.... ... ..+.-. +|.-.++....+..+.||-++. . .....+.. ..
T Consensus 251 i~~wd~~~~~~~~~~~~~~-----~~v-~~l~~sp~~~~~lasgs~D~~i~iwd~~~----~--~~~~~~~H------~~ 312 (357)
T 4g56_B 251 VSLVNIKNPDSAQTSAVHS-----QNI-TGLAYSYHSSPFLASISEDCTVAVLDADF----S--EVFRDLSH------RD 312 (357)
T ss_dssp EEEEESSCGGGCEEECCCS-----SCE-EEEEECSSSSCCEEEEETTSCEEEECTTS----C--EEEEECCC------SS
T ss_pred eeEEECCCCcEeEEEeccc-----eeE-EEEEEcCCCCCEEEEEeCCCEEEEEECCC----C--cEeEECCC------CC
Confidence 8889988755322 23222 111 123322 4432333333345899996542 1 22222221 12
Q ss_pred eeeeEEEEeecCCCEEEEEEcCcEEEEEECCCC
Q 040444 313 FLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRK 345 (409)
Q Consensus 313 ~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~ 345 (409)
.+.-+++.+. ++..|+-...++.+..||+.++
T Consensus 313 ~V~~vafsP~-d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 313 FVTGVAWSPL-DHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp CEEEEEECSS-STTEEEEEETTSCEEEEECC--
T ss_pred CEEEEEEeCC-CCCEEEEEcCCCeEEEEECCCC
Confidence 2445666641 4555554556777999998664
No 181
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=22.63 E-value=3.8e+02 Score=23.22 Aligned_cols=30 Identities=7% Similarity=0.042 Sum_probs=21.0
Q ss_pred CCeEEEEeecCCCCCCccEEEEEECCCcceeeecCC
Q 040444 216 NGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQP 251 (409)
Q Consensus 216 ~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP 251 (409)
+|.++|...... .|..||..+.++..+..+
T Consensus 29 ~g~~l~v~~~~~------~i~~~~~~~~~~~~~~~~ 58 (322)
T 2fp8_A 29 TNKGFYTSVQDG------RVIKYEGPNSGFVDFAYA 58 (322)
T ss_dssp TCSSEEEECTTS------EEEEECCTTTCEEEEEES
T ss_pred CCCEEEEEcCCC------eEEEECCCCCceEEEecc
Confidence 578888765432 599999988777765443
No 182
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=22.27 E-value=3.8e+02 Score=23.18 Aligned_cols=194 Identities=11% Similarity=0.069 Sum_probs=99.7
Q ss_pred cceEEEeeC---CccEEEEcccccceec-cCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcce
Q 040444 96 NGLLALSNS---DQDIALFNPATRQLFK-LPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFV 171 (409)
Q Consensus 96 ~GLl~l~~~---~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~ 171 (409)
+|.|..... .+.+.+.++.|++... +|... .....|+..+. + ++.... . .
T Consensus 31 dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~----------~~fgeGi~~~g---~-~lyv~t---~---------~ 84 (266)
T 2iwa_A 31 NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD----------SYFGEGLTLLN---E-KLYQVV---W---------L 84 (266)
T ss_dssp TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT----------TCCEEEEEEET---T-EEEEEE---T---------T
T ss_pred CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC----------CcceEEEEEeC---C-EEEEEE---e---------c
Confidence 377666542 4689999999987664 34221 22334555553 2 333332 1 2
Q ss_pred ecEEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcc-eeeecC
Q 040444 172 EYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEE-FRLLPQ 250 (409)
Q Consensus 172 ~~~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~-~~~i~l 250 (409)
...+.||+..+.+ .+...+ +. .....++..+|.--|.+. .. ..|..+|..+.+ -..|+.
T Consensus 85 ~~~v~viD~~t~~--v~~~i~----------~g--~~~g~glt~Dg~~l~vs~-gs-----~~l~viD~~t~~v~~~I~V 144 (266)
T 2iwa_A 85 KNIGFIYDRRTLS--NIKNFT----------HQ--MKDGWGLATDGKILYGSD-GT-----SILYEIDPHTFKLIKKHNV 144 (266)
T ss_dssp CSEEEEEETTTTE--EEEEEE----------CC--SSSCCEEEECSSSEEEEC-SS-----SEEEEECTTTCCEEEEEEC
T ss_pred CCEEEEEECCCCc--EEEEEE----------CC--CCCeEEEEECCCEEEEEC-CC-----CeEEEEECCCCcEEEEEEE
Confidence 3467889987653 333332 11 012344666665444543 22 369999998744 444554
Q ss_pred CCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeeccccc--------CCcceeeeEEEEee
Q 040444 251 PNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSI--------SSFRFLRPLICSNE 322 (409)
Q Consensus 251 P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~--------~~~~~~~p~~~~~~ 322 (409)
...+....... .+...+|+|++...... +|++++- ..+.-+.+|++.... .......-+++.+
T Consensus 145 g~~~~p~~~~n-ele~~dg~lyvn~~~~~---~V~vID~----~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~- 215 (266)
T 2iwa_A 145 KYNGHRVIRLN-ELEYINGEVWANIWQTD---CIARISA----KDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQ- 215 (266)
T ss_dssp EETTEECCCEE-EEEEETTEEEEEETTSS---EEEEEET----TTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEET-
T ss_pred CCCCcccccce-eEEEECCEEEEecCCCC---eEEEEEC----CCCcEEEEEECCCcccccccccccccCceEEEEEcC-
Confidence 32000000011 23333888875553322 6777774 345667777764211 0011223456666
Q ss_pred cCCCEEEEEEc-CcEEEEEECCCC
Q 040444 323 DGGDKVLLEVN-GEKLVWYDWKRK 345 (409)
Q Consensus 323 ~~~~~ill~~~-~~~l~~yd~~~~ 345 (409)
+++.+|+... ..+++..++.+.
T Consensus 216 -~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 216 -ENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp -TTTEEEEEETTCSEEEEEEEEEC
T ss_pred -CCCEEEEECCCCCeEEEEEEecc
Confidence 7777777653 345666665443
No 183
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=22.22 E-value=2.7e+02 Score=27.55 Aligned_cols=32 Identities=3% Similarity=0.108 Sum_probs=27.3
Q ss_pred eeeeEEEEeecCCCEEEEEEcCcEEEEEECCCCc
Q 040444 313 FLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKK 346 (409)
Q Consensus 313 ~~~p~~~~~~~~~~~ill~~~~~~l~~yd~~~~~ 346 (409)
.+.-+++.+ +|..|.....++.+-.||++++.
T Consensus 131 sv~svafSP--DG~~LAsgs~DGtVkIWd~~~~~ 162 (588)
T 2j04_A 131 TYHCFEWNP--IESSIVVGNEDGELQFFSIRKNS 162 (588)
T ss_dssp CEEEEEECS--SSSCEEEEETTSEEEEEECCCCT
T ss_pred cEEEEEEcC--CCCEEEEEcCCCEEEEEECCCCc
Confidence 356788888 88888888888899999999985
No 184
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=21.74 E-value=4.2e+02 Score=23.37 Aligned_cols=89 Identities=15% Similarity=0.108 Sum_probs=46.0
Q ss_pred EEEEECCCcceee-ecCCCCCCCCCCceEEEE-EeCCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcc
Q 040444 235 IVAFDLGLEEFRL-LPQPNYGAREKDFVLDVG-ALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFR 312 (409)
Q Consensus 235 Il~fDl~~e~~~~-i~lP~~~~~~~~~~~~L~-~~~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~ 312 (409)
|-.+|+.+.+-.. +.... . ..... .+. ..+|.+.++...+ ..+.||-+... .....+.- ...
T Consensus 264 v~lwd~~~~~~~~~~~~~~--~-~~~~~-~~~~s~~g~~l~~g~~d-~~i~vwd~~~~------~~~~~l~~-----h~~ 327 (354)
T 2pbi_B 264 CRLYDLRADREVAIYSKES--I-IFGAS-SVDFSLSGRLLFAGYND-YTINVWDVLKG------SRVSILFG-----HEN 327 (354)
T ss_dssp EEEEETTTTEEEEEECCTT--C-CSCEE-EEEECTTSSEEEEEETT-SCEEEEETTTC------SEEEEECC-----CSS
T ss_pred EEEEECCCCcEEEEEcCCC--c-cccee-EEEEeCCCCEEEEEECC-CcEEEEECCCC------ceEEEEEC-----CCC
Confidence 8889988764332 22221 1 01111 122 2356665555543 48999976531 12222221 112
Q ss_pred eeeeEEEEeecCCCEEEEEEcCcEEEEEE
Q 040444 313 FLRPLICSNEDGGDKVLLEVNGEKLVWYD 341 (409)
Q Consensus 313 ~~~p~~~~~~~~~~~ill~~~~~~l~~yd 341 (409)
...-+++.+ +|..|+-...++.+..||
T Consensus 328 ~v~~l~~sp--dg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 328 RVSTLRVSP--DGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CEEEEEECT--TSSCEEEEETTSEEEEEC
T ss_pred cEEEEEECC--CCCEEEEEcCCCCEEecC
Confidence 344567777 777666666666677764
No 185
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=21.21 E-value=4e+02 Score=23.02 Aligned_cols=53 Identities=11% Similarity=0.135 Sum_probs=32.2
Q ss_pred cEEEEEECCCcceeeecCCCCCCCCCCceEEEEEeCCeEEEEEecCCCeEEEEEEe
Q 040444 233 NLIVAFDLGLEEFRLLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMK 288 (409)
Q Consensus 233 ~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~IW~l~ 288 (409)
..|..||...+....+..|. +.... ....+...+|.|++...... .+.+..++
T Consensus 260 ~~v~~~d~~G~~~~~~~~~~-g~~~~-~~~~~~~~~g~L~v~~~~~~-~i~~~~~~ 312 (322)
T 2fp8_A 260 PKGIKFDEFGNILEVIPLPP-PFAGE-HFEQIQEHDGLLYIGTLFHG-SVGILVYD 312 (322)
T ss_dssp EEEEEECTTSCEEEEEECCT-TTTTS-CCCEEEEETTEEEEECSSCS-EEEEEEC-
T ss_pred cEEEEECCCCCEEEEEECCC-CCccc-cceEEEEeCCEEEEeecCCC-ceEEEecc
Confidence 35999999887778888886 32001 11134456888888765433 55555554
No 186
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=21.14 E-value=6e+02 Score=24.99 Aligned_cols=261 Identities=10% Similarity=-0.053 Sum_probs=0.0
Q ss_pred HHhccccCCCcEEEEEecCcceeecCCCCCCCCCCCCCCCCCCCCcEEEecccceEEEee-CCccEEEEcccccc-eecc
Q 040444 44 QLNNSIATKSHLRLILKGLHLYSVELDSLDKAIPFNHYPESIWTGTEVFGSCNGLLALSN-SDQDIALFNPATRQ-LFKL 121 (409)
Q Consensus 44 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~sc~GLl~l~~-~~~~~~V~NP~T~~-~~~L 121 (409)
|.+++.+ ++.++........++.+.-.....+..+-.. .....-+...+|.|...+ ....+..+++-... ...+
T Consensus 3 ~~~~~~~---~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~-~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v 78 (619)
T 3s94_A 3 HHHHHHA---PLLLYANRRDLRLVDATNGKENATIVVGGLE-DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV 78 (619)
T ss_dssp ----------CCEEEECSSBEEEECCC---------CBCCS-CEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEE
T ss_pred ccccccC---ceEEEeccccEEEEeCCCCcceEEEEEcCCC-ceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEE
Q ss_pred CCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEEEEEcCCCceEEccccCcccccceee
Q 040444 122 PVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRSWTRVKKLPNYLRFMFQF 201 (409)
Q Consensus 122 P~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~vyss~t~~Wr~~~~~p~~~~~~~~~ 201 (409)
-... .....|+++|..++ ++++...... .+++++..+..=+.+..-.
T Consensus 79 ~~~~----------~~~P~GlAvD~~~~--~ly~~d~~~~------------~I~v~~~dG~~~~~l~~~~--------- 125 (619)
T 3s94_A 79 VVSG----------LLSPDGLACDWLGE--KLYWTDSETN------------RIEVSNLDGSLRKVLFWQE--------- 125 (619)
T ss_dssp ECSS----------CSCEEEEEEETTTT--EEEEEETTTT------------EEEEEETTSCSCEEEECSS---------
T ss_pred EeCC----------CCCcCeEEEEecCC--EEEEEeCCCC------------EEEEEECCCCCEEEEEeCC---------
Q ss_pred eeeeeecccceEEE---CCeEEEEeecCCCCCCccEEEEEECCCcceeeecCCCCCCCCCCceEEEEEeCCeEEEEEecC
Q 040444 202 YFHLLHRRGYGVYV---NGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDFVLDVGALEGHMCLMCNYD 278 (409)
Q Consensus 202 ~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~~L~~~~G~L~~~~~~~ 278 (409)
.....++.+ +|.+||....... .|..+++....-..+-... .. ....+.+-..+++|+++....
T Consensus 126 -----l~~P~~Iavdp~~g~ly~tD~g~~~-----~I~r~~~dG~~~~~l~~~~-~~--~P~Glald~~~~~LY~aD~~~ 192 (619)
T 3s94_A 126 -----LDQPRAIALDPSSGFMYWTDWGEVP-----KIERAGMDGSSRFIIINSE-IY--WPNGLTLDYEEQKLYWADAKL 192 (619)
T ss_dssp -----CSCCCCEEEETTTTEEEEEECSSSC-----EEEEEETTSCSCEEEECSS-CS--SEEEEEEETTTTEEEEEETTT
T ss_pred -----CCCCceEEEecCCCeEEEeccCCCC-----EEEEEECCCCceEEEEeCC-CC--CCcEEEEEccCCEEEEEeCCC
Q ss_pred CCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcCcE-EEEEECCCCcEEEEEEeCCCC
Q 040444 279 LVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEK-LVWYDWKRKKLKTVKIDGGPD 357 (409)
Q Consensus 279 ~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~~~-l~~yd~~~~~~~~v~~~~~~~ 357 (409)
. .||+.+-.| .....+..... ..|.++.- .++.|+....... +...|..+++...+-..+...
T Consensus 193 ~---~I~~~~~dG-----~~~~~~~~~~~------~~P~gi~~--~~~~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~ 256 (619)
T 3s94_A 193 N---FIHKSNLDG-----TNRQAVVKGSL------PHPFALTL--FEDILYWTDWSTHSILACNKYTGEGLREIHSDIFS 256 (619)
T ss_dssp C---CEEEESSSC-----CEEC---------------CCCEEE--SSSEEEEECTTTCSEEEEESSSCCCCEECCSCCCC
T ss_pred C---eEEEecCCC-----CccEEEEeCCC------CCceEEEE--eCCEEEEecCCCCEEEEEECCCCcccEEEecCCCC
Q ss_pred ceeEeEEEecccc
Q 040444 358 SFVACICVESLIP 370 (409)
Q Consensus 358 ~~~~~~y~eSlv~ 370 (409)
-....+|-+..-|
T Consensus 257 p~~i~v~~~~~qp 269 (619)
T 3s94_A 257 PMDIHAFSQQRQP 269 (619)
T ss_dssp CSEEEECCGGGSC
T ss_pred CcEEEEEccccCC
No 187
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=20.24 E-value=5.3e+02 Score=24.04 Aligned_cols=70 Identities=11% Similarity=0.095 Sum_probs=46.1
Q ss_pred CCeEEEEEecC------CCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCC-EEEEEE-cCcEEEE
Q 040444 268 EGHMCLMCNYD------LVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGD-KVLLEV-NGEKLVW 339 (409)
Q Consensus 268 ~G~L~~~~~~~------~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~-~ill~~-~~~~l~~ 339 (409)
+++|++..... ...=+||+++- ..+..+.+|+... ...-+.+.+ +|. .++... .++.|..
T Consensus 330 g~rlyVa~~~~~~gthk~~s~~VsVID~----~T~kvv~~I~vg~------~P~gia~sp--Dg~~~lyv~n~~s~~VsV 397 (426)
T 3c75_H 330 SDRIYLLVDQRDEWKHKAASRFVVVLNA----ETGERINKIELGH------EIDSINVSQ--DAEPLLYALSAGTQTLHI 397 (426)
T ss_dssp GTEEEEEEEECCTTCTTSCEEEEEEEET----TTCCEEEEEEEEE------EECEEEECC--SSSCEEEEEETTTTEEEE
T ss_pred CCEEEEEecccccccccCCCCEEEEEEC----CCCeEEEEEECCC------CcCeEEEcc--CCCEEEEEEcCCCCeEEE
Confidence 56777765421 12457899884 4577788887642 123356666 777 677665 3578999
Q ss_pred EECCCCcEEE
Q 040444 340 YDWKRKKLKT 349 (409)
Q Consensus 340 yd~~~~~~~~ 349 (409)
+|..+.++..
T Consensus 398 ID~~t~kvv~ 407 (426)
T 3c75_H 398 YDAATGEELR 407 (426)
T ss_dssp EETTTCCEEE
T ss_pred EECCCCCEEE
Confidence 9999998653
No 188
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=20.20 E-value=6e+02 Score=24.68 Aligned_cols=121 Identities=9% Similarity=-0.013 Sum_probs=0.0
Q ss_pred ccceEEECCeEEEEeecCCCCCCccEEEEEECCCcceee-ecCCCCCCCCC----CceEEEEEeCCeEEEEEecCCCeEE
Q 040444 209 RGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRL-LPQPNYGAREK----DFVLDVGALEGHMCLMCNYDLVKVD 283 (409)
Q Consensus 209 ~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~-i~lP~~~~~~~----~~~~~L~~~~G~L~~~~~~~~~~~~ 283 (409)
...++..+|.+|....... |.++|..+.+-.. ..++. ..... .....+...+|++++..... .
T Consensus 61 ~~~P~v~~g~vyv~~~~~~-------v~AlD~~tG~~~W~~~~~~-~~~~~~~~~~~~~g~a~~~~~v~~~t~dg----~ 128 (582)
T 1flg_A 61 ESQAIVSDGVIYVTASYSR-------LFALDAKTGKRLWTYNHRL-PDDIRPCCDVVNRGAAIYGDKVFFGTLDA----S 128 (582)
T ss_dssp CCCCEEETTEEEEEETTTE-------EEEEESSSCCEEEEEECCC-CTTCCCSSCSCCCCCEEETTEEEEEETTT----E
T ss_pred eeccEEECCEEEEEcCCCC-------EEEEECCCCcEEEEEcCCC-CcccccccccCCCccEEECCEEEEEeCCC----E
Q ss_pred EEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCC------EEEEEEc------CcEEEEEECCCCcEEE
Q 040444 284 VWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGD------KVLLEVN------GEKLVWYDWKRKKLKT 349 (409)
Q Consensus 284 IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~------~ill~~~------~~~l~~yd~~~~~~~~ 349 (409)
|..++-...+..|... .............-.+.. + .|++... +..|+.+|.+|++...
T Consensus 129 l~AlD~~TG~~~W~~~----~~~~~~~~~~~~sP~v~~----~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W 198 (582)
T 1flg_A 129 VVALNKNTGKVVWKKK----FADHGAGYTMTGAPTIVK----DGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIW 198 (582)
T ss_dssp EEEEESSSCCEEEEEE----CSCGGGTCBCCSCCEEEE----CTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEE
T ss_pred EEEEECCCCCEEeeec----CCCCCcCcccccCCEEeC----CCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEe
No 189
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=20.19 E-value=6.1e+02 Score=24.75 Aligned_cols=154 Identities=11% Similarity=0.005 Sum_probs=74.2
Q ss_pred ecEEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEECCe-EEEEeecCCCCCCccEEEEEECCCc-ceeeec
Q 040444 172 EYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGV-VHWVSPRRPEFGIGNLIVAFDLGLE-EFRLLP 249 (409)
Q Consensus 172 ~~~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~Il~fDl~~e-~~~~i~ 249 (409)
...+.+++..++.-+.+....... ... ......-+|. ++........ ....|..+|+.+. ....+.
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~~~~~-------~~~---~~~~~spdg~~l~~~~~~~~~--~~~~v~~~d~~~g~~~~~~~ 301 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTGEPKE-------KFL---TNLSWSPDENILYVAEVNRAQ--NECKVNAYDAETGRFVRTLF 301 (706)
T ss_dssp EEEEEEEETTTTEEEECCCCSCTT-------CEE---EEEEECTTSSEEEEEEECTTS--CEEEEEEEETTTCCEEEEEE
T ss_pred eeEEEEEECCCCceEeeccCCCCc-------eeE---eeEEEECCCCEEEEEEeCCCC--CeeEEEEEECCCCceeeEEE
Confidence 457888888887755543211000 000 0111112454 4443332211 2235899999887 555442
Q ss_pred CCCCC-CCCCCceEEEEEe--CCeEEEEEecCCCeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCC
Q 040444 250 QPNYG-AREKDFVLDVGAL--EGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGD 326 (409)
Q Consensus 250 lP~~~-~~~~~~~~~L~~~--~G~L~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~ 326 (409)
..... .......+. ..- +|++.++... .....||.++..+ . ....+... .......+++.+ +|+
T Consensus 302 ~~~~~~~~~~~~~~~-~sp~~dg~~l~~~~~-~g~~~l~~~~~~~--~---~~~~l~~~----~~~v~~~~~~sp--dg~ 368 (706)
T 2z3z_A 302 VETDKHYVEPLHPLT-FLPGSNNQFIWQSRR-DGWNHLYLYDTTG--R---LIRQVTKG----EWEVTNFAGFDP--KGT 368 (706)
T ss_dssp EEECSSCCCCCSCCE-ECTTCSSEEEEEECT-TSSCEEEEEETTS--C---EEEECCCS----SSCEEEEEEECT--TSS
T ss_pred EccCCCeECccCCce-eecCCCCEEEEEEcc-CCccEEEEEECCC--C---EEEecCCC----CeEEEeeeEEcC--CCC
Confidence 21101 000000111 122 6775444433 3478999988322 2 22223211 112223356777 777
Q ss_pred EEEEEEcC-----cEEEEEECCCCcEEEE
Q 040444 327 KVLLEVNG-----EKLVWYDWKRKKLKTV 350 (409)
Q Consensus 327 ~ill~~~~-----~~l~~yd~~~~~~~~v 350 (409)
.|++.... ..|+.+|+++++.+.+
T Consensus 369 ~l~~~~~~~~~~~~~l~~~d~~~~~~~~l 397 (706)
T 2z3z_A 369 RLYFESTEASPLERHFYCIDIKGGKTKDL 397 (706)
T ss_dssp EEEEEESSSCTTCBEEEEEETTCCCCEES
T ss_pred EEEEEecCCCCceEEEEEEEcCCCCceec
Confidence 77776543 2689999988876554
Done!