BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040445
(358 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UAS|A Chain A, Crystal Structure Of Rice Alpha-Galactosidase
Length = 362
Score = 319 bits (818), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 176/390 (45%), Positives = 224/390 (57%), Gaps = 84/390 (21%)
Query: 20 LSNGLGLTPPMGWNSWNHFHCQINEKIIRET-------------------DDCWGESSRD 60
NGLG TP MGWNSWNHF+C INE+IIRET DDCW E SRD
Sbjct: 1 FENGLGRTPQMGWNSWNHFYCGINEQIIRETADALVNTGLAKLGYQYVNIDDCWAEYSRD 60
Query: 61 SQISLSCSFHMFDSLTQIAAKPLPNQCQGNLVANKTTFPSGTKALADYVHI--------- 111
SQ GN V N+ TFPSG KALADYVH
Sbjct: 61 SQ--------------------------GNFVPNRQTFPSGIKALADYVHAKGLKLGIYS 94
Query: 112 -LISNSLDNRIESNIAFEQ---------GIDYLKYDNCFNDDTRPTI-RYRAMSDALKKA 160
S + N++ ++ E+ G+DYLKYDNC ND R + RY MS+A+K
Sbjct: 95 DAGSQTCSNKMPGSLDHEEQDVKTFASWGVDYLKYDNC-NDAGRSVMERYTRMSNAMKTY 153
Query: 161 GRPIFFSMCEWGDMRPALWGSNIRNSWRTTDDISDSWARMLTIADMNEVYADHAKPGGWN 220
G+ IFFS+CEWG PA W + NSWRTT DI+D+W M + AD N+ +A +A PGGWN
Sbjct: 154 GKNIFFSLCEWGKENPATWAGRMGNSWRTTGDIADNWGSMTSRADENDQWAAYAGPGGWN 213
Query: 221 DPDMLEVGNGGMKYNEYVVHFSIWAISKAPLLLGCDVGNLTAETMPIIGNEEVIAVN--- 277
DPDMLEVGNGGM EY HFSIWA++KAPLL+GCDV +++ +T I+ N EVIAVN
Sbjct: 214 DPDMLEVGNGGMSEAEYRSHFSIWALAKAPLLIGCDVRSMSQQTKNILSNSEVIAVNQDS 273
Query: 278 --------QAINDQQIWAGPLSGNRIVVLLESRKTFSSMMTAHWDDIGIKSN-----NTL 324
Q+ N ++WAGPLS NR V+L +R+++ + +TAHW +IG+ + L
Sbjct: 274 LGVQGKKVQSDNGLEVWAGPLSNNRKAVVLWNRQSYQATITAHWSNIGLAGSVAVTARDL 333
Query: 325 FEHRTLETKFQGKLTAKVDGHSCKMYELTP 354
+ H + QG+++A V H CKMY LTP
Sbjct: 334 WAHSSFAA--QGQISASVAPHDCKMYVLTP 361
>pdb|3A5V|A Chain A, Crystal Structure Of Alpha-Galactosidase I From
Mortierella Vinacea
Length = 397
Score = 208 bits (529), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 133/396 (33%), Positives = 196/396 (49%), Gaps = 71/396 (17%)
Query: 21 SNGLGLTPPMGWNSWNHFHCQINEKIIRETDDCWGESSRDSQISLSCSFHMFDSLTQIAA 80
+NGL +TP MGWN+WN + C ++E++I + S L ++ + D Q
Sbjct: 2 NNGLAITPQMGWNTWNKYGCNVDEQLILDAAKAIASSGLKD---LGYNYVIIDDCWQKNE 58
Query: 81 KPLPNQCQGNLVANKTTFPSGTKALADYVHIL------------------ISNSLDNRIE 122
+ + L+A+ T FP G K L D +H L I++ I+
Sbjct: 59 R----ESSKTLLADPTKFPRGIKPLVDDIHNLGLKAGIYSSAGTLTCGGHIASLGYEDID 114
Query: 123 SNIAFEQGIDYLKYDNCFNDDTRPTI-----RYRAMSDALKKAGRPIFFSMCEWGDMRPA 177
+ + GIDYLKYDNC+N T RY+AM +AL K GRP+ +S+C WG+ P
Sbjct: 115 AKTWAKWGIDYLKYDNCYNQGQSGTPKLSYDRYKAMGNALNKTGRPMLYSLCNWGEDGPW 174
Query: 178 LWGSNIRNSWRTTDDISDSWAR--------------------MLTIADMNEVYADHAKPG 217
+ S I NSWR + D+ D++ R ++ I + + A+ G
Sbjct: 175 NFASTISNSWRISGDVYDNFNRPDPACPCTTYDCVLAGFRCSVMNIINKAVAVSQKARSG 234
Query: 218 GWNDPDMLEVGNGGMKYNEYVVHFSIWAISKAPLLLGCDVGNLTAETMPIIGNEEVIAVN 277
GWND DMLEVGNGGM EY VH++IWA K+PL+LG DV N+T T II N+EVIAVN
Sbjct: 235 GWNDLDMLEVGNGGMNQEEYRVHYTIWAALKSPLILGNDVTNITNTTKEIIMNKEVIAVN 294
Query: 278 Q-----------AINDQQIWAGPLSGNRIVVLLESRKTFSSMMTAHWDDIGIKSNNTLFE 326
Q DQQ+++G L+ N VV+L + ++ MTA WDDI + + +
Sbjct: 295 QDSSFSPANRIWVKGDQQLFSGNLANNTQVVILLNAGDSAAKMTATWDDIWVYNLPNVDS 354
Query: 327 HRTLETK----------FQGKLTAKVDGHSCKMYEL 352
R++E + F +T V H ++ +
Sbjct: 355 SRSIEVRDLWKQKSLGNFSNHITLDVPAHGVRLLKF 390
>pdb|3LRK|A Chain A, Structure Of Alfa-Galactosidase (Mel1) From Saccharomyces
Cerevisiae
pdb|3LRL|A Chain A, Structure Of Alfa-Galactosidase (Mel1) From Saccharomyces
Cerevisiae With Melibiose
Length = 479
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 120/366 (32%), Positives = 174/366 (47%), Gaps = 74/366 (20%)
Query: 22 NGLGLTPPMGWNSWNHFHCQINEKIIRETDDCWGESSRDSQISLSCSFHMFDSLTQIAAK 81
NGLGLTP MGW++WN F C ++E+++ +T D R S + L + + L +
Sbjct: 24 NGLGLTPQMGWDNWNTFACDVSEQLLLDTAD------RISDLGLKDMGYKYIILDDCWSS 77
Query: 82 PLPNQCQGNLVANKTTFPSGTKALADYVH------ILISNSLD----------NRIESNI 125
G LVA++ FP+G +AD++H + S++ + R E +
Sbjct: 78 G--RDSDGFLVADEQKFPNGMGHVADHLHNNSFLFGMYSSAGEYTCAGYPGSLGREEEDA 135
Query: 126 AF--EQGIDYLKYDNCFNDDT--RPTI---RYRAMSDALKKAGRPIFFSMCEWGDMRPAL 178
F +DYLKYDNC+N P I RY+AMSDAL K GRP+F+S+C WG
Sbjct: 136 QFFANNRVDYLKYDNCYNKGQFGTPEISYHRYKAMSDALNKTGRPVFYSLCNWGQDLTFY 195
Query: 179 WGSNIRNSWRTTDDISDSWAR----------------------MLTIADMNEVYADHAKP 216
WGS I NSWR + D++ + R ++ I + +A
Sbjct: 196 WGSGIANSWRMSGDVTAEFTRPDSRCPCDGDEYDCKYAGFHCSIMNILNKAAPMGQNAGV 255
Query: 217 GGWNDPDMLEVGNGGMKYNEYVVHFSIWAISKAPLLLGCDVGNLTAETMPIIGNEEVIAV 276
GGWND D LEVG G + +E HFS+WA+ K+PL++G +V NL A + I VIA+
Sbjct: 256 GGWNDLDNLEVGVGNLTDDEEKAHFSMWAMVKSPLIIGANVNNLKASSYSIYSQASVIAI 315
Query: 277 NQAIN---------------------DQQIWAGPLSGNRIVVLLESRKTFSSMMTAHWDD 315
NQ N + Q+W+GPL VV L + + S M ++
Sbjct: 316 NQDSNGIPATRVWRYYVSDTDEYGQGEIQMWSGPLDNGDQVVALLNGGSVSRPMNTTLEE 375
Query: 316 IGIKSN 321
I SN
Sbjct: 376 IFFDSN 381
>pdb|3LRM|A Chain A, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
pdb|3LRM|B Chain B, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
pdb|3LRM|C Chain C, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
pdb|3LRM|D Chain D, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
Length = 479
Score = 171 bits (432), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 119/366 (32%), Positives = 173/366 (47%), Gaps = 74/366 (20%)
Query: 22 NGLGLTPPMGWNSWNHFHCQINEKIIRETDDCWGESSRDSQISLSCSFHMFDSLTQIAAK 81
NGLGLTP MGW++WN F C ++E+++ +T D R S + L + + L +
Sbjct: 24 NGLGLTPQMGWDNWNTFACDVSEQLLLDTAD------RISDLGLKDMGYKYIILDDCWSS 77
Query: 82 PLPNQCQGNLVANKTTFPSGTKALADYVH------ILISNSLD----------NRIESNI 125
G LVA++ FP+G +AD++H + S++ + R E +
Sbjct: 78 G--RDSDGFLVADEQKFPNGMGHVADHLHNNSFLFGMYSSAGEYTCAGYPGSLGREEEDA 135
Query: 126 AF--EQGIDYLKYDNCFNDDT--RPTI---RYRAMSDALKKAGRPIFFSMCEWGDMRPAL 178
F +DYLKY NC+N P I RY+AMSDAL K GRP+F+S+C WG
Sbjct: 136 QFFANNRVDYLKYANCYNKGQFGTPEISYHRYKAMSDALNKTGRPVFYSLCNWGQDLTFY 195
Query: 179 WGSNIRNSWRTTDDISDSWAR----------------------MLTIADMNEVYADHAKP 216
WGS I NSWR + D++ + R ++ I + +A
Sbjct: 196 WGSGIANSWRMSGDVTAEFTRPDSRCPCDGDEYDCKYAGFHCSIMNILNKAAPMGQNAGV 255
Query: 217 GGWNDPDMLEVGNGGMKYNEYVVHFSIWAISKAPLLLGCDVGNLTAETMPIIGNEEVIAV 276
GGWND D LEVG G + +E HFS+WA+ K+PL++G +V NL A + I VIA+
Sbjct: 256 GGWNDLDNLEVGVGNLTDDEEKAHFSMWAMVKSPLIIGANVNNLKASSYSIYSQASVIAI 315
Query: 277 NQAIN---------------------DQQIWAGPLSGNRIVVLLESRKTFSSMMTAHWDD 315
NQ N + Q+W+GPL VV L + + S M ++
Sbjct: 316 NQDSNGIPATRVWRYYVSDTDEYGQGEIQMWSGPLDNGDQVVALLNGGSVSRPMNTTLEE 375
Query: 316 IGIKSN 321
I SN
Sbjct: 376 IFFDSN 381
>pdb|1KTB|A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase
pdb|1KTC|A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase
Length = 405
Score = 140 bits (354), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 132/318 (41%), Gaps = 86/318 (27%)
Query: 20 LSNGLGLTPPMGWNSWNHFHCQIN----------EKIIRE-------------------T 50
L NGL TPPMGW +W F C +N E + E
Sbjct: 1 LENGLARTPPMGWLAWERFRCNVNCREDPRQCISEMLFMEMADRIAEDGWRELGYKYINI 60
Query: 51 DDCWGESSRDSQISLSCSFHMFDSLTQIAAKPLPNQCQGNLVANKTTFPSGTKALADYVH 110
DDCW RD++ G LV + FP G KALADYVH
Sbjct: 61 DDCWAAKQRDAE--------------------------GRLVPDPERFPRGIKALADYVH 94
Query: 111 -----ILISNSLD------------NRIESNIA--FEQGIDYLKYDNCFNDDTRPTIRYR 151
+ I L +R+E + E G+D LK D C++ Y
Sbjct: 95 ARGLKLGIYGDLGRLTCGGYPGTTLDRVEQDAQTFAEWGVDMLKLDGCYSSGKEQAQGYP 154
Query: 152 AMSDALKKAGRPIFFSMCEW----GDMRPAL---WGSNIRNSWRTTDDISDSWARMLTIA 204
M+ AL GRPI +S C W G + P + I N WR DDI DSW +L+I
Sbjct: 155 QMARALNATGRPIVYS-CSWPAYQGGLPPKVNYTLLGEICNLWRNYDDIQDSWDSVLSIV 213
Query: 205 DM----NEVYADHAKPGGWNDPDMLEVGNGGMKYNEYVVHFSIWAISKAPLLLGCDVGNL 260
D +V A PG WNDPDML +GN G+ Y + ++W I APLL+ D+ +
Sbjct: 214 DWFFTNQDVLQPFAGPGHWNDPDMLIIGNFGLSYEQSRSQMALWTIMAAPLLMSTDLRTI 273
Query: 261 TAETMPIIGNEEVIAVNQ 278
+ I+ N +I +NQ
Sbjct: 274 SPSAKKILQNRLMIQINQ 291
>pdb|1R46|A Chain A, Structure Of Human Alpha-galactosidase
pdb|1R46|B Chain B, Structure Of Human Alpha-galactosidase
pdb|1R47|A Chain A, Structure Of Human Alpha-Galactosidase
pdb|1R47|B Chain B, Structure Of Human Alpha-Galactosidase
pdb|3GXN|A Chain A, Crystal Structure Of Apo Alpha-Galactosidase A At Ph 4.5
pdb|3GXN|B Chain B, Crystal Structure Of Apo Alpha-Galactosidase A At Ph 4.5
pdb|3GXP|A Chain A, Crystal Structure Of Acid-alpha-galactosidase A Complexed
With Galactose At Ph 4.5
pdb|3GXP|B Chain B, Crystal Structure Of Acid-alpha-galactosidase A Complexed
With Galactose At Ph 4.5
pdb|3GXT|A Chain A, Crystal Structure Of Alpha-Galactosidase A At Ph 4.5
Complexed With 1- Deoxygalactonijirimycin
pdb|3GXT|B Chain B, Crystal Structure Of Alpha-Galactosidase A At Ph 4.5
Complexed With 1- Deoxygalactonijirimycin
pdb|3HG2|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 1. Empty
Active Site
pdb|3HG2|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 1. Empty
Active Site
pdb|3HG4|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 3. Covalent
Intermediate
pdb|3HG4|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 3. Covalent
Intermediate
pdb|3HG5|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 4. Product
Bound
pdb|3HG5|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 4. Product
Bound
pdb|3S5Y|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Y|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Z|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Z|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
Length = 398
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 107/353 (30%), Positives = 150/353 (42%), Gaps = 96/353 (27%)
Query: 20 LSNGLGLTPPMGWNSWNHFHCQ----------INEKIIRE-------------------T 50
L NGL TP MGW W F C I+EK+ E
Sbjct: 1 LDNGLARTPTMGWLHWERFMCNLDCQEEPDSCISEKLFMEMAELMVSEGWKDAGYEYLCI 60
Query: 51 DDCWGESSRDSQISLSCSFHMFDSLTQIAAKPLPNQCQGNLVANKTTFPSGTKALADYVH 110
DDCW RDS+ G L A+ FP G + LA+YVH
Sbjct: 61 DDCWMAPQRDSE--------------------------GRLQADPQRFPHGIRQLANYVH 94
Query: 111 -----ILISNSLDNR-------------IESNIAFEQGIDYLKYDNCFNDDTRPTIR-YR 151
+ I + N+ I++ + G+D LK+D C+ D Y+
Sbjct: 95 SKGLKLGIYADVGNKTCAGFPGSFGYYDIDAQTFADWGVDLLKFDGCYCDSLENLADGYK 154
Query: 152 AMSDALKKAGRPIFFSMCEWGDMRPALWGSN---IR---NSWRTTDDISDSWARMLTIAD 205
MS AL + GR I +S CEW N IR N WR DI DSW + +I D
Sbjct: 155 HMSLALNRTGRSIVYS-CEWPLYMWPFQKPNYTEIRQYCNHWRNFADIDDSWKSIKSILD 213
Query: 206 M----NEVYADHAKPGGWNDPDMLEVGNGGMKYNEYVVHFSIWAISKAPLLLGCDVGNLT 261
E D A PGGWNDPDML +GN G+ +N+ V ++WAI APL + D+ +++
Sbjct: 214 WTSFNQERIVDVAGPGGWNDPDMLVIGNFGLSWNQQVTQMALWAIMAAPLFMSNDLRHIS 273
Query: 262 AETMPIIGNEEVIAVNQAINDQQ-----------IWAGPLSGNRIVVLLESRK 303
+ ++ +++VIA+NQ +Q +W PLSG V + +R+
Sbjct: 274 PQAKALLQDKDVIAINQDPLGKQGYQLRQGDNFEVWERPLSGLAWAVAMINRQ 326
>pdb|3LX9|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LX9|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXA|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXA|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXB|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXB|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXC|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXC|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
Length = 404
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 108/357 (30%), Positives = 153/357 (42%), Gaps = 104/357 (29%)
Query: 20 LSNGLGLTPPMGWNSWNHFHCQ----------INEKIIRE-------------------T 50
L NGL TP MGW W F C I+EK+ E
Sbjct: 1 LDNGLARTPTMGWLHWERFMCNLDCQEEPDSCISEKLFMEMAELMVSEGWKDAGYEYLCI 60
Query: 51 DDCWGESSRDSQISLSCSFHMFDSLTQIAAKPLPNQCQGNLVANKTTFPSGTKALADYVH 110
DDCW RDS+ G L A+ FP G + LA+YVH
Sbjct: 61 DDCWMAPQRDSE--------------------------GRLQADPQRFPHGIRQLANYVH 94
Query: 111 -----ILISNSLDNR-------------IESNIAFEQGIDYLKYDNCFNDDTRPTIR-YR 151
+ I + N+ I++ + G+D LK+D C+ D Y+
Sbjct: 95 SKGLKLGIYADVGNKTCAGFPGSFGYYDIDAQTFADWGVDLLKFDGCYCDSLENLADGYK 154
Query: 152 AMSDALKKAGRPIFFSMCEWGDMRPA-LWG------SNIR---NSWRTTDDISDSWARML 201
MS AL + GR I +S C W PA +W + IR N WR DI DSW +
Sbjct: 155 HMSLALNRTGRSIVYS-CSW----PAYMWPFQKPNYTEIRQYCNHWRNFADIDDSWKSIK 209
Query: 202 TIADM----NEVYADHAKPGGWNDPDMLEVGNGGMKYNEYVVHFSIWAISKAPLLLGCDV 257
+I D E D A PGGWNDPDML +GN G+ +N+ V ++WAI APL + D+
Sbjct: 210 SILDWTSFNQERIVDVAGPGGWNDPDMLVIGNFGLSWNQQVTQMALWAIMAAPLFMSNDL 269
Query: 258 GNLTAETMPIIGNEEVIAVNQAINDQQ-----------IWAGPLSGNRIVVLLESRK 303
+++ + ++ +++VIA+NQ +Q +W PLSG V + +R+
Sbjct: 270 RHISPQAKALLQDKDVIAINQDPLGKQGYQLRQGDNFEVWERPLSGLAWAVAMINRQ 326
>pdb|3H53|A Chain A, Crystal Structure Of Human Alpha-N-Acetylgalactosaminidase
pdb|3H53|B Chain B, Crystal Structure Of Human Alpha-N-Acetylgalactosaminidase
pdb|3H54|A Chain A, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase,Complex With Galnac
pdb|3H54|B Chain B, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase,Complex With Galnac
pdb|3H55|A Chain A, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase, Complex With Galactose
pdb|3H55|B Chain B, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase, Complex With Galactose
pdb|3IGU|A Chain A, Crystal Structure Of Human
Alpha-n-acetylgalactosaminidase, Covalent Intermediate
pdb|3IGU|B Chain B, Crystal Structure Of Human
Alpha-n-acetylgalactosaminidase, Covalent Intermediate
pdb|4DO4|A Chain A, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO4|B Chain B, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO5|A Chain A, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO5|B Chain B, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO6|A Chain A, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO6|B Chain B, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
Length = 400
Score = 134 bits (338), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 96/299 (32%), Positives = 135/299 (45%), Gaps = 49/299 (16%)
Query: 20 LSNGLGLTPPMGWNSWNHFHCQIN----------EKIIRETDDCWGESSRDSQISLSCSF 69
L NGL TPPMGW +W F C IN E++ E D ++D + ++
Sbjct: 1 LDNGLLQTPPMGWLAWERFRCNINCDEDPKNCISEQLFMEMAD---RMAQDGWRDMGYTY 57
Query: 70 HMFDSLTQIAAKPLPNQCQGNLVANKTTFPSGTKALADYVHIL----------------- 112
D I + G L+ + FP G LADYVH L
Sbjct: 58 LNIDD-CWIGGR----DASGRLMPDPKRFPHGIPFLADYVHSLGLKLGIYADMGNFTCMG 112
Query: 113 -ISNSLDNRIESNIAF-EQGIDYLKYDNCFNDDTRPTIRYRAMSDALKKAGRPIFFSMCE 170
+LD ++ F E +D LK D CF+ Y M+ AL GRPI FS C
Sbjct: 113 YPGTTLDKVVQDAQTFAEWKVDMLKLDGCFSTPEERAQGYPKMAAALNATGRPIAFS-CS 171
Query: 171 W----GDMRPALWGS---NIRNSWRTTDDISDSWARMLTI----ADMNEVYADHAKPGGW 219
W G + P + S +I N WR DDI DSW +L+I + ++ A PG W
Sbjct: 172 WPAYEGGLPPRVQYSLLADICNLWRNYDDIQDSWWSVLSILNWFVEHQDILQPVAGPGHW 231
Query: 220 NDPDMLEVGNGGMKYNEYVVHFSIWAISKAPLLLGCDVGNLTAETMPIIGNEEVIAVNQ 278
NDPDML +GN G+ + ++W + APLL+ D+ ++A+ M I+ N +I +NQ
Sbjct: 232 NDPDMLLIGNFGLSLEQSRAQMALWTVLAAPLLMSTDLRTISAQNMDILQNPLMIKINQ 290
>pdb|3HG3|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 2. Substrate
Bound
pdb|3HG3|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 2. Substrate
Bound
pdb|3TV8|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3TV8|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
Length = 404
Score = 134 bits (337), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 106/353 (30%), Positives = 149/353 (42%), Gaps = 96/353 (27%)
Query: 20 LSNGLGLTPPMGWNSWNHFHCQ----------INEKIIRE-------------------T 50
L NGL TP MGW W F C I+EK+ E
Sbjct: 1 LDNGLARTPTMGWLHWERFMCNLDCQEEPDSCISEKLFMEMAELMVSEGWKDAGYEYLCI 60
Query: 51 DDCWGESSRDSQISLSCSFHMFDSLTQIAAKPLPNQCQGNLVANKTTFPSGTKALADYVH 110
DDCW RDS+ G L A+ FP G + LA+YVH
Sbjct: 61 DDCWMAPQRDSE--------------------------GRLQADPQRFPHGIRQLANYVH 94
Query: 111 -----ILISNSLDNR-------------IESNIAFEQGIDYLKYDNCFNDDTRPTIR-YR 151
+ I + N+ I++ + G+D LK+ C+ D Y+
Sbjct: 95 SKGLKLGIYADVGNKTCAGFPGSFGYYDIDAQTFADWGVDLLKFAGCYCDSLENLADGYK 154
Query: 152 AMSDALKKAGRPIFFSMCEWGDMRPALWGSN---IR---NSWRTTDDISDSWARMLTIAD 205
MS AL + GR I +S CEW N IR N WR DI DSW + +I D
Sbjct: 155 HMSLALNRTGRSIVYS-CEWPLYMWPFQKPNYTEIRQYCNHWRNFADIDDSWKSIKSILD 213
Query: 206 M----NEVYADHAKPGGWNDPDMLEVGNGGMKYNEYVVHFSIWAISKAPLLLGCDVGNLT 261
E D A PGGWNDPDML +GN G+ +N+ V ++WAI APL + D+ +++
Sbjct: 214 WTSFNQERIVDVAGPGGWNDPDMLVIGNFGLSWNQQVTQMALWAIMAAPLFMSNDLRHIS 273
Query: 262 AETMPIIGNEEVIAVNQAINDQQ-----------IWAGPLSGNRIVVLLESRK 303
+ ++ +++VIA+NQ +Q +W PLSG V + +R+
Sbjct: 274 PQAKALLQDKDVIAINQDPLGKQGYQLRQGDNFEVWERPLSGLAWAVAMINRQ 326
>pdb|1SZN|A Chain A, The Structure Of Alpha-Galactosidase
pdb|1T0O|A Chain A, The Structure Of Alpha-Galactosidase From Trichoderma
Reesei Complexed With Beta-D-Galactose
Length = 417
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 104/390 (26%), Positives = 154/390 (39%), Gaps = 125/390 (32%)
Query: 25 GLTPPMGWNSWNHFHCQINEKIIRET-------------------DDCWGESSRDSQISL 65
G P +GWNSWN +HC I+E DDCW S +D ++
Sbjct: 9 GKVPSLGWNSWNAYHCDIDESKFLSAAELIVSSGLLDAGYNYVNIDDCW--SMKDGRV-- 64
Query: 66 SCSFHMFDSLTQIAAKPLPNQCQGNLVANKTTFPSGTKALADYVHIL---------ISNS 116
G++ N T FP G LA VH L +
Sbjct: 65 ----------------------DGHIAPNATRFPDGIDGLAKKVHALGLKLGIYSTAGTA 102
Query: 117 LDNRIESNIAFEQ---------GIDYLKYDNC-----FNDD------------------- 143
+++ +E G+DYLKYDNC + D+
Sbjct: 103 TCAGYPASLGYEDVDAADFADWGVDYLKYDNCNVPSDWQDEYVACNPDFVKTGPNGTCTT 162
Query: 144 -TRPTI--------------RYRAMSDALKKAGRPIFFSMCEWGDMRPALWGSNIRNSWR 188
PT+ R+ AM +AL K I SMC WG WG++ SWR
Sbjct: 163 ALDPTLAPPGYDWSTSKSAERFGAMRNALAKQSHEIVLSMCIWGQADVFSWGNSTGISWR 222
Query: 189 TTDDISDSWARMLTIADMNEVYADHAKPGGWNDPDMLEVGNGGMKYNEYVVHFSIWAISK 248
+DDIS +W + I ++N + G ND DMLEVGNG + E HF++WA K
Sbjct: 223 MSDDISPNWGSVTRILNLNSFKLNSVDFWGHNDADMLEVGNGNLTAAETRTHFALWAAMK 282
Query: 249 APLLLGCDVGNLTAETMPIIGNEEVIAVNQ-------------AINDQ---------QIW 286
+PLL+G D+ L+ + ++ N+ ++A NQ IN + W
Sbjct: 283 SPLLIGTDLAQLSQNNINLLKNKHLLAFNQDSVYGQPATPYKWGINPDWTFNVTYPAEFW 342
Query: 287 AGPLSGNRIVVLLESRKTFSSMMTAHWDDI 316
AGP S +V+++ + ++ A W++I
Sbjct: 343 AGPSSKGHLVLMVNTLD-ITATKEAKWNEI 371
>pdb|3A21|A Chain A, Crystal Structure Of Streptomyces Avermitilis Beta-L-
Arabinopyranosidase
pdb|3A21|B Chain B, Crystal Structure Of Streptomyces Avermitilis Beta-L-
Arabinopyranosidase
pdb|3A22|A Chain A, Crystal Structure Of Beta-L-Arabinopyranosidase Complexed
With L- Arabinose
pdb|3A22|B Chain B, Crystal Structure Of Beta-L-Arabinopyranosidase Complexed
With L- Arabinose
pdb|3A23|A Chain A, Crystal Structure Of Beta-l-arabinopyranosidase Complexed
With D- Galactose
pdb|3A23|B Chain B, Crystal Structure Of Beta-l-arabinopyranosidase Complexed
With D- Galactose
Length = 614
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 107/389 (27%), Positives = 167/389 (42%), Gaps = 73/389 (18%)
Query: 29 PMGWNSWNHFHCQINEKIIRETDDCWGESSRDSQISLSCSFHMFDSLTQIAAKPLPNQCQ 88
PMGW SWN F +I+ +I++ D + L + + + ++ + + +
Sbjct: 13 PMGWASWNSFAAKIDYSVIKKQVDAF------VAAGLPAAGYTYINIDEGWWQGTRDSA- 65
Query: 89 GNLVANKTTFPSGTKALADYVHILISNSLDNRIESNIA---------------------- 126
GN+ + +P G A+ Y+H S L I ++
Sbjct: 66 GNITVDTAEWPGGMSAITAYIH---SKGLKAGIYTDAGKDGCGYYYPTGRPAAPGSGSEG 122
Query: 127 -FEQ--------GIDYLKYDNCFND--DTRPTIRYRAMSDALKKA----GRPIFFSMCEW 171
++Q G D++K D C D Y+++SDA+ +A GRP+ S+C W
Sbjct: 123 HYDQDMLQFSTWGFDFVKVDWCGGDAEGLDAATTYKSISDAVGRAAATTGRPLTLSICNW 182
Query: 172 GDMRPALWGSNIRNSWRTTDDI-----SDSWARMLTIADMNEVYADHAKPGGWNDPDMLE 226
G P W + WRT+ DI S +L+ D ++ G +NDPDML
Sbjct: 183 GYQNPWNWAAGQAPLWRTSTDIIYYGNQPSMTSLLSNFDQT-LHPTAQHTGYYNDPDMLM 241
Query: 227 VGNGGMKYNEYVVHFSIWAISKAPLLLGCDVGNLTAETMPIIGNEEVIAVNQ-------- 278
VG G + H ++WAIS APLL G D+ +T+ET I+ N EVIAV+Q
Sbjct: 242 VGMDGFTAAQNRTHMNLWAISGAPLLAGNDLTTMTSETAGILKNPEVIAVDQDSRGLQGV 301
Query: 279 ----AINDQQIWAGPLS--GNRIVVLLESRKTFSSMMTAHWDDIGIKSNNT----LFEHR 328
Q + LS GNR VVLL R + + +T W D+G+ + + L+ +
Sbjct: 302 KVAEDTTGLQAYGKVLSGTGNRAVVLLN-RTSAAHDITVRWSDLGLTNASATVRDLWARQ 360
Query: 329 TLETKFQGKLTAKVDGHSCKMYELTPVTK 357
+ T G TA V M +T T+
Sbjct: 361 NVGTSATG-YTASVPAGGSVMLTVTGGTE 388
>pdb|3CC1|A Chain A, Crystal Structure Of A Putative
Alpha-N-Acetylgalactosaminidase (Bh1870) From Bacillus
Halodurans C-125 At 2.00 A Resolution
pdb|3CC1|B Chain B, Crystal Structure Of A Putative
Alpha-N-Acetylgalactosaminidase (Bh1870) From Bacillus
Halodurans C-125 At 2.00 A Resolution
Length = 433
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 89/224 (39%), Gaps = 30/224 (13%)
Query: 130 GIDYLKYDNCFNDDTRPTI--RYRAMSDALKKAGRPIFFSMCEWGDMRPALWGSNIR--- 184
G+D++K D+ T + + A++ GRP S+ P + + +
Sbjct: 177 GVDFVKVDDIAASRLYDTHLEEIKXIQRAIQACGRPXVLSLSP--GPAPIKYAHHFKTNA 234
Query: 185 NSWRTTDDISDSWARMLTIADMNEVYADHAKPGGWNDPDMLEVGNGGMK----------- 233
N WR TDD D W+ + + EV+ H G W D L +G+ G++
Sbjct: 235 NXWRITDDFWDDWSLLYQXFERCEVWEKHIGTGHWPDCGXLPLGHIGIRSVDGPGGDRWT 294
Query: 234 ---YNEYVVHFSIWAISKAPLLLGCDVGNLTAETMPIIGNEEVIAVNQAI---------N 281
+E + ++WAI +PL G ++ + T+ ++ NE ++++NQ
Sbjct: 295 RFTKDEQLTXXNLWAICHSPLXFGGELRDNDEWTLSLLTNEGILSINQKSVLNRFVYREE 354
Query: 282 DQQIWAGPLSGNRIVVLLESRKTFSSMMTAHWDDIGIKSNNTLF 325
D+ WA V L + + D +GI LF
Sbjct: 355 DKVAWAANGRNGEAYVALFNLHDQQKTLQFRLDXVGIXETVQLF 398
>pdb|1ZLD|A Chain A, Crystal Structure Of A Rgd-Containing Host-Selective
Toxin: Pyrenophora Tritici-Repentis Ptr Toxa
pdb|1ZLE|A Chain A, Crystal Structure Of A Rgd-Containing Host-Selective
Toxin: Pyrenophora Tritici-Repentis Ptr Toxa
pdb|1ZLE|B Chain B, Crystal Structure Of A Rgd-Containing Host-Selective
Toxin: Pyrenophora Tritici-Repentis Ptr Toxa
pdb|1ZLE|C Chain C, Crystal Structure Of A Rgd-Containing Host-Selective
Toxin: Pyrenophora Tritici-Repentis Ptr Toxa
Length = 118
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 182 NIRNSWRTTDDISDSWARMLTIADMNEVYADHA 214
NIRN+ RT I W +T D+ E++ D+A
Sbjct: 59 NIRNTGRTNRLIITQWDNTVTRGDVYELFGDYA 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,210,776
Number of Sequences: 62578
Number of extensions: 464184
Number of successful extensions: 1118
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1052
Number of HSP's gapped (non-prelim): 21
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)