Query 040446
Match_columns 270
No_of_seqs 184 out of 1151
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 13:35:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040446.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040446hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8s_S 50S ribosomal protein L 100.0 2.5E-40 8.4E-45 267.7 9.4 109 109-217 2-110 (110)
2 2zjr_P 50S ribosomal protein L 100.0 1.1E-40 3.8E-45 278.6 6.1 127 91-218 6-132 (134)
3 2ftc_M Mitochondrial ribosomal 100.0 1.7E-39 5.7E-44 262.9 12.3 107 113-219 2-109 (110)
4 1i4j_A 50S ribosomal protein L 100.0 1.1E-38 3.9E-43 258.0 10.9 107 109-218 2-108 (110)
5 1vq8_R 50S ribosomal protein L 100.0 2E-36 6.8E-41 258.3 9.3 112 108-220 13-154 (155)
6 3bbo_U Ribosomal protein L22; 100.0 1.3E-37 4.4E-42 274.5 -0.5 114 108-221 30-143 (199)
7 3j21_S 50S ribosomal protein L 100.0 3E-35 1E-39 251.1 9.4 110 108-218 16-154 (155)
8 2zkr_r 60S ribosomal protein L 100.0 1.8E-34 6E-39 252.3 12.1 111 108-219 13-155 (184)
9 3iz5_V 60S ribosomal protein L 100.0 4.4E-34 1.5E-38 247.3 9.9 109 108-217 13-154 (171)
10 3u5e_P L20A, YL17, 60S ribosom 100.0 6.5E-34 2.2E-38 248.7 9.5 111 108-219 13-155 (184)
11 4a17_Q RPL17, 60S ribosomal pr 100.0 2.3E-33 7.7E-38 245.0 11.4 111 108-219 15-157 (183)
12 3lvl_A NIFU-like protein; prot 54.4 18 0.00063 28.9 5.0 60 108-167 55-124 (129)
13 4eb5_C NIFU protein (NIFU-1); 39.7 26 0.00088 29.3 3.8 60 108-167 49-119 (153)
14 3fau_A NEDD4-binding protein 2 37.2 54 0.0018 23.7 4.9 41 131-187 5-45 (82)
15 3ka5_A Ribosome-associated pro 35.5 14 0.00049 26.9 1.4 16 131-146 10-25 (65)
16 3lyv_A Ribosome-associated fac 33.5 16 0.00054 26.7 1.4 15 132-146 12-26 (66)
17 3k2t_A LMO2511 protein; lister 33.3 18 0.00062 25.6 1.6 16 131-146 10-25 (57)
18 1su0_B NIFU like protein ISCU; 32.9 56 0.0019 27.1 4.8 58 107-164 55-141 (159)
19 2d9i_A NEDD4-binding protein 2 30.3 1E+02 0.0035 22.8 5.6 41 131-187 13-53 (96)
20 1xjs_A NIFU-like protein; SR17 28.9 50 0.0017 26.9 3.8 38 107-144 56-93 (147)
21 2z7e_A ISCU protein, NIFU-like 27.2 61 0.0021 26.9 4.1 63 108-170 54-127 (157)
22 2qq4_A Iron-sulfur cluster bio 23.6 1.3E+02 0.0044 24.1 5.3 37 108-144 55-91 (138)
23 2vkc_A NEDD4-binding protein 2 22.0 1.3E+02 0.0044 23.9 5.0 41 131-187 58-98 (135)
No 1
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...
Probab=100.00 E-value=2.5e-40 Score=267.73 Aligned_cols=109 Identities=39% Similarity=0.474 Sum_probs=107.1
Q ss_pred eEEEEeCCCccCHHHHHHHHHHHcCCCHHHHHHHHhhchhhhHHHHHHHHHHHHHHhhHhCCCCCCCeEEEEEEecCCcc
Q 040446 109 KVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARANATHNHGLDPDRLLVAEAFVGKGFF 188 (270)
Q Consensus 109 evkA~~r~iriSpKKlr~VarlIRGm~V~eAi~qL~fs~KKaAk~V~KlL~sA~aNA~~~~GlD~d~L~I~ea~VnkG~~ 188 (270)
|++|.++++++||+|+++||++||||+|+||+.||+|+|+|+|++|+++|+||.+||++++|+|+|+|||++||||+||+
T Consensus 2 e~kA~~~~ir~S~kK~r~va~~IrG~~v~~Al~~L~f~pkkaa~~v~k~L~sA~aNAe~~~gld~d~L~I~~~~v~~g~~ 81 (110)
T 3r8s_S 2 ETIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPS 81 (110)
T ss_dssp CEEEEEEEESSCHHHHHHHHHHHTTCBHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHSSCCTTSCEEEEEEEEEEEE
T ss_pred eEEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHhhCCHHHHHHHHHHHHHHHHhHHHhcCCChhheEEEEEEeCCCCc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCccccccCceeEEEEEEec
Q 040446 189 KKRVSYHSKGRSGIKVRPECRLTVVVREL 217 (270)
Q Consensus 189 ~KR~~pRARGRa~~irk~~~HItVVLkE~ 217 (270)
+||++||||||+++|++++|||+|+|+|.
T Consensus 82 ~KR~~pRA~GR~~~i~k~~~HI~vvl~ek 110 (110)
T 3r8s_S 82 MKRIMPRAKGRADRILKRTSHITVVVSDR 110 (110)
T ss_dssp EEEEEECGGGCEEEEEEEEEEEEEEEECC
T ss_pred cCCCCcCCCCCCCCcccCCccEEEEEecC
Confidence 99999999999999999999999999984
No 2
>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ...
Probab=100.00 E-value=1.1e-40 Score=278.61 Aligned_cols=127 Identities=33% Similarity=0.422 Sum_probs=117.6
Q ss_pred cccCCCCccccccccCCceEEEEeCCCccCHHHHHHHHHHHcCCCHHHHHHHHhhchhhhHHHHHHHHHHHHHHhhHhCC
Q 040446 91 LAIESGKADDQKVVSKPAKVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARANATHNHG 170 (270)
Q Consensus 91 ~~~~~~k~~~~~~v~k~~evkA~~r~iriSpKKlr~VarlIRGm~V~eAi~qL~fs~KKaAk~V~KlL~sA~aNA~~~~G 170 (270)
+.|.+-|.+||.++. ..+++|.++++++||+|+++||++||||+|+||+.||+|+|+|+|++|+++|+||.+||++++|
T Consensus 6 ~~~~~~~~~~~~~~~-~~~akA~~~~irvSpkK~r~Va~~IRG~~v~eAl~~L~f~pkKaA~~v~klL~sA~aNAe~n~g 84 (134)
T 2zjr_P 6 QTFRNKKQRKQQVKL-RKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLRFIPRSASEPVAKVLNSAKANALHNDE 84 (134)
T ss_dssp --CCCHHHHHHHCCC-CCTTEEEEEEESSCHHHHHHHHHHSTTSBHHHHHHHHHHCCCTTHHHHHHHHTTTHHHHTTTTC
T ss_pred HhhhhhhHHHHHhhh-ceEEEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHHHCcHhHHHHHHHHHHHHHHhHHHhcC
Confidence 446666666666444 5679999999999999999999999999999999999999999999999999999999998899
Q ss_pred CCCCCeEEEEEEecCCcccccccccCCCCccccccCceeEEEEEEecC
Q 040446 171 LDPDRLLVAEAFVGKGFFKKRVSYHSKGRSGIKVRPECRLTVVVRELT 218 (270)
Q Consensus 171 lD~d~L~I~ea~VnkG~~~KR~~pRARGRa~~irk~~~HItVVLkE~~ 218 (270)
||+|+|||++||||+||++||++||||||+++|++++|||+|+|+|.+
T Consensus 85 ld~d~L~I~~i~V~~Gp~lKR~~pRA~GRa~~i~k~tsHItvvl~E~~ 132 (134)
T 2zjr_P 85 MLEDRLFVKEAYVDAGPTLKRLIPRARGSANIIKKRTSHITIIVAEKG 132 (134)
T ss_dssp CCGGGEEEEEEEEEECCCEEEEEECSTTCEEEEEECCEEEEEEEEECC
T ss_pred CChhheEEEEEEECCCccccCCCCCCCCCCcccccCCceEEEEEEecC
Confidence 999999999999999999999999999999999999999999999974
No 3
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M
Probab=100.00 E-value=1.7e-39 Score=262.89 Aligned_cols=107 Identities=34% Similarity=0.508 Sum_probs=104.0
Q ss_pred EeCCCccCHHHHHHHHHHHcCCCHHHHHHHHhhchhhhHHHHHHHHHHHHHHhhHhCCCC-CCCeEEEEEEecCCccccc
Q 040446 113 VLKGIKQSPKKINLVAALVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARANATHNHGLD-PDRLLVAEAFVGKGFFKKR 191 (270)
Q Consensus 113 ~~r~iriSpKKlr~VarlIRGm~V~eAi~qL~fs~KKaAk~V~KlL~sA~aNA~~~~GlD-~d~L~I~ea~VnkG~~~KR 191 (270)
+.+++++||+|+++||++||||+|+||+.||+|+|+|+|++|+++|+||.+||++++||| +|+|||++||||+||++||
T Consensus 2 ~~~~ir~SpkK~r~va~~IrG~~v~eAl~~L~f~pkkaa~~v~klL~sA~aNA~~~~gld~~~~L~I~~~~v~~g~~~KR 81 (110)
T 2ftc_M 2 CRRQIKYSKDKMWYLAKLIRGMSIDQALAQLEFNDKKGAKIIKEVLLEAQDMAVRDHNVEFRSNLYIAESTSGRGQCLKR 81 (110)
T ss_pred CcccceeCHHHHHHHHHHHcCCcHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHhcCCCCccCeEEEEEEECCCCcccC
Confidence 468999999999999999999999999999999999999999999999999999889999 7999999999999999999
Q ss_pred ccccCCCCccccccCceeEEEEEEecCc
Q 040446 192 VSYHSKGRSGIKVRPECRLTVVVRELTA 219 (270)
Q Consensus 192 ~~pRARGRa~~irk~~~HItVVLkE~~~ 219 (270)
++||||||+++|++++|||+|+|+|.++
T Consensus 82 ~~prA~GRa~~i~k~~~HI~vvl~e~~~ 109 (110)
T 2ftc_M 82 IRYHGRGRFGIMEKVYCHYFVKLVEGPP 109 (110)
T ss_pred CCCCCCCCCCccccCCccEEEEEEeCCC
Confidence 9999999999999999999999999864
No 4
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ...
Probab=100.00 E-value=1.1e-38 Score=258.00 Aligned_cols=107 Identities=36% Similarity=0.483 Sum_probs=104.7
Q ss_pred eEEEEeCCCccCHHHHHHHHHHHcCCCHHHHHHHHhhchhhhHHHHHHHHHHHHHHhhHhCCCCCCCeEEEEEEecCCcc
Q 040446 109 KVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARANATHNHGLDPDRLLVAEAFVGKGFF 188 (270)
Q Consensus 109 evkA~~r~iriSpKKlr~VarlIRGm~V~eAi~qL~fs~KKaAk~V~KlL~sA~aNA~~~~GlD~d~L~I~ea~VnkG~~ 188 (270)
+++|.++++++||+|+++||++||||+|+||+.||+|+|+|+|++|+++|+||.+||++++|||+|+|||++||||+||+
T Consensus 2 ~~kA~~~~ir~SpkK~r~va~~IrG~~v~~Al~~L~~~pkkaa~~v~klL~sA~aNAe~n~gld~d~L~I~~~~v~~g~~ 81 (110)
T 1i4j_A 2 EAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNNHDALEDRLYVKAAYVDEGPA 81 (110)
T ss_dssp CEEEEEEEESSCHHHHHHHHHHHTTCBHHHHHHHHHHCCCTTHHHHHHHHHHHHHHHHHTSCCCGGGEEEEEEEEEEEEE
T ss_pred eEEEEeCCccCCHHHHHHHHHHHcCCcHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHhcCCChhheEEEEEEECCCCe
Confidence 58999999999999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred cccccccCCCCccccccCceeEEEEEEecC
Q 040446 189 KKRVSYHSKGRSGIKVRPECRLTVVVRELT 218 (270)
Q Consensus 189 ~KR~~pRARGRa~~irk~~~HItVVLkE~~ 218 (270)
++||||||+++|++++|||+|+|+|.+
T Consensus 82 ---~~pRA~GRa~~i~k~~~HItvvl~e~~ 108 (110)
T 1i4j_A 82 ---VLPRARGRADIIKKRTSHITVILGEKH 108 (110)
T ss_dssp ---ECSCSSSCCCSCCEEEEEEEEEEEESS
T ss_pred ---EeecCCCCCcccccCCeeEEEEEEecC
Confidence 999999999999999999999999974
No 5
>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ...
Probab=100.00 E-value=2e-36 Score=258.34 Aligned_cols=112 Identities=20% Similarity=0.266 Sum_probs=106.6
Q ss_pred ceEEEEeCCCccCHHHHHHHHHHHcCCCHHHHHHHHhh------------------------------chhhhHHHHHHH
Q 040446 108 AKVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQV------------------------------TIKRAAKTVYQV 157 (270)
Q Consensus 108 ~evkA~~r~iriSpKKlr~VarlIRGm~V~eAi~qL~f------------------------------s~KKaAk~V~Kl 157 (270)
.+++|.++++++||||+++||++||||++++|+.+|+| +|+|+|++|+++
T Consensus 13 k~~kA~~~~~rvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~gvg~~~~~~~~~~gr~PkKaa~~ilkl 92 (155)
T 1vq8_R 13 TTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRYPEKASKAFLDL 92 (155)
T ss_dssp GEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCTTCSSSSBEECCHHHHHHHHHH
T ss_pred ceEEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHHHHHhcceeccceeccCCCCccccccccccCCCcHHHHHHHHHH
Confidence 45899999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHhhHhCCCCCCCeEEEEEEecCCcccccccccCCCCccccccCceeEEEEEEecCcH
Q 040446 158 IHSARANATHNHGLDPDRLLVAEAFVGKGFFKKRVSYHSKGRSGIKVRPECRLTVVVRELTAE 220 (270)
Q Consensus 158 L~sA~aNA~~~~GlD~d~L~I~ea~VnkG~~~KR~~pRARGRa~~irk~~~HItVVLkE~~~~ 220 (270)
|+||.+||+++ |||+|+|||++|+||+||++||++|||+||+++|++++|||+|+|+|.+.+
T Consensus 93 L~sA~aNAe~k-gld~d~L~I~~i~v~kg~~~kR~~pRA~GRa~~~~k~~~HI~vil~E~~~~ 154 (155)
T 1vq8_R 93 LENAVGNADHQ-GFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELILEEPEVE 154 (155)
T ss_dssp HHHHHHHHHHT-TSCGGGSEEEEEEEEEEEEECCEEECGGGCEEECCEEEEEEEEEEECC---
T ss_pred HHHHHHHHHHc-CCChhheEEEEEEECCCccccCCCCCCCCCCCceeCCCccEEEEEEecCCC
Confidence 99999999976 999999999999999999999999999999999999999999999998543
No 6
>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=1.3e-37 Score=274.53 Aligned_cols=114 Identities=31% Similarity=0.473 Sum_probs=110.2
Q ss_pred ceEEEEeCCCccCHHHHHHHHHHHcCCCHHHHHHHHhhchhhhHHHHHHHHHHHHHHhhHhCCCCCCCeEEEEEEecCCc
Q 040446 108 AKVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARANATHNHGLDPDRLLVAEAFVGKGF 187 (270)
Q Consensus 108 ~evkA~~r~iriSpKKlr~VarlIRGm~V~eAi~qL~fs~KKaAk~V~KlL~sA~aNA~~~~GlD~d~L~I~ea~VnkG~ 187 (270)
.+++|.++++++||+|+++||++||||+|+||+.||+|+|+|+|.+|+++|+||++||++++|+|+|+|||++|+||+||
T Consensus 30 ~eakA~~r~iRvSpkK~R~Vad~IRG~~V~eAl~iL~f~PkKaA~~V~KlLkSA~ANAe~n~GLD~d~L~I~~i~VnkGp 109 (199)
T 3bbo_U 30 DEITTRGYSISMSVDKARRVIDQIRGRSYAETLMILELMPYRACYPIFKLIYSAAANASHNKQFNKANLIISKAEVNKGI 109 (199)
T ss_dssp CCBCCCCSCCSSCSSSSSTTHHHHTTCBTTTTTTTGGGCCCTTHHHHHHHHHHHTTHHHHTSSCCSSSCEEEECCCCBCC
T ss_pred eEEEEEeCCccccHHHHHHHHHHHCCCcHHHHHHHHHHCCHhHHHHHHHHHHHHHHhHHhccCCChhheEEEEEEECCCC
Confidence 35899999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred ccccccccCCCCccccccCceeEEEEEEecCcHH
Q 040446 188 FKKRVSYHSKGRSGIKVRPECRLTVVVRELTAEE 221 (270)
Q Consensus 188 ~~KR~~pRARGRa~~irk~~~HItVVLkE~~~~~ 221 (270)
++||++||||||+++|++++|||+|||+|.++++
T Consensus 110 ~lKR~~pRArGRa~~I~KrtsHItVVL~E~~~~~ 143 (199)
T 3bbo_U 110 TLKKVKPRARGRSYMILRPTCHITIVLRDITHFD 143 (199)
T ss_dssp CCCCCCCSSSSCSCCCCCCCBCCCCEEECCCCCC
T ss_pred cccCCCCCCCCCCCcccCCCccEEEEEeeCCchH
Confidence 9999999999999999999999999999987643
No 7
>3j21_S 50S ribosomal protein L22P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=3e-35 Score=251.09 Aligned_cols=110 Identities=28% Similarity=0.334 Sum_probs=106.7
Q ss_pred ceEEEEeCCCccCHHHHHHHHHHHcCCCHHHHHHHHhh-----------------------------chhhhHHHHHHHH
Q 040446 108 AKVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQV-----------------------------TIKRAAKTVYQVI 158 (270)
Q Consensus 108 ~evkA~~r~iriSpKKlr~VarlIRGm~V~eAi~qL~f-----------------------------s~KKaAk~V~KlL 158 (270)
.+++|.++++++||||+++||++||||++++|+.+|+| .|+|+|++|+++|
T Consensus 16 ~~akA~~~~~rvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~gvg~~~~~~~~~gr~PkKaa~~ilklL 95 (155)
T 3j21_S 16 RMARASARDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALKRPVPLKRYNDSQGHKPGKGFGPGRYPVKVAKAIKKVL 95 (155)
T ss_dssp HEEEEEEEEEESCHHHHHHHHHHHTTCBHHHHHHHHHHHHHTCSCEECCSSCTTCCBCCSSSCSBEECCHHHHHHHHHHH
T ss_pred eeEEEEeCCcccCHHHHHHHHHHHCCCcHHHHHHHHHHHHhcccceeeeeecCCCccccccCCCcCcCcHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999 8999999999999
Q ss_pred HHHHHHhhHhCCCCCCCeEEEEEEecCCcccccccccCCCCccccccCceeEEEEEEecC
Q 040446 159 HSARANATHNHGLDPDRLLVAEAFVGKGFFKKRVSYHSKGRSGIKVRPECRLTVVVRELT 218 (270)
Q Consensus 159 ~sA~aNA~~~~GlD~d~L~I~ea~VnkG~~~KR~~pRARGRa~~irk~~~HItVVLkE~~ 218 (270)
+||.+||+ ++|||+|+|||++|+||+||++||++|||+||+++|.+++|||+|||+|.+
T Consensus 96 ~sA~aNAe-~kgld~d~L~I~~i~vnkgp~~kR~~pRA~GR~~~~~k~~~HI~vil~E~~ 154 (155)
T 3j21_S 96 LNVKNNAV-QKGLDPDKLKIIHIAAHKGPVLRGWYPRAFGRATPFNEQTTHIEVVVEEIR 154 (155)
T ss_dssp HHHHHHHH-HHTCCGGGCEEEEEEEEEEEEECCEEECSTTCEEECCEEEEEEEEEEECCC
T ss_pred HHHHHHHH-HcCCChhheEEEEEEecCCCcccCCCCCCCCCCCceecCCccEEEEEEecc
Confidence 99999999 489999999999999999999999999999999999999999999999874
No 8
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.8e-34 Score=252.27 Aligned_cols=111 Identities=22% Similarity=0.336 Sum_probs=104.3
Q ss_pred ceEEEEeCCCccCHHHHHHHHHHHcCCCHHHHHHHHh----------h----------------------chhhhHHHHH
Q 040446 108 AKVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQ----------V----------------------TIKRAAKTVY 155 (270)
Q Consensus 108 ~evkA~~r~iriSpKKlr~VarlIRGm~V~eAi~qL~----------f----------------------s~KKaAk~V~ 155 (270)
.+++|.++++++||+|+++||++||||++++|+.+|+ | +|+|+|++|+
T Consensus 13 k~akA~~~~lrvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~VPF~r~~~gvg~~~q~~~~~~~~GR~PkKaa~~il 92 (184)
T 2zkr_r 13 KSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLL 92 (184)
T ss_dssp TEEEEEECSCCSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCCSTTSCSCSBEECCHHHHHHHH
T ss_pred eeEEEEecCccCcHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccceeccCCCcccccccccccccCCCcHHHHHHHH
Confidence 3589999999999999999999999999999999999 9 9999999999
Q ss_pred HHHHHHHHHhhHhCCCCCCCeEEEEEEecCCcccccccccCCCCccccccCceeEEEEEEecCc
Q 040446 156 QVIHSARANATHNHGLDPDRLLVAEAFVGKGFFKKRVSYHSKGRSGIKVRPECRLTVVVRELTA 219 (270)
Q Consensus 156 KlL~sA~aNA~~~~GlD~d~L~I~ea~VnkG~~~KR~~pRARGRa~~irk~~~HItVVLkE~~~ 219 (270)
++|+||.+||+++ |||+|+|||++|+||+||++||++|||+||+++|.+++|||+|+|+|.+.
T Consensus 93 klLksA~aNAe~k-glD~d~L~I~~i~Vnkg~~~kR~~pRA~GRa~p~~k~~~HI~vil~E~~~ 155 (184)
T 2zkr_r 93 HMLKNAESNAELK-GLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQ 155 (184)
T ss_dssp HHHHHHHHHHHHH-TSCTTTCEEEEEEEC-CCCEEEEEEETTTEEEEEEEC-CCEEEEEECC--
T ss_pred HHHHHHHHHHHHc-CCChhheEEEEEEECCCccCcCCCCCCCCCCCCccCCCceEEEEEEEcCc
Confidence 9999999999964 99999999999999999999999999999999999999999999999754
No 9
>3iz5_V 60S ribosomal protein L17 (L22P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_V
Probab=100.00 E-value=4.4e-34 Score=247.27 Aligned_cols=109 Identities=21% Similarity=0.313 Sum_probs=105.5
Q ss_pred ceEEEEeCCCccCHHHHHHHHHHHcCCCHHHHHHHHhh---------------------------------chhhhHHHH
Q 040446 108 AKVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQV---------------------------------TIKRAAKTV 154 (270)
Q Consensus 108 ~evkA~~r~iriSpKKlr~VarlIRGm~V~eAi~qL~f---------------------------------s~KKaAk~V 154 (270)
.+++|.++++++||||+++||++||||++++|+.+|+| .|+|+|++|
T Consensus 13 ~~akA~~~~lrvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~VPf~r~~~gvg~~~q~~~~~~~~~gr~PkKaa~~i 92 (171)
T 3iz5_V 13 KSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPAKSARFI 92 (171)
T ss_dssp TEEEEEEEEEESCHHHHHHHHHHSCSCCSHHHHHHHHHHHHTSSCEECSSCCSSCCCCSCCBTTBSCSCEECCHHHHHHH
T ss_pred eeEEEEeCCcccCHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCccccccccccccccccCCchHHHHHH
Confidence 46899999999999999999999999999999999997 499999999
Q ss_pred HHHHHHHHHHhhHhCCCCCCCeEEEEEEecCCcccccccccCCCCccccccCceeEEEEEEec
Q 040446 155 YQVIHSARANATHNHGLDPDRLLVAEAFVGKGFFKKRVSYHSKGRSGIKVRPECRLTVVVREL 217 (270)
Q Consensus 155 ~KlL~sA~aNA~~~~GlD~d~L~I~ea~VnkG~~~KR~~pRARGRa~~irk~~~HItVVLkE~ 217 (270)
+++|+||.+||++ +|||+|+|||++|+||+||++||++||||||+++|.+++|||+|+|+|.
T Consensus 93 lklL~sA~aNAe~-kglD~d~L~I~~i~vnkgp~~kR~~pRA~GRa~p~~k~~~HI~vil~E~ 154 (171)
T 3iz5_V 93 LDLLKNAESNAEV-KGLDVDTLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEK 154 (171)
T ss_dssp HHHHHHHHHHHHH-HTCCSSCCEEEEEEEEECCCBCCEEEETTTEEEECCBCEEEEEEEEETT
T ss_pred HHHHHHHHHHHHH-cCCChhheEEEEEEeccCCcccCCCCCCCCCCCcccCCCccEEEEEeec
Confidence 9999999999995 6999999999999999999999999999999999999999999999986
No 10
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I 2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 4b6a_P 1s1i_N 3izc_V 3izs_V 3jyw_N
Probab=100.00 E-value=6.5e-34 Score=248.70 Aligned_cols=111 Identities=23% Similarity=0.250 Sum_probs=106.7
Q ss_pred ceEEEEeCCCccCHHHHHHHHHHHcCCCHHHHHHHHhh--------------------------------chhhhHHHHH
Q 040446 108 AKVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQV--------------------------------TIKRAAKTVY 155 (270)
Q Consensus 108 ~evkA~~r~iriSpKKlr~VarlIRGm~V~eAi~qL~f--------------------------------s~KKaAk~V~ 155 (270)
.+++|.++++++||||+++||++||||++++|+.+|+| .|+|+|++|+
T Consensus 13 k~akA~~~~lrvS~kk~reva~~IRG~~v~~A~~~L~~V~~~k~~VPf~rf~~gvg~~~q~~~~g~~~GR~PkKaa~~il 92 (184)
T 3u5e_P 13 KSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPFRRFNSSIGRTAQGKEFGVTKARWPAKSVKFVQ 92 (184)
T ss_dssp GEEEEEEEEECSCHHHHHHHHTTTTTCBHHHHHHHHHHHHTTSSCEECCSSCTTCCCCGGGGGGTCSCEECCHHHHHHHH
T ss_pred ceEEEEeCCccccHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCCcccchhhccCCccCCCchHHHHHHH
Confidence 46899999999999999999999999999999999995 6999999999
Q ss_pred HHHHHHHHHhhHhCCCCCCCeEEEEEEecCCcccccccccCCCCccccccCceeEEEEEEecCc
Q 040446 156 QVIHSARANATHNHGLDPDRLLVAEAFVGKGFFKKRVSYHSKGRSGIKVRPECRLTVVVRELTA 219 (270)
Q Consensus 156 KlL~sA~aNA~~~~GlD~d~L~I~ea~VnkG~~~KR~~pRARGRa~~irk~~~HItVVLkE~~~ 219 (270)
++|+||.+||++ +|||+|+|||++|+||+||++||++|||+||+++|.+++|||+|||+|.+.
T Consensus 93 klLksA~aNAe~-kgLD~d~L~I~~i~Vnkgp~~kR~~pRA~GRa~p~~k~~~HI~vil~E~e~ 155 (184)
T 3u5e_P 93 GLLQNAAANAEA-KGLDATKLYVSHIQVNQAPKQRRRTYRAHGRINKYESSPSHIELVVTEKEE 155 (184)
T ss_dssp HHHHHHHHHHHH-TTCCTTTEEEEEEEEEECCCEEEEEEEGGGEEEEEEECCEEEEEEEEECCC
T ss_pred HHHHHHHHHHHH-cCCChhheEEEEEEECCCCcccCCCCCCCCCCCcccCCCccEEEEEeeccc
Confidence 999999999994 899999999999999999999999999999999999999999999998754
No 11
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Q 4a1c_Q 4a1e_Q
Probab=100.00 E-value=2.3e-33 Score=245.02 Aligned_cols=111 Identities=19% Similarity=0.326 Sum_probs=106.5
Q ss_pred ceEEEEeCCCccCHHHHHHHHHHHcCCCHHHHHHHHhh--------------------------------chhhhHHHHH
Q 040446 108 AKVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQV--------------------------------TIKRAAKTVY 155 (270)
Q Consensus 108 ~evkA~~r~iriSpKKlr~VarlIRGm~V~eAi~qL~f--------------------------------s~KKaAk~V~ 155 (270)
.+++|.++++++||+|+++||++||||++++|+.+|+| .|+|+|++|+
T Consensus 15 k~akA~~~~lrvS~kk~reva~~IRG~~v~~A~~~L~~V~~~K~~vPfrrynggvg~~~q~k~~g~~~Gr~PkKaa~~il 94 (183)
T 4a17_Q 15 KAVKTSASDLRVHFKNTYEVVRAIKGLNLENAKRYLKAVIDRKRCIPFTRFTGCIGRTAQAHEFGRTQGRWPVKSVKVIL 94 (183)
T ss_dssp SEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHTTSSCEECCSCCTTCCBCGGGGGTTCSBEECCHHHHHHHH
T ss_pred eeEEEEeCCccCchHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCcccchhhhhcCCccCcCcHHHHHHHH
Confidence 46899999999999999999999999999999999995 7999999999
Q ss_pred HHHHHHHHHhhHhCCCCCCCeEEEEEEecCCcccccccccCCCCccccccCceeEEEEEEecCc
Q 040446 156 QVIHSARANATHNHGLDPDRLLVAEAFVGKGFFKKRVSYHSKGRSGIKVRPECRLTVVVRELTA 219 (270)
Q Consensus 156 KlL~sA~aNA~~~~GlD~d~L~I~ea~VnkG~~~KR~~pRARGRa~~irk~~~HItVVLkE~~~ 219 (270)
++|+||.+||+ +.|||.|+|||++|+||+||++||++|||+||+++|.+++|||+|||.|.+.
T Consensus 95 klLksA~aNAe-~kgLD~d~L~I~hi~Vnkgp~~kR~~pRA~GRa~pi~k~~~HIeiil~Eke~ 157 (183)
T 4a17_Q 95 GLLDNLSANAQ-AKSLNTANLVIQHGQVNRAQKGRRRTYRAHGRINPYLNSGCHVEIFAQEVAA 157 (183)
T ss_dssp HHHHHHHHHTT-TTTCCSTTEEEEEEEEEECCCEEEEEEETTTEEEEEEECCEEEEEEEEECCC
T ss_pred HHHHHHHHHHH-hcCCChhheEEEEEEECCCCcccCcCccCCCCcCCccCCCCCEEEEEeeccc
Confidence 99999999999 5699999999999999999999999999999999999999999999999754
No 12
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=54.36 E-value=18 Score=28.95 Aligned_cols=60 Identities=17% Similarity=0.158 Sum_probs=46.2
Q ss_pred ceEEEEeCCCccCHHHHHHHHHHHcCCCHHHHHHH--------Hhhch--hhhHHHHHHHHHHHHHHhhH
Q 040446 108 AKVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQ--------LQVTI--KRAAKTVYQVIHSARANATH 167 (270)
Q Consensus 108 ~evkA~~r~iriSpKKlr~VarlIRGm~V~eAi~q--------L~fs~--KKaAk~V~KlL~sA~aNA~~ 167 (270)
..+.-....--+|.==+-.++++|.|++++||..+ |.+.| .+.|....+.|+.|+.+.+.
T Consensus 55 ~d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~~~~i~~~L~l~p~r~~Ca~La~~Al~~Al~~y~~ 124 (129)
T 3lvl_A 55 EDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKS 124 (129)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHHTTCCHHHHHTCCHHHHHHHHTCCGGGGHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHH
Confidence 34566677777787788999999999999999654 33333 56678888999999998764
No 13
>4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C*
Probab=39.69 E-value=26 Score=29.25 Aligned_cols=60 Identities=12% Similarity=0.124 Sum_probs=45.8
Q ss_pred ceEEEEeCCCccCHHHHHHHHHHHcCCCHHHHHHH--------Hhhc---hhhhHHHHHHHHHHHHHHhhH
Q 040446 108 AKVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQ--------LQVT---IKRAAKTVYQVIHSARANATH 167 (270)
Q Consensus 108 ~evkA~~r~iriSpKKlr~VarlIRGm~V~eAi~q--------L~fs---~KKaAk~V~KlL~sA~aNA~~ 167 (270)
..+......--+|.==+-.++++|.|++++||..+ |.-. ..+.|..-.+.|+.|+++...
T Consensus 49 ~D~~F~g~GCais~ASaS~mtelv~GKtleEA~~i~~~~i~~~L~glpp~Ri~CA~La~~AL~~Al~~y~~ 119 (153)
T 4eb5_C 49 EDIKFQTFGCAAAIATSSMATEMAKGKTIEEALKITRDAVAEALGGLPKQKMHCSNLAADALRRAIVDYFR 119 (153)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHHTTCBHHHHTTCCHHHHHHHHTCCCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCcHHHHHHHHHHHHHHcCCCHHHHHHhhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777778999999999999999743 2111 257788888999999998764
No 14
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=37.20 E-value=54 Score=23.65 Aligned_cols=41 Identities=24% Similarity=0.444 Sum_probs=23.0
Q ss_pred HcCCCHHHHHHHHhhchhhhHHHHHHHHHHHHHHhhHhCCCCCCCeEEEEEEecCCc
Q 040446 131 VRGMRVEDALLQLQVTIKRAAKTVYQVIHSARANATHNHGLDPDRLLVAEAFVGKGF 187 (270)
Q Consensus 131 IRGm~V~eAi~qL~fs~KKaAk~V~KlL~sA~aNA~~~~GlD~d~L~I~ea~VnkG~ 187 (270)
+.||+++||+..|. +.|..|...+....|.. -..|..|+|.
T Consensus 5 LHGl~v~eA~~~l~-----------~~l~~~~~~~~~~~g~~-----~v~II~GkG~ 45 (82)
T 3fau_A 5 LHGLHVDEALEHLM-----------RVLEKKTEEFKQNGGKP-----YLSVITGRGN 45 (82)
T ss_dssp CTTSCHHHHHHHHH-----------HHHHHHHHHHHHHCCCC-----EEEEECCC--
T ss_pred CCCCcHHHHHHHHH-----------HHHHHHHHHhhccCCce-----EEEEEECCCC
Confidence 46999999996664 45555555444334432 1235556653
No 15
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=35.53 E-value=14 Score=26.90 Aligned_cols=16 Identities=25% Similarity=0.576 Sum_probs=12.7
Q ss_pred HcCCCHHHHHHHHhhc
Q 040446 131 VRGMRVEDALLQLQVT 146 (270)
Q Consensus 131 IRGm~V~eAi~qL~fs 146 (270)
++=|+++||+.||+.+
T Consensus 10 ~kpMsveEAv~qmel~ 25 (65)
T 3ka5_A 10 IKPMSEEEAVLEMELL 25 (65)
T ss_dssp CSCBCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhC
Confidence 3458999999999754
No 16
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=33.50 E-value=16 Score=26.72 Aligned_cols=15 Identities=40% Similarity=0.594 Sum_probs=11.9
Q ss_pred cCCCHHHHHHHHhhc
Q 040446 132 RGMRVEDALLQLQVT 146 (270)
Q Consensus 132 RGm~V~eAi~qL~fs 146 (270)
+=|+++||+.||+.+
T Consensus 12 kpMsveEAv~qMel~ 26 (66)
T 3lyv_A 12 KPMDVEEARLQMELL 26 (66)
T ss_dssp CEECHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHcC
Confidence 447899999998764
No 17
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=33.34 E-value=18 Score=25.57 Aligned_cols=16 Identities=31% Similarity=0.565 Sum_probs=12.8
Q ss_pred HcCCCHHHHHHHHhhc
Q 040446 131 VRGMRVEDALLQLQVT 146 (270)
Q Consensus 131 IRGm~V~eAi~qL~fs 146 (270)
++=|+++||+.||+.+
T Consensus 10 ~kpmsveEAv~qmel~ 25 (57)
T 3k2t_A 10 LKPMDSEEAVLQMNLL 25 (57)
T ss_dssp -CCBCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhC
Confidence 4668999999999864
No 18
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=32.87 E-value=56 Score=27.08 Aligned_cols=58 Identities=14% Similarity=0.159 Sum_probs=43.9
Q ss_pred CceEEEEeCCCccCHHHHHHHHHHHcCCCHHHHHHHHhh-----------------------------chhhhHHHHHHH
Q 040446 107 PAKVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQV-----------------------------TIKRAAKTVYQV 157 (270)
Q Consensus 107 ~~evkA~~r~iriSpKKlr~VarlIRGm~V~eAi~qL~f-----------------------------s~KKaAk~V~Kl 157 (270)
-..++-.....-+|.==+-.++++|.|++++||+.+..- ...|.|..-.+.
T Consensus 55 I~d~~F~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~~f~~ml~~~~~~~~~~L~~l~~l~gv~~~p~R~~Ca~La~~A 134 (159)
T 1su0_B 55 IEDIAFAGNGCTISTASSSMMTDAVIGKSKEEALALADIFSEMVQGQENPAQKELGEAELLAGVAKFPQRIKCSTLAWNA 134 (159)
T ss_dssp EEEEEEEEECCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCGGGGGGGGGGGGGGGGGCHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCCCCchhhhchhhhhcCcccCcchhHHHHHHHHH
Confidence 345666777778888888999999999999999988541 024667777788
Q ss_pred HHHHHHH
Q 040446 158 IHSARAN 164 (270)
Q Consensus 158 L~sA~aN 164 (270)
|+.|+.+
T Consensus 135 l~~Al~~ 141 (159)
T 1su0_B 135 LKEAIKR 141 (159)
T ss_dssp HHHHHTC
T ss_pred HHHHHHh
Confidence 8888854
No 19
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=30.31 E-value=1e+02 Score=22.77 Aligned_cols=41 Identities=24% Similarity=0.444 Sum_probs=23.9
Q ss_pred HcCCCHHHHHHHHhhchhhhHHHHHHHHHHHHHHhhHhCCCCCCCeEEEEEEecCCc
Q 040446 131 VRGMRVEDALLQLQVTIKRAAKTVYQVIHSARANATHNHGLDPDRLLVAEAFVGKGF 187 (270)
Q Consensus 131 IRGm~V~eAi~qL~fs~KKaAk~V~KlL~sA~aNA~~~~GlD~d~L~I~ea~VnkG~ 187 (270)
+.||+++||+..|. +.|..|...+.+..|+. -..|..++|.
T Consensus 13 LHGl~v~eA~~~L~-----------~~L~~~~~~~~~~~g~~-----~v~IIhGkG~ 53 (96)
T 2d9i_A 13 LHGLHVDEALEHLM-----------RVLEKKTEEFKQNGGKP-----YLSVITGRGN 53 (96)
T ss_dssp CTTSCHHHHHHHHH-----------HHHHHHHHHHHHTTCCS-----EEEEECCCSG
T ss_pred CCCCCHHHHHHHHH-----------HHHHHHHHHHHhhCCCe-----EEEEEECcCC
Confidence 47999999996653 45555554333223432 2344556664
No 20
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=28.85 E-value=50 Score=26.93 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=31.6
Q ss_pred CceEEEEeCCCccCHHHHHHHHHHHcCCCHHHHHHHHh
Q 040446 107 PAKVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQ 144 (270)
Q Consensus 107 ~~evkA~~r~iriSpKKlr~VarlIRGm~V~eAi~qL~ 144 (270)
-..++-.....-+|.==+-.++++|.|++++||.....
T Consensus 56 I~d~~f~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~ 93 (147)
T 1xjs_A 56 VEDAKFEGEGCSISMASASMMTQAIKGKDIETALSMSK 93 (147)
T ss_dssp CCEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHHHHH
T ss_pred EEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 34566777777888888999999999999999998754
No 21
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=27.23 E-value=61 Score=26.93 Aligned_cols=63 Identities=14% Similarity=0.125 Sum_probs=47.4
Q ss_pred ceEEEEeCCCccCHHHHHHHHHHHcCCCHHHHHHHHhh-----------chhhhHHHHHHHHHHHHHHhhHhCC
Q 040446 108 AKVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQV-----------TIKRAAKTVYQVIHSARANATHNHG 170 (270)
Q Consensus 108 ~evkA~~r~iriSpKKlr~VarlIRGm~V~eAi~qL~f-----------s~KKaAk~V~KlL~sA~aNA~~~~G 170 (270)
..++-....--+|.==+-.++.+|.|++++||+.+..- ...+.|..-.+.|+.|+.++....+
T Consensus 54 ~d~~F~~~GCais~ASaS~mte~v~Gkt~~EA~~i~~~~i~e~Lg~l~p~R~~Ca~La~~Al~~Al~~y~~k~~ 127 (157)
T 2z7e_A 54 EDVRFKTFGCGSAIAVSSMLTEMVKGKPIQYALNLTYKDIFEELGGLPPQKIHCTNLGLETLHVAIKDYLMKQG 127 (157)
T ss_dssp EEEEEEEESCTTHHHHHHHHHHHHTTSBHHHHHHCCHHHHHHHHTCCCCSSCCTTCCHHHHHHHHHHHHHHTTT
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHhccHHHHhcccCcchhHhHHHHHHHHHHHHHHHHHhcC
Confidence 45666777778888888999999999999999874221 2246677778889999988875444
No 22
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=23.57 E-value=1.3e+02 Score=24.13 Aligned_cols=37 Identities=24% Similarity=0.295 Sum_probs=30.7
Q ss_pred ceEEEEeCCCccCHHHHHHHHHHHcCCCHHHHHHHHh
Q 040446 108 AKVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQ 144 (270)
Q Consensus 108 ~evkA~~r~iriSpKKlr~VarlIRGm~V~eAi~qL~ 144 (270)
..++-....--+|.==+-.++++|.|++++||.....
T Consensus 55 ~d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~~ 91 (138)
T 2qq4_A 55 ADIRFQGQGCAISTASASLMTEAVKGKKVAEALELSR 91 (138)
T ss_dssp EEEEEEEECCHHHHHHHHHHHHHHTTSBHHHHHHHHH
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 4556677777788888899999999999999998763
No 23
>2vkc_A NEDD4-binding protein 2; human BCL3 binding protein, alternative splicing, homologous recombination, mismatch repair, small MUTS related; NMR {Homo sapiens}
Probab=21.97 E-value=1.3e+02 Score=23.88 Aligned_cols=41 Identities=24% Similarity=0.444 Sum_probs=23.8
Q ss_pred HcCCCHHHHHHHHhhchhhhHHHHHHHHHHHHHHhhHhCCCCCCCeEEEEEEecCCc
Q 040446 131 VRGMRVEDALLQLQVTIKRAAKTVYQVIHSARANATHNHGLDPDRLLVAEAFVGKGF 187 (270)
Q Consensus 131 IRGm~V~eAi~qL~fs~KKaAk~V~KlL~sA~aNA~~~~GlD~d~L~I~ea~VnkG~ 187 (270)
+.||+++||+..|. +.|..|...+....|+. -..|..|+|.
T Consensus 58 LHGl~v~EA~~~L~-----------~fL~~a~~~~~~~~g~~-----~v~IIhGkG~ 98 (135)
T 2vkc_A 58 LHGLHVDEALEHLM-----------RVLEKKTEEFKQNGGKP-----YLSVITGRGN 98 (135)
T ss_dssp CTTCCHHHHHHHHH-----------HHHHHHHHHHHHTCCCS-----EEEEECCSCS
T ss_pred eCCCcHHHHHHHHH-----------HHHHHHHHHHHhhCCCe-----EEEEEECCCc
Confidence 46999999996653 45665554333334432 2345556664
Done!