Query 040446
Match_columns 270
No_of_seqs 184 out of 1151
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 13:35:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040446.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040446hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2zjrp1 d.55.1.1 (P:8-134) Rib 100.0 1.5E-38 1.1E-42 261.7 7.7 112 107-218 14-125 (127)
2 d1i4ja_ d.55.1.1 (A:) Ribosoma 100.0 1.8E-37 1.3E-41 249.4 11.0 107 109-218 2-108 (110)
3 d2gycq1 d.55.1.1 (Q:5-110) Rib 100.0 5.4E-39 4E-43 256.7 -10.0 106 112-217 1-106 (106)
4 d1vqor1 d.55.1.1 (R:1-150) Rib 100.0 4.1E-34 3E-38 240.3 9.6 109 107-216 11-149 (150)
5 d1r9pa_ d.224.1.2 (A:) NifU-li 81.9 1.4 0.0001 33.7 6.3 68 108-175 54-131 (134)
6 d1fs1b1 a.157.1.1 (B:86-140) C 40.5 7.7 0.00056 25.5 2.3 19 124-142 35-53 (55)
7 d1wfza_ d.224.1.2 (A:) Iron-su 38.5 18 0.0013 27.4 4.6 60 108-167 50-119 (130)
8 d2ouxa1 a.118.26.1 (A:6-135) M 32.1 16 0.0012 26.5 3.3 40 125-164 81-120 (130)
9 d1su0b_ d.224.1.2 (B:) IscU ho 25.5 58 0.0042 23.9 5.5 37 108-144 51-87 (136)
10 d1xjsa_ d.224.1.2 (A:) NifU {B 20.6 42 0.0031 25.1 3.8 38 107-144 56-93 (147)
No 1
>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus radiodurans [TaxId: 1299]}
Probab=100.00 E-value=1.5e-38 Score=261.68 Aligned_cols=112 Identities=35% Similarity=0.457 Sum_probs=108.1
Q ss_pred CceEEEEeCCCccCHHHHHHHHHHHcCCCHHHHHHHHhhchhhhHHHHHHHHHHHHHHhhHhCCCCCCCeEEEEEEecCC
Q 040446 107 PAKVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARANATHNHGLDPDRLLVAEAFVGKG 186 (270)
Q Consensus 107 ~~evkA~~r~iriSpKKlr~VarlIRGm~V~eAi~qL~fs~KKaAk~V~KlL~sA~aNA~~~~GlD~d~L~I~ea~VnkG 186 (270)
.+++.|..+++++||+|+++||++||||+|+||+.||+|+++|+|..|.++|+||++||++++|+|+|+|||++||||+|
T Consensus 14 ~~~~~A~~k~ir~Sp~K~r~v~~~IrG~~v~eAl~~L~f~~kkaa~~v~k~l~sA~aNA~~~~~~d~~~L~I~~~~v~~G 93 (127)
T d2zjrp1 14 RKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLRFIPRSASEPVAKVLNSAKANALHNDEMLEDRLFVKEAYVDAG 93 (127)
T ss_dssp CCTTEEEEEEESSCHHHHHHHHHHSTTSBHHHHHHHHHHCCCTTHHHHHHHHTTTHHHHTTTTCCCGGGEEEEEEEEEEC
T ss_pred cchhhhhhcccccCHHHHHHHHHHHcCCcHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHhcccCcccceEEEEEEECCC
Confidence 34567889999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred cccccccccCCCCccccccCceeEEEEEEecC
Q 040446 187 FFKKRVSYHSKGRSGIKVRPECRLTVVVRELT 218 (270)
Q Consensus 187 ~~~KR~~pRARGRa~~irk~~~HItVVLkE~~ 218 (270)
|++||++||||||+++|++++|||+|+|+|..
T Consensus 94 ~~~KR~~prArGRa~~i~k~~sHi~VvL~e~~ 125 (127)
T d2zjrp1 94 PTLKRLIPRARGSANIIKKRTSHITIIVAEKG 125 (127)
T ss_dssp CCEEEEEECSTTCEEEEEECCEEEEEEEEECC
T ss_pred CcccCCCCCcCCCCCcccCCcccEEEEEEecC
Confidence 99999999999999999999999999999975
No 2
>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]}
Probab=100.00 E-value=1.8e-37 Score=249.40 Aligned_cols=107 Identities=36% Similarity=0.467 Sum_probs=103.9
Q ss_pred eEEEEeCCCccCHHHHHHHHHHHcCCCHHHHHHHHhhchhhhHHHHHHHHHHHHHHhhHhCCCCCCCeEEEEEEecCCcc
Q 040446 109 KVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARANATHNHGLDPDRLLVAEAFVGKGFF 188 (270)
Q Consensus 109 evkA~~r~iriSpKKlr~VarlIRGm~V~eAi~qL~fs~KKaAk~V~KlL~sA~aNA~~~~GlD~d~L~I~ea~VnkG~~ 188 (270)
+++|..+++++||+|+++||++||||+|+||+.||+|+++|+|+.|+++|+||++||++++|+|+|+|||+++|||+||+
T Consensus 2 e~~A~~k~ir~Sp~K~r~va~~IrG~~v~~Al~~L~f~~~kaa~~i~k~l~SA~aNA~~~~~~d~~~L~I~~~~v~~G~~ 81 (110)
T d1i4ja_ 2 EAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNNHDALEDRLYVKAAYVDEGPA 81 (110)
T ss_dssp CEEEEEEEESSCHHHHHHHHHHHTTCBHHHHHHHHHHCCCTTHHHHHHHHHHHHHHHHHTSCCCGGGEEEEEEEEEEEEE
T ss_pred cEEEEcCccccCHHHHHHHHHHHcCCcHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHhccCCCccceEEEEEEECCCce
Confidence 58999999999999999999999999999999999999999999999999999999998999999999999999999998
Q ss_pred cccccccCCCCccccccCceeEEEEEEecC
Q 040446 189 KKRVSYHSKGRSGIKVRPECRLTVVVRELT 218 (270)
Q Consensus 189 ~KR~~pRARGRa~~irk~~~HItVVLkE~~ 218 (270)
+| ||||||+++|++|+|||+|+|+|.+
T Consensus 82 ~k---~rarGRa~~i~k~~sHi~vvL~e~~ 108 (110)
T d1i4ja_ 82 VL---PRARGRADIIKKRTSHITVILGEKH 108 (110)
T ss_dssp EC---SCSSSCCCSCCEEEEEEEEEEEESS
T ss_pred EC---hhhccCCCcccCCcccEEEEEeecC
Confidence 75 8999999999999999999999975
No 3
>d2gycq1 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=5.4e-39 Score=256.72 Aligned_cols=106 Identities=41% Similarity=0.490 Sum_probs=103.5
Q ss_pred EEeCCCccCHHHHHHHHHHHcCCCHHHHHHHHhhchhhhHHHHHHHHHHHHHHhhHhCCCCCCCeEEEEEEecCCccccc
Q 040446 112 AVLKGIKQSPKKINLVAALVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARANATHNHGLDPDRLLVAEAFVGKGFFKKR 191 (270)
Q Consensus 112 A~~r~iriSpKKlr~VarlIRGm~V~eAi~qL~fs~KKaAk~V~KlL~sA~aNA~~~~GlD~d~L~I~ea~VnkG~~~KR 191 (270)
|..+++++||+|+++||++||||+|+||+.||+|+++|+|+.|.|+|+||++||++++|+|+|+|||+++|||+||++||
T Consensus 1 A~~k~ir~Sp~K~r~va~~IrG~~v~~A~~~L~f~~kkaa~~i~k~l~sA~aNA~~~~~~d~~~L~I~~~~v~~G~~~KR 80 (106)
T d2gycq1 1 AKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKR 80 (106)
T ss_dssp CCCCCCCCCSSSSCSSSSSSSSSCSHHHHSSSSSCCSSTTSSTTTSSSSSSTTTSTTTTCCTTTEEECCCCCCCCCBCCC
T ss_pred CCcCccccCHHHHHHHHHHHcCCcHHHHHHHHccCCcccchHHHHHHHHHHHHHHHhcCCCHHHhEEEEEEECCCCcccC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccccccCceeEEEEEEec
Q 040446 192 VSYHSKGRSGIKVRPECRLTVVVREL 217 (270)
Q Consensus 192 ~~pRARGRa~~irk~~~HItVVLkE~ 217 (270)
++||||||+++|++|+|||+|+|+|.
T Consensus 81 ~~~rarGRa~~i~k~~sHi~vvL~Ek 106 (106)
T d2gycq1 81 IMPRAKGRADRILKRTSHITVVVSDR 106 (106)
T ss_dssp BCCCTTTCCCBCCCBCCCCCCCEEEC
T ss_pred cCCcccCCCCcccCCCccEEEEEecC
Confidence 99999999999999999999999984
No 4
>d1vqor1 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=100.00 E-value=4.1e-34 Score=240.30 Aligned_cols=109 Identities=18% Similarity=0.247 Sum_probs=104.4
Q ss_pred CceEEEEeCCCccCHHHHHHHHHHHcCCCHHHHHHHHh------------------------------hchhhhHHHHHH
Q 040446 107 PAKVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQ------------------------------VTIKRAAKTVYQ 156 (270)
Q Consensus 107 ~~evkA~~r~iriSpKKlr~VarlIRGm~V~eAi~qL~------------------------------fs~KKaAk~V~K 156 (270)
..+++|..+++++||||+++||++||||+|+||+.||+ |.|+|+|+.|++
T Consensus 11 ~~~~kA~~~~~riS~kK~~~va~~IrGk~v~~A~~~L~~v~~kk~avp~~~~~~~v~~~~~~~~~~~g~~p~kaa~~i~k 90 (150)
T d1vqor1 11 DTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRYPEKASKAFLD 90 (150)
T ss_dssp TTEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCTTCSSCSBEECCHHHHHHHHH
T ss_pred CceEEEEeCCCcCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhcCCCcccChHHHHHHHHH
Confidence 34799999999999999999999999999999999998 457899999999
Q ss_pred HHHHHHHHhhHhCCCCCCCeEEEEEEecCCcccccccccCCCCccccccCceeEEEEEEe
Q 040446 157 VIHSARANATHNHGLDPDRLLVAEAFVGKGFFKKRVSYHSKGRSGIKVRPECRLTVVVRE 216 (270)
Q Consensus 157 lL~sA~aNA~~~~GlD~d~L~I~ea~VnkG~~~KR~~pRARGRa~~irk~~~HItVVLkE 216 (270)
+|+||.+||+ +.|+|+|+|||++||||+|+++||++||||||++++++++|||+|||+|
T Consensus 91 ll~sa~aNA~-~~~~d~~~L~I~~~~v~kG~~~KR~~prArGRa~~i~k~~~hi~vvL~E 149 (150)
T d1vqor1 91 LLENAVGNAD-HQGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELILEE 149 (150)
T ss_dssp HHHHHHHHHH-HTTSCGGGSEEEEEEEEEEEEECCEEECGGGCEEECCEEEEEEEEEEEC
T ss_pred HHHHHHHHHH-hcCCChhHeEEEEEEECCCccccCcCcccCCCCCCccCCCceEEEEEeC
Confidence 9999999998 5799999999999999999999999999999999999999999999998
No 5
>d1r9pa_ d.224.1.2 (A:) NifU-like protein HI0377 {Haemophilus influenzae [TaxId: 727]}
Probab=81.92 E-value=1.4 Score=33.67 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=55.7
Q ss_pred ceEEEEeCCCccCHHHHHHHHHHHcCCCHHHHHHHHhh----------chhhhHHHHHHHHHHHHHHhhHhCCCCCCC
Q 040446 108 AKVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQV----------TIKRAAKTVYQVIHSARANATHNHGLDPDR 175 (270)
Q Consensus 108 ~evkA~~r~iriSpKKlr~VarlIRGm~V~eAi~qL~f----------s~KKaAk~V~KlL~sA~aNA~~~~GlD~d~ 175 (270)
..++..+..--+|.==+-.++.+|.|++++||..+-.. ...+.|....+.|+.|+++.+...|++..+
T Consensus 54 ~di~f~~~GCais~Asas~~~e~i~Gkt~~ea~~i~~~~i~e~l~~~p~r~~Ca~L~~~al~~al~~y~~k~g~~~~~ 131 (134)
T d1r9pa_ 54 EDAKFKTYGCGSAIASSSLITEWVKGKSLEEAGAIKNSQIAEELELPPVKVHCSILAEDAIKAAIADYKAKQGLEHHH 131 (134)
T ss_dssp EEEEEEEESSSSHHHHHHHHHHHSSSSBHHHHTTSHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHHTTTCCCSC
T ss_pred EEEEEEeccCcccHhHHHHHHHHHHhCCHHHHHHhcchHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHhcCCchhh
Confidence 35677778888888889999999999999999765322 236889999999999999999888988653
No 6
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.45 E-value=7.7 Score=25.49 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=14.9
Q ss_pred HHHHHHHHcCCCHHHHHHH
Q 040446 124 INLVAALVRGMRVEDALLQ 142 (270)
Q Consensus 124 lr~VarlIRGm~V~eAi~q 142 (270)
...||++|+||+++|=-.+
T Consensus 35 c~~vA~~ikgKt~eeiR~~ 53 (55)
T d1fs1b1 35 CKTVANMIKGKTPEEIRKT 53 (55)
T ss_dssp HHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHH
Confidence 3578999999999985443
No 7
>d1wfza_ d.224.1.2 (A:) Iron-sulfur cluster protein U (IscU) {Mouse (Mus musculus), mitochondrial [TaxId: 10090]}
Probab=38.46 E-value=18 Score=27.44 Aligned_cols=60 Identities=18% Similarity=0.125 Sum_probs=48.2
Q ss_pred ceEEEEeCCCccCHHHHHHHHHHHcCCCHHHHHHH-----Hhh-----chhhhHHHHHHHHHHHHHHhhH
Q 040446 108 AKVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQ-----LQV-----TIKRAAKTVYQVIHSARANATH 167 (270)
Q Consensus 108 ~evkA~~r~iriSpKKlr~VarlIRGm~V~eAi~q-----L~f-----s~KKaAk~V~KlL~sA~aNA~~ 167 (270)
.+++.....--+|.==+-.++.++.||+++||..+ +++ +..+.|..-.+.|+.|+++.+.
T Consensus 50 ~di~F~~~GC~is~AsaS~~tel~~Gkt~~ea~~i~~~~i~~~l~l~p~R~~CA~La~~aL~~Al~~y~~ 119 (130)
T d1wfza_ 50 VDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKL 119 (130)
T ss_dssp EEEEEECCSCHHHHHHHHHHHHHHTTSBHHHHHHCCHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeeCCchhHHHHHHHHHHHhccCHHHHHhcCcHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 45677788888888889999999999999998754 121 2468889999999999998764
No 8
>d2ouxa1 a.118.26.1 (A:6-135) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}
Probab=32.13 E-value=16 Score=26.51 Aligned_cols=40 Identities=18% Similarity=0.206 Sum_probs=32.9
Q ss_pred HHHHHHHcCCCHHHHHHHHhhchhhhHHHHHHHHHHHHHH
Q 040446 125 NLVAALVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARAN 164 (270)
Q Consensus 125 r~VarlIRGm~V~eAi~qL~fs~KKaAk~V~KlL~sA~aN 164 (270)
..+++.|..|+.+||..+|.-.+...+..|+..|......
T Consensus 81 ~~~a~il~~m~~DDaadll~~L~~~~~~~iL~~l~~~~r~ 120 (130)
T d2ouxa1 81 SYAADMLAEMYTDNAVDLLNMLDKSQKAKYLSLLSSEEAG 120 (130)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHcChHHHHHHHHHCCHHHHHHHHHcCCHHHHH
Confidence 4577888999999999999999998888888877655433
No 9
>d1su0b_ d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus pyogenes [TaxId: 1314]}
Probab=25.51 E-value=58 Score=23.88 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=30.6
Q ss_pred ceEEEEeCCCccCHHHHHHHHHHHcCCCHHHHHHHHh
Q 040446 108 AKVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQ 144 (270)
Q Consensus 108 ~evkA~~r~iriSpKKlr~VarlIRGm~V~eAi~qL~ 144 (270)
..+...+..--+|.==+-.++++|.|+++++|.....
T Consensus 51 ~di~f~~~GCai~~ASasil~e~i~gk~~~e~~~l~~ 87 (136)
T d1su0b_ 51 EDIAFAGNGCTISTASSSMMTDAVIGKSKEEALALAD 87 (136)
T ss_dssp EEEEEEEECCHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred eEEEEEeccCHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4566677777788888899999999999999988754
No 10
>d1xjsa_ d.224.1.2 (A:) NifU {Bacillus subtilis [TaxId: 1423]}
Probab=20.58 E-value=42 Score=25.11 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=31.8
Q ss_pred CceEEEEeCCCccCHHHHHHHHHHHcCCCHHHHHHHHh
Q 040446 107 PAKVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQ 144 (270)
Q Consensus 107 ~~evkA~~r~iriSpKKlr~VarlIRGm~V~eAi~qL~ 144 (270)
-..+......--+|.==+-.+++.|.|+++++|+....
T Consensus 56 I~d~~f~~~GCai~~ASasil~e~~~gk~~~~a~~l~~ 93 (147)
T d1xjsa_ 56 VEDAKFEGEGCSISMASASMMTQAIKGKDIETALSMSK 93 (147)
T ss_dssp CCEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHHHHH
T ss_pred eEEEEeeecccHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34566777777888888999999999999999998765
Done!