RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 040446
(270 letters)
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial
ribosome, large ribosomal subunit, ribosomal R ribosome;
12.10A {Bos taurus} PDB: 3iy9_M
Length = 110
Score = 136 bits (346), Expect = 3e-41
Identities = 36/105 (34%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Query: 115 KGIKQSPKKINLVAALVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARANATHNHGLD-P 173
+ IK S K+ +A L+RGM ++ AL QL+ K+ AK + +V+ A+ A +H ++
Sbjct: 4 RQIKYSKDKMWYLAKLIRGMSIDQALAQLEFNDKKGAKIIKEVLLEAQDMAVRDHNVEFR 63
Query: 174 DRLLVAEAFVGKGFFKKRVSYHSKGRSGIKVRPECRLTVVVRELT 218
L +AE+ G+G KR+ YH +GR GI + C V + E
Sbjct: 64 SNLYIAESTSGRGQCLKRIRYHGRGRFGIMEKVYCHYFVKLVEGP 108
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S
2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S
2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...
Length = 110
Score = 121 bits (307), Expect = 2e-35
Identities = 43/107 (40%), Positives = 61/107 (57%)
Query: 110 VQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARANATHNH 169
A + + S +K+ LVA L+RG +V AL L T K+AA V +V+ SA ANA HN
Sbjct: 3 TIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHND 62
Query: 170 GLDPDRLLVAEAFVGKGFFKKRVSYHSKGRSGIKVRPECRLTVVVRE 216
G D D L V + FV +G KR+ +KGR+ ++ +TVVV +
Sbjct: 63 GADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSD 109
>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 199
Score = 123 bits (310), Expect = 8e-35
Identities = 36/120 (30%), Positives = 65/120 (54%)
Query: 105 SKPAKVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARAN 164
K ++ I S K V +RG + L+ L++ RA ++++I+SA AN
Sbjct: 27 GKCDEITTRGYSISMSVDKARRVIDQIRGRSYAETLMILELMPYRACYPIFKLIYSAAAN 86
Query: 165 ATHNHGLDPDRLLVAEAFVGKGFFKKRVSYHSKGRSGIKVRPECRLTVVVRELTAEEEAQ 224
A+HN + L++++A V KG K+V ++GRS + +RP C +T+V+R++T +
Sbjct: 87 ASHNKQFNKANLIISKAEVNKGITLKKVKPRARGRSYMILRPTCHITIVLRDITHFDSYD 146
>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L*
1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q*
2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P*
1pnu_Q 1pny_Q 1vor_T ...
Length = 134
Score = 117 bits (295), Expect = 3e-33
Identities = 41/120 (34%), Positives = 68/120 (56%)
Query: 97 KADDQKVVSKPAKVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQVTIKRAAKTVYQ 156
K ++ V AV K ++ SP+K+ LV ++RG V+DA L+ + A++ V +
Sbjct: 11 KKQRKQQVKLRKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLRFIPRSASEPVAK 70
Query: 157 VIHSARANATHNHGLDPDRLLVAEAFVGKGFFKKRVSYHSKGRSGIKVRPECRLTVVVRE 216
V++SA+ANA HN + DRL V EA+V G KR+ ++G + I + +T++V E
Sbjct: 71 VLNSAKANALHNDEMLEDRLFVKEAYVDAGPTLKRLIPRARGSANIIKKRTSHITIIVAE 130
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA
binding, RNA binding protein; 1.80A {Thermus
thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s*
1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V
2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W
2wdj_W ...
Length = 110
Score = 114 bits (289), Expect = 1e-32
Identities = 39/108 (36%), Positives = 62/108 (57%), Gaps = 5/108 (4%)
Query: 110 VQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARANATHNH 169
+A+ + ++ SP+K+ LV L+RG +E+A L+ T KR A V +V+ SA ANA +NH
Sbjct: 3 AKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNNH 62
Query: 170 GLDPDRLLVAEAFVGKG-FFKKRVSYHSKGRSGIKVRPECRLTVVVRE 216
DRL V A+V +G R ++GR+ I + +TV++ E
Sbjct: 63 DALEDRLYVKAAYVDEGPAVLPR----ARGRADIIKKRTSHITVILGE 106
>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R*
1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R*
1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R*
1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ...
Length = 155
Score = 76.8 bits (189), Expect = 1e-17
Identities = 22/142 (15%), Positives = 52/142 (36%), Gaps = 31/142 (21%)
Query: 110 VQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQVTI---------------------- 147
+A+L+ + S K +A ++G +A+ L+ I
Sbjct: 15 AKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVD 74
Query: 148 --------KRAAKTVYQVIHSARANATHNHGLDPDRLLVAEAFVGKGFFKKRVSYHSKGR 199
++A+K ++ +A NA + G D + + + K ++ + GR
Sbjct: 75 GWDAGRYPEKASKAFLDLLENAVGNA-DHQGFDGEAMTIKHVAAHKVGEQQGRKPRAMGR 133
Query: 200 SGIKVRPECRLTVVVRELTAEE 221
+ P+ + +++ E E+
Sbjct: 134 ASAWNSPQVDVELILEEPEVED 155
>3iz5_V 60S ribosomal protein L17 (L22P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_V
Length = 171
Score = 74.9 bits (184), Expect = 1e-16
Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 36/145 (24%)
Query: 105 SKPAKVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQVTI----------------- 147
+K +K A+ + ++ K A +R + + A L+ I
Sbjct: 12 TKSSK--AMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPFRRYCGGVGR 69
Query: 148 ----------------KRAAKTVYQVIHSARANATHNHGLDPDRLLVAEAFVGKGFFKKR 191
++A+ + ++ +A +NA GLD D L V+ V + ++R
Sbjct: 70 TAQAKSRHSNGQGRWPAKSARFILDLLKNAESNAE-VKGLDVDTLYVSHIQVNQAQKQRR 128
Query: 192 VSYHSKGRSGIKVRPECRLTVVVRE 216
+Y + GR + C + +++ E
Sbjct: 129 RTYRAHGRINPYMSSPCHIELILSE 153
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_Q 4a1c_Q 4a1e_Q
Length = 183
Score = 72.3 bits (177), Expect = 1e-15
Identities = 26/171 (15%), Positives = 58/171 (33%), Gaps = 35/171 (20%)
Query: 105 SKPAKVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQVTI----------------- 147
+K K ++ K V ++G+ +E+A L+ I
Sbjct: 14 AKAVK--TSASDLRVHFKNTYEVVRAIKGLNLENAKRYLKAVIDRKRCIPFTRFTGCIGR 71
Query: 148 ---------------KRAAKTVYQVIHSARANATHNHGLDPDRLLVAEAFVGKGFFKKRV 192
++ K + ++ + ANA L+ L++ V + +R
Sbjct: 72 TAQAHEFGRTQGRWPVKSVKVILGLLDNLSANAQA-KSLNTANLVIQHGQVNRAQKGRRR 130
Query: 193 SYHSKGRSGIKVRPECRLTVVVRELTAEEEAQIARLRVHKFRKLTKREQRL 243
+Y + GR + C + + +E+ A+ + + K K K + +
Sbjct: 131 TYRAHGRINPYLNSGCHVEIFAQEVAAKVRKEAPKDAAKKVPKTKKGKLAI 181
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I
2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V
3jyw_N
Length = 184
Score = 71.5 bits (175), Expect = 2e-15
Identities = 31/173 (17%), Positives = 61/173 (35%), Gaps = 39/173 (22%)
Query: 105 SKPAKVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQVTI----------------- 147
+K A A ++ S K A + G + A L+ +
Sbjct: 12 AKSAS--ARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPFRRFNSSIGR 69
Query: 148 ---------------KRAAKTVYQVIHSARANATHNHGLDPDRLLVAEAFVGKGFFKKRV 192
++ K V ++ +A ANA GLD +L V+ V + ++R
Sbjct: 70 TAQGKEFGVTKARWPAKSVKFVQGLLQNAAANAE-AKGLDATKLYVSHIQVNQAPKQRRR 128
Query: 193 SYHSKGRSGIKVRPECRLTVVVRE----LTAEEEAQIARLRVHKFRKLTKREQ 241
+Y + GR + +VV E + E ++ RL + ++ +++
Sbjct: 129 TYRAHGRINKYESSPSHIELVVTEKEEAVAKAAEKKVVRLTSRQRGRIAAQKR 181
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 70.3 bits (172), Expect = 5e-15
Identities = 31/178 (17%), Positives = 68/178 (38%), Gaps = 40/178 (22%)
Query: 105 SKPAKVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQVTI----------------- 147
+K K + ++ K A ++GM + A L+
Sbjct: 12 TKSCK--SRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGR 69
Query: 148 ---------------KRAAKTVYQVIHSARANATHNHGLDPDRLLVAEAFVGKGFFKKRV 192
K++A+ + ++ +A +NA GLD D L++ V K +R
Sbjct: 70 CAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAEL-KGLDVDSLVIEHIQVNKAPKMRRR 128
Query: 193 SYHSKGRSGIKVRPECRLTVVVRELTAEEEAQIARLRVHKFRKLTKRE---QRLVPHQ 247
+Y + GR + C + +++ E E+ V + +K+++++ Q+L+ +
Sbjct: 129 TYRAHGRINPYMSSPCHIEMILTE--KEQIVPKPEEEVAQKKKISQKKLKKQKLMARE 184
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 1e-04
Identities = 41/265 (15%), Positives = 79/265 (29%), Gaps = 85/265 (32%)
Query: 22 NYTASANF----YSSRLQSSLLH--------------GQ------LLHIQNLWTSPSTNI 57
NY + + + S+L GQ +++L+
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY-----QT 179
Query: 58 SRPLYQYLQQLGISSTRKLLANSSDETPVSSPLLAIESGKADDQKVVSKPAKVQAVLKGI 117
L + L I + + L+ T D +KV ++ + L+
Sbjct: 180 YHVL---VGDL-IKFSAETLSELIRTTL-------------DAEKVFTQGLNILEWLENP 222
Query: 118 KQSPKKINLVAALVR----GMRVEDALLQL---QVTIKRAAKTVYQVIHSARANATHNHG 170
+P K L++ + G ++QL VT K T ++ + H+ G
Sbjct: 223 SNTPDKDYLLSIPISCPLIG------VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Query: 171 LDPDRLLVAEAFVGKGFFKK-----RVSYHSKGRSGIKVRPECRLT-------------- 211
L + +AE + FF V + G + P L
Sbjct: 277 L-VTAVAIAETDSWESFFVSVRKAITVLFFI-GVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 212 ----VVVRELTAEE-EAQIARLRVH 231
+ + LT E+ + + + H
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSH 359
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 39.5 bits (91), Expect = 3e-04
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 8/33 (24%)
Query: 63 QYLQQLGISSTRKLLANSSDETPVSSPLLAIES 95
Q L++L ++ KL A S+P LAI++
Sbjct: 20 QALKKL--QASLKLYA------DDSAPALAIKA 44
Score = 27.6 bits (60), Expect = 2.7
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Query: 118 KQSPKKINLVAALVRGMRVEDA--LLQLQVTIK 148
KQ+ KK L A+L + +D+ L ++ T++
Sbjct: 19 KQALKK--LQASL--KLYADDSAPALAIKATME 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.003
Identities = 30/286 (10%), Positives = 74/286 (25%), Gaps = 82/286 (28%)
Query: 6 RHLQPVLCQVGKILGHNYTASANFYSSRLQSSLLHGQ----LLHIQNLWTSPSTNISRPL 61
+ P N + + L+ L LL + N+ +
Sbjct: 207 YQIDPNWTSRSDH-SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--------- 256
Query: 62 YQYLQQLGISS-----TR-KLLANS-SDETPVSSPLLAIESGKADDQ------KVVSKPA 108
+ +S TR K + + S T L D+ K +
Sbjct: 257 -KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 109 K---VQAVLKGIKQSPKKINLVAALVRGMRVEDALLQ--LQVTIKRAAKTVYQVIHSARA 163
+ + + +P++++++A +R A V + + ++
Sbjct: 316 QDLPREVL----TTNPRRLSIIAESIRDGL---ATWDNWKHVNCDKLTTIIESSLNV--- 365
Query: 164 NATHNHGLDPDRLLVAEAFVGKGFFKKRVSYHSKGRSGIKVRPECRLTVVVRELTAEEEA 223
L+P + F F + P L+++ ++ +
Sbjct: 366 -------LEPA--EYRKMFDRLSVFPPSA----------HI-PTILLSLIWFDVIKSDVM 405
Query: 224 QIA----------------RLRVHK--FRKLTKREQRLVPHQ-LIE 250
+ + + K E H+ +++
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Score = 31.4 bits (70), Expect = 0.39
Identities = 18/132 (13%), Positives = 35/132 (26%), Gaps = 34/132 (25%)
Query: 136 VEDALLQLQVTIKRAAKTVYQVIHSARANATHNHGLDPDRLL---------VAEAFVGK- 185
V+D + K + + T RL + + FV +
Sbjct: 38 VQDMPKS--ILSKEEIDHIIMSKD--AVSGT-------LRLFWTLLSKQEEMVQKFVEEV 86
Query: 186 -----GFFKKRVSYHSKGRSGIKVR-PECR--LTVVVRELTAEEEAQIARLRVHKFRKLT 237
F + + S + E R L + + R+ + KL
Sbjct: 87 LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA-----KYNVSRLQPYLKLR 141
Query: 238 KREQRLVPHQLI 249
+ L P + +
Sbjct: 142 QALLELRPAKNV 153
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding,
nucleotide-binding, DN protein; 1.70A {Thermus
thermophilus}
Length = 83
Score = 27.9 bits (63), Expect = 0.86
Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 131 VRGMRVEDALLQLQVTIKRAAKTVYQ---VIH 159
+RG+ V +ALL++ ++ A ++H
Sbjct: 9 LRGLTVAEALLEVDQALEEARALGLSTLRLLH 40
>3cji_C Polyprotein; virus capsid protein structure, ATP-binding,
cytoplasm, cytoplasmic vesicle, helicase, hydrolase,
membrane, nucleotide-binding; 2.30A {Seneca valley
virus}
Length = 284
Score = 27.2 bits (60), Expect = 5.2
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 173 PDRLLVAEAFVGKGFFKKRVSYHSKGRSGIKVRPEC 208
P L + + G F + H + G +V+ +C
Sbjct: 86 PGAFLSRQGGLNGGAFTATLHRHFLMKCGWQVQVQC 121
>1m4j_A A6 gene product, twinfilin; mixed beta-sheet, PAIR of
alpha-helices, structural protein; 1.60A {Mus musculus}
SCOP: d.109.1.2
Length = 142
Score = 26.5 bits (58), Expect = 5.6
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 15/59 (25%)
Query: 200 SGIKVRPECRLTVVVRELTAEEEAQIARLRVHKFR--KLTKREQRLVPHQLIETTPIWN 256
+GI+ + + AR R K+R K++ ++LV + W
Sbjct: 5 TGIQASEDVK-------------EIFARARNGKYRLLKISIENEQLVVGSCSPPSDSWE 50
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2, protein structure
initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Length = 322
Score = 27.1 bits (61), Expect = 7.1
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 235 KLTKREQRLVPHQLI 249
K+T E VPH LI
Sbjct: 49 KITAEEMDGVPHHLI 63
>2ddm_A Pyridoxine kinase; pyridoxal kinase, ribokinase, pyridoxal
5'-phosphate, vitamin B6, phosphorylation, transferase;
2.10A {Escherichia coli} PDB: 2ddo_A* 2ddw_A*
Length = 283
Score = 26.5 bits (59), Expect = 9.5
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 12/47 (25%)
Query: 126 LVAALVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARANATHNHGLD 172
L++ L++G + DA + RA V +V+ T H D
Sbjct: 239 LISGLLKGKALTDA-------VHRAGLRVLEVM-----RYTQQHESD 273
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding,
nucleotide-binding, nucleotidyltransferase, tRNA
processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A
3crr_A
Length = 323
Score = 26.7 bits (60), Expect = 9.5
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 235 KLTKREQRLVPHQLI 249
K ++ PH+LI
Sbjct: 51 KPSRELLARYPHRLI 65
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.131 0.372
Gapped
Lambda K H
0.267 0.0576 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,910,498
Number of extensions: 229102
Number of successful extensions: 520
Number of sequences better than 10.0: 1
Number of HSP's gapped: 510
Number of HSP's successfully gapped: 36
Length of query: 270
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 178
Effective length of database: 4,133,061
Effective search space: 735684858
Effective search space used: 735684858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.7 bits)