RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 040446
(270 letters)
>d2gycq1 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escherichia coli
[TaxId: 562]}
Length = 106
Score = 111 bits (278), Expect = 1e-31
Identities = 43/105 (40%), Positives = 61/105 (58%)
Query: 112 AVLKGIKQSPKKINLVAALVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARANATHNHGL 171
A + + S +K+ LVA L+RG +V AL L T K+AA V +V+ SA ANA HN G
Sbjct: 1 AKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGA 60
Query: 172 DPDRLLVAEAFVGKGFFKKRVSYHSKGRSGIKVRPECRLTVVVRE 216
D D L V + FV +G KR+ +KGR+ ++ +TVVV +
Sbjct: 61 DIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSD 105
>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 127
Score = 107 bits (270), Expect = 3e-30
Identities = 39/108 (36%), Positives = 64/108 (59%)
Query: 109 KVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARANATHN 168
AV K ++ SP+K+ LV ++RG V+DA L+ + A++ V +V++SA+ANA HN
Sbjct: 16 PGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLRFIPRSASEPVAKVLNSAKANALHN 75
Query: 169 HGLDPDRLLVAEAFVGKGFFKKRVSYHSKGRSGIKVRPECRLTVVVRE 216
+ DRL V EA+V G KR+ ++G + I + +T++V E
Sbjct: 76 DEMLEDRLFVKEAYVDAGPTLKRLIPRARGSANIIKKRTSHITIIVAE 123
>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus,
subsp. Thermus thermophilus [TaxId: 271]}
Length = 110
Score = 105 bits (264), Expect = 2e-29
Identities = 39/107 (36%), Positives = 62/107 (57%), Gaps = 3/107 (2%)
Query: 110 VQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARANATHNH 169
+A+ + ++ SP+K+ LV L+RG +E+A L+ T KR A V +V+ SA ANA +NH
Sbjct: 3 AKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNNH 62
Query: 170 GLDPDRLLVAEAFVGKGFFKKRVSYHSKGRSGIKVRPECRLTVVVRE 216
DRL V A+V +G V ++GR+ I + +TV++ E
Sbjct: 63 DALEDRLYVKAAYVDEG---PAVLPRARGRADIIKKRTSHITVILGE 106
>d1vqor1 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 150
Score = 85.4 bits (211), Expect = 2e-21
Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 32/146 (21%)
Query: 102 KVVSKPAK-VQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQVTIKR----------- 149
V + P +A+L+ + S K +A ++G +A+ L+ I+
Sbjct: 5 SVEADPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNS 64
Query: 150 -------------------AAKTVYQVIHSARANATHNHGLDPDRLLVAEAFVGKGFFKK 190
A+K ++ +A NA + G D + + + K ++
Sbjct: 65 GVGHKSKVDGWDAGRYPEKASKAFLDLLENAVGNA-DHQGFDGEAMTIKHVAAHKVGEQQ 123
Query: 191 RVSYHSKGRSGIKVRPECRLTVVVRE 216
+ GR+ P+ + +++ E
Sbjct: 124 GRKPRAMGRASAWNSPQVDVELILEE 149
>d1rm6a2 d.133.1.1 (A:134-769) 4-hydroxybenzoyl-CoA reductase alpha
subunit HrcA, C-terminal domain {Thauera aromatica
[TaxId: 59405]}
Length = 636
Score = 30.0 bits (66), Expect = 0.31
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 153 TVY---QVIHSARANATHNHGLDPDRLLVAEAFVGKGFFKKRVSYH 195
T+ QV + +D R+ V + F+G GF + + H
Sbjct: 75 TLNTTTQVPYYVHLKVAACLQMDSARIRVIKPFLGGGFGARTEALH 120
>d1v97a5 d.133.1.1 (A:695-1332) Xanthine oxidase, C-terminal domain
{Cow (Bos taurus) [TaxId: 9913]}
Length = 638
Score = 28.0 bits (61), Expect = 1.5
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 153 TVY---QVIHSARANATHNHGLDPDRLLVAEAFVGKGFFKK 190
++ Q ++ G+ +R+LV +G GF K
Sbjct: 67 ELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGGK 107
>d1ffvb2 d.133.1.1 (B:147-803) Carbon monoxide (CO) dehydrogenase
molybdoprotein {Hydrogenophaga pseudoflava [TaxId:
47421]}
Length = 657
Score = 27.7 bits (60), Expect = 1.6
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 153 TVY---QVIHSARANATHNHGLDPDRLLVAEAFVGKGFFKKRVSYH 195
T Y Q H R + G+ ++ + +G GF K Y
Sbjct: 85 TTYITSQAPHVVRTVVSMLSGIPESKVRIVSPDIGGGFGNKVGIYP 130
>d1n62b2 d.133.1.1 (B:147-809) Carbon monoxide (CO) dehydrogenase
molybdoprotein {Oligotropha carboxidovorans, formerly
Pseudomonas carboxydovorans [TaxId: 40137]}
Length = 663
Score = 27.7 bits (60), Expect = 1.8
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 153 TVY---QVIHSARANATHNHGLDPDRLLVAEAFVGKGFFKKRVSYH 195
T++ Q H R + GL ++ V +G GF K +Y
Sbjct: 88 TLWGTFQAPHVIRTVVSLISGLPEHKIHVIAPDIGGGFGNKVGAYS 133
>d1jrob2 d.133.1.1 (B:124-777) Xanthine dehydrogenase chain B,
C-terminal domain {Rhodobacter capsulatus [TaxId: 1061]}
Length = 654
Score = 27.6 bits (60), Expect = 2.1
Identities = 18/114 (15%), Positives = 32/114 (28%), Gaps = 11/114 (9%)
Query: 89 PLLAIESGKADDQKVVSKPAKVQA--VLKGIKQSPKKINLVAALVRGMRVEDALLQLQVT 146
+L ++ A D + P V + + E L+ Q
Sbjct: 2 AILTLDQALAADSRFEGGPVIWARGDVETALAGAAHL---AEGCFEIGGQEHFYLEGQAA 58
Query: 147 IKRAAK---TVY---QVIHSARANATHNHGLDPDRLLVAEAFVGKGFFKKRVSY 194
+ A+ ++ Q + H GL + V +G GF K
Sbjct: 59 LALPAEGGVVIHCSSQHPSEIQHKVAHALGLAFHDVRVEMRRMGGGFGGKESQG 112
>g1aym.1 b.121.4.1 (4:,2:) Rhinovirus coat proteins {Human
rhinovirus 16, (HRV-16) [TaxId: 31708]}
Length = 296
Score = 27.1 bits (60), Expect = 2.2
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 178 VAEAFVGKGFFKKRVSYHSKGRSGIKVRPEC 208
+ +A G F + + YH GRSG V +C
Sbjct: 117 LPDALKDMGIFGENMFYHFLGRSGYTVHVQC 147
>d1vlba4 d.133.1.1 (A:311-907) Aldehyde oxidoreductase
{Desulfovibrio gigas [TaxId: 879]}
Length = 597
Score = 27.3 bits (59), Expect = 2.4
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 153 TVY---QVIHSARANATHNHGLDPDRLLVAEAFVGKGFFKK 190
++ +H GL+PD+L++ +G F K
Sbjct: 74 YIHSKSIGVHLHLYMIAPGVGLEPDQLVLVANPMGGTFGYK 114
>d1t3qb2 d.133.1.1 (B:166-786) Quinoline 2-oxidoreductase large
subunit QorL {Pseudomonas putida [TaxId: 303]}
Length = 621
Score = 26.9 bits (58), Expect = 3.0
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 3/41 (7%)
Query: 153 TVY---QVIHSARANATHNHGLDPDRLLVAEAFVGKGFFKK 190
++ Q+ R + + V VG GF +K
Sbjct: 53 ILWTATQMPSFVRTMVAMFCAIPEHLIEVRVPDVGGGFGQK 93
>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial
branched-chain alpha-ketoacid dehydrogenase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 87
Score = 25.1 bits (55), Expect = 3.1
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 74 RKLLANSSDETPVSSPLLAIESGKADDQK 102
+KL N D V PL+ IE+ D +
Sbjct: 59 KKLYYNLDDIAYVGKPLVDIETEALKDLE 87
>d1gzga_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 329
Score = 26.4 bits (58), Expect = 3.8
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 227 RLRVHKF-RKLTKREQRLVPHQLIETTPIWNRRGKSSNRE-PSM 268
R R F R+L RE L LI P++ G + PSM
Sbjct: 11 RNRRDDFSRRLV-RENVLTVDDLI--LPVFVLDGVNQRESIPSM 51
>d1ub0a_ c.72.1.2 (A:) 4-amino-5-hydroxymethyl-2-methylpyrimidine
phosphate kinase (HMP-phosphate kinase, ThiD) {Thermus
thermophilus [TaxId: 274]}
Length = 258
Score = 26.3 bits (57), Expect = 4.1
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 8/45 (17%)
Query: 126 LVAALVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARANATHNHG 170
+ A L +G + +A + A + + + +A + H HG
Sbjct: 216 IAALLAKGRPLAEA-------VAEAKAYLTRALKTAP-SLGHGHG 252
>d2c1ha1 c.1.10.3 (A:10-328) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Prosthecochloris
vibrioformis [TaxId: 1098]}
Length = 319
Score = 26.0 bits (57), Expect = 5.1
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 227 RLRVHKF-RKLTKREQRLVPHQLIETTPIWNRRGKSSNRE-PSM 268
RLR R L +E L + L+ P++ G ++ E SM
Sbjct: 6 RLRRTAALRNLV-QENTLTVNDLVF--PLFVMPGTNAVEEVSSM 46
>d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase
(Pantoate-beta-alanine ligase, PanC) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 286
Score = 25.9 bits (56), Expect = 5.1
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 102 KVVSKPAKVQAVLKGIKQSPKKINLV 127
V S P V V + ++ + +++ LV
Sbjct: 10 NVYSAPGDVADVSRALRLTGRRVMLV 35
>g2mev.1 b.121.4.1 (4:,2:) Mengo encephalomyocarditis virus coat
proteins {Mengovirus [TaxId: 12107]}
Length = 307
Score = 25.6 bits (56), Expect = 6.5
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 185 KGFFKKRVSYHSKGRSGIKVRPEC 208
G F + H ++G +V+ +C
Sbjct: 144 GGVFGATLRRHYLVKTGWRVQVQC 167
>d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 471
Score = 25.9 bits (55), Expect = 6.5
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 201 GIKVRPECRLTV-------VVRELTAEEEAQIARLRVHKFRKLTKR 239
++ R V VV+ L EE + R ++ + ++ R
Sbjct: 398 ALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACR 443
>d1l6sa_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Escherichia coli [TaxId:
562]}
Length = 323
Score = 25.7 bits (56), Expect = 6.6
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 227 RLRVHKF-RKLTKREQRLVPHQLIETTPIWNRRGKSSNRE-PSM 268
RLR R + E L + L+ PI+ + +M
Sbjct: 9 RLRKSPALRAMF-EETTLSLNDLV--LPIFVEEEIDDYKAVEAM 49
>d1vi9a_ c.72.1.5 (A:) Pyridoxamine kinase {Escherichia coli [TaxId:
562]}
Length = 288
Score = 25.5 bits (55), Expect = 7.1
Identities = 8/38 (21%), Positives = 20/38 (52%), Gaps = 7/38 (18%)
Query: 126 LVAALVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARA 163
L+ L++G +++AL + VY+++ + +A
Sbjct: 230 LLVKLLQGATLQEAL-------EHVTAAVYEIMVTTKA 260
>g1tme.1 b.121.4.1 (4:,2:) Theilovirus capsid proteins {Theiler's
murine encephalomyelitis virus, strain da [TaxId:
12124]}
Length = 280
Score = 25.1 bits (55), Expect = 9.6
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 173 PDRLLVAEAFVGKGFFKKRVSYHSKGRSGIKVRPEC 208
P L + G F + H ++G +V+ +C
Sbjct: 99 PHVLAGED----GGVFGATLRRHYLCKTGWRVQVQC 130
>g1d4m.1 b.121.4.1 (4:,2:) Human enterovirus B coat proteins {Human
coxsackievirus A9 [TaxId: 12067]}
Length = 320
Score = 25.2 bits (55), Expect = 9.9
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 180 EAFVGKGFFKKRVSYHSKGRSGIKVRPEC 208
EA G F + + YH GR+G + +C
Sbjct: 143 EALSDMGLFGQNMQYHYLGRAGYTIHVQC 171
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.131 0.372
Gapped
Lambda K H
0.267 0.0612 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 919,571
Number of extensions: 39972
Number of successful extensions: 127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 26
Length of query: 270
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 186
Effective length of database: 1,254,276
Effective search space: 233295336
Effective search space used: 233295336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.1 bits)