BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>040450
QIEREETGAKEKETVTVRQSVALCEGERARLCLVSEKNQNQIIMIRKWWRTKWALGQILR
LRGRGFRSDAALEAISKAGEERVKNLTLYNYPSPSGSLSALFAHLFHFHLNLPCLLLPFS
SVEPLRVEDLCIEGLERVYLLDFLGPKGFADALSRRSSCEVIGFDHRKSVLGQITSDHPD
KVTFYVDLEKSSSTAAYEYFSSKLVDLNSPD

High Scoring Gene Products

Symbol, full name Information P value
AT5G09580 protein from Arabidopsis thaliana 1.0e-36
AT1G53345 protein from Arabidopsis thaliana 1.2e-12

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  040450
        (211 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2144786 - symbol:AT5G09580 "AT5G09580" species...   395  1.0e-36   1
TAIR|locus:505006182 - symbol:AT1G53345 "AT1G53345" speci...   172  1.2e-12   1


>TAIR|locus:2144786 [details] [associations]
            symbol:AT5G09580 "AT5G09580" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002688 EMBL:AL353994 EMBL:DQ492238
            IPI:IPI00547174 PIR:T49940 RefSeq:NP_196520.1 UniGene:At.54787
            ProteinModelPortal:Q9LXC3 EnsemblPlants:AT5G09580.1 GeneID:830817
            KEGG:ath:AT5G09580 TAIR:At5g09580 InParanoid:Q9LXC3 OMA:SFIIRMD
            PhylomeDB:Q9LXC3 ProtClustDB:CLSN2916883 Genevestigator:Q9LXC3
            Uniprot:Q9LXC3
        Length = 393

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 89/181 (49%), Positives = 111/181 (61%)

Query:    37 KNQNQIIMIRKWWRTKWALGQILRLR---GRGFRSDAALEAISKAGEERVKNLTLYNYPS 93
             K+Q  +I  R   R   A+    +L+    R FRSDAALEAI+ A EE+V NL LYNYPS
Sbjct:    23 KSQQSMIFRRFSGRFLTAIPDSCKLKFEAKRSFRSDAALEAIANALEEKVPNLVLYNYPS 82

Query:    94 PSGXXXXXXXXXXXXXXNLPCLLLPFSSVEPLRVEDLCIEGLERVYLLDFLGPKGFADAL 153
              SG               LPCL+LPFSS+ P RVEDLC+EG ER YLLDF+ PK FA   
Sbjct:    83 FSGAFSALFAHLYHYRLRLPCLILPFSSLIPFRVEDLCLEGFERCYLLDFVVPKDFA--- 139

Query:   154 SRRSSCEVIGFDHRKSVL---GQITSDHPDKVTFYVDLEKSSSTAAYEYFSSKLVDLNSP 210
              ++++CE++ FDHR S L   G I  +H  ++  YVD E SSS A Y+YFSSKL D  S 
Sbjct:   140 CQKTACEIVCFDHRNSALKRIGLIKEEHKKRLKIYVDTETSSSKAVYKYFSSKLTDQRSS 199

Query:   211 D 211
             +
Sbjct:   200 E 200


>TAIR|locus:505006182 [details] [associations]
            symbol:AT1G53345 "AT1G53345" species:3702 "Arabidopsis
            thaliana" [GO:0008150 "biological_process" evidence=ND]
            EMBL:CP002684 IPI:IPI00533391 RefSeq:NP_564629.1 UniGene:At.37421
            ProteinModelPortal:F4HRG2 PRIDE:F4HRG2 EnsemblPlants:AT1G53345.1
            GeneID:841770 KEGG:ath:AT1G53345 OMA:HAQACGF Uniprot:F4HRG2
        Length = 325

 Score = 172 (65.6 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 38/125 (30%), Positives = 61/125 (48%)

Query:    84 KNLTLYNYPSPSGXXXXXXXXXXXXXXNLPCLLLPFSSVEPLRVEDLCIEGLERVYLLDF 143
             K   LY+YP   G              ++P L  P +   P+ +  L ++ +  +YL DF
Sbjct:     7 KMAVLYHYPCHDGVFAALAAHLYFSAKSIPSLFFPNTVYSPITINQLPLQDISHLYLFDF 66

Query:   144 LGPKGFADALSRRSSCEVIGFDHRKSVLGQI--TSDHPDKVTFYVDLEKSSSTAAYEYFS 201
              GP GF   +S +    VI  DH K+ +  +   S     VT  +D+E+S +T A++YF+
Sbjct:    67 TGPPGFVHQVSPKVDNVVI-LDHHKTAIDSLGDVSLTCKNVTSVLDIERSGATIAFDYFT 125

Query:   202 SKLVD 206
              KLV+
Sbjct:   126 QKLVE 130


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.135   0.395    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      211       197   0.00082  111 3  11 22  0.49    32
                                                     31  0.44    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  596 (63 KB)
  Total size of DFA:  163 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.24u 0.09s 16.33t   Elapsed:  00:00:00
  Total cpu time:  16.24u 0.09s 16.33t   Elapsed:  00:00:00
  Start:  Mon May 20 19:31:40 2013   End:  Mon May 20 19:31:40 2013

Back to top