BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040450
         (211 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q14493|SLBP_HUMAN Histone RNA hairpin-binding protein OS=Homo sapiens GN=SLBP PE=1
          SV=1
          Length = 270

 Score = 33.1 bits (74), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 24/48 (50%)

Query: 52 KWALGQILRLRGRGFRSDAALEAISKAGEERVKNLTLYNYPSPSGSLS 99
          +W+LG+  R  GR +R + A EA  +  E R ++ T    P P    S
Sbjct: 26 RWSLGRKRRADGRRWRPEDAEEAEHRGAERRPESFTTPEGPKPRSRCS 73


>sp|Q9CAT6|OCT1_ARATH Organic cation/carnitine transporter 1 OS=Arabidopsis thaliana
           GN=OCT1 PE=2 SV=1
          Length = 539

 Score = 31.6 bits (70), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 9   AKEKETVTVRQSVALCEGER--ARLCLVSE--KNQNQIIMIRKWWRTKWALGQILRLRGR 64
            + KE + V + +A   G++  A L LV    +  +Q     K+W+TKWA+ +I+ +   
Sbjct: 284 GRNKEAMVVLKKLARLNGKQLPADLSLVDPIPERDDQTSSSEKFWKTKWAVKRIIMVMMA 343

Query: 65  GFRSDAALEAISKAGEERVKNLTL 88
           GF S      I    E    NL L
Sbjct: 344 GFGSGFVYYGIQLNAENLNFNLYL 367


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.135    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,309,138
Number of Sequences: 539616
Number of extensions: 2960531
Number of successful extensions: 6846
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 6845
Number of HSP's gapped (non-prelim): 8
length of query: 211
length of database: 191,569,459
effective HSP length: 112
effective length of query: 99
effective length of database: 131,132,467
effective search space: 12982114233
effective search space used: 12982114233
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)