Query 040450
Match_columns 211
No_of_seqs 56 out of 58
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 08:35:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040450.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040450hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01368 DHH: DHH family; Int 98.6 3.2E-08 7E-13 75.3 3.6 118 82-203 5-128 (145)
2 COG2404 Predicted phosphohydro 97.9 1.2E-05 2.6E-10 74.6 3.7 114 88-202 4-126 (339)
3 PRK05427 putative manganese-de 97.8 4.2E-05 9.2E-10 68.2 7.0 113 84-202 3-128 (308)
4 TIGR00644 recJ single-stranded 97.8 9.7E-05 2.1E-09 70.5 9.6 125 69-201 41-182 (539)
5 COG0608 RecJ Single-stranded D 97.3 0.0011 2.3E-08 62.6 8.0 106 69-176 23-130 (491)
6 PRK11070 ssDNA exonuclease Rec 97.0 0.0053 1.2E-07 60.2 10.1 125 68-199 55-196 (575)
7 COG0618 Exopolyphosphatase-rel 96.7 0.0095 2.1E-07 53.8 8.7 115 84-203 18-147 (332)
8 PRK14538 putative bifunctional 94.3 0.23 5.1E-06 51.1 9.0 113 83-201 368-508 (838)
9 PLN02723 3-mercaptopyruvate su 86.4 1.7 3.7E-05 39.1 5.7 55 64-121 249-304 (320)
10 COG2897 SseA Rhodanese-related 81.1 3.5 7.5E-05 37.7 5.4 56 62-119 68-124 (285)
11 COG0505 CarA Carbamoylphosphat 78.7 17 0.00037 34.9 9.4 97 76-175 119-218 (368)
12 cd01449 TST_Repeat_2 Thiosulfa 73.6 12 0.00026 27.5 5.7 41 65-108 59-100 (118)
13 PRK11493 sseA 3-mercaptopyruva 73.6 9.2 0.0002 33.5 5.8 66 65-134 212-279 (281)
14 cd01445 TST_Repeats Thiosulfat 70.0 13 0.00028 29.6 5.4 42 66-110 77-122 (138)
15 PRK09629 bifunctional thiosulf 64.6 15 0.00032 36.6 5.7 53 64-119 203-256 (610)
16 cd01448 TST_Repeat_1 Thiosulfa 61.8 25 0.00055 26.1 5.3 43 65-110 60-104 (122)
17 COG1737 RpiR Transcriptional r 61.5 40 0.00087 29.8 7.4 111 85-200 132-249 (281)
18 COG3887 Predicted signaling pr 60.6 6.6 0.00014 40.1 2.5 89 83-172 338-450 (655)
19 PRK14869 putative manganese-de 60.4 8.5 0.00018 36.7 3.1 73 125-203 294-366 (546)
20 cd01519 RHOD_HSP67B2 Member of 59.7 19 0.00041 25.9 4.2 26 81-109 64-89 (106)
21 cd01528 RHOD_2 Member of the R 59.5 17 0.00037 26.3 4.0 25 83-110 58-82 (101)
22 cd01444 GlpE_ST GlpE sulfurtra 57.8 17 0.00037 25.6 3.7 27 81-110 54-80 (96)
23 COG3564 Uncharacterized protei 55.3 11 0.00024 30.7 2.6 32 64-97 6-39 (116)
24 smart00450 RHOD Rhodanese Homo 55.0 36 0.00077 23.1 4.8 29 79-110 52-80 (100)
25 cd01530 Cdc25 Cdc25 phosphatas 54.8 20 0.00044 27.7 3.9 26 80-108 65-91 (121)
26 KOG4129 Exopolyphosphatases an 54.8 13 0.00029 35.8 3.4 63 136-207 104-168 (377)
27 cd01447 Polysulfide_ST Polysul 52.6 17 0.00036 25.9 2.9 25 81-108 59-83 (103)
28 COG1227 PPX1 Inorganic pyropho 48.6 24 0.00051 33.2 3.9 65 136-207 69-134 (311)
29 PF00501 AMP-binding: AMP-bind 47.7 96 0.0021 26.9 7.3 58 79-164 42-99 (417)
30 PF10960 DUF2762: Protein of u 46.6 12 0.00027 27.9 1.5 15 94-108 11-25 (71)
31 TIGR03865 PQQ_CXXCW PQQ-depend 44.1 50 0.0011 27.0 4.8 34 81-117 114-148 (162)
32 cd01533 4RHOD_Repeat_2 Member 42.9 69 0.0015 23.5 5.0 26 81-109 64-89 (109)
33 cd05008 SIS_GlmS_GlmD_1 SIS (S 42.4 1E+02 0.0022 22.8 5.9 75 99-176 14-92 (126)
34 CHL00197 carA carbamoyl-phosph 41.7 38 0.00083 32.2 4.2 36 135-171 192-227 (382)
35 PLN02246 4-coumarate--CoA liga 40.8 1.2E+02 0.0026 27.9 7.1 27 79-105 71-97 (537)
36 TIGR01838 PHA_synth_I poly(R)- 40.4 81 0.0018 31.2 6.4 58 84-168 172-230 (532)
37 COG2241 CobL Precorrin-6B meth 40.1 1.8E+02 0.0039 25.8 7.9 49 68-121 54-104 (210)
38 PF08087 Toxin_18: Conotoxin O 38.8 11 0.00023 24.6 0.1 19 86-104 9-27 (31)
39 PRK07470 acyl-CoA synthetase; 38.6 3E+02 0.0065 25.1 9.3 60 80-167 54-113 (528)
40 cd01525 RHOD_Kc Member of the 37.6 46 0.00099 23.9 3.3 24 83-109 65-88 (105)
41 cd01527 RHOD_YgaP Member of th 37.3 57 0.0012 23.3 3.7 26 81-109 52-77 (99)
42 PF11017 DUF2855: Protein of u 37.3 47 0.001 31.0 4.1 82 85-170 138-238 (314)
43 PF03537 Glyco_hydro_114: Glyc 37.1 44 0.00095 24.4 3.1 29 134-163 25-54 (74)
44 PRK11493 sseA 3-mercaptopyruva 36.2 1.8E+02 0.0038 25.5 7.3 47 68-117 71-119 (281)
45 cd01518 RHOD_YceA Member of th 35.9 66 0.0014 23.2 3.9 24 82-108 60-83 (101)
46 cd01529 4RHOD_Repeats Member o 34.2 81 0.0018 22.5 4.1 22 82-106 55-76 (96)
47 PRK10287 thiosulfate:cyanide s 34.1 1.1E+02 0.0024 23.4 5.1 27 81-110 58-84 (104)
48 TIGR02262 benz_CoA_lig benzoat 33.9 1.9E+02 0.0042 26.1 7.3 59 80-166 52-110 (508)
49 cd01532 4RHOD_Repeat_1 Member 33.6 58 0.0013 23.4 3.3 25 83-110 50-76 (92)
50 TIGR01836 PHA_synth_III_C poly 31.9 1.3E+02 0.0029 26.5 5.9 25 84-119 46-70 (350)
51 PRK06018 putative acyl-CoA syn 31.2 1.7E+02 0.0036 27.0 6.5 26 80-105 61-86 (542)
52 cd01524 RHOD_Pyr_redox Member 30.5 1E+02 0.0022 21.9 4.0 22 83-107 51-72 (90)
53 PRK11557 putative DNA-binding 29.9 2.2E+02 0.0048 24.4 6.7 79 95-176 139-221 (278)
54 PLN02723 3-mercaptopyruvate su 29.0 1.1E+02 0.0023 27.7 4.9 52 64-118 83-136 (320)
55 PF03478 DUF295: Protein of un 28.5 49 0.0011 22.4 2.0 34 110-143 7-40 (54)
56 KOG2923 Uncharacterized conser 28.4 29 0.00063 26.2 0.9 11 87-97 19-29 (67)
57 cd01535 4RHOD_Repeat_4 Member 28.2 99 0.0021 24.8 4.1 32 84-118 50-81 (145)
58 PRK05857 acyl-CoA synthetase; 27.0 2.7E+02 0.0059 25.7 7.2 26 80-105 63-88 (540)
59 TIGR03127 RuMP_HxlB 6-phospho 26.1 3.4E+02 0.0074 21.7 9.3 75 94-176 40-118 (179)
60 COG4017 Uncharacterized protei 25.9 2E+02 0.0044 26.4 6.0 63 130-193 40-111 (254)
61 PRK09629 bifunctional thiosulf 25.5 1.5E+02 0.0034 29.7 5.6 51 65-118 62-114 (610)
62 PRK07445 O-succinylbenzoic aci 25.4 3.1E+02 0.0067 25.1 7.2 23 83-105 45-67 (452)
63 COG1856 Uncharacterized homolo 24.4 44 0.00096 31.0 1.5 63 133-205 108-175 (275)
64 PRK07867 acyl-CoA synthetase; 23.9 3.5E+02 0.0076 25.1 7.3 58 83-168 54-111 (529)
65 cd01523 RHOD_Lact_B Member of 23.7 1.2E+02 0.0026 21.7 3.5 25 82-109 60-84 (100)
66 PRK09088 acyl-CoA synthetase; 23.7 3.7E+02 0.0081 24.1 7.3 57 82-166 46-102 (488)
67 COG0381 WecB UDP-N-acetylgluco 23.6 93 0.002 30.1 3.6 36 69-104 78-113 (383)
68 COG2130 Putative NADP-dependen 23.5 2.9E+02 0.0063 26.6 6.8 55 134-188 150-226 (340)
69 TIGR02981 phageshock_pspE phag 22.7 2.4E+02 0.0052 21.4 5.1 26 81-109 56-81 (101)
70 cd01522 RHOD_1 Member of the R 22.4 2E+02 0.0044 21.7 4.6 24 83-109 64-87 (117)
71 TIGR01733 AA-adenyl-dom amino 22.3 4.6E+02 0.0099 22.5 7.3 58 82-167 24-81 (408)
72 PRK08279 long-chain-acyl-CoA s 22.0 3.8E+02 0.0082 25.2 7.2 32 135-166 111-142 (600)
73 PF04122 CW_binding_2: Putativ 21.9 2.1E+02 0.0044 20.8 4.4 68 69-141 10-79 (92)
74 TIGR00236 wecB UDP-N-acetylglu 21.5 1.1E+02 0.0023 26.9 3.3 36 70-105 73-108 (365)
75 PRK12564 carbamoyl phosphate s 21.1 1.8E+02 0.004 27.3 5.0 35 135-170 177-211 (360)
76 PRK06187 long-chain-fatty-acid 21.0 4.6E+02 0.0099 23.3 7.2 26 80-105 53-78 (521)
77 PRK04319 acetyl-CoA synthetase 21.0 3.5E+02 0.0076 25.2 6.7 25 81-105 96-120 (570)
78 TIGR01923 menE O-succinylbenzo 20.7 5E+02 0.011 22.7 7.3 57 82-166 23-79 (436)
79 PF07925 RdRP_5: Reovirus RNA- 20.3 39 0.00085 36.9 0.4 26 177-202 578-603 (1271)
80 PRK06145 acyl-CoA synthetase; 20.3 3.9E+02 0.0085 24.0 6.7 59 82-168 51-109 (497)
81 cd00158 RHOD Rhodanese Homolog 20.0 2.3E+02 0.0049 19.0 4.1 28 80-110 47-74 (89)
No 1
>PF01368 DHH: DHH family; InterPro: IPR001667 This is a domain of predicted phosphoesterases that includes Drosophila prune protein and bacterial RecJ exonuclease []. The RecJ protein of Escherichia coli plays an important role in a number of DNA repair and recombination pathways. RecJ catalyzes processive degradation of single-stranded DNA in a 5'-to-3' direction. Sequences highly related to those encoding RecJ can be found in many of the eubacterial genomes sequenced to date [].; GO: 0016787 hydrolase activity, 0030145 manganese ion binding; PDB: 3DEV_A 2HAW_A 1WPN_A 1WPM_B 2IW4_B 1K23_D 2EB0_A 1I74_A 2ZXR_A 2ZXO_A ....
Probab=98.61 E-value=3.2e-08 Score=75.35 Aligned_cols=118 Identities=21% Similarity=0.192 Sum_probs=75.2
Q ss_pred CCccEEEEccCC-CCcHHHHHHHHHhhccCCCceeeeCCcccCCcccc--ccccCC--cceEEEEecCCChhHHHHHhhh
Q 040450 82 RVKNLTLYNYPS-PSGSLSALFAHLFHFHLNLPCLLLPFSSVEPLRVE--DLCIEG--LERVYLLDFLGPKGFADALSRR 156 (211)
Q Consensus 82 ~~p~lVLYHypC-~DGf~AAlAAhL~~~~~~~p~~flP~s~~~P~~ve--Dlp~~~--~~~VYILDFSfp~~fl~~Ls~k 156 (211)
..+.+++.|.+| +||.+||++...++.+.+....+++.....+.... .+.... ...++++|+..+......+...
T Consensus 5 ~~~i~i~~H~~~D~Dgl~Sa~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~vD~~~~~~~~~~~~~~ 84 (145)
T PF01368_consen 5 AERILIVGHINPDADGLGSAIALAKILKRLGKEVTVIPIPEGPPHEYFLFVLKYFEMNEDLIILVDCGSPDRDGEKLEEL 84 (145)
T ss_dssp TSEEEEEEBSS-SHHHHHHHHHHHHHHHHTTCTEEEEEECSSTCGHHHHHHHHHTTHHHSEEEEES-SSGGGSGTTGGGT
T ss_pred CCEEEEEccCCCCchHHHHHHHHHHHHHHcCCCceEEecCCCCcchhhhhhhhhhcccceEEEEecCCccccchHHHHhc
Confidence 357899999988 99999999999998887766555555444332110 011111 2799999998888777666653
Q ss_pred CCCcEEEeecchhhHhhhcCCCCCCeEEEEecCC-CcchhhHHhhhhh
Q 040450 157 SSCEVIGFDHRKSVLGQITSDHPDKVTFYVDLEK-SSSTAAYEYFSSK 203 (211)
Q Consensus 157 a~~sVIvLDHHKSA~e~L~~~~~~nl~i~FDMeK-SGA~lAwdYF~~k 203 (211)
...+||++|||++..... .+..+. .+|..- |-+.+++++|.+.
T Consensus 85 ~~~~viiiDHH~~~~~~~---~~~~~~-~~~~~~~s~~~lv~~~~~~~ 128 (145)
T PF01368_consen 85 KGIKVIIIDHHQPGEEDI---NPNDVN-YIDESAGSTSTLVAEMLKEL 128 (145)
T ss_dssp SCSEEEEEESSSSBSS------SSCEE-EEETSSSHHHHHHHHHHHHT
T ss_pred CCCCEEEeCCCCCCcccC---CCCCCC-CEeCcHHHHHHHHHHHHHHc
Confidence 334899999998766643 122222 455443 3366888888743
No 2
>COG2404 Predicted phosphohydrolase (DHH superfamily) [General function prediction only]
Probab=97.85 E-value=1.2e-05 Score=74.64 Aligned_cols=114 Identities=18% Similarity=0.190 Sum_probs=74.3
Q ss_pred EEccCCCCcHHHHHHHHHhhccCCCceeeeCCcccC-CccccccccCCc-ceEEEEecCCChh----HHHHHhh---hCC
Q 040450 88 LYNYPSPSGSLSALFAHLFHFHLNLPCLLLPFSSVE-PLRVEDLCIEGL-ERVYLLDFLGPKG----FADALSR---RSS 158 (211)
Q Consensus 88 LYHypC~DGf~AAlAAhL~~~~~~~p~~flP~s~~~-P~~veDlp~~~~-~~VYILDFSfp~~----fl~~Ls~---ka~ 158 (211)
||=-+=.||.++|.++-.+++...-+.-+++..+.. ..-.+++-..+. ..+.|-|--+-.+ +...|.. +.
T Consensus 4 i~sH~DlDG~acaaV~k~~~gk~vyn~n~~~~~~~~i~~~l~~~~~~~~~~~i~i~DL~~n~d~~e~~~~~l~~~~~~~- 82 (339)
T COG2404 4 IYSHNDLDGYACAAVVKRFFGKNVYNANFGREVSARINSILESAEESGIGDAILISDLDVNLDRFEELVEKLKEATNKG- 82 (339)
T ss_pred EEecCCcchHHHHHHHHHHhhhcccchhhhccchHHHHHHHHHHHhhcccceEEEeecccCcchhHHHHHHHHHHhhcC-
Confidence 433356899999999999887533233333211110 001122222333 4777777765443 3344443 25
Q ss_pred CcEEEeecchhhHhhhcCCCCCCeEEEEecCCCcchhhHHhhhh
Q 040450 159 CEVIGFDHRKSVLGQITSDHPDKVTFYVDLEKSSSTAAYEYFSS 202 (211)
Q Consensus 159 ~sVIvLDHHKSA~e~L~~~~~~nl~i~FDMeKSGA~lAwdYF~~ 202 (211)
.+|.-||||||+.+.+..-+..-+.++.|-.||.|.++++||.+
T Consensus 83 ~kv~wiDHH~t~~e~~~e~~~~~v~~~~D~~rcaa~vvy~~l~~ 126 (339)
T COG2404 83 TKVKWIDHHKTANETKEEVREAGVSVYVDDSRCAAGVVYEYLKP 126 (339)
T ss_pred CceEEeccccccchhHHHhhhcCcEEEECCcchhhhhhhheecc
Confidence 48999999999999766645566889999999999999999987
No 3
>PRK05427 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.85 E-value=4.2e-05 Score=68.23 Aligned_cols=113 Identities=18% Similarity=0.212 Sum_probs=66.3
Q ss_pred ccEEEEccC-CCCcHHHHHHHHHhhccCCCceeeeCCcccCC--------cc--ccccc-cCCcc-eEEEEecCCChhHH
Q 040450 84 KNLTLYNYP-SPSGSLSALFAHLFHFHLNLPCLLLPFSSVEP--------LR--VEDLC-IEGLE-RVYLLDFLGPKGFA 150 (211)
Q Consensus 84 p~lVLYHyp-C~DGf~AAlAAhL~~~~~~~p~~flP~s~~~P--------~~--veDlp-~~~~~-~VYILDFSfp~~fl 150 (211)
..+|+-|-+ -+|..++|++...+.+..+.++..+......| +. .+.+. ..... .|++||++-+....
T Consensus 3 ~i~V~gH~nPD~DaigSalala~~l~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~vilVD~~~~~r~~ 82 (308)
T PRK05427 3 KILVFGHKNPDTDSICSAIAYAYLKKALGLDAEAVRLGEPNPETAFVLDYFGVEAPELITSVAGEVQVILVDHNEFQQSP 82 (308)
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHcCCCChhHHhhcccCCeEEEEeCCCcccCc
Confidence 357889985 89999999998888766555544321111111 00 11111 11223 89999998776554
Q ss_pred HHHhhhCCCcEEEeecchhhHhhhcCCCCCCeEEEEecCCCcchhhHHhhhh
Q 040450 151 DALSRRSSCEVIGFDHRKSVLGQITSDHPDKVTFYVDLEKSSSTAAYEYFSS 202 (211)
Q Consensus 151 ~~Ls~ka~~sVIvLDHHKSA~e~L~~~~~~nl~i~FDMeKSGA~lAwdYF~~ 202 (211)
..+. ++. -+++||||++ ..+.... .+.+.++---|-|+|.|++|..
T Consensus 83 ~~~~-~~~-~~~iIDHH~~--~~~~~~~--p~~~~~~~~gSt~tiv~~~~~~ 128 (308)
T PRK05427 83 DDID-EAT-VVGVVDHHRL--GNFETSN--PLYYRIEPVGCTATILYKMFKE 128 (308)
T ss_pred chhc-ccC-EEEEECCCcC--CCCCCCC--ceEEEEeeeccHHHHHHHHHHh
Confidence 4443 453 6899999998 3333222 2333333333444599999864
No 4
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=97.84 E-value=9.7e-05 Score=70.53 Aligned_cols=125 Identities=19% Similarity=0.208 Sum_probs=78.0
Q ss_pred hhHHHHHHHhcccCCccEEEEccCCCCcHHHHHHHHHhhccCCCcee-eeCCcccC-----CccccccccCCcceEEEEe
Q 040450 69 DAALEAISKAGEERVKNLTLYNYPSPSGSLSALFAHLFHFHLNLPCL-LLPFSSVE-----PLRVEDLCIEGLERVYLLD 142 (211)
Q Consensus 69 ~aaleai~~~~~~~~p~lVLYHypC~DGf~AAlAAhL~~~~~~~p~~-flP~s~~~-----P~~veDlp~~~~~~VYILD 142 (211)
+.|++.|..+-.+..+.+++-|| =+||.+|+++.+.+++..+..+. ++|....+ +-.++++...+..-+++||
T Consensus 41 ~~a~~~i~~~i~~~~~I~I~gh~-D~DGi~S~~~L~~~L~~~g~~v~~~ip~r~~~~yg~~~~~i~~~~~~~~~LiI~vD 119 (539)
T TIGR00644 41 EKAVERIIEAIENNEKILIFGDY-DVDGITSTAILVEFLKDLGVNVDYYIPNRITEGYGLSPEALREAIENGVSLIITVD 119 (539)
T ss_pred HHHHHHHHHHHhcCCeEEEEEcc-CCCcHHHHHHHHHHHHHCCCceEEEeCCCCcccCCCCHHHHHHHHhcCCCEEEEeC
Confidence 45666676665555566666688 67899999999999998877654 34532211 1112333333446788899
Q ss_pred cCCChhHHHHHhh-hCCCcEEEeecchhhHhhhcCCCCCCeEEEEecCC----------CcchhhHHhhh
Q 040450 143 FLGPKGFADALSR-RSSCEVIGFDHRKSVLGQITSDHPDKVTFYVDLEK----------SSSTAAYEYFS 201 (211)
Q Consensus 143 FSfp~~fl~~Ls~-ka~~sVIvLDHHKSA~e~L~~~~~~nl~i~FDMeK----------SGA~lAwdYF~ 201 (211)
..-..-...+.++ .. ..||++|||.+.-. + |+ ...++|-.+ |||.+||.+..
T Consensus 120 ~G~~~~~~~~~~~~~g-~~vIviDHH~~~~~-~----~~-~~~~vnP~~~~~~~p~~~l~gagva~~l~~ 182 (539)
T TIGR00644 120 NGISAHEEIDYAKELG-IDVIVTDHHEPPED-L----PE-AAAIVNPNRPDCDYPNKELAGAGVAFKLCT 182 (539)
T ss_pred CCcccHHHHHHHHhcC-CCEEEECCCCCCCC-C----CC-ccEEECCCCCCCCCCCcchhHHHHHHHHHH
Confidence 9888654444444 35 59999999987421 2 21 123444333 66899997655
No 5
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=97.26 E-value=0.0011 Score=62.57 Aligned_cols=106 Identities=20% Similarity=0.110 Sum_probs=68.2
Q ss_pred hhHHHHHHHhcccCCccEEEEccCCCCcHHHHHHHHHhhccCCCceee-eCCcccCCc-cccccccCCcceEEEEecCCC
Q 040450 69 DAALEAISKAGEERVKNLTLYNYPSPSGSLSALFAHLFHFHLNLPCLL-LPFSSVEPL-RVEDLCIEGLERVYLLDFLGP 146 (211)
Q Consensus 69 ~aaleai~~~~~~~~p~lVLYHypC~DGf~AAlAAhL~~~~~~~p~~f-lP~s~~~P~-~veDlp~~~~~~VYILDFSfp 146 (211)
+.|.+-|..+-..... +.||+..=.||..|+-....++.+.+..+.+ +|+.-.+.+ .++.+..++..-++.+|.--+
T Consensus 23 ~~a~~~i~~ai~~~~~-I~I~~d~DaDGitS~ail~~~L~~~g~~~~~~ip~~~~~~~g~~~~~~~~~~~liItvD~G~~ 101 (491)
T COG0608 23 EKAAARIAEAIEKGEK-ILIYGDYDADGITSAAILAKALRRLGADVDYYIPNRFEEGYGAIRKLKEEGADLIITVDNGSG 101 (491)
T ss_pred HHHHHHHHHHHHcCCE-EEEEEecCcccHHHHHHHHHHHHHcCCceEEEeCCCccccchHHHHHHhcCCCEEEEECCCcc
Confidence 4455555555444444 4555555569999999999999988876444 444333222 122455677789999998665
Q ss_pred hhHHHHHhhhCCCcEEEeecchhhHhhhcC
Q 040450 147 KGFADALSRRSSCEVIGFDHRKSVLGQITS 176 (211)
Q Consensus 147 ~~fl~~Ls~ka~~sVIvLDHHKSA~e~L~~ 176 (211)
.--....++....+|||+||| ..-+.++.
T Consensus 102 ~~~~i~~~~~~g~~vIVtDHH-~~~~~~p~ 130 (491)
T COG0608 102 SLEEIARAKELGIDVIVTDHH-PPGEELPD 130 (491)
T ss_pred cHHHHHHHHhCCCcEEEECCC-CCCCCCCC
Confidence 544433333334699999999 88887765
No 6
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=96.98 E-value=0.0053 Score=60.15 Aligned_cols=125 Identities=15% Similarity=0.111 Sum_probs=79.3
Q ss_pred chhHHHHHHHhcccCCccEEEEccCCCCcHHHHHHHHHhhccCCCc--eeeeCCcc--c---CCccccccccCCcceEEE
Q 040450 68 SDAALEAISKAGEERVKNLTLYNYPSPSGSLSALFAHLFHFHLNLP--CLLLPFSS--V---EPLRVEDLCIEGLERVYL 140 (211)
Q Consensus 68 s~aaleai~~~~~~~~p~lVLYHypC~DGf~AAlAAhL~~~~~~~p--~~flP~s~--~---~P~~veDlp~~~~~~VYI 140 (211)
-+.|++-|..+-.+..+.+++-||.| ||..|+...+.++++.+.+ ..++|.-. | ++-.++++...+.+-++.
T Consensus 55 m~~a~~ri~~ai~~~e~I~I~gDyD~-DGitstail~~~L~~~g~~~~~~~IP~R~~eGYGl~~~~i~~~~~~~~~LiIt 133 (575)
T PRK11070 55 IEKAVELLYNALREGTRIIVVGDFDA-DGATSTALSVLALRSLGCSNVDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVT 133 (575)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecCc-cHHHHHHHHHHHHHHcCCCceEEEeCCCCcCCCCCCHHHHHHHHhcCCCEEEE
Confidence 35566666666555555555556665 9999999999999888763 46788532 2 334455555555578888
Q ss_pred EecCCChhHHHHHhhhCCCcEEEeecchhhHhhhcCCCCCCeEEEEe----------cCCCcchhhHHh
Q 040450 141 LDFLGPKGFADALSRRSSCEVIGFDHRKSVLGQITSDHPDKVTFYVD----------LEKSSSTAAYEY 199 (211)
Q Consensus 141 LDFSfp~~fl~~Ls~ka~~sVIvLDHHKSA~e~L~~~~~~nl~i~FD----------MeKSGA~lAwdY 199 (211)
+|---..--.-+.++.....|||.|||.-. +.++. -.+++| -+=|||.+||-.
T Consensus 134 vD~Gi~~~e~i~~a~~~gidvIVtDHH~~~-~~~P~-----a~a~iNP~~~~~~yp~~~L~g~Gvaf~l 196 (575)
T PRK11070 134 VDNGISSHAGVAHAHALGIPVLVTDHHLPG-ETLPA-----ADAIINPNLRDCNFPSKSLAGVGVAFYL 196 (575)
T ss_pred EcCCcCCHHHHHHHHHCCCCEEEECCCCCC-CCCCC-----CeEEECCCCcCCCCCCCcchHHHHHHHH
Confidence 998776544444455544699999999643 23332 112232 235688999954
No 7
>COG0618 Exopolyphosphatase-related proteins [General function prediction only]
Probab=96.69 E-value=0.0095 Score=53.76 Aligned_cols=115 Identities=20% Similarity=0.141 Sum_probs=70.6
Q ss_pred ccEEEEcc-CCCCcHHHHHHHHHhhccCCCceeeeCCc---c----------cCCcc-ccccccCCcceEEEEecCCChh
Q 040450 84 KNLTLYNY-PSPSGSLSALFAHLFHFHLNLPCLLLPFS---S----------VEPLR-VEDLCIEGLERVYLLDFLGPKG 148 (211)
Q Consensus 84 p~lVLYHy-pC~DGf~AAlAAhL~~~~~~~p~~flP~s---~----------~~P~~-veDlp~~~~~~VYILDFSfp~~ 148 (211)
+.+++=|- |=||=.+||++.-.+.+.....+.++..- + +.++. .++-+......++|||=+.++.
T Consensus 18 ~i~i~~H~nPD~DalgSa~aL~~ll~~~~~~~~v~~~G~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~iivDt~~~~r 97 (332)
T COG0618 18 KILILTHENPDPDALGSALALAELLKDLGKNKEVLYVGPITHPENRAFLNLLGDELERIEDDPLDDYDLVIIVDTANLPR 97 (332)
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHhCCCceEEEecccCCcchHhhhhhcccccccccCCCcccCCEEEEECCCCCCC
Confidence 44555555 79999999999988888766433333322 1 12222 1122345568999999998666
Q ss_pred HHHHHhhhCCCcEEEeecchhhHhhhcCCCCCCeEEEEecCCCcchhhHHhhhhh
Q 040450 149 FADALSRRSSCEVIGFDHRKSVLGQITSDHPDKVTFYVDLEKSSSTAAYEYFSSK 203 (211)
Q Consensus 149 fl~~Ls~ka~~sVIvLDHHKSA~e~L~~~~~~nl~i~FDMeKSGA~lAwdYF~~k 203 (211)
.-.+........+|++|||-. .......+..+--+--|-|+|.|+|+..-
T Consensus 98 i~~~~~~~~~~~~ivIDHH~~-----~~~~~~~~~~i~~~~~ataeii~~~~~~~ 147 (332)
T COG0618 98 IGDQELLLDSKKVIVIDHHPG-----NNDIYGDFVWIDPSAGATAEIIAELLKEA 147 (332)
T ss_pred cccccccccCCceEEEeCCCC-----CCCCCCceEEeCCCCchHHHHHHHHHHHc
Confidence 554443322138999999997 22223344444344445678999999753
No 8
>PRK14538 putative bifunctional signaling protein/50S ribosomal protein L9; Provisional
Probab=94.27 E-value=0.23 Score=51.06 Aligned_cols=113 Identities=14% Similarity=0.124 Sum_probs=65.3
Q ss_pred CccEEEEcc-CCCCcHHHHHHHHHhhccCC--CceeeeCCc-c----cCC----------------ccccccc--cCCcc
Q 040450 83 VKNLTLYNY-PSPSGSLSALFAHLFHFHLN--LPCLLLPFS-S----VEP----------------LRVEDLC--IEGLE 136 (211)
Q Consensus 83 ~p~lVLYHy-pC~DGf~AAlAAhL~~~~~~--~p~~flP~s-~----~~P----------------~~veDlp--~~~~~ 136 (211)
...++.=|- |=+|++|||++.+.+.+... .++.++.+. . ..+ .+.++.. ..+..
T Consensus 368 d~ViI~gH~nPD~DAlGSalaL~~~lk~l~~~k~~~iv~~~~~~~~~i~~~~~~l~~~~~~~~~~~i~~~~a~~~~~~~~ 447 (838)
T PRK14538 368 PHCFIMGHNHTDLDSLGSMIAFYKIALTIHPDNNNYIILDEEKLDKSLTPVYHQLIKQEHKVTLNIITTQQASKMIKKND 447 (838)
T ss_pred CeEEEEecCCCCchHHHHHHHHHHHHHHhCCCCeEEEEEcCCCcchhHHHHHhhhhcccchhhhcccCHhhhhhccccCC
Confidence 355666676 68999999999887654422 334433211 0 000 0111111 12346
Q ss_pred eEEEEecCCChhHH-HHHhhhCCCcEEEeecchhhHhhhcCCCCCCeEEEEecCCCcc-hhhHHhhh
Q 040450 137 RVYLLDFLGPKGFA-DALSRRSSCEVIGFDHRKSVLGQITSDHPDKVTFYVDLEKSSS-TAAYEYFS 201 (211)
Q Consensus 137 ~VYILDFSfp~~fl-~~Ls~ka~~sVIvLDHHKSA~e~L~~~~~~nl~i~FDMeKSGA-~lAwdYF~ 201 (211)
-+.+||-+-|.-.- .++-.++. .+|+||||.+.-+.+. .....+|-.-|++ .|.||++.
T Consensus 448 llIvVDts~~~Ri~~~~l~~~~~-~iIVIDHHr~~~~~i~-----~~l~yIep~ASST~ELV~Ell~ 508 (838)
T PRK14538 448 LIAVLDTQTKDIVNSPELLSLTN-NIIVIDHHRATEEIIP-----SIFSYVDSSASSTVELLVELMG 508 (838)
T ss_pred EEEEecCCChHhcCChhhhhcCC-CEEEEeCCCCCCCCCC-----ccEEEEEcCcCcHHHHHHHHHH
Confidence 67889988776221 13445664 8999999998643221 2344567666665 89998874
No 9
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=86.42 E-value=1.7 Score=39.12 Aligned_cols=55 Identities=11% Similarity=-0.004 Sum_probs=38.2
Q ss_pred ccccchhHHHHH-HHhcccCCccEEEEccCCCCcHHHHHHHHHhhccCCCceeeeCCcc
Q 040450 64 RGFRSDAALEAI-SKAGEERVKNLTLYNYPSPSGSLSALFAHLFHFHLNLPCLLLPFSS 121 (211)
Q Consensus 64 r~~rs~aaleai-~~~~~~~~p~lVLYHypC~DGf~AAlAAhL~~~~~~~p~~flP~s~ 121 (211)
..|+|.+-|+++ .+...+...++++| |..|..|+.+++....-+...+.++..+-
T Consensus 249 ~~~~~~~el~~~~~~~gi~~~~~iv~y---C~sG~~A~~~~~~L~~~G~~~v~~YdGs~ 304 (320)
T PLN02723 249 QTLLPAEELKKRFEQEGISLDSPIVAS---CGTGVTACILALGLHRLGKTDVPVYDGSW 304 (320)
T ss_pred CCCCCHHHHHHHHHhcCCCCCCCEEEE---CCcHHHHHHHHHHHHHcCCCCeeEeCCCH
Confidence 358999999887 33444555579999 99999999888766554433466665443
No 10
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=81.08 E-value=3.5 Score=37.72 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=47.6
Q ss_pred ccccccchhHHHHH-HHhcccCCccEEEEccCCCCcHHHHHHHHHhhccCCCceeeeCC
Q 040450 62 RGRGFRSDAALEAI-SKAGEERVKNLTLYNYPSPSGSLSALFAHLFHFHLNLPCLLLPF 119 (211)
Q Consensus 62 ~~r~~rs~aaleai-~~~~~~~~p~lVLYHypC~DGf~AAlAAhL~~~~~~~p~~flP~ 119 (211)
+++-|-+...++.+ .+...+...++|+|=. ..|++||.++|+++--+...+.+|-.
T Consensus 68 ~~~~lp~~e~fa~~~~~~GI~~d~tVVvYdd--~~~~~A~ra~W~l~~~Gh~~V~iLdG 124 (285)
T COG2897 68 LPHMLPSPEQFAKLLGELGIRNDDTVVVYDD--GGGFFAARAWWLLRYLGHENVRILDG 124 (285)
T ss_pred CCCCCCCHHHHHHHHHHcCCCCCCEEEEECC--CCCeehHHHHHHHHHcCCCceEEecC
Confidence 78899998888877 6667888889999988 79999999999998888777888754
No 11
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=78.72 E-value=17 Score=34.90 Aligned_cols=97 Identities=21% Similarity=0.102 Sum_probs=63.3
Q ss_pred HHhcccCCccEEEEccCCCCcHHHHHHHHHhhccCCCceeeeCCcc-cCCccccccc--cCCcceEEEEecCCChhHHHH
Q 040450 76 SKAGEERVKNLTLYNYPSPSGSLSALFAHLFHFHLNLPCLLLPFSS-VEPLRVEDLC--IEGLERVYLLDFLGPKGFADA 152 (211)
Q Consensus 76 ~~~~~~~~p~lVLYHypC~DGf~AAlAAhL~~~~~~~p~~flP~s~-~~P~~veDlp--~~~~~~VYILDFSfp~~fl~~ 152 (211)
+|+-+.....-+|-+.+..|...+...+..+-.-. +..+..-.+ -+|+....+. ...+.+|.++||-.+...+++
T Consensus 119 r~iR~~G~m~~~I~~~~~~~~~~~~~~~~~~~~~~--~~dlv~~VSt~~~~~~~~~~~~~~~~~~Vv~iD~GvK~nIlr~ 196 (368)
T COG0505 119 RKIREKGAMKGVIATGPELDPAKLLERARAFPGIL--GTDLVKEVSTKEPYTWPGLNGGGEPGKHVVVIDFGVKRNILRE 196 (368)
T ss_pred HHHHhcCCcceEeecCcccChHHHHHHHhhcCCCC--cccccceeecCCceeccccccCCCCCcEEEEEEcCccHHHHHH
Confidence 34445555678999999888874444443322211 122222111 2333322211 234689999999999999999
Q ss_pred HhhhCCCcEEEeecchhhHhhhc
Q 040450 153 LSRRSSCEVIGFDHRKSVLGQIT 175 (211)
Q Consensus 153 Ls~ka~~sVIvLDHHKSA~e~L~ 175 (211)
|.++- |+|+++-++-||.+-|.
T Consensus 197 L~~rg-~~vtVVP~~t~~eeIl~ 218 (368)
T COG0505 197 LVKRG-CRVTVVPADTSAEEILA 218 (368)
T ss_pred HHHCC-CeEEEEcCCCCHHHHHh
Confidence 99999 89999999999988654
No 12
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=73.62 E-value=12 Score=27.55 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=27.6
Q ss_pred cccchhHHHHH-HHhcccCCccEEEEccCCCCcHHHHHHHHHhhc
Q 040450 65 GFRSDAALEAI-SKAGEERVKNLTLYNYPSPSGSLSALFAHLFHF 108 (211)
Q Consensus 65 ~~rs~aaleai-~~~~~~~~p~lVLYHypC~DGf~AAlAAhL~~~ 108 (211)
.|...+.+++. +.....+..++++| |..|..|+.+++.+..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~iv~y---c~~g~~s~~~~~~l~~ 100 (118)
T cd01449 59 TFKSPEELRALFAALGITPDKPVIVY---CGSGVTACVLLLALEL 100 (118)
T ss_pred CcCCHHHHHHHHHHcCCCCCCCEEEE---CCcHHHHHHHHHHHHH
Confidence 35555555554 33344455689999 9999999998876544
No 13
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=73.58 E-value=9.2 Score=33.46 Aligned_cols=66 Identities=18% Similarity=0.062 Sum_probs=40.3
Q ss_pred cccchhHHHHHHH-hcccCCccEEEEccCCCCcHHHHHHHHHhhccCCCceeeeCCcccCCccc-cccccCC
Q 040450 65 GFRSDAALEAISK-AGEERVKNLTLYNYPSPSGSLSALFAHLFHFHLNLPCLLLPFSSVEPLRV-EDLCIEG 134 (211)
Q Consensus 65 ~~rs~aaleai~~-~~~~~~p~lVLYHypC~DGf~AAlAAhL~~~~~~~p~~flP~s~~~P~~v-eDlp~~~ 134 (211)
.|++.+.|+++-+ ...+...++++| |..|.-|+.+++.....+-..+.++..+-.+ +.. .++|++.
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~~~ii~y---C~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~e-W~~~~~~P~~~ 279 (281)
T PRK11493 212 ELKTTDELDAIFFGRGVSFDRPIIAS---CGSGVTAAVVVLALATLDVPNVKLYDGAWSE-WGARADLPVEP 279 (281)
T ss_pred CcCCHHHHHHHHHhcCCCCCCCEEEE---CCcHHHHHHHHHHHHHcCCCCceeeCCCHHH-HccCCCCCcCC
Confidence 4888888888743 333444467777 8889999988776554444446666654332 222 3555543
No 14
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=70.04 E-value=13 Score=29.61 Aligned_cols=42 Identities=19% Similarity=0.093 Sum_probs=27.2
Q ss_pred ccchhHHHHH-HHhcccCCccEEEEccCCCC---cHHHHHHHHHhhccC
Q 040450 66 FRSDAALEAI-SKAGEERVKNLTLYNYPSPS---GSLSALFAHLFHFHL 110 (211)
Q Consensus 66 ~rs~aaleai-~~~~~~~~p~lVLYHypC~D---Gf~AAlAAhL~~~~~ 110 (211)
+-+.+-++++ .+...+...++|+| |.+ |..|+.++|.+...+
T Consensus 77 ~p~~~~~~~~~~~~GI~~~~~vVvY---~~~~~~g~~A~r~~~~l~~~G 122 (138)
T cd01445 77 EPSEAEFAAMFEAKGIDLDKHLIAT---DGDDLGGFTACHIALAARLCG 122 (138)
T ss_pred CCCHHHHHHHHHHcCCCCCCeEEEE---CCCCCcchHHHHHHHHHHHcC
Confidence 3344444444 55566666789999 765 888998888755433
No 15
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=64.57 E-value=15 Score=36.64 Aligned_cols=53 Identities=11% Similarity=-0.065 Sum_probs=37.5
Q ss_pred ccccchhHHHHHH-HhcccCCccEEEEccCCCCcHHHHHHHHHhhccCCCceeeeCC
Q 040450 64 RGFRSDAALEAIS-KAGEERVKNLTLYNYPSPSGSLSALFAHLFHFHLNLPCLLLPF 119 (211)
Q Consensus 64 r~~rs~aaleai~-~~~~~~~p~lVLYHypC~DGf~AAlAAhL~~~~~~~p~~flP~ 119 (211)
..|++.+.|+++- ....+...++++| |-.|..|+.++|.....+-..+..+..
T Consensus 203 ~~lk~~~el~~~~~~~Gi~~~~~VVvY---C~sG~rAa~~~~~L~~lG~~~V~~YdG 256 (610)
T PRK09629 203 RNLRIRQDMPEILRDLGITPDKEVITH---CQTHHRSGFTYLVAKALGYPRVKAYAG 256 (610)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEE---CCCChHHHHHHHHHHHcCCCCcEEeCC
Confidence 3588988888884 3345555689999 999999998888765444334666654
No 16
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=61.76 E-value=25 Score=26.13 Aligned_cols=43 Identities=12% Similarity=0.154 Sum_probs=27.3
Q ss_pred cccchhHHHHH-HHhcccCCccEEEEccCCCC-cHHHHHHHHHhhccC
Q 040450 65 GFRSDAALEAI-SKAGEERVKNLTLYNYPSPS-GSLSALFAHLFHFHL 110 (211)
Q Consensus 65 ~~rs~aaleai-~~~~~~~~p~lVLYHypC~D-Gf~AAlAAhL~~~~~ 110 (211)
-|.+.+.++.+ +....+...++++| |.. |..|+.+++.+...+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~vv~~---c~~g~~~a~~~~~~l~~~G 104 (122)
T cd01448 60 MLPSPEEFAELLGSLGISNDDTVVVY---DDGGGFFAARAWWTLRYFG 104 (122)
T ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEE---CCCCCccHHHHHHHHHHcC
Confidence 45555555554 33345556688999 777 588888887665544
No 17
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=61.48 E-value=40 Score=29.76 Aligned_cols=111 Identities=15% Similarity=0.148 Sum_probs=72.0
Q ss_pred cEEEEccCCCCcHHHHHHHHHhhccCCCceeeeCCcccCCccccccccCCcceEEEEecCCChhHHH---HHhhhCCCcE
Q 040450 85 NLTLYNYPSPSGSLSALFAHLFHFHLNLPCLLLPFSSVEPLRVEDLCIEGLERVYLLDFLGPKGFAD---ALSRRSSCEV 161 (211)
Q Consensus 85 ~lVLYHypC~DGf~AAlAAhL~~~~~~~p~~flP~s~~~P~~veDlp~~~~~~VYILDFSfp~~fl~---~Ls~ka~~sV 161 (211)
.+.+|- -=.+|..|-++++.+. +.+.++..+...++....... ...+.-|+.+.|||-..-+. +++++...+|
T Consensus 132 rI~~~G-~g~S~~vA~~~~~~l~-~ig~~~~~~~d~~~~~~~~~~--~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~v 207 (281)
T COG1737 132 RIYFFG-LGSSGLVASDLAYKLM-RIGLNVVALSDTHGQLMQLAL--LTPGDVVIAISFSGYTREIVEAAELAKERGAKV 207 (281)
T ss_pred eEEEEE-echhHHHHHHHHHHHH-HcCCceeEecchHHHHHHHHh--CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcE
Confidence 344444 6677888888888644 477789998887774322222 34567889999999877665 3444444688
Q ss_pred EEeecc-hhhHhhhcC---CCCCCeEEEEecCCCcchhhHHhh
Q 040450 162 IGFDHR-KSVLGQITS---DHPDKVTFYVDLEKSSSTAAYEYF 200 (211)
Q Consensus 162 IvLDHH-KSA~e~L~~---~~~~nl~i~FDMeKSGA~lAwdYF 200 (211)
|.|=.. .|-+.++++ ..+.+-.-.+++ .++++++.=+.
T Consensus 208 IaiT~~~~spla~~Ad~~L~~~~~~~~~~~~-~~~s~~a~l~l 249 (281)
T COG1737 208 IAITDSADSPLAKLADIVLLVPVAEESFFRS-PISSRIAQLAL 249 (281)
T ss_pred EEEcCCCCCchhhhhceEEeccCccccchhh-hHHHHHHHHHH
Confidence 888666 999999998 223434445555 44455444333
No 18
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=60.57 E-value=6.6 Score=40.05 Aligned_cols=89 Identities=15% Similarity=0.066 Sum_probs=57.5
Q ss_pred CccEEEEcc-CCCCcHHHHHHHHHhhccCCCc--eeeeCCcccC------------------Cccccc-cc-cCCcceEE
Q 040450 83 VKNLTLYNY-PSPSGSLSALFAHLFHFHLNLP--CLLLPFSSVE------------------PLRVED-LC-IEGLERVY 139 (211)
Q Consensus 83 ~p~lVLYHy-pC~DGf~AAlAAhL~~~~~~~p--~~flP~s~~~------------------P~~veD-lp-~~~~~~VY 139 (211)
...++.=|. |=-|-.|||.+..++-+..+.. +.+=|..-.. -.+.+| .. ..+..-+.
T Consensus 338 d~VfImGHk~pDmDalGsAig~~~~A~~~~~~a~~v~dp~~~~pdveRai~~i~~~~e~~~~fit~~~A~~l~t~~sLLv 417 (655)
T COG3887 338 DNVFIMGHKFPDMDALGSAIGMQKFASMNNKEAFAVLDPEDMSPDVERAINEIEKNSEGKTRFITPSDAMELSTERSLLV 417 (655)
T ss_pred CcEEEEccCCCChHHHHHHHHHHHHHHhcccccEEEECccccChhHHHHHHHHHhcchhhheeccHHHHhhccCCCcEEE
Confidence 445666687 6789999999998888876653 2222221110 000010 01 13457788
Q ss_pred EEecCCChhHHH-HHhhhCCCcEEEeecchhhHh
Q 040450 140 LLDFLGPKGFAD-ALSRRSSCEVIGFDHRKSVLG 172 (211)
Q Consensus 140 ILDFSfp~~fl~-~Ls~ka~~sVIvLDHHKSA~e 172 (211)
+||=+-|.=++. ++-.++. +|||+|||.-..+
T Consensus 418 iVDt~k~s~vl~~~~~~~~~-kvVViDHHRR~e~ 450 (655)
T COG3887 418 IVDTHKPSLVLNEEFLDKFE-KVVVIDHHRRDED 450 (655)
T ss_pred EEecCCcceecCHHHHHhhc-eEEEEeccccccc
Confidence 999988877774 6777774 8999999998776
No 19
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=60.43 E-value=8.5 Score=36.72 Aligned_cols=73 Identities=15% Similarity=0.154 Sum_probs=42.6
Q ss_pred ccccccccCCcceEEEEecCCChhHHHHHhhhCCCcEEEeecchhhHhhhcCCCCCCeEEEEecCCCcchhhHHhhhhh
Q 040450 125 LRVEDLCIEGLERVYLLDFLGPKGFADALSRRSSCEVIGFDHRKSVLGQITSDHPDKVTFYVDLEKSSSTAAYEYFSSK 203 (211)
Q Consensus 125 ~~veDlp~~~~~~VYILDFSfp~~fl~~Ls~ka~~sVIvLDHHKSA~e~L~~~~~~nl~i~FDMeKSGA~lAwdYF~~k 203 (211)
++..|+-......+.|+|.......+..+. .+. -+.++|||+-. .+... ..+.++..---|-++++|++|.+.
T Consensus 294 it~~dl~~~~~~~~iLVD~~e~~q~~~~~~-~~~-i~~iiDHH~~~--~~~~~--~pi~~~~~~~gst~tiv~~~~~~~ 366 (546)
T PRK14869 294 ISRYHLLSPVRKKVILVDHNEKSQAVEGIE-EAE-ILEIIDHHRLG--DIQTS--NPIFFRNEPVGSTSTIVARMYREN 366 (546)
T ss_pred EEHHHhhccccCceEEEcCccccccccchh-hce-EEEEecCCccC--CCCCC--CCcEEEeeeeeeHHHHHHHHHHHc
Confidence 344455445557788999887765544443 342 46788999832 23222 223333333456678999998754
No 20
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=59.72 E-value=19 Score=25.89 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=19.7
Q ss_pred cCCccEEEEccCCCCcHHHHHHHHHhhcc
Q 040450 81 ERVKNLTLYNYPSPSGSLSALFAHLFHFH 109 (211)
Q Consensus 81 ~~~p~lVLYHypC~DGf~AAlAAhL~~~~ 109 (211)
++..++++| |..|..|+.+++.+-..
T Consensus 64 ~~~~~ivv~---c~~g~~s~~~~~~l~~~ 89 (106)
T cd01519 64 SKDKELIFY---CKAGVRSKAAAELARSL 89 (106)
T ss_pred CCCCeEEEE---CCCcHHHHHHHHHHHHc
Confidence 445578999 88999999988875443
No 21
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=59.45 E-value=17 Score=26.35 Aligned_cols=25 Identities=16% Similarity=0.100 Sum_probs=19.0
Q ss_pred CccEEEEccCCCCcHHHHHHHHHhhccC
Q 040450 83 VKNLTLYNYPSPSGSLSALFAHLFHFHL 110 (211)
Q Consensus 83 ~p~lVLYHypC~DGf~AAlAAhL~~~~~ 110 (211)
..+++|| |..|..|+.+++.+...+
T Consensus 58 ~~~vv~~---c~~g~rs~~~~~~l~~~G 82 (101)
T cd01528 58 DKDIVVL---CHHGGRSMQVAQWLLRQG 82 (101)
T ss_pred CCeEEEE---eCCCchHHHHHHHHHHcC
Confidence 4578999 888988888887765543
No 22
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=57.84 E-value=17 Score=25.57 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=20.7
Q ss_pred cCCccEEEEccCCCCcHHHHHHHHHhhccC
Q 040450 81 ERVKNLTLYNYPSPSGSLSALFAHLFHFHL 110 (211)
Q Consensus 81 ~~~p~lVLYHypC~DGf~AAlAAhL~~~~~ 110 (211)
+...++++| |.+|..|+.+++....-+
T Consensus 54 ~~~~~ivv~---c~~g~~s~~a~~~l~~~G 80 (96)
T cd01444 54 DRDRPVVVY---CYHGNSSAQLAQALREAG 80 (96)
T ss_pred CCCCCEEEE---eCCCChHHHHHHHHHHcC
Confidence 345588999 789999999998766543
No 23
>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.31 E-value=11 Score=30.70 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=26.6
Q ss_pred ccccchhHHHHHHHhcccCCccEEEEcc--CCCCcH
Q 040450 64 RGFRSDAALEAISKAGEERVKNLTLYNY--PSPSGS 97 (211)
Q Consensus 64 r~~rs~aaleai~~~~~~~~p~lVLYHy--pC~DGf 97 (211)
|-.-|+|||+-|++...+-+| +++|. -|.||.
T Consensus 6 ~V~aT~aAl~Li~~l~~~hgp--vmFHQSGGCCDGS 39 (116)
T COG3564 6 RVLATPAALDLIAELQAEHGP--VMFHQSGGCCDGS 39 (116)
T ss_pred ceecCHHHHHHHHHHHHhcCC--EEEeccCCccCCC
Confidence 455689999999999888888 77886 599995
No 24
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=54.97 E-value=36 Score=23.05 Aligned_cols=29 Identities=31% Similarity=0.288 Sum_probs=20.8
Q ss_pred cccCCccEEEEccCCCCcHHHHHHHHHhhccC
Q 040450 79 GEERVKNLTLYNYPSPSGSLSALFAHLFHFHL 110 (211)
Q Consensus 79 ~~~~~p~lVLYHypC~DGf~AAlAAhL~~~~~ 110 (211)
......++++| |..|.-|+.+++.+...+
T Consensus 52 ~~~~~~~iv~~---c~~g~~a~~~~~~l~~~G 80 (100)
T smart00450 52 GLDKDKPVVVY---CRSGNRSAKAAWLLRELG 80 (100)
T ss_pred CCCCCCeEEEE---eCCCcHHHHHHHHHHHcC
Confidence 34455688888 788888888887765544
No 25
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=54.80 E-value=20 Score=27.66 Aligned_cols=26 Identities=12% Similarity=0.100 Sum_probs=18.2
Q ss_pred ccCCccEEEEccCCC-CcHHHHHHHHHhhc
Q 040450 80 EERVKNLTLYNYPSP-SGSLSALFAHLFHF 108 (211)
Q Consensus 80 ~~~~p~lVLYHypC~-DGf~AAlAAhL~~~ 108 (211)
.++..++++| |. .|.-|+.+|+....
T Consensus 65 ~~~~~~vv~y---C~~sg~rs~~aa~~L~~ 91 (121)
T cd01530 65 KKKRRVLIFH---CEFSSKRGPRMARHLRN 91 (121)
T ss_pred cCCCCEEEEE---CCCccccHHHHHHHHHH
Confidence 3445678888 75 88888888876544
No 26
>KOG4129 consensus Exopolyphosphatases and related proteins [Energy production and conversion]
Probab=54.75 E-value=13 Score=35.76 Aligned_cols=63 Identities=21% Similarity=0.214 Sum_probs=40.0
Q ss_pred ceEEEEecCCCh--hHHHHHhhhCCCcEEEeecchhhHhhhcCCCCCCeEEEEecCCCcchhhHHhhhhhhccC
Q 040450 136 ERVYLLDFLGPK--GFADALSRRSSCEVIGFDHRKSVLGQITSDHPDKVTFYVDLEKSSSTAAYEYFSSKLVDL 207 (211)
Q Consensus 136 ~~VYILDFSfp~--~fl~~Ls~ka~~sVIvLDHHKSA~e~L~~~~~~nl~i~FDMeKSGA~lAwdYF~~kl~~~ 207 (211)
=.+||||=.-++ +...+++ -=..++|||..-.. ..+.|+ +.+|..=|-++|+..|+-+++-+.
T Consensus 104 l~~~LVDhn~l~~~d~~~e~~----~i~~IiDhhp~e~~-~~~a~~----~~Ie~~gScsTLV~~y~l~~~~~~ 168 (377)
T KOG4129|consen 104 LKLYLVDHNVLPSKDLVNEIA----VIEGIIDHHPDEDK-HLPACP----RIIELSGSCSTLVSRYILEELQEL 168 (377)
T ss_pred ceEEEecCCCCcccccccccc----ceeeeeccCccccc-CCCccc----eeEEeecchHHHHHHHHHhhcchh
Confidence 478999987776 3333443 12345566665433 333454 556666699999999999887543
No 27
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=52.61 E-value=17 Score=25.89 Aligned_cols=25 Identities=28% Similarity=0.269 Sum_probs=18.3
Q ss_pred cCCccEEEEccCCCCcHHHHHHHHHhhc
Q 040450 81 ERVKNLTLYNYPSPSGSLSALFAHLFHF 108 (211)
Q Consensus 81 ~~~p~lVLYHypC~DGf~AAlAAhL~~~ 108 (211)
++..++++| |..|..|+.+++....
T Consensus 59 ~~~~~ivv~---c~~g~~s~~~~~~l~~ 83 (103)
T cd01447 59 AEDKPFVFY---CASGWRSALAGKTLQD 83 (103)
T ss_pred CCCCeEEEE---cCCCCcHHHHHHHHHH
Confidence 445689999 7778888888776544
No 28
>COG1227 PPX1 Inorganic pyrophosphatase/exopolyphosphatase [Energy production and conversion]
Probab=48.63 E-value=24 Score=33.19 Aligned_cols=65 Identities=17% Similarity=0.202 Sum_probs=38.2
Q ss_pred ceEEEEecCCChhHHHHHhhhCCCcE-EEeecchhhHhhhcCCCCCCeEEEEecCCCcchhhHHhhhhhhccC
Q 040450 136 ERVYLLDFLGPKGFADALSRRSSCEV-IGFDHRKSVLGQITSDHPDKVTFYVDLEKSSSTAAYEYFSSKLVDL 207 (211)
Q Consensus 136 ~~VYILDFSfp~~fl~~Ls~ka~~sV-IvLDHHKSA~e~L~~~~~~nl~i~FDMeKSGA~lAwdYF~~kl~~~ 207 (211)
..|||||-.--+-=+..+. .++| -++|||+-+-= .++..+-+..-=-=|-+++.+.+|.+...+.
T Consensus 69 ~~viLVDhNe~~qs~~~~~---d~~I~~IIDHHr~~~~----~t~~p~~~~~epVGctsTIv~~~~~e~~~~~ 134 (311)
T COG1227 69 KKVILVDHNEFQQSVDDIE---DAEILGIIDHHRLADF----ETAAPLYIRNEPVGCTSTIVYRLFKEDGIEI 134 (311)
T ss_pred CcEEEEeccccccCccccc---cceEEEEeeeeeecCc----ccCCCcEEEecCCchHHHHHHHHHHHhcCcc
Confidence 6999999654333333333 2334 47899986532 2333334333334466788888888766554
No 29
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=47.68 E-value=96 Score=26.92 Aligned_cols=58 Identities=16% Similarity=-0.078 Sum_probs=41.2
Q ss_pred cccCCccEEEEccCCCCcHHHHHHHHHhhccCCCceeeeCCcccCCccccccccCCcceEEEEecCCChhHHHHHhhhCC
Q 040450 79 GEERVKNLTLYNYPSPSGSLSALFAHLFHFHLNLPCLLLPFSSVEPLRVEDLCIEGLERVYLLDFLGPKGFADALSRRSS 158 (211)
Q Consensus 79 ~~~~~p~lVLYHypC~DGf~AAlAAhL~~~~~~~p~~flP~s~~~P~~veDlp~~~~~~VYILDFSfp~~fl~~Ls~ka~ 158 (211)
.......++||-.||.+=..+.||++. . |-.+.++|...+.+.+..+.++++
T Consensus 42 g~~~~~~V~i~~~n~~~~~~~~~A~~~---~-------------------------G~~~v~l~~~~~~~~~~~~l~~~~ 93 (417)
T PF00501_consen 42 GVKKGDRVAILLPNSIEFVVAFLACLR---A-------------------------GAIPVPLDPSLSEDELRHILRQSG 93 (417)
T ss_dssp TSSTTSEEEEEESSSHHHHHHHHHHHH---T-------------------------T-EEEEEETTSSHHHHHHHHHHHT
T ss_pred CCCccccccccCCccceeeeeeccccc---c-------------------------cccccccccccccccccccccccc
Confidence 344455788898899888888888854 1 245556677777788887777777
Q ss_pred CcEEEe
Q 040450 159 CEVIGF 164 (211)
Q Consensus 159 ~sVIvL 164 (211)
+++|+.
T Consensus 94 ~~~ii~ 99 (417)
T PF00501_consen 94 PKVIIT 99 (417)
T ss_dssp ESEEEE
T ss_pred eeEEEE
Confidence 777775
No 30
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=46.64 E-value=12 Score=27.92 Aligned_cols=15 Identities=27% Similarity=0.665 Sum_probs=12.7
Q ss_pred CCcHHHHHHHHHhhc
Q 040450 94 PSGSLSALFAHLFHF 108 (211)
Q Consensus 94 ~DGf~AAlAAhL~~~ 108 (211)
.-|.||+|++||++.
T Consensus 11 sQG~fA~LFv~Ll~y 25 (71)
T PF10960_consen 11 SQGIFAVLFVWLLFY 25 (71)
T ss_pred HcCcHHHHHHHHHHH
Confidence 359999999999775
No 31
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=44.10 E-value=50 Score=27.05 Aligned_cols=34 Identities=12% Similarity=-0.038 Sum_probs=22.7
Q ss_pred cCCccEEEEccCCCCcH-HHHHHHHHhhccCCCceeee
Q 040450 81 ERVKNLTLYNYPSPSGS-LSALFAHLFHFHLNLPCLLL 117 (211)
Q Consensus 81 ~~~p~lVLYHypC~DGf-~AAlAAhL~~~~~~~p~~fl 117 (211)
++..++|+| |..|. .|+.++++....+-..+..+
T Consensus 114 ~~d~~IVvY---C~~G~~~S~~aa~~L~~~G~~~V~~l 148 (162)
T TIGR03865 114 DKDRPLVFY---CLADCWMSWNAAKRALAYGYSNVYWY 148 (162)
T ss_pred CCCCEEEEE---ECCCCHHHHHHHHHHHhcCCcceEEe
Confidence 455689999 88886 67778877665554344443
No 32
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=42.94 E-value=69 Score=23.53 Aligned_cols=26 Identities=8% Similarity=-0.027 Sum_probs=18.8
Q ss_pred cCCccEEEEccCCCCcHHHHHHHHHhhcc
Q 040450 81 ERVKNLTLYNYPSPSGSLSALFAHLFHFH 109 (211)
Q Consensus 81 ~~~p~lVLYHypC~DGf~AAlAAhL~~~~ 109 (211)
++..++++| |..|.-|+.+++.....
T Consensus 64 ~~~~~ivv~---C~~G~rs~~a~~~L~~~ 89 (109)
T cd01533 64 DPRTPIVVN---CAGRTRSIIGAQSLINA 89 (109)
T ss_pred CCCCeEEEE---CCCCchHHHHHHHHHHC
Confidence 334578999 99999988777765443
No 33
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=42.44 E-value=1e+02 Score=22.83 Aligned_cols=75 Identities=12% Similarity=0.030 Sum_probs=43.1
Q ss_pred HHHHHHHhhccCCCceeeeCCcccCCccccccccCCcceEEEEecCCChhHHHHHhhh---CCCcEEE-eecchhhHhhh
Q 040450 99 SALFAHLFHFHLNLPCLLLPFSSVEPLRVEDLCIEGLERVYLLDFLGPKGFADALSRR---SSCEVIG-FDHRKSVLGQI 174 (211)
Q Consensus 99 AAlAAhL~~~~~~~p~~flP~s~~~P~~veDlp~~~~~~VYILDFSfp~~fl~~Ls~k---a~~sVIv-LDHHKSA~e~L 174 (211)
|-++++++.+-++.++...+..... .......++.-++++-+||-...+.++.+. ...+||. =+...|.+.++
T Consensus 14 a~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s~la~~ 90 (126)
T cd05008 14 ALVAKYLLERLAGIPVEVEAASEFR---YRRPLLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVAITNVVGSTLARE 90 (126)
T ss_pred HHHHHHHHHHhcCCceEEEehhHhh---hcCCCCCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHh
Confidence 3344444444344677766621211 111123456778999999987766544333 2235664 56788999988
Q ss_pred cC
Q 040450 175 TS 176 (211)
Q Consensus 175 ~~ 176 (211)
++
T Consensus 91 ad 92 (126)
T cd05008 91 AD 92 (126)
T ss_pred CC
Confidence 87
No 34
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=41.70 E-value=38 Score=32.21 Aligned_cols=36 Identities=11% Similarity=0.133 Sum_probs=31.4
Q ss_pred cceEEEEecCCChhHHHHHhhhCCCcEEEeecchhhH
Q 040450 135 LERVYLLDFLGPKGFADALSRRSSCEVIGFDHRKSVL 171 (211)
Q Consensus 135 ~~~VYILDFSfp~~fl~~Ls~ka~~sVIvLDHHKSA~ 171 (211)
+.+|.|+||+++...++.|.+.- +.|+++.+..++.
T Consensus 192 ~~~I~viD~g~k~ni~~~L~~~G-~~v~vvp~~~~~~ 227 (382)
T CHL00197 192 QLKIIVIDFGVKYNILRRLKSFG-CSITVVPATSPYQ 227 (382)
T ss_pred CCEEEEEECCcHHHHHHHHHHCC-CeEEEEcCCCCHH
Confidence 57999999999999999999887 6999998876643
No 35
>PLN02246 4-coumarate--CoA ligase
Probab=40.78 E-value=1.2e+02 Score=27.86 Aligned_cols=27 Identities=22% Similarity=0.031 Sum_probs=20.1
Q ss_pred cccCCccEEEEccCCCCcHHHHHHHHH
Q 040450 79 GEERVKNLTLYNYPSPSGSLSALFAHL 105 (211)
Q Consensus 79 ~~~~~p~lVLYHypC~DGf~AAlAAhL 105 (211)
.......++||-.||++-..+-||++.
T Consensus 71 g~~~gd~V~i~~~~~~~~~~~~la~~~ 97 (537)
T PLN02246 71 GIRQGDVVMLLLPNCPEFVLAFLGASR 97 (537)
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHH
Confidence 344445789998999988888888754
No 36
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=40.42 E-value=81 Score=31.19 Aligned_cols=58 Identities=21% Similarity=0.364 Sum_probs=40.7
Q ss_pred ccEEEEcc-CCCCcHHHHHHHHHhhccCCCceeeeCCcccCCccccccccCCcceEEEEecCCChhHHHHHhhhCCCcEE
Q 040450 84 KNLTLYNY-PSPSGSLSALFAHLFHFHLNLPCLLLPFSSVEPLRVEDLCIEGLERVYLLDFLGPKGFADALSRRSSCEVI 162 (211)
Q Consensus 84 p~lVLYHy-pC~DGf~AAlAAhL~~~~~~~p~~flP~s~~~P~~veDlp~~~~~~VYILDFSfp~~fl~~Ls~ka~~sVI 162 (211)
+.+-|||| |-.+ .....|++++|.- +..-||+|.+-.+.+++.+.++- -+|+
T Consensus 172 ~~~eLi~Y~P~t~------------~~~~~PlLiVp~~--------------i~k~yilDL~p~~Slv~~L~~qG-f~V~ 224 (532)
T TIGR01838 172 ELFQLIQYEPTTE------------TVHKTPLLIVPPW--------------INKYYILDLRPQNSLVRWLVEQG-HTVF 224 (532)
T ss_pred CcEEEEEeCCCCC------------cCCCCcEEEECcc--------------cccceeeecccchHHHHHHHHCC-cEEE
Confidence 35667888 3433 1245688888852 36778888888888888888776 4888
Q ss_pred Eeecch
Q 040450 163 GFDHRK 168 (211)
Q Consensus 163 vLDHHK 168 (211)
++|..-
T Consensus 225 ~iDwrg 230 (532)
T TIGR01838 225 VISWRN 230 (532)
T ss_pred EEECCC
Confidence 888753
No 37
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=40.11 E-value=1.8e+02 Score=25.75 Aligned_cols=49 Identities=24% Similarity=0.107 Sum_probs=33.8
Q ss_pred chh-HHHHHHHhcccCCccEEEEcc-CCCCcHHHHHHHHHhhccCCCceeeeCCcc
Q 040450 68 SDA-ALEAISKAGEERVKNLTLYNY-PSPSGSLSALFAHLFHFHLNLPCLLLPFSS 121 (211)
Q Consensus 68 s~a-aleai~~~~~~~~p~lVLYHy-pC~DGf~AAlAAhL~~~~~~~p~~flP~s~ 121 (211)
.+. +++.|.+-.. ..+..||-++ ||+.|.+.-+.... ...++.++|.-|
T Consensus 54 ~~~~~l~~i~~~~~-g~~v~VLasGDP~f~G~g~~l~~~~----~~~~v~iIPgiS 104 (210)
T COG2241 54 FDAESLEEILAERK-GRDVVVLASGDPLFSGVGRLLRRKF----SCEEVEIIPGIS 104 (210)
T ss_pred cchHHHHHHHHHhC-CCCeEEEecCCcchhhhHHHHHHhc----CccceEEecChh
Confidence 344 6777766543 4667899998 89999998877643 224677888644
No 38
>PF08087 Toxin_18: Conotoxin O-superfamily; InterPro: IPR012623 This family consists of members of the conotoxin O-superfamily. The O-superfamily of conotoxins consists of 3 groups of Conus peptides that belong to the same structural group. These 3 groups differ in their pharmacological properties: the w-conotoxins which inhibit calcium channels, the delta-conotoxins which slow down the inactivation rate of voltage -sensitive sodium channels and the muO-conotoxins block the voltage sensitive sodium currents [].
Probab=38.76 E-value=11 Score=24.61 Aligned_cols=19 Identities=37% Similarity=0.467 Sum_probs=16.1
Q ss_pred EEEEccCCCCcHHHHHHHH
Q 040450 86 LTLYNYPSPSGSLSALFAH 104 (211)
Q Consensus 86 lVLYHypC~DGf~AAlAAh 104 (211)
-|-|+|.|.+|+-+|.+-.
T Consensus 9 nC~~~~ecCSGAcSa~F~~ 27 (31)
T PF08087_consen 9 NCKYSYECCSGACSAAFGF 27 (31)
T ss_pred ccccchhhhcccchHHHhc
Confidence 4889999999999988753
No 39
>PRK07470 acyl-CoA synthetase; Validated
Probab=38.56 E-value=3e+02 Score=25.06 Aligned_cols=60 Identities=8% Similarity=-0.132 Sum_probs=43.6
Q ss_pred ccCCccEEEEccCCCCcHHHHHHHHHhhccCCCceeeeCCcccCCccccccccCCcceEEEEecCCChhHHHHHhhhCCC
Q 040450 80 EERVKNLTLYNYPSPSGSLSALFAHLFHFHLNLPCLLLPFSSVEPLRVEDLCIEGLERVYLLDFLGPKGFADALSRRSSC 159 (211)
Q Consensus 80 ~~~~p~lVLYHypC~DGf~AAlAAhL~~~~~~~p~~flP~s~~~P~~veDlp~~~~~~VYILDFSfp~~fl~~Ls~ka~~ 159 (211)
......++||=.|+++-..+.||+.+ .|..+..+|..+|.+-+..+.+.+.+
T Consensus 54 ~~~g~~v~i~~~~~~~~~~~~lA~~~----------------------------~G~~~v~l~~~~~~~~~~~~~~~~~~ 105 (528)
T PRK07470 54 VRKGDRILVHSRNCNQMFESMFAAFR----------------------------LGAVWVPTNFRQTPDEVAYLAEASGA 105 (528)
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHh----------------------------CCeEEEecCccCCHHHHHHHHHhcCc
Confidence 34445777887778887777777743 12455667888888888888888888
Q ss_pred cEEEeecc
Q 040450 160 EVIGFDHR 167 (211)
Q Consensus 160 sVIvLDHH 167 (211)
++++.|..
T Consensus 106 ~~~i~~~~ 113 (528)
T PRK07470 106 RAMICHAD 113 (528)
T ss_pred eEEEEcch
Confidence 88888865
No 40
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=37.64 E-value=46 Score=23.92 Aligned_cols=24 Identities=29% Similarity=0.213 Sum_probs=17.1
Q ss_pred CccEEEEccCCCCcHHHHHHHHHhhcc
Q 040450 83 VKNLTLYNYPSPSGSLSALFAHLFHFH 109 (211)
Q Consensus 83 ~p~lVLYHypC~DGf~AAlAAhL~~~~ 109 (211)
..++++| |..|..|+.+++.+...
T Consensus 65 ~~~vv~~---c~~g~~s~~~a~~L~~~ 88 (105)
T cd01525 65 GKIIVIV---SHSHKHAALFAAFLVKC 88 (105)
T ss_pred CCeEEEE---eCCCccHHHHHHHHHHc
Confidence 3468888 77888888888765443
No 41
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=37.34 E-value=57 Score=23.33 Aligned_cols=26 Identities=12% Similarity=-0.023 Sum_probs=18.8
Q ss_pred cCCccEEEEccCCCCcHHHHHHHHHhhcc
Q 040450 81 ERVKNLTLYNYPSPSGSLSALFAHLFHFH 109 (211)
Q Consensus 81 ~~~p~lVLYHypC~DGf~AAlAAhL~~~~ 109 (211)
++..++++| |.+|.-|+.++....+.
T Consensus 52 ~~~~~iv~~---c~~g~~s~~~~~~L~~~ 77 (99)
T cd01527 52 VGANAIIFH---CRSGMRTQQNAERLAAI 77 (99)
T ss_pred CCCCcEEEE---eCCCchHHHHHHHHHHc
Confidence 334577887 99999888888765543
No 42
>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function.
Probab=37.29 E-value=47 Score=31.02 Aligned_cols=82 Identities=21% Similarity=0.198 Sum_probs=52.5
Q ss_pred cEEEEccCCCCcHHHHHHHHHhhccCCCceeeeCCccc-------------CCccccccccC-CcceEEEEecCCChhHH
Q 040450 85 NLTLYNYPSPSGSLSALFAHLFHFHLNLPCLLLPFSSV-------------EPLRVEDLCIE-GLERVYLLDFLGPKGFA 150 (211)
Q Consensus 85 ~lVLYHypC~DGf~AAlAAhL~~~~~~~p~~flP~s~~-------------~P~~veDlp~~-~~~~VYILDFSfp~~fl 150 (211)
.++|==.-+--+.+-||..+. .+.|..++..+|- +.+..||+... ....+.||||++..+++
T Consensus 138 ~vvl~SASSKTA~glA~~L~~----~~~~~~~vglTS~~N~~Fve~lg~Yd~V~~Yd~i~~l~~~~~~v~VDfaG~~~~~ 213 (314)
T PF11017_consen 138 QVVLSSASSKTAIGLAYCLKK----QRGPPKVVGLTSARNVAFVESLGCYDEVLTYDDIDSLDAPQPVVIVDFAGNGEVL 213 (314)
T ss_pred EEEEeccchHHHHHHHHHhhc----cCCCceEEEEecCcchhhhhccCCceEEeehhhhhhccCCCCEEEEECCCCHHHH
Confidence 455544444445555555433 4446677776664 34556666643 56889999999999999
Q ss_pred HHHhhhCC-----CcEEEeecchhh
Q 040450 151 DALSRRSS-----CEVIGFDHRKSV 170 (211)
Q Consensus 151 ~~Ls~ka~-----~sVIvLDHHKSA 170 (211)
.+|.+.-. +-+|++.|-+..
T Consensus 214 ~~Lh~~l~d~l~~~~~VG~th~~~~ 238 (314)
T PF11017_consen 214 AALHEHLGDNLVYSCLVGATHWDKV 238 (314)
T ss_pred HHHHHHHhhhhhEEEEEEccCcccc
Confidence 88876543 235677777654
No 43
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=37.14 E-value=44 Score=24.39 Aligned_cols=29 Identities=24% Similarity=0.127 Sum_probs=19.6
Q ss_pred CcceEEEEe-cCCChhHHHHHhhhCCCcEEE
Q 040450 134 GLERVYLLD-FLGPKGFADALSRRSSCEVIG 163 (211)
Q Consensus 134 ~~~~VYILD-FSfp~~fl~~Ls~ka~~sVIv 163 (211)
..-+||++| |.++++.+..|.++-+ .||+
T Consensus 25 ~~~~v~~iD~~~~~~~~I~~L~~~G~-~vic 54 (74)
T PF03537_consen 25 PDVDVVVIDLFDFSKEEIARLKAQGK-KVIC 54 (74)
T ss_dssp SS-SEEEE-SBS--HHHHHHHHHTT--EEEE
T ss_pred CCCCEEEECCccCCHHHHHHHHHCCC-EEEE
Confidence 457899999 8889999999988774 7765
No 44
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=36.19 E-value=1.8e+02 Score=25.52 Aligned_cols=47 Identities=11% Similarity=0.072 Sum_probs=27.3
Q ss_pred chhHHHHH-HHhcccCCccEEEEccCCCCcH-HHHHHHHHhhccCCCceeee
Q 040450 68 SDAALEAI-SKAGEERVKNLTLYNYPSPSGS-LSALFAHLFHFHLNLPCLLL 117 (211)
Q Consensus 68 s~aaleai-~~~~~~~~p~lVLYHypC~DGf-~AAlAAhL~~~~~~~p~~fl 117 (211)
+.+.++.+ .....+...++|+| |..|. .|+.++|.+...+...+.++
T Consensus 71 ~~~~~~~~~~~~Gi~~d~~VVvy---c~~~~~~a~~~~~~l~~~G~~~v~~l 119 (281)
T PRK11493 71 RPETFAVAMRELGVNQDKHLVVY---DEGNLFSAPRAWWMLRTFGVEKVSIL 119 (281)
T ss_pred CHHHHHHHHHHcCCCCCCEEEEE---CCCCCchHHHHHHHHHHhcCCcEEEc
Confidence 44555554 44455566689999 65544 46666665555444445554
No 45
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=35.92 E-value=66 Score=23.22 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=18.3
Q ss_pred CCccEEEEccCCCCcHHHHHHHHHhhc
Q 040450 82 RVKNLTLYNYPSPSGSLSALFAHLFHF 108 (211)
Q Consensus 82 ~~p~lVLYHypC~DGf~AAlAAhL~~~ 108 (211)
+..++++| |..|.-++.+++....
T Consensus 60 ~~~~ivvy---C~~G~rs~~a~~~L~~ 83 (101)
T cd01518 60 KGKKVLMY---CTGGIRCEKASAYLKE 83 (101)
T ss_pred CCCEEEEE---CCCchhHHHHHHHHHH
Confidence 34578999 8899999998876433
No 46
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=34.24 E-value=81 Score=22.54 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=16.4
Q ss_pred CCccEEEEccCCCCcHHHHHHHHHh
Q 040450 82 RVKNLTLYNYPSPSGSLSALFAHLF 106 (211)
Q Consensus 82 ~~p~lVLYHypC~DGf~AAlAAhL~ 106 (211)
...++++| |..|..++-+++..
T Consensus 55 ~~~~ivv~---c~~g~~s~~~~~~l 76 (96)
T cd01529 55 RATRYVLT---CDGSLLARFAAQEL 76 (96)
T ss_pred CCCCEEEE---eCChHHHHHHHHHH
Confidence 34578999 88888888877654
No 47
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=34.06 E-value=1.1e+02 Score=23.43 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=20.4
Q ss_pred cCCccEEEEccCCCCcHHHHHHHHHhhccC
Q 040450 81 ERVKNLTLYNYPSPSGSLSALFAHLFHFHL 110 (211)
Q Consensus 81 ~~~p~lVLYHypC~DGf~AAlAAhL~~~~~ 110 (211)
+...++++| |..|.-|+.+|+.....+
T Consensus 58 ~~~~~IVly---C~~G~rS~~aa~~L~~~G 84 (104)
T PRK10287 58 DKNDTVKLY---CNAGRQSGQAKEILSEMG 84 (104)
T ss_pred CCCCeEEEE---eCCChHHHHHHHHHHHcC
Confidence 444578999 999999999988765443
No 48
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family. Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.
Probab=33.87 E-value=1.9e+02 Score=26.13 Aligned_cols=59 Identities=14% Similarity=-0.097 Sum_probs=39.6
Q ss_pred ccCCccEEEEccCCCCcHHHHHHHHHhhccCCCceeeeCCcccCCccccccccCCcceEEEEecCCChhHHHHHhhhCCC
Q 040450 80 EERVKNLTLYNYPSPSGSLSALFAHLFHFHLNLPCLLLPFSSVEPLRVEDLCIEGLERVYLLDFLGPKGFADALSRRSSC 159 (211)
Q Consensus 80 ~~~~p~lVLYHypC~DGf~AAlAAhL~~~~~~~p~~flP~s~~~P~~veDlp~~~~~~VYILDFSfp~~fl~~Ls~ka~~ 159 (211)
......++||=.|+++-..+.||++. . |..+..+|+.++++-+..+.+..++
T Consensus 52 ~~~g~~v~l~~~~~~~~~~~~~a~~~-~---------------------------G~~~v~l~~~~~~~~l~~~~~~~~~ 103 (508)
T TIGR02262 52 VKREERVLLLMLDGVDFPIAFLGAIR-A---------------------------GIVPVALNTLLTADDYAYMLEDSRA 103 (508)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHH-c---------------------------CcEEeeccCCCCHHHHHHHHHhcCC
Confidence 44456788998899988888888854 1 2344555666666666666666666
Q ss_pred cEEEeec
Q 040450 160 EVIGFDH 166 (211)
Q Consensus 160 sVIvLDH 166 (211)
++++.|.
T Consensus 104 ~~~i~~~ 110 (508)
T TIGR02262 104 RVVFVSG 110 (508)
T ss_pred eEEEEch
Confidence 6666654
No 49
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=33.61 E-value=58 Score=23.40 Aligned_cols=25 Identities=12% Similarity=0.036 Sum_probs=17.4
Q ss_pred CccEEEEccCCCCcHH--HHHHHHHhhccC
Q 040450 83 VKNLTLYNYPSPSGSL--SALFAHLFHFHL 110 (211)
Q Consensus 83 ~p~lVLYHypC~DGf~--AAlAAhL~~~~~ 110 (211)
..+++|| |.+|.- |+.+++.....+
T Consensus 50 ~~~ivl~---c~~G~~~~s~~aa~~L~~~G 76 (92)
T cd01532 50 DTPIVVY---GEGGGEDLAPRAARRLSELG 76 (92)
T ss_pred CCeEEEE---eCCCCchHHHHHHHHHHHcC
Confidence 3478999 999853 678887655544
No 50
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=31.89 E-value=1.3e+02 Score=26.54 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=15.3
Q ss_pred ccEEEEccCCCCcHHHHHHHHHhhccCCCceeeeCC
Q 040450 84 KNLTLYNYPSPSGSLSALFAHLFHFHLNLPCLLLPF 119 (211)
Q Consensus 84 p~lVLYHypC~DGf~AAlAAhL~~~~~~~p~~flP~ 119 (211)
+.+.||||.+.-+ .....|++++|.
T Consensus 46 ~~~~l~~~~~~~~-----------~~~~~pvl~v~~ 70 (350)
T TIGR01836 46 DKVVLYRYTPVKD-----------NTHKTPLLIVYA 70 (350)
T ss_pred CcEEEEEecCCCC-----------cCCCCcEEEecc
Confidence 5678888865433 123457777764
No 51
>PRK06018 putative acyl-CoA synthetase; Provisional
Probab=31.15 E-value=1.7e+02 Score=27.02 Aligned_cols=26 Identities=0% Similarity=-0.344 Sum_probs=20.2
Q ss_pred ccCCccEEEEccCCCCcHHHHHHHHH
Q 040450 80 EERVKNLTLYNYPSPSGSLSALFAHL 105 (211)
Q Consensus 80 ~~~~p~lVLYHypC~DGf~AAlAAhL 105 (211)
......+.+|=.||.+-+.+.|++..
T Consensus 61 ~~~gd~v~i~~~~~~~~~~~~la~~~ 86 (542)
T PRK06018 61 IKLGDRVATIAWNTWRHLEAWYGIMG 86 (542)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHh
Confidence 34445789998899999998888743
No 52
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=30.51 E-value=1e+02 Score=21.86 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=16.5
Q ss_pred CccEEEEccCCCCcHHHHHHHHHhh
Q 040450 83 VKNLTLYNYPSPSGSLSALFAHLFH 107 (211)
Q Consensus 83 ~p~lVLYHypC~DGf~AAlAAhL~~ 107 (211)
..++||| |.+|.-|..++..+.
T Consensus 51 ~~~vvl~---c~~g~~a~~~a~~L~ 72 (90)
T cd01524 51 DKEIIVY---CAVGLRGYIAARILT 72 (90)
T ss_pred CCcEEEE---cCCChhHHHHHHHHH
Confidence 4579999 888888777776543
No 53
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=29.85 E-value=2.2e+02 Score=24.44 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=45.4
Q ss_pred CcHHHHHHHHHhhccCCCceeeeCCcccCCccccccccCCcceEEEEecCCChhHHH---HHhhhCCCcEEEe-ecchhh
Q 040450 95 SGSLSALFAHLFHFHLNLPCLLLPFSSVEPLRVEDLCIEGLERVYLLDFLGPKGFAD---ALSRRSSCEVIGF-DHRKSV 170 (211)
Q Consensus 95 DGf~AAlAAhL~~~~~~~p~~flP~s~~~P~~veDlp~~~~~~VYILDFSfp~~fl~---~Ls~ka~~sVIvL-DHHKSA 170 (211)
.+..|-++++++. +.+.++......+........ +.++.-|+++.|++....+. +.+++...+||+| |.+.+-
T Consensus 139 s~~~A~~~~~~l~-~~g~~~~~~~d~~~~~~~~~~--~~~~Dv~I~iS~sg~~~~~~~~~~~ak~~ga~iI~IT~~~~s~ 215 (278)
T PRK11557 139 SGLVAQNFAWKLM-KIGINAVAERDMHALLATVQA--LSPDDLLLAISYSGERRELNLAADEALRVGAKVLAITGFTPNA 215 (278)
T ss_pred hHHHHHHHHHHHh-hCCCeEEEcCChHHHHHHHHh--CCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCCc
Confidence 3556666666544 455666654433332222222 24456788999998776543 3333333466665 667888
Q ss_pred HhhhcC
Q 040450 171 LGQITS 176 (211)
Q Consensus 171 ~e~L~~ 176 (211)
+.++++
T Consensus 216 la~~ad 221 (278)
T PRK11557 216 LQQRAS 221 (278)
T ss_pred hHHhCC
Confidence 888876
No 54
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=28.99 E-value=1.1e+02 Score=27.68 Aligned_cols=52 Identities=21% Similarity=0.220 Sum_probs=30.4
Q ss_pred ccccchhHHHHH-HHhcccCCccEEEEccCCCCc-HHHHHHHHHhhccCCCceeeeC
Q 040450 64 RGFRSDAALEAI-SKAGEERVKNLTLYNYPSPSG-SLSALFAHLFHFHLNLPCLLLP 118 (211)
Q Consensus 64 r~~rs~aaleai-~~~~~~~~p~lVLYHypC~DG-f~AAlAAhL~~~~~~~p~~flP 118 (211)
.-+-+.+.++.+ +....+...++|+| |..| ..|+-++|.+...+-..+.+|-
T Consensus 83 ~~lp~~~~~~~~l~~~Gi~~~~~VVvY---~~~g~~~a~r~~~~L~~~G~~~V~~Ld 136 (320)
T PLN02723 83 HMLPSEEAFAAAVSALGIENKDGVVVY---DGKGIFSAARVWWMFRVFGHEKVWVLD 136 (320)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCEEEEE---cCCCcchHHHHHHHHHHcCCCceEEcC
Confidence 334455555554 44455555689999 5555 4556666765555555566664
No 55
>PF03478 DUF295: Protein of unknown function (DUF295); InterPro: IPR005174 This family of proteins are found in plants. The function of the proteins is unknown.
Probab=28.49 E-value=49 Score=22.38 Aligned_cols=34 Identities=21% Similarity=0.102 Sum_probs=24.3
Q ss_pred CCCceeeeCCcccCCccccccccCCcceEEEEec
Q 040450 110 LNLPCLLLPFSSVEPLRVEDLCIEGLERVYLLDF 143 (211)
Q Consensus 110 ~~~p~~flP~s~~~P~~veDlp~~~~~~VYILDF 143 (211)
.+..++|+.....--.+++++|..++..||++|=
T Consensus 7 lGd~alFlg~~~~~~~~a~~~~g~~~n~IYf~~~ 40 (54)
T PF03478_consen 7 LGDRALFLGRNCSFSVSASDFPGLKGNCIYFLDD 40 (54)
T ss_pred cCCEEEEEeCCccEEEECCCCCCccCCEEEEecC
Confidence 3446778866444455667888888899998885
No 56
>KOG2923 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.35 E-value=29 Score=26.18 Aligned_cols=11 Identities=45% Similarity=1.071 Sum_probs=8.7
Q ss_pred EEEccCCCCcH
Q 040450 87 TLYNYPSPSGS 97 (211)
Q Consensus 87 VLYHypC~DGf 97 (211)
-.|+||||=|=
T Consensus 19 ~~y~yPCpCGD 29 (67)
T KOG2923|consen 19 QTYYYPCPCGD 29 (67)
T ss_pred CeEEcCCCCCC
Confidence 47999998773
No 57
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=28.18 E-value=99 Score=24.80 Aligned_cols=32 Identities=19% Similarity=0.113 Sum_probs=20.9
Q ss_pred ccEEEEccCCCCcHHHHHHHHHhhccCCCceeeeC
Q 040450 84 KNLTLYNYPSPSGSLSALFAHLFHFHLNLPCLLLP 118 (211)
Q Consensus 84 p~lVLYHypC~DGf~AAlAAhL~~~~~~~p~~flP 118 (211)
.++|+| |.+|..|+++|+.....+..++..+-
T Consensus 50 ~~vVv~---c~~g~~a~~aa~~L~~~G~~~v~~L~ 81 (145)
T cd01535 50 ERYVLT---CGSSLLARFAAADLAALTVKPVFVLE 81 (145)
T ss_pred CCEEEE---eCCChHHHHHHHHHHHcCCcCeEEec
Confidence 356666 44589999998766655554555543
No 58
>PRK05857 acyl-CoA synthetase; Validated
Probab=27.01 E-value=2.7e+02 Score=25.74 Aligned_cols=26 Identities=19% Similarity=0.126 Sum_probs=20.2
Q ss_pred ccCCccEEEEccCCCCcHHHHHHHHH
Q 040450 80 EERVKNLTLYNYPSPSGSLSALFAHL 105 (211)
Q Consensus 80 ~~~~p~lVLYHypC~DGf~AAlAAhL 105 (211)
......++||=.|+++-..+.||+++
T Consensus 63 ~~~g~~V~i~~~~~~e~~~~~lA~~~ 88 (540)
T PRK05857 63 VSRGSRVLVISDNGPETYLSVLACAK 88 (540)
T ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 33445777777899999999999864
No 59
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=26.10 E-value=3.4e+02 Score=21.68 Aligned_cols=75 Identities=16% Similarity=0.212 Sum_probs=47.6
Q ss_pred CCcHHHHHHHHHhhccCCCceeeeCCcccCCccccccccCCcceEEEEecCCChhHHHHH---hhhCCCcEEEe-ecchh
Q 040450 94 PSGSLSALFAHLFHFHLNLPCLLLPFSSVEPLRVEDLCIEGLERVYLLDFLGPKGFADAL---SRRSSCEVIGF-DHRKS 169 (211)
Q Consensus 94 ~DGf~AAlAAhL~~~~~~~p~~flP~s~~~P~~veDlp~~~~~~VYILDFSfp~~fl~~L---s~ka~~sVIvL-DHHKS 169 (211)
..+..|-++++++. +.+.++.+++.... ....++.-++++.+||-...+.++ +++....||.| |...|
T Consensus 40 ~S~~~A~~~~~~l~-~~g~~~~~~~~~~~-------~~~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s 111 (179)
T TIGR03127 40 RSGLVGKAFAMRLM-HLGFNVYVVGETTT-------PSIKKGDLLIAISGSGETESLVTVAKKAKEIGATVAAITTNPES 111 (179)
T ss_pred HHHHHHHHHHHHHH-hCCCeEEEeCCccc-------CCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 44566666666543 35556666543221 123456788999999977666443 33333567776 88999
Q ss_pred hHhhhcC
Q 040450 170 VLGQITS 176 (211)
Q Consensus 170 A~e~L~~ 176 (211)
-+.++++
T Consensus 112 ~la~~ad 118 (179)
T TIGR03127 112 TLGKLAD 118 (179)
T ss_pred chHHhCC
Confidence 9999998
No 60
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.93 E-value=2e+02 Score=26.35 Aligned_cols=63 Identities=16% Similarity=0.152 Sum_probs=46.6
Q ss_pred cccCCcceEEEEecCCChhHHHHHhhhCCCcEEEeecchhhHhhhcC---------CCCCCeEEEEecCCCcc
Q 040450 130 LCIEGLERVYLLDFLGPKGFADALSRRSSCEVIGFDHRKSVLGQITS---------DHPDKVTFYVDLEKSSS 193 (211)
Q Consensus 130 lp~~~~~~VYILDFSfp~~fl~~Ls~ka~~sVIvLDHHKSA~e~L~~---------~~~~nl~i~FDMeKSGA 193 (211)
+..++++.+.|+---+--.+..++-+++ ++|.++|-|---.--|++ ..++...+++|+.-=|-
T Consensus 40 ~~~~E~~~vli~G~YltG~~~a~~Ls~~-~~vtv~Di~p~~r~~lp~~v~Fr~~~~~~~G~~DlivDlTGlGG 111 (254)
T COG4017 40 LEGEEFKEVLIFGVYLTGNYTAQMLSKA-DKVTVVDIHPFMRGFLPNNVKFRNLLKFIRGEVDLIVDLTGLGG 111 (254)
T ss_pred hcccCcceEEEEEeeehhHHHHHHhccc-ceEEEecCCHHHHhcCCCCccHhhhcCCCCCceeEEEeccccCC
Confidence 3345677888877666677777777778 799999999877777776 13677899999876553
No 61
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=25.46 E-value=1.5e+02 Score=29.65 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=32.7
Q ss_pred cccchhHHHHH-HHhcccCCccEEEEccCCCCc-HHHHHHHHHhhccCCCceeeeC
Q 040450 65 GFRSDAALEAI-SKAGEERVKNLTLYNYPSPSG-SLSALFAHLFHFHLNLPCLLLP 118 (211)
Q Consensus 65 ~~rs~aaleai-~~~~~~~~p~lVLYHypC~DG-f~AAlAAhL~~~~~~~p~~flP 118 (211)
-+.+.+.++.. +....+...++|+| |-.| ..|+.++|.+...+...+.+|-
T Consensus 62 ~lp~~~~l~~~l~~lGI~~d~~VVvY---d~~g~~~A~R~~w~L~~~G~~~V~iLd 114 (610)
T PRK09629 62 LLPDTADLEQLFGELGHNPDAVYVVY---DDEGGGWAGRFIWLLDVIGHSGYHYLD 114 (610)
T ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEE---CCCCCchHHHHHHHHHHcCCCCEEEcC
Confidence 45555555554 55555566689999 6655 6788888876665555565543
No 62
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=25.41 E-value=3.1e+02 Score=25.12 Aligned_cols=23 Identities=13% Similarity=-0.149 Sum_probs=18.7
Q ss_pred CccEEEEccCCCCcHHHHHHHHH
Q 040450 83 VKNLTLYNYPSPSGSLSALFAHL 105 (211)
Q Consensus 83 ~p~lVLYHypC~DGf~AAlAAhL 105 (211)
...++++-.||++-..+.||+|.
T Consensus 45 ~~~V~i~~~n~~e~~~~~~A~~~ 67 (452)
T PRK07445 45 PPKILLAESDPLQFLAAFLAAVA 67 (452)
T ss_pred CCeEEEecCCCHHHHHHHHHHHH
Confidence 44678888999998888888875
No 63
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=24.39 E-value=44 Score=30.97 Aligned_cols=63 Identities=21% Similarity=0.219 Sum_probs=47.1
Q ss_pred CCcceEEEEecCCChhHHHHHhhhCCCcEEEeecchhhHhhhcC-----CCCCCeEEEEecCCCcchhhHHhhhhhhc
Q 040450 133 EGLERVYLLDFLGPKGFADALSRRSSCEVIGFDHRKSVLGQITS-----DHPDKVTFYVDLEKSSSTAAYEYFSSKLV 205 (211)
Q Consensus 133 ~~~~~VYILDFSfp~~fl~~Ls~ka~~sVIvLDHHKSA~e~L~~-----~~~~nl~i~FDMeKSGA~lAwdYF~~kl~ 205 (211)
+++-+|.+|||.+..+.+.++=.. |||+-.-+.. ..+.|+.-|+=+.=++-.+.|||=.=+++
T Consensus 108 ~~~vdvvsLDfvgDn~vIk~vy~l----------~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gki~~e~kaIdiL 175 (275)
T COG1856 108 EELVDVVSLDFVGDNDVIKRVYKL----------PKSVEDYLRSLLLLKENGIRVVPHITIGLDFGKIHGEFKAIDIL 175 (275)
T ss_pred HhcCcEEEEeecCChHHHHHHHcC----------CccHHHHHHHHHHHHHcCceeceeEEEEeccCcccchHHHHHHH
Confidence 456889999999999998666533 5677544444 45777888888888889999998765554
No 64
>PRK07867 acyl-CoA synthetase; Validated
Probab=23.94 E-value=3.5e+02 Score=25.10 Aligned_cols=58 Identities=12% Similarity=-0.067 Sum_probs=37.0
Q ss_pred CccEEEEccCCCCcHHHHHHHHHhhccCCCceeeeCCcccCCccccccccCCcceEEEEecCCChhHHHHHhhhCCCcEE
Q 040450 83 VKNLTLYNYPSPSGSLSALFAHLFHFHLNLPCLLLPFSSVEPLRVEDLCIEGLERVYLLDFLGPKGFADALSRRSSCEVI 162 (211)
Q Consensus 83 ~p~lVLYHypC~DGf~AAlAAhL~~~~~~~p~~flP~s~~~P~~veDlp~~~~~~VYILDFSfp~~fl~~Ls~ka~~sVI 162 (211)
...++|+=.||++-+.+-||+++ . |..+..+|-..+++-+..+.++.+++++
T Consensus 54 ~~~V~i~~~n~~~~~~~~lA~~~-~---------------------------G~~~v~l~~~~~~~~l~~~l~~~~~~~l 105 (529)
T PRK07867 54 PPHVGVLLDNTPEFSLLLGAAAL-S---------------------------GIVPVGLNPTRRGAALARDIAHADCQLV 105 (529)
T ss_pred CCEEEEECCCCHHHHHHHHHHHh-c---------------------------CCEEEEecCCCChHHHHHHHHhCCCeEE
Confidence 34677777789988888888854 1 2333345555666666666666666676
Q ss_pred Eeecch
Q 040450 163 GFDHRK 168 (211)
Q Consensus 163 vLDHHK 168 (211)
+.|.+.
T Consensus 106 i~~~~~ 111 (529)
T PRK07867 106 LTESAH 111 (529)
T ss_pred EECHhH
Confidence 666543
No 65
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=23.75 E-value=1.2e+02 Score=21.75 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=18.7
Q ss_pred CCccEEEEccCCCCcHHHHHHHHHhhcc
Q 040450 82 RVKNLTLYNYPSPSGSLSALFAHLFHFH 109 (211)
Q Consensus 82 ~~p~lVLYHypC~DGf~AAlAAhL~~~~ 109 (211)
+..++++| |..|.-|..++......
T Consensus 60 ~~~~ivv~---C~~G~rs~~aa~~L~~~ 84 (100)
T cd01523 60 DDQEVTVI---CAKEGSSQFVAELLAER 84 (100)
T ss_pred CCCeEEEE---cCCCCcHHHHHHHHHHc
Confidence 34568888 99999998888765543
No 66
>PRK09088 acyl-CoA synthetase; Validated
Probab=23.72 E-value=3.7e+02 Score=24.08 Aligned_cols=57 Identities=12% Similarity=-0.113 Sum_probs=39.5
Q ss_pred CCccEEEEccCCCCcHHHHHHHHHhhccCCCceeeeCCcccCCccccccccCCcceEEEEecCCChhHHHHHhhhCCCcE
Q 040450 82 RVKNLTLYNYPSPSGSLSALFAHLFHFHLNLPCLLLPFSSVEPLRVEDLCIEGLERVYLLDFLGPKGFADALSRRSSCEV 161 (211)
Q Consensus 82 ~~p~lVLYHypC~DGf~AAlAAhL~~~~~~~p~~flP~s~~~P~~veDlp~~~~~~VYILDFSfp~~fl~~Ls~ka~~sV 161 (211)
....+.||=.|+++-+.+-||++. . |..++.+|...+++.+..+.+++++++
T Consensus 46 ~~~~v~i~~~~~~~~~~~~la~~~---~-------------------------G~~~v~~~~~~~~~~~~~~~~~~~~~~ 97 (488)
T PRK09088 46 DGERLAVLARNSVWLVALHFACAR---V-------------------------GAIYVPLNWRLSASELDALLQDAEPRL 97 (488)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHH---c-------------------------CeEEEeeCccCCHHHHHHHHHhCCCCE
Confidence 345788888888887777777753 1 244556677777777777777777777
Q ss_pred EEeec
Q 040450 162 IGFDH 166 (211)
Q Consensus 162 IvLDH 166 (211)
|+-|-
T Consensus 98 ii~~~ 102 (488)
T PRK09088 98 LLGDD 102 (488)
T ss_pred EEEcc
Confidence 76654
No 67
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=23.64 E-value=93 Score=30.08 Aligned_cols=36 Identities=28% Similarity=0.235 Sum_probs=28.9
Q ss_pred hhHHHHHHHhcccCCccEEEEccCCCCcHHHHHHHH
Q 040450 69 DAALEAISKAGEERVKNLTLYNYPSPSGSLSALFAH 104 (211)
Q Consensus 69 ~aaleai~~~~~~~~p~lVLYHypC~DGf~AAlAAh 104 (211)
.-.++++++..++-.|.+||-|+....=+.+|+||.
T Consensus 78 ~~~i~~~~~vl~~~kPD~VlVhGDT~t~lA~alaa~ 113 (383)
T COG0381 78 GNIIEGLSKVLEEEKPDLVLVHGDTNTTLAGALAAF 113 (383)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHH
Confidence 346788888888888999999998777676677774
No 68
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=23.54 E-value=2.9e+02 Score=26.59 Aligned_cols=55 Identities=18% Similarity=0.326 Sum_probs=38.1
Q ss_pred CcceEEEEecCCChhHHH-HHhhhCCCcEE--------------------Eeecchhh-HhhhcCCCCCCeEEEEec
Q 040450 134 GLERVYLLDFLGPKGFAD-ALSRRSSCEVI--------------------GFDHRKSV-LGQITSDHPDKVTFYVDL 188 (211)
Q Consensus 134 ~~~~VYILDFSfp~~fl~-~Ls~ka~~sVI--------------------vLDHHKSA-~e~L~~~~~~nl~i~FDM 188 (211)
.|++|+|===+++-+-+. ||++...|+|| +||||+.- .+.|...||.-+.+.||.
T Consensus 150 ~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~eK~~~l~~~lGfD~~idyk~~d~~~~L~~a~P~GIDvyfeN 226 (340)
T COG2130 150 AGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEELGFDAGIDYKAEDFAQALKEACPKGIDVYFEN 226 (340)
T ss_pred CCCEEEEEecccccchHHHHHHHhhCCeEEEecCCHHHHHHHHHhcCCceeeecCcccHHHHHHHHCCCCeEEEEEc
Confidence 356777766666666554 67666666665 57888763 344555899999999985
No 69
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=22.68 E-value=2.4e+02 Score=21.38 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=19.3
Q ss_pred cCCccEEEEccCCCCcHHHHHHHHHhhcc
Q 040450 81 ERVKNLTLYNYPSPSGSLSALFAHLFHFH 109 (211)
Q Consensus 81 ~~~p~lVLYHypC~DGf~AAlAAhL~~~~ 109 (211)
+..+++++| |..|.-|+.++......
T Consensus 56 ~~~~~vvly---C~~G~rS~~aa~~L~~~ 81 (101)
T TIGR02981 56 DKNDTVKLY---CNAGRQSGMAKDILLDM 81 (101)
T ss_pred CCCCeEEEE---eCCCHHHHHHHHHHHHc
Confidence 445678899 99999888888765543
No 70
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=22.37 E-value=2e+02 Score=21.69 Aligned_cols=24 Identities=21% Similarity=0.045 Sum_probs=17.3
Q ss_pred CccEEEEccCCCCcHHHHHHHHHhhcc
Q 040450 83 VKNLTLYNYPSPSGSLSALFAHLFHFH 109 (211)
Q Consensus 83 ~p~lVLYHypC~DGf~AAlAAhL~~~~ 109 (211)
..++++| |.+|.-|+.++..+...
T Consensus 64 ~~~ivv~---C~~G~rs~~aa~~L~~~ 87 (117)
T cd01522 64 DRPVLLL---CRSGNRSIAAAEAAAQA 87 (117)
T ss_pred CCeEEEE---cCCCccHHHHHHHHHHC
Confidence 3467777 88898888887765443
No 71
>TIGR01733 AA-adenyl-dom amino acid adenylation domain. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
Probab=22.32 E-value=4.6e+02 Score=22.53 Aligned_cols=58 Identities=10% Similarity=-0.082 Sum_probs=34.6
Q ss_pred CCccEEEEccCCCCcHHHHHHHHHhhccCCCceeeeCCcccCCccccccccCCcceEEEEecCCChhHHHHHhhhCCCcE
Q 040450 82 RVKNLTLYNYPSPSGSLSALFAHLFHFHLNLPCLLLPFSSVEPLRVEDLCIEGLERVYLLDFLGPKGFADALSRRSSCEV 161 (211)
Q Consensus 82 ~~p~lVLYHypC~DGf~AAlAAhL~~~~~~~p~~flP~s~~~P~~veDlp~~~~~~VYILDFSfp~~fl~~Ls~ka~~sV 161 (211)
....+.|+-.|+.+-+.+.||++. . |..+..++...+.+.+..+.++.++++
T Consensus 24 ~gd~v~l~~~n~~~~~~~~~a~~~-~---------------------------G~~~v~~~~~~~~~~~~~~l~~~~~~~ 75 (408)
T TIGR01733 24 PGDRVAVLLERSAELVVAILAVLK-A---------------------------GAAYVPLDPAYPAERLAFILEDAGARL 75 (408)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHH-h---------------------------CCEEEEcCCCCCHHHHHHHHHhcCCCE
Confidence 344667776678887777777754 1 233344444555666666666666666
Q ss_pred EEeecc
Q 040450 162 IGFDHR 167 (211)
Q Consensus 162 IvLDHH 167 (211)
++.|..
T Consensus 76 ii~~~~ 81 (408)
T TIGR01733 76 LLTDSA 81 (408)
T ss_pred EEEcCc
Confidence 666554
No 72
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=21.95 E-value=3.8e+02 Score=25.16 Aligned_cols=32 Identities=9% Similarity=-0.117 Sum_probs=22.8
Q ss_pred cceEEEEecCCChhHHHHHhhhCCCcEEEeec
Q 040450 135 LERVYLLDFLGPKGFADALSRRSSCEVIGFDH 166 (211)
Q Consensus 135 ~~~VYILDFSfp~~fl~~Ls~ka~~sVIvLDH 166 (211)
|..+..+|...+.+.+..+.+.+.+++++.|-
T Consensus 111 G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~ 142 (600)
T PRK08279 111 GAVVALLNTQQRGAVLAHSLNLVDAKHLIVGE 142 (600)
T ss_pred CcEEeecCCCCCHHHHHHHHHhcCCCEEEECh
Confidence 45556677777888887777777777777763
No 73
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=21.95 E-value=2.1e+02 Score=20.77 Aligned_cols=68 Identities=15% Similarity=0.153 Sum_probs=34.4
Q ss_pred hhHHHHHHHhc-ccCCccEEEEccC-CCCcHHHHHHHHHhhccCCCceeeeCCcccCCccccccccCCcceEEEE
Q 040450 69 DAALEAISKAG-EERVKNLTLYNYP-SPSGSLSALFAHLFHFHLNLPCLLLPFSSVEPLRVEDLCIEGLERVYLL 141 (211)
Q Consensus 69 ~aaleai~~~~-~~~~p~lVLYHyp-C~DGf~AAlAAhL~~~~~~~p~~flP~s~~~P~~veDlp~~~~~~VYIL 141 (211)
+-++.-+.+.. ......++|-++. =+|+..|+=.| ...+.|+++.+ ....+-..+-+...+...|||+
T Consensus 10 eTs~~va~~~~~~~~~~~v~ia~g~~~~Dalsa~~~a----~~~~~PIll~~-~~l~~~~~~~l~~~~~~~v~ii 79 (92)
T PF04122_consen 10 ETSAKVAKKFYPDNKSDKVYIASGDNFADALSASPLA----AKNNAPILLVN-NSLPSSVKAFLKSLNIKKVYII 79 (92)
T ss_pred HHHHHHHHHhcccCCCCEEEEEeCcchhhhhhhHHHH----HhcCCeEEEEC-CCCCHHHHHHHHHcCCCEEEEE
Confidence 33444444432 3355688888884 45554433222 23566888888 4443222222222345666666
No 74
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=21.50 E-value=1.1e+02 Score=26.95 Aligned_cols=36 Identities=19% Similarity=0.132 Sum_probs=26.1
Q ss_pred hHHHHHHHhcccCCccEEEEccCCCCcHHHHHHHHH
Q 040450 70 AALEAISKAGEERVKNLTLYNYPSPSGSLSALFAHL 105 (211)
Q Consensus 70 aaleai~~~~~~~~p~lVLYHypC~DGf~AAlAAhL 105 (211)
..+..|++.-....|.+|+.|+.-..+..+|++|++
T Consensus 73 ~~~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~ 108 (365)
T TIGR00236 73 NMLEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFY 108 (365)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHH
Confidence 334455555556678999999887788888888865
No 75
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=21.07 E-value=1.8e+02 Score=27.31 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=30.7
Q ss_pred cceEEEEecCCChhHHHHHhhhCCCcEEEeecchhh
Q 040450 135 LERVYLLDFLGPKGFADALSRRSSCEVIGFDHRKSV 170 (211)
Q Consensus 135 ~~~VYILDFSfp~~fl~~Ls~ka~~sVIvLDHHKSA 170 (211)
+.+|.++||-.+..+++.|.+.- +.|+++-+..+.
T Consensus 177 ~~~I~viD~G~k~nivr~L~~~G-~~v~vvp~~~~~ 211 (360)
T PRK12564 177 KYKVVAIDFGVKRNILRELAERG-CRVTVVPATTTA 211 (360)
T ss_pred CCEEEEEeCCcHHHHHHHHHHCC-CEEEEEeCCCCH
Confidence 57999999999999999999887 699999887654
No 76
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated
Probab=20.97 E-value=4.6e+02 Score=23.34 Aligned_cols=26 Identities=4% Similarity=0.029 Sum_probs=19.6
Q ss_pred ccCCccEEEEccCCCCcHHHHHHHHH
Q 040450 80 EERVKNLTLYNYPSPSGSLSALFAHL 105 (211)
Q Consensus 80 ~~~~p~lVLYHypC~DGf~AAlAAhL 105 (211)
......+.||--|+.+-..+.||+++
T Consensus 53 ~~~~~~V~l~~~~~~~~~~~~la~~~ 78 (521)
T PRK06187 53 VKKGDRVAVFDWNSHEYLEAYFAVPK 78 (521)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 34455788888889988888888854
No 77
>PRK04319 acetyl-CoA synthetase; Provisional
Probab=20.95 E-value=3.5e+02 Score=25.19 Aligned_cols=25 Identities=16% Similarity=0.054 Sum_probs=20.2
Q ss_pred cCCccEEEEccCCCCcHHHHHHHHH
Q 040450 81 ERVKNLTLYNYPSPSGSLSALFAHL 105 (211)
Q Consensus 81 ~~~p~lVLYHypC~DGf~AAlAAhL 105 (211)
.....++||=.|+++-..+.||+++
T Consensus 96 ~~gd~V~i~~~n~~~~~~~~la~~~ 120 (570)
T PRK04319 96 EKGDRVFIFMPRIPELYFALLGALK 120 (570)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHH
Confidence 3445789999999999999898865
No 78
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=20.65 E-value=5e+02 Score=22.69 Aligned_cols=57 Identities=11% Similarity=-0.082 Sum_probs=35.1
Q ss_pred CCccEEEEccCCCCcHHHHHHHHHhhccCCCceeeeCCcccCCccccccccCCcceEEEEecCCChhHHHHHhhhCCCcE
Q 040450 82 RVKNLTLYNYPSPSGSLSALFAHLFHFHLNLPCLLLPFSSVEPLRVEDLCIEGLERVYLLDFLGPKGFADALSRRSSCEV 161 (211)
Q Consensus 82 ~~p~lVLYHypC~DGf~AAlAAhL~~~~~~~p~~flP~s~~~P~~veDlp~~~~~~VYILDFSfp~~fl~~Ls~ka~~sV 161 (211)
....++|+=-|+++-..+.||+++ . |..+..+|...|.+.+..+.+++.+++
T Consensus 23 ~gd~v~i~~~~~~~~~~~~la~~~-~---------------------------G~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (436)
T TIGR01923 23 SGSRVALVGQNSIEMVLLLHACLL-L---------------------------GAEIAMLNTRLTENERTNQLEDLDVQL 74 (436)
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHh-c---------------------------CcEEEecCcCCCHHHHHHHHHhcCCCE
Confidence 344677776678877777666643 1 234445566666777766666666666
Q ss_pred EEeec
Q 040450 162 IGFDH 166 (211)
Q Consensus 162 IvLDH 166 (211)
++.|-
T Consensus 75 ~i~~~ 79 (436)
T TIGR01923 75 LLTDS 79 (436)
T ss_pred EEEcC
Confidence 65553
No 79
>PF07925 RdRP_5: Reovirus RNA-dependent RNA polymerase lambda 3; InterPro: IPR012915 The sequences in this family are similar to the reoviral minor core protein lambda 3 (P17378 from SWISSPROT), which functions as a RNA-dependent RNA polymerase within the protein capsid. It is organised into 3 domains. The N- and C-terminal domains create a "cage" which encloses a conserved central catalytic domain within a hollow centre. This catalytic domain is arranged to form finger, palm and thumb subdomains. Unlike other RNA polymerases, such as HIV reverse transcriptase and T7 RNA polymerase, the lambda 3 protein binds template and substrate with only localised rearrangements, and catalytic activity can occur with little structural change. However, the structure of the catalytic complex is similar to that of other polymerase catalytic complexes with known structure []. ; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0032774 RNA biosynthetic process, 0019013 viral nucleocapsid; PDB: 1UON_A 1N1H_A 1MWH_A 1MUK_A 1N38_A 1N35_A.
Probab=20.26 E-value=39 Score=36.86 Aligned_cols=26 Identities=23% Similarity=0.588 Sum_probs=22.0
Q ss_pred CCCCCeEEEEecCCCcchhhHHhhhh
Q 040450 177 DHPDKVTFYVDLEKSSSTAAYEYFSS 202 (211)
Q Consensus 177 ~~~~nl~i~FDMeKSGA~lAwdYF~~ 202 (211)
.+|+|-.|++|..-+-|.|+|+||-.
T Consensus 578 S~PP~~~iNiDIKACDASITy~yFLS 603 (1271)
T PF07925_consen 578 STPPNQVINIDIKACDASITYDYFLS 603 (1271)
T ss_dssp HSTT-EEEEEEEETHHHHS-TTTHHH
T ss_pred cCCCCceEeeeeeccccceeHHHHHH
Confidence 46999999999999999999999964
No 80
>PRK06145 acyl-CoA synthetase; Validated
Probab=20.26 E-value=3.9e+02 Score=23.95 Aligned_cols=59 Identities=8% Similarity=-0.095 Sum_probs=34.9
Q ss_pred CCccEEEEccCCCCcHHHHHHHHHhhccCCCceeeeCCcccCCccccccccCCcceEEEEecCCChhHHHHHhhhCCCcE
Q 040450 82 RVKNLTLYNYPSPSGSLSALFAHLFHFHLNLPCLLLPFSSVEPLRVEDLCIEGLERVYLLDFLGPKGFADALSRRSSCEV 161 (211)
Q Consensus 82 ~~p~lVLYHypC~DGf~AAlAAhL~~~~~~~p~~flP~s~~~P~~veDlp~~~~~~VYILDFSfp~~fl~~Ls~ka~~sV 161 (211)
....++||=.|+++=..+.||+.. .|..+..+|..++++.+..+.+...+++
T Consensus 51 ~~~~v~i~~~~~~~~~~~~la~~~----------------------------~G~~~v~l~~~~~~~~~~~~l~~~~~~~ 102 (497)
T PRK06145 51 QGDVVALLMKNSAAFLELAFAASY----------------------------LGAVFLPINYRLAADEVAYILGDAGAKL 102 (497)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHh----------------------------cCcEEEecccccCHHHHHHHHHhcCCcE
Confidence 344677776677776666666532 1234445566666666666666665666
Q ss_pred EEeecch
Q 040450 162 IGFDHRK 168 (211)
Q Consensus 162 IvLDHHK 168 (211)
++.|...
T Consensus 103 ~i~~~~~ 109 (497)
T PRK06145 103 LLVDEEF 109 (497)
T ss_pred EEEccch
Confidence 6665443
No 81
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=20.04 E-value=2.3e+02 Score=18.95 Aligned_cols=28 Identities=25% Similarity=0.212 Sum_probs=17.6
Q ss_pred ccCCccEEEEccCCCCcHHHHHHHHHhhccC
Q 040450 80 EERVKNLTLYNYPSPSGSLSALFAHLFHFHL 110 (211)
Q Consensus 80 ~~~~p~lVLYHypC~DGf~AAlAAhL~~~~~ 110 (211)
.....++++|-.. |..|.-+++.....+
T Consensus 47 ~~~~~~vv~~c~~---~~~a~~~~~~l~~~G 74 (89)
T cd00158 47 LDKDKPIVVYCRS---GNRSARAAKLLRKAG 74 (89)
T ss_pred cCCCCeEEEEeCC---CchHHHHHHHHHHhC
Confidence 3444578888544 667777776665544
Done!