BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040451
(566 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 166 bits (419), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 160/507 (31%), Positives = 238/507 (46%), Gaps = 55/507 (10%)
Query: 25 TGVTCGHRRQRVTGLDLRQQSVGGVLSPF--VGNLSFPRSINLPNKSFRGEIPHEVS--- 79
+G C +T LDL + S+ G ++ +G+ S + +N+ + + + P +VS
Sbjct: 94 SGFKC---SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGL 148
Query: 80 NLFRLQNLTLTNNYFSGK-----ILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQI 134
L L+ L L+ N SG +L+D C + S NK+ + V++ + L+
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSD--GCGELKHLAISGNKISGD--VDVSRCVNLEF 204
Query: 135 LNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMI 194
L+++ N+ +P +G+ SALQ +D+ GN+L G IS L N++ NQF G I
Sbjct: 205 LDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263
Query: 195 PLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATN-LQ 253
P LPL + L+Y S++ N TG + D LS A + L
Sbjct: 264 P--------------------PLPLKS------LQYLSLAENKFTGEIPDFLSGACDTLT 297
Query: 254 GLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHS 313
GL+++GN F G V F L L L NN + +L TLL L+VLDL
Sbjct: 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF----SGELPMDTLL-KMRGLKVLDLSF 352
Query: 314 NRFGGVLPFSLANLSITMTEIANGSNQISGTI-PDVIANLVN-LNALGVESNQLAGTIPL 371
N F G LP SL NLS ++ + SN SG I P++ N N L L +++N G IP
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412
Query: 372 AIGELKSLQMLFLNENFLRGTIPSSXXXXXXXXXXXXEVNNLQGKIPPSIGNCQNLILLT 431
+ L L L+ N+L GTIPSS +N L+G+IP + + L L
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472
Query: 432 TRKNKLSGTVPRQLLHIITLPVXXXXXXXXXXGHFPAEVGNLKNLVSLDISSNMFSGEIP 491
N L+G +P L + L G P +G L+NL L +S+N FSG IP
Sbjct: 473 LDFNDLTGEIPSGLSNCTNL-NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
Query: 492 TTLGGCTSLEYLGMQDNSFTRSIPSTL 518
LG C SL +L + N F +IP+ +
Sbjct: 532 AELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 164/592 (27%), Positives = 250/592 (42%), Gaps = 91/592 (15%)
Query: 27 VTCGHRRQRVTGLDLRQQS------VGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSN 80
V+ G + + LDL S VG VLS G L + + + G++ +VS
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGEL---KHLAISGNKISGDV--DVSR 198
Query: 81 LFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAEN 140
L+ L +++N FS I L CS + + S NKL + I L++LNI+ N
Sbjct: 199 CVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257
Query: 141 HLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTIS-HVRNLISFNVARNQFSGMIPLIYN 199
G +P L +LQ + + N+ G IP +S L +++ N F G +P +
Sbjct: 258 QFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315
Query: 200 ISSLQYIFIHT-NRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNAT-------- 250
SL + N F G LP+D + + L+ +S N +G L +SL+N +
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375
Query: 251 -------------------NLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNL-GT-- 288
LQ L + N F+GK+ S L L+L N L GT
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435
Query: 289 ---GTANDLDFITLLTN------------CTKLEVLDLHSNRFGGVLPFSLANLSITMTE 333
G+ + L + L N LE L L N G +P L+N + +
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT-NLNW 494
Query: 334 IANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTI 393
I+ +N+++G IP I L NL L + +N +G IP +G+ +SL L LN N GTI
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Query: 394 PSSXXXXXXXXXXXXEVNNLQGKIPPSIGN------CQ---NLI----LLTTRKNKLSGT 440
P++ N + GK I N C NL+ + + + N+LS
Sbjct: 555 PAAMFKQSGKI----AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610
Query: 441 VPRQLLHII----TLP--------VXXXXXXXXXXGHFPAEVGNLKNLVSLDISSNMFSG 488
P + + T P + G+ P E+G++ L L++ N SG
Sbjct: 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670
Query: 489 EIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQ 540
IP +G L L + N IP +S+L +TE+DLS NNLSG IP+
Sbjct: 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 88/327 (26%), Positives = 151/327 (46%), Gaps = 33/327 (10%)
Query: 34 QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNY 93
+ L L + G + +G+LS R + L GEIP E+ + L+ L L N
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477
Query: 94 FSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNL 153
+G+I + LS+C+N+ SNN+L EIP IG L L IL ++ N G +PA +G+
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537
Query: 154 SALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTN-- 211
+L +D+ N G IP+ + I+ N I+ +Y++I +
Sbjct: 538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF--------------IAGKRYVYIKNDGM 583
Query: 212 --RFHGS--LPLDNGVNLPNLRYFS------ISGNNLTGSLQDSLSNATNLQGLEINGNL 261
HG+ L G+ L S I+ G + N ++ L+++ N+
Sbjct: 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 643
Query: 262 FSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLP 321
SG + + L LNLG N++ +++ + L +LDL SN+ G +P
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG------DLRGLNILDLSSNKLDGRIP 697
Query: 322 FSLANLSITMTEIANGSNQISGTIPDV 348
+++ L++ +TEI +N +SG IP++
Sbjct: 698 QAMSALTM-LTEIDLSNNNLSGPIPEM 723
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 164 bits (416), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 160/507 (31%), Positives = 238/507 (46%), Gaps = 55/507 (10%)
Query: 25 TGVTCGHRRQRVTGLDLRQQSVGGVLSPF--VGNLSFPRSINLPNKSFRGEIPHEVS--- 79
+G C +T LDL + S+ G ++ +G+ S + +N+ + + + P +VS
Sbjct: 91 SGFKC---SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGL 145
Query: 80 NLFRLQNLTLTNNYFSGK-----ILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQI 134
L L+ L L+ N SG +L+D C + S NK+ + V++ + L+
Sbjct: 146 KLNSLEVLDLSANSISGANVVGWVLSD--GCGELKHLAISGNKISGD--VDVSRCVNLEF 201
Query: 135 LNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMI 194
L+++ N+ +P +G+ SALQ +D+ GN+L G IS L N++ NQF G I
Sbjct: 202 LDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 260
Query: 195 PLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATN-LQ 253
P LPL + L+Y S++ N TG + D LS A + L
Sbjct: 261 P--------------------PLPLKS------LQYLSLAENKFTGEIPDFLSGACDTLT 294
Query: 254 GLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHS 313
GL+++GN F G V F L L L NN + +L TLL L+VLDL
Sbjct: 295 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF----SGELPMDTLL-KMRGLKVLDLSF 349
Query: 314 NRFGGVLPFSLANLSITMTEIANGSNQISGTI-PDVIANLVN-LNALGVESNQLAGTIPL 371
N F G LP SL NLS ++ + SN SG I P++ N N L L +++N G IP
Sbjct: 350 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 409
Query: 372 AIGELKSLQMLFLNENFLRGTIPSSXXXXXXXXXXXXEVNNLQGKIPPSIGNCQNLILLT 431
+ L L L+ N+L GTIPSS +N L+G+IP + + L L
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 469
Query: 432 TRKNKLSGTVPRQLLHIITLPVXXXXXXXXXXGHFPAEVGNLKNLVSLDISSNMFSGEIP 491
N L+G +P L + L G P +G L+NL L +S+N FSG IP
Sbjct: 470 LDFNDLTGEIPSGLSNCTNL-NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 528
Query: 492 TTLGGCTSLEYLGMQDNSFTRSIPSTL 518
LG C SL +L + N F +IP+ +
Sbjct: 529 AELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 164/592 (27%), Positives = 251/592 (42%), Gaps = 91/592 (15%)
Query: 27 VTCGHRRQRVTGLDLRQQS------VGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSN 80
V+ G + + LDL S VG VLS G L + + + G++ +VS
Sbjct: 141 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGEL---KHLAISGNKISGDV--DVSR 195
Query: 81 LFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAEN 140
L+ L +++N FS I L CS + + S NKL + I L++LNI+ N
Sbjct: 196 CVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 254
Query: 141 HLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTIS-HVRNLISFNVARNQFSGMIPLIYN 199
G +P L +LQ + + N+ G IP +S L +++ N F G +P +
Sbjct: 255 QFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 312
Query: 200 ISSLQYIFIHT-NRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNAT-------- 250
SL + N F G LP+D + + L+ +S N +G L +SL+N +
Sbjct: 313 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 372
Query: 251 -------------------NLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNL-GT-- 288
LQ L + N F+GK+ S L L+L N L GT
Sbjct: 373 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 432
Query: 289 ---GTANDLDFITLLTNCTK------------LEVLDLHSNRFGGVLPFSLANLSITMTE 333
G+ + L + L N + LE L L N G +P L+N + +
Sbjct: 433 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT-NLNW 491
Query: 334 IANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTI 393
I+ +N+++G IP I L NL L + +N +G IP +G+ +SL L LN N GTI
Sbjct: 492 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 551
Query: 394 PSSXXXXXXXXXXXXEVNNLQGKIPPSIGN------CQ---NLI----LLTTRKNKLSGT 440
P++ N + GK I N C NL+ + + + N+LS
Sbjct: 552 PAAMFKQSGKI----AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 607
Query: 441 VPRQLLHII----TLP--------VXXXXXXXXXXGHFPAEVGNLKNLVSLDISSNMFSG 488
P + + T P + G+ P E+G++ L L++ N SG
Sbjct: 608 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 667
Query: 489 EIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQ 540
IP +G L L + N IP +S+L +TE+DLS NNLSG IP+
Sbjct: 668 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 98.6 bits (244), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 88/326 (26%), Positives = 151/326 (46%), Gaps = 33/326 (10%)
Query: 35 RVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYF 94
+ L L + G + +G+LS R + L GEIP E+ + L+ L L N
Sbjct: 416 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 475
Query: 95 SGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLS 154
+G+I + LS+C+N+ SNN+L EIP IG L L IL ++ N G +PA +G+
Sbjct: 476 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 535
Query: 155 ALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTN--- 211
+L +D+ N G IP+ + I+ N I+ +Y++I +
Sbjct: 536 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANF--------------IAGKRYVYIKNDGMK 581
Query: 212 -RFHGS--LPLDNGVNLPNLRYFS------ISGNNLTGSLQDSLSNATNLQGLEINGNLF 262
HG+ L G+ L S I+ G + N ++ L+++ N+
Sbjct: 582 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 641
Query: 263 SGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPF 322
SG + + L LNLG N++ +++ + L +LDL SN+ G +P
Sbjct: 642 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG------DLRGLNILDLSSNKLDGRIPQ 695
Query: 323 SLANLSITMTEIANGSNQISGTIPDV 348
+++ L++ +TEI +N +SG IP++
Sbjct: 696 AMSALTM-LTEIDLSNNNLSGPIPEM 720
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 110/227 (48%), Gaps = 11/227 (4%)
Query: 122 IPVEIGNLLMLQILNIAE-NHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNL 180
IP + NL L L I N+L G +P +I L+ L + + + G IP +S ++ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 181 ISFNVARNQFSGMIPL-IYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLT 239
++ + + N SG +P I ++ +L I NR G++P G +IS N LT
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 240 GSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITL 299
G + + +N NL ++++ N+ G S+ F +N +++L +N+L A DL + L
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL----AFDLGKVGL 242
Query: 300 LTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIP 346
N L LDL +NR G LP L L + + N + G IP
Sbjct: 243 SKN---LNGLDLRNNRIYGTLPQGLTQLKF-LHSLNVSFNNLCGEIP 285
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 103/222 (46%), Gaps = 4/222 (1%)
Query: 320 LPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSL 379
+P SLANL G N + G IP IA L L+ L + ++G IP + ++K+L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 380 QMLFLNENFLRGTIPSSXXXXXXXXXXXXEVNNLQGKIPPSIGNCQNLIL-LTTRKNKLS 438
L + N L GT+P S + N + G IP S G+ L +T +N+L+
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 439 GTVPRQLLHIITLPVXXXXXXXXXXGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCT 498
G +P ++ V G G+ KN + ++ N + ++ +G
Sbjct: 188 GKIPPTFANLNLAFV--DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSK 244
Query: 499 SLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQ 540
+L L +++N ++P L+ LK + L++S NNL G IPQ
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 124/292 (42%), Gaps = 31/292 (10%)
Query: 1 MKSQLQDPLGVTSSWNNSINLCQ--WTGVTCGHRRQ--RVTGLDLRQQSVGGVLSPFVGN 56
+K L +P + SSW + + C W GV C Q RV LDL
Sbjct: 14 IKKDLGNPTTL-SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLS-------------- 58
Query: 57 LSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTN-NYFSGKILTDLSHCSNVMKFEASN 115
+NLP IP ++NL L L + N G I ++ + + ++
Sbjct: 59 -----GLNLPKPY---PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 116 NKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTIS 175
+ IP + + L L+ + N L G LP SI +L L I GNR+ G IP +
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170
Query: 176 HVRNLI-SFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSIS 234
L S ++RN+ +G IP + +L ++ + N G + G + N + ++
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD-KNTQKIHLA 229
Query: 235 GNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNL 286
N+L L + + NL GL++ N G + ++L+ L LN+ NNL
Sbjct: 230 KNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 105/223 (47%), Gaps = 27/223 (12%)
Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGS 216
Q ++ +RLG + + ++ NL N + NQ + + PL N++ L I ++ N+
Sbjct: 42 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPL-KNLTKLVDILMNNNQIADI 100
Query: 217 LPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNL 276
PL N NL L F N +T D L N TNL LE++ N S ++ S L +L
Sbjct: 101 TPLANLTNLTGLTLF---NNQITDI--DPLKNLTNLNRLELSSNTISDISAL--SGLTSL 153
Query: 277 SRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIAN 336
+LN G N + + L N T LE LD+ SN+ + LA L+ + IA
Sbjct: 154 QQLNFG---------NQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIA- 201
Query: 337 GSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSL 379
+NQIS P + L NL+ L + NQL IG L SL
Sbjct: 202 TNNQISDITP--LGILTNLDELSLNGNQLKD-----IGTLASL 237
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 166/349 (47%), Gaps = 55/349 (15%)
Query: 44 QSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLS 103
+S+ GV ++ NL+ IN N P + NL +L ++ + NN + +T L+
Sbjct: 54 KSIDGV--EYLNNLT---QINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLA 104
Query: 104 HCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRG 163
+ +N+ NN++ P++ NL L L ++ N + +++ L++LQ+++ G
Sbjct: 105 NLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISD--ISALSGLTSLQQLNF-G 159
Query: 164 NRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGV 223
N++ P ++++ L +++ N+ S I ++ +++L+ + N+ PL G+
Sbjct: 160 NQVTDLKP--LANLTTLERLDISSNKVSD-ISVLAKLTNLESLIATNNQISDITPL--GI 214
Query: 224 NLPNLRYFSISGNNLTGSLQD--SLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNL 281
L NL S++GN L+D +L++ TNL L++ N S + S L L+ L L
Sbjct: 215 -LTNLDELSLNGN----QLKDIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKL 267
Query: 282 GENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFS-LANLSITMTEIANGSNQ 340
G AN + I+ L T L L+L+ N+ + P S L NL+ +T N +
Sbjct: 268 G--------ANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY-LTLYFNNISD 318
Query: 341 IS---------------GTIPDV--IANLVNLNALGVESNQLAGTIPLA 372
IS + DV +ANL N+N L NQ++ PLA
Sbjct: 319 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLA 367
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 103/246 (41%), Gaps = 46/246 (18%)
Query: 294 LDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLV 353
+D + L N T++ + +N+ + P L NL+ + +I +NQI+ P +ANL
Sbjct: 56 IDGVEYLNNLTQI---NFSNNQLTDITP--LKNLT-KLVDILMNNNQIADITP--LANLT 107
Query: 354 NLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSXXXXXXXXXXXXEVNNL 413
NL L + +NQ+ PL L +L L L+ N + S +V +L
Sbjct: 108 NLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDL 165
Query: 414 QGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVXXXXXXXXXXGHFPAEVGNL 473
+ + N L L NK+S + + L
Sbjct: 166 K-----PLANLTTLERLDISSNKVSDI---------------------------SVLAKL 193
Query: 474 KNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNN 533
NL SL ++N S P LG T+L+ L + N + I TL+SL ++T+LDL+ N
Sbjct: 194 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQ 249
Query: 534 LSGHIP 539
+S P
Sbjct: 250 ISNLAP 255
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 105/223 (47%), Gaps = 27/223 (12%)
Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGS 216
Q ++ +RLG + + ++ NL N + NQ + + PL N++ L I ++ N+
Sbjct: 42 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPL-KNLTKLVDILMNNNQIADI 100
Query: 217 LPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNL 276
PL N NL L F N +T D L N TNL LE++ N S ++ S L +L
Sbjct: 101 TPLANLTNLTGLTLF---NNQITDI--DPLKNLTNLNRLELSSNTISDISAL--SGLTSL 153
Query: 277 SRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIAN 336
+LN G N + + L N T LE LD+ SN+ + LA L+ + IA
Sbjct: 154 QQLNFG---------NQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIA- 201
Query: 337 GSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSL 379
+NQIS P + L NL+ L + NQL IG L SL
Sbjct: 202 TNNQISDITP--LGILTNLDELSLNGNQLKD-----IGTLASL 237
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 166/349 (47%), Gaps = 55/349 (15%)
Query: 44 QSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLS 103
+S+ GV ++ NL+ IN N P + NL +L ++ + NN + +T L+
Sbjct: 54 KSIDGV--EYLNNLT---QINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLA 104
Query: 104 HCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRG 163
+ +N+ NN++ P++ NL L L ++ N + +++ L++LQ+++ G
Sbjct: 105 NLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISD--ISALSGLTSLQQLNF-G 159
Query: 164 NRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGV 223
N++ P ++++ L +++ N+ S I ++ +++L+ + N+ PL G+
Sbjct: 160 NQVTDLKP--LANLTTLERLDISSNKVSD-ISVLAKLTNLESLIATNNQISDITPL--GI 214
Query: 224 NLPNLRYFSISGNNLTGSLQD--SLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNL 281
L NL S++GN L+D +L++ TNL L++ N S + S L L+ L L
Sbjct: 215 -LTNLDELSLNGN----QLKDIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKL 267
Query: 282 GENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFS-LANLSITMTEIANGSNQ 340
G AN + I+ L T L L+L+ N+ + P S L NL+ +T N +
Sbjct: 268 G--------ANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY-LTLYFNNISD 318
Query: 341 IS---------------GTIPDV--IANLVNLNALGVESNQLAGTIPLA 372
IS + DV +ANL N+N L NQ++ PLA
Sbjct: 319 ISPVSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTPLA 367
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 103/246 (41%), Gaps = 46/246 (18%)
Query: 294 LDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLV 353
+D + L N T++ + +N+ + P L NL+ + +I +NQI+ P +ANL
Sbjct: 56 IDGVEYLNNLTQI---NFSNNQLTDITP--LKNLT-KLVDILMNNNQIADITP--LANLT 107
Query: 354 NLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSXXXXXXXXXXXXEVNNL 413
NL L + +NQ+ PL L +L L L+ N + S +V +L
Sbjct: 108 NLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDL 165
Query: 414 QGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVXXXXXXXXXXGHFPAEVGNL 473
+ + N L L NK+S + + L
Sbjct: 166 K-----PLANLTTLERLDISSNKVSDI---------------------------SVLAKL 193
Query: 474 KNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNN 533
NL SL ++N S P LG T+L+ L + N + I TL+SL ++T+LDL+ N
Sbjct: 194 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQ 249
Query: 534 LSGHIP 539
+S P
Sbjct: 250 ISNLAP 255
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 105/223 (47%), Gaps = 26/223 (11%)
Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGS 216
Q ++ +RLG + + ++ NL N + NQ + + PL N++ L I ++ N+
Sbjct: 42 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPL-KNLTKLVDILMNNNQIADI 100
Query: 217 LPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNL 276
PL N NL L F N +T D L N TNL LE++ N S ++ S L +L
Sbjct: 101 TPLANLTNLTGLTLF---NNQITDI--DPLKNLTNLNRLELSSNTISDISAL--SGLTSL 153
Query: 277 SRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIAN 336
+LN N + DL L N T LE LD+ SN+ + LA L+ + IA
Sbjct: 154 QQLNFSSNQVT-----DLKP---LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIA- 202
Query: 337 GSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSL 379
+NQIS P + L NL+ L + NQL IG L SL
Sbjct: 203 TNNQISDITP--LGILTNLDELSLNGNQLKD-----IGTLASL 238
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 89/315 (28%), Positives = 139/315 (44%), Gaps = 69/315 (21%)
Query: 78 VSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNI 137
++NL L LTL NN + + L + +N+ + E S+N + ++I G L LQ LN
Sbjct: 103 LANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTI-SDISALSG-LTSLQQLNF 158
Query: 138 AENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLI 197
+ N + P + NL+ L+ +D+ N++ S ++ + NL S NQ S + PL
Sbjct: 159 SSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPL- 213
Query: 198 YNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQD--SLSNATNLQGL 255
G+ L NL S++GN L+D +L++ TNL L
Sbjct: 214 ------------------------GI-LTNLDELSLNGN----QLKDIGTLASLTNLTDL 244
Query: 256 EINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNR 315
++ N S + S L L+ L LG AN + I+ L T L L+L+ N+
Sbjct: 245 DLANNQISNLAPL--SGLTKLTELKLG--------ANQISNISPLAGLTALTNLELNENQ 294
Query: 316 FGGVLPFS-LANLSITMTEIANGSNQIS---------------GTIPDV--IANLVNLNA 357
+ P S L NL+ +T N + IS + DV +ANL N+N
Sbjct: 295 LEDISPISNLKNLTY-LTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINW 353
Query: 358 LGVESNQLAGTIPLA 372
L NQ++ PLA
Sbjct: 354 LSAGHNQISDLTPLA 368
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 109/267 (40%), Gaps = 72/267 (26%)
Query: 273 LQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMT 332
L NL+++N N L IT L N TKL + +++N+ + P LANL+ +T
Sbjct: 62 LNNLTQINFSNNQLTD--------ITPLKNLTKLVDILMNNNQIADITP--LANLT-NLT 110
Query: 333 EIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGT 392
+ +NQI+ P + NL NLN L + SN ++ A+ L SLQ L + N +
Sbjct: 111 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTDL 166
Query: 393 IPSSXXXXXXXXXXXXEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLP 452
P + N L L NK+S
Sbjct: 167 KP--------------------------LANLTTLERLDISSNKVSDI------------ 188
Query: 453 VXXXXXXXXXXGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTR 512
+ + L NL SL ++N S P LG T+L+ L + N +
Sbjct: 189 ---------------SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-K 230
Query: 513 SIPSTLSSLKSITELDLSRNNLSGHIP 539
I TL+SL ++T+LDL+ N +S P
Sbjct: 231 DI-GTLASLTNLTDLDLANNQISNLAP 256
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 106/223 (47%), Gaps = 27/223 (12%)
Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGS 216
Q ++ +RLG + + ++ NL N + NQ + + PL N++ L I ++ N+
Sbjct: 46 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPL-KNLTKLVDILMNNNQIADI 104
Query: 217 LPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNL 276
PL N NL L F+ N +T D L N TNL LE++ N S ++ S L +L
Sbjct: 105 TPLANLTNLTGLTLFN---NQITDI--DPLKNLTNLNRLELSSNTISDISAL--SGLTSL 157
Query: 277 SRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIAN 336
+L+ G N + + L N T LE LD+ SN+ + LA L+ + IA
Sbjct: 158 QQLSFG---------NQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIAT 206
Query: 337 GSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSL 379
+NQIS P + L NL+ L + NQL IG L SL
Sbjct: 207 -NNQISDITP--LGILTNLDELSLNGNQLKD-----IGTLASL 241
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 165/349 (47%), Gaps = 55/349 (15%)
Query: 44 QSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLS 103
+S+ GV ++ NL+ IN N P + NL +L ++ + NN + +T L+
Sbjct: 58 KSIDGV--EYLNNLT---QINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLA 108
Query: 104 HCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRG 163
+ +N+ NN++ P++ NL L L ++ N + +++ L++LQ++ G
Sbjct: 109 NLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-G 163
Query: 164 NRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGV 223
N++ P ++++ L +++ N+ S I ++ +++L+ + N+ PL G+
Sbjct: 164 NQVTDLKP--LANLTTLERLDISSNKVSD-ISVLAKLTNLESLIATNNQISDITPL--GI 218
Query: 224 NLPNLRYFSISGNNLTGSLQD--SLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNL 281
L NL S++GN L+D +L++ TNL L++ N S + S L L+ L L
Sbjct: 219 -LTNLDELSLNGN----QLKDIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKL 271
Query: 282 GENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFS-LANLSITMTEIANGSNQ 340
G AN + I+ L T L L+L+ N+ + P S L NL+ +T N +
Sbjct: 272 G--------ANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY-LTLYFNNISD 322
Query: 341 IS---------------GTIPDV--IANLVNLNALGVESNQLAGTIPLA 372
IS + DV +ANL N+N L NQ++ PLA
Sbjct: 323 ISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLA 371
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 103/246 (41%), Gaps = 46/246 (18%)
Query: 294 LDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLV 353
+D + L N T++ + +N+ + P L NL+ + +I +NQI+ P +ANL
Sbjct: 60 IDGVEYLNNLTQI---NFSNNQLTDITP--LKNLT-KLVDILMNNNQIADITP--LANLT 111
Query: 354 NLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSXXXXXXXXXXXXEVNNL 413
NL L + +NQ+ PL L +L L L+ N + S +V +L
Sbjct: 112 NLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL 169
Query: 414 QGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVXXXXXXXXXXGHFPAEVGNL 473
+ + N L L NK+S + + L
Sbjct: 170 K-----PLANLTTLERLDISSNKVSDI---------------------------SVLAKL 197
Query: 474 KNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNN 533
NL SL ++N S P LG T+L+ L + N + I TL+SL ++T+LDL+ N
Sbjct: 198 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQ 253
Query: 534 LSGHIP 539
+S P
Sbjct: 254 ISNLAP 259
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 106/223 (47%), Gaps = 27/223 (12%)
Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGS 216
Q ++ +RLG + + ++ NL N + NQ + + PL N++ L I ++ N+
Sbjct: 47 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPL-KNLTKLVDILMNNNQIADI 105
Query: 217 LPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNL 276
PL N NL L F+ N +T D L N TNL LE++ N S ++ S L +L
Sbjct: 106 TPLANLTNLTGLTLFN---NQITDI--DPLKNLTNLNRLELSSNTISDISAL--SGLTSL 158
Query: 277 SRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIAN 336
+L+ G N + + L N T LE LD+ SN+ + LA L+ + IA
Sbjct: 159 QQLSFG---------NQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIAT 207
Query: 337 GSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSL 379
+NQIS P + L NL+ L + NQL IG L SL
Sbjct: 208 -NNQISDITP--LGILTNLDELSLNGNQLKD-----IGTLASL 242
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 165/349 (47%), Gaps = 55/349 (15%)
Query: 44 QSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLS 103
+S+ GV ++ NL+ IN N P + NL +L ++ + NN + +T L+
Sbjct: 59 KSIDGV--EYLNNLT---QINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLA 109
Query: 104 HCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRG 163
+ +N+ NN++ P++ NL L L ++ N + +++ L++LQ++ G
Sbjct: 110 NLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-G 164
Query: 164 NRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGV 223
N++ P ++++ L +++ N+ S I ++ +++L+ + N+ PL G+
Sbjct: 165 NQVTDLKP--LANLTTLERLDISSNKVSD-ISVLAKLTNLESLIATNNQISDITPL--GI 219
Query: 224 NLPNLRYFSISGNNLTGSLQD--SLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNL 281
L NL S++GN L+D +L++ TNL L++ N S + S L L+ L L
Sbjct: 220 -LTNLDELSLNGN----QLKDIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKL 272
Query: 282 GENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFS-LANLSITMTEIANGSNQ 340
G AN + I+ L T L L+L+ N+ + P S L NL+ +T N +
Sbjct: 273 G--------ANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY-LTLYFNNISD 323
Query: 341 IS---------------GTIPDV--IANLVNLNALGVESNQLAGTIPLA 372
IS + DV +ANL N+N L NQ++ PLA
Sbjct: 324 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLA 372
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 103/246 (41%), Gaps = 46/246 (18%)
Query: 294 LDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLV 353
+D + L N T++ + +N+ + P L NL+ + +I +NQI+ P +ANL
Sbjct: 61 IDGVEYLNNLTQI---NFSNNQLTDITP--LKNLT-KLVDILMNNNQIADITP--LANLT 112
Query: 354 NLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSXXXXXXXXXXXXEVNNL 413
NL L + +NQ+ PL L +L L L+ N + S +V +L
Sbjct: 113 NLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL 170
Query: 414 QGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVXXXXXXXXXXGHFPAEVGNL 473
+ + N L L NK+S + + L
Sbjct: 171 K-----PLANLTTLERLDISSNKVSDI---------------------------SVLAKL 198
Query: 474 KNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNN 533
NL SL ++N S P LG T+L+ L + N + I TL+SL ++T+LDL+ N
Sbjct: 199 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQ 254
Query: 534 LSGHIP 539
+S P
Sbjct: 255 ISNLAP 260
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 104/224 (46%), Gaps = 28/224 (12%)
Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGS 216
Q ++ +RLG + + ++ NL N + NQ + + PL N++ L I ++ N+
Sbjct: 42 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPL-KNLTKLVDILMNNNQIADI 100
Query: 217 LPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSIN-FSRLQN 275
PL N NL L F N +T D L N TNL LE++ N S +++ + LQ
Sbjct: 101 TPLANLTNLTGLTLF---NNQITDI--DPLKNLTNLNRLELSSNTISDISALSGLTSLQQ 155
Query: 276 LSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIA 335
LS ++N + + L N T LE LD+ SN+ + LA L+ + IA
Sbjct: 156 LSF-----------SSNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIA 202
Query: 336 NGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSL 379
NQIS P + L NL+ L + NQL IG L SL
Sbjct: 203 TN-NQISDITP--LGILTNLDELSLNGNQLKD-----IGTLASL 238
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 91/349 (26%), Positives = 164/349 (46%), Gaps = 54/349 (15%)
Query: 44 QSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLS 103
+S+ GV ++ NL+ IN N P + NL +L ++ + NN + +T L+
Sbjct: 54 KSIDGV--EYLNNLT---QINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLA 104
Query: 104 HCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRG 163
+ +N+ NN++ P++ NL L L ++ N + +++ L++LQ++
Sbjct: 105 NLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSS 160
Query: 164 NRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGV 223
N++ P ++++ L +++ N+ S I ++ +++L+ + N+ PL G+
Sbjct: 161 NQVTDLKP--LANLTTLERLDISSNKVSD-ISVLAKLTNLESLIATNNQISDITPL--GI 215
Query: 224 NLPNLRYFSISGNNLTGSLQD--SLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNL 281
L NL S++GN L+D +L++ TNL L++ N S + S L L+ L L
Sbjct: 216 -LTNLDELSLNGN----QLKDIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKL 268
Query: 282 GENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFS-LANLSITMTEIANGSNQ 340
G AN + I+ L T L L+L+ N+ + P S L NL+ +T N +
Sbjct: 269 G--------ANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY-LTLYFNNISD 319
Query: 341 IS---------------GTIPDV--IANLVNLNALGVESNQLAGTIPLA 372
IS + DV +ANL N+N L NQ++ PLA
Sbjct: 320 ISPVSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTPLA 368
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 109/267 (40%), Gaps = 72/267 (26%)
Query: 273 LQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMT 332
L NL+++N N L IT L N TKL + +++N+ + P LANL+ +T
Sbjct: 62 LNNLTQINFSNNQLTD--------ITPLKNLTKLVDILMNNNQIADITP--LANLT-NLT 110
Query: 333 EIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGT 392
+ +NQI+ P + NL NLN L + SN ++ A+ L SLQ L + N +
Sbjct: 111 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFSSNQVTDL 166
Query: 393 IPSSXXXXXXXXXXXXEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLP 452
P + N L L NK+S
Sbjct: 167 KP--------------------------LANLTTLERLDISSNKVSDI------------ 188
Query: 453 VXXXXXXXXXXGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTR 512
+ + L NL SL ++N S P LG T+L+ L + N +
Sbjct: 189 ---------------SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-K 230
Query: 513 SIPSTLSSLKSITELDLSRNNLSGHIP 539
I TL+SL ++T+LDL+ N +S P
Sbjct: 231 DI-GTLASLTNLTDLDLANNQISNLAP 256
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 105/224 (46%), Gaps = 28/224 (12%)
Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGS 216
Q ++ +RLG + + ++ NL N + NQ + + PL N++ L I ++ N+
Sbjct: 42 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPL-KNLTKLVDILMNNNQIADI 100
Query: 217 LPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSIN-FSRLQN 275
PL N NL L F N +T D L N TNL LE++ N S +++ + LQ
Sbjct: 101 TPLANLTNLTGLTLF---NNQITDI--DPLKNLTNLNRLELSSNTISDISALSGLTSLQQ 155
Query: 276 LSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIA 335
LS ++N + + L N T LE LD+ SN+ + LA L+ + IA
Sbjct: 156 LSF-----------SSNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIA 202
Query: 336 NGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSL 379
+NQIS P + L NL+ L + NQL IG L SL
Sbjct: 203 -TNNQISDITP--LGILTNLDELSLNGNQLKD-----IGTLASL 238
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 91/349 (26%), Positives = 164/349 (46%), Gaps = 54/349 (15%)
Query: 44 QSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLS 103
+S+ GV ++ NL+ IN N P + NL +L ++ + NN + +T L+
Sbjct: 54 KSIDGV--EYLNNLT---QINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLA 104
Query: 104 HCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRG 163
+ +N+ NN++ P++ NL L L ++ N + +++ L++LQ++
Sbjct: 105 NLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSS 160
Query: 164 NRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGV 223
N++ P ++++ L +++ N+ S I ++ +++L+ + N+ PL G+
Sbjct: 161 NQVTDLKP--LANLTTLERLDISSNKVSD-ISVLAKLTNLESLIATNNQISDITPL--GI 215
Query: 224 NLPNLRYFSISGNNLTGSLQD--SLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNL 281
L NL S++GN L+D +L++ TNL L++ N S + S L L+ L L
Sbjct: 216 -LTNLDELSLNGN----QLKDIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKL 268
Query: 282 GENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFS-LANLSITMTEIANGSNQ 340
G AN + I+ L T L L+L+ N+ + P S L NL+ +T N +
Sbjct: 269 G--------ANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY-LTLYFNNISD 319
Query: 341 IS---------------GTIPDV--IANLVNLNALGVESNQLAGTIPLA 372
IS + DV +ANL N+N L NQ++ PLA
Sbjct: 320 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLA 368
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 109/267 (40%), Gaps = 72/267 (26%)
Query: 273 LQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMT 332
L NL+++N N L IT L N TKL + +++N+ + P LANL+ +T
Sbjct: 62 LNNLTQINFSNNQLTD--------ITPLKNLTKLVDILMNNNQIADITP--LANLT-NLT 110
Query: 333 EIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGT 392
+ +NQI+ P + NL NLN L + SN ++ A+ L SLQ L + N +
Sbjct: 111 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFSSNQVTDL 166
Query: 393 IPSSXXXXXXXXXXXXEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLP 452
P + N L L NK+S
Sbjct: 167 KP--------------------------LANLTTLERLDISSNKVSDI------------ 188
Query: 453 VXXXXXXXXXXGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTR 512
+ + L NL SL ++N S P LG T+L+ L + N +
Sbjct: 189 ---------------SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-K 230
Query: 513 SIPSTLSSLKSITELDLSRNNLSGHIP 539
I TL+SL ++T+LDL+ N +S P
Sbjct: 231 DI-GTLASLTNLTDLDLANNQISNLAP 256
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 93/206 (45%), Gaps = 24/206 (11%)
Query: 51 SPFVGNLSFPRS-----INLPNKSFRGEIPHEVSNLFRLQNLTLT----NNYFSGKILTD 101
+PF+ + P +N F + S L RLQ L L N+F ++T
Sbjct: 341 TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT- 399
Query: 102 LSHCSNVMKFEASNNKLEAEIPVEIGNLLM-LQILNIAENHLKGQLPASIGNLSALQEID 160
+ S++ + S N L + + +LN++ N L G + + ++ +D
Sbjct: 400 -KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLD 456
Query: 161 VRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYN-ISSLQYIFIHTNRFHGSLPL 219
+ NR+ IP ++H++ L NVA NQ + +++ ++SLQYI++H N P
Sbjct: 457 LHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN------PW 509
Query: 220 DNGVNLPNLRYFSISGNNLTGSLQDS 245
D P +RY S N +G +++S
Sbjct: 510 D--CTCPGIRYLSEWINKHSGVVRNS 533
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 81/202 (40%), Gaps = 21/202 (10%)
Query: 230 YFSISGNNLTGSLQDSLSNATNLQGL--EING--NLFSGKVSINFSRLQNLSRLNLGENN 285
+ + + N T S+ S LQ L + NG N F KV++ + +L L++ N+
Sbjct: 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF--KVALMTKNMSSLETLDVSLNS 414
Query: 286 LGTGTANDLDFITLLTNCTKLE---VLDLHSNRFGGVLPFSLANLSITMTEIANGSNQIS 342
L + + C E VL+L SN G + F + + ++ N N+I
Sbjct: 415 LNSHAYD--------RTCAWAESILVLNLSSNMLTGSV-FRCLPPKVKVLDLHN--NRI- 462
Query: 343 GTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSXXXXXX 402
+IP + +L L L V SNQL L SLQ ++L++N T P
Sbjct: 463 MSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEW 522
Query: 403 XXXXXXEVNNLQGKIPPSIGNC 424
V N G + P C
Sbjct: 523 INKHSGVVRNSAGSVAPDSAKC 544
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 467 PAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIP 515
P +V +L+ L L+++SN TSL+Y+ + DN + + P
Sbjct: 466 PKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 4/181 (2%)
Query: 106 SNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASI-GNLSALQEIDVRGN 164
++ K + +NKL + L L++L + +N L+ LPA I L L+ + V N
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95
Query: 165 RLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYN-ISSLQYIFIHTNRFHGSLPLDNGV 223
+L + NL + RNQ + P +++ ++ L Y+ + N SLP
Sbjct: 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFD 154
Query: 224 NLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGE 283
L +L+ + N L + + T L+ L+++ N F L+ L L L E
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214
Query: 284 N 284
N
Sbjct: 215 N 215
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 70/180 (38%), Gaps = 8/180 (4%)
Query: 208 IHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVS 267
+ +N+ SLP L LR ++ N L NL+ L + N
Sbjct: 44 LQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI 102
Query: 268 INFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANL 327
F +L NL+ L L N L + D +T KL L L N LP + +
Sbjct: 103 GVFDQLVNLAELRLDRNQLKSLPPRVFDSLT------KLTYLSLGYNELQS-LPKGVFDK 155
Query: 328 SITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNEN 387
++ E+ +NQ+ L L L +++NQL A L+ L+ML L EN
Sbjct: 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 7/141 (4%)
Query: 250 TNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVL 309
+ + L++ N S S F RL L L L +N L T A + LE L
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG------IFKELKNLETL 90
Query: 310 DLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTI 369
+ N+ LP + + + + E+ NQ+ P V +L L L + N+L
Sbjct: 91 WVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP 149
Query: 370 PLAIGELKSLQMLFLNENFLR 390
+L SL+ L L N L+
Sbjct: 150 KGVFDKLTSLKELRLYNNQLK 170
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 90/372 (24%), Positives = 145/372 (38%), Gaps = 80/372 (21%)
Query: 25 TGVTCGHRRQRVTGLDLRQQSVGGVLS-PFVGNLSFPRSINLPNKSFRGEIPHEVSNLFR 83
T V + +T L + + V + ++ NL + +NL P +SNL +
Sbjct: 35 TDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEY---LNLNGNQITDISP--LSNLVK 89
Query: 84 LQNLTLTNNYFSGKILTDLSHCSNVMKF-EASNNKLEAEIPVEIGNLLMLQILNIAENHL 142
L NL Y +TD+S N+ E N+ + NL LN+ NH
Sbjct: 90 LTNL-----YIGTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKXYSLNLGANHN 144
Query: 143 KGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISS 202
L + + N + L + V +++ P I+++ +L S ++ NQ + PL +++S
Sbjct: 145 LSDL-SPLSNXTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLA-SLTS 200
Query: 203 LQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLF 262
L Y + N+ P+ +N T L L+I N
Sbjct: 201 LHYFTAYVNQITDITPV---------------------------ANXTRLNSLKIGNNKI 233
Query: 263 SGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPF 322
+ + S L NLS+L E +GT +D++ + LT L V
Sbjct: 234 T-----DLSPLANLSQLTWLE--IGTNQISDINAVKDLTKLKXLNV-------------- 272
Query: 323 SLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQML 382
GSNQIS V+ NL LN+L + +NQL IG L +L L
Sbjct: 273 --------------GSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTL 316
Query: 383 FLNENFLRGTIP 394
FL++N + P
Sbjct: 317 FLSQNHITDIRP 328
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Query: 78 VSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNI 137
V+N RL +L + NN + L+ L++ S + E N++ ++I + +L L+ LN+
Sbjct: 217 VANXTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQI-SDINA-VKDLTKLKXLNV 272
Query: 138 AENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPL 196
N + + + NLS L + + N+LG I + NL + +++N + + PL
Sbjct: 273 GSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRPL 329
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 12/174 (6%)
Query: 76 HEVSNLFRLQNLT---LTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLML 132
H++S L L NLT LT N +N+ + N+L++ L L
Sbjct: 76 HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135
Query: 133 QILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSG 192
LN+A N L+ L+ L E+D+ N+L + L + +NQ
Sbjct: 136 TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195
Query: 193 MIPLIYN-ISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDS 245
+ +++ ++SLQYI++H N P D P +RY S N +G +++S
Sbjct: 196 VPDGVFDRLTSLQYIWLHDN------PWD--CTCPGIRYLSEWINKHSGVVRNS 241
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 77/228 (33%), Gaps = 34/228 (14%)
Query: 197 IYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLE 256
I + +++Y+ + N+ H L L NL Y ++GN L TNL+ L
Sbjct: 59 IQYLPNVRYLALGGNKLHDISALKE---LTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115
Query: 257 INGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRF 316
+ N F +L NL+ LNL N L +
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS---------------------------- 147
Query: 317 GGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGEL 376
LP + + +TE+ NQ+ V L L L + NQL L
Sbjct: 148 ---LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 204
Query: 377 KSLQMLFLNENFLRGTIPSSXXXXXXXXXXXXEVNNLQGKIPPSIGNC 424
SLQ ++L++N T P V N G + P C
Sbjct: 205 TSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKC 252
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 67/160 (41%), Gaps = 9/160 (5%)
Query: 225 LPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGEN 284
LPN+RY ++ GN L +L TNL L + GN + F +L NL L L EN
Sbjct: 62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 285 NLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGT 344
L + D +T LT L L+ N+ LP + + +T + +NQ+
Sbjct: 120 QLQSLPDGVFDKLTNLT------YLYLYHNQLQS-LPKGVFDKLTNLTRLDLDNNQLQSL 172
Query: 345 IPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFL 384
V L L L + NQL L SL ++L
Sbjct: 173 PEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWL 212
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 8/143 (5%)
Query: 149 SIGNLSALQEID------VRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYN-IS 201
+ ++SAL+E+ + GN+L + NL + NQ + +++ ++
Sbjct: 74 KLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT 133
Query: 202 SLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNL 261
+L Y++++ N+ SLP L NL + N L + T L+ L +N N
Sbjct: 134 NLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQ 192
Query: 262 FSGKVSINFSRLQNLSRLNLGEN 284
F RL +L+ + L N
Sbjct: 193 LKSVPDGVFDRLTSLTHIWLLNN 215
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 82/178 (46%), Gaps = 15/178 (8%)
Query: 137 IAENHLKG--QLPASIGNLSALQEI----DVRGNRLGGRIPSTISHVR---NLISFNVAR 187
+ +N L Q+ A+ ++ ++Q I +VR LGG IS ++ NL +
Sbjct: 35 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTG 94
Query: 188 NQFSGMIPLIYN-ISSLQYIFIHTNRFHGSLPLDNGV--NLPNLRYFSISGNNLTGSLQD 244
NQ + +++ +++L+ + + N+ SLP +GV L NL Y + N L +
Sbjct: 95 NQLQSLPNGVFDKLTNLKELVLVENQLQ-SLP--DGVFDKLTNLTYLYLYHNQLQSLPKG 151
Query: 245 SLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTN 302
TNL L+++ N F +L L +L+L +N L + D +T LT+
Sbjct: 152 VFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTH 209
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 85/179 (47%), Gaps = 16/179 (8%)
Query: 223 VNLPNLRYFSISGNNLT--GSLQDSLSNATNLQGLEINGNLFSGKVSI--NFSRLQNLSR 278
V+LP+L + +S N L+ G S T+L+ L+++ F+G +++ NF L+ L
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVITMSSNFLGLEQLEH 400
Query: 279 LNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSN-RFGGVLPFSLANLSITMTEIANG 337
L+ +NL ++ L N L++ H+ F G+ L++L + ++A
Sbjct: 401 LDFQHSNLKQ--MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVL--KMAGN 455
Query: 338 SNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNEN--FLRGTIP 394
S Q +PD+ L NL L + QL P A L SLQ+L ++ N F T P
Sbjct: 456 SFQ-ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 513
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 472 NLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRS-IPSTLSSLKSITELDLS 530
+L+NL+ LDIS G +SLE L M NSF + +P + L+++T LDLS
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 531 RNNLSGHIP 539
+ L P
Sbjct: 479 QCQLEQLSP 487
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 83 RLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHL 142
L L LT N L S S++ K A L + IG+L L+ LN+A N +
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 143 KG-QLPASIGNLSALQEIDVRGNRL 166
+ +LP NL+ L+ +D+ N++
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 5/142 (3%)
Query: 84 LQNLTLTNNYFSGKILTDL-SHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHL 142
L+ L + N F L D+ + N+ + S +LE P +L LQ+LN++ N+
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Query: 143 KGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISF-NVARNQFSGMIP---LIY 198
L++LQ +D N + + H + ++F N+ +N F+ +
Sbjct: 507 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQ 566
Query: 199 NISSLQYIFIHTNRFHGSLPLD 220
I + + + R + P D
Sbjct: 567 WIKDQRQLLVEVERMECATPSD 588
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 29/68 (42%)
Query: 467 PAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITE 526
P L+NL LD+S PT +SL+ L M N+F L S+
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 522
Query: 527 LDLSRNNL 534
LD S N++
Sbjct: 523 LDYSLNHI 530
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 14/175 (8%)
Query: 223 VNLPNLRYFSISGNNLT--GSLQDSLSNATNLQGLEINGNLFSGKVSI--NFSRLQNLSR 278
V+LP+L + +S N L+ G S T+L+ L+++ F+G +++ NF L+ L
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVITMSSNFLGLEQLEH 400
Query: 279 LNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSN-RFGGVLPFSLANLSITMTEIANG 337
L+ +NL ++ L N L++ H+ F G+ L++L + ++A
Sbjct: 401 LDFQHSNLKQ--MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVL--KMAGN 455
Query: 338 SNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGT 392
S Q +PD+ L NL L + QL P A L SLQ+L + N L+
Sbjct: 456 SFQ-ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 472 NLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRS-IPSTLSSLKSITELDLS 530
+L+NL+ LDIS G +SLE L M NSF + +P + L+++T LDLS
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 531 RNNLSGHIP 539
+ L P
Sbjct: 479 QCQLEQLSP 487
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 34/158 (21%)
Query: 87 LTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQL 146
+T+++N+ L L H + F+ SN K +E V + L L L+I+ H +
Sbjct: 386 ITMSSNFLG---LEQLEH----LDFQHSNLKQMSEFSVFLS-LRNLIYLDISHTHTRVAF 437
Query: 147 PASIGNLSALQEIDVRGNRLGGR-IPSTISHVRNLISFNVARNQFSGMIPLIYN------ 199
LS+L+ + + GN +P + +RNL ++++ Q + P +N
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497
Query: 200 -------------------ISSLQYIFIHTNRFHGSLP 218
++SLQ I++HTN + S P
Sbjct: 498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Query: 84 LQNLTLTNNYFSGKILTDL-SHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHL 142
L+ L + N F L D+ + N+ + S +LE P +L LQ+LN+A N L
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Query: 143 KGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSG 192
K L++LQ+I + N P I ++ ++ N + Q S
Sbjct: 507 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPR-IDYLSRWLNKNSQKEQGSA 555
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 83 RLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHL 142
L L LT N L S S++ K A L + IG+L L+ LN+A N +
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 143 KG-QLPASIGNLSALQEIDVRGNRL 166
+ +LP NL+ L+ +D+ N++
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 16/179 (8%)
Query: 223 VNLPNLRYFSISGNNLT--GSLQDSLSNATNLQGLEINGNLFSGKVSI--NFSRLQNLSR 278
V+LP+L + +S N L+ G S +L+ L+++ F+G +++ NF L+ L
Sbjct: 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLS---FNGVITMSSNFLGLEQLEH 424
Query: 279 LNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSN-RFGGVLPFSLANLSITMTEIANG 337
L+ +NL ++ L N L++ H+ F G+ L++L + ++A
Sbjct: 425 LDFQHSNLKQ--MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVL--KMAGN 479
Query: 338 SNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNEN--FLRGTIP 394
S Q +PD+ L NL L + QL P A L SLQ+L ++ N F T P
Sbjct: 480 SFQ-ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 537
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 472 NLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRS-IPSTLSSLKSITELDLS 530
+L+NL+ LDIS G +SLE L M NSF + +P + L+++T LDLS
Sbjct: 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 502
Query: 531 RNNLSGHIP 539
+ L P
Sbjct: 503 QCQLEQLSP 511
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 83 RLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHL 142
L L LT N L S S++ K A L + IG+L L+ LN+A N +
Sbjct: 101 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 160
Query: 143 KG-QLPASIGNLSALQEIDVRGNRL 166
+ +LP NL+ L+ +D+ N++
Sbjct: 161 QSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 5/142 (3%)
Query: 84 LQNLTLTNNYFSGKILTDL-SHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHL 142
L+ L + N F L D+ + N+ + S +LE P +L LQ+LN++ N+
Sbjct: 471 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Query: 143 KGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISF-NVARNQFSGMIP---LIY 198
L++LQ +D N + + H + ++F N+ +N F+ +
Sbjct: 531 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQ 590
Query: 199 NISSLQYIFIHTNRFHGSLPLD 220
I + + + R + P D
Sbjct: 591 WIKDQRQLLVEVERMECATPSD 612
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 29/68 (42%)
Query: 467 PAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITE 526
P L+NL LD+S PT +SL+ L M N+F L S+
Sbjct: 487 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 546
Query: 527 LDLSRNNL 534
LD S N++
Sbjct: 547 LDYSLNHI 554
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 65/159 (40%), Gaps = 15/159 (9%)
Query: 270 FSRLQNLSRLNLGENNLGT---GTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLAN 326
F L +L++L LG N L + G N L T L L+L +N+ LP + +
Sbjct: 48 FDELTSLTQLYLGGNKLQSLPNGVFNKL---------TSLTYLNLSTNQLQS-LPNGVFD 97
Query: 327 LSITMTEIANGSNQISGTIPD-VIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLN 385
+ E+A +NQ+ ++PD V L L L + NQL L SLQ ++L+
Sbjct: 98 KLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 156
Query: 386 ENFLRGTIPSSXXXXXXXXXXXXEVNNLQGKIPPSIGNC 424
+N T P V N G + P C
Sbjct: 157 DNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKC 195
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 11/132 (8%)
Query: 116 NKLEAEIPVEIGNLLM-LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTI 174
NKL++ +P + N L L LN++ N L+ L+ L+E+ + N+L
Sbjct: 62 NKLQS-LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVF 120
Query: 175 SHVRNLISFNVARNQFSGMIPLIYN-ISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSI 233
+ L + +NQ + +++ ++SLQYI++H N P D P +RY S
Sbjct: 121 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN------PWD--CTCPGIRYLSE 172
Query: 234 SGNNLTGSLQDS 245
N +G +++S
Sbjct: 173 WINKHSGVVRNS 184
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 22/168 (13%)
Query: 174 ISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSI 233
I ++ NL S N++ NQ + + P+ Y + ++ +F++ N+ PL NL NL + +
Sbjct: 62 IQYLPNLTSLNLSNNQITDISPIQY-LPNVTKLFLNGNKLTDIKPL---ANLKNLGWLFL 117
Query: 234 SGNNLTGSLQDSLSNATNLQGLEING-NLFSGKVSINFSRLQNLSRLNLGENNLGTGTAN 292
N + LE NG + +G V L L L LG N +
Sbjct: 118 DENKVKDLSSLKDLKKLKSLSLEHNGISDINGLV-----HLPQLESLYLGNNKITD---- 168
Query: 293 DLDFITLLTNCTKLEVLDLHSNRFGGVLPFS----LANLSITMTEIAN 336
IT+L+ TKL+ L L N+ ++P + L NL ++ I++
Sbjct: 169 ----ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD 212
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 337 GSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFL 389
G+N+I+ V++ L L+ L +E NQ++ +PLA L LQ L+L++N +
Sbjct: 162 GNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHI 210
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 467 PAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT 511
PAE+ NL NL LD+S N + +P LG C L+Y DN T
Sbjct: 263 PAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT 306
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 79 SNLFRLQNLTLTNNYFSGKILTDL----SHCSNVMKFEASNNKLEAEIPVEIGNLLMLQI 134
+N+F+ LT Y +G LT+L + SN+ + S+N+L + +P E+G+ L+
Sbjct: 241 ANIFKYD--FLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKY 297
Query: 135 LNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRI 170
+N + LP GNL LQ + V GN L +
Sbjct: 298 FYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQF 332
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 66/153 (43%), Gaps = 21/153 (13%)
Query: 244 DSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNC 303
D L +A +L L+I +S N + L+RL L N+L A + N
Sbjct: 223 DQLWHALDLSNLQIFN------ISANIFKYDFLTRLYLNGNSLTELPAE-------IKNL 269
Query: 304 TKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESN 363
+ L VLDL NR LP L + + N ++ T+P NL NL LGVE N
Sbjct: 270 SNLRVLDLSHNRLTS-LPAELGS-CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326
Query: 364 QLAGTIPLAIGELKSLQ--MLFLNENFLRGTIP 394
L L I KS+ + +L +N R IP
Sbjct: 327 PLEKQF-LKILTEKSVTGLIFYLRDN--RPEIP 356
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 15/94 (15%)
Query: 132 LQILNIAENHLK--------------GQLPASIGNLSALQEIDVRGNRLGGRIPSTISHV 177
LQI NI+ N K +LPA I NLS L+ +D+ NRL +P+ +
Sbjct: 234 LQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSC 292
Query: 178 RNLISFNVARNQFSGMIPLIYNISSLQYIFIHTN 211
L F N + + N+ +LQ++ + N
Sbjct: 293 FQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN 326
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 3/159 (1%)
Query: 132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGN-RLGGRIPSTISHVRNLISFNVARNQF 190
L IL + N L A+ L+ L+++D+ N +L P+T + L + ++ R
Sbjct: 58 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117
Query: 191 SGMIP-LIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNA 249
+ P L +++LQY+++ N +LP D +L NL + + GN ++ + +
Sbjct: 118 QELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 176
Query: 250 TNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGT 288
+L L ++ N + F L L L L NNL
Sbjct: 177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 3/159 (1%)
Query: 132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGN-RLGGRIPSTISHVRNLISFNVARNQF 190
L IL + N L A+ L+ L+++D+ N +L P+T + L + ++ R
Sbjct: 57 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 116
Query: 191 SGMIP-LIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNA 249
+ P L +++LQY+++ N +LP D +L NL + + GN ++ + +
Sbjct: 117 QELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 175
Query: 250 TNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGT 288
+L L ++ N + F L L L L NNL
Sbjct: 176 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 214
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 467 PAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITE 526
PA L L +L + P G +L+YL +QDN+ T L ++T
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 156
Query: 527 LDLSRNNLSGHIPQ 540
L L N +S +P+
Sbjct: 157 LFLHGNRISS-VPE 169
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 31/169 (18%)
Query: 80 NLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAE 139
+L L L LT N L S S++ K A L + IG+L L+ LN+A
Sbjct: 76 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 135
Query: 140 NHLKG-QLPASIGNLSALQEIDVRGNRLGG------RI---------------------- 170
N ++ +LP NL+ L+ +D+ N++ R+
Sbjct: 136 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 195
Query: 171 PSTISHVRNLISFNVARNQFSGMIPLIYN-ISSLQYIFIHTNRFHGSLP 218
P +R L + NQ + I++ ++SLQ I++HTN + S P
Sbjct: 196 PGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 243
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 31/169 (18%)
Query: 80 NLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAE 139
+L L L LT N L S S++ K A L + IG+L L+ LN+A
Sbjct: 75 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 134
Query: 140 NHLKG-QLPASIGNLSALQEIDVRGNRLGG------RI---------------------- 170
N ++ +LP NL+ L+ +D+ N++ R+
Sbjct: 135 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 194
Query: 171 PSTISHVRNLISFNVARNQFSGMIPLIYN-ISSLQYIFIHTNRFHGSLP 218
P +R L + NQ + I++ ++SLQ I++HTN + S P
Sbjct: 195 PGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 242
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 31/169 (18%)
Query: 80 NLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAE 139
+L L L LT N L S S++ K A L + IG+L L+ LN+A
Sbjct: 75 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 134
Query: 140 NHLKG-QLPASIGNLSALQEIDVRGNRLGG------RI---------------------- 170
N ++ +LP NL+ L+ +D+ N++ R+
Sbjct: 135 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 194
Query: 171 PSTISHVRNLISFNVARNQFSGMIPLIYN-ISSLQYIFIHTNRFHGSLP 218
P +R L + NQ + I++ ++SLQ I++HTN + S P
Sbjct: 195 PGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 242
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 16/186 (8%)
Query: 216 SLPLDNGVNLPNLRYFSISGNNLT--GSLQDSLSNATNLQGLEINGNLFSGKVSI--NFS 271
SLP L L S+S N L+ G S T+L+ L+++ F+G +++ NF
Sbjct: 42 SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVITMSSNFL 98
Query: 272 RLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSN-RFGGVLPFSLANLSIT 330
L+ L L+ +NL ++ L N L++ H+ F G+ L++L +
Sbjct: 99 GLEQLEHLDFQHSNLKQ--MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVL 155
Query: 331 MTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNEN--F 388
++A S Q +PD+ L NL L + QL P A L SLQ+L ++ N F
Sbjct: 156 --KMAGNSFQ-ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212
Query: 389 LRGTIP 394
T P
Sbjct: 213 SLDTFP 218
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 472 NLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRS-IPSTLSSLKSITELDLS 530
+L+NL+ LDIS G +SLE L M NSF + +P + L+++T LDLS
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183
Query: 531 RNNLSGHIP 539
+ L P
Sbjct: 184 QCQLEQLSP 192
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 29/68 (42%)
Query: 467 PAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITE 526
P L+NL LD+S PT +SL+ L M N+F L S+
Sbjct: 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227
Query: 527 LDLSRNNL 534
LD S N++
Sbjct: 228 LDYSLNHI 235
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 31/169 (18%)
Query: 80 NLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAE 139
+L L L LT N L S S++ K A L + IG+L L+ LN+A
Sbjct: 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133
Query: 140 NHLKG-QLPASIGNLSALQEIDVRGNRLGG------RI---------------------- 170
N ++ +LP NL+ L+ +D+ N++ R+
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193
Query: 171 PSTISHVRNLISFNVARNQFSGMIPLIYN-ISSLQYIFIHTNRFHGSLP 218
P +R L + NQ + I++ ++SLQ I++HTN + S P
Sbjct: 194 PGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 31/169 (18%)
Query: 80 NLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAE 139
+L L L LT N L S S++ K A L + IG+L L+ LN+A
Sbjct: 76 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAH 135
Query: 140 NHLKG-QLPASIGNLSALQEIDVRGNRLGG------RI---------------------- 170
N ++ +LP NL+ L+ +D+ N++ R+
Sbjct: 136 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 195
Query: 171 PSTISHVRNLISFNVARNQFSGMIPLIYN-ISSLQYIFIHTNRFHGSLP 218
P +R L + NQ + I++ ++SLQ I++HTN + S P
Sbjct: 196 PGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 243
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 9/150 (6%)
Query: 222 GVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNL 281
G+ ++ +S + + L+ S+ T+L+ L + N + F L +L +LNL
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL 330
Query: 282 GENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQI 341
+N LG+ + + N KLEVLDL N + S L + E+A +NQ+
Sbjct: 331 SQNFLGSIDSR------MFENLDKLEVLDLSYNHIRALGDQSFLGLP-NLKELALDTNQL 383
Query: 342 SGTIPD-VIANLVNLNALGVESNQLAGTIP 370
++PD + L +L + + +N + P
Sbjct: 384 K-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 412
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 23/140 (16%)
Query: 79 SNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIA 138
S+ L+ LTL N + ++++K S N L + NL L++L+++
Sbjct: 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355
Query: 139 ENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIY 198
NH++ S L L+E+ + N+L +P I
Sbjct: 356 YNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGI----------------------FD 392
Query: 199 NISSLQYIFIHTNRFHGSLP 218
++SLQ I++HTN + S P
Sbjct: 393 RLTSLQKIWLHTNPWDCSCP 412
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 78/202 (38%), Gaps = 33/202 (16%)
Query: 225 LPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGE- 283
LP+L + N LT + + L+ L + N S F+R+ +L RL+LGE
Sbjct: 82 LPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGEL 141
Query: 284 -----------------NNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLAN 326
L G N D I LT +LE L+L NR + P S
Sbjct: 142 KRLEYISEAAFEGLVNLRYLNLGMCNLKD-IPNLTALVRLEELELSGNRLDLIRPGSFQG 200
Query: 327 LSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNE 386
L+ ++ ++ Q++ + +L +L L + N L L L+ + LN
Sbjct: 201 LT-SLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNH 259
Query: 387 N-------------FLRGTIPS 395
N +L+ T+PS
Sbjct: 260 NPWHCNCDVLWLSWWLKETVPS 281
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 469 EVGNLKNLV---SLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSIT 525
++ NL LV L++S N P + G TSL L + + LKS+
Sbjct: 170 DIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLE 229
Query: 526 ELDLSRNNL 534
EL+LS NNL
Sbjct: 230 ELNLSHNNL 238
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 98/238 (41%), Gaps = 20/238 (8%)
Query: 166 LGGRIPSTISHVRNLISFNVARNQFSGMI-PLIYNISSLQYIFIHTNRFHGSLPLDNGVN 224
L R+ T+ ++ L N+A N+ + + Y + +LQ + + N G L N
Sbjct: 281 LNSRVFETLKDLKVL---NLAYNKINKIADEAFYGLDNLQVLNLSYNLL-GELYSSNFYG 336
Query: 225 LPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSG--------KVSINFSRLQNL 276
LP + Y + N++ + LQ L++ N + + ++ ++L L
Sbjct: 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTL 396
Query: 277 SRLNLGEN--NLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEI 334
++NL N +L +LD + L L++L L+ NRF + + ++ ++
Sbjct: 397 PKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQL 456
Query: 335 ANGSNQI-----SGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNEN 387
G N + + DV L +L L + N L P L +L+ L LN N
Sbjct: 457 FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN 514
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 10/107 (9%)
Query: 132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISH---VRNLISFNVARN 188
LQ+L + N+L P +L+AL+ + + NRL + +SH NL +++RN
Sbjct: 482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL-----TVLSHNDLPANLEILDISRN 536
Query: 189 QFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISG 235
Q P ++ SL + I N+F L +N N +I+G
Sbjct: 537 QLLAPNPDVF--VSLSVLDITHNKFICECELSTFINWLNHTNVTIAG 581
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 35.0 bits (79), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 102/238 (42%), Gaps = 35/238 (14%)
Query: 77 EVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVE-IGNLLMLQIL 135
++ NL LQ L L+ N G C + + + L + P NL +L++L
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVL 429
Query: 136 NIAENHLKGQLPASIGNLSALQEIDVRGNRL-GGRIPSTISHVRNLISFNVARNQFSGMI 194
N++ L + L L+ ++++GN G I T NL+ Q G +
Sbjct: 430 NLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKT-----NLL-------QMVGSL 477
Query: 195 PLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQG 254
++ +SS + I FHG L N+ + +S N+LTG D+LS +L+G
Sbjct: 478 EILI-LSSCNLLSIDQQAFHG---------LRNVNHLDLSHNSLTGDSMDALS---HLKG 524
Query: 255 LEINGNLFSGKVSIN----FSRLQNLSRLNLGENNLGTGTANDLDFITLLT-NCTKLE 307
L + N+ S + I L S +NL N L T +++ FIT N KLE
Sbjct: 525 LYL--NMASNNIRIIPPHLLPALSQQSIINLSHNPLDC-TCSNIHFITWYKENLHKLE 579
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 79/204 (38%), Gaps = 37/204 (18%)
Query: 225 LPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGE- 283
LP+L + N LT + + L+ L + N S F+R+ +L RL+LGE
Sbjct: 82 LPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGEL 141
Query: 284 -------------------NNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSL 324
NLG D+ +T L +LE L+L NR + P S
Sbjct: 142 KRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTAL---VRLEELELSGNRLDLIRPGSF 198
Query: 325 ANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFL 384
L+ ++ ++ Q++ + +L +L L + N L L L+ + L
Sbjct: 199 QGLT-SLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHL 257
Query: 385 NEN-------------FLRGTIPS 395
N N +L+ T+PS
Sbjct: 258 NHNPWHCNCDVLWLSWWLKETVPS 281
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 469 EVGNLKNLV---SLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSIT 525
++ NL LV L++S N P + G TSL L + + LKS+
Sbjct: 170 DIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLE 229
Query: 526 ELDLSRNNL 534
EL+LS NNL
Sbjct: 230 ELNLSHNNL 238
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 7/121 (5%)
Query: 270 FSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSI 329
F L L+ LNL N L T +A D + T+L L L +N+ LP + +
Sbjct: 55 FRGLTKLTWLNLDYNQLQTLSAGVFD------DLTELGTLGLANNQLAS-LPLGVFDHLT 107
Query: 330 TMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFL 389
+ ++ G NQ+ V L L L + +NQL A +L +LQ L L+ N L
Sbjct: 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Query: 390 R 390
+
Sbjct: 168 Q 168
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 8/161 (4%)
Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYN-ISSLQYIFIHTNRFHG 215
+++D++ L +T + L N+ NQ + +++ ++ L + + N+
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-A 96
Query: 216 SLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQN 275
SLPL +L L + GN L T L+ L +N N + F +L N
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156
Query: 276 LSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRF 316
L L+L N L + D + KL+ + L N+F
Sbjct: 157 LQTLSLSTNQLQSVPHGAFDRL------GKLQTITLFGNQF 191
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 86/200 (43%), Gaps = 21/200 (10%)
Query: 25 TGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGN-----LSFPRSINLPNKSFRGEIPHEVS 79
TG TC ++ V D + +S+ V S + L L + +FRG
Sbjct: 8 TGCTCNEGKKEV---DCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWL 64
Query: 80 NLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEI-GNLLMLQILNIA 138
NL Q TL+ F LT+L +NN+L A +P+ + +L L L +
Sbjct: 65 NLDYNQLQTLSAGVFDD--LTELG------TLGLANNQL-ASLPLGVFDHLTQLDKLYLG 115
Query: 139 ENHLKGQLPASI-GNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLI 197
N LK LP+ + L+ L+E+ + N+L + NL + +++ NQ +
Sbjct: 116 GNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174
Query: 198 YN-ISSLQYIFIHTNRFHGS 216
++ + LQ I + N+F S
Sbjct: 175 FDRLGKLQTITLFGNQFDCS 194
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 7/121 (5%)
Query: 270 FSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSI 329
F L L+ LNL N L T +A D + T+L L L +N+ LP + +
Sbjct: 55 FRGLTKLTWLNLDYNQLQTLSAGVFD------DLTELGTLGLANNQLAS-LPLGVFDHLT 107
Query: 330 TMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFL 389
+ ++ G NQ+ V L L L + +NQL A +L +LQ L L+ N L
Sbjct: 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Query: 390 R 390
+
Sbjct: 168 Q 168
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 68/165 (41%), Gaps = 11/165 (6%)
Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYN-ISSLQYIFIHTNRFHG 215
+++D++ L +T + L N+ NQ + +++ ++ L + + N+
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-A 96
Query: 216 SLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQN 275
SLPL +L L + GN L T L+ L +N N + F +L N
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156
Query: 276 LSRLNLGENNLGT------GTANDLDFITLLTN---CTKLEVLDL 311
L L+L N L + L ITL N C++ E+L L
Sbjct: 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYL 201
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 86/200 (43%), Gaps = 21/200 (10%)
Query: 25 TGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGN-----LSFPRSINLPNKSFRGEIPHEVS 79
TG TC ++ V D + +S+ V S + L L + +FRG
Sbjct: 8 TGCTCNEGKKEV---DCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWL 64
Query: 80 NLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEI-GNLLMLQILNIA 138
NL Q TL+ F LT+L +NN+L A +P+ + +L L L +
Sbjct: 65 NLDYNQLQTLSAGVFDD--LTELG------TLGLANNQL-ASLPLGVFDHLTQLDKLYLG 115
Query: 139 ENHLKGQLPASI-GNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLI 197
N LK LP+ + L+ L+E+ + N+L + NL + +++ NQ +
Sbjct: 116 GNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174
Query: 198 YN-ISSLQYIFIHTNRFHGS 216
++ + LQ I + N+F S
Sbjct: 175 FDRLGKLQTITLFGNQFDCS 194
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 127/302 (42%), Gaps = 53/302 (17%)
Query: 106 SNVMKFEASNNKLEAEIP---VEIGNLLMLQILNIAEN-HLKGQLPASIGNLSALQEIDV 161
S++ K + S+N L+ P IG L L + N N HL +L + N +++Q + +
Sbjct: 171 SSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSN-TSIQNLSL 229
Query: 162 RGNRLGGRIPSTISHVR--NLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPL 219
N+L ST S ++ NL +++ N ++++ + + +
Sbjct: 230 ANNQLLATSESTFSGLKWTNLTQLDLSYNN-------LHDVGNGSFSY------------ 270
Query: 220 DNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSI---------NF 270
LP+LRY S+ NN+ S +NL+ L + VS+ +F
Sbjct: 271 -----LPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSF 325
Query: 271 SRLQNLSRLNLGENNLGTGTAN------DLDFITLLTNCTKLEVLDLHSNRFGGVLPFSL 324
L+ L LN+ +NN+ + +N L +++L T L+ L + F + L
Sbjct: 326 QWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLT--NETFVSLAHSPL 383
Query: 325 ANLSIT---MTEIANGSNQISGT--IPDVIANLVNLNALGVESNQLAGTIPLAIGELKSL 379
L++T +++IANG+ G I D+ N + G E L + + K L
Sbjct: 384 LTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYL 443
Query: 380 QM 381
Q+
Sbjct: 444 QL 445
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
Query: 106 SNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNR 165
S+ + E +NKL++ L L L++++N ++ L+ L + + N+
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 166 LGGRIPSTISHVRNLISFNVARNQFSGMIPLIYN-ISSLQYIFIHTNRFHGSLP 218
L + L + NQ + I++ ++SLQ I++HTN + S P
Sbjct: 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 31/125 (24%)
Query: 270 FSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSI 329
F +L L++L+L +N + + D +T KL +L LH N+
Sbjct: 48 FDKLTQLTKLSLSQNQIQSLPDGVFDKLT------KLTILYLHENK-------------- 87
Query: 330 TMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFL 389
+ + NG V L L L +++NQL L SLQ ++L+ N
Sbjct: 88 -LQSLPNG----------VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136
Query: 390 RGTIP 394
+ P
Sbjct: 137 DCSCP 141
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 5/128 (3%)
Query: 73 EIPHEVSNLFRLQNLTLTNNYFSGKILTD--LSHCSNVMKFEASNNKLEAEIPVEIGNLL 130
EIP ++ L L +N G+I +D +++K E N+L P
Sbjct: 22 EIPRDIP--LHTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS 78
Query: 131 MLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQF 190
+Q L + EN +K L L+ +++ N++ +P + H+ +L S N+A N F
Sbjct: 79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Query: 191 SGMIPLIY 198
+ L +
Sbjct: 139 NCNCHLAW 146
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 86/186 (46%), Gaps = 29/186 (15%)
Query: 174 ISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSI 233
I ++ NLI + NQ + + PL N++ + + + N PL N + L+ SI
Sbjct: 65 IQYLNNLIGLELKDNQITDLTPL-KNLTKITELELSGN------PLKNVSAIAGLQ--SI 115
Query: 234 SGNNLTGS-LQD--SLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGT 290
+LT + + D L+ +NLQ L ++ N + + L NL L++G N +
Sbjct: 116 KTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQV---- 169
Query: 291 ANDLDFITLLTNCTKLEVLDLHSNRFGGVLPF-SLANLSITMTEIANGSNQISGTIPDVI 349
NDL T L N +KL L N+ + P SL NL E+ NQIS P +
Sbjct: 170 -NDL---TPLANLSKLTTLRADDNKISDISPLASLPNL----IEVHLKDNQISDVSP--L 219
Query: 350 ANLVNL 355
ANL NL
Sbjct: 220 ANLSNL 225
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 19/145 (13%)
Query: 251 NLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLD 310
NL GLE+ N + + + L+NL+++ E + N L ++ + ++ LD
Sbjct: 70 NLIGLELKDNQIT-----DLTPLKNLTKITELE-----LSGNPLKNVSAIAGLQSIKTLD 119
Query: 311 LHSNRFGGVLPFS-LANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTI 369
L S + V P + L+NL + ++ NQI+ P +A L NL L + +NQ+
Sbjct: 120 LTSTQITDVTPLAGLSNLQVLYLDL----NQITNISP--LAGLTNLQYLSIGNNQVNDLT 173
Query: 370 PLAIGELKSLQMLFLNENFLRGTIP 394
PLA L L L ++N + P
Sbjct: 174 PLA--NLSKLTTLRADDNKISDISP 196
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 19/150 (12%)
Query: 246 LSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTK 305
L N T + LE++GN +I + LQ++ L+L T+ + +T L +
Sbjct: 87 LKNLTKITELELSGNPLKNVSAI--AGLQSIKTLDL--------TSTQITDVTPLAGLSN 136
Query: 306 LEVLDLHSNRFGGVLPFS-LANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQ 364
L+VL L N+ + P + L NL ++ G+NQ++ P +ANL L L + N+
Sbjct: 137 LQVLYLDLNQITNISPLAGLTNLQY----LSIGNNQVNDLTP--LANLSKLTTLRADDNK 190
Query: 365 LAGTIPLAIGELKSLQMLFLNENFLRGTIP 394
++ PLA L +L + L +N + P
Sbjct: 191 ISDISPLA--SLPNLIEVHLKDNQISDVSP 218
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 58/145 (40%), Gaps = 33/145 (22%)
Query: 250 TNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVL 309
TN Q L ++ N + F L NL L LG N LG D +T LT VL
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT------VL 93
Query: 310 DLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTI 369
DL G+NQ++ V LV+L L + N+L +
Sbjct: 94 DL-------------------------GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-EL 127
Query: 370 PLAIGELKSLQMLFLNENFLRGTIP 394
P I L L L L++N L+ +IP
Sbjct: 128 PRGIERLTHLTHLALDQNQLK-SIP 151
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 337 GSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFL 389
G+N+I+ V++ L L+ L +E NQ++ +PLA L LQ L+L++N +
Sbjct: 137 GNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPLAC--LTKLQNLYLSKNHI 185
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 24/87 (27%)
Query: 132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFS 191
+++L++ N +K +P + L ALQE++V N+L +P I F+
Sbjct: 423 IKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKS-VPDGI--------FD------- 465
Query: 192 GMIPLIYNISSLQYIFIHTNRFHGSLP 218
++SLQ I++HTN + S P
Sbjct: 466 -------RLTSLQKIWLHTNPWDCSCP 485
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 95 SGKILTD-LSHC--SNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIG 151
S ILTD + C + + +NK+++ IP ++ L LQ LN+A N LK
Sbjct: 407 SSNILTDTIFRCLPPRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFD 465
Query: 152 NLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSG 192
L++LQ+I + N P I ++ ++ N + Q S
Sbjct: 466 RLTSLQKIWLHTNPWDCSCPR-IDYLSRWLNKNSQKEQGSA 505
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 476 LVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTR--SIPSTLSSLKSITELDLSRNN 533
+ LD S+N+ + + G T LE L +Q N I + +KS+ +LD+S+N+
Sbjct: 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385
Query: 534 LS 535
+S
Sbjct: 386 VS 387
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 112/278 (40%), Gaps = 43/278 (15%)
Query: 12 TSSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFR 71
T+ W SI+ + G R +G L+ S+ V+S G FP+S +
Sbjct: 247 TTVWYFSISNVKLQG-QLDFRDFDYSGTSLKALSIHQVVSDVFG---FPQS-------YI 295
Query: 72 GEIPHEVSNLFRLQNLTLTNNYFSGKILTDL---SHCSNVMKFEASNNKLEAEIPVEIGN 128
EI N+ + N SG + + S S + + SNN L + G+
Sbjct: 296 YEI---------FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGH 346
Query: 129 LLMLQILNIAENHLK--GQLPASIGNLSALQEIDVRGNRLG-GRIPSTISHVRNLISFNV 185
L L+ L + N LK ++ + +LQ++D+ N + S ++L+S N+
Sbjct: 347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406
Query: 186 ARNQFSGMI-----PLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTG 240
+ N + I P I + + +H+N+ S+P V L L+ +++ N L
Sbjct: 407 SSNILTDTIFRCLPPRI------KVLDLHSNKI-KSIP-KQVVKLEALQELNVASNQLKS 458
Query: 241 SLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSR 278
T+LQ + ++ N + R+ LSR
Sbjct: 459 VPDGIFDRLTSLQKIWLHTNPWDCSC----PRIDYLSR 492
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 73/184 (39%), Gaps = 45/184 (24%)
Query: 230 YFSISGNNLTGSLQDSLSNATNLQGLEINGNLFS--GKVSINFSRLQNLSRLNLGENNLG 287
+ S N LT ++ ++ + T L+ L + N K++ +++++L +L++ +N++
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 288 TGTAN-DLDFIT----------LLTNCT------KLEVLDLHSNRFGGVLPFSLANLSIT 330
D + +LT+ +++VLDLHSN+
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK------------- 434
Query: 331 MTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLR 390
+IP + L L L V SNQL L SLQ ++L+ N
Sbjct: 435 -------------SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481
Query: 391 GTIP 394
+ P
Sbjct: 482 CSCP 485
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
Query: 132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFS 191
L++L+++ N+L S+ L LQE+ + N+L +++ V L+ ++RNQ
Sbjct: 433 LEVLDVSNNNLDS---FSLF-LPRLQELYISRNKLKTLPDASLFPV--LLVMKISRNQLK 486
Query: 192 GMIPLIYN-ISSLQYIFIHTNRFHGSLP 218
+ I++ ++SLQ I++HTN + S P
Sbjct: 487 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 514
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 472 NLKNLVSLDISSNMFSGEI---PTTLGGCTSLEYLGMQDNSFTRSIPST---LSSLKSIT 525
+LK+L LD+S N+ E G SL+ L + N RS+ T L +LK++T
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL-RSMQKTGEILLTLKNLT 390
Query: 526 ELDLSRNNL 534
LD+SRN
Sbjct: 391 SLDISRNTF 399
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 339 NQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIP 394
NQI+ P V +LVNL L SN+L +L L L LN+N L+ +IP
Sbjct: 43 NQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK-SIP 97
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 337 GSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFL 389
G+N+I+ V++ L L+ L +E NQ++ +PLA L LQ L+L++N +
Sbjct: 139 GNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHI 187
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 98/249 (39%), Gaps = 20/249 (8%)
Query: 74 IPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQ 133
+P E+S L L L NN S D ++ NNK+ L LQ
Sbjct: 48 VPKEISPDTTL--LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105
Query: 134 ILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQF--S 191
L I++NHL ++P ++ S+L E+ + NR+ S +RN+ + N S
Sbjct: 106 KLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS 162
Query: 192 GMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPN-LRYFSISGNNLTGSLQDSLSNAT 250
G P ++ L Y+ I + G +P D LP L + N + + L +
Sbjct: 163 GFEPGAFDGLKLNYLRISEAKLTG-IPKD----LPETLNELHLDHNKIQAIELEDLLRYS 217
Query: 251 NLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLD 310
L L + N + + S L L L+L N L A L + L+V+
Sbjct: 218 KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG-------LPDLKLLQVVY 270
Query: 311 LHSNRFGGV 319
LH+N V
Sbjct: 271 LHTNNITKV 279
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 468 AEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSI-PSTLSSLKSITE 526
A + +NL L + SN +G G T LE L + DN+ R + P+T L +
Sbjct: 49 ASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHT 108
Query: 527 LDLSRNNL 534
L L R L
Sbjct: 109 LHLDRCGL 116
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 81/206 (39%), Gaps = 21/206 (10%)
Query: 201 SSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGN 260
+S Q IF+H NR +P + + NL + N L G + + T L+ L+++ N
Sbjct: 31 ASSQRIFLHGNRI-SYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDN 89
Query: 261 LFSGKVS-INFSRLQNLSRLNL---GENNLGTGTANDLDFITLL---------------T 301
V F L +L L+L G LG G L + L
Sbjct: 90 AQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFR 149
Query: 302 NCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVE 361
+ L L LH NR V + L ++ + N ++ P +L L L +
Sbjct: 150 DLGNLTHLFLHGNRIPSVPEHAFRGLH-SLDRLLLHQNHVARVHPHAFRDLGRLMTLYLF 208
Query: 362 SNQLAGTIPLAIGELKSLQMLFLNEN 387
+N L+ + L+SLQ L LN+N
Sbjct: 209 ANNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 66/158 (41%), Gaps = 27/158 (17%)
Query: 132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGN-RLGGRIPSTISHVRNLISFNVARNQF 190
L IL + N L G A+ L+ L+++D+ N +L P+T + +L + ++ R
Sbjct: 57 LTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGL 116
Query: 191 SGMIP-LIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNA 249
+ P L +++LQY+++ NNL ++ +
Sbjct: 117 QELGPGLFRGLAALQYLYL-------------------------QDNNLQALPDNTFRDL 151
Query: 250 TNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLG 287
NL L ++GN F L +L RL L +N++
Sbjct: 152 GNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVA 189
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 337 GSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFL 389
G+N+I+ V++ L L+ L +E NQ++ +PLA L LQ L+L++N +
Sbjct: 142 GNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHI 190
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 65/172 (37%), Gaps = 8/172 (4%)
Query: 223 VNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLG 282
V+ +R + G+ S+ D L + + + NL + RL L R
Sbjct: 72 VDRVQMRRCMLPGHTPIASILDYLGIVSPTTLIFESDNLGMNITRQHLDRLHGLKRFRFT 131
Query: 283 ENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQIS 342
L AN LLT+ L L+L +N +P L + + I GSN++
Sbjct: 132 TRRLTHIPAN------LLTDMRNLSHLELRAN--IEEMPSHLFDDLENLESIEFGSNKLR 183
Query: 343 GTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIP 394
+ + L L + SNQL L SLQ ++L+ N + P
Sbjct: 184 QMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 235
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 130 LMLQILNIAENHLKG---QLPASI-GNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNV 185
L+ + N++ L+ ++P+ + +L L+ I+ N+L + L N+
Sbjct: 142 LLTDMRNLSHLELRANIEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNL 201
Query: 186 ARNQFSGMIPLIYN-ISSLQYIFIHTNRFHGSLP 218
A NQ + I++ ++SLQ I++HTN + S P
Sbjct: 202 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 235
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 337 GSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFL 389
G+N+I+ V++ L L+ L +E NQ+ +PLA L LQ L+L++N +
Sbjct: 140 GNNKITDIT--VLSRLTKLDTLSLEDNQIRRIVPLA--RLTKLQNLYLSKNHI 188
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 111 FEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRI 170
+ S+N+L++ +P+ L L +L+++ N L ++ L LQE+ ++GN L
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 171 PSTISHVRNLISFNVARNQFSGM 193
P ++ L ++A NQ + +
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTEL 163
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 337 GSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFL 389
G+N+I+ V++ L L+ L +E NQ++ +PLA L LQ L+L++N +
Sbjct: 140 GNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHI 188
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 337 GSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFL 389
G+N+I+ V++ L L+ L +E NQ++ +PLA L LQ L+L++N +
Sbjct: 142 GNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHI 190
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 111 FEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRI 170
+ S+N+L++ +P+ L L +L+++ N L ++ L LQE+ ++GN L
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 171 PSTISHVRNLISFNVARNQFSGM 193
P ++ L ++A NQ + +
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTEL 163
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 111 FEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRI 170
+ S+N+L++ +P+ L L +L+++ N L ++ L LQE+ ++GN L
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 171 PSTISHVRNLISFNVARNQFSGM 193
P ++ L ++A NQ + +
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTEL 163
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 111 FEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRI 170
+ S+N+L++ +P+ L L +L+++ N L ++ L LQE+ ++GN L
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 171 PSTISHVRNLISFNVARNQFSGM 193
P ++ L ++A NQ + +
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTEL 163
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 64/158 (40%), Gaps = 7/158 (4%)
Query: 229 RYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGT 288
R + N + QD ++ +L+ LE+N N+ S F+ L NL L L N L
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94
Query: 289 GTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDV 348
L T L+N TK LD+ N+ +L + +L + + G N +
Sbjct: 95 IP---LGVFTGLSNLTK---LDISENKIVILLDYMFQDL-YNLKSLEVGDNDLVYISHRA 147
Query: 349 IANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNE 386
+ L +L L +E L A+ L L +L L
Sbjct: 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 95/238 (39%), Gaps = 24/238 (10%)
Query: 75 PHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQI 134
P +NLF L+ L L +N L + SN+ K + S NK+ + +L L+
Sbjct: 73 PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS 132
Query: 135 LNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLI-------SFNVAR 187
L + +N L + L++L+++ + L +SH+ LI + N R
Sbjct: 133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR 192
Query: 188 N-QFSGMIPL-IYNISSLQYIFIHT-NRFHG--------------SLPLDNGVNLPNLRY 230
+ F + L + IS Y+ T N +G ++P +L LR+
Sbjct: 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRF 252
Query: 231 FSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGT 288
++S N ++ L LQ +++ G + F L L LN+ N L T
Sbjct: 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 337 GSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFL 389
G+N+I+ V++ L L+ L +E NQ++ +PLA L LQ L+L++N +
Sbjct: 137 GNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHI 185
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 337 GSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFL 389
G+N+I+ V++ L L+ L +E NQ++ +PLA L LQ L+L++N +
Sbjct: 160 GNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHI 208
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 337 GSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFL 389
G+N+I+ V++ L L+ L +E NQ++ +PLA L LQ L+L++N +
Sbjct: 160 GNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHI 208
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFS 191
L++L+++ N+L S+ L LQE+ + N+L +++ V L+ +A NQ
Sbjct: 459 LEVLDVSNNNLDS---FSLF-LPRLQELYISRNKLKTLPDASLFPV--LLVMKIASNQLK 512
Query: 192 GMIPLIYN-ISSLQYIFIHTNRFHGSLP 218
+ I++ ++SLQ I++HTN + S P
Sbjct: 513 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 540
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 472 NLKNLVSLDISSNMFSGEI---PTTLGGCTSLEYLGMQDNSFTRSIPST---LSSLKSIT 525
+LK+L LD+S N+ E G SL+ L + N RS+ T L +LK++T
Sbjct: 358 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL-RSMQKTGEILLTLKNLT 416
Query: 526 ELDLSRNNL 534
LD+SRN
Sbjct: 417 SLDISRNTF 425
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 337 GSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFL 389
G+N+I+ V++ L L+ L +E NQ++ +PLA L LQ L+L++N +
Sbjct: 160 GNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHI 208
>pdb|3BTU|A Chain A, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S2) [e351k]
pdb|3BTU|B Chain B, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S2) [e351k]
pdb|3BTU|C Chain C, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S2) [e351k]
pdb|3BTU|D Chain D, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S2) [e351k]
pdb|3BTU|E Chain E, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S2) [e351k]
pdb|3BTU|F Chain F, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S2) [e351k]
Length = 438
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 152 NLSALQEIDVRGNRLGGRIPSTI 174
N+ + ID RGNRLG R+P T+
Sbjct: 239 NIPEQELIDERGNRLGQRVPKTV 261
>pdb|3BTS|A Chain A, Crystal Structure Of A Ternary Complex Of The
Transcriptional Repressor Gal80p (Gal80s0 [g301r]) And
The Acidic Activation Domain Of Gal4p (Aa 854-874) From
Saccharomyces Cerevisiae With Nad
pdb|3BTS|B Chain B, Crystal Structure Of A Ternary Complex Of The
Transcriptional Repressor Gal80p (Gal80s0 [g301r]) And
The Acidic Activation Domain Of Gal4p (Aa 854-874) From
Saccharomyces Cerevisiae With Nad
pdb|3BTV|A Chain A, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S0)-[g301r]
pdb|3BTV|B Chain B, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S0)-[g301r]
Length = 438
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 152 NLSALQEIDVRGNRLGGRIPSTI 174
N+ + ID RGNRLG R+P T+
Sbjct: 239 NIPEQELIDERGNRLGQRVPKTV 261
>pdb|3V2U|A Chain A, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
pdb|3V2U|B Chain B, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
Length = 438
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 152 NLSALQEIDVRGNRLGGRIPSTI 174
N+ + ID RGNRLG R+P T+
Sbjct: 239 NIPEQELIDERGNRLGQRVPKTV 261
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 156 LQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYN-ISSLQYIFIHTNRFH 214
L+E+ + N+L +P S + L+ ++RNQ + I++ ++SLQ I++HTN +
Sbjct: 453 LKELYISRNKLMT-LPDA-SLLPMLLVLKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510
Query: 215 GSLP 218
S P
Sbjct: 511 CSCP 514
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 18/79 (22%)
Query: 473 LKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQD---NSFTRSIPSTLSSLK------- 522
LKNL ++DIS N F +P T ++YL + +S T IP TL L
Sbjct: 386 LKNLTNIDISKNSFHS-MPETCQWPEKMKYLNLSSTRIHSVTGCIPKTLEILDVSNNNLN 444
Query: 523 -------SITELDLSRNNL 534
+ EL +SRN L
Sbjct: 445 LFSLNLPQLKELYISRNKL 463
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 111 FEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRI 170
+ S+N+L++ +P+ L L +L+++ N L ++ L LQE+ ++GN L
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 171 PSTISHVRNLISFNVARNQFSGM 193
P ++ L ++A N + +
Sbjct: 141 PGLLTPTPKLEKLSLANNDLTEL 163
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 91/243 (37%), Gaps = 31/243 (12%)
Query: 87 LTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQL 146
L L NN + D + N+ NNK+ P L+ L+ L +++N LK +L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 147 PASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARN----------QFSGMIPL 196
P + LQE+ V N + S + + +I + N F GM L
Sbjct: 116 PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173
Query: 197 IYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLE 256
Y ++ + LP P+L + GN +T SL NL L
Sbjct: 174 SY----IRIADTNITTIPQGLP-------PSLTELHLDGNKITKVDAASLKGLNNLAKLG 222
Query: 257 INGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRF 316
++ N S + + + +L L+L N L L + ++V+ LH+N
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG-------LADHKYIQVVYLHNNNI 275
Query: 317 GGV 319
+
Sbjct: 276 SAI 278
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 159 IDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLP 218
+D+ NRL +P ++ +R L + N + + N+ LQ + + NR S
Sbjct: 468 LDLSHNRLRA-LPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCNNRLQQSAA 525
Query: 219 LDNGVNLPNLRYFSISGNNLT 239
+ V+ P L ++ GN+L
Sbjct: 526 IQPLVSCPRLVLLNLQGNSLC 546
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 159 IDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLP 218
+D+ NRL +P ++ +R L + N + + N+ LQ + + NR S
Sbjct: 468 LDLSHNRLRA-LPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCNNRLQQSAA 525
Query: 219 LDNGVNLPNLRYFSISGNNLT 239
+ V+ P L ++ GN+L
Sbjct: 526 IQPLVSCPRLVLLNLQGNSLC 546
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 84/212 (39%), Gaps = 29/212 (13%)
Query: 128 NLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAR 187
+L L+IL ++ NH++ + L+ L +++ NRL ++ L +
Sbjct: 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145
Query: 188 NQFSGMIPLIYN-ISSLQYI---------FIHTNRFHG-------SLPLDNGVNLPN--- 227
N + +N I SL+ + +I F G +L + N +PN
Sbjct: 146 NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTP 205
Query: 228 ---LRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGEN 284
L +SGN+L+ S +LQ L + + F LQ+L +NL N
Sbjct: 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265
Query: 285 NLGTGTANDLDFITLLTNCTKLEVLDLHSNRF 316
NL T +D L T LE + LH N +
Sbjct: 266 NL-TLLPHD-----LFTPLHHLERIHLHHNPW 291
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%)
Query: 74 IPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQ 133
+P E+SN L + L+NN S S+ + ++ S N+L P L L+
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 134 ILNIAENHLKGQLPASIGNLSALQEIDVRGNRL 166
+L++ N + + +LSAL + + N L
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 80/210 (38%), Gaps = 24/210 (11%)
Query: 87 LTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQL 146
L L NN + D + N+ NNK+ P L+ L+ L +++N LK +L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 147 PASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARN----------QFSGMIPL 196
P + LQE+ V N + S + + +I + N F GM L
Sbjct: 116 PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173
Query: 197 IYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLE 256
Y ++ + LP P+L + GN +T SL NL L
Sbjct: 174 SY----IRIADTNITTIPQGLP-------PSLTELHLDGNKITKVDAASLKGLNNLAKLG 222
Query: 257 INGNLFSGKVSINFSRLQNLSRLNLGENNL 286
++ N S + + + +L L+L N L
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 86/186 (46%), Gaps = 29/186 (15%)
Query: 174 ISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSI 233
+ ++ NLI + NQ + + PL N++ + + + N PL N + L+ SI
Sbjct: 59 VQYLNNLIGLELKDNQITDLAPL-KNLTKITELELSGN------PLKNVSAIAGLQ--SI 109
Query: 234 SGNNLTGS-LQD--SLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGT 290
+LT + + D L+ +NLQ L ++ N + N S L L+ NL ++G
Sbjct: 110 KTLDLTSTQITDVTPLAGLSNLQVLYLDLNQIT-----NISPLAGLT--NLQYLSIGNAQ 162
Query: 291 ANDLDFITLLTNCTKLEVLDLHSNRFGGVLPF-SLANLSITMTEIANGSNQISGTIPDVI 349
+DL T L N +KL L N+ + P SL NL E+ +NQIS P +
Sbjct: 163 VSDL---TPLANLSKLTTLKADDNKISDISPLASLPNL----IEVHLKNNQISDVSP--L 213
Query: 350 ANLVNL 355
AN NL
Sbjct: 214 ANTSNL 219
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 111 FEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRI 170
+ S+N+L++ +P+ L L +L+++ N L ++ L LQE+ ++GN L
Sbjct: 83 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 141
Query: 171 PSTISHVRNLISFNVARNQFSGM 193
P ++ L ++A N + +
Sbjct: 142 PGLLTPTPKLEKLSLANNNLTEL 164
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 215 GSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQ 274
SLP N P L S+S NNL D+ T+LQ L+++ N + ++ S +
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIP 186
Query: 275 NLSRLNLGENNLGT 288
+L N+ N L T
Sbjct: 187 SLFHANVSYNLLST 200
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 111 FEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRI 170
+ S+N+L++ +P+ L L +L+++ N L ++ L LQE+ ++GN L
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 171 PSTISHVRNLISFNVARNQFSGM 193
P ++ L ++A N + +
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTEL 163
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 111 FEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRI 170
+ S+N+L++ +P+ L L +L+++ N L ++ L LQE+ ++GN L
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 171 PSTISHVRNLISFNVARNQFSGMIP-LIYNISSLQYIFIHTNRFH 214
P ++ L ++A N + + L+ + +L + + N +
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 111 FEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRI 170
+ S+N+L++ +P+ L L +L+++ N L ++ L LQE+ ++GN L
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 171 PSTISHVRNLISFNVARNQFSGM 193
P ++ L ++A N + +
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTEL 163
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 111 FEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRI 170
+ S+N+L++ +P+ L L +L+++ N L ++ L LQE+ ++GN L
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 171 PSTISHVRNLISFNVARNQFSGM 193
P ++ L ++A N + +
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTEL 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,620,318
Number of Sequences: 62578
Number of extensions: 564082
Number of successful extensions: 1879
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 1056
Number of HSP's gapped (non-prelim): 485
length of query: 566
length of database: 14,973,337
effective HSP length: 104
effective length of query: 462
effective length of database: 8,465,225
effective search space: 3910933950
effective search space used: 3910933950
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)