Query 040451
Match_columns 566
No_of_seqs 261 out of 3653
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 08:35:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040451.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040451hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 7.6E-65 1.6E-69 564.1 39.8 552 1-565 37-590 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.8E-54 6E-59 479.6 37.2 511 34-557 93-605 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.4E-37 5.3E-42 292.8 8.4 364 132-554 80-447 (873)
4 KOG0472 Leucine-rich repeat pr 100.0 1.4E-40 3.1E-45 301.2 -13.9 493 34-559 45-541 (565)
5 KOG4194 Membrane glycoprotein 100.0 1.2E-36 2.6E-41 288.2 9.6 392 34-435 52-449 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 2.3E-40 4.9E-45 299.9 -16.1 468 34-535 68-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 4.3E-36 9.3E-41 299.2 -5.3 482 39-557 3-487 (1081)
8 KOG0618 Serine/threonine phosp 100.0 1.6E-34 3.5E-39 288.0 -8.5 463 63-560 3-466 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 1.5E-33 3.2E-38 269.4 -3.9 368 80-511 5-375 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 2.8E-33 6.1E-38 267.5 -2.0 365 130-559 7-375 (1255)
11 PLN03210 Resistant to P. syrin 99.9 4.1E-23 8.8E-28 230.3 23.7 381 6-412 507-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 2.5E-22 5.4E-27 224.0 28.9 128 376-509 777-904 (1153)
13 KOG4237 Extracellular matrix p 99.9 5.7E-24 1.2E-28 193.5 -1.6 400 107-556 68-498 (498)
14 KOG4237 Extracellular matrix p 99.9 4.6E-24 1E-28 194.1 -4.2 253 59-317 68-359 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 5.5E-19 1.2E-23 183.1 16.6 262 227-540 202-463 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 2.5E-18 5.4E-23 178.2 17.4 264 35-373 202-465 (788)
17 cd00116 LRR_RI Leucine-rich re 99.7 5.9E-19 1.3E-23 171.7 1.7 106 453-558 196-319 (319)
18 cd00116 LRR_RI Leucine-rich re 99.7 4.7E-19 1E-23 172.4 -0.0 275 39-340 3-318 (319)
19 PRK15370 E3 ubiquitin-protein 99.7 4.8E-17 1E-21 169.9 14.3 260 23-317 169-428 (754)
20 PRK15370 E3 ubiquitin-protein 99.7 5.9E-17 1.3E-21 169.3 12.0 183 330-535 242-428 (754)
21 KOG0617 Ras suppressor protein 99.7 9.3E-19 2E-23 141.4 -4.7 152 56-211 31-183 (264)
22 KOG0617 Ras suppressor protein 99.7 1.3E-18 2.8E-23 140.5 -4.0 162 34-200 33-195 (264)
23 PLN03150 hypothetical protein; 99.4 1.6E-12 3.5E-17 135.8 10.6 137 2-141 381-526 (623)
24 KOG1259 Nischarin, modulator o 99.2 2.4E-12 5.2E-17 114.1 1.5 208 344-561 205-414 (490)
25 KOG1909 Ran GTPase-activating 99.2 2.8E-12 6.1E-17 116.3 1.7 142 273-437 156-310 (382)
26 KOG1909 Ran GTPase-activating 99.2 5.9E-12 1.3E-16 114.2 3.0 244 148-414 24-311 (382)
27 KOG4658 Apoptotic ATPase [Sign 99.2 1.1E-11 2.4E-16 132.1 5.3 152 54-208 519-675 (889)
28 PF14580 LRR_9: Leucine-rich r 99.2 3.4E-11 7.4E-16 102.6 6.1 125 80-209 17-148 (175)
29 KOG3207 Beta-tubulin folding c 99.2 5.4E-12 1.2E-16 117.7 1.1 206 329-535 121-339 (505)
30 KOG0532 Leucine-rich repeat (L 99.2 6.2E-13 1.3E-17 127.8 -5.6 168 382-559 80-247 (722)
31 KOG0532 Leucine-rich repeat (L 99.2 6.6E-13 1.4E-17 127.6 -5.7 173 34-214 75-247 (722)
32 COG4886 Leucine-rich repeat (L 99.1 5.3E-11 1.2E-15 119.1 7.0 198 62-268 97-295 (394)
33 COG4886 Leucine-rich repeat (L 99.1 6.6E-11 1.4E-15 118.5 7.3 196 333-538 97-293 (394)
34 KOG3207 Beta-tubulin folding c 99.1 1.1E-11 2.3E-16 115.7 -0.3 8 23-30 30-37 (505)
35 KOG4658 Apoptotic ATPase [Sign 99.1 1.2E-10 2.7E-15 124.3 7.6 151 34-187 523-677 (889)
36 PF14580 LRR_9: Leucine-rich r 99.1 9.9E-11 2.1E-15 99.8 5.1 127 54-186 15-148 (175)
37 KOG1259 Nischarin, modulator o 99.0 1E-10 2.2E-15 103.9 2.8 131 128-288 282-413 (490)
38 KOG2120 SCF ubiquitin ligase, 99.0 2.7E-12 5.8E-17 113.7 -7.9 237 19-261 123-374 (419)
39 PLN03150 hypothetical protein; 98.9 1.7E-09 3.7E-14 113.3 7.8 111 453-563 421-532 (623)
40 PF13855 LRR_8: Leucine rich r 98.9 7E-10 1.5E-14 77.6 3.3 61 498-558 1-61 (61)
41 PF13855 LRR_8: Leucine rich r 98.9 1.7E-09 3.6E-14 75.7 3.5 61 474-534 1-61 (61)
42 KOG2120 SCF ubiquitin ligase, 98.7 2.9E-10 6.3E-15 101.0 -5.9 180 131-315 186-374 (419)
43 KOG0531 Protein phosphatase 1, 98.7 2.6E-09 5.7E-14 107.0 -0.2 218 55-286 69-289 (414)
44 KOG0531 Protein phosphatase 1, 98.7 2.5E-09 5.5E-14 107.1 -0.6 201 350-563 115-322 (414)
45 COG5238 RNA1 Ran GTPase-activa 98.4 7.2E-08 1.6E-12 84.9 1.5 256 150-438 26-316 (388)
46 KOG1859 Leucine-rich repeat pr 98.4 7.3E-09 1.6E-13 103.1 -6.0 196 352-558 83-291 (1096)
47 KOG2982 Uncharacterized conser 98.4 6.6E-08 1.4E-12 86.3 0.5 204 351-554 69-287 (418)
48 COG5238 RNA1 Ran GTPase-activa 98.4 5.3E-08 1.1E-12 85.8 -0.6 161 125-286 87-284 (388)
49 KOG1859 Leucine-rich repeat pr 98.3 3.8E-09 8.3E-14 105.1 -9.3 173 35-213 85-291 (1096)
50 KOG4341 F-box protein containi 98.3 2.4E-08 5.3E-13 93.2 -3.6 279 251-533 139-437 (483)
51 KOG4341 F-box protein containi 98.3 2.9E-08 6.3E-13 92.8 -3.8 258 175-436 161-437 (483)
52 KOG2982 Uncharacterized conser 98.3 2E-07 4.4E-12 83.3 1.6 83 81-164 70-156 (418)
53 KOG4579 Leucine-rich repeat (L 98.1 1.3E-07 2.8E-12 74.4 -3.6 103 455-561 58-161 (177)
54 PRK15386 type III secretion pr 98.1 1.1E-05 2.4E-10 77.8 8.3 137 349-508 48-187 (426)
55 KOG1644 U2-associated snRNP A' 98.0 8.6E-06 1.9E-10 69.0 5.2 101 453-555 45-149 (233)
56 KOG3665 ZYG-1-like serine/thre 98.0 1.1E-06 2.4E-11 92.0 -0.7 152 35-189 61-231 (699)
57 PRK15386 type III secretion pr 97.9 5.9E-05 1.3E-09 72.9 9.0 54 376-435 51-104 (426)
58 PF12799 LRR_4: Leucine Rich r 97.9 1.8E-05 3.8E-10 50.4 3.5 34 132-166 3-36 (44)
59 KOG4579 Leucine-rich repeat (L 97.9 1.1E-06 2.4E-11 69.3 -2.6 130 34-167 27-159 (177)
60 PF12799 LRR_4: Leucine Rich r 97.8 2.5E-05 5.5E-10 49.7 3.7 37 106-143 1-37 (44)
61 KOG3665 ZYG-1-like serine/thre 97.8 8.8E-06 1.9E-10 85.4 2.1 134 200-335 147-281 (699)
62 KOG1644 U2-associated snRNP A' 97.8 4.7E-05 1E-09 64.7 5.7 12 224-235 138-149 (233)
63 PF08263 LRRNT_2: Leucine rich 97.4 4.6E-05 1E-09 48.4 0.8 30 1-30 11-43 (43)
64 PF13306 LRR_5: Leucine rich r 97.4 0.00056 1.2E-08 56.2 7.1 37 493-531 76-112 (129)
65 PF13306 LRR_5: Leucine rich r 97.4 0.0006 1.3E-08 56.0 7.2 82 469-554 30-111 (129)
66 KOG2739 Leucine-rich acidic nu 97.3 0.00012 2.6E-09 65.1 2.6 82 126-209 61-151 (260)
67 KOG2739 Leucine-rich acidic nu 97.2 0.00025 5.4E-09 63.1 3.0 40 80-119 63-104 (260)
68 KOG1947 Leucine rich repeat pr 97.2 4.4E-05 9.5E-10 79.0 -2.5 129 80-208 186-328 (482)
69 KOG1947 Leucine rich repeat pr 97.0 8E-05 1.7E-09 77.0 -2.3 221 329-559 188-440 (482)
70 KOG2123 Uncharacterized conser 97.0 3.3E-05 7.2E-10 68.8 -4.7 97 107-207 20-123 (388)
71 KOG2123 Uncharacterized conser 96.7 0.00013 2.7E-09 65.2 -3.0 85 226-319 19-103 (388)
72 KOG3864 Uncharacterized conser 95.8 0.0006 1.3E-08 58.2 -3.5 83 453-535 104-189 (221)
73 KOG3864 Uncharacterized conser 95.6 0.00093 2E-08 57.1 -3.1 83 475-557 102-187 (221)
74 KOG4308 LRR-containing protein 95.4 7.5E-05 1.6E-09 75.0 -12.5 66 471-536 229-304 (478)
75 PF00560 LRR_1: Leucine Rich R 94.7 0.014 3.1E-07 30.6 0.9 12 108-119 2-13 (22)
76 PF00560 LRR_1: Leucine Rich R 94.6 0.016 3.4E-07 30.4 0.8 10 502-511 4-13 (22)
77 KOG4308 LRR-containing protein 94.1 0.00042 9.1E-09 69.8 -10.9 116 347-463 166-303 (478)
78 PF13504 LRR_7: Leucine rich r 93.8 0.031 6.6E-07 27.2 0.8 12 547-558 2-13 (17)
79 KOG0473 Leucine-rich repeat pr 93.7 0.00099 2.1E-08 58.1 -7.6 87 78-167 38-124 (326)
80 KOG0473 Leucine-rich repeat pr 92.5 0.0029 6.2E-08 55.3 -6.6 88 53-143 37-124 (326)
81 smart00370 LRR Leucine-rich re 88.5 0.36 7.9E-06 26.4 1.8 16 522-537 2-17 (26)
82 smart00369 LRR_TYP Leucine-ric 88.5 0.36 7.9E-06 26.4 1.8 16 522-537 2-17 (26)
83 PF13516 LRR_6: Leucine Rich r 82.3 0.73 1.6E-05 24.6 1.0 18 304-321 2-19 (24)
84 KOG4242 Predicted myosin-I-bin 79.0 5.1 0.00011 39.6 6.0 109 452-560 356-482 (553)
85 smart00368 LRR_RI Leucine rich 76.7 1.5 3.3E-05 24.5 1.1 14 546-559 2-15 (28)
86 KOG4242 Predicted myosin-I-bin 76.6 16 0.00034 36.4 8.5 59 355-413 415-480 (553)
87 smart00364 LRR_BAC Leucine-ric 75.2 2 4.4E-05 23.4 1.3 16 547-563 3-18 (26)
88 smart00365 LRR_SD22 Leucine-ri 72.3 3.4 7.4E-05 22.6 1.8 14 522-535 2-15 (26)
89 smart00367 LRR_CC Leucine-rich 61.5 5.7 0.00012 21.6 1.4 13 545-557 1-13 (26)
90 KOG3763 mRNA export factor TAP 61.3 2.9 6.3E-05 42.2 0.2 65 472-536 216-284 (585)
91 KOG3763 mRNA export factor TAP 36.3 16 0.00035 37.1 0.9 81 78-160 214-307 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.6e-65 Score=564.10 Aligned_cols=552 Identities=34% Similarity=0.563 Sum_probs=511.0
Q ss_pred CccCCCCCCCCCCCCCCCCCCCCcccCccCCCCCcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCcccc-
Q 040451 1 MKSQLQDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVS- 79 (566)
Q Consensus 1 ~~~~~~~~~~~~~~w~~~~~~c~w~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~- 79 (566)
||+.+.||.+++.+|+..++||.|.|++|... ++|+.|+|+++++.+.++..+..+++|++|+|++|.+.+.+|..+.
T Consensus 37 ~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~-~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~ 115 (968)
T PLN00113 37 FKSSINDPLKYLSNWNSSADVCLWQGITCNNS-SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFT 115 (968)
T ss_pred HHHhCCCCcccCCCCCCCCCCCcCcceecCCC-CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhc
Confidence 56777789999999999999999999999865 7999999999999999999999999999999999999988987754
Q ss_pred CCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEE
Q 040451 80 NLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEI 159 (566)
Q Consensus 80 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L 159 (566)
.+++|++|++++|.+++..|. ..+++|++|++++|.+.+.+|..++++++|++|++++|.+.+..|..+.++++|++|
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 193 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL 193 (968)
T ss_pred cCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCee
Confidence 899999999999999876664 568999999999999988899999999999999999999988899999999999999
Q ss_pred EeeCCcccccCcccccccCccceeeccccccccch-hhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCcc
Q 040451 160 DVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMI-PLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNL 238 (566)
Q Consensus 160 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 238 (566)
++++|.+.+..|..+.++++|+.|++++|.+.+.. ..+..+++|++|++++|.+.+.+|..+. .+++|++|++++|.+
T Consensus 194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l 272 (968)
T PLN00113 194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKL 272 (968)
T ss_pred eccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh-CCCCCCEEECcCCee
Confidence 99999999889999999999999999999988544 7789999999999999999888887766 899999999999999
Q ss_pred ccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCcccc
Q 040451 239 TGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGG 318 (566)
Q Consensus 239 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 318 (566)
....|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.+
T Consensus 273 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~------~~~~~l~~L~~L~L~~n~l~~ 346 (968)
T PLN00113 273 SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP------VALTSLPRLQVLQLWSNKFSG 346 (968)
T ss_pred eccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC------hhHhcCCCCCEEECcCCCCcC
Confidence 88888889999999999999999988888889999999999999999877655 567789999999999999998
Q ss_pred ccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCcccc
Q 040451 319 VLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLG 398 (566)
Q Consensus 319 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 398 (566)
..|..+... .+++.+++++|.+.+..|..+..+++|+.|++.+|.+.+..+..+..+++|++|++++|.+++..|..+.
T Consensus 347 ~~p~~l~~~-~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~ 425 (968)
T PLN00113 347 EIPKNLGKH-NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT 425 (968)
T ss_pred cCChHHhCC-CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh
Confidence 888887775 6999999999999999999999999999999999999989999999999999999999999988999999
Q ss_pred CCCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCE
Q 040451 399 NLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVS 478 (566)
Q Consensus 399 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~ 478 (566)
.++.|+.|++++|.+++.++..+..+++|+.|++++|.+.+.+|..+. . ..++.|++++|++.+..|..+..+++|+.
T Consensus 426 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~-~~L~~L~ls~n~l~~~~~~~~~~l~~L~~ 503 (968)
T PLN00113 426 KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-S-KRLENLDLSRNQFSGAVPRKLGSLSELMQ 503 (968)
T ss_pred cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-c-ccceEEECcCCccCCccChhhhhhhccCE
Confidence 999999999999999998888888999999999999999877776543 3 34599999999999999999999999999
Q ss_pred EEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcC
Q 040451 479 LDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF 558 (566)
Q Consensus 479 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l 558 (566)
|++++|.+.+.+|+.+..+++|++|+|++|.+++..|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++
T Consensus 504 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583 (968)
T ss_pred EECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence 99999999989999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCC
Q 040451 559 EGKVPIE 565 (566)
Q Consensus 559 ~~~~p~~ 565 (566)
.+.+|..
T Consensus 584 ~~~~p~~ 590 (968)
T PLN00113 584 HGSLPST 590 (968)
T ss_pred eeeCCCc
Confidence 9999963
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.8e-54 Score=479.64 Aligned_cols=511 Identities=29% Similarity=0.474 Sum_probs=467.9
Q ss_pred CcEEEEEcCCCCCcccCcccCc-CCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEE
Q 040451 34 QRVTGLDLRQQSVGGVLSPFVG-NLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFE 112 (566)
Q Consensus 34 ~~v~~l~l~~~~~~~~~~~~l~-~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 112 (566)
.+++.|+|++|.+.+.+|..+. ++++|++|+|++|.+.+.+|. +.+++|++|++++|.+++..|..+..+++|++|+
T Consensus 93 ~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 170 (968)
T PLN00113 93 PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLD 170 (968)
T ss_pred CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEE
Confidence 6899999999999988887654 999999999999999988885 5689999999999999888899999999999999
Q ss_pred ccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeecccccccc
Q 040451 113 ASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSG 192 (566)
Q Consensus 113 L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 192 (566)
+++|.+.+.+|..++++++|++|++++|.+++..|..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+
T Consensus 171 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 250 (968)
T PLN00113 171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG 250 (968)
T ss_pred CccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecc
Confidence 99999988899999999999999999999998899999999999999999999998999999999999999999999875
Q ss_pred ch-hhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEeccccccccccccccc
Q 040451 193 MI-PLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFS 271 (566)
Q Consensus 193 ~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 271 (566)
.. ..+..+++|++|++++|.+.+.+|..+. .+++|++|++++|.+....|..+..+++|+.|++++|.+.+..+..+.
T Consensus 251 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 329 (968)
T PLN00113 251 PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT 329 (968)
T ss_pred ccChhHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh
Confidence 54 7889999999999999999888887776 889999999999999988888899999999999999999988888899
Q ss_pred CCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhc
Q 040451 272 RLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIAN 351 (566)
Q Consensus 272 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~ 351 (566)
.+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.+..|..+... ..++.+++.+|.+.+..|..+..
T Consensus 330 ~l~~L~~L~L~~n~l~~~~p------~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~ 402 (968)
T PLN00113 330 SLPRLQVLQLWSNKFSGEIP------KNLGKHNNLTVLDLSTNNLTGEIPEGLCSS-GNLFKLILFSNSLEGEIPKSLGA 402 (968)
T ss_pred cCCCCCEEECcCCCCcCcCC------hHHhCCCCCcEEECCCCeeEeeCChhHhCc-CCCCEEECcCCEecccCCHHHhC
Confidence 99999999999999876655 567788999999999999998888877764 58999999999999999999999
Q ss_pred cCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEE
Q 040451 352 LVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLT 431 (566)
Q Consensus 352 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ 431 (566)
+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+.+|..+ ..++|+.|+
T Consensus 403 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ 481 (968)
T PLN00113 403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLD 481 (968)
T ss_pred CCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEE
Confidence 9999999999999998899999999999999999999998888888899999999999999998887765 458999999
Q ss_pred ccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCccc
Q 040451 432 TRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT 511 (566)
Q Consensus 432 l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 511 (566)
+++|.+.+..|..+..+..+ +.|++++|.+.+..|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|+++
T Consensus 482 ls~n~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 560 (968)
T PLN00113 482 LSRNQFSGAVPRKLGSLSEL-MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLS 560 (968)
T ss_pred CcCCccCCccChhhhhhhcc-CEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCccc
Confidence 99999998888888877766 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCc
Q 040451 512 RSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNH 557 (566)
Q Consensus 512 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~ 557 (566)
+.+|..+..+++|+.|++++|++.+.+|.. ..+..+....+.+|+
T Consensus 561 ~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 561 GEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNI 605 (968)
T ss_pred ccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCc
Confidence 999999999999999999999999888865 334455555566664
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-37 Score=292.81 Aligned_cols=364 Identities=22% Similarity=0.233 Sum_probs=229.0
Q ss_pred CCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccch-hhhhCCCCCcEEEccc
Q 040451 132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMI-PLIYNISSLQYIFIHT 210 (566)
Q Consensus 132 L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~ 210 (566)
-+.|++++|++....+..|.++++|+.+++.+|.++ .+|.......+|+.|++.+|.|..+. ..+..++.|+.||++.
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 345777777777666677777777777777777776 56665555566777777777777666 6666677777777777
Q ss_pred CcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCC
Q 040451 211 NRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGT 290 (566)
Q Consensus 211 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 290 (566)
|.++ .++..-+..-+++++|++++|.|+......|..+.+|.+|.+++|+++...+..|+.+++|+.|++..|.+....
T Consensus 159 N~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 159 NLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred chhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence 7776 555554445567888888888888777777777778888888888887666666777777777777776664432
Q ss_pred CCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccch
Q 040451 291 ANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIP 370 (566)
Q Consensus 291 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 370 (566)
. ..|.++++|+.|.+..|.+.. .-...|..+.++++|++..|++...-.
T Consensus 238 ~------ltFqgL~Sl~nlklqrN~I~k-------------------------L~DG~Fy~l~kme~l~L~~N~l~~vn~ 286 (873)
T KOG4194|consen 238 G------LTFQGLPSLQNLKLQRNDISK-------------------------LDDGAFYGLEKMEHLNLETNRLQAVNE 286 (873)
T ss_pred h------hhhcCchhhhhhhhhhcCccc-------------------------ccCcceeeecccceeecccchhhhhhc
Confidence 2 344555555555555554431 112334555566666666666555444
Q ss_pred hhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCC
Q 040451 371 LAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIIT 450 (566)
Q Consensus 371 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 450 (566)
..+.++.+|+.|+++.|.|...-+......++|++|+|++|+++...+.+|..+..|+.|+++.|.+
T Consensus 287 g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi------------- 353 (873)
T KOG4194|consen 287 GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSI------------- 353 (873)
T ss_pred ccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccch-------------
Confidence 5555556666666666655544455555555555555555555544445555555555555555554
Q ss_pred cCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCC---cCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEE
Q 040451 451 LPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIP---TTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITEL 527 (566)
Q Consensus 451 ~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 527 (566)
.......|..+++|++||+++|.++..+. ..|.++++|++|++.+|++....-..|..++.|+.|
T Consensus 354 ------------~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~L 421 (873)
T KOG4194|consen 354 ------------DHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHL 421 (873)
T ss_pred ------------HHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCccccee
Confidence 43333456666666666666666654432 345666666666666666664444556666666777
Q ss_pred eCCCCcccccCCccCcCCCCCCeeeCC
Q 040451 528 DLSRNNLSGHIPQYLENLSFLSFLNLS 554 (566)
Q Consensus 528 ~l~~n~~~~~~~~~l~~~~~L~~L~l~ 554 (566)
||.+|.|..+.|+.|..+ .|++|-+.
T Consensus 422 dL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 422 DLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred cCCCCcceeecccccccc-hhhhhhhc
Confidence 777666666666666655 56666554
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.4e-40 Score=301.22 Aligned_cols=493 Identities=24% Similarity=0.367 Sum_probs=298.5
Q ss_pred CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEc
Q 040451 34 QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEA 113 (566)
Q Consensus 34 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 113 (566)
.....+.++.|.+.. +.+.+.++..+++|+++.|+.. ..|.+++++..++.++.++|.++ .+|+.+..+..|+.++.
T Consensus 45 v~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC 121 (565)
T ss_pred cchhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence 456667888888763 4556788888899999888888 88888888888899999998887 78888888889999999
Q ss_pred cCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccc
Q 040451 114 SNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGM 193 (566)
Q Consensus 114 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 193 (566)
++|.+. .++++++.+..|+.++..+|+++ ..|.++..+.+|..+++.+|++. ..|...-+++.|+++|...|.+...
T Consensus 122 s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~tl 198 (565)
T KOG0472|consen 122 SSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLETL 198 (565)
T ss_pred ccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhhcC
Confidence 988887 67888888888999988888888 78888888888888999888887 4555444588899999888888888
Q ss_pred hhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCC
Q 040451 194 IPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRL 273 (566)
Q Consensus 194 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 273 (566)
++.++.+.+|+-|+++.|.+. .+| .+. .|..|++++++.|.+.-...+...+++++..||+..|+++ ..|..+.-+
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~-~lP-ef~-gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clL 274 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIR-FLP-EFP-GCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLL 274 (565)
T ss_pred ChhhcchhhhHHHHhhhcccc-cCC-CCC-ccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHh
Confidence 888888888888888888887 666 444 7888888888888887444444557888888888888887 566667778
Q ss_pred CCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccC
Q 040451 274 QNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLV 353 (566)
Q Consensus 274 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~ 353 (566)
.+|++|++++|.++..++ .++++ +|+.|-+.+|.+...--+.+..- .-+.+..-...+... .++.-
T Consensus 275 rsL~rLDlSNN~is~Lp~-------sLgnl-hL~~L~leGNPlrTiRr~ii~~g--T~~vLKyLrs~~~~d---glS~s- 340 (565)
T KOG0472|consen 275 RSLERLDLSNNDISSLPY-------SLGNL-HLKFLALEGNPLRTIRREIISKG--TQEVLKYLRSKIKDD---GLSQS- 340 (565)
T ss_pred hhhhhhcccCCccccCCc-------ccccc-eeeehhhcCCchHHHHHHHHccc--HHHHHHHHHHhhccC---CCCCC-
Confidence 888888888888877665 45666 78888888887652211111110 000000001111000 00000
Q ss_pred CCCEEecCCcc-ccccchhhccCCCCCCEEEccCCcccccCCccccCCCC---CCeEecccCcceecCCccccCCCCCcE
Q 040451 354 NLNALGVESNQ-LAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTL---LTQLILEVNNLQGKIPPSIGNCQNLIL 429 (566)
Q Consensus 354 ~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~~~l~~~~~~~~~~~~~L~~ 429 (566)
+.=.-..-. ..+.. .+....-+.+.|++++-+++ ..|.......+ ....+++.|++. ++|..+..+..+.+
T Consensus 341 --e~~~e~~~t~~~~~~-~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT 415 (565)
T KOG0472|consen 341 --EGGTETAMTLPSESF-PDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVT 415 (565)
T ss_pred --cccccccCCCCCCcc-cchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHH
Confidence 000000000 00000 01112233444444444444 22222211111 334444444444 33333333333322
Q ss_pred EEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCc
Q 040451 430 LTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNS 509 (566)
Q Consensus 430 L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 509 (566)
.-+..++..+.+|..+..++.+ ..|++++|.+. .+|..++.+..|+.|+++.|++. ..|.++-.+..++.+-.++|+
T Consensus 416 ~l~lsnn~isfv~~~l~~l~kL-t~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nq 492 (565)
T KOG0472|consen 416 DLVLSNNKISFVPLELSQLQKL-TFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQ 492 (565)
T ss_pred HHHhhcCccccchHHHHhhhcc-eeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccc
Confidence 2222222222333333333333 44444444444 33444444555555555555554 455544444445555555555
Q ss_pred ccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCc
Q 040451 510 FTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 559 (566)
Q Consensus 510 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~ 559 (566)
+....++++.++.+|.+||+.+|.+. .+|..++++.+|++|+++||++.
T Consensus 493 i~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 493 IGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 55444445555555555555555555 44455555555555555555554
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-36 Score=288.16 Aligned_cols=392 Identities=20% Similarity=0.226 Sum_probs=330.8
Q ss_pred CcEEEEEcCCCCCcccCcccC-cCC-CCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEE
Q 040451 34 QRVTGLDLRQQSVGGVLSPFV-GNL-SFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKF 111 (566)
Q Consensus 34 ~~v~~l~l~~~~~~~~~~~~l-~~l-~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 111 (566)
...+-+|.++..+...--..+ +-+ +..+.|++++|.+...-+..|.++++|+.+++.+|.++ .+|.......+|+.|
T Consensus 52 c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L 130 (873)
T KOG4194|consen 52 CNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKL 130 (873)
T ss_pred CCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEE
Confidence 467778888777653211112 222 34678999999998666667889999999999999988 678777777889999
Q ss_pred EccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccc
Q 040451 112 EASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFS 191 (566)
Q Consensus 112 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 191 (566)
+|.+|.|...-.+.+..++.||.|||+.|.|+..-...+..-.++++|++++|+|+..-...|..+.+|..|.+++|+++
T Consensus 131 ~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit 210 (873)
T KOG4194|consen 131 DLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT 210 (873)
T ss_pred eeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc
Confidence 99999998766778889999999999999998555556667789999999999999777788999999999999999999
Q ss_pred cch-hhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccc
Q 040451 192 GMI-PLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINF 270 (566)
Q Consensus 192 ~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 270 (566)
.++ ..+.++++|+.|++..|.+. .+....|++++.|+.+.+..|++......+|..+.++++|+++.|++......++
T Consensus 211 tLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~l 289 (873)
T KOG4194|consen 211 TLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWL 289 (873)
T ss_pred ccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccc
Confidence 998 56666999999999999886 4445556689999999999999988888889999999999999999988888899
Q ss_pred cCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhh
Q 040451 271 SRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIA 350 (566)
Q Consensus 271 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~ 350 (566)
.++..|+.|+++.|.+...... ..+.+++|++|++++|+++...+..+..+ ..|++|.++.|.+.......|.
T Consensus 290 fgLt~L~~L~lS~NaI~rih~d------~WsftqkL~~LdLs~N~i~~l~~~sf~~L-~~Le~LnLs~Nsi~~l~e~af~ 362 (873)
T KOG4194|consen 290 FGLTSLEQLDLSYNAIQRIHID------SWSFTQKLKELDLSSNRITRLDEGSFRVL-SQLEELNLSHNSIDHLAEGAFV 362 (873)
T ss_pred cccchhhhhccchhhhheeecc------hhhhcccceeEeccccccccCChhHHHHH-HHhhhhcccccchHHHHhhHHH
Confidence 9999999999999999888774 44568899999999999997777777776 4899999999999887778899
Q ss_pred ccCCCCEEecCCccccccc---hhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCC
Q 040451 351 NLVNLNALGVESNQLAGTI---PLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNL 427 (566)
Q Consensus 351 ~l~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L 427 (566)
.+.+|++|+++.|.+...+ ...|.++++|++|.+.||++..+....|..++.|++|+|.+|.|...-+.+|..+ +|
T Consensus 363 ~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~L 441 (873)
T KOG4194|consen 363 GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-EL 441 (873)
T ss_pred HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hh
Confidence 9999999999999887554 3467789999999999999996667789999999999999999998999999998 88
Q ss_pred cEEEccCC
Q 040451 428 ILLTTRKN 435 (566)
Q Consensus 428 ~~L~l~~~ 435 (566)
+.|.++.-
T Consensus 442 k~Lv~nSs 449 (873)
T KOG4194|consen 442 KELVMNSS 449 (873)
T ss_pred hhhhhccc
Confidence 88887654
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.3e-40 Score=299.88 Aligned_cols=468 Identities=22% Similarity=0.315 Sum_probs=369.3
Q ss_pred CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEc
Q 040451 34 QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEA 113 (566)
Q Consensus 34 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 113 (566)
...++++++.|.+. .+|++++++..++.++.+.|++. .+|..++....++.+++++|.+. .++..++.+..|+.++.
T Consensus 68 ~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDA 144 (565)
T ss_pred cceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhc
Confidence 45788899999987 58889999999999999999998 99999999999999999999988 78999999999999999
Q ss_pred cCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccc
Q 040451 114 SNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGM 193 (566)
Q Consensus 114 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 193 (566)
.+|++. ..|.++..+.+|..+++.+|+++ ..|+..-+++.|++||...|.+. .+|..++.+..|..|++..|++...
T Consensus 145 ~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~l 221 (565)
T KOG0472|consen 145 TNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRFL 221 (565)
T ss_pred cccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccccC
Confidence 999998 78999999999999999999999 56666666999999999999887 8999999999999999999999877
Q ss_pred hhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCC
Q 040451 194 IPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRL 273 (566)
Q Consensus 194 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 273 (566)
+ .+..|+.|+++.+..|.+. .+|....++++.+..|++..|+++ ..|+.+.-+.+|+.||+++|.++ ..|..++++
T Consensus 222 P-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl 297 (565)
T KOG0472|consen 222 P-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL 297 (565)
T ss_pred C-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc
Confidence 6 7888999999999999887 888888889999999999999999 67888888999999999999998 677789999
Q ss_pred CCCCEEECCCCcCCCCCCCChhhhhhhcCCC---CCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhh
Q 040451 274 QNLSRLNLGENNLGTGTANDLDFITLLTNCT---KLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIA 350 (566)
Q Consensus 274 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~---~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~ 350 (566)
+|+.|.+.+|.+.+.... +-+++ -|++|+= .+.+..+..-.. .+...-+. .. .......
T Consensus 298 -hL~~L~leGNPlrTiRr~-------ii~~gT~~vLKyLrs---~~~~dglS~se~--~~e~~~t~----~~-~~~~~~~ 359 (565)
T KOG0472|consen 298 -HLKFLALEGNPLRTIRRE-------IISKGTQEVLKYLRS---KIKDDGLSQSEG--GTETAMTL----PS-ESFPDIY 359 (565)
T ss_pred -eeeehhhcCCchHHHHHH-------HHcccHHHHHHHHHH---hhccCCCCCCcc--cccccCCC----CC-Ccccchh
Confidence 999999999987653221 11111 0111100 000000000000 00000000 00 1111233
Q ss_pred ccCCCCEEecCCccccccchhhcc--CCCCCCEEEccCCcccccCCccccCCCCCCe-EecccCcceecCCccccCCCCC
Q 040451 351 NLVNLNALGVESNQLAGTIPLAIG--ELKSLQMLFLNENFLRGTIPSSLGNLTLLTQ-LILEVNNLQGKIPPSIGNCQNL 427 (566)
Q Consensus 351 ~l~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~-L~l~~~~l~~~~~~~~~~~~~L 427 (566)
.+.+.+.|++++-+++..-.+.|. .-.-.+.+++++|++. ++|..+..++.+.+ +.+++|.+. .+|..++.+++|
T Consensus 360 ~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kL 437 (565)
T KOG0472|consen 360 AIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKL 437 (565)
T ss_pred hhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcc
Confidence 456678888888777754334443 2234778899999887 77877777776655 455555555 777888889999
Q ss_pred cEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCC
Q 040451 428 ILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQD 507 (566)
Q Consensus 428 ~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 507 (566)
+.|++++|.+. .+|..++.+..+ +.++++.|+|. ..|..+.....++.+-.++|.+....++.+.+|..|.+||+.+
T Consensus 438 t~L~L~NN~Ln-~LP~e~~~lv~L-q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n 514 (565)
T KOG0472|consen 438 TFLDLSNNLLN-DLPEEMGSLVRL-QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN 514 (565)
T ss_pred eeeecccchhh-hcchhhhhhhhh-heecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC
Confidence 99999988887 888888888885 89999999888 5677777777788888888998855666799999999999999
Q ss_pred CcccccCCcCCCCCCCCCEEeCCCCccc
Q 040451 508 NSFTRSIPSTLSSLKSITELDLSRNNLS 535 (566)
Q Consensus 508 ~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 535 (566)
|++. .+|..++++.+|+.|++.+|+|.
T Consensus 515 Ndlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 515 NDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred Cchh-hCChhhccccceeEEEecCCccC
Confidence 9998 68889999999999999999998
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-36 Score=299.20 Aligned_cols=482 Identities=26% Similarity=0.308 Sum_probs=373.6
Q ss_pred EEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcc
Q 040451 39 LDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKL 118 (566)
Q Consensus 39 l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 118 (566)
+|.+...+. .+|..+..-..++.|+++.|.+...-.+.+.+.-+|++||+++|.+. ..|..+..+.+|+.|+++.|.+
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i 80 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI 80 (1081)
T ss_pred cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH
Confidence 555665555 45655655666888999888766321233444555999999999888 6788899999999999999998
Q ss_pred cccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhh
Q 040451 119 EAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIY 198 (566)
Q Consensus 119 ~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~ 198 (566)
. ..|.+..++.+|++++|..|... .+|..+..+++|++|+++.|.+. ..|..+..+..+..+..++|... ..++
T Consensus 81 ~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~---~~lg 154 (1081)
T KOG0618|consen 81 R-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKI---QRLG 154 (1081)
T ss_pred h-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhh---hhhc
Confidence 7 67888899999999999999988 78999999999999999999987 78888888899999998888211 1222
Q ss_pred CCCCCcEEEcccCcCcccCCccccCCCCCcc-EEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCC
Q 040451 199 NISSLQYIFIHTNRFHGSLPLDNGVNLPNLR-YFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLS 277 (566)
Q Consensus 199 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 277 (566)
.. .++++++..+.+.+.++.... .++ .+++.+|.+. . ..+..++.|+.+....|.+.... ..-++++
T Consensus 155 ~~-~ik~~~l~~n~l~~~~~~~i~----~l~~~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~ 222 (1081)
T KOG0618|consen 155 QT-SIKKLDLRLNVLGGSFLIDIY----NLTHQLDLRYNEME-V--LDLSNLANLEVLHCERNQLSELE----ISGPSLT 222 (1081)
T ss_pred cc-cchhhhhhhhhcccchhcchh----hhheeeecccchhh-h--hhhhhccchhhhhhhhcccceEE----ecCcchh
Confidence 22 278888888888777766544 444 4999999887 2 23567788888888888765322 2456888
Q ss_pred EEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCE
Q 040451 278 RLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNA 357 (566)
Q Consensus 278 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~ 357 (566)
.|+.+.|.+..... -....+|++++++.++++.. |.++... .+++.+....|.++ .+|..+....+|+.
T Consensus 223 ~L~a~~n~l~~~~~--------~p~p~nl~~~dis~n~l~~l-p~wi~~~-~nle~l~~n~N~l~-~lp~ri~~~~~L~~ 291 (1081)
T KOG0618|consen 223 ALYADHNPLTTLDV--------HPVPLNLQYLDISHNNLSNL-PEWIGAC-ANLEALNANHNRLV-ALPLRISRITSLVS 291 (1081)
T ss_pred eeeeccCcceeecc--------ccccccceeeecchhhhhcc-hHHHHhc-ccceEecccchhHH-hhHHHHhhhhhHHH
Confidence 88988888763322 22346899999999998844 4666654 69999999999985 67888888899999
Q ss_pred EecCCccccccchhhccCCCCCCEEEccCCcccccCCccc-cCCC-CCCeEecccCcceecCCccccCCCCCcEEEccCC
Q 040451 358 LGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSL-GNLT-LLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKN 435 (566)
Q Consensus 358 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~-~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 435 (566)
+....|.+. -++....++.+|++|++..|++. .+|..+ .... .|+.++.+.+++.......=.....|+.|.+.+|
T Consensus 292 l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN 369 (1081)
T KOG0618|consen 292 LSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN 369 (1081)
T ss_pred HHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC
Confidence 999999887 45667777899999999999988 555533 3333 3778888888876332222234567999999999
Q ss_pred cccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCC
Q 040451 436 KLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIP 515 (566)
Q Consensus 436 ~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 515 (566)
.+++..-..+-....+ ++|++++|++.......+.+++.|++|++++|+++ .+|+.+..+..|++|....|.+. .+|
T Consensus 370 ~Ltd~c~p~l~~~~hL-KVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP 446 (1081)
T KOG0618|consen 370 HLTDSCFPVLVNFKHL-KVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP 446 (1081)
T ss_pred cccccchhhhccccce-eeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech
Confidence 9998777766666666 99999999998665567899999999999999999 78899999999999999999999 678
Q ss_pred cCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCc
Q 040451 516 STLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNH 557 (566)
Q Consensus 516 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~ 557 (566)
-+..+++|+.+|++.|.++..........+.|++||++||.
T Consensus 447 -e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 447 -ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred -hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 77889999999999999986543332333899999999997
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=1.6e-34 Score=287.99 Aligned_cols=463 Identities=26% Similarity=0.333 Sum_probs=379.1
Q ss_pred EEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcC
Q 040451 63 INLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHL 142 (566)
Q Consensus 63 L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i 142 (566)
++++.+++. .+|..+.....+..|+++.|.+-....+.+.++.+|+.|++++|++. ..|..+..+.+|+.|+++.|.|
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i 80 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI 80 (1081)
T ss_pred cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH
Confidence 455555555 67766655556899999999776444566778888999999999987 7888999999999999999999
Q ss_pred CCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCcccCCcccc
Q 040451 143 KGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNG 222 (566)
Q Consensus 143 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 222 (566)
. ..|.+..++.+|+++.|.+|.+. .+|..+..+++|+.|+++.|.+...+..+..+..++.+..++|.....++.
T Consensus 81 ~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~--- 155 (1081)
T KOG0618|consen 81 R-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ--- 155 (1081)
T ss_pred h-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc---
Confidence 9 78899999999999999999987 889999999999999999999999988888888999999988833322222
Q ss_pred CCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcC
Q 040451 223 VNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTN 302 (566)
Q Consensus 223 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 302 (566)
..++.+++..+.+....+..+..+.. .|++.+|.+. ...+..+++|+.+....|++..... .
T Consensus 156 ---~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~~----------~ 217 (1081)
T KOG0618|consen 156 ---TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELEI----------S 217 (1081)
T ss_pred ---ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEEe----------c
Confidence 12778888888777666666666555 6999999875 3346788889999998888765433 4
Q ss_pred CCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEE
Q 040451 303 CTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQML 382 (566)
Q Consensus 303 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 382 (566)
-++++.|..+.|.++...+ ...+.+++.++++.+++.+ +|+++..+.+|+.+....|.++ ..+..+....+|+.|
T Consensus 218 g~~l~~L~a~~n~l~~~~~---~p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l 292 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLTTLDV---HPVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSL 292 (1081)
T ss_pred CcchheeeeccCcceeecc---ccccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHH
Confidence 4799999999998873322 3345689999999999985 5699999999999999999996 667777788999999
Q ss_pred EccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCC-CcEEEccCCcccccCchhhhccCCcCcEEEccCCc
Q 040451 383 FLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQN-LILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNL 461 (566)
Q Consensus 383 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~-L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~ 461 (566)
.+..|.+. -+|.....++.|++|++..|++....+..+..... |..++.+.+++. ..|..-......++.|.+.+|.
T Consensus 293 ~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~ 370 (1081)
T KOG0618|consen 293 SAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNH 370 (1081)
T ss_pred Hhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCc
Confidence 99999998 67778888999999999999998333333344433 788888888876 5554444444556889999999
Q ss_pred ceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCcc
Q 040451 462 LNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQY 541 (566)
Q Consensus 462 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 541 (566)
+++.....+.++++||.|++++|++.......+.+++.|++|+||||+++ .+|..+..++.|++|...+|.+. ..| .
T Consensus 371 Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e 447 (1081)
T KOG0618|consen 371 LTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-E 447 (1081)
T ss_pred ccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-h
Confidence 99887778999999999999999998555567899999999999999999 58899999999999999999999 667 6
Q ss_pred CcCCCCCCeeeCCCCcCcc
Q 040451 542 LENLSFLSFLNLSYNHFEG 560 (566)
Q Consensus 542 l~~~~~L~~L~l~~~~l~~ 560 (566)
+.++++|+.+|+|.|.++.
T Consensus 448 ~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 448 LAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred hhhcCcceEEecccchhhh
Confidence 7899999999999999874
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.5e-33 Score=269.42 Aligned_cols=368 Identities=23% Similarity=0.342 Sum_probs=229.0
Q ss_pred CCCCCCEEeCCCccCC-CCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCE
Q 040451 80 NLFRLQNLTLTNNYFS-GKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQE 158 (566)
Q Consensus 80 ~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~ 158 (566)
-++..+-+|+++|.++ +..|..+..++.++.|.|...++. .+|+.++.+.+|++|.+++|+++ .+-..+..++.|+.
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRS 82 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHH
Confidence 3455666777888776 446666667777777777666665 56666777777777777777666 45555666666777
Q ss_pred EEeeCCcccc-cCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCc
Q 040451 159 IDVRGNRLGG-RIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNN 237 (566)
Q Consensus 159 L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 237 (566)
+.++.|++.. -+|..+-++..|+.|+++.|++...+..+..-+++-.|++++|++. .||...
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~l---------------- 145 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSL---------------- 145 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchH----------------
Confidence 7766666542 3445555666666666666666655554444444555555555544 444433
Q ss_pred cccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccc
Q 040451 238 LTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFG 317 (566)
Q Consensus 238 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 317 (566)
+.++..|-.|++++|++. ..|.....+..|++|.+++|.+..... ..+..+.+|++|.+++.+-+
T Consensus 146 --------finLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQL------rQLPsmtsL~vLhms~TqRT 210 (1255)
T KOG0444|consen 146 --------FINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQL------RQLPSMTSLSVLHMSNTQRT 210 (1255)
T ss_pred --------HHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHH------hcCccchhhhhhhcccccch
Confidence 334444445555555554 333334455555555555555432211 23344455666666655422
Q ss_pred cccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccc
Q 040451 318 GVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSL 397 (566)
Q Consensus 318 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 397 (566)
- .-+|..+..+.+|..++++.|.+. ..|..+..+++|+.|++++|+++ .+....
T Consensus 211 l------------------------~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~ 264 (1255)
T KOG0444|consen 211 L------------------------DNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTE 264 (1255)
T ss_pred h------------------------hcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccH
Confidence 0 134455666677777777777766 66777777777777777777776 444445
Q ss_pred cCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCccccc-CchhhhccCCcCcEEEccCCcceecCCccccCCCCC
Q 040451 398 GNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGT-VPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNL 476 (566)
Q Consensus 398 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L 476 (566)
....+|++|+++.|+++ .+|.++..++.|+.|...+|+++.+ +|..++++..+ +++..++|.+. ..|+.++.|..|
T Consensus 265 ~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L-evf~aanN~LE-lVPEglcRC~kL 341 (1255)
T KOG0444|consen 265 GEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL-EVFHAANNKLE-LVPEGLCRCVKL 341 (1255)
T ss_pred HHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh-HHHHhhccccc-cCchhhhhhHHH
Confidence 55667777777777777 6777777777777777777776532 55555555555 66666666665 567777777777
Q ss_pred CEEEccCCcccccCCcCCcCCCCCcEEeCCCCccc
Q 040451 477 VSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT 511 (566)
Q Consensus 477 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 511 (566)
+.|.++.|.+. .+|+++.-++.|+.||+++|+..
T Consensus 342 ~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 342 QKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred HHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 77777777776 67777777777777777777655
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2.8e-33 Score=267.48 Aligned_cols=365 Identities=23% Similarity=0.348 Sum_probs=221.8
Q ss_pred CCCCEEecccCcCC-CCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEc
Q 040451 130 LMLQILNIAENHLK-GQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFI 208 (566)
Q Consensus 130 ~~L~~L~l~~~~i~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l 208 (566)
+-.+-.|+++|.++ +..|.....|++++.|.+...++. .+|+.++.+.+|++|.++.|++..+...+..++.|+.+.+
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIV 85 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhh
Confidence 33444555555555 345666666666666666666554 5566666666666666666666655555666666666666
Q ss_pred ccCcCc-ccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCC
Q 040451 209 HTNRFH-GSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLG 287 (566)
Q Consensus 209 ~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 287 (566)
+.|++. .-+|..++ ++..|+.|++++|.+. ..|..+...+++-.|++++|.+..++...|.++..|-.|++++|.+.
T Consensus 86 R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIF-RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred hccccccCCCCchhc-ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh
Confidence 666653 24677777 7788888888888877 66777777778888888888887555555667777777777777765
Q ss_pred CCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCcccc-
Q 040451 288 TGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLA- 366 (566)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~- 366 (566)
..++ .+..+.+|+.|.+++|.+.-. . -..+..+.+|+.|.+++.+-+
T Consensus 164 ~LPP-------Q~RRL~~LqtL~Ls~NPL~hf---Q----------------------LrQLPsmtsL~vLhms~TqRTl 211 (1255)
T KOG0444|consen 164 MLPP-------QIRRLSMLQTLKLSNNPLNHF---Q----------------------LRQLPSMTSLSVLHMSNTQRTL 211 (1255)
T ss_pred hcCH-------HHHHHhhhhhhhcCCChhhHH---H----------------------HhcCccchhhhhhhcccccchh
Confidence 5544 344555666666666653200 0 012334556666666665443
Q ss_pred ccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhh
Q 040451 367 GTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLL 446 (566)
Q Consensus 367 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 446 (566)
..+|..+..+.+|..+|++.|.+. ..|+.+.++++|+.|++++|+|+ ++........+|++|+++.|.++
T Consensus 212 ~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-------- 281 (1255)
T KOG0444|consen 212 DNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-------- 281 (1255)
T ss_pred hcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc--------
Confidence 235666666667777777777666 66666666777777777777666 33334444455666666666655
Q ss_pred ccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCccccc-CCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCC
Q 040451 447 HIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGE-IPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSIT 525 (566)
Q Consensus 447 ~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 525 (566)
.+|.++++++.|+.|++.+|+++-. +|.+++.+..|+++...+|.+. ..|+++..|+.|+
T Consensus 282 ------------------~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~ 342 (1255)
T KOG0444|consen 282 ------------------VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQ 342 (1255)
T ss_pred ------------------cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHH
Confidence 4455555555555555555555422 4555555555555555555554 4555555556666
Q ss_pred EEeCCCCcccccCCccCcCCCCCCeeeCCCCcCc
Q 040451 526 ELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 559 (566)
Q Consensus 526 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~ 559 (566)
.|.|++|.+. ++|+.+.-++-|+.||+..|+=.
T Consensus 343 kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 343 KLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred Hhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 6666665555 45555555555556665555433
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=4.1e-23 Score=230.25 Aligned_cols=381 Identities=15% Similarity=0.163 Sum_probs=238.5
Q ss_pred CCCCCCCCCCCCCCCCCCcccCccCCCCCcEEEEEcCCCCCc--ccCcccCcCCCCCcEEEcCCCCC------ccccCcc
Q 040451 6 QDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVG--GVLSPFVGNLSFPRSINLPNKSF------RGEIPHE 77 (566)
Q Consensus 6 ~~~~~~~~~w~~~~~~c~w~~~~~~~~~~~v~~l~l~~~~~~--~~~~~~l~~l~~L~~L~L~~~~~------~~~~~~~ 77 (566)
.+|+++..-|++.+.+......+ +. .+|+.+.+....+. ...+.+|.+|++|+.|.+..+.. ...+|..
T Consensus 507 ~~~~~r~~l~~~~di~~vl~~~~--g~-~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~ 583 (1153)
T PLN03210 507 NEPGEREFLVDAKDICDVLEDNT--GT-KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEG 583 (1153)
T ss_pred CCCCcceeEeCHHHHHHHHHhCc--cc-ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcc
Confidence 47888888887654332222211 11 45666655433332 12345688899999998865532 2346666
Q ss_pred ccCCC-CCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCC
Q 040451 78 VSNLF-RLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSAL 156 (566)
Q Consensus 78 ~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L 156 (566)
+..++ +|+.|++.++.+. .+|..+ ...+|++|++.++.+. .++..+..+++|++|+++++.....+| .+..+++|
T Consensus 584 ~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~L 659 (1153)
T PLN03210 584 FDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNL 659 (1153)
T ss_pred hhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcc
Confidence 66654 6899999988876 566666 5688999999998887 677788889999999998875443555 47788899
Q ss_pred CEEEeeCCcccccCcccccccCccceeeccccc-cccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccC
Q 040451 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVARNQ-FSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISG 235 (566)
Q Consensus 157 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 235 (566)
++|++++|.....+|..+..+++|+.|++++|. +...+.. .++++|+.|++++|.....+|. ...+|+.|++++
T Consensus 660 e~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~ 734 (1153)
T PLN03210 660 ETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-INLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDE 734 (1153)
T ss_pred cEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-CCCCCCCEEeCCCCCCcccccc----ccCCcCeeecCC
Confidence 999998887656788888888999999998875 3333332 2678888888888866545553 245788888888
Q ss_pred CccccccccccccCCCCceEecccccccc-------cccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCE
Q 040451 236 NNLTGSLQDSLSNATNLQGLEINGNLFSG-------KVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEV 308 (566)
Q Consensus 236 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~ 308 (566)
+.+. ..|..+ .+++|+.|.+.++.... ..+......++|+.|++++|......+ ..+..+++|+.
T Consensus 735 n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP------~si~~L~~L~~ 806 (1153)
T PLN03210 735 TAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP------SSIQNLHKLEH 806 (1153)
T ss_pred Cccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC------hhhhCCCCCCE
Confidence 8776 344433 46677777776543211 111112234567777777765433333 34566677777
Q ss_pred EEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCc
Q 040451 309 LDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENF 388 (566)
Q Consensus 309 L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 388 (566)
|++++|...+..|... ..++|+.|++++|.....+|.. ..+|+.|+++++.++ .+|..+..+++|++|++++|.
T Consensus 807 L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 807 LEIENCINLETLPTGI--NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCN 880 (1153)
T ss_pred EECCCCCCcCeeCCCC--CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCC
Confidence 7777665333334332 1245666666665544333332 245666666666655 345555666666666666654
Q ss_pred ccccCCccccCCCCCCeEecccCc
Q 040451 389 LRGTIPSSLGNLTLLTQLILEVNN 412 (566)
Q Consensus 389 ~~~~~~~~~~~l~~L~~L~l~~~~ 412 (566)
-...+|..+..+++|+.+++++|.
T Consensus 881 ~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 881 NLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CcCccCcccccccCCCeeecCCCc
Confidence 333455555556666666666553
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=2.5e-22 Score=223.96 Aligned_cols=128 Identities=25% Similarity=0.211 Sum_probs=81.7
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEE
Q 040451 376 LKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLL 455 (566)
Q Consensus 376 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L 455 (566)
+++|++|++++|.....+|..++++++|+.|++++|...+.+|... .+++|+.|++++|.....+|.. ...++.|
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~----~~nL~~L 851 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI----STNISDL 851 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc----ccccCEe
Confidence 4567777777776555667777777777777777765433555444 5677777777776544333322 2334667
Q ss_pred EccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCc
Q 040451 456 DLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNS 509 (566)
Q Consensus 456 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 509 (566)
++++|.+. .+|..+..+++|+.|++++|.-...+|..+..++.|+.+++++|.
T Consensus 852 ~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 852 NLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 77777666 456666677777777777755444566666667777777777774
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=5.7e-24 Score=193.48 Aligned_cols=400 Identities=20% Similarity=0.205 Sum_probs=207.5
Q ss_pred CCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeC-CcccccCcccccccCccceeec
Q 040451 107 NVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRG-NRLGGRIPSTISHVRNLISFNV 185 (566)
Q Consensus 107 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l 185 (566)
.-..++|..|.|+...+.+|+.+++|+.|||++|+|+.+.|.+|..+++|.+|-+.+ |+|+......|+++..++.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 445667777777766666777777777777777777777777777777776666655 6776554556777777777777
Q ss_pred cccccccch-hhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccc
Q 040451 186 ARNQFSGMI-PLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSG 264 (566)
Q Consensus 186 ~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 264 (566)
.-|++.... ..+..++++..|.+.+|.+. .++...+..+..++.+.+..|.+.. ..+++.+.... .
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~~-------a 214 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADDL-------A 214 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcccc-----ccccchhhhHH-------h
Confidence 777766655 56666777777777777665 5555444455566666555554220 11111111100 0
Q ss_pred cccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCc
Q 040451 265 KVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGT 344 (566)
Q Consensus 265 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 344 (566)
..+..+++........+.+..+.......+ .....++..--.+.+......|.
T Consensus 215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf-----~c~~esl~s~~~~~d~~d~~cP~---------------------- 267 (498)
T KOG4237|consen 215 MNPIETSGARCVSPYRLYYKRINQEDARKF-----LCSLESLPSRLSSEDFPDSICPA---------------------- 267 (498)
T ss_pred hchhhcccceecchHHHHHHHhcccchhhh-----hhhHHhHHHhhccccCcCCcChH----------------------
Confidence 111111111111111222222211111000 00000000000011111111111
Q ss_pred cchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCC
Q 040451 345 IPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNC 424 (566)
Q Consensus 345 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~ 424 (566)
..|..+++|++|++++|+++.+...+|.+...+++|.+.+|++......+|..+..|+.|++.+|+|+...|.+|...
T Consensus 268 --~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~ 345 (498)
T KOG4237|consen 268 --KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTL 345 (498)
T ss_pred --HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccc
Confidence 234555555555555555555555555555555555555555543334445555555555555555555555555555
Q ss_pred CCCcEEEccCCcccc-----------------cCchhhhccCCcCcEEEccCCcce---ecCCcc---------ccCCCC
Q 040451 425 QNLILLTTRKNKLSG-----------------TVPRQLLHIITLPVLLDLSDNLLN---GHFPAE---------VGNLKN 475 (566)
Q Consensus 425 ~~L~~L~l~~~~l~~-----------------~~~~~~~~~~~~l~~L~l~~~~~~---~~~~~~---------l~~~~~ 475 (566)
.+|.+|.+-+|.+.- ..|+ .+.+..++.+++++..+. ...++. -..++-
T Consensus 346 ~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~--Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c 423 (498)
T KOG4237|consen 346 FSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPR--CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTC 423 (498)
T ss_pred ceeeeeehccCcccCccchHHHHHHHhhCCCCCCCC--CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcch
Confidence 555555555443210 0000 111112223333333221 111111 123444
Q ss_pred CCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCC
Q 040451 476 LVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSY 555 (566)
Q Consensus 476 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 555 (566)
+.+.-=..|+....+|..+. ..-.+|++.+|.++. +|.. .+.+| .+|+++|+++...-..|.++.+|.+|=|++
T Consensus 424 ~~tVvRcSnk~lk~lp~~iP--~d~telyl~gn~~~~-vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsy 497 (498)
T KOG4237|consen 424 LDTVVRCSNKLLKLLPRGIP--VDVTELYLDGNAITS-VPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSY 497 (498)
T ss_pred hhhhHhhcccchhhcCCCCC--chhHHHhcccchhcc-cCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEec
Confidence 54443333444446666554 567888999999884 5544 56778 899999998866666788888898888887
Q ss_pred C
Q 040451 556 N 556 (566)
Q Consensus 556 ~ 556 (566)
|
T Consensus 498 n 498 (498)
T KOG4237|consen 498 N 498 (498)
T ss_pred C
Confidence 5
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=4.6e-24 Score=194.05 Aligned_cols=253 Identities=22% Similarity=0.247 Sum_probs=188.6
Q ss_pred CCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccC-CcccccCCccccCCCCCCEEec
Q 040451 59 FPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASN-NKLEAEIPVEIGNLLMLQILNI 137 (566)
Q Consensus 59 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~l 137 (566)
.-..++|..|+|+..-+++|+.+++||+|||++|.|+.+.|.+|..++.|..|-+.+ |+|++.....|+++..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 567888999999844446688999999999999999888888999999888877776 8888555557889999999999
Q ss_pred ccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccch--hh-----------hhCCCC--
Q 040451 138 AENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMI--PL-----------IYNISS-- 202 (566)
Q Consensus 138 ~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~-----------l~~~~~-- 202 (566)
..+++......++..+++|..|.+..|.+..+-...+..+..++.+.++.|.+.... ++ +.+...
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 999888778888899999999999998887443346788888888888776632111 11 111111
Q ss_pred --------------------CcEE---EcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEeccc
Q 040451 203 --------------------LQYI---FIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEING 259 (566)
Q Consensus 203 --------------------L~~L---~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 259 (566)
++.+ ..+.+......|..-+..+++|++|++++|+++.+-+.+|.+..++++|.+..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 1111 11122222344444456788899999999988888888888888899999988
Q ss_pred ccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccc
Q 040451 260 NLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFG 317 (566)
Q Consensus 260 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 317 (566)
|++.......|.++..|+.|++++|+++...+ ..|....+|..|++-.|.+.
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~------~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP------GAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEEEec------ccccccceeeeeehccCccc
Confidence 88877777778888888889999998888777 56677778888888777653
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=5.5e-19 Score=183.07 Aligned_cols=262 Identities=26% Similarity=0.298 Sum_probs=136.0
Q ss_pred CccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCC
Q 040451 227 NLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKL 306 (566)
Q Consensus 227 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L 306 (566)
.-..|+++.+.++ ..|..+. ++|+.|++.+|.++. .|. .+++|++|++++|.++..+. ..++|
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsLP~----------lp~sL 264 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPV----------LPPGL 264 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcccC----------ccccc
Confidence 3456777777776 3454443 367777777777663 332 24667777777777664432 13566
Q ss_pred CEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccC
Q 040451 307 EVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNE 386 (566)
Q Consensus 307 ~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 386 (566)
+.|++.+|.+... | ..+..++.|++.+|+++. +|. .+++|+.|++++|.+++. +. ...+|+.|++++
T Consensus 265 ~~L~Ls~N~L~~L-p----~lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p~---lp~~L~~L~Ls~ 331 (788)
T PRK15387 265 LELSIFSNPLTHL-P----ALPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYN 331 (788)
T ss_pred ceeeccCCchhhh-h----hchhhcCEEECcCCcccc-ccc---cccccceeECCCCccccC-CC---Cccccccccccc
Confidence 7777777765522 1 123456666666666553 232 234566666666665532 21 123455666666
Q ss_pred CcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecC
Q 040451 387 NFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHF 466 (566)
Q Consensus 387 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~ 466 (566)
|.++ .+|.. ..+|+.|++++|+++ .+|.. ..+|+.|++++|.+. .+|.. +..++.|++++|.+.. +
T Consensus 332 N~L~-~LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l----~~~L~~LdLs~N~Lt~-L 397 (788)
T PRK15387 332 NQLT-SLPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLTS-L 397 (788)
T ss_pred Cccc-ccccc---ccccceEecCCCccC-CCCCC---Ccccceehhhccccc-cCccc----ccccceEEecCCcccC-C
Confidence 6655 33321 135666666666665 23321 234555566666554 33321 1223555555555552 2
Q ss_pred CccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCc
Q 040451 467 PAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQ 540 (566)
Q Consensus 467 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 540 (566)
|.. .++|+.|++++|.++ .+|.. +.+|+.|++++|.++ .+|..+..+++|+.|++++|++++..+.
T Consensus 398 P~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 398 PVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred CCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 221 234555555555555 33332 234555555555555 3455555555555555555555544433
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.79 E-value=2.5e-18 Score=178.22 Aligned_cols=264 Identities=22% Similarity=0.291 Sum_probs=144.9
Q ss_pred cEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEcc
Q 040451 35 RVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEAS 114 (566)
Q Consensus 35 ~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~ 114 (566)
+-..|+++.+.++ .+|..+. ++|+.|++.+|+++ .+|. ..++|++|++++|.++ .+|. ..++|+.|+++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~---lp~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccC---cccccceeecc
Confidence 3456788888777 4666664 47888888888877 5664 2467788888888776 3443 23577777777
Q ss_pred CCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccch
Q 040451 115 NNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMI 194 (566)
Q Consensus 115 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 194 (566)
+|.+. .+|..+ ++|+.|++++|+++ .+|.. .++|++|++++|.+.. +|... ..|+.|++++|.+..++
T Consensus 271 ~N~L~-~Lp~lp---~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~~LP 338 (788)
T PRK15387 271 SNPLT-HLPALP---SGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLTSLP 338 (788)
T ss_pred CCchh-hhhhch---hhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCCc---ccccccccccCcccccc
Confidence 77766 344322 45677777777777 45542 3567777777777663 33321 34555666666655433
Q ss_pred hhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCC
Q 040451 195 PLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQ 274 (566)
Q Consensus 195 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 274 (566)
.. ..+|++|++++|.+. .+|.. .++|+.|++++|.+.. .|.. ..
T Consensus 339 ~l---p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~~-LP~l---------------------------~~ 382 (788)
T PRK15387 339 TL---PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTS-LPAL---------------------------PS 382 (788)
T ss_pred cc---ccccceEecCCCccC-CCCCC----Ccccceehhhcccccc-Cccc---------------------------cc
Confidence 21 134555555555554 33321 2344455555554442 2211 12
Q ss_pred CCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCC
Q 040451 275 NLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVN 354 (566)
Q Consensus 275 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~ 354 (566)
+|+.|++++|.+...+. ..++|+.|++++|.+... |. .+..++.|++++|+++ .+|..+..+++
T Consensus 383 ~L~~LdLs~N~Lt~LP~----------l~s~L~~LdLS~N~LssI-P~----l~~~L~~L~Ls~NqLt-~LP~sl~~L~~ 446 (788)
T PRK15387 383 GLKELIVSGNRLTSLPV----------LPSELKELMVSGNRLTSL-PM----LPSGLLSLSVYRNQLT-RLPESLIHLSS 446 (788)
T ss_pred ccceEEecCCcccCCCC----------cccCCCEEEccCCcCCCC-Cc----chhhhhhhhhccCccc-ccChHHhhccC
Confidence 34445555544433221 113455555555554421 21 1123444555555554 45555666666
Q ss_pred CCEEecCCccccccchhhc
Q 040451 355 LNALGVESNQLAGTIPLAI 373 (566)
Q Consensus 355 L~~L~l~~~~~~~~~~~~~ 373 (566)
|+.+++++|++++..+..+
T Consensus 447 L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 447 ETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCeEECCCCCCCchHHHHH
Confidence 6677777666665544443
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=5.9e-19 Score=171.68 Aligned_cols=106 Identities=25% Similarity=0.327 Sum_probs=68.2
Q ss_pred cEEEccCCcceec----CCccccCCCCCCEEEccCCcccccCCcCC-----cCCCCCcEEeCCCCcccc----cCCcCCC
Q 040451 453 VLLDLSDNLLNGH----FPAEVGNLKNLVSLDISSNMFSGEIPTTL-----GGCTSLEYLGMQDNSFTR----SIPSTLS 519 (566)
Q Consensus 453 ~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~----~~~~~l~ 519 (566)
+.|++++|.+.+. ....+..+++|+.|++++|.+.+.....+ ...+.|++|++++|.+++ .+...+.
T Consensus 196 ~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~ 275 (319)
T cd00116 196 EVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLA 275 (319)
T ss_pred CEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHh
Confidence 4445554444322 12345667888888888888774222111 124788999999988862 2334556
Q ss_pred CCCCCCEEeCCCCccccc----CCccCcCC-CCCCeeeCCCCcC
Q 040451 520 SLKSITELDLSRNNLSGH----IPQYLENL-SFLSFLNLSYNHF 558 (566)
Q Consensus 520 ~l~~L~~L~l~~n~~~~~----~~~~l~~~-~~L~~L~l~~~~l 558 (566)
.+++|+.+++++|.++.. ....+... +.|++|++.+|++
T Consensus 276 ~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 276 EKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred cCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 668899999999988844 33444444 6788999888864
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=4.7e-19 Score=172.38 Aligned_cols=275 Identities=21% Similarity=0.264 Sum_probs=135.2
Q ss_pred EEcCCCCCc-ccCcccCcCCCCCcEEEcCCCCCccc----cCccccCCCCCCEEeCCCccCCC------CCCcccccCCC
Q 040451 39 LDLRQQSVG-GVLSPFVGNLSFPRSINLPNKSFRGE----IPHEVSNLFRLQNLTLTNNYFSG------KILTDLSHCSN 107 (566)
Q Consensus 39 l~l~~~~~~-~~~~~~l~~l~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~------~~~~~~~~l~~ 107 (566)
|+|..+.+. ......+..+++|++|+++++.+++. ++..+...+++++++++++.+.. ..+..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 566666665 33445556677788888887777432 45555666777777777776541 11233445556
Q ss_pred CCEEEccCCcccccCCccccCCCC---CCEEecccCcCCC----CCchhhcCC-CCCCEEEeeCCcccc----cCccccc
Q 040451 108 VMKFEASNNKLEAEIPVEIGNLLM---LQILNIAENHLKG----QLPASIGNL-SALQEIDVRGNRLGG----RIPSTIS 175 (566)
Q Consensus 108 L~~L~L~~~~~~~~~~~~~~~l~~---L~~L~l~~~~i~~----~~~~~l~~l-~~L~~L~l~~~~~~~----~~~~~l~ 175 (566)
|++|++++|.+....+..+..+.. |++|++++|++.. .+...+..+ ++|++|++++|.+++ .++..+.
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 666666666554333333333333 6666666555542 112223344 555555555555542 1122233
Q ss_pred ccCccceeeccccccccch-----hhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCcccccc----cccc
Q 040451 176 HVRNLISFNVARNQFSGMI-----PLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSL----QDSL 246 (566)
Q Consensus 176 ~l~~L~~L~l~~~~~~~~~-----~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l 246 (566)
.+++|++|++++|.+.+.. ..+... ++|++|++++|.+++.. ...+
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~-------------------------~~L~~L~L~~n~i~~~~~~~l~~~~ 217 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKAN-------------------------CNLEVLDLNNNGLTDEGASALAETL 217 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhC-------------------------CCCCEEeccCCccChHHHHHHHHHh
Confidence 3444555555555444211 122223 34555555544443221 1223
Q ss_pred ccCCCCceEeccccccccccccccc-----CCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccc
Q 040451 247 SNATNLQGLEINGNLFSGKVSINFS-----RLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLP 321 (566)
Q Consensus 247 ~~l~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 321 (566)
..+++|++|++++|.+.+.....+. ..+.|+.|++++|.+..... ..+...+..+++|+++++++|.+.....
T Consensus 218 ~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~--~~l~~~~~~~~~L~~l~l~~N~l~~~~~ 295 (319)
T cd00116 218 ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGA--KDLAEVLAEKESLLELDLRGNKFGEEGA 295 (319)
T ss_pred cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHH--HHHHHHHhcCCCccEEECCCCCCcHHHH
Confidence 3445566666655555432221111 13566666666665543221 1222344455667777777776664432
Q ss_pred hhHh----hccccccEEEccccC
Q 040451 322 FSLA----NLSITMTEIANGSNQ 340 (566)
Q Consensus 322 ~~~~----~~~~~l~~l~l~~~~ 340 (566)
..+. .....++.+++.+++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 296 QLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHhhcCCchhhcccCCCC
Confidence 2222 222355666655543
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.72 E-value=4.8e-17 Score=169.93 Aligned_cols=260 Identities=19% Similarity=0.312 Sum_probs=182.2
Q ss_pred CcccCccCCCCCcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCccc
Q 040451 23 QWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDL 102 (566)
Q Consensus 23 ~w~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 102 (566)
.+....|.. .+...|+++++.++. +|..+. ++|+.|+|++|.++ .+|..+. ++|++|++++|.++ .+|..+
T Consensus 169 ~~r~~~Cl~--~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l 239 (754)
T PRK15370 169 VQRMRDCLK--NNKTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATL 239 (754)
T ss_pred HHHHHhhcc--cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhh
Confidence 334456754 567889999988874 565554 57999999999988 7776554 58999999999887 456544
Q ss_pred ccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccce
Q 040451 103 SHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLIS 182 (566)
Q Consensus 103 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 182 (566)
. .+|+.|++++|.+. .+|..+. .+|++|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.
T Consensus 240 ~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~ 308 (754)
T PRK15370 240 P--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITH 308 (754)
T ss_pred h--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHH
Confidence 3 47999999999987 6776665 47999999999988 5777654 48999999999887 4555443 46888
Q ss_pred eeccccccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccc
Q 040451 183 FNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLF 262 (566)
Q Consensus 183 L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 262 (566)
|++++|.+...+..+ .++|+.|++++|.++ .+|..+ .++|+.|++++|.+. ..|..+ .+.|+.|++++|.+
T Consensus 309 L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~L 379 (754)
T PRK15370 309 LNVQSNSLTALPETL--PPGLKTLEAGENALT-SLPASL---PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNAL 379 (754)
T ss_pred HHhcCCccccCCccc--cccceeccccCCccc-cCChhh---cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcC
Confidence 888888887665333 257888888888876 466443 367888888888777 344433 35788888888877
Q ss_pred cccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccc
Q 040451 263 SGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFG 317 (566)
Q Consensus 263 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 317 (566)
.. .|..+. ..|+.|++++|.+...+. . +......++.+..+++.+|.+.
T Consensus 380 t~-LP~~l~--~sL~~LdLs~N~L~~LP~-s--l~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 380 TN-LPENLP--AALQIMQASRNNLVRLPE-S--LPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CC-CCHhHH--HHHHHHhhccCCcccCch-h--HHHHhhcCCCccEEEeeCCCcc
Confidence 63 333332 357777777777764322 1 1123344567777777777765
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.70 E-value=5.9e-17 Score=169.27 Aligned_cols=183 Identities=25% Similarity=0.433 Sum_probs=120.5
Q ss_pred cccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 040451 330 TMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILE 409 (566)
Q Consensus 330 ~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 409 (566)
.++.|++++|.+. .+|..+. .+|+.|++++|.++ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|+++
T Consensus 242 ~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls 312 (754)
T PRK15370 242 TIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQ 312 (754)
T ss_pred cccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhc
Confidence 4555555555554 3444443 46888888888887 3454442 57889999988887 4554433 478888888
Q ss_pred cCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCccccc
Q 040451 410 VNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGE 489 (566)
Q Consensus 410 ~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 489 (566)
+|.++ .+|..+ .++|+.|++++|.++ .+|..+. +.++.|++++|++. .+|..+. ++|+.|++++|.++ .
T Consensus 313 ~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~---~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~ 381 (754)
T PRK15370 313 SNSLT-ALPETL--PPGLKTLEAGENALT-SLPASLP---PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-N 381 (754)
T ss_pred CCccc-cCCccc--cccceeccccCCccc-cCChhhc---CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-C
Confidence 88887 344333 357888888888877 4554432 34577888888776 3454443 57788888888777 5
Q ss_pred CCcCCcCCCCCcEEeCCCCcccccCCcCC----CCCCCCCEEeCCCCccc
Q 040451 490 IPTTLGGCTSLEYLGMQDNSFTRSIPSTL----SSLKSITELDLSRNNLS 535 (566)
Q Consensus 490 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l----~~l~~L~~L~l~~n~~~ 535 (566)
+|..+. ..|+.|++++|++. .+|..+ ..++.+..|++.+|+++
T Consensus 382 LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 382 LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 555444 46777888888777 345433 33467778888888776
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=9.3e-19 Score=141.36 Aligned_cols=152 Identities=21% Similarity=0.382 Sum_probs=61.3
Q ss_pred CCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEE
Q 040451 56 NLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQIL 135 (566)
Q Consensus 56 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L 135 (566)
++.+++.|.|+.|+++ .+|..++.+.+|++|++++|+++ .+|..++.+++|+.|++.-|++. .+|..|+.++.|++|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 3344444444444444 34444444444444444444444 33444444444444444444433 334444444444444
Q ss_pred ecccCcCCC-CCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccC
Q 040451 136 NIAENHLKG-QLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTN 211 (566)
Q Consensus 136 ~l~~~~i~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~ 211 (566)
|+..|++.. .+|..|..+..|+.|.++.|.+. .+|..++++++|+.|.+++|.+...+..++.+..|++|.+.+|
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc
Confidence 444433321 23333333334444444444333 3333344444444444443333333333333333333333333
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=1.3e-18 Score=140.55 Aligned_cols=162 Identities=23% Similarity=0.411 Sum_probs=150.1
Q ss_pred CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEc
Q 040451 34 QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEA 113 (566)
Q Consensus 34 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 113 (566)
.+|++|.||.|.++ ..|+.++++.+|++|++++|++. ++|..++.+++|+.|++.-|++. .+|..|+.++-|++||+
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence 68999999999997 57888999999999999999998 99999999999999999999987 78999999999999999
Q ss_pred cCCcccc-cCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeecccccccc
Q 040451 114 SNNKLEA-EIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSG 192 (566)
Q Consensus 114 ~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 192 (566)
++|.+.. .+|..|..++.|+.|.+++|.+. .+|..++++++|+.|.++.|.+. .+|..++.+..|+.|.+.+|++..
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeee
Confidence 9998864 68889999999999999999999 89999999999999999999987 789999999999999999999998
Q ss_pred chhhhhCC
Q 040451 193 MIPLIYNI 200 (566)
Q Consensus 193 ~~~~l~~~ 200 (566)
.++.++++
T Consensus 188 lppel~~l 195 (264)
T KOG0617|consen 188 LPPELANL 195 (264)
T ss_pred cChhhhhh
Confidence 88666653
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.38 E-value=1.6e-12 Score=135.81 Aligned_cols=137 Identities=29% Similarity=0.504 Sum_probs=98.8
Q ss_pred ccCCCCCCCCCCCCCCCCCCC----CcccCccCCCC----CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccc
Q 040451 2 KSQLQDPLGVTSSWNNSINLC----QWTGVTCGHRR----QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGE 73 (566)
Q Consensus 2 ~~~~~~~~~~~~~w~~~~~~c----~w~~~~~~~~~----~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 73 (566)
|+++.+|.. .+|+. +.|+ .|.|+.|.... ..|+.|+|+++.+.+.+|..++++++|++|+|++|.+.+.
T Consensus 381 k~~~~~~~~--~~W~g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~ 457 (623)
T PLN03150 381 KSSLGLPLR--FGWNG-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN 457 (623)
T ss_pred HHhcCCccc--CCCCC-CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc
Confidence 344444432 58963 4443 79999995321 2488888888888888888888888888888888888888
Q ss_pred cCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCC-CCCCEEecccCc
Q 040451 74 IPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNL-LMLQILNIAENH 141 (566)
Q Consensus 74 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l-~~L~~L~l~~~~ 141 (566)
+|..++.+++|+.|+|++|.+++..|..+..+++|++|+|++|.+.+.+|..++.. .++..+++.+|.
T Consensus 458 iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 458 IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 88878888888888888888877777777777777777777777776777666543 345556655554
No 24
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.23 E-value=2.4e-12 Score=114.07 Aligned_cols=208 Identities=22% Similarity=0.180 Sum_probs=141.9
Q ss_pred ccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCc-ceecCCcccc
Q 040451 344 TIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNN-LQGKIPPSIG 422 (566)
Q Consensus 344 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~ 422 (566)
.+|..+..+.+|+.+.++.|.-..+ ......-|.|.++.+....+.+ .+ .+--+..+....-+.-. .+|.......
T Consensus 205 ~l~f~l~~f~~l~~~~~s~~~~~~i-~~~~~~kptl~t~~v~~s~~~~-~~-~l~pe~~~~D~~~~E~~t~~G~~~~~~d 281 (490)
T KOG1259|consen 205 RLSFNLNAFRNLKTLKFSALSTENI-VDIELLKPTLQTICVHNTTIQD-VP-SLLPETILADPSGSEPSTSNGSALVSAD 281 (490)
T ss_pred ccccchHHhhhhheeeeeccchhhe-eceeecCchhheeeeecccccc-cc-cccchhhhcCccCCCCCccCCceEEecc
Confidence 4555566778888888888754322 2222344778888887665542 11 11111222221111111 1122222333
Q ss_pred CCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcE
Q 040451 423 NCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEY 502 (566)
Q Consensus 423 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 502 (566)
..+.|+.+++++|.++ .+...+--. +.++.|++++|.+... ..+..+++|+.||+++|.++ .+..+=..+-++++
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~-Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLA-PKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT 356 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhc-cceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence 4567889999999886 444444333 4448999999999754 34888999999999999998 55565567788999
Q ss_pred EeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccC-CccCcCCCCCCeeeCCCCcCccc
Q 040451 503 LGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHI-PQYLENLSFLSFLNLSYNHFEGK 561 (566)
Q Consensus 503 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~~~l~~~ 561 (566)
|.+++|.+.. ..+++.+-+|..||+++|+|.... ...++++|.|+.+.|.+|++.+.
T Consensus 357 L~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 357 LKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred eehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 9999999874 358999999999999999997543 36688999999999999999864
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.22 E-value=2.8e-12 Score=116.28 Aligned_cols=142 Identities=19% Similarity=0.225 Sum_probs=70.7
Q ss_pred CCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhcc
Q 040451 273 LQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANL 352 (566)
Q Consensus 273 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l 352 (566)
.+.|+.+..++|.+...+...+. ..++.++.|+.+.+..|.+...... .+...+..+
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A--~~~~~~~~leevr~~qN~I~~eG~~---------------------al~eal~~~ 212 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALA--EAFQSHPTLEEVRLSQNGIRPEGVT---------------------ALAEALEHC 212 (382)
T ss_pred CcceEEEEeeccccccccHHHHH--HHHHhccccceEEEecccccCchhH---------------------HHHHHHHhC
Confidence 34555555555555544443322 4455556666666665554422211 122344555
Q ss_pred CCCCEEecCCcccccc----chhhccCCCCCCEEEccCCcccccCCccc-----cCCCCCCeEecccCcceec----CCc
Q 040451 353 VNLNALGVESNQLAGT----IPLAIGELKSLQMLFLNENFLRGTIPSSL-----GNLTLLTQLILEVNNLQGK----IPP 419 (566)
Q Consensus 353 ~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~l~~~----~~~ 419 (566)
++|+.|++++|.++.. +...+..+++|++|++++|.+.......+ ...|+|+.+.+.+|.++.. +..
T Consensus 213 ~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~ 292 (382)
T KOG1909|consen 213 PHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAA 292 (382)
T ss_pred CcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHH
Confidence 5666666666555433 22234445556666666665543332222 2245666666666655421 222
Q ss_pred cccCCCCCcEEEccCCcc
Q 040451 420 SIGNCQNLILLTTRKNKL 437 (566)
Q Consensus 420 ~~~~~~~L~~L~l~~~~l 437 (566)
.....+.|..|++++|.+
T Consensus 293 ~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 293 CMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhcchhhHHhcCCcccc
Confidence 233456666666666666
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.21 E-value=5.9e-12 Score=114.25 Aligned_cols=244 Identities=19% Similarity=0.230 Sum_probs=155.0
Q ss_pred hhhcCCCCCCEEEeeCCccccc----CcccccccCccceeeccccccc----cch-------hhhhCCCCCcEEEcccCc
Q 040451 148 ASIGNLSALQEIDVRGNRLGGR----IPSTISHVRNLISFNVARNQFS----GMI-------PLIYNISSLQYIFIHTNR 212 (566)
Q Consensus 148 ~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~----~~~-------~~l~~~~~L~~L~l~~~~ 212 (566)
..+..+..++.+++++|.+... +...+.+.++|+..++++-.-. ..+ ..+..+++|+++++++|-
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 3445677888899998877532 3334556677777777653211 111 345567788888888887
Q ss_pred CcccCCcc---ccCCCCCccEEEccCCccccccc-------------cccccCCCCceEeccccccccccc----ccccC
Q 040451 213 FHGSLPLD---NGVNLPNLRYFSISGNNLTGSLQ-------------DSLSNATNLQGLEINGNLFSGKVS----INFSR 272 (566)
Q Consensus 213 ~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~-------------~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~ 272 (566)
+....+.. +..++..|++|++.+|++....- ...+.-+.|+++..++|++..... ..|..
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS 183 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence 75433322 22357788888888887653221 123345678888888887754333 23566
Q ss_pred CCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhcc
Q 040451 273 LQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANL 352 (566)
Q Consensus 273 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l 352 (566)
.+.|+.+.++.|.+..... ......+..|++|++|+++.|.++......++. .+..+
T Consensus 184 ~~~leevr~~qN~I~~eG~--~al~eal~~~~~LevLdl~DNtft~egs~~Lak---------------------aL~s~ 240 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGV--TALAEALEHCPHLEVLDLRDNTFTLEGSVALAK---------------------ALSSW 240 (382)
T ss_pred ccccceEEEecccccCchh--HHHHHHHHhCCcceeeecccchhhhHHHHHHHH---------------------Hhccc
Confidence 6788888888887765444 233356778888888888888776444333333 35566
Q ss_pred CCCCEEecCCccccccchhhc-----cCCCCCCEEEccCCccccc----CCccccCCCCCCeEecccCcce
Q 040451 353 VNLNALGVESNQLAGTIPLAI-----GELKSLQMLFLNENFLRGT----IPSSLGNLTLLTQLILEVNNLQ 414 (566)
Q Consensus 353 ~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~ 414 (566)
++|+.+++++|-+......++ ...|+|+.+.+.+|.++.. +...+...+.|+.|++++|.+.
T Consensus 241 ~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 241 PHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred chheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 778888888887765433322 2467888888888877632 2333445678888888888773
No 27
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.20 E-value=1.1e-11 Score=132.12 Aligned_cols=152 Identities=20% Similarity=0.282 Sum_probs=108.2
Q ss_pred CcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCcc--CCCCCCcccccCCCCCEEEccCCcccccCCccccCCCC
Q 040451 54 VGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNY--FSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLM 131 (566)
Q Consensus 54 l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~ 131 (566)
..+....+...+.++.+. .++... .+++|++|-+.++. +.......|..++.|++|||++|.-.+.+|..++++-+
T Consensus 519 ~~~~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred ccchhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 344566777777777765 444433 34478888887775 44344555788888999999887766688888999999
Q ss_pred CCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccch---hhhhCCCCCcEEEc
Q 040451 132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMI---PLIYNISSLQYIFI 208 (566)
Q Consensus 132 L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~l~~~~~L~~L~l 208 (566)
||+|+++++.+. .+|..+.+++.|.+|++..+.-....+.....+.+|++|.+......... ..+.++++|+.+..
T Consensus 597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 999999999888 78999999999999998877655455566666888888888766532222 34445555555544
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.18 E-value=3.4e-11 Score=102.62 Aligned_cols=125 Identities=22% Similarity=0.339 Sum_probs=42.0
Q ss_pred CCCCCCEEeCCCccCCCCCCcccc-cCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhh-cCCCCCC
Q 040451 80 NLFRLQNLTLTNNYFSGKILTDLS-HCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASI-GNLSALQ 157 (566)
Q Consensus 80 ~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l-~~l~~L~ 157 (566)
+..++++|+|++|.++. .+.++ .+.+|+.|++++|.++. + +.+..+++|++|++++|+|+ .+...+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred ccccccccccccccccc--ccchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence 34456666666666652 12343 45666666666666653 2 24666777777777777777 344444 3567777
Q ss_pred EEEeeCCccccc-CcccccccCccceeeccccccccch----hhhhCCCCCcEEEcc
Q 040451 158 EIDVRGNRLGGR-IPSTISHVRNLISFNVARNQFSGMI----PLIYNISSLQYIFIH 209 (566)
Q Consensus 158 ~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~----~~l~~~~~L~~L~l~ 209 (566)
+|++++|++.+. ....++.+++|+.|++.+|.+.... ..+..+|+|+.||-.
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 777777776531 1234566777777777777776544 345667777777643
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=5.4e-12 Score=117.72 Aligned_cols=206 Identities=24% Similarity=0.237 Sum_probs=127.8
Q ss_pred ccccEEEccccCccCccc-hhhhccCCCCEEecCCcccccc--chhhccCCCCCCEEEccCCcccccCC-ccccCCCCCC
Q 040451 329 ITMTEIANGSNQISGTIP-DVIANLVNLNALGVESNQLAGT--IPLAIGELKSLQMLFLNENFLRGTIP-SSLGNLTLLT 404 (566)
Q Consensus 329 ~~l~~l~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~ 404 (566)
.+|+++.+.++.+..... .....+++++.|+++.|-+... +......+|+|+.|+++.|.+.-... ..-..+++|+
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 356666676666543221 3556788888888888755422 33455678888888888887652111 1112567888
Q ss_pred eEecccCcceec-CCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCC-ccccCCCCCCEEEcc
Q 040451 405 QLILEVNNLQGK-IPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFP-AEVGNLKNLVSLDIS 482 (566)
Q Consensus 405 ~L~l~~~~l~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~ 482 (566)
.|.++.|.++.. +...+..+|+|..|.+.+|... .+-..-......++.||+++|++.+... ...+.++.|+.|+++
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 888888887632 3344567788888888888522 1111222233334778888887764321 235677788888888
Q ss_pred CCccccc-CCcC-----CcCCCCCcEEeCCCCccccc-CCcCCCCCCCCCEEeCCCCccc
Q 040451 483 SNMFSGE-IPTT-----LGGCTSLEYLGMQDNSFTRS-IPSTLSSLKSITELDLSRNNLS 535 (566)
Q Consensus 483 ~~~~~~~-~~~~-----~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~~~ 535 (566)
.|++... .|++ ...+++|+.|++++|++.+- .-..+..+++|+.|.+..|++.
T Consensus 280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 8877633 3333 35567888888888877531 1133556677777777777775
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.17 E-value=6.2e-13 Score=127.82 Aligned_cols=168 Identities=32% Similarity=0.461 Sum_probs=83.3
Q ss_pred EEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCc
Q 040451 382 LFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNL 461 (566)
Q Consensus 382 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~ 461 (566)
.+++.|++. ++|..+..+..|+.+.+..|-+. .+|.++..+..|+.++++.|.+. ..|..++.++ ++++.+++|+
T Consensus 80 aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp--Lkvli~sNNk 154 (722)
T KOG0532|consen 80 ADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP--LKVLIVSNNK 154 (722)
T ss_pred hhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc--ceeEEEecCc
Confidence 344444444 44444444444444444444443 34444444444444444444443 4444443332 2445555555
Q ss_pred ceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCcc
Q 040451 462 LNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQY 541 (566)
Q Consensus 462 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 541 (566)
+. .+|+.++..+.|..||.+.|.+. .+|..++.+.+|+.|.+++|++.. +|+.+.. -.|.+||++.|+++ .+|.+
T Consensus 155 l~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~-LpLi~lDfScNkis-~iPv~ 229 (722)
T KOG0532|consen 155 LT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCS-LPLIRLDFSCNKIS-YLPVD 229 (722)
T ss_pred cc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhC-CceeeeecccCcee-ecchh
Confidence 54 34444555555555555555555 444455555555555555555553 3434432 34555555555555 55555
Q ss_pred CcCCCCCCeeeCCCCcCc
Q 040451 542 LENLSFLSFLNLSYNHFE 559 (566)
Q Consensus 542 l~~~~~L~~L~l~~~~l~ 559 (566)
|.++..|++|.|.+|++.
T Consensus 230 fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhhheeeeeccCCCC
Confidence 555555555555555554
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.16 E-value=6.6e-13 Score=127.64 Aligned_cols=173 Identities=27% Similarity=0.384 Sum_probs=119.2
Q ss_pred CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEc
Q 040451 34 QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEA 113 (566)
Q Consensus 34 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 113 (566)
...+..|++.|.+. .+|..+..|..|+.+.|..|.+. .+|..++++..|.+|+|+.|+++ .+|..++.|+ |++|-+
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence 45555666666665 45666666667777777777766 66666777777777777777766 5666666654 677777
Q ss_pred cCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccc
Q 040451 114 SNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGM 193 (566)
Q Consensus 114 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 193 (566)
++|+++ .+|..++.+..|..||.+.|.+. .+|..++.+..|+.|.++.|++. .+|..+.. -.|..||++.|++..+
T Consensus 151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis~i 226 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKISYL 226 (722)
T ss_pred ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCceeec
Confidence 777776 56677776677777777777776 56777777777777777777765 55665653 3466677777777777
Q ss_pred hhhhhCCCCCcEEEcccCcCc
Q 040451 194 IPLIYNISSLQYIFIHTNRFH 214 (566)
Q Consensus 194 ~~~l~~~~~L~~L~l~~~~~~ 214 (566)
+..+..++.|++|.+.+|++.
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred chhhhhhhhheeeeeccCCCC
Confidence 767777777777777777765
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.15 E-value=5.3e-11 Score=119.11 Aligned_cols=198 Identities=29% Similarity=0.492 Sum_probs=139.6
Q ss_pred EEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCC-CCCEEEccCCcccccCCccccCCCCCCEEecccC
Q 040451 62 SINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCS-NVMKFEASNNKLEAEIPVEIGNLLMLQILNIAEN 140 (566)
Q Consensus 62 ~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~ 140 (566)
.+.+..+.+..... .+..++.++.|++.++.++ .++....... +|++|++++|.+. .+|..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCch-hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 46666666642332 3455577888888888877 5565666664 8888888888876 55556788888888888888
Q ss_pred cCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCcccCCcc
Q 040451 141 HLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLD 220 (566)
Q Consensus 141 ~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 220 (566)
+++ .++......+.|+.|++++|++. .+|..+.....|+.+.+++|.+......+..+..+..+.+.++.+. .++..
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~ 250 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPES 250 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccch
Confidence 888 56666667788888888888877 5666555666688888888865555566677777777777777665 22323
Q ss_pred ccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccc
Q 040451 221 NGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSI 268 (566)
Q Consensus 221 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 268 (566)
.. .++.++.++++.|.+..... +..+..++.|+++++.+....+.
T Consensus 251 ~~-~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 251 IG-NLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred hc-cccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 33 66778888888888875543 77778888888888877655443
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.14 E-value=6.6e-11 Score=118.47 Aligned_cols=196 Identities=33% Similarity=0.497 Sum_probs=100.9
Q ss_pred EEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCC-CCCEEEccCCcccccCCccccCCCCCCeEecccC
Q 040451 333 EIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELK-SLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVN 411 (566)
Q Consensus 333 ~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 411 (566)
.+....+.+... ...+.....++.+.+.++.++.. +....... +|++|++++|++. .++..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccccC-ccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 344555444221 12233445667777777766633 33343442 6777777777766 44455666777777777777
Q ss_pred cceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCC
Q 040451 412 NLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIP 491 (566)
Q Consensus 412 ~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 491 (566)
++. .++......+.|+.+++++|++. .+|..... ...++.+.+++|... ..+..+..+..+..+.+.+|++. ..+
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~-~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL-LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLP 248 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhh-hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ecc
Confidence 766 44444445666666666666665 44433211 121244555555322 12233444455555555555554 223
Q ss_pred cCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccC
Q 040451 492 TTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHI 538 (566)
Q Consensus 492 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 538 (566)
..++.++.++.|++++|.++...+ +..+.+|+.|+++++.++...
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred chhccccccceecccccccccccc--ccccCccCEEeccCccccccc
Confidence 444445555555555555553222 445555555555555554333
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.1e-11 Score=115.72 Aligned_cols=8 Identities=38% Similarity=0.949 Sum_probs=5.5
Q ss_pred CcccCccC
Q 040451 23 QWTGVTCG 30 (566)
Q Consensus 23 ~w~~~~~~ 30 (566)
.|.|+.+.
T Consensus 30 ~w~GvEWD 37 (505)
T KOG3207|consen 30 KWYGVEWD 37 (505)
T ss_pred cceeeEec
Confidence 67777764
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.10 E-value=1.2e-10 Score=124.31 Aligned_cols=151 Identities=16% Similarity=0.213 Sum_probs=112.2
Q ss_pred CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCC--CccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEE
Q 040451 34 QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKS--FRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKF 111 (566)
Q Consensus 34 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 111 (566)
..+++.++-++.+..... -.+++.|++|-+.++. +.....+.|..++.|++||+++|.-.+.+|..++.+.+||+|
T Consensus 523 ~~~rr~s~~~~~~~~~~~--~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAG--SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchhhccC--CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 467888877777653222 2445579999888886 442333447889999999999987666899999999999999
Q ss_pred EccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCccc--ccCcccccccCccceeeccc
Q 040451 112 EASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLG--GRIPSTISHVRNLISFNVAR 187 (566)
Q Consensus 112 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~ 187 (566)
+++++.+. .+|..+++++.|.+|++..+......+.....+++|++|.+...... ......+..+.+|+.+.+..
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 99999998 89999999999999999988765455666777999999999876422 12223345555666555543
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.09 E-value=9.9e-11 Score=99.81 Aligned_cols=127 Identities=23% Similarity=0.321 Sum_probs=50.2
Q ss_pred CcCCCCCcEEEcCCCCCccccCcccc-CCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccc-cCCCC
Q 040451 54 VGNLSFPRSINLPNKSFRGEIPHEVS-NLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEI-GNLLM 131 (566)
Q Consensus 54 l~~l~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~-~~l~~ 131 (566)
+.+..++++|+|++|.+. .+.. ++ .+.+|++|++++|.++. .+.+..+++|++|++++|+++. +...+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~Ie~-L~~~l~~L~~L~Ls~N~I~~--l~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TIEN-LGATLDKLEVLDLSNNQITK--LEGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN 89 (175)
T ss_dssp ----------------------S---TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred cccccccccccccccccc-cccc-hhhhhcCCCEEECCCCCCcc--ccCccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence 345557889999999887 5543 44 57889999999998873 3457888999999999999884 44444 36889
Q ss_pred CCEEecccCcCCCC-CchhhcCCCCCCEEEeeCCcccccCcc----cccccCccceeecc
Q 040451 132 LQILNIAENHLKGQ-LPASIGNLSALQEIDVRGNRLGGRIPS----TISHVRNLISFNVA 186 (566)
Q Consensus 132 L~~L~l~~~~i~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~ 186 (566)
|++|++++|+|... .-..+..+++|++|++.+|.++.. +. .+..+|+|+.||-.
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence 99999999988632 234567889999999999988732 22 25678999998764
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.03 E-value=1e-10 Score=103.88 Aligned_cols=131 Identities=17% Similarity=0.243 Sum_probs=70.3
Q ss_pred CCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEE
Q 040451 128 NLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIF 207 (566)
Q Consensus 128 ~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~ 207 (566)
-.+.|+++|+++|.|+ .+.++..-.|.++.|++++|.+..+ ..++.+++|+.||+++|.+.....+-..+
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KL------- 351 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKL------- 351 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhh-------
Confidence 3455777777777766 5666666667777777777776522 23666666666666666655444333333
Q ss_pred cccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccc-cccccCCCCCCEEECCCCcC
Q 040451 208 IHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKV-SINFSRLQNLSRLNLGENNL 286 (566)
Q Consensus 208 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~ 286 (566)
-++++|.+.+|.+.+. ..+..+-+|..||+++|++.... ...++++|.|+.+.+.+|.+
T Consensus 352 ------------------GNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 352 ------------------GNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred ------------------cCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 3444455554444422 22333444555555555543211 12244555555555555554
Q ss_pred CC
Q 040451 287 GT 288 (566)
Q Consensus 287 ~~ 288 (566)
..
T Consensus 412 ~~ 413 (490)
T KOG1259|consen 412 AG 413 (490)
T ss_pred cc
Confidence 43
No 38
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=2.7e-12 Score=113.70 Aligned_cols=237 Identities=16% Similarity=0.130 Sum_probs=148.0
Q ss_pred CCCCCcccCccCCCCCcEEEEEcCCCCCcccCcccCcCC--CCCcEEEcCCCCCccc-cCccccCC-CCCCEEeCCCccC
Q 040451 19 INLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNL--SFPRSINLPNKSFRGE-IPHEVSNL-FRLQNLTLTNNYF 94 (566)
Q Consensus 19 ~~~c~w~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l--~~L~~L~L~~~~~~~~-~~~~~~~l-~~L~~L~l~~~~~ 94 (566)
..|-+|++..-.+ ...+.+|+.+-++. |..++.+ +.+..+.+......+. +...+.-+ +.|++|||++..+
T Consensus 123 ~VC~Rfyr~~~de--~lW~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~i 197 (419)
T KOG2120|consen 123 GVCKRFYRLASDE--SLWQTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVI 197 (419)
T ss_pred HHHHHHhhccccc--cceeeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhhe
Confidence 3577999866554 56788999987765 2333333 2355555554433322 22222222 3589999999888
Q ss_pred CCC-CCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCc-CCCC-CchhhcCCCCCCEEEeeCCcccccCc
Q 040451 95 SGK-ILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENH-LKGQ-LPASIGNLSALQEIDVRGNRLGGRIP 171 (566)
Q Consensus 95 ~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~ 171 (566)
+.. ....++.|.+|+.|.+.++++.+.+...+++-.+|+.|+++.+. ++.. ..-.+.+++.|..|++++|.......
T Consensus 198 t~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~V 277 (419)
T KOG2120|consen 198 TVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKV 277 (419)
T ss_pred eHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhh
Confidence 743 23446789999999999999988777788888999999999765 3311 12224788999999999997754322
Q ss_pred ccc-c-ccCccceeecccccccc----chhhhhCCCCCcEEEcccCcCc-ccCCccccCCCCCccEEEccCCccc-cccc
Q 040451 172 STI-S-HVRNLISFNVARNQFSG----MIPLIYNISSLQYIFIHTNRFH-GSLPLDNGVNLPNLRYFSISGNNLT-GSLQ 243 (566)
Q Consensus 172 ~~l-~-~l~~L~~L~l~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~ 243 (566)
..+ . --++|+.|+++++.-.- +......+++|.+||+++|.-. ......++ +++.|+++.++.|..- -...
T Consensus 278 tv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~~lSlsRCY~i~p~~~ 356 (419)
T KOG2120|consen 278 TVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQHLSLSRCYDIIPETL 356 (419)
T ss_pred hHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcchheeeehhhhcCCChHHe
Confidence 222 1 12678888888875221 1133446778888888776532 22222222 6677777777776322 1112
Q ss_pred cccccCCCCceEeccccc
Q 040451 244 DSLSNATNLQGLEINGNL 261 (566)
Q Consensus 244 ~~l~~l~~L~~L~l~~~~ 261 (566)
-.+...|.|.+|++.++.
T Consensus 357 ~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 357 LELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeeccCcceEEEEecccc
Confidence 234556667777776654
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.93 E-value=1.7e-09 Score=113.28 Aligned_cols=111 Identities=36% Similarity=0.535 Sum_probs=83.2
Q ss_pred cEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCC
Q 040451 453 VLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRN 532 (566)
Q Consensus 453 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 532 (566)
+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..++.+++|+.|+|++|.+++.+|+.+..+++|+.|++++|
T Consensus 421 ~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 421 DGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500 (623)
T ss_pred EEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence 56777777777777777777888888888888887777777778888888888888888777777778888888888888
Q ss_pred cccccCCccCcCC-CCCCeeeCCCCcCcccCC
Q 040451 533 NLSGHIPQYLENL-SFLSFLNLSYNHFEGKVP 563 (566)
Q Consensus 533 ~~~~~~~~~l~~~-~~L~~L~l~~~~l~~~~p 563 (566)
++++.+|..+... .++..+++.+|+.....|
T Consensus 501 ~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 501 SLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred cccccCChHHhhccccCceEEecCCccccCCC
Confidence 8877777766542 456677777776544443
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.93 E-value=7e-10 Score=77.63 Aligned_cols=61 Identities=38% Similarity=0.582 Sum_probs=35.9
Q ss_pred CCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcC
Q 040451 498 TSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF 558 (566)
Q Consensus 498 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l 558 (566)
|+|++|++++|+++...+..|..+++|+.|++++|.+....+..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3455666666666654445556666666666666666555555566666666666666653
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.87 E-value=1.7e-09 Score=75.70 Aligned_cols=61 Identities=38% Similarity=0.535 Sum_probs=50.4
Q ss_pred CCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcc
Q 040451 474 KNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNL 534 (566)
Q Consensus 474 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~ 534 (566)
|+|++|++++|.+....++.|.++++|++|++++|.++...+..|..+++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5678888888888866667888888888888888888877778888888888888888875
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=2.9e-10 Score=101.00 Aligned_cols=180 Identities=18% Similarity=0.188 Sum_probs=127.6
Q ss_pred CCCEEecccCcCCCC-CchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccch---hhhhCCCCCcEE
Q 040451 131 MLQILNIAENHLKGQ-LPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMI---PLIYNISSLQYI 206 (566)
Q Consensus 131 ~L~~L~l~~~~i~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~l~~~~~L~~L 206 (566)
.||++||+...|+.. +-..+..+.+|+.|.+.++++.+.+...+++-.+|+.|+++.+.--... -.+.+|+.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 599999999888732 3334578899999999999998777777888899999999887633222 456789999999
Q ss_pred EcccCcCcccCC-ccccCCCCCccEEEccCCccc---cccccccccCCCCceEeccccc-ccccccccccCCCCCCEEEC
Q 040451 207 FIHTNRFHGSLP-LDNGVNLPNLRYFSISGNNLT---GSLQDSLSNATNLQGLEINGNL-FSGKVSINFSRLQNLSRLNL 281 (566)
Q Consensus 207 ~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~---~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l 281 (566)
++++|.+..... ..+..--++|+.|+++|+.-. .........+|+|.+||+++|. ++......|.+++.|+++.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 999998764432 222223478999999988432 1222233568999999999874 44444556778899999999
Q ss_pred CCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCc
Q 040451 282 GENNLGTGTANDLDFITLLTNCTKLEVLDLHSNR 315 (566)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 315 (566)
+.|..- .++. ...+...|+|.+|++.++-
T Consensus 346 sRCY~i--~p~~---~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 346 SRCYDI--IPET---LLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhcCC--ChHH---eeeeccCcceEEEEecccc
Confidence 988632 2211 1345677888888887763
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.69 E-value=2.6e-09 Score=106.99 Aligned_cols=218 Identities=25% Similarity=0.311 Sum_probs=130.3
Q ss_pred cCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCE
Q 040451 55 GNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQI 134 (566)
Q Consensus 55 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~ 134 (566)
..+..++.++++.|.+. .+...+..+++|+.|++.+|.+.. +...+..+++|++|++++|.++.. ..+..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchhhhh-hhhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhh
Confidence 34566667777777776 444446777888888888887762 333367788888888888888743 34666777888
Q ss_pred EecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCc-ccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcC
Q 040451 135 LNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIP-STISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRF 213 (566)
Q Consensus 135 L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 213 (566)
|++++|.++ . ...+..++.|+.+++++|++...-+ . +..+.+++.+++++|.+.... .+.....+..+++..|.+
T Consensus 145 L~l~~N~i~-~-~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 145 LNLSGNLIS-D-ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred heeccCcch-h-ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccc
Confidence 888888877 2 3345557788888888888764322 1 466777888888877766443 112222333335555555
Q ss_pred cccCCccccCCCCC--ccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcC
Q 040451 214 HGSLPLDNGVNLPN--LRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNL 286 (566)
Q Consensus 214 ~~~~~~~~~~~~~~--L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 286 (566)
...-+.. .... |+.+++.++++.... ..+..+..+..+++..+++..... +...+.+..+....+.+
T Consensus 221 ~~~~~l~---~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~~~--~~~~~~~~~~~~~~~~~ 289 (414)
T KOG0531|consen 221 SKLEGLN---ELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNLEG--LERLPKLSELWLNDNKL 289 (414)
T ss_pred eeccCcc---cchhHHHHHHhcccCcccccc-ccccccccccccchhhcccccccc--ccccchHHHhccCcchh
Confidence 4111111 1222 677777777766331 334555666777777666542221 23334444444444443
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.69 E-value=2.5e-09 Score=107.08 Aligned_cols=201 Identities=26% Similarity=0.265 Sum_probs=106.3
Q ss_pred hccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCC-ccccCCCCCc
Q 040451 350 ANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIP-PSIGNCQNLI 428 (566)
Q Consensus 350 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~~~~L~ 428 (566)
..+++|+.|++++|.|+.. ..+..++.|+.|++++|.+.+. ..+..++.|+.+++++|.+...-+ . ...+.+++
T Consensus 115 ~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~ 189 (414)
T KOG0531|consen 115 SSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLE 189 (414)
T ss_pred hhhhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchH
Confidence 3444555555555555433 1233344455555555555411 223335555555555555542211 1 34455555
Q ss_pred EEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCC--CCCEEEccCCcccccCCcCCcCCCCCcEEeCC
Q 040451 429 LLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLK--NLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQ 506 (566)
Q Consensus 429 ~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 506 (566)
.+.+.+|.+...- .+...... ..+++..|.+....+ +..+. +|+.+++++|++. ..++.+..+..+..|++.
T Consensus 190 ~l~l~~n~i~~i~--~~~~~~~l-~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~ 263 (414)
T KOG0531|consen 190 ELDLGGNSIREIE--GLDLLKKL-VLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLS 263 (414)
T ss_pred HHhccCCchhccc--chHHHHHH-HHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchh
Confidence 5555555543111 11111111 223455555542211 22222 3788888888887 444567777888888888
Q ss_pred CCcccccCCcCCCCCCCCCEEeCCCCcccc---cCCcc-CcCCCCCCeeeCCCCcCcccCC
Q 040451 507 DNSFTRSIPSTLSSLKSITELDLSRNNLSG---HIPQY-LENLSFLSFLNLSYNHFEGKVP 563 (566)
Q Consensus 507 ~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~---~~~~~-l~~~~~L~~L~l~~~~l~~~~p 563 (566)
++.+... ..+...+.+..+....+++.. ..... ....+.++.+++.++++....+
T Consensus 264 ~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 264 SNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred hcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 8877632 356666777888888887652 22222 4566778888888887776443
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.43 E-value=7.2e-08 Score=84.95 Aligned_cols=256 Identities=21% Similarity=0.196 Sum_probs=121.7
Q ss_pred hcCCCCCCEEEeeCCcccccCccc----ccccCccceeecccccccc-----------chhhhhCCCCCcEEEcccCcCc
Q 040451 150 IGNLSALQEIDVRGNRLGGRIPST----ISHVRNLISFNVARNQFSG-----------MIPLIYNISSLQYIFIHTNRFH 214 (566)
Q Consensus 150 l~~l~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~~~-----------~~~~l~~~~~L~~L~l~~~~~~ 214 (566)
+..+..+..+++++|.+......+ +++-.+|+..++++-.... ....+..||+|+.++++.|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 334566666777766664332222 3334556666555432111 1145566777777777777665
Q ss_pred ccCCccc---cCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCC
Q 040451 215 GSLPLDN---GVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTA 291 (566)
Q Consensus 215 ~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 291 (566)
...|... .++...|++|.+.+|++....-..++. .|.+| ..| .-..+-|.|+.+.+..|.+...+.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~l--a~n-------KKaa~kp~Le~vicgrNRlengs~ 174 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFHL--AYN-------KKAADKPKLEVVICGRNRLENGSK 174 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHHH--HHH-------hhhccCCCceEEEeccchhccCcH
Confidence 4444322 234456666666666544221111110 00000 000 001233455555555555444333
Q ss_pred CChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccch-
Q 040451 292 NDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIP- 370 (566)
Q Consensus 292 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~- 370 (566)
..+. ..+.....|+.+.+..|.+.......+. ...+..+++|+.|++++|.++....
T Consensus 175 ~~~a--~~l~sh~~lk~vki~qNgIrpegv~~L~--------------------~~gl~y~~~LevLDlqDNtft~~gS~ 232 (388)
T COG5238 175 ELSA--ALLESHENLKEVKIQQNGIRPEGVTMLA--------------------FLGLFYSHSLEVLDLQDNTFTLEGSR 232 (388)
T ss_pred HHHH--HHHHhhcCceeEEeeecCcCcchhHHHH--------------------HHHHHHhCcceeeeccccchhhhhHH
Confidence 2222 2233334556666655554422111111 1123455667777777776654322
Q ss_pred ---hhccCCCCCCEEEccCCcccccCCccc------cCCCCCCeEecccCcceecCCc-----cc--cCCCCCcEEEccC
Q 040451 371 ---LAIGELKSLQMLFLNENFLRGTIPSSL------GNLTLLTQLILEVNNLQGKIPP-----SI--GNCQNLILLTTRK 434 (566)
Q Consensus 371 ---~~~~~~~~L~~L~l~~~~~~~~~~~~~------~~l~~L~~L~l~~~~l~~~~~~-----~~--~~~~~L~~L~l~~ 434 (566)
.++...+.|++|.+..|-++......+ ...|+|..|...+|...+.... .+ ..+|-|..+.+.|
T Consensus 233 ~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng 312 (388)
T COG5238 233 YLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG 312 (388)
T ss_pred HHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc
Confidence 234445566777777776654332221 1246677777776655432211 11 2456666677777
Q ss_pred Cccc
Q 040451 435 NKLS 438 (566)
Q Consensus 435 ~~l~ 438 (566)
|.+.
T Consensus 313 Nr~~ 316 (388)
T COG5238 313 NRIK 316 (388)
T ss_pred Ccch
Confidence 7665
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.40 E-value=7.3e-09 Score=103.10 Aligned_cols=196 Identities=29% Similarity=0.311 Sum_probs=120.0
Q ss_pred cCCCCEEecCCccccccc-hhhccCCCCCCEEEccCCcccccCCccccC-CCCCCeEecccCc--ce-------ecCCcc
Q 040451 352 LVNLNALGVESNQLAGTI-PLAIGELKSLQMLFLNENFLRGTIPSSLGN-LTLLTQLILEVNN--LQ-------GKIPPS 420 (566)
Q Consensus 352 l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~~~--l~-------~~~~~~ 420 (566)
+++++.+.+-...-.+-. |-.+..+.+|+.|.+.+|.+.. .. .+.. -..|+.|.-.+.- +. +.+-.+
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~-~~-GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns 160 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST-AK-GLQELRHQLEKLICHNSLDALRHVFASCGGDISNS 160 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh-hh-hhHHHHHhhhhhhhhccHHHHHHHHHHhccccccc
Confidence 344444444333222111 4566678899999999998762 11 1111 1234443222210 00 011000
Q ss_pred ccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCc-CCcCCCC
Q 040451 421 IGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPT-TLGGCTS 499 (566)
Q Consensus 421 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~ 499 (566)
+ ....|.+.+++.|.+. .+...+.-++. ++.|+++.|.+.+.. .+..++.|++|||++|.+. .+|. ...+|.
T Consensus 161 ~-~Wn~L~~a~fsyN~L~-~mD~SLqll~a-le~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~- 233 (1096)
T KOG1859|consen 161 P-VWNKLATASFSYNRLV-LMDESLQLLPA-LESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK- 233 (1096)
T ss_pred h-hhhhHhhhhcchhhHH-hHHHHHHHHHH-hhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-
Confidence 0 1135667777788775 44334333333 488888888887543 6788899999999999988 4443 334444
Q ss_pred CcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccC-CccCcCCCCCCeeeCCCCcC
Q 040451 500 LEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHI-PQYLENLSFLSFLNLSYNHF 558 (566)
Q Consensus 500 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~~~l 558 (566)
|..|++++|.++. ..++.++.+|+-||+++|-+.+.- .+-+..+.+|+.|+|.||++
T Consensus 234 L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 234 LQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred heeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 9999999998883 257888899999999999876432 13355677899999999965
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=6.6e-08 Score=86.32 Aligned_cols=204 Identities=20% Similarity=0.148 Sum_probs=112.3
Q ss_pred ccCCCCEEecCCccccc--cchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecC-CccccCCCCC
Q 040451 351 NLVNLNALGVESNQLAG--TIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKI-PPSIGNCQNL 427 (566)
Q Consensus 351 ~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~~~~~L 427 (566)
....++.+++.+|.+.+ .+...+.++|.|+.|+++.|++...+...-....+|+.|.+++..+...- ...+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 46778888998888762 23345678889999999988876322211135678888888888765433 2345667788
Q ss_pred cEEEccCCcccc--cCchhhhccCCcCcEEEccCCcceec--CCccccCCCCCCEEEccCCcccccC-CcCCcCCCCCcE
Q 040451 428 ILLTTRKNKLSG--TVPRQLLHIITLPVLLDLSDNLLNGH--FPAEVGNLKNLVSLDISSNMFSGEI-PTTLGGCTSLEY 502 (566)
Q Consensus 428 ~~L~l~~~~l~~--~~~~~~~~~~~~l~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~ 502 (566)
+.+.++.|.+.. ....+.....+-+..+....|....- ......-+|++..+.+..|++.... -..+..++.+--
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 888888774420 11112222222223334444432100 0001123466666777777665332 233445566666
Q ss_pred EeCCCCccccc-CCcCCCCCCCCCEEeCCCCcccccCCc------cCcCCCCCCeeeCC
Q 040451 503 LGMQDNSFTRS-IPSTLSSLKSITELDLSRNNLSGHIPQ------YLENLSFLSFLNLS 554 (566)
Q Consensus 503 L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~------~l~~~~~L~~L~l~ 554 (566)
|+|+.+++..- .-+.+..+++|+.|.++++++.+.... .++.+++++.|+=+
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 66666666521 113455566777777777776543221 13445555555543
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.38 E-value=5.3e-08 Score=85.77 Aligned_cols=161 Identities=18% Similarity=0.160 Sum_probs=81.0
Q ss_pred cccCCCCCCEEecccCcCCCCCchhh----cCCCCCCEEEeeCCcccccCccc-------------ccccCccceeeccc
Q 040451 125 EIGNLLMLQILNIAENHLKGQLPASI----GNLSALQEIDVRGNRLGGRIPST-------------ISHVRNLISFNVAR 187 (566)
Q Consensus 125 ~~~~l~~L~~L~l~~~~i~~~~~~~l----~~l~~L~~L~l~~~~~~~~~~~~-------------l~~l~~L~~L~l~~ 187 (566)
++-+|++|+..+||+|.+....|+.+ .+-..|.+|.+++|.+--..... .++-|.|+++.+..
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 34566777777777766654444443 44566777777777543111111 12335677777777
Q ss_pred cccccch----hh-hhCCCCCcEEEcccCcCcccC-----CccccCCCCCccEEEccCCcccccc----ccccccCCCCc
Q 040451 188 NQFSGMI----PL-IYNISSLQYIFIHTNRFHGSL-----PLDNGVNLPNLRYFSISGNNLTGSL----QDSLSNATNLQ 253 (566)
Q Consensus 188 ~~~~~~~----~~-l~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~l~~L~ 253 (566)
|++.... .. +..-..|+.+.+..|.+...- ....+ .+.+|+.|++..|.++... ..++...+.|+
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~-y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLF-YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHH-HhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 6665443 11 111235666666666554210 01111 4556666666666555332 23344445566
Q ss_pred eEecccccccccccccc------cCCCCCCEEECCCCcC
Q 040451 254 GLEINGNLFSGKVSINF------SRLQNLSRLNLGENNL 286 (566)
Q Consensus 254 ~L~l~~~~~~~~~~~~~------~~~~~L~~L~l~~~~~ 286 (566)
.|.+..|.++......+ ...|+|..|....|.+
T Consensus 246 EL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 246 ELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred hccccchhhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence 66666665543332221 2345555555555543
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.35 E-value=3.8e-09 Score=105.06 Aligned_cols=173 Identities=17% Similarity=0.223 Sum_probs=91.0
Q ss_pred cEEEEEcCCCCCcccC-cccCcCCCCCcEEEcCCCCCccc-----cCccc--------------------cC------CC
Q 040451 35 RVTGLDLRQQSVGGVL-SPFVGNLSFPRSINLPNKSFRGE-----IPHEV--------------------SN------LF 82 (566)
Q Consensus 35 ~v~~l~l~~~~~~~~~-~~~l~~l~~L~~L~L~~~~~~~~-----~~~~~--------------------~~------l~ 82 (566)
+...+.+-...-.+.. |-.|..|+.|++|.|+++.+... +...+ +. .-
T Consensus 85 kt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn 164 (1096)
T KOG1859|consen 85 KTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWN 164 (1096)
T ss_pred hheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhh
Confidence 3444554444433333 56778888999999988876521 00000 00 11
Q ss_pred CCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEee
Q 040451 83 RLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVR 162 (566)
Q Consensus 83 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~ 162 (566)
.|.+.+.++|.+. ..-.++.-++.|+.|+|++|++++. ..+..|++|++|||+.|.++ .+|..=..-..|+.|.++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeec
Confidence 2344444444443 2233344556666666666666532 24566666666666666665 333221111236666666
Q ss_pred CCcccccCcccccccCccceeeccccccccch--hhhhCCCCCcEEEcccCcC
Q 040451 163 GNRLGGRIPSTISHVRNLISFNVARNQFSGMI--PLIYNISSLQYIFIHTNRF 213 (566)
Q Consensus 163 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~l~~~~~ 213 (566)
+|.++. ..++.++++|+.||++.|-+.+.. ..+..+..|+.|++.+|++
T Consensus 241 nN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 241 NNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 665542 234556666666666666555433 4455555666666666654
No 50
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.34 E-value=2.4e-08 Score=93.24 Aligned_cols=279 Identities=19% Similarity=0.111 Sum_probs=137.0
Q ss_pred CCceEeccccccccccc--ccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccC-ccccccchhHhhc
Q 040451 251 NLQGLEINGNLFSGKVS--INFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSN-RFGGVLPFSLANL 327 (566)
Q Consensus 251 ~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~ 327 (566)
.|+.|.+.+++-.+.-+ ..-..+++++.|.+.++...+ +......-..|+.|+++++..| .+++.....++.-
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iT----d~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g 214 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKIT----DSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG 214 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceecc----HHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence 57778888776432222 112467788888777776221 2223344456788888888875 4665555556666
Q ss_pred cccccEEEccccCcc-C-ccchhhhccCCCCEEecCCcccccc--chhhccCCCCCCEEEccCCc-ccccCC-ccccCCC
Q 040451 328 SITMTEIANGSNQIS-G-TIPDVIANLVNLNALGVESNQLAGT--IPLAIGELKSLQMLFLNENF-LRGTIP-SSLGNLT 401 (566)
Q Consensus 328 ~~~l~~l~l~~~~~~-~-~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~-~~~~~~-~~~~~l~ 401 (566)
.++++++.++-|... + -+....+++..++++...+|.-.+. +...-+.+..+.++++..|. ++++.. ..-..+.
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH 294 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence 667777766655432 1 1222344555566666665532111 11122344555666655553 232211 1112356
Q ss_pred CCCeEecccCcc-eecCCccc-cCCCCCcEEEccCCcc-cccCchhhhccCCcCcEEEccCCcceec--CCccccCCCCC
Q 040451 402 LLTQLILEVNNL-QGKIPPSI-GNCQNLILLTTRKNKL-SGTVPRQLLHIITLPVLLDLSDNLLNGH--FPAEVGNLKNL 476 (566)
Q Consensus 402 ~L~~L~l~~~~l-~~~~~~~~-~~~~~L~~L~l~~~~l-~~~~~~~~~~~~~~l~~L~l~~~~~~~~--~~~~l~~~~~L 476 (566)
.|+.+..+++.- +...-.++ .++.+|+.+.+.+|+. ++.--..+......++.+++..|..... +...-.+++.|
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL 374 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence 677777766642 21111222 3566777777777752 2112222333333335555555543211 11112345556
Q ss_pred CEEEccCCccc-cc----CCcCCcCCCCCcEEeCCCCccc-ccCCcCCCCCCCCCEEeCCCCc
Q 040451 477 VSLDISSNMFS-GE----IPTTLGGCTSLEYLGMQDNSFT-RSIPSTLSSLKSITELDLSRNN 533 (566)
Q Consensus 477 ~~L~l~~~~~~-~~----~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~n~ 533 (566)
+.|.+++|... +. ....-.++..|+.+.+++|+.+ +...+.+..+++|+.+++.+|.
T Consensus 375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 66666655432 11 0111233445555566555433 2333444555566666665554
No 51
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.32 E-value=2.9e-08 Score=92.75 Aligned_cols=258 Identities=17% Similarity=0.108 Sum_probs=119.5
Q ss_pred cccCccceeeccccccccch---hhhhCCCCCcEEEcccCc-CcccCCccccCCCCCccEEEccCCc-ccccccc-cccc
Q 040451 175 SHVRNLISFNVARNQFSGMI---PLIYNISSLQYIFIHTNR-FHGSLPLDNGVNLPNLRYFSISGNN-LTGSLQD-SLSN 248 (566)
Q Consensus 175 ~~l~~L~~L~l~~~~~~~~~---~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~-~l~~ 248 (566)
..++++++|++.+|...+.. ..-..++.|+++++..|. ++..........+++|++|++++|. +.+.... ...+
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 34555555555555422211 222345556666555532 2322222233456666666666652 2221111 1233
Q ss_pred CCCCceEeccccccccccc--ccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCc-cccccchhHh
Q 040451 249 ATNLQGLEINGNLFSGKVS--INFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNR-FGGVLPFSLA 325 (566)
Q Consensus 249 l~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~ 325 (566)
+..++.+...+|.-.+.-. ..-...+.+.++++..|... ++......-..+..|++++.+++. +++.....+.
T Consensus 241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~l----TD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg 316 (483)
T KOG4341|consen 241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQL----TDEDLWLIACGCHALQVLCYSSCTDITDEVLWALG 316 (483)
T ss_pred chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccc----cchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh
Confidence 4444555444442110000 00022233444444444211 111222233345566666666663 3333344455
Q ss_pred hccccccEEEccccCccC-ccchh-hhccCCCCEEecCCcccccc--chhhccCCCCCCEEEccCCcc-cccC----Ccc
Q 040451 326 NLSITMTEIANGSNQISG-TIPDV-IANLVNLNALGVESNQLAGT--IPLAIGELKSLQMLFLNENFL-RGTI----PSS 396 (566)
Q Consensus 326 ~~~~~l~~l~l~~~~~~~-~~~~~-l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~-~~~~----~~~ 396 (566)
.-..+++.+.+..|+.-. .-... =.+++.|+.+++..+..... +...-.+++.|+++.++.|.. ++.. ...
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~ 396 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS 396 (483)
T ss_pred cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence 555566666666655211 11111 13566677777777643311 222334567777777777653 2221 112
Q ss_pred ccCCCCCCeEecccCcce-ecCCccccCCCCCcEEEccCCc
Q 040451 397 LGNLTLLTQLILEVNNLQ-GKIPPSIGNCQNLILLTTRKNK 436 (566)
Q Consensus 397 ~~~l~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~~~ 436 (566)
-..+..|+.+.+++++.. ......+..|++|+.+++.+|.
T Consensus 397 ~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 397 SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred cccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 234566777777777643 2333455667777777776664
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=2e-07 Score=83.27 Aligned_cols=83 Identities=23% Similarity=0.279 Sum_probs=34.5
Q ss_pred CCCCCEEeCCCccCCCC--CCcccccCCCCCEEEccCCcccccCCccc-cCCCCCCEEecccCcCCCC-CchhhcCCCCC
Q 040451 81 LFRLQNLTLTNNYFSGK--ILTDLSHCSNVMKFEASNNKLEAEIPVEI-GNLLMLQILNIAENHLKGQ-LPASIGNLSAL 156 (566)
Q Consensus 81 l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~~~~~~-~~l~~L~~L~l~~~~i~~~-~~~~l~~l~~L 156 (566)
.+.++.+||.+|.++.. +...+.++|.|++|+++.|.+...+ ... ....+|++|-|.++.+... ....+..+|.+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 34455555555554421 1122344555555555555443211 111 2333455555554443321 12223344444
Q ss_pred CEEEeeCC
Q 040451 157 QEIDVRGN 164 (566)
Q Consensus 157 ~~L~l~~~ 164 (566)
+.|.++.|
T Consensus 149 telHmS~N 156 (418)
T KOG2982|consen 149 TELHMSDN 156 (418)
T ss_pred hhhhhccc
Confidence 55544444
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.10 E-value=1.3e-07 Score=74.44 Aligned_cols=103 Identities=19% Similarity=0.317 Sum_probs=54.8
Q ss_pred EEccCCcceecCCccc-cCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCc
Q 040451 455 LDLSDNLLNGHFPAEV-GNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNN 533 (566)
Q Consensus 455 L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 533 (566)
+++++|.+.+. |..| ..++.++.|++.+|.++ .+|+.+..++.|+.|+++.|++. ..|..+..+.+|-.|+..+|.
T Consensus 58 i~ls~N~fk~f-p~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 58 ISLSDNGFKKF-PKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred EecccchhhhC-CHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCc
Confidence 44444444422 2222 33445666666666666 55555666666666666666666 345555556666666666666
Q ss_pred ccccCCccCcCCCCCCeeeCCCCcCccc
Q 040451 534 LSGHIPQYLENLSFLSFLNLSYNHFEGK 561 (566)
Q Consensus 534 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 561 (566)
+.....+.| -....-..++.++++.++
T Consensus 135 ~~eid~dl~-~s~~~al~~lgnepl~~~ 161 (177)
T KOG4579|consen 135 RAEIDVDLF-YSSLPALIKLGNEPLGDE 161 (177)
T ss_pred cccCcHHHh-ccccHHHHHhcCCccccc
Confidence 653332322 122333444455555544
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.10 E-value=1.1e-05 Score=77.82 Aligned_cols=137 Identities=13% Similarity=0.153 Sum_probs=73.1
Q ss_pred hhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccC-cceecCCccccCCCCC
Q 040451 349 IANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVN-NLQGKIPPSIGNCQNL 427 (566)
Q Consensus 349 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~L 427 (566)
+..+..++.|++++|.++. +| .-.++|++|.+++|.-...+|..+. ++|+.|.+++| .+. .+| ++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP---~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP------~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LP---VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLP------ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cC---CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccc------ccc
Confidence 4456777888888776663 33 1234688888877654335555442 57777777777 343 333 346
Q ss_pred cEEEccCCcccccCchhhhccCCcCcEEEccCCcce--ecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeC
Q 040451 428 ILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLN--GHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGM 505 (566)
Q Consensus 428 ~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 505 (566)
+.|++.++... .+..++..++.|.+.+++.. ...+..+. ++|++|++++|... ..|+.+. .+|+.|++
T Consensus 115 e~L~L~~n~~~-----~L~~LPssLk~L~I~~~n~~~~~~lp~~LP--sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 115 RSLEIKGSATD-----SIKNVPNGLTSLSINSYNPENQARIDNLIS--PSLKTLSLTGCSNI-ILPEKLP--ESLQSITL 184 (426)
T ss_pred ceEEeCCCCCc-----ccccCcchHhheeccccccccccccccccC--CcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence 66666554432 12233333455555332211 01111111 46777777776655 4444444 57777777
Q ss_pred CCC
Q 040451 506 QDN 508 (566)
Q Consensus 506 ~~~ 508 (566)
+.+
T Consensus 185 s~n 187 (426)
T PRK15386 185 HIE 187 (426)
T ss_pred ccc
Confidence 655
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.01 E-value=8.6e-06 Score=69.02 Aligned_cols=101 Identities=23% Similarity=0.156 Sum_probs=71.6
Q ss_pred cEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccC-CcCCCCCCCCCEEeCCC
Q 040451 453 VLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSI-PSTLSSLKSITELDLSR 531 (566)
Q Consensus 453 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~ 531 (566)
..+|+++|.+... ..|..++.|.+|.+++|.|+.+.|..-..++.|..|.+.+|.+.+.. .+.+..||.|+.|.+-+
T Consensus 45 d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 45 DAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 5678888877633 34778888888888888888666655555677888888888776422 24577788888888888
Q ss_pred CcccccC---CccCcCCCCCCeeeCCC
Q 040451 532 NNLSGHI---PQYLENLSFLSFLNLSY 555 (566)
Q Consensus 532 n~~~~~~---~~~l~~~~~L~~L~l~~ 555 (566)
|+++.-- .-.+..+|+|+.||.++
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehhh
Confidence 8886321 12356778888888664
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.98 E-value=1.1e-06 Score=92.01 Aligned_cols=152 Identities=14% Similarity=0.224 Sum_probs=67.7
Q ss_pred cEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCcccc------------Cccc---cCCCCCCEEeCCCccC-CCCC
Q 040451 35 RVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEI------------PHEV---SNLFRLQNLTLTNNYF-SGKI 98 (566)
Q Consensus 35 ~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~------------~~~~---~~l~~L~~L~l~~~~~-~~~~ 98 (566)
++..+++.+..+....-..+.+.. |++|.|.+-...... ...+ ..-.+|++||+++... ...-
T Consensus 61 ~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W 139 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGW 139 (699)
T ss_pred eeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccH
Confidence 566666666555443333334444 666666543221110 0000 0124566666666432 1111
Q ss_pred Cccc-ccCCCCCEEEccCCcccc-cCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccc-cCccccc
Q 040451 99 LTDL-SHCSNVMKFEASNNKLEA-EIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGG-RIPSTIS 175 (566)
Q Consensus 99 ~~~~-~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~ 175 (566)
+..+ ..+|.|+.|.+++-.+.. .......+.++|+.||+++++++. + ..++++++|+.|.+++-.+.. .....+-
T Consensus 140 ~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF 217 (699)
T KOG3665|consen 140 PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRNLEFESYQDLIDLF 217 (699)
T ss_pred HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHHHhccCCCCCchhhHHHHh
Confidence 2222 355666666665544321 112223445555555555555552 2 455555555555555544331 1112234
Q ss_pred ccCccceeeccccc
Q 040451 176 HVRNLISFNVARNQ 189 (566)
Q Consensus 176 ~l~~L~~L~l~~~~ 189 (566)
+|++|+.||++...
T Consensus 218 ~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 218 NLKKLRVLDISRDK 231 (699)
T ss_pred cccCCCeeeccccc
Confidence 45555555555443
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.88 E-value=5.9e-05 Score=72.89 Aligned_cols=54 Identities=22% Similarity=0.253 Sum_probs=23.4
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCC
Q 040451 376 LKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKN 435 (566)
Q Consensus 376 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 435 (566)
+.++++|++++|.++ .+|. -..+|++|.+++|.--..+|..+ .++|+.|.+++|
T Consensus 51 ~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 445555555555444 3331 12345555555443222333222 234555555555
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.86 E-value=1.8e-05 Score=50.42 Aligned_cols=34 Identities=26% Similarity=0.631 Sum_probs=12.2
Q ss_pred CCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcc
Q 040451 132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRL 166 (566)
Q Consensus 132 L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~ 166 (566)
|++|++++|+++ .+|..+.++++|++|++++|++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence 333333333333 2333333344444444443333
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.85 E-value=1.1e-06 Score=69.34 Aligned_cols=130 Identities=20% Similarity=0.235 Sum_probs=78.7
Q ss_pred CcEEEEEcCCCCCccc--CcccCcCCCCCcEEEcCCCCCccccCccc-cCCCCCCEEeCCCccCCCCCCcccccCCCCCE
Q 040451 34 QRVTGLDLRQQSVGGV--LSPFVGNLSFPRSINLPNKSFRGEIPHEV-SNLFRLQNLTLTNNYFSGKILTDLSHCSNVMK 110 (566)
Q Consensus 34 ~~v~~l~l~~~~~~~~--~~~~l~~l~~L~~L~L~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 110 (566)
.....++|+.+.+... .+..+.+..+|+..+|++|.+. .+|..| .+++.++.|++++|.++ +.|..+..++.|+.
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 3455566666655411 2234455566667777777777 555443 45567777777777776 56666777777777
Q ss_pred EEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCccc
Q 040451 111 FEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLG 167 (566)
Q Consensus 111 L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~ 167 (566)
|+++.|.+. ..|..+..+.+|-+|+..++.+. .++-.+-.-.+....++.++.+.
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~ 159 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLG 159 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCccc
Confidence 777777776 55666767777777777777666 34443322223333334444443
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.82 E-value=2.5e-05 Score=49.68 Aligned_cols=37 Identities=32% Similarity=0.605 Sum_probs=27.7
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCCEEecccCcCC
Q 040451 106 SNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLK 143 (566)
Q Consensus 106 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 143 (566)
++|++|++++|+++ .+|..++++++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 46888888888887 56666888888888888888877
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.80 E-value=8.8e-06 Score=85.39 Aligned_cols=134 Identities=22% Similarity=0.274 Sum_probs=64.8
Q ss_pred CCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccc-cccccccCCCCCCE
Q 040451 200 ISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSG-KVSINFSRLQNLSR 278 (566)
Q Consensus 200 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~ 278 (566)
+|+|+.|.+.+-.+...-......++|+|..|++++++++.. ..++.+++|+.|.+.+-.+.. .....+-++++|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 455555555544332211112223556666666666665533 345555666666555544432 11223445666666
Q ss_pred EECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEE
Q 040451 279 LNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIA 335 (566)
Q Consensus 279 L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~ 335 (566)
|++|.................-..+|.|+.|+.++..+.+...+.+....++++.+.
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 666655433322111111122234667777777776666555554444444444444
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.78 E-value=4.7e-05 Score=64.68 Aligned_cols=12 Identities=33% Similarity=0.631 Sum_probs=6.0
Q ss_pred CCCCccEEEccC
Q 040451 224 NLPNLRYFSISG 235 (566)
Q Consensus 224 ~~~~L~~L~l~~ 235 (566)
.+|+|+.|+...
T Consensus 138 klp~l~~LDF~k 149 (233)
T KOG1644|consen 138 KLPSLRTLDFQK 149 (233)
T ss_pred ecCcceEeehhh
Confidence 345555555544
No 63
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=97.43 E-value=4.6e-05 Score=48.38 Aligned_cols=30 Identities=57% Similarity=1.132 Sum_probs=22.5
Q ss_pred CccCCC-CCCCCCCCCCCC--CCCCCcccCccC
Q 040451 1 MKSQLQ-DPLGVTSSWNNS--INLCQWTGVTCG 30 (566)
Q Consensus 1 ~~~~~~-~~~~~~~~w~~~--~~~c~w~~~~~~ 30 (566)
||.++. +|..++.+|+.+ .++|.|.||+|.
T Consensus 11 ~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 11 FKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred HHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 678888 789999999987 799999999993
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.39 E-value=0.00056 Score=56.22 Aligned_cols=37 Identities=22% Similarity=0.472 Sum_probs=12.4
Q ss_pred CCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCC
Q 040451 493 TLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSR 531 (566)
Q Consensus 493 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 531 (566)
+|..++.|+.+++..+ +.......|.++ .|+.+.+..
T Consensus 76 ~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 76 AFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 3444444444444332 222233334443 444444443
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.39 E-value=0.0006 Score=56.03 Aligned_cols=82 Identities=17% Similarity=0.290 Sum_probs=28.3
Q ss_pred cccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCC
Q 040451 469 EVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFL 548 (566)
Q Consensus 469 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L 548 (566)
.|..+++|+.+.+.++ +......+|.++++|+.+.+.+ .+.......|..+++|+.+++..+ +.......+.++ .|
T Consensus 30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l 105 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NL 105 (129)
T ss_dssp TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T-
T ss_pred hccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-Cc
Confidence 3444444444444443 3323333444444444444433 222223334444444444444433 332333334443 44
Q ss_pred CeeeCC
Q 040451 549 SFLNLS 554 (566)
Q Consensus 549 ~~L~l~ 554 (566)
+.+.+.
T Consensus 106 ~~i~~~ 111 (129)
T PF13306_consen 106 KEINIP 111 (129)
T ss_dssp -EEE-T
T ss_pred eEEEEC
Confidence 444443
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.35 E-value=0.00012 Score=65.07 Aligned_cols=82 Identities=21% Similarity=0.333 Sum_probs=43.4
Q ss_pred ccCCCCCCEEecccC--cCCCCCchhhcCCCCCCEEEeeCCcccccCccc---ccccCccceeeccccccccch----hh
Q 040451 126 IGNLLMLQILNIAEN--HLKGQLPASIGNLSALQEIDVRGNRLGGRIPST---ISHVRNLISFNVARNQFSGMI----PL 196 (566)
Q Consensus 126 ~~~l~~L~~L~l~~~--~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~----~~ 196 (566)
+..+++|++|.++.| ++.+.++.....+++|+++++++|++.. ++. +..+.+|..|++.+|...... ..
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~v 138 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREKV 138 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHHH
Confidence 445556666666666 4444444444455666666666666541 222 334555666666666554433 23
Q ss_pred hhCCCCCcEEEcc
Q 040451 197 IYNISSLQYIFIH 209 (566)
Q Consensus 197 l~~~~~L~~L~l~ 209 (566)
+.-+++|++|+-.
T Consensus 139 f~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 139 FLLLPSLKYLDGC 151 (260)
T ss_pred HHHhhhhcccccc
Confidence 3445666666543
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.20 E-value=0.00025 Score=63.11 Aligned_cols=40 Identities=28% Similarity=0.382 Sum_probs=18.3
Q ss_pred CCCCCCEEeCCCc--cCCCCCCcccccCCCCCEEEccCCccc
Q 040451 80 NLFRLQNLTLTNN--YFSGKILTDLSHCSNVMKFEASNNKLE 119 (566)
Q Consensus 80 ~l~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~L~~~~~~ 119 (566)
.+++|+.|.++.| ++...+..-...+++|++|++++|++.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 3445555555555 333223333334455555555555443
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.16 E-value=4.4e-05 Score=78.98 Aligned_cols=129 Identities=12% Similarity=0.072 Sum_probs=72.5
Q ss_pred CCCCCCEEeCCCccCCCC--CCcccccCCCCCEEEccCC-ccccc----CCccccCCCCCCEEecccCc-CCCCCchhhc
Q 040451 80 NLFRLQNLTLTNNYFSGK--ILTDLSHCSNVMKFEASNN-KLEAE----IPVEIGNLLMLQILNIAENH-LKGQLPASIG 151 (566)
Q Consensus 80 ~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~-i~~~~~~~l~ 151 (566)
.++.|+.|.+.++.-... .......++.|+.|+++++ ..... .......+++|+.|+++.+. ++...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 467777777777743222 2344567777888887763 11111 11233456777788887776 5544444443
Q ss_pred C-CCCCCEEEeeCCc-ccccCcc-cccccCccceeeccccccccch---hhhhCCCCCcEEEc
Q 040451 152 N-LSALQEIDVRGNR-LGGRIPS-TISHVRNLISFNVARNQFSGMI---PLIYNISSLQYIFI 208 (566)
Q Consensus 152 ~-l~~L~~L~l~~~~-~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~---~~l~~~~~L~~L~l 208 (566)
. +++|++|.+.++. +++.... ....++.|++|+++.|...... .....+++++.+.+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 3 6778888776665 3332222 2345677888888777653221 33445666666543
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.01 E-value=8e-05 Score=77.00 Aligned_cols=221 Identities=18% Similarity=0.078 Sum_probs=97.9
Q ss_pred ccccEEEccccCccCc--cchhhhccCCCCEEecCCc-cccccc----hhhccCCCCCCEEEccCCc-ccccCCccccC-
Q 040451 329 ITMTEIANGSNQISGT--IPDVIANLVNLNALGVESN-QLAGTI----PLAIGELKSLQMLFLNENF-LRGTIPSSLGN- 399 (566)
Q Consensus 329 ~~l~~l~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~-~~~~~~----~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~- 399 (566)
+.++.+.+..+.-... .......++.|+.|+++++ ...... ......+.+|+.++++.+. +++.....+..
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 4555565555533222 2233445566666666652 111010 1122334566666666665 44333333322
Q ss_pred CCCCCeEecccCc-ceecC-CccccCCCCCcEEEccCCccc-ccCchhhhccCCcCcEEEccCCcceecCCccccCCCCC
Q 040451 400 LTLLTQLILEVNN-LQGKI-PPSIGNCQNLILLTTRKNKLS-GTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNL 476 (566)
Q Consensus 400 l~~L~~L~l~~~~-l~~~~-~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L 476 (566)
+++|++|.+..|. ++... ......+++|++|++++|... +..-..+....+.++.+.+.. ...++.+
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~----------~~~c~~l 337 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS----------LNGCPSL 337 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh----------cCCCccH
Confidence 5566666655554 33221 122334556666666655432 110111111111111111111 1112333
Q ss_pred CEEEccCCccc---ccCCcCCcCCCCCcEEeCCCCcccccC-CcCCCCCCC--------------CCEEeCCCCccccc-
Q 040451 477 VSLDISSNMFS---GEIPTTLGGCTSLEYLGMQDNSFTRSI-PSTLSSLKS--------------ITELDLSRNNLSGH- 537 (566)
Q Consensus 477 ~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~--------------L~~L~l~~n~~~~~- 537 (566)
+.+.+.++... .........++.++.+.+.++...+.. ...+..++. ++.|+++.|.....
T Consensus 338 ~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~ 417 (482)
T KOG1947|consen 338 TDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDK 417 (482)
T ss_pred HHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCcccccc
Confidence 34433332221 111223566777777777777644322 133344444 47777777765422
Q ss_pred CCccCcC-CCCCCeeeCCCCcCc
Q 040451 538 IPQYLEN-LSFLSFLNLSYNHFE 559 (566)
Q Consensus 538 ~~~~l~~-~~~L~~L~l~~~~l~ 559 (566)
....... +..++.+++++++..
T Consensus 418 ~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 418 GLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred chHHHhhhhhccccCCccCcccc
Confidence 2222222 556777777777654
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=3.3e-05 Score=68.79 Aligned_cols=97 Identities=16% Similarity=0.223 Sum_probs=49.5
Q ss_pred CCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccC-cccccccCccceeec
Q 040451 107 NVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRI-PSTISHVRNLISFNV 185 (566)
Q Consensus 107 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l 185 (566)
+.+.|+.-+|.+++. ....+++.|++|.|+-|+|+. -+.+..|++|++|.|+.|.|.... ...+.++++|+.|++
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 334444555544421 223455666666666666652 234556666666666666654211 123455666666666
Q ss_pred cccccccch------hhhhCCCCCcEEE
Q 040451 186 ARNQFSGMI------PLIYNISSLQYIF 207 (566)
Q Consensus 186 ~~~~~~~~~------~~l~~~~~L~~L~ 207 (566)
..|.-.+.. ..+..+|+|++||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 665543322 2344455666554
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.00013 Score=65.22 Aligned_cols=85 Identities=25% Similarity=0.261 Sum_probs=44.3
Q ss_pred CCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCC
Q 040451 226 PNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTK 305 (566)
Q Consensus 226 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~ 305 (566)
.+.++|+..+|+++++ .....++.|+.|.++-|.++...+ +..+++|++|+|..|.|.. +..+..+.++|+
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~s-----ldEL~YLknlps 89 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIES-----LDELEYLKNLPS 89 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhccccc-----HHHHHHHhcCch
Confidence 3445555555555533 223445556666665555543222 4555566666665555432 222345556666
Q ss_pred CCEEEcccCccccc
Q 040451 306 LEVLDLHSNRFGGV 319 (566)
Q Consensus 306 L~~L~l~~~~~~~~ 319 (566)
|+.|.+..|.-.+.
T Consensus 90 Lr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 90 LRTLWLDENPCCGE 103 (388)
T ss_pred hhhHhhccCCcccc
Confidence 66666666654433
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=0.0006 Score=58.19 Aligned_cols=83 Identities=19% Similarity=0.161 Sum_probs=58.5
Q ss_pred cEEEccCCcceecCCccccCCCCCCEEEccCCcccccC--CcCCcCCCCCcEEeCCCC-cccccCCcCCCCCCCCCEEeC
Q 040451 453 VLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEI--PTTLGGCTSLEYLGMQDN-SFTRSIPSTLSSLKSITELDL 529 (566)
Q Consensus 453 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l 529 (566)
+.+|.+++.|.....+.+..+++++.|.+.+|+-.+.. ...=+..++|++|+|++| +||+....++..+++|+.|.+
T Consensus 104 eaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l 183 (221)
T KOG3864|consen 104 EAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHL 183 (221)
T ss_pred EEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHh
Confidence 67888888887666667778888888888888654221 000113478888888888 677766677788888888888
Q ss_pred CCCccc
Q 040451 530 SRNNLS 535 (566)
Q Consensus 530 ~~n~~~ 535 (566)
++-+..
T Consensus 184 ~~l~~v 189 (221)
T KOG3864|consen 184 YDLPYV 189 (221)
T ss_pred cCchhh
Confidence 776643
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.62 E-value=0.00093 Score=57.07 Aligned_cols=83 Identities=20% Similarity=0.125 Sum_probs=63.1
Q ss_pred CCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccc-cCCcCCC-CCCCCCEEeCCCCc-ccccCCccCcCCCCCCee
Q 040451 475 NLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTR-SIPSTLS-SLKSITELDLSRNN-LSGHIPQYLENLSFLSFL 551 (566)
Q Consensus 475 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~-~l~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~L 551 (566)
.++.+|-+++.|..+.-+.+..+++++.|.+.+|.-.+ --.+.++ -.++|+.|++++|+ |++....++..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 47889999999987777888888999999998885432 1112222 24899999999996 776777888889999998
Q ss_pred eCCCCc
Q 040451 552 NLSYNH 557 (566)
Q Consensus 552 ~l~~~~ 557 (566)
.+.+=+
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 887644
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.36 E-value=7.5e-05 Score=75.04 Aligned_cols=66 Identities=29% Similarity=0.338 Sum_probs=35.6
Q ss_pred cCCCC-CCEEEccCCccccc----CCcCCcCC-CCCcEEeCCCCcccccCC----cCCCCCCCCCEEeCCCCcccc
Q 040451 471 GNLKN-LVSLDISSNMFSGE----IPTTLGGC-TSLEYLGMQDNSFTRSIP----STLSSLKSITELDLSRNNLSG 536 (566)
Q Consensus 471 ~~~~~-L~~L~l~~~~~~~~----~~~~~~~~-~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~n~~~~ 536 (566)
...++ +.+|++.+|.+.+. ....+..+ ..++++++++|.+++... +.+..++.++.+.+++|++..
T Consensus 229 ~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 229 ASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 33344 55566666666532 22334444 566666666666664322 234455566666666666653
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.72 E-value=0.014 Score=30.59 Aligned_cols=12 Identities=25% Similarity=0.343 Sum_probs=5.2
Q ss_pred CCEEEccCCccc
Q 040451 108 VMKFEASNNKLE 119 (566)
Q Consensus 108 L~~L~L~~~~~~ 119 (566)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 76
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.55 E-value=0.016 Score=30.44 Aligned_cols=10 Identities=40% Similarity=0.806 Sum_probs=3.7
Q ss_pred EEeCCCCccc
Q 040451 502 YLGMQDNSFT 511 (566)
Q Consensus 502 ~L~l~~~~~~ 511 (566)
+|+|++|+++
T Consensus 4 ~Ldls~n~l~ 13 (22)
T PF00560_consen 4 YLDLSGNNLT 13 (22)
T ss_dssp EEEETSSEES
T ss_pred EEECCCCcCE
Confidence 3333333333
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.07 E-value=0.00042 Score=69.75 Aligned_cols=116 Identities=24% Similarity=0.234 Sum_probs=60.1
Q ss_pred hhhhccCCCCEEecCCcccccc----chhhcc----CCCCCCEEEccCCcccccC----CccccCCCC-CCeEecccCcc
Q 040451 347 DVIANLVNLNALGVESNQLAGT----IPLAIG----ELKSLQMLFLNENFLRGTI----PSSLGNLTL-LTQLILEVNNL 413 (566)
Q Consensus 347 ~~l~~l~~L~~L~l~~~~~~~~----~~~~~~----~~~~L~~L~l~~~~~~~~~----~~~~~~l~~-L~~L~l~~~~l 413 (566)
..+....+++.++++.|.+... .+..+. ...++++|.+++|.++... ...+...++ +.++++..|++
T Consensus 166 ~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l 245 (478)
T KOG4308|consen 166 AVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKL 245 (478)
T ss_pred HHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCc
Confidence 4455567777777777766321 122222 3566777777777765221 122333444 55677777766
Q ss_pred eec----CCccccCC-CCCcEEEccCCcccccCchhhh----ccCCcCcEEEccCCcce
Q 040451 414 QGK----IPPSIGNC-QNLILLTTRKNKLSGTVPRQLL----HIITLPVLLDLSDNLLN 463 (566)
Q Consensus 414 ~~~----~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~----~~~~~l~~L~l~~~~~~ 463 (566)
... ....+..+ ..++.+++..|++++.....+. ... .++.+.+++|.+.
T Consensus 246 ~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~-~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 246 GDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCR-QLEELSLSNNPLT 303 (478)
T ss_pred chHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhH-HHHHhhcccCccc
Confidence 532 11223333 4556666777766644333222 222 2355566666554
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.76 E-value=0.031 Score=27.16 Aligned_cols=12 Identities=42% Similarity=0.443 Sum_probs=5.2
Q ss_pred CCCeeeCCCCcC
Q 040451 547 FLSFLNLSYNHF 558 (566)
Q Consensus 547 ~L~~L~l~~~~l 558 (566)
+|+.|+|++|++
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 455555555554
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.71 E-value=0.00099 Score=58.08 Aligned_cols=87 Identities=14% Similarity=0.177 Sum_probs=55.2
Q ss_pred ccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCC
Q 040451 78 VSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQ 157 (566)
Q Consensus 78 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~ 157 (566)
+..+...+.||++.|++. .+-..|+.+..|..|+++.|.+. ..|..++++..++.+++..|..+ ..|.+++..++++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 344555556666666544 23334555556666666666655 56667777777777777777666 6777777777777
Q ss_pred EEEeeCCccc
Q 040451 158 EIDVRGNRLG 167 (566)
Q Consensus 158 ~L~l~~~~~~ 167 (566)
+++..++.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 7777776643
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.52 E-value=0.0029 Score=55.29 Aligned_cols=88 Identities=13% Similarity=0.113 Sum_probs=45.5
Q ss_pred cCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCC
Q 040451 53 FVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLML 132 (566)
Q Consensus 53 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L 132 (566)
.+..+.+.+.|+++.|+.. .+-..|+.++.+.+||++.|.+. ..|.++.....++.+++..|... ..|.++++.+++
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 3445555555555555544 33333444455555555555554 44555555555555555555444 455555555555
Q ss_pred CEEecccCcCC
Q 040451 133 QILNIAENHLK 143 (566)
Q Consensus 133 ~~L~l~~~~i~ 143 (566)
+++++.++.++
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 55555555443
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.53 E-value=0.36 Score=26.37 Aligned_cols=16 Identities=50% Similarity=0.644 Sum_probs=9.2
Q ss_pred CCCCEEeCCCCccccc
Q 040451 522 KSITELDLSRNNLSGH 537 (566)
Q Consensus 522 ~~L~~L~l~~n~~~~~ 537 (566)
++|+.|++++|.+...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4556666666666533
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.53 E-value=0.36 Score=26.37 Aligned_cols=16 Identities=50% Similarity=0.644 Sum_probs=9.2
Q ss_pred CCCCEEeCCCCccccc
Q 040451 522 KSITELDLSRNNLSGH 537 (566)
Q Consensus 522 ~~L~~L~l~~n~~~~~ 537 (566)
++|+.|++++|.+...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4556666666666533
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=82.27 E-value=0.73 Score=24.55 Aligned_cols=18 Identities=33% Similarity=0.394 Sum_probs=9.5
Q ss_pred CCCCEEEcccCccccccc
Q 040451 304 TKLEVLDLHSNRFGGVLP 321 (566)
Q Consensus 304 ~~L~~L~l~~~~~~~~~~ 321 (566)
++|+.|++++|.+++...
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 566667776666654433
No 84
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=79.05 E-value=5.1 Score=39.62 Aligned_cols=109 Identities=22% Similarity=0.145 Sum_probs=61.4
Q ss_pred CcEEEccCCcceecCCc--cccCCCCCCEEEccCCccccc-CCcCC--------cCCCCCcEEeCCCCcccccCCc---C
Q 040451 452 PVLLDLSDNLLNGHFPA--EVGNLKNLVSLDISSNMFSGE-IPTTL--------GGCTSLEYLGMQDNSFTRSIPS---T 517 (566)
Q Consensus 452 l~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~-~~~~~--------~~~~~L~~L~l~~~~~~~~~~~---~ 517 (566)
++++...+|+..+.... .+.+-++.+.+++..-.-... .+... ...--+..+.++.|+....... .
T Consensus 356 ~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~ 435 (553)
T KOG4242|consen 356 VQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINK 435 (553)
T ss_pred eeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHh
Confidence 36677777776554332 233445666666665332111 00000 1112367778888877643222 2
Q ss_pred CCCCCCCCEEeCCCCcccc----cCCccCcCCCCCCeeeCCCCcCcc
Q 040451 518 LSSLKSITELDLSRNNLSG----HIPQYLENLSFLSFLNLSYNHFEG 560 (566)
Q Consensus 518 l~~l~~L~~L~l~~n~~~~----~~~~~l~~~~~L~~L~l~~~~l~~ 560 (566)
+..-+.+.+|++++|.... .+|..++.-.+++.+..+.|....
T Consensus 436 l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~~ 482 (553)
T KOG4242|consen 436 LLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPED 482 (553)
T ss_pred hccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCccc
Confidence 3445789999999998764 445555555568888777776543
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=76.71 E-value=1.5 Score=24.49 Aligned_cols=14 Identities=36% Similarity=0.337 Sum_probs=8.6
Q ss_pred CCCCeeeCCCCcCc
Q 040451 546 SFLSFLNLSYNHFE 559 (566)
Q Consensus 546 ~~L~~L~l~~~~l~ 559 (566)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666664
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=76.57 E-value=16 Score=36.41 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=36.9
Q ss_pred CCEEecCCccccccch---hhccCCCCCCEEEccCCcccc----cCCccccCCCCCCeEecccCcc
Q 040451 355 LNALGVESNQLAGTIP---LAIGELKSLQMLFLNENFLRG----TIPSSLGNLTLLTQLILEVNNL 413 (566)
Q Consensus 355 L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~l 413 (566)
+..+.++.+....... .....-+.+.+|+++||.+.+ .+|...+...+++.+..+.|-.
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 5667777776553322 234456788899999988764 2445555556677776666644
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=75.20 E-value=2 Score=23.44 Aligned_cols=16 Identities=38% Similarity=0.505 Sum_probs=8.1
Q ss_pred CCCeeeCCCCcCcccCC
Q 040451 547 FLSFLNLSYNHFEGKVP 563 (566)
Q Consensus 547 ~L~~L~l~~~~l~~~~p 563 (566)
+|+.|++++|++. ++|
T Consensus 3 ~L~~L~vs~N~Lt-~LP 18 (26)
T smart00364 3 SLKELNVSNNQLT-SLP 18 (26)
T ss_pred ccceeecCCCccc-cCc
Confidence 4555555555544 444
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=72.25 E-value=3.4 Score=22.64 Aligned_cols=14 Identities=43% Similarity=0.743 Sum_probs=10.3
Q ss_pred CCCCEEeCCCCccc
Q 040451 522 KSITELDLSRNNLS 535 (566)
Q Consensus 522 ~~L~~L~l~~n~~~ 535 (566)
.+|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 56777777777776
No 89
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=61.51 E-value=5.7 Score=21.55 Aligned_cols=13 Identities=31% Similarity=0.054 Sum_probs=10.3
Q ss_pred CCCCCeeeCCCCc
Q 040451 545 LSFLSFLNLSYNH 557 (566)
Q Consensus 545 ~~~L~~L~l~~~~ 557 (566)
+++|++|+|++|+
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4678888888886
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=61.31 E-value=2.9 Score=42.17 Aligned_cols=65 Identities=25% Similarity=0.228 Sum_probs=36.0
Q ss_pred CCCCCCEEEccCCccccc--CCcCCcCCCCCcEEeCCCCcccccCCcCCCC--CCCCCEEeCCCCcccc
Q 040451 472 NLKNLVSLDISSNMFSGE--IPTTLGGCTSLEYLGMQDNSFTRSIPSTLSS--LKSITELDLSRNNLSG 536 (566)
Q Consensus 472 ~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~--l~~L~~L~l~~n~~~~ 536 (566)
+.+.+..+.+++|++... +...-...|.|+.|+|++|...-.....+.. ...|++|.+.||++.+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 445666777777776522 1112234477778888777222112122222 2567788888888754
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=36.29 E-value=16 Score=37.11 Aligned_cols=81 Identities=22% Similarity=0.275 Sum_probs=50.7
Q ss_pred ccCCCCCCEEeCCCccCCCC--CCcccccCCCCCEEEccCC--cccccCCccccCC--CCCCEEecccCcCCCCC--chh
Q 040451 78 VSNLFRLQNLTLTNNYFSGK--ILTDLSHCSNVMKFEASNN--KLEAEIPVEIGNL--LMLQILNIAENHLKGQL--PAS 149 (566)
Q Consensus 78 ~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~~--~~~~~~~~~~~~l--~~L~~L~l~~~~i~~~~--~~~ 149 (566)
-.+.+.+..++|++|++-.. ....-...|+|..|+|++| .+.. ..++.+. ..|++|-+.+|.+.... +.+
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~tf~~~s~ 291 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTTFSDRSE 291 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccchhhhHH
Confidence 35678888999999987421 1122346689999999999 4332 2234433 35889999999886321 111
Q ss_pred ----h-cCCCCCCEEE
Q 040451 150 ----I-GNLSALQEID 160 (566)
Q Consensus 150 ----l-~~l~~L~~L~ 160 (566)
+ ..+|+|..||
T Consensus 292 yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 292 YVSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHHhcchheeec
Confidence 1 2457776665
Done!