Query 040451
Match_columns 566
No_of_seqs 261 out of 3653
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 13:39:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040451.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040451hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.7E-69 1.6E-73 582.0 45.3 558 1-565 20-723 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.3E-58 4.4E-63 500.5 41.3 513 34-557 126-738 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 4.6E-54 1.6E-58 461.2 47.2 526 34-561 25-624 (680)
4 3t6q_A CD180 antigen; protein- 100.0 7.2E-54 2.5E-58 453.7 41.1 515 34-562 33-563 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 7.1E-53 2.4E-57 452.0 45.6 499 34-537 49-624 (680)
6 3t6q_A CD180 antigen; protein- 100.0 6.1E-53 2.1E-57 446.6 39.5 490 34-536 57-561 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1.2E-52 4.2E-57 444.2 40.2 512 34-563 32-562 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 5.9E-50 2E-54 423.7 38.2 504 38-564 15-538 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 1.6E-49 5.6E-54 433.7 36.6 518 21-561 13-562 (844)
10 2z63_A TOLL-like receptor 4, v 100.0 2.6E-48 8.8E-53 408.5 39.1 492 34-564 28-536 (570)
11 3j0a_A TOLL-like receptor 5; m 100.0 1.4E-47 4.9E-52 418.4 40.4 504 37-564 7-544 (844)
12 4ecn_A Leucine-rich repeat pro 100.0 1.1E-48 3.7E-53 419.2 30.3 484 1-556 277-861 (876)
13 4eco_A Uncharacterized protein 100.0 4E-49 1.4E-53 416.6 26.6 463 9-536 54-601 (636)
14 2z81_A CD282 antigen, TOLL-lik 100.0 1.5E-47 5E-52 400.6 34.0 467 35-537 27-512 (549)
15 2z81_A CD282 antigen, TOLL-lik 100.0 9.3E-45 3.2E-49 379.4 36.0 444 34-515 50-514 (549)
16 2z63_A TOLL-like receptor 4, v 100.0 1.3E-43 4.5E-48 372.6 37.7 465 34-539 52-535 (570)
17 4g8a_A TOLL-like receptor 4; l 100.0 2E-43 6.8E-48 376.5 39.2 537 7-559 8-580 (635)
18 2z7x_B TOLL-like receptor 1, v 100.0 5.5E-44 1.9E-48 370.7 28.4 458 37-535 3-481 (520)
19 2z7x_B TOLL-like receptor 1, v 100.0 7E-44 2.4E-48 369.9 28.8 460 61-561 3-483 (520)
20 4eco_A Uncharacterized protein 100.0 1.3E-44 4.3E-49 382.2 17.5 436 58-560 81-601 (636)
21 4ecn_A Leucine-rich repeat pro 100.0 2.8E-41 9.4E-46 362.0 28.6 434 58-560 323-841 (876)
22 4g8a_A TOLL-like receptor 4; l 100.0 6.4E-40 2.2E-44 349.4 38.4 509 39-564 36-560 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.1E-41 2.1E-45 350.6 29.1 461 37-561 34-512 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-40 5.1E-45 347.6 29.3 436 34-536 52-511 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 4.3E-37 1.5E-41 313.5 30.7 380 133-563 13-412 (455)
26 1jl5_A Outer protein YOPM; leu 100.0 3.5E-38 1.2E-42 318.4 21.7 396 57-564 10-434 (454)
27 3v47_A TOLL-like receptor 5B a 100.0 2.1E-37 7.2E-42 315.9 27.3 364 34-442 30-412 (455)
28 1ogq_A PGIP-2, polygalacturona 100.0 2.5E-37 8.6E-42 297.6 17.3 280 1-285 14-302 (313)
29 1jl5_A Outer protein YOPM; leu 100.0 1.2E-36 4E-41 307.3 22.6 390 80-564 9-416 (454)
30 1o6v_A Internalin A; bacterial 100.0 5.3E-34 1.8E-38 290.8 35.2 345 57-512 45-389 (466)
31 1o6v_A Internalin A; bacterial 100.0 1.9E-33 6.5E-38 286.7 34.3 370 103-560 43-419 (466)
32 3bz5_A Internalin-J, INLJ; leu 100.0 3.2E-34 1.1E-38 289.8 28.0 193 74-288 34-226 (457)
33 2id5_A Lingo-1, leucine rich r 100.0 7.9E-34 2.7E-38 290.9 28.3 320 204-559 14-333 (477)
34 3bz5_A Internalin-J, INLJ; leu 100.0 1.1E-33 3.8E-38 285.8 28.2 364 47-494 31-394 (457)
35 3o6n_A APL1; leucine-rich repe 100.0 2.9E-33 9.8E-38 278.9 25.8 348 12-439 3-353 (390)
36 2id5_A Lingo-1, leucine rich r 100.0 6.6E-33 2.3E-37 284.1 26.6 318 38-390 15-333 (477)
37 4fmz_A Internalin; leucine ric 100.0 1.8E-31 6.3E-36 261.7 30.2 307 54-414 40-346 (347)
38 3oja_B Anopheles plasmodium-re 100.0 4.2E-32 1.4E-36 285.1 27.2 353 8-438 5-358 (597)
39 3o6n_A APL1; leucine-rich repe 100.0 3E-31 1E-35 264.3 26.8 308 34-390 45-352 (390)
40 4fmz_A Internalin; leucine ric 100.0 5.4E-31 1.8E-35 258.4 28.1 307 197-559 40-346 (347)
41 3oja_B Anopheles plasmodium-re 100.0 2.4E-30 8.2E-35 271.7 27.7 308 34-390 51-358 (597)
42 1z7x_W Ribonuclease inhibitor; 100.0 1.5E-33 5E-38 288.0 0.7 362 130-535 3-411 (461)
43 1ogq_A PGIP-2, polygalacturona 100.0 1.9E-30 6.4E-35 249.6 21.2 258 304-566 50-312 (313)
44 1z7x_W Ribonuclease inhibitor; 100.0 1.6E-33 5.6E-38 287.7 -1.0 382 34-438 3-440 (461)
45 1xku_A Decorin; proteoglycan, 100.0 9.3E-29 3.2E-33 240.4 29.0 289 202-557 32-330 (330)
46 4fcg_A Uncharacterized protein 100.0 5.6E-31 1.9E-35 254.7 12.9 256 2-286 36-313 (328)
47 2ft3_A Biglycan; proteoglycan, 100.0 2.5E-29 8.7E-34 244.5 24.4 288 202-557 34-331 (332)
48 1xku_A Decorin; proteoglycan, 100.0 1.1E-28 3.6E-33 240.0 27.3 294 36-388 33-330 (330)
49 2ft3_A Biglycan; proteoglycan, 100.0 4.6E-29 1.6E-33 242.7 24.5 293 59-388 34-331 (332)
50 3ogk_B Coronatine-insensitive 100.0 4.6E-32 1.6E-36 286.0 2.5 454 18-508 38-548 (592)
51 3ogk_B Coronatine-insensitive 100.0 5.2E-30 1.8E-34 270.3 5.7 230 302-531 291-547 (592)
52 4fcg_A Uncharacterized protein 100.0 4.6E-29 1.6E-33 241.3 11.0 284 3-317 23-314 (328)
53 2z80_A TOLL-like receptor 2, v 99.9 4E-27 1.4E-31 231.0 19.1 284 15-320 23-317 (353)
54 2p1m_B Transport inhibitor res 99.9 7.2E-30 2.5E-34 269.4 -2.0 462 18-511 31-544 (594)
55 2z66_A Variable lymphocyte rec 99.9 2.3E-26 7.9E-31 221.0 22.4 248 277-559 10-261 (306)
56 2z66_A Variable lymphocyte rec 99.9 5.4E-26 1.8E-30 218.4 20.9 226 58-286 28-260 (306)
57 3zyi_A Leucine-rich repeat-con 99.9 1.4E-25 4.8E-30 227.6 23.8 228 330-559 76-303 (452)
58 2z80_A TOLL-like receptor 2, v 99.9 2.5E-26 8.6E-31 225.3 17.3 181 55-239 28-211 (353)
59 2p1m_B Transport inhibitor res 99.9 1.9E-28 6.6E-33 258.5 2.3 401 34-438 66-519 (594)
60 3zyj_A Leucine-rich repeat-con 99.9 1.7E-25 5.9E-30 226.1 23.8 228 330-559 65-292 (440)
61 3zyi_A Leucine-rich repeat-con 99.9 4.2E-25 1.4E-29 224.1 25.8 246 60-317 56-303 (452)
62 3zyj_A Leucine-rich repeat-con 99.9 4.5E-25 1.5E-29 223.0 23.9 227 58-316 64-291 (440)
63 1ozn_A Reticulon 4 receptor; N 99.9 3.5E-25 1.2E-29 210.4 21.0 224 307-535 14-238 (285)
64 1wwl_A Monocyte differentiatio 99.9 1.3E-27 4.4E-32 230.0 3.5 264 14-287 23-309 (312)
65 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-26 3.7E-31 224.1 9.3 206 349-566 76-283 (317)
66 1ozn_A Reticulon 4 receptor; N 99.9 1.9E-25 6.5E-30 212.2 16.6 269 277-557 14-285 (285)
67 3g06_A SSPH2 (leucine-rich rep 99.9 8.5E-25 2.9E-29 227.1 22.4 220 7-263 7-234 (622)
68 1wwl_A Monocyte differentiatio 99.9 2.3E-26 7.9E-31 221.2 8.3 246 303-560 42-310 (312)
69 2o6q_A Variable lymphocyte rec 99.9 2.8E-24 9.7E-29 202.1 21.2 216 19-239 2-218 (270)
70 3o53_A Protein LRIM1, AGAP0063 99.9 2E-25 7E-30 215.1 9.4 245 127-416 31-278 (317)
71 3g06_A SSPH2 (leucine-rich rep 99.9 7.7E-23 2.6E-27 212.5 28.0 267 82-447 40-306 (622)
72 3oja_A Leucine-rich immune mol 99.9 2.3E-24 8E-29 219.6 12.5 235 305-554 35-270 (487)
73 2z62_A TOLL-like receptor 4, v 99.9 3.6E-23 1.2E-27 195.4 19.0 205 329-535 28-237 (276)
74 3oja_A Leucine-rich immune mol 99.9 3.3E-23 1.1E-27 211.1 17.5 217 328-559 33-250 (487)
75 2z62_A TOLL-like receptor 4, v 99.9 1.9E-22 6.3E-27 190.6 20.1 205 58-264 28-238 (276)
76 2o6q_A Variable lymphocyte rec 99.9 3.8E-22 1.3E-26 187.5 21.8 202 330-535 17-218 (270)
77 3rfs_A Internalin B, repeat mo 99.9 1.5E-22 5.1E-27 190.4 16.9 204 349-564 37-240 (272)
78 1p9a_G Platelet glycoprotein I 99.9 5.6E-22 1.9E-26 187.9 20.4 200 351-558 8-207 (290)
79 2ast_B S-phase kinase-associat 99.9 2.6E-24 8.9E-29 209.8 4.3 237 17-260 32-282 (336)
80 1p9a_G Platelet glycoprotein I 99.9 2E-21 6.8E-26 184.1 19.7 179 54-239 6-185 (290)
81 3m19_A Variable lymphocyte rec 99.9 1.3E-21 4.5E-26 181.7 16.7 189 20-214 3-192 (251)
82 4glp_A Monocyte differentiatio 99.9 5.8E-22 2E-26 190.3 14.1 227 304-560 64-308 (310)
83 2ast_B S-phase kinase-associat 99.9 1.7E-22 5.9E-27 196.8 10.1 230 330-564 71-311 (336)
84 3goz_A Leucine-rich repeat-con 99.9 4.6E-23 1.6E-27 202.5 5.3 252 279-536 3-298 (362)
85 2ca6_A RAN GTPase-activating p 99.9 3.7E-23 1.3E-27 205.4 4.1 254 268-561 26-318 (386)
86 3goz_A Leucine-rich repeat-con 99.9 1.1E-22 3.7E-27 199.9 6.0 154 39-192 3-181 (362)
87 3rfs_A Internalin B, repeat mo 99.9 1.2E-20 4.1E-25 177.4 19.5 203 354-563 20-222 (272)
88 2xwt_C Thyrotropin receptor; s 99.9 4.2E-21 1.4E-25 177.0 15.5 197 354-557 32-237 (239)
89 4glp_A Monocyte differentiatio 99.9 3.7E-21 1.3E-25 184.7 14.4 224 58-287 64-307 (310)
90 3m19_A Variable lymphocyte rec 99.9 1.8E-20 6.3E-25 174.0 18.6 180 353-536 14-193 (251)
91 2xwt_C Thyrotropin receptor; s 99.8 1.3E-20 4.6E-25 173.6 15.9 151 59-211 32-189 (239)
92 2ca6_A RAN GTPase-activating p 99.8 2.2E-22 7.5E-27 199.8 3.7 193 127-321 91-320 (386)
93 1h6u_A Internalin H; cell adhe 99.8 2.1E-20 7.2E-25 178.9 16.8 194 54-263 37-230 (308)
94 1h6u_A Internalin H; cell adhe 99.8 2E-20 6.7E-25 179.1 15.5 191 329-536 41-231 (308)
95 3cvr_A Invasion plasmid antige 99.8 1.1E-20 3.9E-25 193.7 8.3 211 8-248 29-252 (571)
96 2o6s_A Variable lymphocyte rec 99.8 3.4E-19 1.2E-23 160.4 15.1 181 21-222 6-186 (208)
97 4ay9_X Follicle-stimulating ho 99.8 9.9E-19 3.4E-23 170.7 15.5 237 39-283 14-255 (350)
98 3e6j_A Variable lymphocyte rec 99.8 2.2E-18 7.6E-23 157.2 16.5 165 13-193 10-174 (229)
99 2o6s_A Variable lymphocyte rec 99.8 1.3E-18 4.3E-23 156.6 14.6 177 356-544 10-187 (208)
100 4ay9_X Follicle-stimulating ho 99.8 4.1E-18 1.4E-22 166.3 17.0 220 330-555 31-255 (350)
101 3cvr_A Invasion plasmid antige 99.8 4.6E-18 1.6E-22 174.4 15.6 186 330-544 60-252 (571)
102 1h6t_A Internalin B; cell adhe 99.8 6E-18 2E-22 160.3 13.7 171 55-263 43-213 (291)
103 2v9t_B SLIT homolog 2 protein 99.7 2.6E-17 8.7E-22 149.0 16.7 151 357-535 15-165 (220)
104 1h6t_A Internalin B; cell adhe 99.7 1E-17 3.4E-22 158.8 14.5 175 79-291 43-217 (291)
105 2v70_A SLIT-2, SLIT homolog 2 99.7 1.7E-17 5.9E-22 150.1 15.4 152 380-535 14-166 (220)
106 2v9t_B SLIT homolog 2 protein 99.7 4.5E-17 1.5E-21 147.4 16.5 153 38-193 15-167 (220)
107 4ezg_A Putative uncharacterize 99.7 9.5E-18 3.3E-22 149.3 11.8 152 55-213 41-193 (197)
108 2xot_A Amphoterin-induced prot 99.7 1.7E-17 5.8E-22 162.6 14.0 176 356-559 21-202 (361)
109 1m9s_A Internalin B; cell inva 99.7 2.4E-17 8.2E-22 171.1 15.3 175 349-538 39-213 (605)
110 2v70_A SLIT-2, SLIT homolog 2 99.7 7.2E-17 2.5E-21 146.1 16.0 154 38-194 15-169 (220)
111 1m9s_A Internalin B; cell inva 99.7 3.4E-17 1.1E-21 170.0 15.2 173 54-240 39-211 (605)
112 4ezg_A Putative uncharacterize 99.7 2.7E-17 9.1E-22 146.4 12.2 151 34-192 44-195 (197)
113 2xot_A Amphoterin-induced prot 99.7 7.3E-17 2.5E-21 158.1 15.2 174 38-214 22-202 (361)
114 3e6j_A Variable lymphocyte rec 99.7 1.5E-16 5.2E-21 144.9 15.4 155 377-536 19-173 (229)
115 1xeu_A Internalin C; cellular 99.7 2.4E-17 8.2E-22 153.6 7.4 165 331-535 21-185 (263)
116 1dce_A Protein (RAB geranylger 99.7 6.2E-19 2.1E-23 181.9 -6.3 122 155-281 442-567 (567)
117 3sb4_A Hypothetical leucine ri 99.7 2.1E-16 7.3E-21 152.8 11.7 103 352-481 225-328 (329)
118 3sb4_A Hypothetical leucine ri 99.7 5.9E-16 2E-20 149.7 14.7 265 272-553 23-328 (329)
119 1xeu_A Internalin C; cellular 99.7 2.8E-16 9.7E-21 146.3 11.9 167 59-240 20-186 (263)
120 4b8c_D Glucose-repressible alc 99.7 4.2E-17 1.4E-21 173.7 6.9 205 17-236 158-369 (727)
121 1w8a_A SLIT protein; signaling 99.6 1.1E-15 3.7E-20 135.1 13.2 109 453-561 32-141 (192)
122 2ell_A Acidic leucine-rich nuc 99.6 5.8E-16 2E-20 133.9 10.3 107 58-167 24-133 (168)
123 2je0_A Acidic leucine-rich nuc 99.6 8.6E-16 2.9E-20 129.9 9.7 127 58-186 17-148 (149)
124 4fs7_A Uncharacterized protein 99.6 5.4E-14 1.8E-18 139.5 23.9 330 50-430 63-393 (394)
125 2ell_A Acidic leucine-rich nuc 99.6 4.1E-15 1.4E-19 128.6 12.3 133 80-214 22-160 (168)
126 1dce_A Protein (RAB geranylger 99.6 2.4E-17 8.4E-22 170.1 -2.2 195 351-552 347-566 (567)
127 1w8a_A SLIT protein; signaling 99.6 6.6E-15 2.3E-19 130.1 13.7 127 38-167 12-139 (192)
128 4fdw_A Leucine rich hypothetic 99.6 1.1E-13 3.9E-18 136.3 23.8 254 241-557 127-381 (401)
129 2je0_A Acidic leucine-rich nuc 99.6 2E-15 6.8E-20 127.7 8.7 128 34-163 17-149 (149)
130 2o6r_A Variable lymphocyte rec 99.6 1.3E-14 4.3E-19 126.6 13.2 131 428-562 10-140 (177)
131 2wfh_A SLIT homolog 2 protein 99.6 1.7E-14 5.8E-19 127.3 13.9 106 453-559 34-139 (193)
132 4fs7_A Uncharacterized protein 99.6 2.5E-13 8.5E-18 134.7 23.4 331 169-551 62-393 (394)
133 2wfh_A SLIT homolog 2 protein 99.6 3.4E-14 1.2E-18 125.4 14.3 125 38-166 14-138 (193)
134 4b8c_D Glucose-repressible alc 99.6 7.2E-16 2.5E-20 164.2 2.4 192 58-260 173-369 (727)
135 1a9n_A U2A', U2A'; complex (nu 99.5 1.9E-14 6.5E-19 125.3 10.0 132 54-191 15-153 (176)
136 4fdw_A Leucine rich hypothetic 99.5 7E-13 2.4E-17 130.7 22.3 241 57-317 112-358 (401)
137 2o6r_A Variable lymphocyte rec 99.5 1.3E-13 4.6E-18 120.1 14.9 110 58-167 28-137 (177)
138 1a9n_A U2A', U2A'; complex (nu 99.5 1.1E-13 3.8E-18 120.4 10.9 133 77-214 14-153 (176)
139 1ds9_A Outer arm dynein; leuci 99.4 1.2E-15 4.2E-20 135.7 -5.9 109 77-190 43-152 (198)
140 3g39_A Variable lymphocyte rec 99.4 1.1E-12 3.8E-17 113.1 11.8 105 427-535 11-115 (170)
141 1ds9_A Outer arm dynein; leuci 99.4 4.4E-15 1.5E-19 132.1 -3.9 134 78-216 14-155 (198)
142 4gt6_A Cell surface protein; l 99.4 5E-11 1.7E-15 118.1 24.7 85 122-208 55-144 (394)
143 2r9u_A Variable lymphocyte rec 99.4 1.8E-12 6E-17 112.2 11.9 104 428-535 15-118 (174)
144 4gt6_A Cell surface protein; l 99.4 5.6E-11 1.9E-15 117.7 23.2 318 195-559 57-391 (394)
145 3g39_A Variable lymphocyte rec 99.4 6.5E-12 2.2E-16 108.2 12.4 104 61-167 12-115 (170)
146 2r9u_A Variable lymphocyte rec 99.3 9.2E-12 3.1E-16 107.6 12.4 104 61-167 15-118 (174)
147 3un9_A NLR family member X1; l 99.3 6.2E-14 2.1E-18 136.9 -2.5 185 376-560 71-284 (372)
148 3un9_A NLR family member X1; l 99.3 5.7E-14 1.9E-18 137.2 -6.3 184 352-536 71-284 (372)
149 4h09_A Hypothetical leucine ri 99.2 1.6E-08 5.6E-13 99.4 27.1 164 352-546 193-356 (379)
150 2ifg_A High affinity nerve gro 99.1 2.1E-10 7.3E-15 111.5 10.3 102 430-535 13-116 (347)
151 4h09_A Hypothetical leucine ri 99.1 2E-08 6.8E-13 98.8 24.2 61 348-409 281-341 (379)
152 2ifg_A High affinity nerve gro 99.0 7.6E-10 2.6E-14 107.6 10.8 101 40-143 14-116 (347)
153 2ra8_A Uncharacterized protein 99.0 3.1E-10 1.1E-14 109.7 5.0 187 348-557 134-341 (362)
154 2ra8_A Uncharacterized protein 98.9 1.6E-09 5.3E-14 104.7 5.7 83 177-261 251-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.6 5.6E-09 1.9E-13 91.0 0.9 117 50-166 28-163 (185)
156 3e4g_A ATP synthase subunit S, 98.5 9.3E-09 3.2E-13 86.9 -1.2 81 453-533 64-150 (176)
157 3rw6_A Nuclear RNA export fact 98.4 1.3E-08 4.5E-13 92.9 -1.6 81 103-185 167-258 (267)
158 3e4g_A ATP synthase subunit S, 98.4 1.1E-07 3.9E-12 80.3 2.8 82 83-164 62-149 (176)
159 1io0_A Tropomodulin; LRR prote 98.4 1.9E-07 6.6E-12 81.1 4.2 14 424-437 150-163 (185)
160 3rw6_A Nuclear RNA export fact 98.2 1.1E-06 3.8E-11 80.2 4.1 81 471-552 167-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00017 6E-09 62.0 4.4 38 349-386 94-135 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00013 4.4E-09 62.8 3.2 115 51-165 34-168 (197)
163 3rfe_A Platelet glycoprotein I 97.2 0.00072 2.5E-08 54.3 6.6 57 477-535 11-68 (130)
164 3rfe_A Platelet glycoprotein I 96.8 0.0023 7.8E-08 51.3 6.3 57 453-511 11-68 (130)
165 2lz0_A Uncharacterized protein 77.1 5.9 0.0002 29.4 6.0 46 462-508 8-53 (100)
166 2lz0_A Uncharacterized protein 62.1 9.5 0.00033 28.2 4.3 48 484-532 6-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.7e-69 Score=581.97 Aligned_cols=558 Identities=31% Similarity=0.472 Sum_probs=404.2
Q ss_pred CccCCCCCCCCCCCCCCCCCCCCcccCccCCCCCcEEEEEcCCCCCccc---Cc-----------------------ccC
Q 040451 1 MKSQLQDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGV---LS-----------------------PFV 54 (566)
Q Consensus 1 ~~~~~~~~~~~~~~w~~~~~~c~w~~~~~~~~~~~v~~l~l~~~~~~~~---~~-----------------------~~l 54 (566)
||+++.||. ++.+|+.+++||+|.||+|. .++|+.|+|+++.+.+. ++ ..+
T Consensus 20 ~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~ 96 (768)
T 3rgz_A 20 FKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGF 96 (768)
T ss_dssp HHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCC
T ss_pred HHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhh
Confidence 688899998 99999999999999999998 38999999999988876 33 467
Q ss_pred cCCCCCcEEEcCCCCCccccCc--cccCCCCCCEEeCCCccCCCCCCccc-ccCCCCCEEEccCCcccccCCcc---ccC
Q 040451 55 GNLSFPRSINLPNKSFRGEIPH--EVSNLFRLQNLTLTNNYFSGKILTDL-SHCSNVMKFEASNNKLEAEIPVE---IGN 128 (566)
Q Consensus 55 ~~l~~L~~L~L~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~---~~~ 128 (566)
+++++|++|+|++|.+.+.+|. .++++++|++|++++|.+++..+..+ .++++|++|++++|.+.+..+.. +.+
T Consensus 97 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 176 (768)
T 3rgz_A 97 KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG 176 (768)
T ss_dssp CCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTC
T ss_pred ccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhcc
Confidence 8888888999988888887887 78888888888888888876666554 67777777777777776555444 445
Q ss_pred CCCCCEEecccCcCC----------------------CCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeecc
Q 040451 129 LLMLQILNIAENHLK----------------------GQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVA 186 (566)
Q Consensus 129 l~~L~~L~l~~~~i~----------------------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 186 (566)
+++|++|++++|.++ +..|. +.++++|++|++++|.+++..|..+.++++|++|+++
T Consensus 177 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 255 (768)
T 3rgz_A 177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255 (768)
T ss_dssp CTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECC
T ss_pred CCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECC
Confidence 555555555544444 33332 4444444444444444444444444444445555554
Q ss_pred ccccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccc
Q 040451 187 RNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKV 266 (566)
Q Consensus 187 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 266 (566)
+|.+.+..+.. .+++|++|++++|.+.+.+|..++..+++|++|++++|.++...|..+..+++|++|++++|.+.+..
T Consensus 256 ~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i 334 (768)
T 3rgz_A 256 SNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334 (768)
T ss_dssp SSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred CCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcC
Confidence 44444332222 44555555555555555666655544577777777777777667777777777777777777776555
Q ss_pred ccc-ccCCCCCCEEECCCCcCCCCCCCChhhh-------------------hhhcC--CCCCCEEEcccCccccccchhH
Q 040451 267 SIN-FSRLQNLSRLNLGENNLGTGTANDLDFI-------------------TLLTN--CTKLEVLDLHSNRFGGVLPFSL 324 (566)
Q Consensus 267 ~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~-------------------~~l~~--~~~L~~L~l~~~~~~~~~~~~~ 324 (566)
+.. +..+++|+.|++++|.+.+..+..+... ..+.. +++|++|++++|.+++..|..+
T Consensus 335 p~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l 414 (768)
T 3rgz_A 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414 (768)
T ss_dssp CHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG
T ss_pred CHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH
Confidence 543 6677777777777776654333222100 01111 4556666666666666666665
Q ss_pred hhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCC
Q 040451 325 ANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLT 404 (566)
Q Consensus 325 ~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 404 (566)
... ++++.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++++..|..+..+++|+
T Consensus 415 ~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 493 (768)
T 3rgz_A 415 SNC-SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493 (768)
T ss_dssp GGC-TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred hcC-CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCC
Confidence 554 4677777777777777777777777777777777777767777777777777777777777777777777777888
Q ss_pred eEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCc----------------
Q 040451 405 QLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPA---------------- 468 (566)
Q Consensus 405 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~---------------- 468 (566)
+|++++|++++.+|..+..+++|+.|++++|++.+.+|..+..+..+ +.|++++|.+.+.+|.
T Consensus 494 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~ 572 (768)
T 3rgz_A 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL-IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTC-CEEECCSSEEESBCCGGGGTTTTCBCCSTTCS
T ss_pred EEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCC-CEEECCCCccCCcCChHHhcccchhhhhcccc
Confidence 88888887777777777777888888888888777777777776665 7788887777655443
Q ss_pred ------------------------------------------------------cccCCCCCCEEEccCCcccccCCcCC
Q 040451 469 ------------------------------------------------------EVGNLKNLVSLDISSNMFSGEIPTTL 494 (566)
Q Consensus 469 ------------------------------------------------------~l~~~~~L~~L~l~~~~~~~~~~~~~ 494 (566)
.+..+++|+.||+++|.+++.+|..+
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l 652 (768)
T 3rgz_A 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652 (768)
T ss_dssp CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG
T ss_pred ccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHH
Confidence 23445788999999999998999999
Q ss_pred cCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCcccCCCC
Q 040451 495 GGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE 565 (566)
Q Consensus 495 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p~~ 565 (566)
+.++.|+.|+|++|.+++.+|..++.+++|+.||+++|++++.+|+.+..+++|++|++++|+++|.+|..
T Consensus 653 ~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999964
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.3e-58 Score=500.48 Aligned_cols=513 Identities=29% Similarity=0.483 Sum_probs=393.7
Q ss_pred CcEEEEEcCCCCCcccCcccC-cCCCCCcEEEcCCCCCccccCcc---ccCCCCCCEEeCCCccCCCCCCcccccCCCCC
Q 040451 34 QRVTGLDLRQQSVGGVLSPFV-GNLSFPRSINLPNKSFRGEIPHE---VSNLFRLQNLTLTNNYFSGKILTDLSHCSNVM 109 (566)
Q Consensus 34 ~~v~~l~l~~~~~~~~~~~~l-~~l~~L~~L~L~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 109 (566)
.++++|++++|.+.+..|..+ .++++|++|+|++|.+.+..+.. +.++++|++|++++|.+++..+ +..+++|+
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~ 203 (768)
T 3rgz_A 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLE 203 (768)
T ss_dssp TTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCC
T ss_pred CCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCC
Confidence 567778888777776666554 67777777777777776555544 4555555555555555543222 24455555
Q ss_pred EEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCC----------------------CEEEeeCCccc
Q 040451 110 KFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSAL----------------------QEIDVRGNRLG 167 (566)
Q Consensus 110 ~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L----------------------~~L~l~~~~~~ 167 (566)
+|++++|.+.+.+|. ++++++|++|++++|.+++..|..+..+++| ++|++++|.++
T Consensus 204 ~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~ 282 (768)
T 3rgz_A 204 FLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFT 282 (768)
T ss_dssp EEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEE
T ss_pred EEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccC
Confidence 555555555443333 4555555555555555544444444444444 45555555444
Q ss_pred ccCccccccc-Cccceeeccccccccch-hhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccc
Q 040451 168 GRIPSTISHV-RNLISFNVARNQFSGMI-PLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDS 245 (566)
Q Consensus 168 ~~~~~~l~~l-~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 245 (566)
+.+|..+... ++|+.|++++|.+.+.. ..+..+++|++|++++|.+.+.+|...+..+++|++|++++|.+....|..
T Consensus 283 ~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 362 (768)
T 3rgz_A 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362 (768)
T ss_dssp ESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT
T ss_pred CccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH
Confidence 4555555443 66666666666665433 556667777777777777666666553446677777777777766666666
Q ss_pred cccCC-CCceEecccccccccccccccC--CCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccch
Q 040451 246 LSNAT-NLQGLEINGNLFSGKVSINFSR--LQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPF 322 (566)
Q Consensus 246 l~~l~-~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 322 (566)
+..++ +|+.|++++|.+.+..+..+.. +++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..|.
T Consensus 363 l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p------~~l~~l~~L~~L~Ls~N~l~~~~p~ 436 (768)
T 3rgz_A 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP------PTLSNCSELVSLHLSFNYLSGTIPS 436 (768)
T ss_dssp HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC------GGGGGCTTCCEEECCSSEEESCCCG
T ss_pred HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC------HHHhcCCCCCEEECcCCcccCcccH
Confidence 66665 6777777777776666655554 6778888888887765544 5678899999999999999988888
Q ss_pred hHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCC
Q 040451 323 SLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTL 402 (566)
Q Consensus 323 ~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 402 (566)
.+... ++++.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+..+++|++|++++|++++.+|..++.+++
T Consensus 437 ~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 515 (768)
T 3rgz_A 437 SLGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515 (768)
T ss_dssp GGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred HHhcC-CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCC
Confidence 88876 59999999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred CCeEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhhcc----------------------------------
Q 040451 403 LTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHI---------------------------------- 448 (566)
Q Consensus 403 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~---------------------------------- 448 (566)
|++|++++|++++.+|..+..+++|+.|++++|.+.+.+|..++..
T Consensus 516 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (768)
T 3rgz_A 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595 (768)
T ss_dssp CCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEE
T ss_pred CCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999998888766442
Q ss_pred -----------------------------------CCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcC
Q 040451 449 -----------------------------------ITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTT 493 (566)
Q Consensus 449 -----------------------------------~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 493 (566)
...++.|++++|.+.+.+|..++.++.|+.|++++|.+++.+|..
T Consensus 596 ~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~ 675 (768)
T 3rgz_A 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675 (768)
T ss_dssp CTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred cccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChH
Confidence 123478999999999999999999999999999999999999999
Q ss_pred CcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCc
Q 040451 494 LGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNH 557 (566)
Q Consensus 494 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~ 557 (566)
++.+++|+.|+|++|++++.+|..+..+++|+.|++++|++++.+|+. ..+.++....+.||+
T Consensus 676 l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~ 738 (768)
T 3rgz_A 676 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNP 738 (768)
T ss_dssp GGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCT
T ss_pred HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCc
Confidence 999999999999999999999999999999999999999999999976 456677778888885
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.6e-54 Score=461.19 Aligned_cols=526 Identities=19% Similarity=0.192 Sum_probs=349.5
Q ss_pred CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEc
Q 040451 34 QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEA 113 (566)
Q Consensus 34 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 113 (566)
.++++|++++|.+.+..+..++++++|++|+|++|.+.+..|.+++++++|++|++++|.++...+..|..+++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 68999999999999877788999999999999999999778888999999999999999998555557999999999999
Q ss_pred cCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCccccc--ccCccceeeccccccc
Q 040451 114 SNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTIS--HVRNLISFNVARNQFS 191 (566)
Q Consensus 114 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~ 191 (566)
++|.+.+..+..|+++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+. .+++|+.|++++|.+.
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 99999866667899999999999999999877788888999999999999988866655544 4578899999888776
Q ss_pred cch-hhhhCC---------------------------CCCcEEEcccCcCcccCCccccCCC--CCccEEEccCCccccc
Q 040451 192 GMI-PLIYNI---------------------------SSLQYIFIHTNRFHGSLPLDNGVNL--PNLRYFSISGNNLTGS 241 (566)
Q Consensus 192 ~~~-~~l~~~---------------------------~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~ 241 (566)
+.. ..+..+ ++|+.|++++|.+.+..+..+. .+ ++|++|++++|.+...
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~-~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL-GLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG-GGGGSCCCEEECTTSCCCEE
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh-ccCcCCCCEEECCCCCcCcc
Confidence 554 222222 4566666666666644444333 33 3477777777777766
Q ss_pred cccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCC-CChh--hhhhhcCCCCCCEEEcccCcccc
Q 040451 242 LQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTA-NDLD--FITLLTNCTKLEVLDLHSNRFGG 318 (566)
Q Consensus 242 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~--~~~~l~~~~~L~~L~l~~~~~~~ 318 (566)
.+..+..+++|++|++++|.+.+..+..+..+++|+.|+++++....... ..+. ....+..+++|++|++++|.+.+
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 66667777777777777777766666666666666666665543221000 0000 00123445555555555555544
Q ss_pred ccchhHhhcc---------------------------ccccEEEccccCccCccchhhhccCCCCEEecCCccccccch-
Q 040451 319 VLPFSLANLS---------------------------ITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIP- 370 (566)
Q Consensus 319 ~~~~~~~~~~---------------------------~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~- 370 (566)
..+..+...+ ..++.+++++|.+.+..+..+..+++|+.|++++|.+.+..+
T Consensus 344 ~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 423 (680)
T 1ziw_A 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS
T ss_pred CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc
Confidence 4333333321 245555555565555555566666666666666666654333
Q ss_pred hhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcce--ecCCccccCCCCCcEEEccCCcccccCchhhhcc
Q 040451 371 LAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQ--GKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHI 448 (566)
Q Consensus 371 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~--~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 448 (566)
..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+. +..|..+..+++|+.|++++|.+.+..+..+..+
T Consensus 424 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l 503 (680)
T 1ziw_A 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503 (680)
T ss_dssp GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccc
Confidence 45556666666666666665555556666666666666666654 3455666666777777777776663333333333
Q ss_pred CCcCcEEEccCCcceecCC--------ccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCC
Q 040451 449 ITLPVLLDLSDNLLNGHFP--------AEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSS 520 (566)
Q Consensus 449 ~~~l~~L~l~~~~~~~~~~--------~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 520 (566)
..+ +.|++++|.+.+..+ ..+..+++|+.|++++|.++...+..|.++++|++|++++|+++...+..|..
T Consensus 504 ~~L-~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~ 582 (680)
T 1ziw_A 504 EKL-EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 582 (680)
T ss_dssp TTC-CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccc-CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCC
Confidence 333 667777776654321 12566667777777777776333345667777777777777777555555666
Q ss_pred CCCCCEEeCCCCcccccCCccCc-CCCCCCeeeCCCCcCccc
Q 040451 521 LKSITELDLSRNNLSGHIPQYLE-NLSFLSFLNLSYNHFEGK 561 (566)
Q Consensus 521 l~~L~~L~l~~n~~~~~~~~~l~-~~~~L~~L~l~~~~l~~~ 561 (566)
+++|+.|++++|+++...+..+. .+++|+.|++++|++...
T Consensus 583 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 583 QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp CTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred CCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence 77777777777777655555554 566777777777765543
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.2e-54 Score=453.67 Aligned_cols=515 Identities=18% Similarity=0.154 Sum_probs=376.6
Q ss_pred CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEc
Q 040451 34 QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEA 113 (566)
Q Consensus 34 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 113 (566)
..+++|++++|.+.+..+..|+++++|++|+|++|.+.+..|++|+++++|++|++++|.++...+..+..+++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 45666666666666555666666666666666666666555666666666666666666666555666666666666666
Q ss_pred cCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccc--eeeccccccc
Q 040451 114 SNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLI--SFNVARNQFS 191 (566)
Q Consensus 114 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~ 191 (566)
++|.+++..+..++++++|++|++++|.+++.....+..+++|++|++++|.+.+..+..++.+++|+ .|++++|.+.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 66666644455566666666666666666642223333466666666666666655555566666666 5666666666
Q ss_pred cchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCc--cEEEccCC---ccccccccccccCC--CCceEecccccccc
Q 040451 192 GMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNL--RYFSISGN---NLTGSLQDSLSNAT--NLQGLEINGNLFSG 264 (566)
Q Consensus 192 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~---~~~~~~~~~l~~l~--~L~~L~l~~~~~~~ 264 (566)
+..+......+|++|+++++........ .+.++ +.+.+... ......+..+..+. +|+.|++++|.+.+
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~ 268 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFK----GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHH----HTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS
T ss_pred ccChhHhhhccccccccCCchhHHHHhh----hccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCc
Confidence 5554444455666666665542111000 11222 12222111 01111222333332 68899999999887
Q ss_pred cccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCc
Q 040451 265 KVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGT 344 (566)
Q Consensus 265 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 344 (566)
..+..+..+++|+.|++++|.+...+. .+..+++|++|++++|.+.+..+..+... ++++.+++++|.+.+.
T Consensus 269 ~~~~~~~~l~~L~~L~l~~n~l~~lp~-------~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~~~~~ 340 (606)
T 3t6q_A 269 ISSNTFHCFSGLQELDLTATHLSELPS-------GLVGLSTLKKLVLSANKFENLCQISASNF-PSLTHLSIKGNTKRLE 340 (606)
T ss_dssp CCTTTTTTCTTCSEEECTTSCCSCCCS-------SCCSCTTCCEEECTTCCCSBGGGGCGGGC-TTCSEEECCSCSSCCB
T ss_pred cCHHHhccccCCCEEeccCCccCCCCh-------hhcccccCCEEECccCCcCcCchhhhhcc-CcCCEEECCCCCcccc
Confidence 777778889999999999998875433 46778899999999999887777666665 5899999999988765
Q ss_pred cch-hhhccCCCCEEecCCccccccc--hhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCc-c
Q 040451 345 IPD-VIANLVNLNALGVESNQLAGTI--PLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPP-S 420 (566)
Q Consensus 345 ~~~-~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~ 420 (566)
++. .+..+++|+.|++++|.+++.. +..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+. .
T Consensus 341 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 420 (606)
T 3t6q_A 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420 (606)
T ss_dssp CCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCT
T ss_pred cchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchh
Confidence 554 4889999999999999988665 66788999999999999999878888899999999999999999866554 4
Q ss_pred ccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceec---CCccccCCCCCCEEEccCCcccccCCcCCcCC
Q 040451 421 IGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGH---FPAEVGNLKNLVSLDISSNMFSGEIPTTLGGC 497 (566)
Q Consensus 421 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~---~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 497 (566)
+..+++|+.|++++|.+.+..+..+..++.+ +.|++++|.+.+. .+..+..+++|++|++++|.+++..|..|..+
T Consensus 421 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 499 (606)
T 3t6q_A 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPAL-QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL 499 (606)
T ss_dssp TTTCTTCCEEECTTCCCBTTCTTTTTTCTTC-CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhCcccCCEEECCCCccCCcCHHHHhCCCCC-CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccc
Confidence 8889999999999999986667766666665 9999999998752 33568899999999999999998888999999
Q ss_pred CCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCcccC
Q 040451 498 TSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKV 562 (566)
Q Consensus 498 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~ 562 (566)
++|++|++++|++++..|..+..+++| .|++++|++++..|+.+..+++|+.|++++|++..+-
T Consensus 500 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 500 KMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp TTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred cCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence 999999999999999899999999999 9999999999888888899999999999999987643
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.1e-53 Score=452.01 Aligned_cols=499 Identities=20% Similarity=0.222 Sum_probs=373.8
Q ss_pred CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEc
Q 040451 34 QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEA 113 (566)
Q Consensus 34 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 113 (566)
.++++|++++|.+.+..|..++++++|++|+|++|.+....+..|+++++|++|++++|.++...+..|.++++|++|++
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence 67899999999998888888999999999999999988333346889999999999999988666678999999999999
Q ss_pred cCCcccccCCccccCCCCCCEEecccCcCCCCCchhhc--CCCCCCEEEeeCCcccccCccccccc--------------
Q 040451 114 SNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIG--NLSALQEIDVRGNRLGGRIPSTISHV-------------- 177 (566)
Q Consensus 114 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~l~~l-------------- 177 (566)
++|.+.+..+..++++++|++|++++|.+++..+..+. .+++|++|++++|.+.+..+..+..+
T Consensus 129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~ 208 (680)
T 1ziw_A 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208 (680)
T ss_dssp CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCH
T ss_pred CCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccC
Confidence 99998877778888999999999999988865555543 45788888888888776655555443
Q ss_pred -------------Cccceeeccccccccch-hhhhCCC--CCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccc
Q 040451 178 -------------RNLISFNVARNQFSGMI-PLIYNIS--SLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGS 241 (566)
Q Consensus 178 -------------~~L~~L~l~~~~~~~~~-~~l~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 241 (566)
++|+.|++++|.+.+.. ..+..++ +|++|++++|.+.+..+..+. .+++|++|++++|.+...
T Consensus 209 ~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~ 287 (680)
T 1ziw_A 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHL 287 (680)
T ss_dssp HHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSCCBSEE
T ss_pred hhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccccc-CcccccEeeCCCCccCcc
Confidence 33444555555544433 3333333 366666666666533333332 566666666666666555
Q ss_pred cccccccCCC---------------------------------CceEecccccccccccccccCCCCCCEEECCCCcCCC
Q 040451 242 LQDSLSNATN---------------------------------LQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGT 288 (566)
Q Consensus 242 ~~~~l~~l~~---------------------------------L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 288 (566)
.+..+.++++ |++|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus 288 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~ 367 (680)
T 1ziw_A 288 FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCC
T ss_pred ChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhh
Confidence 4444444444 4555555555444444445555555555555544321
Q ss_pred CCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccc-hhhhccCCCCEEecCCccccc
Q 040451 289 GTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIP-DVIANLVNLNALGVESNQLAG 367 (566)
Q Consensus 289 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~ 367 (566)
.......+ . -...++|+.|++++|.+.+..+..+... ++++.|++++|.+.+.++ ..+.++++|+.|++++|.+.+
T Consensus 368 ~~l~~~~f-~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 444 (680)
T 1ziw_A 368 RTLTNETF-V-SLAHSPLHILNLTKNKISKIESDAFSWL-GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444 (680)
T ss_dssp CEECTTTT-G-GGTTSCCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEE
T ss_pred hhcchhhh-c-ccccCcCceEECCCCCCCeEChhhhhCC-CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcce
Confidence 11100000 0 0112567777778888777767666654 699999999999987665 678999999999999999998
Q ss_pred cchhhccCCCCCCEEEccCCccc--ccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccccCch--
Q 040451 368 TIPLAIGELKSLQMLFLNENFLR--GTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPR-- 443 (566)
Q Consensus 368 ~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-- 443 (566)
..+..+..+++|++|++++|.+. +..|..+..+++|+.|++++|++++..+..+..+++|++|++++|.+.+....
T Consensus 445 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 524 (680)
T 1ziw_A 445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN 524 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTS
T ss_pred eChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhc
Confidence 88889999999999999999886 46788899999999999999999987778899999999999999998743211
Q ss_pred ------hhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcC
Q 040451 444 ------QLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPST 517 (566)
Q Consensus 444 ------~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 517 (566)
.+..+. .++.|++++|.+....+..|..+++|+.|++++|.++...+..|..+++|++|++++|++++..+..
T Consensus 525 ~~~~~~~~~~l~-~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 603 (680)
T 1ziw_A 525 PGGPIYFLKGLS-HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603 (680)
T ss_dssp TTSCCCTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHH
T ss_pred cCCcchhhcCCC-CCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhH
Confidence 133444 4599999999999665567999999999999999999666777899999999999999999876666
Q ss_pred CC-CCCCCCEEeCCCCccccc
Q 040451 518 LS-SLKSITELDLSRNNLSGH 537 (566)
Q Consensus 518 l~-~l~~L~~L~l~~n~~~~~ 537 (566)
+. .+++|+.|++++|++...
T Consensus 604 ~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 604 FGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp HHHHHTTCSEEECTTCCCCBC
T ss_pred hcccccccCEEEccCCCcccC
Confidence 76 689999999999999853
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.1e-53 Score=446.55 Aligned_cols=490 Identities=17% Similarity=0.154 Sum_probs=404.3
Q ss_pred CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEc
Q 040451 34 QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEA 113 (566)
Q Consensus 34 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 113 (566)
.++++|++++|.+.+..|..|+++++|++|+|++|.+.+..|..++++++|++|++++|.++...+..+..+++|++|++
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L 136 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136 (606)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEEC
T ss_pred ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEEC
Confidence 68999999999999888999999999999999999999788889999999999999999999766788999999999999
Q ss_pred cCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCC--EEEeeCCcccccCcccccccCccceeeccccccc
Q 040451 114 SNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQ--EIDVRGNRLGGRIPSTISHVRNLISFNVARNQFS 191 (566)
Q Consensus 114 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 191 (566)
++|.+.+.....+..+++|++|++++|.+++..+..+..+++|+ +|++++|.+.+..+..+. ...|+.|++++|.
T Consensus 137 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~-- 213 (606)
T 3t6q_A 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQ-- 213 (606)
T ss_dssp CSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCS--
T ss_pred CCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhh-hccccccccCCch--
Confidence 99999864434566699999999999999977788899999999 899999999977666654 4789999999886
Q ss_pred cchhhhhCCCCCcEEEcccCcCcc----cCCccccCCC--CCccEEEccCCccccccccccccCCCCceEeccccccccc
Q 040451 192 GMIPLIYNISSLQYIFIHTNRFHG----SLPLDNGVNL--PNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGK 265 (566)
Q Consensus 192 ~~~~~l~~~~~L~~L~l~~~~~~~----~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 265 (566)
.....+..+..+....+....+.+ .++...+..+ .+|+++++++|.++...+..+..+++|++|++++|.++ .
T Consensus 214 ~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~ 292 (606)
T 3t6q_A 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-E 292 (606)
T ss_dssp CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-C
T ss_pred hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-C
Confidence 223344444444433332222211 1222222122 26888888888888777777888888888888888887 5
Q ss_pred ccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchh-HhhccccccEEEccccCccCc
Q 040451 266 VSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFS-LANLSITMTEIANGSNQISGT 344 (566)
Q Consensus 266 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~ 344 (566)
.|..+..+++|+.|++++|.+....+ ..+..+++|++|++++|.+.+..+.. +.. .++++++++++|.+.+.
T Consensus 293 lp~~l~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-l~~L~~L~l~~n~l~~~ 365 (606)
T 3t6q_A 293 LPSGLVGLSTLKKLVLSANKFENLCQ------ISASNFPSLTHLSIKGNTKRLELGTGCLEN-LENLRELDLSHDDIETS 365 (606)
T ss_dssp CCSSCCSCTTCCEEECTTCCCSBGGG------GCGGGCTTCSEEECCSCSSCCBCCSSTTTT-CTTCCEEECCSSCCCEE
T ss_pred CChhhcccccCCEEECccCCcCcCch------hhhhccCcCCEEECCCCCcccccchhhhhc-cCcCCEEECCCCccccc
Confidence 66677888888888888888776544 45667888888888888877555443 443 36888888888888765
Q ss_pred c--chhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCc-cccCCCCCCeEecccCcceecCCccc
Q 040451 345 I--PDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPS-SLGNLTLLTQLILEVNNLQGKIPPSI 421 (566)
Q Consensus 345 ~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~~~~~~~ 421 (566)
. +..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+.+..+..+
T Consensus 366 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 445 (606)
T 3t6q_A 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445 (606)
T ss_dssp EESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT
T ss_pred cCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH
Confidence 5 67788999999999999999988888999999999999999998866554 48899999999999999998888889
Q ss_pred cCCCCCcEEEccCCcccccC---chhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCC
Q 040451 422 GNCQNLILLTTRKNKLSGTV---PRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCT 498 (566)
Q Consensus 422 ~~~~~L~~L~l~~~~l~~~~---~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 498 (566)
..+++|++|++++|.+.+.. +..+..+..+ +.|++++|.+.+..+..|..+++|++|++++|.+++..|+.+..++
T Consensus 446 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 524 (606)
T 3t6q_A 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL-EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524 (606)
T ss_dssp TTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC-CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCC
T ss_pred hCCCCCCEEECCCCCCCccccccchhhccCCCc-cEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccc
Confidence 99999999999999987532 2345555554 9999999999988889999999999999999999988899999999
Q ss_pred CCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccc
Q 040451 499 SLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSG 536 (566)
Q Consensus 499 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 536 (566)
.| +|++++|++++..|..+..+++|+.|++++|++..
T Consensus 525 ~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 525 GI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp SC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred cc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 99 99999999998888888999999999999999975
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.2e-52 Score=444.24 Aligned_cols=512 Identities=19% Similarity=0.171 Sum_probs=418.6
Q ss_pred CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEc
Q 040451 34 QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEA 113 (566)
Q Consensus 34 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 113 (566)
.++++|++++|.+.+..+..++++++|++|+|++|.+++..|.+|.++++|++|++++|.++...|..|.++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 68999999999998888888999999999999999998767888999999999999999998777888999999999999
Q ss_pred cCCcccccCCccccCCCCCCEEecccCcCCC-CCchhhcCCCCCCEEEeeCCcccccCcccccccCccc----eeecccc
Q 040451 114 SNNKLEAEIPVEIGNLLMLQILNIAENHLKG-QLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLI----SFNVARN 188 (566)
Q Consensus 114 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~----~L~l~~~ 188 (566)
++|.+.+..+..++++++|++|++++|.+++ .+|..+.++++|++|++++|.+++..+..+..+++|+ .|++++|
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 9999986666789999999999999999875 4688999999999999999999887788787777665 7999999
Q ss_pred ccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccc------cccccccCC--CCceEec-cc
Q 040451 189 QFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGS------LQDSLSNAT--NLQGLEI-NG 259 (566)
Q Consensus 189 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------~~~~l~~l~--~L~~L~l-~~ 259 (566)
.+...++......+|++|++++|.+.+.........++.++.+++....+... ....+..+. .++.+++ ..
T Consensus 192 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 271 (606)
T 3vq2_A 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271 (606)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCC
T ss_pred CcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccc
Confidence 99887766566668999999999876433333334778888877754433211 111122221 3556666 45
Q ss_pred ccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEcccc
Q 040451 260 NLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSN 339 (566)
Q Consensus 260 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 339 (566)
+.+.+..+. +..+++|+.++++++.+...+ .+..+++|++|++++|.+ +..|. + ..+.++.+++++|
T Consensus 272 ~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~--------~l~~~~~L~~L~l~~n~l-~~lp~-~--~l~~L~~L~l~~n 338 (606)
T 3vq2_A 272 NDFSDDIVK-FHCLANVSAMSLAGVSIKYLE--------DVPKHFKWQSLSIIRCQL-KQFPT-L--DLPFLKSLTLTMN 338 (606)
T ss_dssp TTCCGGGGS-CGGGTTCSEEEEESCCCCCCC--------CCCTTCCCSEEEEESCCC-SSCCC-C--CCSSCCEEEEESC
T ss_pred ccccccccc-cccCCCCCEEEecCccchhhh--------hccccccCCEEEcccccC-ccccc-C--CCCccceeeccCC
Confidence 566655555 788899999999998875543 356778999999999988 45553 3 4468999999988
Q ss_pred CccCccchhhhccCCCCEEecCCccccccc--hhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecC
Q 040451 340 QISGTIPDVIANLVNLNALGVESNQLAGTI--PLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKI 417 (566)
Q Consensus 340 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 417 (566)
...+.. .+..+++|+.|++++|.+++.. +..+..+++|++|++++|.++ .++..+..+++|++|++++|++.+..
T Consensus 339 ~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~ 415 (606)
T 3vq2_A 339 KGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVT 415 (606)
T ss_dssp SSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTT
T ss_pred cCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCcc
Confidence 655443 5678899999999999988663 678889999999999999987 46678889999999999999998776
Q ss_pred C-ccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCccee-cCCccccCCCCCCEEEccCCcccccCCcCCc
Q 040451 418 P-PSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNG-HFPAEVGNLKNLVSLDISSNMFSGEIPTTLG 495 (566)
Q Consensus 418 ~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 495 (566)
+ ..+..+++|+.|++++|.+.+..+..+..+..+ +.|++++|.+.+ ..+..+..+++|++|++++|.+++..|..+.
T Consensus 416 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 494 (606)
T 3vq2_A 416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL-NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494 (606)
T ss_dssp TTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred ChhhhhccccCCEEECcCCCCCccchhhhcCCCCC-CEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhc
Confidence 6 678899999999999999987777777777666 999999999987 4678899999999999999999988888899
Q ss_pred CCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCC-CCCeeeCCCCcCcccCC
Q 040451 496 GCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLS-FLSFLNLSYNHFEGKVP 563 (566)
Q Consensus 496 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~-~L~~L~l~~~~l~~~~p 563 (566)
.+++|++|++++|++++..|..+..+++|+.|++++|+++ .+|..+..++ +|+.|++++|++...-|
T Consensus 495 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 9999999999999999888999999999999999999998 6666688886 69999999998876443
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.9e-50 Score=423.73 Aligned_cols=504 Identities=17% Similarity=0.161 Sum_probs=418.9
Q ss_pred EEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCc
Q 040451 38 GLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNK 117 (566)
Q Consensus 38 ~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 117 (566)
+++.++++++. +|..+. +++++|+|++|.+++..+..|.++++|++|++++|.++...+..|.++++|++|++++|.
T Consensus 15 ~~~c~~~~l~~-ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 15 TYQCMDQKLSK-VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp EEECTTSCCSS-CCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred ceEccCCCccc-CCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc
Confidence 57888888874 555444 889999999999997777789999999999999999997778889999999999999999
Q ss_pred ccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccc-cCcccccccCccceeeccccccccch-h
Q 040451 118 LEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGG-RIPSTISHVRNLISFNVARNQFSGMI-P 195 (566)
Q Consensus 118 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~-~ 195 (566)
+.+..|.+|+++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+.+.. .
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence 997779999999999999999999996666889999999999999999975 56889999999999999999998765 3
Q ss_pred hhhCCCC----CcEEEcccCcCcccCCccccCCCCCccEEEccCCccc-cccccccccCCCCceEeccccccccc-----
Q 040451 196 LIYNISS----LQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLT-GSLQDSLSNATNLQGLEINGNLFSGK----- 265 (566)
Q Consensus 196 ~l~~~~~----L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~----- 265 (566)
.+..+++ +.++++++|.+. .++...+ ...+|+++++++|.+. ...+..+..++.++.+++..+.+...
T Consensus 172 ~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~-~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~ 249 (606)
T 3vq2_A 172 DLQFLRENPQVNLSLDMSLNPID-FIQDQAF-QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249 (606)
T ss_dssp TTHHHHHCTTCCCEEECTTCCCC-EECTTTT-TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred hhhhhhccccccceeeccCCCcc-eeCcccc-cCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccc
Confidence 4444444 458999999998 5555555 3448999999999876 45667788899999888865543211
Q ss_pred -ccccccCCC--CCCEEEC-CCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCc
Q 040451 266 -VSINFSRLQ--NLSRLNL-GENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQI 341 (566)
Q Consensus 266 -~~~~~~~~~--~L~~L~l-~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~ 341 (566)
....+..+. .++.+.+ ..+.+.+..+ .+..+++|+.++++++.+.... .+.. .++++++++++|.+
T Consensus 250 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~-------~~~~l~~L~~L~l~~~~~~~l~--~l~~-~~~L~~L~l~~n~l 319 (606)
T 3vq2_A 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIV-------KFHCLANVSAMSLAGVSIKYLE--DVPK-HFKWQSLSIIRCQL 319 (606)
T ss_dssp CCGGGGTTGGGSEEEEEEECCCTTCCGGGG-------SCGGGTTCSEEEEESCCCCCCC--CCCT-TCCCSEEEEESCCC
T ss_pred cChHHhhhhhhccHhheecccccccccccc-------ccccCCCCCEEEecCccchhhh--hccc-cccCCEEEcccccC
Confidence 111122222 3555666 4444443322 2678899999999999986443 3433 35899999999999
Q ss_pred cCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCccccc--CCccccCCCCCCeEecccCcceecCCc
Q 040451 342 SGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGT--IPSSLGNLTLLTQLILEVNNLQGKIPP 419 (566)
Q Consensus 342 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~l~~~~~~ 419 (566)
+.+| .+ .+++|+.|++++|...... .+..+++|++|++++|.+++. .+..+..+++|++|++++|.+.+ ++.
T Consensus 320 -~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~ 393 (606)
T 3vq2_A 320 -KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSA 393 (606)
T ss_dssp -SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECC
T ss_pred -cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chh
Confidence 5777 44 9999999999999654433 677899999999999998855 37888999999999999999984 568
Q ss_pred cccCCCCCcEEEccCCcccccCc-hhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccc-cCCcCCcCC
Q 040451 420 SIGNCQNLILLTTRKNKLSGTVP-RQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSG-EIPTTLGGC 497 (566)
Q Consensus 420 ~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~ 497 (566)
.+..+++|+.|++++|.+.+..+ ..+..+.. ++.|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+
T Consensus 394 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 472 (606)
T 3vq2_A 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK-LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT 472 (606)
T ss_dssp CCTTCTTCCEEECTTSEEESTTTTTTTTTCTT-CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred hccCCCCCCeeECCCCccCCccChhhhhcccc-CCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccC
Confidence 89999999999999999987666 34445554 4999999999999889999999999999999999986 478889999
Q ss_pred CCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCcccCCC
Q 040451 498 TSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI 564 (566)
Q Consensus 498 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p~ 564 (566)
++|++|++++|.+++..|..+..+++|+.|++++|++++..|..+..+++|++|+|++|+++ .+|.
T Consensus 473 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~ 538 (606)
T 3vq2_A 473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKG 538 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEES
T ss_pred CCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCH
Confidence 99999999999999988999999999999999999999888999999999999999999998 5654
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-49 Score=433.74 Aligned_cols=518 Identities=19% Similarity=0.183 Sum_probs=424.7
Q ss_pred CCCcccCccCCCCCcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCcccc-CccccCCCCCCEEeCCCccCCCCCC
Q 040451 21 LCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEI-PHEVSNLFRLQNLTLTNNYFSGKIL 99 (566)
Q Consensus 21 ~c~w~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~ 99 (566)
.|.|..+.+ ...++++|+|++|.+.+..+..+.++++|++|+|++|...+.+ |.+|.++++|++|+|++|.+....|
T Consensus 13 ~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p 90 (844)
T 3j0a_A 13 FCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90 (844)
T ss_dssp CCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred CCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence 356777766 3378999999999999888999999999999999999766566 7789999999999999999998889
Q ss_pred cccccCCCCCEEEccCCcccccCCcc--ccCCCCCCEEecccCcCCCCCc-hhhcCCCCCCEEEeeCCcccccCcccccc
Q 040451 100 TDLSHCSNVMKFEASNNKLEAEIPVE--IGNLLMLQILNIAENHLKGQLP-ASIGNLSALQEIDVRGNRLGGRIPSTISH 176 (566)
Q Consensus 100 ~~~~~l~~L~~L~L~~~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 176 (566)
..|..+++|++|++++|.+.+..+.. ++++++|++|++++|.+++..+ ..++++++|++|++++|.+.+..+..+..
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 99999999999999999998766655 8999999999999999986544 57899999999999999998888888888
Q ss_pred c--Cccceeeccccccccch-hhhhCCC------CCcEEEcccCcCcccCCccccC--CCCCccEEEccCC---------
Q 040451 177 V--RNLISFNVARNQFSGMI-PLIYNIS------SLQYIFIHTNRFHGSLPLDNGV--NLPNLRYFSISGN--------- 236 (566)
Q Consensus 177 l--~~L~~L~l~~~~~~~~~-~~l~~~~------~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~--------- 236 (566)
+ ++|+.|++++|.+.... ..+..++ .|++|++++|.+.+.++..+.. ....++.+.+..+
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccc
Confidence 7 89999999999887654 3333343 4999999999888777665542 2356788887633
Q ss_pred ccccccccccccC--CCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccC
Q 040451 237 NLTGSLQDSLSNA--TNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSN 314 (566)
Q Consensus 237 ~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 314 (566)
.+.......+.++ ++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+ ..+..+++|++|++++|
T Consensus 251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~------~~~~~l~~L~~L~Ls~N 324 (844)
T 3j0a_A 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD------EAFYGLDNLQVLNLSYN 324 (844)
T ss_dssp SSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT------TTTTTCSSCCEEEEESC
T ss_pred ccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh------HHhcCCCCCCEEECCCC
Confidence 2222333344444 689999999999988888889999999999999999887666 46778899999999999
Q ss_pred ccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCC
Q 040451 315 RFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIP 394 (566)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 394 (566)
.+.+..+..+..+ ++++.|++++|.+.+..+..+..+++|+.|++++|.+++. ..+++|+.|++++|+++ .+|
T Consensus 325 ~l~~~~~~~~~~l-~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~ 397 (844)
T 3j0a_A 325 LLGELYSSNFYGL-PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLP 397 (844)
T ss_dssp CCSCCCSCSCSSC-TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCC
T ss_pred CCCccCHHHhcCC-CCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccc
Confidence 9987777777665 5899999999999887777889999999999999988743 34889999999999988 445
Q ss_pred ccccCCCCCCeEecccCcceecCC-ccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCccee-----cCCc
Q 040451 395 SSLGNLTLLTQLILEVNNLQGKIP-PSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNG-----HFPA 468 (566)
Q Consensus 395 ~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~-----~~~~ 468 (566)
.. ..+++.+++++|++++... ..+..+++|+.|++++|++.+..+.......+.++.|++++|.+.. ..+.
T Consensus 398 ~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~ 474 (844)
T 3j0a_A 398 KI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD 474 (844)
T ss_dssp CC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSS
T ss_pred cc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchh
Confidence 33 5789999999999885322 2356899999999999998854443333334556999999999863 3345
Q ss_pred cccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCC
Q 040451 469 EVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFL 548 (566)
Q Consensus 469 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L 548 (566)
.|..+++|+.|++++|.+++..+..|.++++|++|+|++|++++..+..+. ++|+.|++++|++++..|..+ ++|
T Consensus 475 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L 549 (844)
T 3j0a_A 475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSL 549 (844)
T ss_dssp CSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSC
T ss_pred hhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCc
Confidence 688899999999999999988888899999999999999999976666665 899999999999998888765 489
Q ss_pred CeeeCCCCcCccc
Q 040451 549 SFLNLSYNHFEGK 561 (566)
Q Consensus 549 ~~L~l~~~~l~~~ 561 (566)
+.|++++|++..+
T Consensus 550 ~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 550 SVLDITHNKFICE 562 (844)
T ss_dssp CEEEEEEECCCCS
T ss_pred CEEEecCCCcccc
Confidence 9999999987653
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-48 Score=408.47 Aligned_cols=492 Identities=20% Similarity=0.209 Sum_probs=310.9
Q ss_pred CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEc
Q 040451 34 QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEA 113 (566)
Q Consensus 34 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 113 (566)
.++++|++++|.+.+..+..+.++++|++|+|++|.+.+..+++|+++++|++|++++|.++...+..|..+++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 46777777777777666667777777777777777776555566777777777777777776555566777777777777
Q ss_pred cCCcccccCCccccCCCCCCEEecccCcCCC-CCchhhcCCCCCCEEEeeCCcccccCcccccccCcc----ceeecccc
Q 040451 114 SNNKLEAEIPVEIGNLLMLQILNIAENHLKG-QLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNL----ISFNVARN 188 (566)
Q Consensus 114 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L----~~L~l~~~ 188 (566)
++|.+.+..+..++++++|++|++++|.+++ .+|..+.++++|++|++++|.+.+..+..+..+++| +.+++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 7777764433357777777777777777664 356777777777777777777766556666666666 66777777
Q ss_pred ccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccc------cccccccccCC--CCceEecccc
Q 040451 189 QFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLT------GSLQDSLSNAT--NLQGLEINGN 260 (566)
Q Consensus 189 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------~~~~~~l~~l~--~L~~L~l~~~ 260 (566)
.+....+......+|++|++++|.............++.++...+....+. ......+..++ .++.+++.++
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 267 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence 666555333333366667666653321111111113444444433321111 11111122222 1334444443
Q ss_pred -cccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEcccc
Q 040451 261 -LFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSN 339 (566)
Q Consensus 261 -~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 339 (566)
.+.+..+..+..+++|+.|+++++.+...+. .+..+ +|++|++++|.+.
T Consensus 268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-------~~~~~-~L~~L~l~~n~~~---------------------- 317 (570)
T 2z63_A 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-------FSYNF-GWQHLELVNCKFG---------------------- 317 (570)
T ss_dssp TEEESCSTTTTGGGTTCSEEEEESCEECSCCB-------CCSCC-CCSEEEEESCBCS----------------------
T ss_pred hhhhhhchhhhcCcCcccEEEecCccchhhhh-------hhccC-CccEEeeccCccc----------------------
Confidence 3333444445555555555555555443211 22333 5555555555443
Q ss_pred CccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccC--CccccCCCCCCeEecccCcceecC
Q 040451 340 QISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTI--PSSLGNLTLLTQLILEVNNLQGKI 417 (566)
Q Consensus 340 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~~~ 417 (566)
.+|. ..+++|+.|++++|.+....+. ..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..
T Consensus 318 ----~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 389 (570)
T 2z63_A 318 ----QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 389 (570)
T ss_dssp ----SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEE
T ss_pred ----ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccc
Confidence 2222 3456666666666665543332 45667777777777665332 455666677777777777666433
Q ss_pred CccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCccc-ccCCcCCcC
Q 040451 418 PPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFS-GEIPTTLGG 496 (566)
Q Consensus 418 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~ 496 (566)
+. +..+++|+.|++++|.+.+..+...+...+.++.|++++|.+.+..+..+..+++|++|++++|.+. +.+|..+..
T Consensus 390 ~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~ 468 (570)
T 2z63_A 390 SN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468 (570)
T ss_dssp EE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred cc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhc
Confidence 33 6667777777777777664444222222333477777777777777777888889999999999887 467888888
Q ss_pred CCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCcccCCC
Q 040451 497 CTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI 564 (566)
Q Consensus 497 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p~ 564 (566)
+++|++|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..|.
T Consensus 469 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 99999999999999887788888889999999999998877777788888999999999998887764
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-47 Score=418.42 Aligned_cols=504 Identities=19% Similarity=0.194 Sum_probs=416.5
Q ss_pred EEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCC-CcccccCCCCCEEEccC
Q 040451 37 TGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKI-LTDLSHCSNVMKFEASN 115 (566)
Q Consensus 37 ~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~ 115 (566)
+.++.++++++. +|. -.+++++|+|++|.+++..+..|.++++|++|++++|.....+ +..|.++++|++|+|++
T Consensus 7 ~~~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCCC-CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 457778888875 444 4579999999999999778889999999999999999654444 78899999999999999
Q ss_pred CcccccCCccccCCCCCCEEecccCcCCCCCchh--hcCCCCCCEEEeeCCcccccCc-ccccccCccceeecccccccc
Q 040451 116 NKLEAEIPVEIGNLLMLQILNIAENHLKGQLPAS--IGNLSALQEIDVRGNRLGGRIP-STISHVRNLISFNVARNQFSG 192 (566)
Q Consensus 116 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~ 192 (566)
|.+.+..|.+|+++++|++|++++|.+++..+.. +.++++|++|++++|.+.+..+ ..++++++|+.|++++|.+.+
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 9999888999999999999999999998766665 8999999999999999986544 578999999999999999877
Q ss_pred ch-hhhhCC--CCCcEEEcccCcCcccCCccccCCCC------CccEEEccCCcccccccccccc---CCCCceEecccc
Q 040451 193 MI-PLIYNI--SSLQYIFIHTNRFHGSLPLDNGVNLP------NLRYFSISGNNLTGSLQDSLSN---ATNLQGLEINGN 260 (566)
Q Consensus 193 ~~-~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~------~L~~L~l~~~~~~~~~~~~l~~---l~~L~~L~l~~~ 260 (566)
.. ..+..+ ++|+.|+++.|.+.+..+..+. .++ .|+.|++++|.+....+..+.. ...++.+.+..+
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG-KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC-SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred eCHHHcccccCCccceEECCCCccccccccchh-hcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 65 555555 8999999999999877776554 444 3999999999887666555543 256778877633
Q ss_pred c---------ccccccccccCC--CCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccc
Q 040451 261 L---------FSGKVSINFSRL--QNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSI 329 (566)
Q Consensus 261 ~---------~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 329 (566)
. +.+.....+..+ ++|+.|++++|.+....+ ..+..+++|+.|++++|.+.+..+..+..+ +
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~ 314 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS------RVFETLKDLKVLNLAYNKINKIADEAFYGL-D 314 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS------CCSSSCCCCCEEEEESCCCCEECTTTTTTC-S
T ss_pred cccccccccccCCCChhhhhccccCCccEEECCCCcccccCh------hhhhcCCCCCEEECCCCcCCCCChHHhcCC-C
Confidence 2 222233334443 789999999999877655 467789999999999999998878777765 5
Q ss_pred cccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 040451 330 TMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILE 409 (566)
Q Consensus 330 ~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 409 (566)
+++.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+++ ++ .+++|+.|+++
T Consensus 315 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~----~~~~L~~L~l~ 389 (844)
T 3j0a_A 315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IH----FIPSIPDIFLS 389 (844)
T ss_dssp SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CS----SCCSCSEEEEE
T ss_pred CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-cc----CCCCcchhccC
Confidence 99999999999998888899999999999999999988777789999999999999999873 22 38899999999
Q ss_pred cCcceecCCccccCCCCCcEEEccCCcccccCchh-hhccCCcCcEEEccCCcceecCCc-cccCCCCCCEEEccCCccc
Q 040451 410 VNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQ-LLHIITLPVLLDLSDNLLNGHFPA-EVGNLKNLVSLDISSNMFS 487 (566)
Q Consensus 410 ~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~-~~~~~~~l~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~ 487 (566)
+|+++ .+|.. ...++.+++++|.+.+..... +..++. ++.|++++|.+.+..+. .+..+++|+.|++++|.+.
T Consensus 390 ~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~ 464 (844)
T 3j0a_A 390 GNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPH-LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ 464 (844)
T ss_dssp SCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTT-CCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCS
T ss_pred CCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCc-cceeeCCCCcccccccccccccCCccccccCCCCccc
Confidence 99998 44433 568999999999998533222 334444 49999999999865433 4567899999999999997
Q ss_pred c-----cCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCcccC
Q 040451 488 G-----EIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKV 562 (566)
Q Consensus 488 ~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~ 562 (566)
. ..+..|.++++|++|+|++|.+++..|..|..+++|+.|++++|.++...+..+. ++|+.|+|++|++.+..
T Consensus 465 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~ 542 (844)
T 3j0a_A 465 LAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPN 542 (844)
T ss_dssp SSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCC
T ss_pred cccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCC
Confidence 3 3446688999999999999999988888899999999999999999977777665 89999999999999987
Q ss_pred CC
Q 040451 563 PI 564 (566)
Q Consensus 563 p~ 564 (566)
|.
T Consensus 543 ~~ 544 (844)
T 3j0a_A 543 PD 544 (844)
T ss_dssp SC
T ss_pred hh
Confidence 75
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-48 Score=419.24 Aligned_cols=484 Identities=18% Similarity=0.236 Sum_probs=264.4
Q ss_pred CccCCCCCCCCCCCCCCCC-----CC--CCc------------ccCccCCCCCcEEEEEcCCCCCcccCcccCcCCCCCc
Q 040451 1 MKSQLQDPLGVTSSWNNSI-----NL--CQW------------TGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPR 61 (566)
Q Consensus 1 ~~~~~~~~~~~~~~w~~~~-----~~--c~w------------~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~ 61 (566)
||+++.+| +|+.+. ++ |.| .||.|... ++|+.|+|+++++.|.+|+.++++++|+
T Consensus 277 ~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~-~~V~~L~Ls~~~L~G~ip~~l~~L~~L~ 350 (876)
T 4ecn_A 277 IWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-GRVTGLSLAGFGAKGRVPDAIGQLTELK 350 (876)
T ss_dssp HHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT-SCEEEEECTTTCCEEEECGGGGGCTTCC
T ss_pred HHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecCC-CCEEEEECccCCCCCcCchHHhccccce
Confidence 45667676 898765 55 999 99999864 8999999999999999999999999999
Q ss_pred EEEc-CCCCCccccCccccCCC-CCC-----EE---------eCC-CccCCC-----------CCCcccccCCCCCEEEc
Q 040451 62 SINL-PNKSFRGEIPHEVSNLF-RLQ-----NL---------TLT-NNYFSG-----------KILTDLSHCSNVMKFEA 113 (566)
Q Consensus 62 ~L~L-~~~~~~~~~~~~~~~l~-~L~-----~L---------~l~-~~~~~~-----------~~~~~~~~l~~L~~L~L 113 (566)
+|+| ++|.+.+..+....... .+. .+ +.. ...+.. ..+........++.+.+
T Consensus 351 ~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l 430 (876)
T 4ecn_A 351 VLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQI 430 (876)
T ss_dssp EEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTT
T ss_pred EeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhcee
Confidence 9999 78877655332111000 000 00 000 000000 00000111122222223
Q ss_pred cC--CcccccCCccccCCCCCCEEecccCcCCC-----------------CCchhhc--CCCCCCEEEeeCCcccccCcc
Q 040451 114 SN--NKLEAEIPVEIGNLLMLQILNIAENHLKG-----------------QLPASIG--NLSALQEIDVRGNRLGGRIPS 172 (566)
Q Consensus 114 ~~--~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-----------------~~~~~l~--~l~~L~~L~l~~~~~~~~~~~ 172 (566)
.. |.+++ +|..++++++|++|++++|.+++ .+|..++ ++++|++|++++|.+.+.+|.
T Consensus 431 ~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~ 509 (876)
T 4ecn_A 431 GNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD 509 (876)
T ss_dssp TCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG
T ss_pred ccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChH
Confidence 22 44443 55556666666666666666554 2555555 666666666666666556666
Q ss_pred cccccCccceeeccccc-ccc--chhhhh-------CCCCCcEEEcccCcCcccCCc--cccCCCCCccEEEccCCcccc
Q 040451 173 TISHVRNLISFNVARNQ-FSG--MIPLIY-------NISSLQYIFIHTNRFHGSLPL--DNGVNLPNLRYFSISGNNLTG 240 (566)
Q Consensus 173 ~l~~l~~L~~L~l~~~~-~~~--~~~~l~-------~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~ 240 (566)
.+.++++|+.|++++|. +.+ .+..+. .+++|++|++++|.+. .+|. .+. .+++|+.|++++|.+.
T Consensus 510 ~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~-~L~~L~~L~Ls~N~l~- 586 (876)
T 4ecn_A 510 FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ-KMVKLGLLDCVHNKVR- 586 (876)
T ss_dssp GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT-TCTTCCEEECTTSCCC-
T ss_pred HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh-cCCCCCEEECCCCCcc-
Confidence 66666666666666665 543 222222 3346777777777766 6665 343 6677777777777766
Q ss_pred ccccccccCCCCceEecccccccccccccccCCCC-CCEEECCCCcCCCCCCCChhhhhhhcCC--CCCCEEEcccCccc
Q 040451 241 SLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQN-LSRLNLGENNLGTGTANDLDFITLLTNC--TKLEVLDLHSNRFG 317 (566)
Q Consensus 241 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~ 317 (566)
..| .+..+++|+.|++++|.+. ..|..+..+++ |+.|++++|.+...+. .+... ++|+.|++++|.+.
T Consensus 587 ~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~-------~~~~~~~~~L~~L~Ls~N~l~ 657 (876)
T 4ecn_A 587 HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPN-------IFNAKSVYVMGSVDFSYNKIG 657 (876)
T ss_dssp BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCS-------CCCTTCSSCEEEEECCSSCTT
T ss_pred cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCch-------hhhccccCCCCEEECcCCcCC
Confidence 445 5666777777777777766 55555666666 7777777777653221 22222 33666676666665
Q ss_pred cccchhHhhccccccEEEccccCccCccchhhh--ccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCc
Q 040451 318 GVLPFSLANLSITMTEIANGSNQISGTIPDVIA--NLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPS 395 (566)
Q Consensus 318 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 395 (566)
+..|.. +..+. .+++|+.|++++|.++......+..+++|++|++++|.+. .+|.
T Consensus 658 g~ip~l----------------------~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~ 714 (876)
T 4ecn_A 658 SEGRNI----------------------SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPE 714 (876)
T ss_dssp TTSSSC----------------------SSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCT
T ss_pred Cccccc----------------------hhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccCh
Confidence 433211 00111 1234555555555554322222334555555555555554 3332
Q ss_pred cccC--------CCCCCeEecccCcceecCCcccc--CCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceec
Q 040451 396 SLGN--------LTLLTQLILEVNNLQGKIPPSIG--NCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGH 465 (566)
Q Consensus 396 ~~~~--------l~~L~~L~l~~~~l~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~ 465 (566)
.+.. +++|++|++++|+++ .+|..+. .+++|+.|++++|.+. +
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~-------------------------~- 767 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS-------------------------S- 767 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCS-------------------------S-
T ss_pred HHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCC-------------------------c-
Confidence 2221 114444444444444 3333333 4444444444444443 1
Q ss_pred CCccccCCCCCCEEEccC------CcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCC
Q 040451 466 FPAEVGNLKNLVSLDISS------NMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIP 539 (566)
Q Consensus 466 ~~~~l~~~~~L~~L~l~~------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 539 (566)
+|..+..+++|+.|++++ |.+.+.+|..+..+++|++|+|++|++. .+|..+. ++|+.|+|++|++....+
T Consensus 768 lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNISIDV 844 (876)
T ss_dssp CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEEC
T ss_pred cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCccCh
Confidence 223334444444444433 5555566666666667777777777663 5555543 567777777777665554
Q ss_pred ccCcCCCCCCeeeCCCC
Q 040451 540 QYLENLSFLSFLNLSYN 556 (566)
Q Consensus 540 ~~l~~~~~L~~L~l~~~ 556 (566)
..+.....+..+.|.+|
T Consensus 845 ~~~~~~~~~~~~~L~~n 861 (876)
T 4ecn_A 845 TSVCPYIEAGMYVLLYD 861 (876)
T ss_dssp GGGHHHHHTTCCEEECC
T ss_pred HHccccccchheeecCC
Confidence 44433333444444443
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4e-49 Score=416.57 Aligned_cols=463 Identities=20% Similarity=0.302 Sum_probs=265.1
Q ss_pred CCCCCCCCCCCCCCCc---ccCccCCCCCcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCc------c------c
Q 040451 9 LGVTSSWNNSINLCQW---TGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFR------G------E 73 (566)
Q Consensus 9 ~~~~~~w~~~~~~c~w---~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~------~------~ 73 (566)
-+...+|+.+.++|.| .||+|... ++|+.|+|+++++.|.+|+.++++++|++|+|++|.+. + .
T Consensus 54 ~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~ 132 (636)
T 4eco_A 54 TQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISAN 132 (636)
T ss_dssp ----CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTT
T ss_pred CccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccC
Confidence 3445589999999999 99999876 89999999999999999999999999999999999752 1 1
Q ss_pred cCccccCCCCCCEEeCCCccCCCCCCccccc-------------------CCCCCEEEcc--CCcccccCCccccCCCCC
Q 040451 74 IPHEVSNLFRLQNLTLTNNYFSGKILTDLSH-------------------CSNVMKFEAS--NNKLEAEIPVEIGNLLML 132 (566)
Q Consensus 74 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-------------------l~~L~~L~L~--~~~~~~~~~~~~~~l~~L 132 (566)
+|... +..|+ ++++++.+....+..+.. ...++.+.+. +|.+++ +|..++++++|
T Consensus 133 ~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L 208 (636)
T 4eco_A 133 MSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKL 208 (636)
T ss_dssp CCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTC
T ss_pred chHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCC
Confidence 22211 22333 444444333333322220 1112222221 345554 56666666666
Q ss_pred CEEecccCcCCCC-----------------Cchhhc--CCCCCCEEEeeCCcccccCcccccccCccceeeccccc-ccc
Q 040451 133 QILNIAENHLKGQ-----------------LPASIG--NLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQ-FSG 192 (566)
Q Consensus 133 ~~L~l~~~~i~~~-----------------~~~~l~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~ 192 (566)
++|++++|.+++. +|..++ ++++|++|++++|.+.+.+|..+.++++|+.|++++|. +.+
T Consensus 209 ~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~ 288 (636)
T 4eco_A 209 RQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG 288 (636)
T ss_dssp CEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCH
T ss_pred CEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcc
Confidence 6666666666643 666666 66666666666666666666666666666666666665 554
Q ss_pred --chhhhhCC------CCCcEEEcccCcCcccCCc--cccCCCCCccEEEccCCccccccccccccCCCCceEecccccc
Q 040451 193 --MIPLIYNI------SSLQYIFIHTNRFHGSLPL--DNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLF 262 (566)
Q Consensus 193 --~~~~l~~~------~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 262 (566)
.+..+..+ ++|++|++++|.+. .+|. .+. .+++|++|++++|.+.+..| .+..+++|+.|++++|.+
T Consensus 289 ~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~-~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l 365 (636)
T 4eco_A 289 EQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ-KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQI 365 (636)
T ss_dssp HHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT-TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEE
T ss_pred ccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc-cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCcc
Confidence 33444443 66777777776666 5665 343 66677777777776665555 566667777777777766
Q ss_pred cccccccccCCCC-CCEEECCCCcCCCCCCCChhhhhhhcC--CCCCCEEEcccCccccccchhHhhccccccEEEcccc
Q 040451 263 SGKVSINFSRLQN-LSRLNLGENNLGTGTANDLDFITLLTN--CTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSN 339 (566)
Q Consensus 263 ~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 339 (566)
. ..|..+..+++ |+.|++++|.+...+. .+.. +++|++|++++|.+.+..|..+....
T Consensus 366 ~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~-------~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~----------- 426 (636)
T 4eco_A 366 T-EIPANFCGFTEQVENLSFAHNKLKYIPN-------IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD----------- 426 (636)
T ss_dssp E-ECCTTSEEECTTCCEEECCSSCCSSCCS-------CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC-----------
T ss_pred c-cccHhhhhhcccCcEEEccCCcCcccch-------hhhhcccCccCEEECcCCcCCCcchhhhcccc-----------
Confidence 6 55555666666 7777777777653222 2222 34677777777777655444332100
Q ss_pred CccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCcc-ccCC-------CCCCeEecccC
Q 040451 340 QISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSS-LGNL-------TLLTQLILEVN 411 (566)
Q Consensus 340 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~l-------~~L~~L~l~~~ 411 (566)
.....+++|+.|++++|.++...+..+..+++|++|++++|.++ .+|.. +... ++|++|++++|
T Consensus 427 -------~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N 498 (636)
T 4eco_A 427 -------PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFN 498 (636)
T ss_dssp -------SSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSS
T ss_pred -------cccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCC
Confidence 00012334555555555555333333344555555555555555 33222 1111 25666666666
Q ss_pred cceecCCcccc--CCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEc------cC
Q 040451 412 NLQGKIPPSIG--NCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDI------SS 483 (566)
Q Consensus 412 ~l~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l------~~ 483 (566)
+++ .+|..+. .+++|+.|++++|++.+ +|.. +..+++|+.|++ ++
T Consensus 499 ~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~-------------------------~~~l~~L~~L~Ls~N~~ls~ 551 (636)
T 4eco_A 499 KLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQ-------------------------PLNSSTLKGFGIRNQRDAQG 551 (636)
T ss_dssp CCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCG-------------------------GGGCSSCCEEECCSCBCTTC
T ss_pred cCC-ccChhhhhccCCCcCEEECCCCCCCC-cChh-------------------------hhcCCCCCEEECCCCccccc
Confidence 655 4444444 55555555555555542 2222 233333444443 34
Q ss_pred CcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccc
Q 040451 484 NMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSG 536 (566)
Q Consensus 484 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 536 (566)
|.+.+.+|..+..+++|++|++++|++. .+|..+. ++|+.|++++|++..
T Consensus 552 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 552 NRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCE
T ss_pred CcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcc
Confidence 4455455555555666666666666653 4444443 566666666665543
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.5e-47 Score=400.63 Aligned_cols=467 Identities=17% Similarity=0.183 Sum_probs=271.9
Q ss_pred cEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEcc
Q 040451 35 RVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEAS 114 (566)
Q Consensus 35 ~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~ 114 (566)
++++|++++|.+.+..+..++++++|++|+|++|.+.+..|+++.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence 56666666666665555566666666666666666665455556666666666666666664444446666666666666
Q ss_pred CCcccc-cCCccccCCCCCCEEecccCcCCCCCc-hhhcCCCCCCEEEeeCCcccccCcccccccCccceeecccccccc
Q 040451 115 NNKLEA-EIPVEIGNLLMLQILNIAENHLKGQLP-ASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSG 192 (566)
Q Consensus 115 ~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 192 (566)
+|.+.+ ..|..++++++|++|++++|.+.+.++ ..+..+++|++|++++|.+.+..|..+.++++|+.|+++.|.+..
T Consensus 107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 186 (549)
T 2z81_A 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF 186 (549)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT
T ss_pred CCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccc
Confidence 666653 234456666666666666665322333 455666666666666666665566666666666666666665554
Q ss_pred chhh-hhCCCCCcEEEcccCcCcccC--CccccCCCCCccEEEccCCccccccc----cccccCCCCceEeccccccccc
Q 040451 193 MIPL-IYNISSLQYIFIHTNRFHGSL--PLDNGVNLPNLRYFSISGNNLTGSLQ----DSLSNATNLQGLEINGNLFSGK 265 (566)
Q Consensus 193 ~~~~-l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~ 265 (566)
.+.. +..+++|++|++++|.+.+.. +......+++|+.|+++++.+++..+ ..+..+++|+.+++++|.+.+
T Consensus 187 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~- 265 (549)
T 2z81_A 187 LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG- 265 (549)
T ss_dssp HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC-
T ss_pred cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc-
Confidence 4422 234566666666666655321 12222245556666666655543222 122344555555555554432
Q ss_pred ccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCcccccc----chhHhhccccccEEEccccCc
Q 040451 266 VSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVL----PFSLANLSITMTEIANGSNQI 341 (566)
Q Consensus 266 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~l~~l~l~~~~~ 341 (566)
...........+..+++++.+.+.++.+.... ...+......++++++++|.+
T Consensus 266 -----------------------~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l 322 (549)
T 2z81_A 266 -----------------------LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV 322 (549)
T ss_dssp -----------------------CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC
T ss_pred -----------------------cccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc
Confidence 11100000122344556666666665543211 011122234677777777766
Q ss_pred cCccchhh-hccCCCCEEecCCccccccchh---hccCCCCCCEEEccCCcccccCC--ccccCCCCCCeEecccCccee
Q 040451 342 SGTIPDVI-ANLVNLNALGVESNQLAGTIPL---AIGELKSLQMLFLNENFLRGTIP--SSLGNLTLLTQLILEVNNLQG 415 (566)
Q Consensus 342 ~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~ 415 (566)
. .+|..+ ..+++|+.|++++|.+++..+. .++.+++|++|++++|++++..+ ..+..+++|++|++++|+++
T Consensus 323 ~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~- 400 (549)
T 2z81_A 323 F-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH- 400 (549)
T ss_dssp C-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-
T ss_pred c-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-
Confidence 5 445444 5688888888888888765532 36677888888888888874322 45777888888888888887
Q ss_pred cCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCc
Q 040451 416 KIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLG 495 (566)
Q Consensus 416 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 495 (566)
.+|..+..+++|++|++++|.+. .++..+ ++.++.|++++|++.+. ...+++|++|++++|.++ .+|. ..
T Consensus 401 ~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~---~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~ 470 (549)
T 2z81_A 401 PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI---PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD-AS 470 (549)
T ss_dssp CCCSCCCCCTTCCEEECTTSCCS-CCCTTS---CTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC-GG
T ss_pred cCChhhcccccccEEECCCCCcc-cccchh---cCCceEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC-cc
Confidence 66777777888888888888876 333322 12346666666666532 235566666666666665 4444 34
Q ss_pred CCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCccccc
Q 040451 496 GCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGH 537 (566)
Q Consensus 496 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 537 (566)
.+++|++|++++|++++..|..+..+++|+.|++++|++.+.
T Consensus 471 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 471 LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp GCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred cCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence 556666666666666655555566666666666666666543
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=9.3e-45 Score=379.38 Aligned_cols=444 Identities=16% Similarity=0.158 Sum_probs=334.9
Q ss_pred CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCC-CCCcccccCCCCCEEE
Q 040451 34 QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSG-KILTDLSHCSNVMKFE 112 (566)
Q Consensus 34 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~ 112 (566)
.++++|++++|.+.+..+..++++++|++|+|++|.+.+..+..++++++|++|++++|.++. ..+..+..+++|++|+
T Consensus 50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 129 (549)
T 2z81_A 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129 (549)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEE
Confidence 689999999999998888999999999999999999996666679999999999999999985 3567899999999999
Q ss_pred ccCCcccccCC-ccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCccc-ccccCccceeecccccc
Q 040451 113 ASNNKLEAEIP-VEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPST-ISHVRNLISFNVARNQF 190 (566)
Q Consensus 113 L~~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~ 190 (566)
+++|...+.++ ..++++++|++|++++|.+++..|..+..+++|++|++++|.+. ..+.. +..+++|+.|++++|.+
T Consensus 130 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l 208 (549)
T 2z81_A 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNL 208 (549)
T ss_dssp EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBC
T ss_pred CCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcc
Confidence 99998544554 67999999999999999999888999999999999999999876 34443 35689999999999998
Q ss_pred ccch----hhhhCCCCCcEEEcccCcCcccCCccc---cCCCCCccEEEccCCcccccc------ccccccCCCCceEec
Q 040451 191 SGMI----PLIYNISSLQYIFIHTNRFHGSLPLDN---GVNLPNLRYFSISGNNLTGSL------QDSLSNATNLQGLEI 257 (566)
Q Consensus 191 ~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~------~~~l~~l~~L~~L~l 257 (566)
.+.. .....+++|+.|+++++.+.+..+..+ ...+++|+.+++++|.+.... ...+..+++++.|++
T Consensus 209 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 288 (549)
T 2z81_A 209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI 288 (549)
T ss_dssp TTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEE
T ss_pred ccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccc
Confidence 8753 333467899999999998775433221 136789999999999876431 112344556666666
Q ss_pred ccccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEcc
Q 040451 258 NGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANG 337 (566)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~ 337 (566)
.++.+..... +..+ .......++|++|++++|.+. ..|..+....+++++|+++
T Consensus 289 ~~~~i~~~~~--~~~l-----------------------~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls 342 (549)
T 2z81_A 289 RRLHIPQFYL--FYDL-----------------------STVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLS 342 (549)
T ss_dssp ESCBCSCGGG--SCCC-----------------------CHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECC
T ss_pred cccccchhhh--cccc-----------------------hhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEcc
Confidence 5554331110 0000 011222345666666666554 3333333223466666666
Q ss_pred ccCccCccc---hhhhccCCCCEEecCCccccccch--hhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCc
Q 040451 338 SNQISGTIP---DVIANLVNLNALGVESNQLAGTIP--LAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNN 412 (566)
Q Consensus 338 ~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 412 (566)
+|.+.+..+ ..++.+++|+.|++++|.+++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|+
T Consensus 343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSC
T ss_pred CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCC
Confidence 666655443 236678889999999998875532 45788899999999999888 677788888999999999998
Q ss_pred ceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCc
Q 040451 413 LQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPT 492 (566)
Q Consensus 413 l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 492 (566)
++ .++..+ .++|++|++++|++++. + ..++ .++.|++++|++. .+|. ...+++|+.|++++|.+++..+.
T Consensus 422 l~-~l~~~~--~~~L~~L~Ls~N~l~~~-~---~~l~-~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~ 491 (549)
T 2z81_A 422 IR-VVKTCI--PQTLEVLDVSNNNLDSF-S---LFLP-RLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDG 491 (549)
T ss_dssp CS-CCCTTS--CTTCSEEECCSSCCSCC-C---CCCT-TCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTT
T ss_pred cc-cccchh--cCCceEEECCCCChhhh-c---ccCC-hhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHH
Confidence 87 333332 36899999999988743 2 2333 4489999999998 4554 46789999999999999987888
Q ss_pred CCcCCCCCcEEeCCCCcccccCC
Q 040451 493 TLGGCTSLEYLGMQDNSFTRSIP 515 (566)
Q Consensus 493 ~~~~~~~L~~L~l~~~~~~~~~~ 515 (566)
.+..+++|++|++++|++.+..|
T Consensus 492 ~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 492 IFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GGGGCTTCCEEECCSSCBCCCHH
T ss_pred HHhcCcccCEEEecCCCccCCCc
Confidence 89999999999999999876443
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-43 Score=372.60 Aligned_cols=465 Identities=18% Similarity=0.187 Sum_probs=338.7
Q ss_pred CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEc
Q 040451 34 QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEA 113 (566)
Q Consensus 34 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 113 (566)
.++++|++++|.+.+..+..++++++|++|+|++|.+++..++.|.++++|++|++++|.++...+..+..+++|++|++
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 131 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (570)
T ss_dssp SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEEC
T ss_pred CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEec
Confidence 68999999999999888889999999999999999999667788999999999999999998655557999999999999
Q ss_pred cCCcccc-cCCccccCCCCCCEEecccCcCCCCCchhhcCCCCC----CEEEeeCCcccccCcccccccCccceeecccc
Q 040451 114 SNNKLEA-EIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSAL----QEIDVRGNRLGGRIPSTISHVRNLISFNVARN 188 (566)
Q Consensus 114 ~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 188 (566)
++|.+.+ .+|..|+++++|++|++++|.+++..+..+..+++| ++|++++|.+....+..+... +|+.|++++|
T Consensus 132 ~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n 210 (570)
T 2z63_A 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNN 210 (570)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESC
T ss_pred CCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccc
Confidence 9999986 478999999999999999999997777888888888 899999999997777777665 8999999988
Q ss_pred ccccc--hhhhhCCCCCcEEEcccCcCcc-----cCCccccCCCC--CccEEEccCC-ccccccccccccCCCCceEecc
Q 040451 189 QFSGM--IPLIYNISSLQYIFIHTNRFHG-----SLPLDNGVNLP--NLRYFSISGN-NLTGSLQDSLSNATNLQGLEIN 258 (566)
Q Consensus 189 ~~~~~--~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~--~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~ 258 (566)
..... ...+..++.++...+....+.. .++...+..++ .++.+++.++ .+....+..+..+++|++|+++
T Consensus 211 ~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 290 (570)
T 2z63_A 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290 (570)
T ss_dssp CSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEE
T ss_pred cccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEec
Confidence 54432 2566778888776665433221 12222221222 3566777776 6666777888899999999999
Q ss_pred cccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccc
Q 040451 259 GNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGS 338 (566)
Q Consensus 259 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~ 338 (566)
++.+. ..+..+..+ +|+.|++++|.+...+. ..+++|++|++++|.+.+..+.
T Consensus 291 ~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~---------~~l~~L~~L~l~~n~~~~~~~~---------------- 343 (570)
T 2z63_A 291 SVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPT---------LKLKSLKRLTFTSNKGGNAFSE---------------- 343 (570)
T ss_dssp SCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCB---------CBCSSCCEEEEESCBSCCBCCC----------------
T ss_pred Cccch-hhhhhhccC-CccEEeeccCcccccCc---------ccccccCEEeCcCCcccccccc----------------
Confidence 99987 566677777 99999999998874332 3578899999998876644332
Q ss_pred cCccCccchhhhccCCCCEEecCCccccccc--hhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceec
Q 040451 339 NQISGTIPDVIANLVNLNALGVESNQLAGTI--PLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGK 416 (566)
Q Consensus 339 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 416 (566)
..+++|+.|++++|.+++.. +..+..+++|++|++++|.+.+. +..+..+++|++|++++|.+.+.
T Consensus 344 -----------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~ 411 (570)
T 2z63_A 344 -----------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQM 411 (570)
T ss_dssp -----------CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESC
T ss_pred -----------ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccc
Confidence 23444455555544444322 33444455555555555554422 22244455555555555554433
Q ss_pred CC-ccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcce-ecCCccccCCCCCCEEEccCCcccccCCcCC
Q 040451 417 IP-PSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLN-GHFPAEVGNLKNLVSLDISSNMFSGEIPTTL 494 (566)
Q Consensus 417 ~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 494 (566)
.+ ..+..+++|++|++++|.+.+..+..+..++.+ +.|++++|.+. +..|..+..+++|++|++++|.+++..|..+
T Consensus 412 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~ 490 (570)
T 2z63_A 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490 (570)
T ss_dssp TTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred cchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC-cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhh
Confidence 32 234445555555555555544344333333333 55555555554 3456678889999999999999997778889
Q ss_pred cCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCC
Q 040451 495 GGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIP 539 (566)
Q Consensus 495 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 539 (566)
..+++|++|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus 491 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 491 NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 999999999999999998777888999999999999999986544
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2e-43 Score=376.49 Aligned_cols=537 Identities=21% Similarity=0.204 Sum_probs=375.4
Q ss_pred CCCCCCCCCCCCCC----CCCcc----cCccCCCC---------CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCC
Q 040451 7 DPLGVTSSWNNSIN----LCQWT----GVTCGHRR---------QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKS 69 (566)
Q Consensus 7 ~~~~~~~~w~~~~~----~c~w~----~~~~~~~~---------~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 69 (566)
|+..++..|+.+.+ .|.+. .+.|.... ..+++|+|++|.+++..+..|.++++|++|+|++|+
T Consensus 8 ~~~~~~~~~~~~~p~~~~~c~~~~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~ 87 (635)
T 4g8a_A 8 DDDDKLAAANSSIPESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE 87 (635)
T ss_dssp -----------------CCSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CCcchhhcccCCCCCCCCCccccCCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc
Confidence 45556666664443 45442 34565432 478888888888887777788888888888888888
Q ss_pred CccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCC-CCch
Q 040451 70 FRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKG-QLPA 148 (566)
Q Consensus 70 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~ 148 (566)
+++..+++|.++++|++|+|++|.++...+..|.++++|++|++++|++++..+..|+++++|++|++++|.++. ..|.
T Consensus 88 i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~ 167 (635)
T 4g8a_A 88 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 167 (635)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG
T ss_pred CCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCch
Confidence 885556678888888888888888876556678888888888888888886555668888888888888888764 3567
Q ss_pred hhcCCCCCCEEEeeCCcccccCcccccccCccc----eeeccccccccchhhhhCCCCCcEEEcccCcCcccCCccccCC
Q 040451 149 SIGNLSALQEIDVRGNRLGGRIPSTISHVRNLI----SFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVN 224 (566)
Q Consensus 149 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 224 (566)
.+..+++|++|++++|.+.+..+..+..+.+++ .++++.|.+............++.+++.++.....+....+..
T Consensus 168 ~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~ 247 (635)
T 4g8a_A 168 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG 247 (635)
T ss_dssp GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHT
T ss_pred hhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcC
Confidence 778888888888888888877777776655543 5667777776666555555566777777665443333222234
Q ss_pred CCCccEEEccCCc------cccccccccccCCCCceEeccccccc---ccccccccCCCCCCEEECCCCcCCCCCCCChh
Q 040451 225 LPNLRYFSISGNN------LTGSLQDSLSNATNLQGLEINGNLFS---GKVSINFSRLQNLSRLNLGENNLGTGTANDLD 295 (566)
Q Consensus 225 ~~~L~~L~l~~~~------~~~~~~~~l~~l~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 295 (566)
++.++...+..+. +.......+.....+....+..+... ......+....+++.+.+..+.+...
T Consensus 248 l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~------ 321 (635)
T 4g8a_A 248 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV------ 321 (635)
T ss_dssp TTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC------
T ss_pred Ccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc------
Confidence 5555554443221 11122223333444444444433221 12233345567777787777765432
Q ss_pred hhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCcccccc--chhhc
Q 040451 296 FITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGT--IPLAI 373 (566)
Q Consensus 296 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~ 373 (566)
..+.....++.|++.++.+....... ...++.+.+..+...... ....+++|+.+++++|.+... .+..+
T Consensus 322 --~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~ 393 (635)
T 4g8a_A 322 --KDFSYNFGWQHLELVNCKFGQFPTLK----LKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSD 393 (635)
T ss_dssp --GGGGSCCCCSEEEEESCEESSCCCCB----CTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHH
T ss_pred --cccccchhhhhhhcccccccCcCccc----chhhhhcccccccCCCCc--ccccccccccchhhccccccccccccch
Confidence 23455678888888888766443322 246777777777665432 345688899999998877533 34556
Q ss_pred cCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCC-ccccCCCCCcEEEccCCcccccCchhhhccCCcC
Q 040451 374 GELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIP-PSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLP 452 (566)
Q Consensus 374 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l 452 (566)
..+.+|+++++..+... ..+..+..+++|+.+++..+......+ ..+..+++++.++++.|.+.+..+..+..... +
T Consensus 394 ~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~-L 471 (635)
T 4g8a_A 394 FGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-L 471 (635)
T ss_dssp HSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT-C
T ss_pred hhhhhhhhhhccccccc-cccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchh-h
Confidence 67889999999988876 455667788999999999887765443 45778899999999999988555555444444 4
Q ss_pred cEEEccCCcc-eecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCC
Q 040451 453 VLLDLSDNLL-NGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSR 531 (566)
Q Consensus 453 ~~L~l~~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 531 (566)
+.|++++|.+ ....+..|..+++|+.|++++|.+++..|..|.++++|++|+|++|++++..+..|..+++|+.|++++
T Consensus 472 ~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 551 (635)
T 4g8a_A 472 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 551 (635)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTT
T ss_pred hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCC
Confidence 8999999875 345677889999999999999999988888999999999999999999987788899999999999999
Q ss_pred CcccccCCccCcCC-CCCCeeeCCCCcCc
Q 040451 532 NNLSGHIPQYLENL-SFLSFLNLSYNHFE 559 (566)
Q Consensus 532 n~~~~~~~~~l~~~-~~L~~L~l~~~~l~ 559 (566)
|++++..|+.+..+ ++|+.|+|++|++.
T Consensus 552 N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 552 NHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp SCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 99998888888887 68999999999765
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.5e-44 Score=370.67 Aligned_cols=458 Identities=17% Similarity=0.169 Sum_probs=278.7
Q ss_pred EEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCC
Q 040451 37 TGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNN 116 (566)
Q Consensus 37 ~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~ 116 (566)
++++++++.++ .+|..+. ++|++|+|++|.+.+..+..+.++++|++|++++|.+++..|..|..+++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 46899999988 4666565 89999999999998666678899999999999999998777888999999999999999
Q ss_pred cccccCCccccCCCCCCEEecccCcCCC-CCchhhcCCCCCCEEEeeCCcccccCcccccccCcc--ceeecccccc--c
Q 040451 117 KLEAEIPVEIGNLLMLQILNIAENHLKG-QLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNL--ISFNVARNQF--S 191 (566)
Q Consensus 117 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~--~ 191 (566)
+++ .+|.. .+++|++|++++|.+++ ..|..++++++|++|++++|.+.+ ..+..+++| +.|++++|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 988 56655 78899999999999885 367889999999999999998864 356677777 8888888887 3
Q ss_pred cch-hhhhCCC-CCcEEEcccCcCcccCCccccCCCCCccEEEccCCc-------cccccccccccCCCCceEecccccc
Q 040451 192 GMI-PLIYNIS-SLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNN-------LTGSLQDSLSNATNLQGLEINGNLF 262 (566)
Q Consensus 192 ~~~-~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~~l~~l~~L~~L~l~~~~~ 262 (566)
... ..+..+. ....+++++|.+.+.++...+..+++|+.+++++|. +....+ .+..+++|+.|+++++.+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 322 3333333 233566777777766666666677788888888775 443333 566777777777777765
Q ss_pred cccccccc---cCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccc-hhHhhccccccEEEccc
Q 040451 263 SGKVSINF---SRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLP-FSLANLSITMTEIANGS 338 (566)
Q Consensus 263 ~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~l~~l~l~~ 338 (566)
.+.....+ ...++|+.|++++|.+.+..+..+. ......+++|+.++++++.+ ..| ..+....
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~-~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~---------- 299 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDF-DYSGTSLKALSIHQVVSDVF--GFPQSYIYEIF---------- 299 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCC-CCCSCCCCEEEEEEEEECCC--CSCTHHHHHHH----------
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchh-hcccccCceeEeccccccce--ecchhhhhccc----------
Confidence 53222111 1134666666666665533331100 00014455555555555554 111 1111110
Q ss_pred cCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCccee--c
Q 040451 339 NQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQG--K 416 (566)
Q Consensus 339 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~ 416 (566)
...+|+.|++++|.+.... ....+++|++|++++|.+++..|..+..+++|++|++++|++++ .
T Consensus 300 ------------~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 365 (520)
T 2z7x_B 300 ------------SNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK 365 (520)
T ss_dssp ------------HTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHH
T ss_pred ------------ccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcccc
Confidence 1134555555555544221 11355556666666666555455555556666666666665553 2
Q ss_pred CCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcC
Q 040451 417 IPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGG 496 (566)
Q Consensus 417 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 496 (566)
+|..+..+++|++|++++|.+.+.+|...+...+.++.|++++|.+.+..+..+. ++|+.|++++|.++ .+|..+..
T Consensus 366 ~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~ 442 (520)
T 2z7x_B 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVK 442 (520)
T ss_dssp HHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGG
T ss_pred chHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhc
Confidence 3344555566666666655555333333222222224444444444333332222 45566666666555 45554455
Q ss_pred CCCCcEEeCCCCcccccCCc-CCCCCCCCCEEeCCCCccc
Q 040451 497 CTSLEYLGMQDNSFTRSIPS-TLSSLKSITELDLSRNNLS 535 (566)
Q Consensus 497 ~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~n~~~ 535 (566)
+++|++|++++|+++. +|. .+..+++|+.|++++|++.
T Consensus 443 l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 443 LEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp CTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCc
Confidence 5566666666665553 333 2555556666666666554
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7e-44 Score=369.89 Aligned_cols=460 Identities=17% Similarity=0.190 Sum_probs=347.0
Q ss_pred cEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccC
Q 040451 61 RSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAEN 140 (566)
Q Consensus 61 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~ 140 (566)
++|++++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|++++..|..|+++++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 57899999998 7887665 89999999999998766678999999999999999998777889999999999999999
Q ss_pred cCCCCCchhhcCCCCCCEEEeeCCcccc-cCcccccccCccceeeccccccccchhhhhCCCCC--cEEEcccCcC--cc
Q 040451 141 HLKGQLPASIGNLSALQEIDVRGNRLGG-RIPSTISHVRNLISFNVARNQFSGMIPLIYNISSL--QYIFIHTNRF--HG 215 (566)
Q Consensus 141 ~i~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L--~~L~l~~~~~--~~ 215 (566)
+++ .+|.. .+++|++|++++|.+.+ ..|..++++++|++|++++|.+.. ..+..+++| ++|++++|.+ .+
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccc
Confidence 998 56766 88999999999999886 467889999999999999998875 345556666 8888888877 44
Q ss_pred cCCccccCCCC-CccEEEccCCccccccc-cccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCC
Q 040451 216 SLPLDNGVNLP-NLRYFSISGNNLTGSLQ-DSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTAND 293 (566)
Q Consensus 216 ~~~~~~~~~~~-~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 293 (566)
..|..+. .+. +...+++++|.+....+ ..+..+++|+.+++++|. ........
T Consensus 155 ~~~~~l~-~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~------------------------~~~~~~~~ 209 (520)
T 2z7x_B 155 EDPEGLQ-DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL------------------------EDNKCSYF 209 (520)
T ss_dssp CCTTTTT-TCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECC------------------------STTTTHHH
T ss_pred ccccccc-ccccceEEEEeccCcchhhhhhhhhhcccceeeccccccc------------------------ccccccee
Confidence 4444332 221 12234455554433222 233445555555555543 10000000
Q ss_pred hhhhhhhcCCCCCCEEEcccCccccccchhHhh--ccccccEEEccccCccCccchhh-----hccCCCCEEecCCcccc
Q 040451 294 LDFITLLTNCTKLEVLDLHSNRFGGVLPFSLAN--LSITMTEIANGSNQISGTIPDVI-----ANLVNLNALGVESNQLA 366 (566)
Q Consensus 294 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~l~~l~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~ 366 (566)
......+..+++|+.|+++++.+.+..+..+.. ...+++.+++++|.+.+.+|..+ ..+++|+.++++++.+
T Consensus 210 ~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~- 288 (520)
T 2z7x_B 210 LSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF- 288 (520)
T ss_dssp HHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-
T ss_pred ecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-
Confidence 011124556667777777776665443322221 12377888888888777777777 8899999999999887
Q ss_pred ccch-hhccCC---CCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccc--c
Q 040451 367 GTIP-LAIGEL---KSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSG--T 440 (566)
Q Consensus 367 ~~~~-~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~--~ 440 (566)
..| ..+..+ .+|++|++++|.+.... ....+++|++|++++|++++..|..+..+++|+.|++++|.+.+ .
T Consensus 289 -~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 365 (520)
T 2z7x_B 289 -GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK 365 (520)
T ss_dssp -CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHH
T ss_pred -ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcccc
Confidence 333 333333 68999999999986332 23688999999999999998889999999999999999999985 4
Q ss_pred CchhhhccCCcCcEEEccCCcceecCCc-cccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCC
Q 040451 441 VPRQLLHIITLPVLLDLSDNLLNGHFPA-EVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLS 519 (566)
Q Consensus 441 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 519 (566)
+|..+..+..+ +.|++++|.+.+.++. .+..+++|++|++++|.+++..+..+. ++|++|++++|+++ .+|..+.
T Consensus 366 ~~~~~~~l~~L-~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~ 441 (520)
T 2z7x_B 366 IAEMTTQMKSL-QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVV 441 (520)
T ss_dssp HHHHHTTCTTC-CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGG
T ss_pred chHHHhhCCCC-CEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhh
Confidence 45556666665 9999999999974554 488899999999999999877777665 89999999999999 6888777
Q ss_pred CCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCccc
Q 040451 520 SLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGK 561 (566)
Q Consensus 520 ~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 561 (566)
.+++|+.|++++|+++...+..+..+++|++|++++|++..+
T Consensus 442 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 442 KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence 999999999999999954444488999999999999998864
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.3e-44 Score=382.21 Aligned_cols=436 Identities=18% Similarity=0.225 Sum_probs=272.0
Q ss_pred CCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCC------C------CCCcccccCCCCCEEEccCCcccccCCcc
Q 040451 58 SFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFS------G------KILTDLSHCSNVMKFEASNNKLEAEIPVE 125 (566)
Q Consensus 58 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~------~------~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ 125 (566)
.+++.|+|+++.+.+.+|.+++++++|++|++++|.+. + ..|... +..|+ ++++++.+.+..+..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 57999999999999999999999999999999999752 1 112111 34555 666666665555544
Q ss_pred ccCC-CCCCEEecc--------------------cCcCCCCCchhhcCCCCCCEEEeeCCccccc---------------
Q 040451 126 IGNL-LMLQILNIA--------------------ENHLKGQLPASIGNLSALQEIDVRGNRLGGR--------------- 169 (566)
Q Consensus 126 ~~~l-~~L~~L~l~--------------------~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~--------------- 169 (566)
+..+ ..+..+++. .|++++ +|..++++++|++|++++|.+++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~ 236 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ 236 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhc
Confidence 4411 111111211 234443 555555555555555555555542
Q ss_pred --CcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCc-ccc-ccccc
Q 040451 170 --IPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNN-LTG-SLQDS 245 (566)
Q Consensus 170 --~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~ 245 (566)
+|..+. +.++++|++|++++|.+.+.+|..+. .+++|++|++++|. ++. ..|..
T Consensus 237 ~~ip~~l~---------------------~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~l~~~~lp~~ 294 (636)
T 4eco_A 237 QYKTEDLK---------------------WDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDD 294 (636)
T ss_dssp HHTTSCCC---------------------GGGCTTCCEEEEECCTTCSSCCTTTT-TCSSCCEEECTTCTTSCHHHHHHH
T ss_pred ccCchhhh---------------------hcccCCCCEEEecCCcCCccChHHHh-cCCCCCEEECcCCCCCccccchHH
Confidence 444444 00455555555555555555554443 55555555555555 544 34444
Q ss_pred cccC------CCCceEecccccccccccc--cccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccc
Q 040451 246 LSNA------TNLQGLEINGNLFSGKVSI--NFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFG 317 (566)
Q Consensus 246 l~~l------~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 317 (566)
+..+ ++|++|++++|.++ ..|. .+..+++|+.|++++|.+.+..+ .+..+++|++|++++|.+.
T Consensus 295 ~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-------~~~~l~~L~~L~L~~N~l~ 366 (636)
T 4eco_A 295 WQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-------AFGSEIKLASLNLAYNQIT 366 (636)
T ss_dssp HHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-------CCEEEEEESEEECCSSEEE
T ss_pred HHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-------hhCCCCCCCEEECCCCccc
Confidence 4443 56666666666665 4444 55566666666666665542211 2334445555555555544
Q ss_pred cccchhHhhccccccEEEccccCccCccchhhhccCC-CCEEecCCccccccchhhccCCC--CCCEEEccCCcccccCC
Q 040451 318 GVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVN-LNALGVESNQLAGTIPLAIGELK--SLQMLFLNENFLRGTIP 394 (566)
Q Consensus 318 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~ 394 (566)
.+|..+..+++ |+.|++++|.++ .+|..+...+ +|++|++++|.+.+..|
T Consensus 367 --------------------------~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 367 --------------------------EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp --------------------------ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred --------------------------cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcch
Confidence 22333444555 555555555555 3344443332 55666666666555555
Q ss_pred cccc-------CCCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCC-------cCcEEEccCC
Q 040451 395 SSLG-------NLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIIT-------LPVLLDLSDN 460 (566)
Q Consensus 395 ~~~~-------~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~-------~l~~L~l~~~ 460 (566)
..+. .+++|++|++++|.++...+..+..+++|+.|++++|.+. .+|...+.... .++.|++++|
T Consensus 420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N 498 (636)
T 4eco_A 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFN 498 (636)
T ss_dssp CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSS
T ss_pred hhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCC
Confidence 5554 4556666666666665322233444666666666666665 55554444332 4477788888
Q ss_pred cceecCCcccc--CCCCCCEEEccCCcccccCCcCCcCCCCCcEEeC------CCCcccccCCcCCCCCCCCCEEeCCCC
Q 040451 461 LLNGHFPAEVG--NLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGM------QDNSFTRSIPSTLSSLKSITELDLSRN 532 (566)
Q Consensus 461 ~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l------~~~~~~~~~~~~l~~l~~L~~L~l~~n 532 (566)
.+. .+|..+. .+++|++|++++|.+++ +|..+..+++|++|++ ++|++.+..|..+..+++|+.|++++|
T Consensus 499 ~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 576 (636)
T 4eco_A 499 KLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576 (636)
T ss_dssp CCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred cCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC
Confidence 777 5666665 89999999999999995 8888999999999999 567788889999999999999999999
Q ss_pred cccccCCccCcCCCCCCeeeCCCCcCcc
Q 040451 533 NLSGHIPQYLENLSFLSFLNLSYNHFEG 560 (566)
Q Consensus 533 ~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 560 (566)
++. .+|..+. ++|+.|+|++|++..
T Consensus 577 ~l~-~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 577 DIR-KVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CCC-BCCSCCC--TTCCEEECCSCTTCE
T ss_pred cCC-ccCHhHh--CcCCEEECcCCCCcc
Confidence 995 7777765 899999999998764
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.8e-41 Score=362.01 Aligned_cols=434 Identities=20% Similarity=0.264 Sum_probs=313.5
Q ss_pred CCCcEEEcCCCCCccccCccccCCCCCCEEeC-CCccCCCCCCcccccC-CCCCEEEc---------------cCCcccc
Q 040451 58 SFPRSINLPNKSFRGEIPHEVSNLFRLQNLTL-TNNYFSGKILTDLSHC-SNVMKFEA---------------SNNKLEA 120 (566)
Q Consensus 58 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l-~~~~~~~~~~~~~~~l-~~L~~L~L---------------~~~~~~~ 120 (566)
.+++.|+|+++.+.+.+|..+++++.|++|+| ++|.+++..+...... ..+....+ ....+..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57999999999999999999999999999999 8887765422211110 00000000 0000000
Q ss_pred -----------cCCccccCCCCCCEEeccc--CcCCCCCchhhcCCCCCCEEEeeCCcccc-----------------cC
Q 040451 121 -----------EIPVEIGNLLMLQILNIAE--NHLKGQLPASIGNLSALQEIDVRGNRLGG-----------------RI 170 (566)
Q Consensus 121 -----------~~~~~~~~l~~L~~L~l~~--~~i~~~~~~~l~~l~~L~~L~l~~~~~~~-----------------~~ 170 (566)
..+........++.+.+.. |++++ +|..++++++|++|++++|.+++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0011112223444444544 77886 89999999999999999999997 38
Q ss_pred ccccc--ccCccceeeccccccccch-hhhhCCCCCcEEEcccCc-Ccc-cCCcccc------CCCCCccEEEccCCccc
Q 040451 171 PSTIS--HVRNLISFNVARNQFSGMI-PLIYNISSLQYIFIHTNR-FHG-SLPLDNG------VNLPNLRYFSISGNNLT 239 (566)
Q Consensus 171 ~~~l~--~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~-~~~-~~~~~~~------~~~~~L~~L~l~~~~~~ 239 (566)
|..++ ++++|+.|++++|.+.+.. ..+..+++|++|++++|. +.+ .+|..+. ..+++|++|++++|.+.
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 88887 9999999999999876554 789999999999999998 876 6765432 35679999999999999
Q ss_pred ccccc--ccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCC-CCEEEcccCcc
Q 040451 240 GSLQD--SLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTK-LEVLDLHSNRF 316 (566)
Q Consensus 240 ~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~ 316 (566)
..|. .+..+++|+.|++++|.+. ..| .+..+++|+.|++++|.+...+ ..+..+++ |++|++++|.+
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp-------~~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIP-------EDFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCC-------TTSCEECTTCCEEECCSSCC
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccch-------HHHhhccccCCEEECcCCCC
Confidence 7777 8999999999999999998 566 7899999999999999887332 23556666 77777777776
Q ss_pred ccccchhHhhccccccEEEccccCccCccchhhhcc--CCCCEEecCCccccccchh---hcc--CCCCCCEEEccCCcc
Q 040451 317 GGVLPFSLANLSITMTEIANGSNQISGTIPDVIANL--VNLNALGVESNQLAGTIPL---AIG--ELKSLQMLFLNENFL 389 (566)
Q Consensus 317 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~---~~~--~~~~L~~L~l~~~~~ 389 (566)
. . +|..+..+ ++|+.|++++|.+.+..+. .+. .+++|++|++++|.+
T Consensus 632 ~-~-------------------------lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L 685 (876)
T 4ecn_A 632 K-Y-------------------------IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI 685 (876)
T ss_dssp C-S-------------------------CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCC
T ss_pred C-c-------------------------CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcC
Confidence 5 2 22223322 2366677776666543321 111 234677777777777
Q ss_pred cccCCccc-cCCCCCCeEecccCcceecCCccccC--------CCCCcEEEccCCcccccCchhhhccCCcCcEEEccCC
Q 040451 390 RGTIPSSL-GNLTLLTQLILEVNNLQGKIPPSIGN--------CQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDN 460 (566)
Q Consensus 390 ~~~~~~~~-~~l~~L~~L~l~~~~l~~~~~~~~~~--------~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~ 460 (566)
+ .+|..+ ..+++|+.|++++|+++ .+|..+.. +++| +.|++++|
T Consensus 686 ~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L-------------------------~~L~Ls~N 738 (876)
T 4ecn_A 686 Q-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLL-------------------------TTIDLRFN 738 (876)
T ss_dssp C-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGC-------------------------CEEECCSS
T ss_pred C-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCc-------------------------cEEECCCC
Confidence 6 444433 36677777777777666 33332221 1134 55555555
Q ss_pred cceecCCcccc--CCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCC------CcccccCCcCCCCCCCCCEEeCCCC
Q 040451 461 LLNGHFPAEVG--NLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQD------NSFTRSIPSTLSSLKSITELDLSRN 532 (566)
Q Consensus 461 ~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~l~~l~~L~~L~l~~n 532 (566)
.+. .+|..+. .+++|+.|++++|.+++ +|..+..+++|+.|+|++ |.+.+..|..+..+++|+.|++++|
T Consensus 739 ~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N 816 (876)
T 4ecn_A 739 KLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN 816 (876)
T ss_dssp CCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred CCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC
Confidence 555 4555665 89999999999999995 788899999999999976 7788889999999999999999999
Q ss_pred cccccCCccCcCCCCCCeeeCCCCcCcc
Q 040451 533 NLSGHIPQYLENLSFLSFLNLSYNHFEG 560 (566)
Q Consensus 533 ~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 560 (566)
++. .+|..+. ++|+.|+|++|++..
T Consensus 817 ~L~-~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 817 DIR-KVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp CCC-BCCSCCC--SSSCEEECCSCTTCE
T ss_pred CCC-ccCHhhc--CCCCEEECCCCCCCc
Confidence 994 7787765 799999999999864
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.4e-40 Score=349.41 Aligned_cols=509 Identities=17% Similarity=0.146 Sum_probs=390.1
Q ss_pred EEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcc
Q 040451 39 LDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKL 118 (566)
Q Consensus 39 l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 118 (566)
++=++.+++ .+|..+. +.+++|+|++|.++...+.+|.++++|++|+|++|.++...+.+|.++++|++|+|++|++
T Consensus 36 ~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 36 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence 344444555 3554442 4799999999999955567899999999999999999977778899999999999999999
Q ss_pred cccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccc-cCcccccccCccceeeccccccccch-hh
Q 040451 119 EAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGG-RIPSTISHVRNLISFNVARNQFSGMI-PL 196 (566)
Q Consensus 119 ~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~-~~ 196 (566)
++..+.+|.++++|++|++++|++++..+..++++++|++|++++|.+.. ..|..+..+++|++|++++|.+.+.. ..
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 192 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence 86666789999999999999999996666679999999999999999875 35777899999999999999998765 33
Q ss_pred hhCCC----CCcEEEcccCcCcccCCccccCCCCCccEEEccCCcccc-ccccccccCCCCceEecccccc------ccc
Q 040451 197 IYNIS----SLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTG-SLQDSLSNATNLQGLEINGNLF------SGK 265 (566)
Q Consensus 197 l~~~~----~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~------~~~ 265 (566)
+..+. ....++++.|.+. .++...+ ....++.+++.++.... ..+..+..+..++...+..+.. ...
T Consensus 193 l~~L~~l~~~~~~~~ls~n~l~-~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 270 (635)
T 4g8a_A 193 LRVLHQMPLLNLSLDLSLNPMN-FIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 270 (635)
T ss_dssp GHHHHTCTTCCCEEECTTCCCC-EECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred ccchhhhhhhhhhhhcccCccc-ccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccc
Confidence 33332 3446888888877 4444444 44567778888775442 2334566677777666543322 112
Q ss_pred ccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCcc
Q 040451 266 VSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTI 345 (566)
Q Consensus 266 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 345 (566)
....+.....+....+..+....... .....+.....++.+.+.++.+....... ....++.+++.++.+.+..
T Consensus 271 ~~~~~~~~~~l~~~~l~~~~~~~~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~ 344 (635)
T 4g8a_A 271 DKSALEGLCNLTIEEFRLAYLDYYLD---GIIDLFNCLTNVSSFSLVSVTIERVKDFS---YNFGWQHLELVNCKFGQFP 344 (635)
T ss_dssp CTTTTGGGGGSEEEEEEEECCCSCEE---ECTTTTGGGTTCSEEEEESCEEEECGGGG---SCCCCSEEEEESCEESSCC
T ss_pred cccccccccchhhhhhhhhhhccccc---chhhhhhhhcccccccccccccccccccc---cchhhhhhhcccccccCcC
Confidence 22334444555555444333221111 11133456678899999888766443321 2357899999998876543
Q ss_pred chhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccc--cCCccccCCCCCCeEecccCcceecCCccccC
Q 040451 346 PDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRG--TIPSSLGNLTLLTQLILEVNNLQGKIPPSIGN 423 (566)
Q Consensus 346 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~ 423 (566)
+ ..+..|+.+.+.++..... .....+++|+.+++++|.+.. ..+..+..+.+|+.+++..+... ..+..+..
T Consensus 345 ~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~ 418 (635)
T 4g8a_A 345 T---LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLG 418 (635)
T ss_dssp C---CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTT
T ss_pred c---ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccc
Confidence 3 3467888999988876533 234578999999999998753 35666778899999999999887 45567888
Q ss_pred CCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCccc-ccCCcCCcCCCCCcE
Q 040451 424 CQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFS-GEIPTTLGGCTSLEY 502 (566)
Q Consensus 424 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~ 502 (566)
+++|+.+++.++......+...+.....++.++++.|.+....+..+..++.|+.|++++|.+. ...|..|..+++|++
T Consensus 419 l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~ 498 (635)
T 4g8a_A 419 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 498 (635)
T ss_dssp CTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred cccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCE
Confidence 9999999999998876666555555555699999999999888888999999999999999865 357888999999999
Q ss_pred EeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCcccCCC
Q 040451 503 LGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI 564 (566)
Q Consensus 503 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p~ 564 (566)
|+|++|++++..|..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|+|++..|.
T Consensus 499 L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 560 (635)
T 4g8a_A 499 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 560 (635)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSS
T ss_pred EECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHH
Confidence 99999999998899999999999999999999988888999999999999999999987775
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.1e-41 Score=350.58 Aligned_cols=461 Identities=17% Similarity=0.169 Sum_probs=235.5
Q ss_pred EEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCC
Q 040451 37 TGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNN 116 (566)
Q Consensus 37 ~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~ 116 (566)
++++++++++++ +|..+. ++|++|+|++|.+.+..+..+.++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 667777777764 554443 67777777777777545566777777777777777777656666777777777777777
Q ss_pred cccccCCccccCCCCCCEEecccCcCCC-CCchhhcCCCCCCEEEeeCCcccccCcccccccCcc--ceeecccccc--c
Q 040451 117 KLEAEIPVEIGNLLMLQILNIAENHLKG-QLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNL--ISFNVARNQF--S 191 (566)
Q Consensus 117 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~--~ 191 (566)
.++ .+|.. .+++|++|++++|+++. ..|..+.++++|++|++++|.+... .+..+++| +.|++++|.+ .
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCC
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccc
Confidence 776 45544 66777777777777663 2346677777777777777766532 33334444 6666666555 2
Q ss_pred cch-hhhhCCC-CCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEeccccccc----cc
Q 040451 192 GMI-PLIYNIS-SLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFS----GK 265 (566)
Q Consensus 192 ~~~-~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~----~~ 265 (566)
+.. ..+..+. ..-.++++.|.+.+.++...+ ..+++|+.+++++|... ..
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~------------------------~~l~~L~~L~l~~n~~~~~~l~~ 240 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSV------------------------NALGHLQLSNIKLNDENCQRLMT 240 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEE------------------------SSEEEEEEEEEECCSTTHHHHHH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcc------------------------cccceEEEecccccccccchHHH
Confidence 221 1121111 001223333333322222222 23333444444333200 00
Q ss_pred ccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCcc
Q 040451 266 VSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTI 345 (566)
Q Consensus 266 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 345 (566)
....+..++.|+.+++.++.+....... . ......++|++|++++|.+.+..|..+....
T Consensus 241 ~~~~l~~l~~L~~L~L~~~~l~~~~~~~--~-~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~----------------- 300 (562)
T 3a79_B 241 FLSELTRGPTLLNVTLQHIETTWKCSVK--L-FQFFWPRPVEYLNIYNLTITERIDREEFTYS----------------- 300 (562)
T ss_dssp HHHHHHSCSSCEEEEEEEEEECHHHHHH--H-HHHHTTSSEEEEEEEEEEECSCCCCCCCCCC-----------------
T ss_pred HHHHHhccCcceEEEecCCcCcHHHHHH--H-HHhhhcccccEEEEeccEeeccccchhhhcc-----------------
Confidence 0111223333333333333221110000 0 0011123555555555555444333221000
Q ss_pred chhhhccCCCCEEecCCccccccch-hhcc---CCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccc
Q 040451 346 PDVIANLVNLNALGVESNQLAGTIP-LAIG---ELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSI 421 (566)
Q Consensus 346 ~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~ 421 (566)
...++.|+.+++..+.+ ..| ..+. ...+|++|++++|.+.... ....+++|++|++++|.+++..+..+
T Consensus 301 ---~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~ 373 (562)
T 3a79_B 301 ---ETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGC 373 (562)
T ss_dssp ---SCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTC
T ss_pred ---cccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhh
Confidence 02233333333333322 111 1110 1234555555555543111 11345555555555555554455555
Q ss_pred cCCCCCcEEEccCCcccc--cCchhhhccCCcCcEEEccCCcceecCC-ccccCCCCCCEEEccCCcccccCCcCCcCCC
Q 040451 422 GNCQNLILLTTRKNKLSG--TVPRQLLHIITLPVLLDLSDNLLNGHFP-AEVGNLKNLVSLDISSNMFSGEIPTTLGGCT 498 (566)
Q Consensus 422 ~~~~~L~~L~l~~~~l~~--~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 498 (566)
..+++|+.|++++|.+.+ .++..+..+..+ +.|++++|.+.+..+ ..+..+++|++|++++|.+++..+..+. +
T Consensus 374 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L-~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~ 450 (562)
T 3a79_B 374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSL-ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--P 450 (562)
T ss_dssp CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTC-CEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--T
T ss_pred cccCCCCEEECCCCCcCCcccchhhhcCCCCC-CEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--C
Confidence 555555555555555542 112223333333 555666665554233 2466667777777777777655554443 5
Q ss_pred CCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCccc
Q 040451 499 SLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGK 561 (566)
Q Consensus 499 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 561 (566)
+|++|++++|+++ .+|..+..+++|+.|++++|+++...+..+..+++|+.|++++|++.++
T Consensus 451 ~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 451 KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp TCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred cCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 7777777777777 4565555777777777777777733333366777777777777776653
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.5e-40 Score=347.61 Aligned_cols=436 Identities=17% Similarity=0.177 Sum_probs=281.0
Q ss_pred CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEc
Q 040451 34 QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEA 113 (566)
Q Consensus 34 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 113 (566)
.++++|++++|.+.+..+..+.++++|++|+|++|.+++..|++|.++++|++|++++|.++ .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 68999999999999888889999999999999999999777888999999999999999998 55655 8999999999
Q ss_pred cCCcccc-cCCccccCCCCCCEEecccCcCCCCCchhhcCCCCC--CEEEeeCCcc--cccCcccccccC--ccceeecc
Q 040451 114 SNNKLEA-EIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSAL--QEIDVRGNRL--GGRIPSTISHVR--NLISFNVA 186 (566)
Q Consensus 114 ~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L--~~L~l~~~~~--~~~~~~~l~~l~--~L~~L~l~ 186 (566)
++|.+.+ ..|..|+++++|++|++++|.++.. .+..+++| ++|++++|.+ .+..|..+..+. .+ .++++
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~ 204 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFH 204 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEEC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceE-EEEec
Confidence 9999985 3468899999999999999999853 45555666 9999999998 777777777665 33 45777
Q ss_pred ccccccch--hhhhCCCCCcEEEcccCcC-----cccCCccccCCCCCccEEEccCCcccccccc---ccccCCCCceEe
Q 040451 187 RNQFSGMI--PLIYNISSLQYIFIHTNRF-----HGSLPLDNGVNLPNLRYFSISGNNLTGSLQD---SLSNATNLQGLE 256 (566)
Q Consensus 187 ~~~~~~~~--~~l~~~~~L~~L~l~~~~~-----~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~l~~L~~L~ 256 (566)
.|.+.... ..+..+++|+.+++++|.. .+.+ ..+ ...+.|+.+++..+.+...... .....++|++|+
T Consensus 205 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~-~~l-~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~ 282 (562)
T 3a79_B 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL-SEL-TRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN 282 (562)
T ss_dssp SSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH-HHH-HSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEE
T ss_pred CccchhhhhhhcccccceEEEecccccccccchHHHHH-HHH-hccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEE
Confidence 77766533 3455678889999888741 1111 111 2456677777666654422110 011234667777
Q ss_pred cccccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccc-hhHhhc--cccccE
Q 040451 257 INGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLP-FSLANL--SITMTE 333 (566)
Q Consensus 257 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~--~~~l~~ 333 (566)
+++|.+.+..|..+... ....++.|+.+++..+.+ ..| ..+... ..++++
T Consensus 283 l~~n~l~~~ip~~~~~~-------------------------~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~ 335 (562)
T 3a79_B 283 IYNLTITERIDREEFTY-------------------------SETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKM 335 (562)
T ss_dssp EEEEEECSCCCCCCCCC-------------------------CSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSE
T ss_pred EeccEeeccccchhhhc-------------------------ccccchheehhhccccee--ecChhhhhhhhccCcceE
Confidence 77766655444433100 001222233333333322 111 111110 012333
Q ss_pred EEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCccccc--CCccccCCCCCCeEecccC
Q 040451 334 IANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGT--IPSSLGNLTLLTQLILEVN 411 (566)
Q Consensus 334 l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~ 411 (566)
+++++|.+.... ....+++|+.|++++|.+++..+..+..+++|++|++++|++++. .|..+..+++|++|++++|
T Consensus 336 L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N 413 (562)
T 3a79_B 336 LSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413 (562)
T ss_dssp EEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTS
T ss_pred EEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCC
Confidence 333333332111 013455666666666666655555566666666666666665531 2234555666666666666
Q ss_pred cceecCC-ccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccC
Q 040451 412 NLQGKIP-PSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEI 490 (566)
Q Consensus 412 ~l~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 490 (566)
++++.+| ..+..+++|+.|++++|.++ +..+..+. ++|+.|++++|.++ .+
T Consensus 414 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~-------------------------~~~~~~l~--~~L~~L~L~~N~l~-~i 465 (562)
T 3a79_B 414 SLNSHAYDRTCAWAESILVLNLSSNMLT-------------------------GSVFRCLP--PKVKVLDLHNNRIM-SI 465 (562)
T ss_dssp CCBSCCSSCCCCCCTTCCEEECCSSCCC-------------------------GGGGSSCC--TTCSEEECCSSCCC-CC
T ss_pred cCCCccChhhhcCcccCCEEECCCCCCC-------------------------cchhhhhc--CcCCEEECCCCcCc-cc
Confidence 6654233 23455555555555555554 33232222 57888888888887 66
Q ss_pred CcCCcCCCCCcEEeCCCCcccccCCcC-CCCCCCCCEEeCCCCcccc
Q 040451 491 PTTLGGCTSLEYLGMQDNSFTRSIPST-LSSLKSITELDLSRNNLSG 536 (566)
Q Consensus 491 ~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~n~~~~ 536 (566)
|..+..+++|++|++++|+++. +|.. +..+++|+.|++++|++.+
T Consensus 466 p~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 466 PKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCC
T ss_pred ChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCC
Confidence 6666688888888888888884 4444 7788888888888888764
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.3e-37 Score=313.53 Aligned_cols=380 Identities=17% Similarity=0.183 Sum_probs=234.8
Q ss_pred CEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccch--hhhhCCCCCcEEEccc
Q 040451 133 QILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMI--PLIYNISSLQYIFIHT 210 (566)
Q Consensus 133 ~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~l~~ 210 (566)
+.++.+++.++ .+|. + .++|++|++++|.+.+..|..+.++++|++|++++|.+.... ..+..+++|++|++++
T Consensus 13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 45677777777 5665 2 268999999999988777888888999999999888775332 5567778888888888
Q ss_pred CcCcccCCccccCCCCCccEEEccCCccccccccc--cccCCCCceEeccccccccccccc-ccCCCCCCEEECCCCcCC
Q 040451 211 NRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDS--LSNATNLQGLEINGNLFSGKVSIN-FSRLQNLSRLNLGENNLG 287 (566)
Q Consensus 211 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~ 287 (566)
|.+.+..|..+. .+++|++|++++|.+++..+.. +..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+.
T Consensus 89 n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 89 NQFLQLETGAFN-GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp CTTCEECTTTTT-TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CccCccChhhcc-CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 777654454444 6777777777777776533333 667777777777777776655554 567777777777777766
Q ss_pred CCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccc
Q 040451 288 TGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAG 367 (566)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 367 (566)
...+..+. .+ ...+++.++++++.+.+..+..+... ....+..+++|+.|++++|.+++
T Consensus 168 ~~~~~~l~---~l-~~~~L~~L~l~~n~l~~~~~~~~~~~-----------------~~~~~~~~~~L~~L~Ls~n~l~~ 226 (455)
T 3v47_A 168 SICEEDLL---NF-QGKHFTLLRLSSITLQDMNEYWLGWE-----------------KCGNPFKNTSITTLDLSGNGFKE 226 (455)
T ss_dssp CCCTTTSG---GG-TTCEEEEEECTTCBCTTCSTTCTTHH-----------------HHCCTTTTCEEEEEECTTSCCCH
T ss_pred ccChhhhh---cc-ccccccccccccCcccccchhhcccc-----------------ccccccccceeeeEecCCCcccc
Confidence 55442211 01 11456666666666554332221110 00112244566777777776665
Q ss_pred cchhhccC---CCCCCEEEccCCcccccC----------Ccccc--CCCCCCeEecccCcceecCCccccCCCCCcEEEc
Q 040451 368 TIPLAIGE---LKSLQMLFLNENFLRGTI----------PSSLG--NLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTT 432 (566)
Q Consensus 368 ~~~~~~~~---~~~L~~L~l~~~~~~~~~----------~~~~~--~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 432 (566)
..+..+.. .++|+.|++++|...+.. +..+. ..++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 227 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 306 (455)
T 3v47_A 227 SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTL 306 (455)
T ss_dssp HHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred cchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEEC
Confidence 55544432 366777777766543211 11111 1245666666666655555555555555555555
Q ss_pred cCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccc
Q 040451 433 RKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTR 512 (566)
Q Consensus 433 ~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 512 (566)
++|.+. +..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|++++
T Consensus 307 s~n~l~-------------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 361 (455)
T 3v47_A 307 AQNEIN-------------------------KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA 361 (455)
T ss_dssp TTSCCC-------------------------EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCE
T ss_pred CCCccc-------------------------ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccc
Confidence 555554 4444455666666666666666665555666666666666666666666
Q ss_pred cCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCcccCC
Q 040451 513 SIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVP 563 (566)
Q Consensus 513 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p 563 (566)
..|..+..+++|+.|++++|++++..+..+..+++|++|++++|++.+..|
T Consensus 362 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 362 LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 556666666666666666666665555555666666666666666666655
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.5e-38 Score=318.43 Aligned_cols=396 Identities=22% Similarity=0.242 Sum_probs=140.8
Q ss_pred CCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCC-------------CCEEEccCCcccccCC
Q 040451 57 LSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSN-------------VMKFEASNNKLEAEIP 123 (566)
Q Consensus 57 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-------------L~~L~L~~~~~~~~~~ 123 (566)
.++|++|++++|.+ +.+|+.++++++|++|++++|.+++..|..++.+++ +++|++++|.++ .+|
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCC
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCC
Confidence 34455555555544 345544555555555555555444444444444444 455666655554 233
Q ss_pred ccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCC
Q 040451 124 VEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSL 203 (566)
Q Consensus 124 ~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L 203 (566)
.. .++|++|++++|.+++ +|.. +++|++|++++|.+++ ++.. .++|++|++++|.+.+.+ .+..+++|
T Consensus 88 ~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L 155 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFL 155 (454)
T ss_dssp SC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSSCC-CCTTCTTC
T ss_pred CC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCCCc-ccCCCCCC
Confidence 21 2455666666665553 4432 2455666666555542 1111 134555555555544433 34444444
Q ss_pred cEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCC
Q 040451 204 QYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGE 283 (566)
Q Consensus 204 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 283 (566)
++|++++|.+. .+|.. .++|++|++++|.++. .+ .+..+++|+.|++++|.+.+ .+. ..++|+.|++++
T Consensus 156 ~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~ 224 (454)
T 1jl5_A 156 KIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPD---LPLSLESIVAGN 224 (454)
T ss_dssp CEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCS
T ss_pred CEEECCCCcCc-ccCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCC---CcCcccEEECcC
Confidence 55555444444 22221 2244444444444442 22 23444444444444444332 111 012334444444
Q ss_pred CcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCc
Q 040451 284 NNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESN 363 (566)
Q Consensus 284 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 363 (566)
|.+...+ .+..+++|++|++++|.+. + +|. .+++|+.|++++|
T Consensus 225 n~l~~lp--------~~~~l~~L~~L~l~~N~l~-------------------------~-l~~---~~~~L~~L~l~~N 267 (454)
T 1jl5_A 225 NILEELP--------ELQNLPFLTTIYADNNLLK-------------------------T-LPD---LPPSLEALNVRDN 267 (454)
T ss_dssp SCCSSCC--------CCTTCTTCCEEECCSSCCS-------------------------S-CCS---CCTTCCEEECCSS
T ss_pred CcCCccc--------ccCCCCCCCEEECCCCcCC-------------------------c-ccc---cccccCEEECCCC
Confidence 3332111 0223333333333333322 1 111 1134555555555
Q ss_pred cccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCC-CCCcEEEccCCcccccCc
Q 040451 364 QLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNC-QNLILLTTRKNKLSGTVP 442 (566)
Q Consensus 364 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~ 442 (566)
.+++ ++. .+++|++|++++|.+++ ++. ..++|++|++++|++++. + .. ++|+.|
T Consensus 268 ~l~~-l~~---~~~~L~~L~ls~N~l~~-l~~---~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L------------ 322 (454)
T 1jl5_A 268 YLTD-LPE---LPQSLTFLDVSENIFSG-LSE---LPPNLYYLNASSNEIRSL-C----DLPPSLEEL------------ 322 (454)
T ss_dssp CCSC-CCC---CCTTCCEEECCSSCCSE-ESC---CCTTCCEEECCSSCCSEE-C----CCCTTCCEE------------
T ss_pred cccc-cCc---ccCcCCEEECcCCccCc-ccC---cCCcCCEEECcCCcCCcc-c----CCcCcCCEE------------
Confidence 4443 111 12445555555555442 111 113455555555544421 1 11 244444
Q ss_pred hhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccc--cCCcCCCC
Q 040451 443 RQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTR--SIPSTLSS 520 (566)
Q Consensus 443 ~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~ 520 (566)
++++|.+.+ +|.. +++|++|++++|.++ .+|. .+++|++|++++|++++ .+|..+..
T Consensus 323 -------------~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~ 381 (454)
T 1jl5_A 323 -------------NVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED 381 (454)
T ss_dssp -------------ECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE
T ss_pred -------------ECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh
Confidence 444444442 2221 345555555555554 3333 24555555555555554 34444444
Q ss_pred C-------------CCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCcccCCC
Q 040451 521 L-------------KSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI 564 (566)
Q Consensus 521 l-------------~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p~ 564 (566)
+ ++|+.|++++|++++. +. +. ++++.|++.+|.+.+.+|.
T Consensus 382 L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~-~~-iP--~sl~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 382 LRMNSHLAEVPELPQNLKQLHVETNPLREF-PD-IP--ESVEDLRMNSERVVDPYEF 434 (454)
T ss_dssp EECCC----------------------------------------------------
T ss_pred hhhcccccccccccCcCCEEECCCCcCCcc-cc-ch--hhHhheeCcCcccCCcccc
Confidence 4 7899999999998852 11 21 4577888889888887663
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.1e-37 Score=315.86 Aligned_cols=364 Identities=17% Similarity=0.177 Sum_probs=231.4
Q ss_pred CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCcccc-CccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEE
Q 040451 34 QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEI-PHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFE 112 (566)
Q Consensus 34 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 112 (566)
.++++|++++|.+.+..+..++++++|++|+|++|.+.+.+ +..|.++++|++|++++|.++...+..+..+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 45677777777776666666777777777777777665444 34566677777777777776655566677777777777
Q ss_pred ccCCcccccCCcc--ccCCCCCCEEecccCcCCCCCchh-hcCCCCCCEEEeeCCcccccCccccccc--Cccceeeccc
Q 040451 113 ASNNKLEAEIPVE--IGNLLMLQILNIAENHLKGQLPAS-IGNLSALQEIDVRGNRLGGRIPSTISHV--RNLISFNVAR 187 (566)
Q Consensus 113 L~~~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~ 187 (566)
+++|.+++..+.. ++++++|++|++++|.+++..|.. +..+++|++|++++|.+.+..+..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 7777766533333 666777777777777776554554 5667777777777777666656666554 5666666666
Q ss_pred cccccchhh---------hhCCCCCcEEEcccCcCcccCCccccC--CCCCccEEEccCCccccccccccccCCCCceEe
Q 040451 188 NQFSGMIPL---------IYNISSLQYIFIHTNRFHGSLPLDNGV--NLPNLRYFSISGNNLTGSLQDSLSNATNLQGLE 256 (566)
Q Consensus 188 ~~~~~~~~~---------l~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 256 (566)
|.+.+.... +..+++|++|++++|.+.+..+..+.. ..++|+.+++++|........
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------------ 257 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG------------ 257 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT------------
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc------------
Confidence 665544311 223345555555555544333322210 124455555554433211000
Q ss_pred ccccccccccccccc--CCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEE
Q 040451 257 INGNLFSGKVSINFS--RLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEI 334 (566)
Q Consensus 257 l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l 334 (566)
.+.+.......+. ..++|+.|++++|.+....+ ..+..+++|++|++++|.+.+..
T Consensus 258 --~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~Ls~n~l~~~~-------------- 315 (455)
T 3v47_A 258 --HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK------SVFSHFTDLEQLTLAQNEINKID-------------- 315 (455)
T ss_dssp --CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT------TTTTTCTTCCEEECTTSCCCEEC--------------
T ss_pred --hhhhccCcccccccccccCceEEEecCccccccch------hhcccCCCCCEEECCCCcccccC--------------
Confidence 0011111111122 23678888998888876655 45677888888888888766432
Q ss_pred EccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcce
Q 040451 335 ANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQ 414 (566)
Q Consensus 335 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 414 (566)
+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|+++
T Consensus 316 -----------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 384 (455)
T 3v47_A 316 -----------DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384 (455)
T ss_dssp -----------TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred -----------hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccc
Confidence 344566777888888888777666777777888888888888887666777778888888888888887
Q ss_pred ecCCccccCCCCCcEEEccCCcccccCc
Q 040451 415 GKIPPSIGNCQNLILLTTRKNKLSGTVP 442 (566)
Q Consensus 415 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 442 (566)
+..+..+..+++|+.|++++|++.+..|
T Consensus 385 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 385 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCCHhHhccCCcccEEEccCCCcccCCC
Confidence 6555667778888888888888776655
No 28
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.5e-37 Score=297.58 Aligned_cols=280 Identities=26% Similarity=0.411 Sum_probs=247.4
Q ss_pred CccCCCCCCCCCCCCCCCCCCCC--cccCccCCCC--CcEEEEEcCCCCCcc--cCcccCcCCCCCcEEEcCC-CCCccc
Q 040451 1 MKSQLQDPLGVTSSWNNSINLCQ--WTGVTCGHRR--QRVTGLDLRQQSVGG--VLSPFVGNLSFPRSINLPN-KSFRGE 73 (566)
Q Consensus 1 ~~~~~~~~~~~~~~w~~~~~~c~--w~~~~~~~~~--~~v~~l~l~~~~~~~--~~~~~l~~l~~L~~L~L~~-~~~~~~ 73 (566)
||+++.||. ...+|+.+.+||. |.||.|.... ++|++|+++++.+.+ .+|..++++++|++|+|++ |.+.+.
T Consensus 14 ~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~ 92 (313)
T 1ogq_A 14 IKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP 92 (313)
T ss_dssp HHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC
T ss_pred HHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccccc
Confidence 466777887 7899999999999 9999997654 689999999999998 8999999999999999995 999989
Q ss_pred cCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCC
Q 040451 74 IPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNL 153 (566)
Q Consensus 74 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l 153 (566)
+|..++++++|++|++++|.+++..|..+..+++|++|++++|.+.+.+|..++++++|++|++++|++++.+|..+..+
T Consensus 93 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 172 (313)
T 1ogq_A 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF 172 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCC
T ss_pred CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhh
Confidence 99999999999999999999988889999999999999999999998899999999999999999999998899999999
Q ss_pred C-CCCEEEeeCCcccccCcccccccCccceeeccccccccch-hhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEE
Q 040451 154 S-ALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMI-PLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYF 231 (566)
Q Consensus 154 ~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 231 (566)
+ +|++|++++|.+.+..|..+..++ |+.|++++|.+.+.. ..+..+++|++|++++|.+.+.++. + ..+++|++|
T Consensus 173 ~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~-~~l~~L~~L 249 (313)
T 1ogq_A 173 SKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-V-GLSKNLNGL 249 (313)
T ss_dssp CTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-C-CCCTTCCEE
T ss_pred hhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-c-cccCCCCEE
Confidence 8 999999999999988899998887 999999999988655 6677888999999999888755554 3 367888888
Q ss_pred EccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCc
Q 040451 232 SISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENN 285 (566)
Q Consensus 232 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 285 (566)
++++|.+++..|..+..+++|+.|++++|.+++..|.. ..+++|+.+++++|.
T Consensus 250 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp ECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 88888888777888888888888888888888766664 677888888888776
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.2e-36 Score=307.28 Aligned_cols=390 Identities=21% Similarity=0.283 Sum_probs=207.3
Q ss_pred CCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEE
Q 040451 80 NLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEI 159 (566)
Q Consensus 80 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L 159 (566)
+.+.|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..++++++|+++++.+|.. .++++|
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L 76 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHEL 76 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEE
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEE
Confidence 357788888888888 47788888888888888888888777888888877764444443321 234555
Q ss_pred EeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccc
Q 040451 160 DVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLT 239 (566)
Q Consensus 160 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 239 (566)
++++|.+++ +|.. .++|+.|++++|.+.+.+. ..++|++|++++|.+. .++. ..++|++|++++|.++
T Consensus 77 ~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~lp~---~~~~L~~L~l~~n~l~-~l~~----~~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 77 ELNNLGLSS-LPEL---PPHLESLVASCNSLTELPE---LPQSLKSLLVDNNNLK-ALSD----LPPLLEYLGVSNNQLE 144 (454)
T ss_dssp ECTTSCCSC-CCSC---CTTCSEEECCSSCCSSCCC---CCTTCCEEECCSSCCS-CCCS----CCTTCCEEECCSSCCS
T ss_pred EecCCcccc-CCCC---cCCCCEEEccCCcCCcccc---ccCCCcEEECCCCccC-cccC----CCCCCCEEECcCCCCC
Confidence 555555542 2221 2455555555555554332 1245666666666554 2221 1246667777766666
Q ss_pred cccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccc
Q 040451 240 GSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGV 319 (566)
Q Consensus 240 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 319 (566)
. .| .+..+++|++|++++|.+++ .+.. .++|+.|++++|.+...+ .+..+++|++|++++|.+.+.
T Consensus 145 ~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l~--------~~~~l~~L~~L~l~~N~l~~l 210 (454)
T 1jl5_A 145 K-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEELP--------ELQNLPFLTAIYADNNSLKKL 210 (454)
T ss_dssp S-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSCC--------CCTTCTTCCEEECCSSCCSSC
T ss_pred C-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcCc--------cccCCCCCCEEECCCCcCCcC
Confidence 4 34 36666777777777766653 2322 246777777777665421 245666777777777665532
Q ss_pred cchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccC
Q 040451 320 LPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGN 399 (566)
Q Consensus 320 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 399 (566)
. .. .++|+.|++++|.+. .++ .+..+++|++|++++|++++ +|. .
T Consensus 211 ~--------------------------~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~ 255 (454)
T 1jl5_A 211 P--------------------------DL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---L 255 (454)
T ss_dssp C--------------------------CC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---C
T ss_pred C--------------------------CC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---c
Confidence 1 10 124555555555554 233 24455555555555555542 222 1
Q ss_pred CCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCC-CCCCE
Q 040451 400 LTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNL-KNLVS 478 (566)
Q Consensus 400 l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~-~~L~~ 478 (566)
+++|++|++++|++++ +|.. .++|+.|++++|.+.+ ++ ..+..++.|++++|.+.+. ..+ ++|++
T Consensus 256 ~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~----~~~~~L~~L~l~~N~l~~i-----~~~~~~L~~ 321 (454)
T 1jl5_A 256 PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LS----ELPPNLYYLNASSNEIRSL-----CDLPPSLEE 321 (454)
T ss_dssp CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ES----CCCTTCCEEECCSSCCSEE-----CCCCTTCCE
T ss_pred ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-cc----CcCCcCCEEECcCCcCCcc-----cCCcCcCCE
Confidence 2555666666655553 2221 2556666666666553 11 1123346677777766642 223 58999
Q ss_pred EEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccc--cCCccCcCC-----------
Q 040451 479 LDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSG--HIPQYLENL----------- 545 (566)
Q Consensus 479 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~~----------- 545 (566)
|++++|.+++ +|.. +++|++|++++|.++. +|. .+++|+.|++++|++++ .+|..+..+
T Consensus 322 L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~ 393 (454)
T 1jl5_A 322 LNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE 393 (454)
T ss_dssp EECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------
T ss_pred EECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccccccccc
Confidence 9999999984 6653 5899999999999994 665 46899999999999997 678888777
Q ss_pred --CCCCeeeCCCCcCcc--cCCC
Q 040451 546 --SFLSFLNLSYNHFEG--KVPI 564 (566)
Q Consensus 546 --~~L~~L~l~~~~l~~--~~p~ 564 (566)
++|+.|++++|++.+ ++|.
T Consensus 394 ~~~~L~~L~ls~N~l~~~~~iP~ 416 (454)
T 1jl5_A 394 LPQNLKQLHVETNPLREFPDIPE 416 (454)
T ss_dssp -----------------------
T ss_pred ccCcCCEEECCCCcCCccccchh
Confidence 899999999999998 8885
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.3e-34 Score=290.77 Aligned_cols=345 Identities=27% Similarity=0.384 Sum_probs=175.0
Q ss_pred CCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEe
Q 040451 57 LSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILN 136 (566)
Q Consensus 57 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 136 (566)
++++++|++.++.+. .++. +..+++|++|++++|.++.. +. +..+++|++|++++|.+.+. +. ++++++|++|+
T Consensus 45 l~~l~~L~l~~~~i~-~l~~-~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADI-TP-LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCC-CCTT-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEE
T ss_pred hccccEEecCCCCCc-cCcc-hhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccC-hh-hcCCCCCCEEE
Confidence 455556666555554 3442 45555555555555555532 22 55555555555555555432 22 55555555555
Q ss_pred cccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCccc
Q 040451 137 IAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGS 216 (566)
Q Consensus 137 l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 216 (566)
+++|.+++ ++. +..+++|++|++++|.+.+ ++ .+..+++|+.|++++ .+... ..+.
T Consensus 119 L~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~-~~~~~-~~~~------------------ 174 (466)
T 1o6v_A 119 LFNNQITD-IDP-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGN-QVTDL-KPLA------------------ 174 (466)
T ss_dssp CCSSCCCC-CGG-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEE-SCCCC-GGGT------------------
T ss_pred CCCCCCCC-ChH-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCC-cccCc-hhhc------------------
Confidence 55555552 222 4555555555555555442 11 244444444444431 11111 1122
Q ss_pred CCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCChhh
Q 040451 217 LPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDF 296 (566)
Q Consensus 217 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 296 (566)
.+++|++|++++|.+... ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+...
T Consensus 175 -------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~------- 236 (466)
T 1o6v_A 175 -------NLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI------- 236 (466)
T ss_dssp -------TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-------
T ss_pred -------cCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-------
Confidence 455555555555555432 235555666666666666554333 44555566666665554432
Q ss_pred hhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCC
Q 040451 297 ITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGEL 376 (566)
Q Consensus 297 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 376 (566)
..+..+++|++|++++|.+.+.. + +..+++|+.|++++|.+++..+ +..+
T Consensus 237 -~~l~~l~~L~~L~l~~n~l~~~~-------------------------~--~~~l~~L~~L~l~~n~l~~~~~--~~~l 286 (466)
T 1o6v_A 237 -GTLASLTNLTDLDLANNQISNLA-------------------------P--LSGLTKLTELKLGANQISNISP--LAGL 286 (466)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCCG-------------------------G--GTTCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred -hhhhcCCCCCEEECCCCccccch-------------------------h--hhcCCCCCEEECCCCccCcccc--ccCC
Confidence 12344555555555555443211 1 3445556666666665554322 5555
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEE
Q 040451 377 KSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLD 456 (566)
Q Consensus 377 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~ 456 (566)
++|++|++++|++.+..+ +..+++|++|++++|++++..+ +..+++|+.|++++|++.+
T Consensus 287 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~----------------- 345 (466)
T 1o6v_A 287 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD----------------- 345 (466)
T ss_dssp TTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-----------------
T ss_pred CccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC-----------------
Confidence 666666666666553222 4555666666666665554332 4455555555555555441
Q ss_pred ccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccc
Q 040451 457 LSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTR 512 (566)
Q Consensus 457 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 512 (566)
. ..+..+++|+.|++++|.+++..| +..+++|++|++++|++++
T Consensus 346 --------~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 346 --------V--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp --------C--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred --------c--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 1 234555666666666666654433 5556666666666666554
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.9e-33 Score=286.66 Aligned_cols=370 Identities=26% Similarity=0.373 Sum_probs=210.8
Q ss_pred ccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccce
Q 040451 103 SHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLIS 182 (566)
Q Consensus 103 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 182 (566)
..+++++.|++.++.+. .+| .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+.+..+ +.++++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hHhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCC-chh-hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 34667888888888776 344 47777888888888888773 443 7778888888888887764333 777777777
Q ss_pred eeccccccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccc
Q 040451 183 FNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLF 262 (566)
Q Consensus 183 L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 262 (566)
|++++|.+.+... +..+++|++|++++|.+.+ ++. ...+++|++|++.. .+... ..+..+++|+.|++++|.+
T Consensus 117 L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 117 LTLFNNQITDIDP-LKNLTNLNRLELSSNTISD-ISA--LSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKV 189 (466)
T ss_dssp EECCSSCCCCCGG-GTTCTTCSEEEEEEEEECC-CGG--GTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCChH-HcCCCCCCEEECCCCccCC-Chh--hccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcC
Confidence 7777777665543 5556666666666655542 221 12455555555532 22211 1144444444444444444
Q ss_pred cccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCcc
Q 040451 263 SGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQIS 342 (566)
Q Consensus 263 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 342 (566)
. .. ..+..+++|++|++++|.+.+..+ +.. .++++.|++++|.+.
T Consensus 190 ~------------------------~~--------~~l~~l~~L~~L~l~~n~l~~~~~--~~~-l~~L~~L~l~~n~l~ 234 (466)
T 1o6v_A 190 S------------------------DI--------SVLAKLTNLESLIATNNQISDITP--LGI-LTNLDELSLNGNQLK 234 (466)
T ss_dssp C------------------------CC--------GGGGGCTTCSEEECCSSCCCCCGG--GGG-CTTCCEEECCSSCCC
T ss_pred C------------------------CC--------hhhccCCCCCEEEecCCccccccc--ccc-cCCCCEEECCCCCcc
Confidence 3 21 123344455555555544432211 000 112222222222222
Q ss_pred CccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCcccc
Q 040451 343 GTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIG 422 (566)
Q Consensus 343 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~ 422 (566)
+. ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|++.+..+ +.
T Consensus 235 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~ 306 (466)
T 1o6v_A 235 DI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--IS 306 (466)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GG
T ss_pred cc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hc
Confidence 11 124445555555555555543322 4455555555555555542221 4445555555555555443221 33
Q ss_pred CCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcE
Q 040451 423 NCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEY 502 (566)
Q Consensus 423 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 502 (566)
.+++| +.|++++|.+.+..+ +..+++|++|++++|.+++. ..+..+++|++
T Consensus 307 ~l~~L-------------------------~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 357 (466)
T 1o6v_A 307 NLKNL-------------------------TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINW 357 (466)
T ss_dssp GCTTC-------------------------SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCE
T ss_pred CCCCC-------------------------CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCE
Confidence 44444 455555555544333 67889999999999999854 46889999999
Q ss_pred EeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCc-------CCCCCCeeeCCCCcCcc
Q 040451 503 LGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLE-------NLSFLSFLNLSYNHFEG 560 (566)
Q Consensus 503 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-------~~~~L~~L~l~~~~l~~ 560 (566)
|++++|++++..| +..+++|+.|++++|++++. |..+. .+..+....+....+++
T Consensus 358 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~-p~~~~~~~~ip~~~~~~~~~~~~~~~is~ 419 (466)
T 1o6v_A 358 LSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA-PVNYKANVSIPNTVKNVTGALIAPATISD 419 (466)
T ss_dssp EECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC-CBCCCSEEEEECCCBCTTSCBCCCSEEST
T ss_pred EeCCCCccCccch--hhcCCCCCEEeccCCcccCC-chhhcccceecccccccCCCeecCceecC
Confidence 9999999997766 88999999999999999853 32221 12344445555555543
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.2e-34 Score=289.77 Aligned_cols=193 Identities=19% Similarity=0.219 Sum_probs=124.7
Q ss_pred cCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCC
Q 040451 74 IPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNL 153 (566)
Q Consensus 74 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l 153 (566)
.+..++++++|++|++++|.+++ .| .+..+++|++|++++|.+++ ++ ++++++|++|++++|.+++ ++ +..+
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l 105 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPL 105 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTC
T ss_pred cccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCC
Confidence 33456778888888888888874 34 67888888888888888874 33 7788888888888888874 33 7788
Q ss_pred CCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEc
Q 040451 154 SALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSI 233 (566)
Q Consensus 154 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 233 (566)
++|++|++++|.+++ ++ +..+++|+.|++++|.+.+. .+..+++|++|++++|...+.++ + ..+++|++|++
T Consensus 106 ~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~~--~-~~l~~L~~L~l 177 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKLD--V-TPQTQLTTLDC 177 (457)
T ss_dssp TTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCCC--C-TTCTTCCEEEC
T ss_pred CcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCCcccccc--c-ccCCcCCEEEC
Confidence 888888888888774 33 67777777887777777654 25556666666666664443432 1 24556666666
Q ss_pred cCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCC
Q 040451 234 SGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGT 288 (566)
Q Consensus 234 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 288 (566)
++|.++.. + +..+++|+.|++++|.+++. .+..+++|+.|++++|.+.+
T Consensus 178 s~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ 226 (457)
T 3bz5_A 178 SFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE 226 (457)
T ss_dssp CSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC
T ss_pred CCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc
Confidence 66655532 2 44555555555555555432 24444455555555544433
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.9e-34 Score=290.94 Aligned_cols=320 Identities=22% Similarity=0.248 Sum_probs=172.7
Q ss_pred cEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCC
Q 040451 204 QYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGE 283 (566)
Q Consensus 204 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 283 (566)
+.++.+++.+. .+|..+ .++++.|++++|.++...+..|..+++|++|++++|.+.+..+..|..+++|+.|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 34555555554 555443 25677777777777766666777777778888877777766677777777777777777
Q ss_pred CcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCc
Q 040451 284 NNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESN 363 (566)
Q Consensus 284 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 363 (566)
|.+...+. ..+..+++|++|++++|.+.+..+..+..+ ++|+.|++++|.+.+..+..|..+++|+.|++++|
T Consensus 90 n~l~~~~~------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 90 NRLKLIPL------GVFTGLSNLTKLDISENKIVILLDYMFQDL-YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp SCCCSCCT------TSSTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC
T ss_pred CcCCccCc------ccccCCCCCCEEECCCCccccCChhHcccc-ccCCEEECCCCccceeChhhccCCCCCCEEECCCC
Confidence 77766554 345667777777777776654433333222 23333333333333333344444555555555555
Q ss_pred cccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccccCch
Q 040451 364 QLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPR 443 (566)
Q Consensus 364 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 443 (566)
.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|...+.++.......+|+.|++++|.++ .++
T Consensus 163 ~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~- 240 (477)
T 2id5_A 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVP- 240 (477)
T ss_dssp CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCC-
T ss_pred cCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccC-
Confidence 554444444455555555555555554444444445555555555554444333333333334555555555444 233
Q ss_pred hhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCC
Q 040451 444 QLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKS 523 (566)
Q Consensus 444 ~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 523 (566)
+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..|..|..+++
T Consensus 241 -----------------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 297 (477)
T 2id5_A 241 -----------------------YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297 (477)
T ss_dssp -----------------------HHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTT
T ss_pred -----------------------HHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCccc
Confidence 233444455555555555554444444445555555555555555444444555555
Q ss_pred CCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCc
Q 040451 524 ITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 559 (566)
Q Consensus 524 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~ 559 (566)
|+.|++++|.++...+..+..+++|++|++++|++.
T Consensus 298 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 555555555554444444444455555555555443
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.1e-33 Score=285.81 Aligned_cols=364 Identities=18% Similarity=0.171 Sum_probs=268.4
Q ss_pred cccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccc
Q 040451 47 GGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEI 126 (566)
Q Consensus 47 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~ 126 (566)
.+..+..++++++|++|++++|.++ .+| .+..+++|++|++++|.+++. + +..+++|++|++++|.+++ ++ +
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~ 102 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSIT-DMT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--V 102 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCC-CCT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--C
T ss_pred CcccccChhHcCCCCEEEccCCCcc-cCh-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--c
Confidence 3344556777888888888888887 455 578888888888888888753 3 7788888888888888874 33 7
Q ss_pred cCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEE
Q 040451 127 GNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYI 206 (566)
Q Consensus 127 ~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L 206 (566)
+++++|++|++++|++++ ++ +..+++|++|++++|.+++. .++.+++|+.|++++|...+.. .+..+++|++|
T Consensus 103 ~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L 175 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL-DVTPQTQLTTL 175 (457)
T ss_dssp TTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEE
T ss_pred CCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc-ccccCCcCCEE
Confidence 888888888888888884 43 77888888888888888753 2777888888888888533322 46677888888
Q ss_pred EcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcC
Q 040451 207 FIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNL 286 (566)
Q Consensus 207 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 286 (566)
++++|.+.+ ++ ...+++|+.|++++|.++.. .+..+++|+.|++++|.+++ .| +..+++|+.|++++|.+
T Consensus 176 ~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 176 DCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp ECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCC
T ss_pred ECCCCccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcC
Confidence 888888874 55 33788999999999988865 37788999999999999886 34 77889999999999988
Q ss_pred CCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCcccc
Q 040451 287 GTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLA 366 (566)
Q Consensus 287 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 366 (566)
.+.+. ..+++|+.|+++++ .++.+++++|...+.+| ++.+++|+.|++++|...
T Consensus 246 ~~~~~---------~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l 299 (457)
T 3bz5_A 246 TELDV---------STLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQL 299 (457)
T ss_dssp SCCCC---------TTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTC
T ss_pred CCcCH---------HHCCCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEEECCCCccc
Confidence 76533 45778888888765 45667777887776665 467888999999888766
Q ss_pred ccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhh
Q 040451 367 GTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLL 446 (566)
Q Consensus 367 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 446 (566)
+.++. ..++|+.|++++| ++|++|++++|++++. .+..+++|+.|++++|++.+ +
T Consensus 300 ~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~-l----- 354 (457)
T 3bz5_A 300 YLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD-F----- 354 (457)
T ss_dssp CEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB-C-----
T ss_pred ceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC-c-----
Confidence 55542 3345555554443 6788888888888863 37788888888888888873 2
Q ss_pred ccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCC
Q 040451 447 HIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTL 494 (566)
Q Consensus 447 ~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 494 (566)
. .+..++++.|.+.+. ..+..|..+++++|.+++.+|..+
T Consensus 355 --~-~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 355 --S-SVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp --T-TGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred --c-ccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence 1 124456677777654 344567777888888877776543
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.9e-33 Score=278.91 Aligned_cols=348 Identities=18% Similarity=0.195 Sum_probs=219.7
Q ss_pred CCCCCCCCCCCC-cccCccCCCCCcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCcc-ccCCCCCCEEeC
Q 040451 12 TSSWNNSINLCQ-WTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHE-VSNLFRLQNLTL 89 (566)
Q Consensus 12 ~~~w~~~~~~c~-w~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~-~~~l~~L~~L~l 89 (566)
..+|....+||. |.+..|... .+.+............-..++++++|+++++.+. .+|.. +..+++|++|++
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~~-----~~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L 76 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVFY-----DVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNL 76 (390)
T ss_dssp ----CCEECBCC------EEEE-----SCEECSSCCCCEESCSSGGGCCCSEEEEESCEES-EECTHHHHHCCCCSEEEC
T ss_pred cCCCCCccceehhhhhhcccee-----eeeeecccccccccccccccCCceEEEecCCchh-hCChhHhcccccCcEEEC
Confidence 467888888885 666666422 1222222222122222345688999999999887 55544 688899999999
Q ss_pred CCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchh-hcCCCCCCEEEeeCCcccc
Q 040451 90 TNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPAS-IGNLSALQEIDVRGNRLGG 168 (566)
Q Consensus 90 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~-l~~l~~L~~L~l~~~~~~~ 168 (566)
++|.++...+..+..+++|++|++++|.+.+..|..++++++|++|++++|.++ .+|.. +..+++|++|++++|.+..
T Consensus 77 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~ 155 (390)
T 3o6n_A 77 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER 155 (390)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCc
Confidence 999988766778899999999999999988777777889999999999999988 44444 5888999999999998887
Q ss_pred cCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCcccccccccccc
Q 040451 169 RIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSN 248 (566)
Q Consensus 169 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 248 (566)
..+..+.++++|+.|++++|.+.... +..+++|++|++++|.+. . +..
T Consensus 156 ~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~-------------------------~-----~~~ 203 (390)
T 3o6n_A 156 IEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS-------------------------T-----LAI 203 (390)
T ss_dssp CCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCS-------------------------E-----EEC
T ss_pred cChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccccc-------------------------c-----cCC
Confidence 76777888888888888888776542 334455555555555443 1 112
Q ss_pred CCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhcc
Q 040451 249 ATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLS 328 (566)
Q Consensus 249 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 328 (566)
.+.|+.|++++|.+..... ...++|+.|++++|.+... ..+..+++|++|++++|.+.+.
T Consensus 204 ~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--------~~l~~l~~L~~L~Ls~n~l~~~--------- 263 (390)
T 3o6n_A 204 PIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--------AWLLNYPGLVEVDLSYNELEKI--------- 263 (390)
T ss_dssp CSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCEE---------
T ss_pred CCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--------HHHcCCCCccEEECCCCcCCCc---------
Confidence 2345555555554442211 1234566666666655432 2345566666666666655432
Q ss_pred ccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 040451 329 ITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLIL 408 (566)
Q Consensus 329 ~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 408 (566)
.+..+..+++|+.|++++|.+++ .+..+..+++|++|++++|++. .+|..+..+++|++|++
T Consensus 264 ----------------~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L 325 (390)
T 3o6n_A 264 ----------------MYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 325 (390)
T ss_dssp ----------------ESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred ----------------ChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEEC
Confidence 23344555666666666666653 2334455666777777777666 44555566667777777
Q ss_pred ccCcceecCCccccCCCCCcEEEccCCcccc
Q 040451 409 EVNNLQGKIPPSIGNCQNLILLTTRKNKLSG 439 (566)
Q Consensus 409 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~ 439 (566)
++|+++.. + +..+++|+.|++++|++..
T Consensus 326 ~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 326 DHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred CCCcccee-C--chhhccCCEEEcCCCCccc
Confidence 77766532 2 5556677777777776654
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.6e-33 Score=284.10 Aligned_cols=318 Identities=18% Similarity=0.167 Sum_probs=218.0
Q ss_pred EEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCc
Q 040451 38 GLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNK 117 (566)
Q Consensus 38 ~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 117 (566)
.++.+++.+. .+|..+. +++++|+|++|.+++..+..|.++++|++|++++|.++...+..|.++++|++|++++|.
T Consensus 15 ~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 4555666665 3454443 589999999999986667789999999999999999987778889999999999999999
Q ss_pred ccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccch-hh
Q 040451 118 LEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMI-PL 196 (566)
Q Consensus 118 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~ 196 (566)
+....+..|.++++|++|++++|.++...+..+..+++|++|++++|.+....+..+.++++|+.|++++|.+...+ ..
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence 88555556889999999999999998777888899999999999999988777788888899999999988887766 45
Q ss_pred hhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCC
Q 040451 197 IYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNL 276 (566)
Q Consensus 197 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 276 (566)
+..+++|+.|++++|.+.+. +...+..+++|++|++++|......+.......+|+.|++++|.+.+..+..+..+++|
T Consensus 172 l~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 250 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAI-RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEE-CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred hcccCCCcEEeCCCCcCcEe-ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence 77778888888888777643 33333366777777777765554444444444566666666666654443445555666
Q ss_pred CEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCC
Q 040451 277 SRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLN 356 (566)
Q Consensus 277 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~ 356 (566)
+.|++++|.+..... ..+..+++|++|++++|.+.+. .+..|..+++|+
T Consensus 251 ~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~~~-------------------------~~~~~~~l~~L~ 299 (477)
T 2id5_A 251 RFLNLSYNPISTIEG------SMLHELLRLQEIQLVGGQLAVV-------------------------EPYAFRGLNYLR 299 (477)
T ss_dssp CEEECCSSCCCEECT------TSCTTCTTCCEEECCSSCCSEE-------------------------CTTTBTTCTTCC
T ss_pred CeeECCCCcCCccCh------hhccccccCCEEECCCCccceE-------------------------CHHHhcCcccCC
Confidence 666666655544333 2334455555555555544422 223344445555
Q ss_pred EEecCCccccccchhhccCCCCCCEEEccCCccc
Q 040451 357 ALGVESNQLAGTIPLAIGELKSLQMLFLNENFLR 390 (566)
Q Consensus 357 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 390 (566)
.|++++|.+++..+..+..+++|++|++++|++.
T Consensus 300 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 300 VLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp EEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred EEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 5555555555444444444555555555555443
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.8e-31 Score=261.66 Aligned_cols=307 Identities=24% Similarity=0.364 Sum_probs=167.9
Q ss_pred CcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCC
Q 040451 54 VGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQ 133 (566)
Q Consensus 54 l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~ 133 (566)
+.++++|++|+++++.+. .++. +..+++|++|++++|.++. .+. +..+++|++|++++|.+++ + ..+.++++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~~-~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQG-IEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCS
T ss_pred chhcccccEEEEeCCccc-cchh-hhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCC
Confidence 345666777777776665 4443 6666777777777776653 222 6666777777777776653 3 2466667777
Q ss_pred EEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcC
Q 040451 134 ILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRF 213 (566)
Q Consensus 134 ~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 213 (566)
+|++++|.++ ..+. +..+++|++|++++|..... +..+..+++|+.|++++|.+..... +..+++|++|++++|.+
T Consensus 114 ~L~l~~n~i~-~~~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l 189 (347)
T 4fmz_A 114 ELYLNEDNIS-DISP-LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQI 189 (347)
T ss_dssp EEECTTSCCC-CCGG-GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCC
T ss_pred EEECcCCccc-Cchh-hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcc
Confidence 7777776666 2333 66666777777766654422 2335666666666666666554433 45555566666655555
Q ss_pred cccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCC
Q 040451 214 HGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTAND 293 (566)
Q Consensus 214 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 293 (566)
.+ ++. ...+++|+.+++++|.+....+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+...
T Consensus 190 ~~-~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~---- 258 (347)
T 4fmz_A 190 ED-ISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI---- 258 (347)
T ss_dssp CC-CGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC----
T ss_pred cc-ccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC----
Confidence 42 221 1245555555555555553322 4455555555555555543322 44555555555555544332
Q ss_pred hhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhc
Q 040451 294 LDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAI 373 (566)
Q Consensus 294 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 373 (566)
..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+++..+..+
T Consensus 259 ----~~~~~l~~L~~L~l~~n~l~~~---------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~l 307 (347)
T 4fmz_A 259 ----NAVKDLTKLKMLNVGSNQISDI---------------------------SVLNNLSQLNSLFLNNNQLGNEDMEVI 307 (347)
T ss_dssp ----GGGTTCTTCCEEECCSSCCCCC---------------------------GGGGGCTTCSEEECCSSCCCGGGHHHH
T ss_pred ----hhHhcCCCcCEEEccCCccCCC---------------------------hhhcCCCCCCEEECcCCcCCCcChhHh
Confidence 1233444555555554443311 124455556666666665555555555
Q ss_pred cCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcce
Q 040451 374 GELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQ 414 (566)
Q Consensus 374 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 414 (566)
..+++|++|++++|++++..| +..+++|++|++++|+++
T Consensus 308 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 308 GGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 555666666666665553333 455555555555555543
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.2e-32 Score=285.11 Aligned_cols=353 Identities=17% Similarity=0.151 Sum_probs=208.3
Q ss_pred CCCCCCCCCCCCCCCC-cccCccCCCCCcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCE
Q 040451 8 PLGVTSSWNNSINLCQ-WTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQN 86 (566)
Q Consensus 8 ~~~~~~~w~~~~~~c~-w~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~ 86 (566)
......+|..+..||. |.++.|..... +++-...... ....-..+++++.++++++.+...-+..+..+++|++
T Consensus 5 ~~~~l~~~~~~~~C~~~~~~~~c~~~~~---~i~~~~~~~~--~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~ 79 (597)
T 3oja_B 5 QRYNVKPRQPEYKCIDSNLQYDCVFYDV---HIDMQTQDVY--FGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 79 (597)
T ss_dssp ------CCCSEECCCCC--CCSEEECSC---EECSSCCCCE--ESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSE
T ss_pred ccccccCCCCCCcCcccCcCceeEecCc---eecccccccc--cCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcE
Confidence 3445678988888884 34444432111 1222111111 1112234678899999988887333344678889999
Q ss_pred EeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcc
Q 040451 87 LTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRL 166 (566)
Q Consensus 87 L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~ 166 (566)
|++++|.+++..+..|..+++|++|++++|.+.+..|..|+++++|++|++++|.++...+..+..+++|++|++++|.+
T Consensus 80 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l 159 (597)
T 3oja_B 80 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 159 (597)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC
Confidence 99999988877777888999999999999988877777788899999999999988844444468888999999999988
Q ss_pred cccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCcccccccccc
Q 040451 167 GGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSL 246 (566)
Q Consensus 167 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 246 (566)
.+..|..+.++++|+.|++++|.+.... +..+++|+.|++++|.+.+ ++ ..+.|+.|++++|.+...
T Consensus 160 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~-l~-----~~~~L~~L~ls~n~l~~~----- 226 (597)
T 3oja_B 160 ERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST-LA-----IPIAVEELDASHNSINVV----- 226 (597)
T ss_dssp CBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSE-EE-----CCTTCSEEECCSSCCCEE-----
T ss_pred CCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccc-cc-----CCchhheeeccCCccccc-----
Confidence 8777777888888888888888776542 3445566666666555441 11 233455555555544422
Q ss_pred ccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhh
Q 040451 247 SNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLAN 326 (566)
Q Consensus 247 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 326 (566)
... ..++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..
T Consensus 227 -------------------~~~---~~~~L~~L~L~~n~l~~~--------~~l~~l~~L~~L~Ls~N~l~~~~------ 270 (597)
T 3oja_B 227 -------------------RGP---VNVELTILKLQHNNLTDT--------AWLLNYPGLVEVDLSYNELEKIM------ 270 (597)
T ss_dssp -------------------ECS---CCSCCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCEEE------
T ss_pred -------------------ccc---cCCCCCEEECCCCCCCCC--------hhhccCCCCCEEECCCCccCCCC------
Confidence 111 113455555555544331 23444555555555555544322
Q ss_pred ccccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeE
Q 040451 327 LSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQL 406 (566)
Q Consensus 327 ~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 406 (566)
|..+..+++|+.|++++|.+++ ++..+..+++|++|++++|.++ .+|..+..+++|+.|
T Consensus 271 -------------------~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L 329 (597)
T 3oja_B 271 -------------------YHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 329 (597)
T ss_dssp -------------------SGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred -------------------HHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEE
Confidence 2334444555555555555543 2333344555555555555555 344444555555555
Q ss_pred ecccCcceecCCccccCCCCCcEEEccCCccc
Q 040451 407 ILEVNNLQGKIPPSIGNCQNLILLTTRKNKLS 438 (566)
Q Consensus 407 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~ 438 (566)
++++|++.+. .+..+++|+.|++++|++.
T Consensus 330 ~L~~N~l~~~---~~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 330 YLDHNSIVTL---KLSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp ECCSSCCCCC---CCCTTCCCSEEECCSSCEE
T ss_pred ECCCCCCCCc---ChhhcCCCCEEEeeCCCCC
Confidence 5555555422 1444555555555555554
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3e-31 Score=264.33 Aligned_cols=308 Identities=17% Similarity=0.152 Sum_probs=235.7
Q ss_pred CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEc
Q 040451 34 QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEA 113 (566)
Q Consensus 34 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 113 (566)
.++++++++++.+....+..+.++++|++|+|++|.+.+..+..+..+++|++|++++|.++...+..+..+++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 67899999999988766666899999999999999999666678999999999999999999777888999999999999
Q ss_pred cCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccc
Q 040451 114 SNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGM 193 (566)
Q Consensus 114 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 193 (566)
++|.++...+..|+++++|++|++++|.++...+..+..+++|++|++++|.++.. .+..+++|+.|++++|.+...
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc
Confidence 99999844444468999999999999999977788899999999999999998754 367789999999999987754
Q ss_pred hhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCC
Q 040451 194 IPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRL 273 (566)
Q Consensus 194 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 273 (566)
...++|++|++++|.+. .++.. ..++|++|++++|.+++. ..+..+++|++|++++|.+.+..+..+..+
T Consensus 202 ----~~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (390)
T 3o6n_A 202 ----AIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271 (390)
T ss_dssp ----ECCSSCSEEECCSSCCC-EEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred ----CCCCcceEEECCCCeee-ecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcccc
Confidence 33468899999998887 33332 357888888888888754 457778888888888888877767777777
Q ss_pred CCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccC
Q 040451 274 QNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLV 353 (566)
Q Consensus 274 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~ 353 (566)
++|+.|++++|.+...+. .+..+++|++|++++|.+. .+|..+..++
T Consensus 272 ~~L~~L~L~~n~l~~~~~-------~~~~l~~L~~L~L~~n~l~--------------------------~~~~~~~~l~ 318 (390)
T 3o6n_A 272 QRLERLYISNNRLVALNL-------YGQPIPTLKVLDLSHNHLL--------------------------HVERNQPQFD 318 (390)
T ss_dssp SSCCEEECCSSCCCEEEC-------SSSCCTTCCEEECCSSCCC--------------------------CCGGGHHHHT
T ss_pred ccCCEEECCCCcCcccCc-------ccCCCCCCCEEECCCCcce--------------------------ecCccccccC
Confidence 777777777777654322 2244566666666666554 2233344555
Q ss_pred CCCEEecCCccccccchhhccCCCCCCEEEccCCccc
Q 040451 354 NLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLR 390 (566)
Q Consensus 354 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 390 (566)
+|+.|++++|.++.. .+..+++|++|++++|++.
T Consensus 319 ~L~~L~L~~N~i~~~---~~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 319 RLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp TCSEEECCSSCCCCC---CCCTTCCCSEEECCSSCEE
T ss_pred cCCEEECCCCcccee---CchhhccCCEEEcCCCCcc
Confidence 666666666655533 2445555666666665554
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.4e-31 Score=258.35 Aligned_cols=307 Identities=26% Similarity=0.355 Sum_probs=213.5
Q ss_pred hhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCC
Q 040451 197 IYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNL 276 (566)
Q Consensus 197 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 276 (566)
+..+++|++|+++++.+. .++. + ..+++|++|++++|.+++..+ +..+++|++|++++|.+.+. ..+..+++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~~-~-~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L 112 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQG-I-EYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNL 112 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCTT-G-GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred chhcccccEEEEeCCccc-cchh-h-hhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence 345567777777777765 3332 2 256777777777777664433 66677777777777766532 246666777
Q ss_pred CEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCC
Q 040451 277 SRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLN 356 (566)
Q Consensus 277 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~ 356 (566)
++|++++|.+.... .+..+++|++|++++|... ... ..+..+++|+
T Consensus 113 ~~L~l~~n~i~~~~--------~~~~l~~L~~L~l~~n~~~-------------------------~~~-~~~~~l~~L~ 158 (347)
T 4fmz_A 113 RELYLNEDNISDIS--------PLANLTKMYSLNLGANHNL-------------------------SDL-SPLSNMTGLN 158 (347)
T ss_dssp SEEECTTSCCCCCG--------GGTTCTTCCEEECTTCTTC-------------------------CCC-GGGTTCTTCC
T ss_pred CEEECcCCcccCch--------hhccCCceeEEECCCCCCc-------------------------ccc-cchhhCCCCc
Confidence 77777776655431 2456666666666666433 122 2356677777
Q ss_pred EEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCc
Q 040451 357 ALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNK 436 (566)
Q Consensus 357 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 436 (566)
.|++++|.+.+..+ +..+++|++|++++|.+.+. +. +..+++|+.+++++|.+.+..+ +..+++|++|++++|.
T Consensus 159 ~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~ 232 (347)
T 4fmz_A 159 YLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNK 232 (347)
T ss_dssp EEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred EEEecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCc
Confidence 77777777664433 66677777777777777633 22 6667777777777777764332 6677777777777777
Q ss_pred ccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCc
Q 040451 437 LSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPS 516 (566)
Q Consensus 437 l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 516 (566)
+.+ .+. +..++.+ +.|++++|.+.+. ..+..+++|++|++++|.+++ + ..+..+++|++|++++|++++..+.
T Consensus 233 l~~-~~~-~~~l~~L-~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~ 305 (347)
T 4fmz_A 233 ITD-LSP-LANLSQL-TWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDME 305 (347)
T ss_dssp CCC-CGG-GTTCTTC-CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHH
T ss_pred cCC-Ccc-hhcCCCC-CEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChh
Confidence 763 333 4444443 7778888777643 458889999999999999984 3 4588999999999999999988888
Q ss_pred CCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCc
Q 040451 517 TLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 559 (566)
Q Consensus 517 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~ 559 (566)
.+..+++|+.|++++|++++..| +..+++|++|++++|+++
T Consensus 306 ~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 306 VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred HhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 89999999999999999997666 788999999999999886
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=2.4e-30 Score=271.72 Aligned_cols=308 Identities=17% Similarity=0.152 Sum_probs=247.9
Q ss_pred CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEc
Q 040451 34 QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEA 113 (566)
Q Consensus 34 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 113 (566)
.+++.++++++.+....+..+.++++|++|+|++|.+.+..+..|+.+++|++|++++|.+++..+..|..+++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 56789999999998776677899999999999999999777778999999999999999999877888999999999999
Q ss_pred cCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccc
Q 040451 114 SNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGM 193 (566)
Q Consensus 114 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 193 (566)
++|.+++..+..|+++++|++|++++|.+++..|..+..+++|++|++++|.+++. .+..+++|+.|++++|.+.+.
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSEE
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccccc
Confidence 99999955455579999999999999999987888899999999999999998854 366789999999999988754
Q ss_pred hhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCC
Q 040451 194 IPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRL 273 (566)
Q Consensus 194 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 273 (566)
...++|+.|++++|.+. .++.. ..++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+..+..+
T Consensus 208 ----~~~~~L~~L~ls~n~l~-~~~~~---~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 277 (597)
T 3oja_B 208 ----AIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277 (597)
T ss_dssp ----ECCTTCSEEECCSSCCC-EEECS---CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred ----cCCchhheeeccCCccc-ccccc---cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence 34568999999999987 33332 347899999999998853 568889999999999999988888888888
Q ss_pred CCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccC
Q 040451 274 QNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLV 353 (566)
Q Consensus 274 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~ 353 (566)
++|+.|++++|.+...+. .+..+++|++|++++|.+. .+|..+..++
T Consensus 278 ~~L~~L~Ls~N~l~~l~~-------~~~~l~~L~~L~Ls~N~l~--------------------------~i~~~~~~l~ 324 (597)
T 3oja_B 278 QRLERLYISNNRLVALNL-------YGQPIPTLKVLDLSHNHLL--------------------------HVERNQPQFD 324 (597)
T ss_dssp SSCCEEECTTSCCCEEEC-------SSSCCTTCCEEECCSSCCC--------------------------CCGGGHHHHT
T ss_pred cCCCEEECCCCCCCCCCc-------ccccCCCCcEEECCCCCCC--------------------------ccCcccccCC
Confidence 888888888888765432 2345677777777777665 2333445566
Q ss_pred CCCEEecCCccccccchhhccCCCCCCEEEccCCccc
Q 040451 354 NLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLR 390 (566)
Q Consensus 354 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 390 (566)
+|+.|++++|.+++. .+..+++|++|++++|++.
T Consensus 325 ~L~~L~L~~N~l~~~---~~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 325 RLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp TCSEEECCSSCCCCC---CCCTTCCCSEEECCSSCEE
T ss_pred CCCEEECCCCCCCCc---ChhhcCCCCEEEeeCCCCC
Confidence 666666666666533 2455566666666666654
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.5e-33 Score=288.01 Aligned_cols=362 Identities=20% Similarity=0.199 Sum_probs=188.0
Q ss_pred CCCCEEecccCcCCCCCchh-hcCCCCCCEEEeeCCcccc----cCcccccccCccceeeccccccccch-hhh-hCCCC
Q 040451 130 LMLQILNIAENHLKGQLPAS-IGNLSALQEIDVRGNRLGG----RIPSTISHVRNLISFNVARNQFSGMI-PLI-YNISS 202 (566)
Q Consensus 130 ~~L~~L~l~~~~i~~~~~~~-l~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l-~~~~~ 202 (566)
++|++|++++++++...... +..+++|++|++++|.+.. .++..+..+++|++|++++|.+.+.. ..+ ..++.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 34566666666655322222 4555666666666666542 12333444555555555555544322 111 11220
Q ss_pred CcEEEcccCcCcccCCccccCCCCCccEEEccCCcccc----ccccccccCCCCceEecccccccccccccc-----cCC
Q 040451 203 LQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTG----SLQDSLSNATNLQGLEINGNLFSGKVSINF-----SRL 273 (566)
Q Consensus 203 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-----~~~ 273 (566)
..++|++|++++|.++. ..+..+..+++|++|++++|.+.+..+..+ ...
T Consensus 83 ---------------------~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 141 (461)
T 1z7x_W 83 ---------------------PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ 141 (461)
T ss_dssp ---------------------TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred ---------------------CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCC
Confidence 01146666666665553 234556666666666666666543333222 224
Q ss_pred CCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhc----cccccEEEccccCccCc----c
Q 040451 274 QNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANL----SITMTEIANGSNQISGT----I 345 (566)
Q Consensus 274 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~l~~l~l~~~~~~~~----~ 345 (566)
++|++|++++|.+...... .+...+..+++|++|++++|.+.+..+..+... .+.+++|++++|.+++. +
T Consensus 142 ~~L~~L~L~~n~l~~~~~~--~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 219 (461)
T 1z7x_W 142 CRLEKLQLEYCSLSAASCE--PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL 219 (461)
T ss_dssp CCCCEEECTTSCCBGGGHH--HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHH
T ss_pred CcceEEECCCCCCCHHHHH--HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHH
Confidence 5677777777766543321 122445566778888888777665544433331 23666666666666542 3
Q ss_pred chhhhccCCCCEEecCCccccccch-----hhccCCCCCCEEEccCCccccc----CCccccCCCCCCeEecccCcceec
Q 040451 346 PDVIANLVNLNALGVESNQLAGTIP-----LAIGELKSLQMLFLNENFLRGT----IPSSLGNLTLLTQLILEVNNLQGK 416 (566)
Q Consensus 346 ~~~l~~l~~L~~L~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~~~ 416 (566)
+..+..+++|++|++++|.+++... ..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+.
T Consensus 220 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 299 (461)
T 1z7x_W 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred HHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH
Confidence 5556667777777777776654321 2223467777777777776643 455555667777777777766543
Q ss_pred CCcccc-----CCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCC
Q 040451 417 IPPSIG-----NCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIP 491 (566)
Q Consensus 417 ~~~~~~-----~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 491 (566)
.+..+. ..++|+.|++++|.+++..... ++..+..+++|++|++++|.+.+..+
T Consensus 300 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~---------------------l~~~l~~~~~L~~L~Ls~n~i~~~~~ 358 (461)
T 1z7x_W 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSH---------------------FSSVLAQNRFLLELQISNNRLEDAGV 358 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH---------------------HHHHHHHCSSCCEEECCSSBCHHHHH
T ss_pred HHHHHHHHhccCCccceeeEcCCCCCchHHHHH---------------------HHHHHhhCCCccEEEccCCccccccH
Confidence 332222 2246666666666665332111 12223344555555555555443222
Q ss_pred cCCcC-----CCCCcEEeCCCCcccc----cCCcCCCCCCCCCEEeCCCCccc
Q 040451 492 TTLGG-----CTSLEYLGMQDNSFTR----SIPSTLSSLKSITELDLSRNNLS 535 (566)
Q Consensus 492 ~~~~~-----~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~n~~~ 535 (566)
..+.. .++|++|++++|.+++ .++..+..+++|+.|++++|+++
T Consensus 359 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 359 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 21211 3455555555555553 33444444555555555555554
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.9e-30 Score=249.63 Aligned_cols=258 Identities=29% Similarity=0.457 Sum_probs=220.1
Q ss_pred CCCCEEEcccCcccc--ccchhHhhccccccEEEccc-cCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCC
Q 040451 304 TKLEVLDLHSNRFGG--VLPFSLANLSITMTEIANGS-NQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQ 380 (566)
Q Consensus 304 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 380 (566)
.++++|+++++.+.+ ..|..+..+ +.++.|++++ |.+.+.+|..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l-~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGC-TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCC-CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 356666666666665 555555554 4666666663 666667788888999999999999999888888899999999
Q ss_pred EEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCC-CCcEEEccCCcccccCchhhhccCCcCcEEEccC
Q 040451 381 MLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQ-NLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSD 459 (566)
Q Consensus 381 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~ 459 (566)
+|++++|.+++..|..+..+++|++|++++|++++.+|..+..++ +|+.|++++|.+.+.+|..+..+. ++.|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~--L~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN--LAFVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC--CSEEECCS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc--ccEEECcC
Confidence 999999999888888999999999999999999988999998888 999999999999888888888776 69999999
Q ss_pred CcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCC
Q 040451 460 NLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIP 539 (566)
Q Consensus 460 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 539 (566)
|.+.+..+..+..+++|+.|++++|.+++..+. +..+++|++|++++|.+++..|..+..+++|+.|++++|++++.+|
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence 999988888999999999999999999865555 8889999999999999998899999999999999999999998888
Q ss_pred ccCcCCCCCCeeeCCCCc-CcccCCCCC
Q 040451 540 QYLENLSFLSFLNLSYNH-FEGKVPIEC 566 (566)
Q Consensus 540 ~~l~~~~~L~~L~l~~~~-l~~~~p~~~ 566 (566)
.. ..+++|+.+++++|+ +.|.-...|
T Consensus 286 ~~-~~l~~L~~l~l~~N~~lc~~p~~~C 312 (313)
T 1ogq_A 286 QG-GNLQRFDVSAYANNKCLCGSPLPAC 312 (313)
T ss_dssp CS-TTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred CC-ccccccChHHhcCCCCccCCCCCCC
Confidence 86 789999999999998 555322345
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.6e-33 Score=287.67 Aligned_cols=382 Identities=15% Similarity=0.116 Sum_probs=220.2
Q ss_pred CcEEEEEcCCCCCcccCcc-cCcCCCCCcEEEcCCCCCcc----ccCccccCCCCCCEEeCCCccCCCCCCccc-ccCC-
Q 040451 34 QRVTGLDLRQQSVGGVLSP-FVGNLSFPRSINLPNKSFRG----EIPHEVSNLFRLQNLTLTNNYFSGKILTDL-SHCS- 106 (566)
Q Consensus 34 ~~v~~l~l~~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~- 106 (566)
.++++|+++++.+.+.... .+..+++|++|+|++|.+.+ .++..+..+++|++|++++|.+++..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 5678888888887654433 36778888888888888774 356667777888888888887764333333 2344
Q ss_pred ---CCCEEEccCCcccc----cCCccccCCCCCCEEecccCcCCCCCchhhc-----CCCCCCEEEeeCCcccccC----
Q 040451 107 ---NVMKFEASNNKLEA----EIPVEIGNLLMLQILNIAENHLKGQLPASIG-----NLSALQEIDVRGNRLGGRI---- 170 (566)
Q Consensus 107 ---~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~---- 170 (566)
+|++|++++|.+++ .++..+.++++|++|++++|.++...+..+. ..++|++|++++|.++...
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 68888888887763 3466677777888888887777643333332 2456777777777766432
Q ss_pred cccccccCccceeeccccccccch-hhhh-----CCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCcccccccc
Q 040451 171 PSTISHVRNLISFNVARNQFSGMI-PLIY-----NISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQD 244 (566)
Q Consensus 171 ~~~l~~l~~L~~L~l~~~~~~~~~-~~l~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 244 (566)
+..+..+++|+.|++++|.+.+.. ..+. ..++|++|++++|.+.+.-.. ..+.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~---------------------~l~~ 221 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR---------------------DLCG 221 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH---------------------HHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH---------------------HHHH
Confidence 334455666777777766655432 1111 233455555555444321000 1233
Q ss_pred ccccCCCCceEecccccccccc-----cccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccc
Q 040451 245 SLSNATNLQGLEINGNLFSGKV-----SINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGV 319 (566)
Q Consensus 245 ~l~~l~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 319 (566)
.+..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+...... .+...+..+++|++|++++|.+.+.
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~--~l~~~l~~~~~L~~L~Ls~n~i~~~ 299 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG--DLCRVLRAKESLKELSLAGNELGDE 299 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH--HHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHH--HHHHHHhhCCCcceEECCCCCCchH
Confidence 3444555555555555544321 11122355566666666655432111 1123344566666666666666544
Q ss_pred cchhHhhc----cccccEEEccccCccCc----cchhhhccCCCCEEecCCccccccchhhccC-----CCCCCEEEccC
Q 040451 320 LPFSLANL----SITMTEIANGSNQISGT----IPDVIANLVNLNALGVESNQLAGTIPLAIGE-----LKSLQMLFLNE 386 (566)
Q Consensus 320 ~~~~~~~~----~~~l~~l~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~ 386 (566)
.+..+... .+++++|++++|.+++. ++..+..+++|+.|++++|.+++..+..+.. .++|++|++++
T Consensus 300 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 379 (461)
T 1z7x_W 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCC
Confidence 43333332 13555555555555543 3445566777788888777776554433322 56777777777
Q ss_pred Ccccc----cCCccccCCCCCCeEecccCcceecCCcccc-----CCCCCcEEEccCCccc
Q 040451 387 NFLRG----TIPSSLGNLTLLTQLILEVNNLQGKIPPSIG-----NCQNLILLTTRKNKLS 438 (566)
Q Consensus 387 ~~~~~----~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-----~~~~L~~L~l~~~~l~ 438 (566)
|.+++ .++..+..+++|++|++++|++++.....+. ....|+.|.+.++...
T Consensus 380 n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 380 CDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp SCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred CCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 77764 4566666777777777777776643221111 1235666666665544
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=9.3e-29 Score=240.38 Aligned_cols=289 Identities=20% Similarity=0.236 Sum_probs=179.9
Q ss_pred CCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEEC
Q 040451 202 SLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNL 281 (566)
Q Consensus 202 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 281 (566)
+++.++++++.+. .+|..+ .+.++.|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 4566666665554 444332 245666666666665554445555666666666666555444555555555555555
Q ss_pred CCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecC
Q 040451 282 GENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVE 361 (566)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~ 361 (566)
++|.+...+.. -.++|++|++++ |.+.+..+..+..+++|+.|+++
T Consensus 108 s~n~l~~l~~~---------~~~~L~~L~l~~-------------------------n~l~~~~~~~~~~l~~L~~L~l~ 153 (330)
T 1xku_A 108 SKNQLKELPEK---------MPKTLQELRVHE-------------------------NEITKVRKSVFNGLNQMIVVELG 153 (330)
T ss_dssp CSSCCSBCCSS---------CCTTCCEEECCS-------------------------SCCCBBCHHHHTTCTTCCEEECC
T ss_pred CCCcCCccChh---------hcccccEEECCC-------------------------CcccccCHhHhcCCccccEEECC
Confidence 55554432210 012333333333 33333334455666677777777
Q ss_pred Cccccc--cchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccc
Q 040451 362 SNQLAG--TIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSG 439 (566)
Q Consensus 362 ~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~ 439 (566)
+|.+.. ..+..+..+++|++|++++|.++ .+|..+. ++|++|++++|++++..+..+..+++|+.|++++|.+
T Consensus 154 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-- 228 (330)
T 1xku_A 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI-- 228 (330)
T ss_dssp SSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCC--
T ss_pred CCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC--
Confidence 766643 34455666666667776666665 3333322 5666666666666655555566666665555555554
Q ss_pred cCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCC
Q 040451 440 TVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLS 519 (566)
Q Consensus 440 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 519 (566)
.+..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|.
T Consensus 229 -----------------------~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 229 -----------------------SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp -----------------------CEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred -----------------------ceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcC
Confidence 4444456788899999999999998 7888899999999999999999976666664
Q ss_pred C------CCCCCEEeCCCCcccc--cCCccCcCCCCCCeeeCCCCc
Q 040451 520 S------LKSITELDLSRNNLSG--HIPQYLENLSFLSFLNLSYNH 557 (566)
Q Consensus 520 ~------l~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~~~ 557 (566)
. .+.|+.|++++|++.. ..|..+..+++++.++|++|+
T Consensus 285 ~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 3 4789999999999863 556788889999999999985
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=5.6e-31 Score=254.69 Aligned_cols=256 Identities=18% Similarity=0.246 Sum_probs=166.8
Q ss_pred ccCCC-CCCCCCCCC----CCCCCCCCcccCccCC--------CCCcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCC
Q 040451 2 KSQLQ-DPLGVTSSW----NNSINLCQWTGVTCGH--------RRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNK 68 (566)
Q Consensus 2 ~~~~~-~~~~~~~~w----~~~~~~c~w~~~~~~~--------~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~ 68 (566)
|+++. ||.+...+| +.+..+|.|.|+.|.. ...+|+.|+++++.+. .+|..++++++|++|+|++|
T Consensus 36 k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n 114 (328)
T 4fcg_A 36 QRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAA 114 (328)
T ss_dssp HHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESS
T ss_pred HHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhhCCCCCEEECCCC
Confidence 44454 777777888 5678899999999842 2257888888888877 56777777888888888888
Q ss_pred CCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccC---------CCCCCEEeccc
Q 040451 69 SFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGN---------LLMLQILNIAE 139 (566)
Q Consensus 69 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~---------l~~L~~L~l~~ 139 (566)
.+. .+|..++++++|++|++++|.++ .+|..+..+++|++|++++|...+.+|..++. +++|++|++++
T Consensus 115 ~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~ 192 (328)
T 4fcg_A 115 GLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW 192 (328)
T ss_dssp CCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEE
T ss_pred Ccc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcC
Confidence 877 77777777788888888888777 66777777777777777777666666665543 55555555555
Q ss_pred CcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCcccCCc
Q 040451 140 NHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPL 219 (566)
Q Consensus 140 ~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 219 (566)
|+++ .+|..+..+++|++|++++|.+. +.+..+..+++|++|++++|.+.+.+|.
T Consensus 193 n~l~-~lp~~l~~l~~L~~L~L~~N~l~------------------------~l~~~l~~l~~L~~L~Ls~n~~~~~~p~ 247 (328)
T 4fcg_A 193 TGIR-SLPASIANLQNLKSLKIRNSPLS------------------------ALGPAIHHLPKLEELDLRGCTALRNYPP 247 (328)
T ss_dssp ECCC-CCCGGGGGCTTCCEEEEESSCCC------------------------CCCGGGGGCTTCCEEECTTCTTCCBCCC
T ss_pred CCcC-cchHhhcCCCCCCEEEccCCCCC------------------------cCchhhccCCCCCEEECcCCcchhhhHH
Confidence 5555 44545555555555555555544 4434444455555555555555545554
Q ss_pred cccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcC
Q 040451 220 DNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNL 286 (566)
Q Consensus 220 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 286 (566)
.+. .+++|++|++++|.+....|..+..+++|+.|++++|.+.+..|..+..+++++.+.+..+.+
T Consensus 248 ~~~-~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 248 IFG-GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CTT-CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred Hhc-CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 443 566666666666665555665666666666666666666666666666666666666665443
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.5e-29 Score=244.47 Aligned_cols=288 Identities=21% Similarity=0.251 Sum_probs=184.3
Q ss_pred CCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEEC
Q 040451 202 SLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNL 281 (566)
Q Consensus 202 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 281 (566)
+++.++++++.+. .+|..+ .++++.|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4556666655554 444433 245566666666555444445555556666666655555444555555555555555
Q ss_pred CCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecC
Q 040451 282 GENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVE 361 (566)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~ 361 (566)
++|.+...+.. + .++|++|+++ +|.+.+..+..+..+++|+.|+++
T Consensus 110 ~~n~l~~l~~~-------~--~~~L~~L~l~-------------------------~n~i~~~~~~~~~~l~~L~~L~l~ 155 (332)
T 2ft3_A 110 SKNHLVEIPPN-------L--PSSLVELRIH-------------------------DNRIRKVPKGVFSGLRNMNCIEMG 155 (332)
T ss_dssp CSSCCCSCCSS-------C--CTTCCEEECC-------------------------SSCCCCCCSGGGSSCSSCCEEECC
T ss_pred CCCcCCccCcc-------c--cccCCEEECC-------------------------CCccCccCHhHhCCCccCCEEECC
Confidence 55554432220 0 0334444444 333433334456677777777777
Q ss_pred Cccccc--cchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccc
Q 040451 362 SNQLAG--TIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSG 439 (566)
Q Consensus 362 ~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~ 439 (566)
+|.++. ..+..+..+ +|++|++++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 156 ~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~- 230 (332)
T 2ft3_A 156 GNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR- 230 (332)
T ss_dssp SCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC-
T ss_pred CCccccCCCCcccccCC-ccCEEECcCCCCC-ccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC-
Confidence 777753 445555555 7777777777776 3444332 57777777777776555566666666666666666554
Q ss_pred cCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCC
Q 040451 440 TVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLS 519 (566)
Q Consensus 440 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 519 (566)
+..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|.
T Consensus 231 ------------------------~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 231 ------------------------MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285 (332)
T ss_dssp ------------------------CCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred ------------------------cCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence 344456778889999999999998 7888889999999999999999976666665
Q ss_pred C------CCCCCEEeCCCCccc--ccCCccCcCCCCCCeeeCCCCc
Q 040451 520 S------LKSITELDLSRNNLS--GHIPQYLENLSFLSFLNLSYNH 557 (566)
Q Consensus 520 ~------l~~L~~L~l~~n~~~--~~~~~~l~~~~~L~~L~l~~~~ 557 (566)
. .+.|+.|++++|++. +..|..+..+++|+.+++++|+
T Consensus 286 ~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 4 367999999999987 5677888899999999999985
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.1e-28 Score=239.96 Aligned_cols=294 Identities=18% Similarity=0.186 Sum_probs=159.1
Q ss_pred EEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccC
Q 040451 36 VTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASN 115 (566)
Q Consensus 36 v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 115 (566)
++.++++++.+.. +|..+. +++++|+|++|.+++..+..+.++++|++|++++|.++...|..+..+++|++|++++
T Consensus 33 l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 33 LRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp TTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 3445555555542 333222 4566666666666543444556666666666666666544455566666666666666
Q ss_pred CcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccc--cCcccccccCccceeeccccccccc
Q 040451 116 NKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGG--RIPSTISHVRNLISFNVARNQFSGM 193 (566)
Q Consensus 116 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~ 193 (566)
|.++ .+|..+. ++|++|++++|.++...+..+..+++|++|++++|.+.. ..+..+.++++|+.|+++
T Consensus 110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~------- 179 (330)
T 1xku_A 110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA------- 179 (330)
T ss_dssp SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC-------
T ss_pred CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC-------
Confidence 6555 3444333 456666666665554444445555666666666555532 333444444555555444
Q ss_pred hhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCC
Q 040451 194 IPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRL 273 (566)
Q Consensus 194 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 273 (566)
+|.+. .+|... .++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+
T Consensus 180 ----------------~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 239 (330)
T 1xku_A 180 ----------------DTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 239 (330)
T ss_dssp ----------------SSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred ----------------CCccc-cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence 44444 333332 2566666666666665555666666666667776666665555556666
Q ss_pred CCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccC
Q 040451 274 QNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLV 353 (566)
Q Consensus 274 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~ 353 (566)
++|+.|++++|.+...+. .+..+++|++|++++|.+++..+..+... .......
T Consensus 240 ~~L~~L~L~~N~l~~lp~-------~l~~l~~L~~L~l~~N~i~~~~~~~f~~~-------------------~~~~~~~ 293 (330)
T 1xku_A 240 PHLRELHLNNNKLVKVPG-------GLADHKYIQVVYLHNNNISAIGSNDFCPP-------------------GYNTKKA 293 (330)
T ss_dssp TTCCEEECCSSCCSSCCT-------TTTTCSSCCEEECCSSCCCCCCTTSSSCS-------------------SCCTTSC
T ss_pred CCCCEEECCCCcCccCCh-------hhccCCCcCEEECCCCcCCccChhhcCCc-------------------ccccccc
Confidence 667777777666653322 34556677777777766664433322111 0011234
Q ss_pred CCCEEecCCccccc--cchhhccCCCCCCEEEccCCc
Q 040451 354 NLNALGVESNQLAG--TIPLAIGELKSLQMLFLNENF 388 (566)
Q Consensus 354 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~ 388 (566)
.++.+++++|.+.. ..+..+..+.+++.+++++|+
T Consensus 294 ~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 294 SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccceEeecCcccccccCccccccccceeEEEecccC
Confidence 56666666665542 344556666667777766653
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=4.6e-29 Score=242.65 Aligned_cols=293 Identities=20% Similarity=0.238 Sum_probs=162.0
Q ss_pred CCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecc
Q 040451 59 FPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIA 138 (566)
Q Consensus 59 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~ 138 (566)
+++.++++++.++ .+|..+. +++++|++++|.++...+..+..+++|++|++++|.+++..|..|+++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 3455555555544 4444332 355555555555554444445555555555555555554444555555555555555
Q ss_pred cCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccc--h-hhhhCCCCCcEEEcccCcCcc
Q 040451 139 ENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGM--I-PLIYNISSLQYIFIHTNRFHG 215 (566)
Q Consensus 139 ~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~-~~l~~~~~L~~L~l~~~~~~~ 215 (566)
+|.++ .+|..+. ++|++|++++|.+....+..+.++++|+.|++++|.+... . ..+..+ +|++|++++|.+.
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~- 185 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT- 185 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-
Confidence 55555 3443333 4555555555555543334455555555555555555321 1 223333 5566666666555
Q ss_pred cCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCChh
Q 040451 216 SLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLD 295 (566)
Q Consensus 216 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 295 (566)
.+|..+. ++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+...+.
T Consensus 186 ~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~---- 258 (332)
T 2ft3_A 186 GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA---- 258 (332)
T ss_dssp SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCT----
T ss_pred ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecCh----
Confidence 3444322 567777777777776666667777777777777777776666667777777777777777664332
Q ss_pred hhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCcccc--ccchhhc
Q 040451 296 FITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLA--GTIPLAI 373 (566)
Q Consensus 296 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~ 373 (566)
.+..+++|++|++++|.+++..+..+.... .-.....|+.+++.+|.+. +..+..+
T Consensus 259 ---~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~-------------------~~~~~~~l~~L~l~~N~~~~~~~~~~~~ 316 (332)
T 2ft3_A 259 ---GLPDLKLLQVVYLHTNNITKVGVNDFCPVG-------------------FGVKRAYYNGISLFNNPVPYWEVQPATF 316 (332)
T ss_dssp ---TGGGCTTCCEEECCSSCCCBCCTTSSSCSS-------------------CCSSSCCBSEEECCSSSSCGGGSCGGGG
T ss_pred ---hhhcCccCCEEECCCCCCCccChhHccccc-------------------cccccccccceEeecCcccccccCcccc
Confidence 355677777777777777654433322210 0011345666777776655 3455566
Q ss_pred cCCCCCCEEEccCCc
Q 040451 374 GELKSLQMLFLNENF 388 (566)
Q Consensus 374 ~~~~~L~~L~l~~~~ 388 (566)
..+++|+.+++++|+
T Consensus 317 ~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 317 RCVTDRLAIQFGNYK 331 (332)
T ss_dssp TTBCCSTTEEC----
T ss_pred cccchhhhhhccccc
Confidence 667777777776653
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=4.6e-32 Score=286.02 Aligned_cols=454 Identities=13% Similarity=0.081 Sum_probs=248.1
Q ss_pred CCCCCCcccCccCCCCCcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCc---cccCccc------------cCCC
Q 040451 18 SINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFR---GEIPHEV------------SNLF 82 (566)
Q Consensus 18 ~~~~c~w~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~---~~~~~~~------------~~l~ 82 (566)
+..|++|.++.+.. -+.+.+.. ......+..+.++++|++|+|+++... +.+|..+ ..++
T Consensus 38 s~vck~W~~~~~~~----~~~l~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 112 (592)
T 3ogk_B 38 SLVCRRWFKIDSET----REHVTMAL-CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLR 112 (592)
T ss_dssp TTSCHHHHHHHHHH----CCEEEESC-GGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCT
T ss_pred HHHhHHHHHhhhcc----ccEEEEee-ccccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCC
Confidence 44566999886532 23344432 233334556688999999999876432 1222222 2677
Q ss_pred CCCEEeCCCccCCCCCCccccc-CCC-CCEEEccCCcc-cc-cCCccccCCCCCCEEecccCcCCCC----CchhhcCCC
Q 040451 83 RLQNLTLTNNYFSGKILTDLSH-CSN-VMKFEASNNKL-EA-EIPVEIGNLLMLQILNIAENHLKGQ----LPASIGNLS 154 (566)
Q Consensus 83 ~L~~L~l~~~~~~~~~~~~~~~-l~~-L~~L~L~~~~~-~~-~~~~~~~~l~~L~~L~l~~~~i~~~----~~~~l~~l~ 154 (566)
+|++|++++|.+++..+..+.. +++ |++|++++|.. .. .++....++++|++|++++|.+++. ++.....++
T Consensus 113 ~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~ 192 (592)
T 3ogk_B 113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT 192 (592)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCC
T ss_pred CCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCC
Confidence 8888888888776554555544 344 88888887762 11 1222234677888888888876644 233445677
Q ss_pred CCCEEEeeCCcccc----cCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCc---ccCCccccCCCCC
Q 040451 155 ALQEIDVRGNRLGG----RIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFH---GSLPLDNGVNLPN 227 (566)
Q Consensus 155 ~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~~ 227 (566)
+|++|++++|.+.+ .++..+.++++|+.|++++|.+.+.+..+..+++|++|+++..... ......+ ..+++
T Consensus 193 ~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~~~~ 271 (592)
T 3ogk_B 193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL-VFPRK 271 (592)
T ss_dssp CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC-CCCTT
T ss_pred CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHh-hcccc
Confidence 88888888777652 3333445677888888888777776666777777887777653221 1111122 24556
Q ss_pred ccEEEccCCccccccccccccCCCCceEeccccccccccc-ccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCC
Q 040451 228 LRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVS-INFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKL 306 (566)
Q Consensus 228 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L 306 (566)
|+.++++++... ..+..+..+++|++|++++|.+.+... ..+..+++|+.|++++ .+.. ..+......+++|
T Consensus 272 L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~-----~~l~~~~~~~~~L 344 (592)
T 3ogk_B 272 LCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGD-----RGLEVLAQYCKQL 344 (592)
T ss_dssp CCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHH-----HHHHHHHHHCTTC
T ss_pred ccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCH-----HHHHHHHHhCCCC
Confidence 666666554322 334445555566666666655432222 1134455555555552 1111 1111222344555
Q ss_pred CEEEccc-----------CccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccC
Q 040451 307 EVLDLHS-----------NRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGE 375 (566)
Q Consensus 307 ~~L~l~~-----------~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 375 (566)
++|++++ +.+++.... .....+++|+.|++..+.+++.....+..
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~------------------------~l~~~~~~L~~L~l~~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLI------------------------ALAQGCQELEYMAVYVSDITNESLESIGT 400 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHH------------------------HHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred CEEEeecCccccccccccCccCHHHHH------------------------HHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence 5555552 222222111 22334566666666555555444444433
Q ss_pred -CCCCCEEEcc----CCccccc-----CCccccCCCCCCeEecccCc--ceecCCccc-cCCCCCcEEEccCCcccccCc
Q 040451 376 -LKSLQMLFLN----ENFLRGT-----IPSSLGNLTLLTQLILEVNN--LQGKIPPSI-GNCQNLILLTTRKNKLSGTVP 442 (566)
Q Consensus 376 -~~~L~~L~l~----~~~~~~~-----~~~~~~~l~~L~~L~l~~~~--l~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~ 442 (566)
+++|++|+++ .+.+++. ++..+..+++|++|+++.|. +++..+..+ ..+++|++|++++|.+++...
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 480 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL 480 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH
T ss_pred hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH
Confidence 5666666664 3344421 22234456666666665433 333322222 236667777777666654333
Q ss_pred hhhhccCCcCcEEEccCCcceecC-CccccCCCCCCEEEccCCcccccCCcCC-cCCCCCcEEeCCCC
Q 040451 443 RQLLHIITLPVLLDLSDNLLNGHF-PAEVGNLKNLVSLDISSNMFSGEIPTTL-GGCTSLEYLGMQDN 508 (566)
Q Consensus 443 ~~~~~~~~~l~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~ 508 (566)
..+....+.++.|++++|.+++.. +..+..+++|++|++++|.++......+ ..++.+....+..+
T Consensus 481 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 481 MEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 333232333467777777654332 2234567888899999888875433323 45677766666554
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=5.2e-30 Score=270.33 Aligned_cols=230 Identities=12% Similarity=0.033 Sum_probs=121.7
Q ss_pred CCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCC-----------ccccccch
Q 040451 302 NCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVES-----------NQLAGTIP 370 (566)
Q Consensus 302 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~-----------~~~~~~~~ 370 (566)
.+++|++|++++|.+++.....+....++++.|++.++...+.++.....+++|++|++++ +.+++...
T Consensus 291 ~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~ 370 (592)
T 3ogk_B 291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL 370 (592)
T ss_dssp GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHH
T ss_pred hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHH
Confidence 3444555555444433222222122223444444442211122333345667777777773 34443322
Q ss_pred -hhccCCCCCCEEEccCCcccccCCccccC-CCCCCeEecc----cCcceec-----CCccccCCCCCcEEEccCCc--c
Q 040451 371 -LAIGELKSLQMLFLNENFLRGTIPSSLGN-LTLLTQLILE----VNNLQGK-----IPPSIGNCQNLILLTTRKNK--L 437 (566)
Q Consensus 371 -~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~----~~~l~~~-----~~~~~~~~~~L~~L~l~~~~--l 437 (566)
.....+++|++|+++.+.+++..+..+.. +++|+.|+++ .+.+++. ++..+..+++|+.|+++.|. +
T Consensus 371 ~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l 450 (592)
T 3ogk_B 371 IALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGL 450 (592)
T ss_dssp HHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGC
T ss_pred HHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCc
Confidence 22345778888888777776655555554 7788888886 3445432 22235567778888776543 5
Q ss_pred cccCchhhhccCCcCcEEEccCCcceec-CCccccCCCCCCEEEccCCccccc-CCcCCcCCCCCcEEeCCCCcccccCC
Q 040451 438 SGTVPRQLLHIITLPVLLDLSDNLLNGH-FPAEVGNLKNLVSLDISSNMFSGE-IPTTLGGCTSLEYLGMQDNSFTRSIP 515 (566)
Q Consensus 438 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~ 515 (566)
++.....+....+.++.|++++|.+++. .+..+..+++|++|++++|.+++. ++..+..+++|++|++++|++++...
T Consensus 451 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~ 530 (592)
T 3ogk_B 451 TDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQ 530 (592)
T ss_dssp CHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCT
T ss_pred cHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHH
Confidence 5444445554444457777777766542 222345667777777777776533 22333456677777777777665433
Q ss_pred cCC-CCCCCCCEEeCCC
Q 040451 516 STL-SSLKSITELDLSR 531 (566)
Q Consensus 516 ~~l-~~l~~L~~L~l~~ 531 (566)
..+ ..+|.+....+..
T Consensus 531 ~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 531 DLMQMARPYWNIELIPS 547 (592)
T ss_dssp TGGGGCCTTEEEEEECC
T ss_pred HHHHHhCCCcEEEEecC
Confidence 322 2345554444443
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=4.6e-29 Score=241.27 Aligned_cols=284 Identities=15% Similarity=0.200 Sum_probs=197.1
Q ss_pred cCCCCCCCCCCCCCC--CCCCCCcccCccCCCCCcEEEEEcCCCCCcccC----ccc--CcCCCCCcEEEcCCCCCcccc
Q 040451 3 SQLQDPLGVTSSWNN--SINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVL----SPF--VGNLSFPRSINLPNKSFRGEI 74 (566)
Q Consensus 3 ~~~~~~~~~~~~w~~--~~~~c~w~~~~~~~~~~~v~~l~l~~~~~~~~~----~~~--l~~l~~L~~L~L~~~~~~~~~ 74 (566)
.++.|+..+++.|++ ..++|.|.+.-|..... .-..+.+.|.. +.. -...+++++|+|++|.+. .+
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~-----~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~l 96 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN-----NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QF 96 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTT-----CTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SC
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhhhcccccc-----cccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hc
Confidence 345577778888976 34788887655521101 01112222211 111 123456666666666665 56
Q ss_pred CccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCC
Q 040451 75 PHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLS 154 (566)
Q Consensus 75 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~ 154 (566)
|..+.++++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..++++++|++|++++|++.+.+|..+..
T Consensus 97 p~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~-- 172 (328)
T 4fcg_A 97 PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS-- 172 (328)
T ss_dssp CSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE--
T ss_pred ChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhh--
Confidence 655666666666666666665 45555555666666666666555 45555555555555555555544444443322
Q ss_pred CCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEcc
Q 040451 155 ALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSIS 234 (566)
Q Consensus 155 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 234 (566)
. ..+..+.++++|+.|++++|.+...+..+..+++|++|++++|.+. .++..+. .+++|++|+++
T Consensus 173 ----~---------~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~-~l~~L~~L~Ls 237 (328)
T 4fcg_A 173 ----T---------DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIH-HLPKLEELDLR 237 (328)
T ss_dssp ----E---------C-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGG-GCTTCCEEECT
T ss_pred ----c---------cchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhhc-cCCCCCEEECc
Confidence 0 1112345588888888888888877777888999999999999998 5666655 89999999999
Q ss_pred CCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccC
Q 040451 235 GNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSN 314 (566)
Q Consensus 235 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 314 (566)
+|.+....|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+ ..+..+++++.+.+..+
T Consensus 238 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP------~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP------SLIAQLPANCIILVPPH 311 (328)
T ss_dssp TCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC------GGGGGSCTTCEEECCGG
T ss_pred CCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc------HHHhhccCceEEeCCHH
Confidence 999988889999999999999999999988999999999999999999999887777 67889999999999987
Q ss_pred ccc
Q 040451 315 RFG 317 (566)
Q Consensus 315 ~~~ 317 (566)
.+.
T Consensus 312 ~~~ 314 (328)
T 4fcg_A 312 LQA 314 (328)
T ss_dssp GSC
T ss_pred HHH
Confidence 654
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=4e-27 Score=231.04 Aligned_cols=284 Identities=15% Similarity=0.153 Sum_probs=181.7
Q ss_pred CCCCCCCCCcccCccCCCCCcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccC
Q 040451 15 WNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYF 94 (566)
Q Consensus 15 w~~~~~~c~w~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 94 (566)
|......|.|.++ ++.+++.++. +|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+
T Consensus 23 ~~~~~~~C~~~~~-----------c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 88 (353)
T 2z80_A 23 SNQASLSCDRNGI-----------CKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI 88 (353)
T ss_dssp ----CCEECTTSE-----------EECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred CCccCCCCCCCeE-----------eeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc
Confidence 4455566777653 4555666653 444333 4677777777777644444677777777777777777
Q ss_pred CCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCch--hhcCCCCCCEEEeeCC-cccccCc
Q 040451 95 SGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPA--SIGNLSALQEIDVRGN-RLGGRIP 171 (566)
Q Consensus 95 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~--~l~~l~~L~~L~l~~~-~~~~~~~ 171 (566)
++..+..+..+++|++|++++|.+++..+..++++++|++|++++|+++ .++. .+..+++|++|++++| .+....+
T Consensus 89 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 167 (353)
T 2z80_A 89 NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQR 167 (353)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred CccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCH
Confidence 6555666777777777777777776433334677777777777777776 3443 5667777777777776 3554555
Q ss_pred ccccccCccceeeccccccccch-hhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCcccccccccc---c
Q 040451 172 STISHVRNLISFNVARNQFSGMI-PLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSL---S 247 (566)
Q Consensus 172 ~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~ 247 (566)
..+.++++|+.|++++|.+.+.. ..+..+++|++|++++|.+. .++..++..+++|++|++++|.++...+..+ .
T Consensus 168 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~ 246 (353)
T 2z80_A 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246 (353)
T ss_dssp TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------
T ss_pred HHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccccccccccccc
Confidence 66777777777777777766653 56666777777777777764 4444443346777777777777665433322 2
Q ss_pred cCCCCceEecccccccc----cccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCcccccc
Q 040451 248 NATNLQGLEINGNLFSG----KVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVL 320 (566)
Q Consensus 248 ~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 320 (566)
..+.++.++++++.+.+ ..+..+..+++|+.|++++|.+...+. ..+..+++|++|++++|++....
T Consensus 247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~------~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD------GIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCBCCCH
T ss_pred ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH------HHHhcCCCCCEEEeeCCCccCcC
Confidence 34556667777666543 234556777888888888888775544 33567788888888888877543
No 54
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=7.2e-30 Score=269.40 Aligned_cols=462 Identities=15% Similarity=0.124 Sum_probs=229.5
Q ss_pred CCCCCCcccCccCCCCCcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCcccc---C------------ccccCCC
Q 040451 18 SINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEI---P------------HEVSNLF 82 (566)
Q Consensus 18 ~~~~c~w~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~---~------------~~~~~l~ 82 (566)
+..|++|.++.. ...+.++++..... .....+.++++|++|+++++.....+ | .....++
T Consensus 31 s~vck~W~~~~~----~~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~ 105 (594)
T 2p1m_B 31 SLVCKSWYEIER----WCRRKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYT 105 (594)
T ss_dssp HTSCHHHHHHHH----HHCCEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCT
T ss_pred HHHHHHHHHhhh----hhceEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCC
Confidence 345678988732 33456666654322 22345678889999999887532221 1 1123566
Q ss_pred CCCEEeCCCccCCCCCCcccc-cCCCCCEEEccCC-ccccc-CCccccCCCCCCEEecccCcCCCCCchhh----cCCCC
Q 040451 83 RLQNLTLTNNYFSGKILTDLS-HCSNVMKFEASNN-KLEAE-IPVEIGNLLMLQILNIAENHLKGQLPASI----GNLSA 155 (566)
Q Consensus 83 ~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~~-~~~~~-~~~~~~~l~~L~~L~l~~~~i~~~~~~~l----~~l~~ 155 (566)
+|++|++++|.+++..+..+. .+++|++|++++| .+.+. ++..+.++++|++|++++|.+++..+..+ ..+++
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~ 185 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS 185 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCC
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCc
Confidence 777777777766654444444 5677777777776 33321 23333466677777777766554333333 24556
Q ss_pred CCEEEeeCCc--ccc-cCcccccccCccceeecccc-ccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEE
Q 040451 156 LQEIDVRGNR--LGG-RIPSTISHVRNLISFNVARN-QFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYF 231 (566)
Q Consensus 156 L~~L~l~~~~--~~~-~~~~~l~~l~~L~~L~l~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 231 (566)
|++|++++|. +.. .+...+..+++|+.|++++| .+.+....+..+++|++|++..+...
T Consensus 186 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~----------------- 248 (594)
T 2p1m_B 186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE----------------- 248 (594)
T ss_dssp CCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCC-----------------
T ss_pred CcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCc-----------------
Confidence 7777776664 111 11111234466666666665 23333344555666666654433210
Q ss_pred EccCCccccccccccccCCCCceE-ecccccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEE
Q 040451 232 SISGNNLTGSLQDSLSNATNLQGL-EINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLD 310 (566)
Q Consensus 232 ~l~~~~~~~~~~~~l~~l~~L~~L-~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 310 (566)
+..+.+.. .+..+.++++|+.+ .+.+... +..+..+..+++|+.|++++|.+... .....+..+++|++|+
T Consensus 249 -~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~-----~l~~~~~~~~~L~~L~ 320 (594)
T 2p1m_B 249 -VRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSY-----DLVKLLCQCPKLQRLW 320 (594)
T ss_dssp -CCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHH-----HHHHHHTTCTTCCEEE
T ss_pred -cchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHH-----HHHHHHhcCCCcCEEe
Confidence 00111111 11233444444444 2221111 11222222344555555555443211 1112234455555555
Q ss_pred cccCccccccchhHhhccccccEEEccc---------cCccCccchhh-hccCCCCEEecCCccccccchhhcc-CCCCC
Q 040451 311 LHSNRFGGVLPFSLANLSITMTEIANGS---------NQISGTIPDVI-ANLVNLNALGVESNQLAGTIPLAIG-ELKSL 379 (566)
Q Consensus 311 l~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L 379 (566)
+++| +.+.....+....++|++|++.+ +.+++.....+ ..+++|+.|.+..+.+++.....+. .+++|
T Consensus 321 l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L 399 (594)
T 2p1m_B 321 VLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNM 399 (594)
T ss_dssp EEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTC
T ss_pred CcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCc
Confidence 5554 32222222222234555555522 22222211122 2366666666666666544444443 36667
Q ss_pred CEEEcc--C----Ccccc-----cCCccccCCCCCCeEecccCcceecCCccccC-CCCCcEEEccCCcccccCchhhhc
Q 040451 380 QMLFLN--E----NFLRG-----TIPSSLGNLTLLTQLILEVNNLQGKIPPSIGN-CQNLILLTTRKNKLSGTVPRQLLH 447 (566)
Q Consensus 380 ~~L~l~--~----~~~~~-----~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~~~ 447 (566)
++|+++ + +.+++ .++..+..+++|++|++++ .+++..+..+.. +++|+.|++++|.+++.....+..
T Consensus 400 ~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~ 478 (594)
T 2p1m_B 400 TRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLS 478 (594)
T ss_dssp CEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHH
T ss_pred ceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHh
Confidence 777776 2 33331 1112245566777777765 444333333333 667777777777765544444433
Q ss_pred cCCcCcEEEccCCcceecCCc-cccCCCCCCEEEccCCcccccCCcCC-cCCCCCcEEeCCCCccc
Q 040451 448 IITLPVLLDLSDNLLNGHFPA-EVGNLKNLVSLDISSNMFSGEIPTTL-GGCTSLEYLGMQDNSFT 511 (566)
Q Consensus 448 ~~~~l~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~ 511 (566)
..+.++.|++++|.+++.... ....+++|+.|++++|+++......+ ..++.|+...+..+...
T Consensus 479 ~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~ 544 (594)
T 2p1m_B 479 GCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAP 544 (594)
T ss_dssp HCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCG
T ss_pred cCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcc
Confidence 333447777777776433222 23456788888888887754333333 45677766666555433
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=2.3e-26 Score=221.00 Aligned_cols=248 Identities=22% Similarity=0.230 Sum_probs=122.8
Q ss_pred CEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCc--cchhhhccCC
Q 040451 277 SRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGT--IPDVIANLVN 354 (566)
Q Consensus 277 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~--~~~~l~~l~~ 354 (566)
+.++++++.+...+.. -.+++++|++++|.+....+..+..+ ++++.|++++|.+... .+..+..+++
T Consensus 10 ~~l~c~~~~l~~ip~~---------~~~~l~~L~L~~n~l~~i~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 79 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTG---------IPSSATRLELESNKLQSLPHGVFDKL-TQLTKLSLSSNGLSFKGCCSQSDFGTTS 79 (306)
T ss_dssp TEEECCSSCCSSCCSC---------CCTTCCEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCEEEEEEHHHHSCSC
T ss_pred CEEEcCCCCcccCCCC---------CCCCCCEEECCCCccCccCHhHhhcc-ccCCEEECCCCccCcccCcccccccccc
Confidence 4566666665554331 12467777777776653333223332 3555555555554421 2334444555
Q ss_pred CCEEecCCccccccchhhccCCCCCCEEEccCCcccccCC-ccccCCCCCCeEecccCcceecCCccccCCCCCcEEEcc
Q 040451 355 LNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIP-SSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTR 433 (566)
Q Consensus 355 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 433 (566)
|+.|++++|.+.. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 80 L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 158 (306)
T 2z66_A 80 LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158 (306)
T ss_dssp CCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT
T ss_pred cCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECC
Confidence 5555555555542 23334455555555555555543222 344455555555555555554444445555555555555
Q ss_pred CCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCccccc
Q 040451 434 KNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRS 513 (566)
Q Consensus 434 ~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 513 (566)
+|.+.+. ..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 159 ~n~l~~~------------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 214 (306)
T 2z66_A 159 GNSFQEN------------------------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214 (306)
T ss_dssp TCEEGGG------------------------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC
T ss_pred CCccccc------------------------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCcc
Confidence 5554431 2334444555555555555555544444455555555555555555543
Q ss_pred CCcCCCCCCCCCEEeCCCCcccccCCccCcCCC-CCCeeeCCCCcCc
Q 040451 514 IPSTLSSLKSITELDLSRNNLSGHIPQYLENLS-FLSFLNLSYNHFE 559 (566)
Q Consensus 514 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~-~L~~L~l~~~~l~ 559 (566)
.+..+..+++|+.|++++|++++..+..+..++ +|+.|++++|++.
T Consensus 215 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 215 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred ChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 333444455555555555555544444444442 4555555555544
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=5.4e-26 Score=218.42 Aligned_cols=226 Identities=18% Similarity=0.213 Sum_probs=147.6
Q ss_pred CCCcEEEcCCCCCccccCc-cccCCCCCCEEeCCCccCCCC--CCcccccCCCCCEEEccCCcccccCCccccCCCCCCE
Q 040451 58 SFPRSINLPNKSFRGEIPH-EVSNLFRLQNLTLTNNYFSGK--ILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQI 134 (566)
Q Consensus 58 ~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~ 134 (566)
++|++|+|++|.+. .+|. .+.++++|++|++++|.++.. .+..+..+++|++|++++|.+. .+|..+.++++|++
T Consensus 28 ~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCE
T ss_pred CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCE
Confidence 68899999999888 5554 478889999999999988632 2455667888888888888887 56677888888888
Q ss_pred EecccCcCCCCCc-hhhcCCCCCCEEEeeCCcccccCcccccccCccceeecccccccc--chhhhhCCCCCcEEEcccC
Q 040451 135 LNIAENHLKGQLP-ASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSG--MIPLIYNISSLQYIFIHTN 211 (566)
Q Consensus 135 L~l~~~~i~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~l~~~~~L~~L~l~~~ 211 (566)
|++++|.++...+ ..+..+++|++|++++|.+....+..+.++++|+.|++++|.+.+ .+..+..+++|++|++++|
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 8888888874333 467788888888888888876777777777888888888777664 2244555555555555555
Q ss_pred cCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCC-CCCEEECCCCcC
Q 040451 212 RFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQ-NLSRLNLGENNL 286 (566)
Q Consensus 212 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~ 286 (566)
.+.+..+..+. .+++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+..++ +|+.|++++|.+
T Consensus 186 ~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 186 QLEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CCCEECTTTTT-TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred CcCCcCHHHhc-CCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 55533232222 445555555555555544443444455555555555554444444444332 444444444443
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=1.4e-25 Score=227.57 Aligned_cols=228 Identities=22% Similarity=0.232 Sum_probs=170.5
Q ss_pred cccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 040451 330 TMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILE 409 (566)
Q Consensus 330 ~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 409 (566)
.++.|++++|.+.+..+..|..+++|+.|++++|.+++..+..+..+++|++|++++|.++...+..+..+++|++|+++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 45555555555555555667777778888888777776666777777788888888887775555567777788888888
Q ss_pred cCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCccccc
Q 040451 410 VNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGE 489 (566)
Q Consensus 410 ~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 489 (566)
+|++....+..|..+++|+.|++++|...+.++...+.....++.|++++|.+.+. + .+..+++|++|++++|.+++.
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEE
T ss_pred CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCccc
Confidence 88777666667777788888888775544455554444344447788888877743 3 477788888888888888877
Q ss_pred CCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCc
Q 040451 490 IPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 559 (566)
Q Consensus 490 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~ 559 (566)
.+..|.++++|++|++++|.+++..+..|..+++|+.|++++|+++...+..+..+++|+.|+|++|++.
T Consensus 234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 7888888888888888888888877888888888888888888888777777788888888888888654
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=2.5e-26 Score=225.34 Aligned_cols=181 Identities=18% Similarity=0.174 Sum_probs=119.6
Q ss_pred cCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCE
Q 040451 55 GNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQI 134 (566)
Q Consensus 55 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~ 134 (566)
..|+.....+.+++.++ .+|..+. ++|++|++++|.++...+..+..+++|++|++++|.+++..+..|+++++|++
T Consensus 28 ~~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp CEECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 44556666788888887 7776554 58888999988888655567888888888888888888666777888888888
Q ss_pred EecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCc-ccccccCccceeeccccc-cccch-hhhhCCCCCcEEEcccC
Q 040451 135 LNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIP-STISHVRNLISFNVARNQ-FSGMI-PLIYNISSLQYIFIHTN 211 (566)
Q Consensus 135 L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~-~~~~~-~~l~~~~~L~~L~l~~~ 211 (566)
|++++|+++...+..+..+++|++|++++|.+....+ ..+.++++|+.|++++|. +.... ..+..+++|++|++++|
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 8888888884444447888888888888888774333 356677777777777663 43332 33444455555555554
Q ss_pred cCcccCCccccCCCCCccEEEccCCccc
Q 040451 212 RFHGSLPLDNGVNLPNLRYFSISGNNLT 239 (566)
Q Consensus 212 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 239 (566)
.+.+..+..+. .+++|++|++++|.+.
T Consensus 185 ~l~~~~~~~l~-~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 185 DLQSYEPKSLK-SIQNVSHLILHMKQHI 211 (353)
T ss_dssp TCCEECTTTTT-TCSEEEEEEEECSCST
T ss_pred CcCccCHHHHh-ccccCCeecCCCCccc
Confidence 44433232222 3444444444444433
No 59
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=1.9e-28 Score=258.47 Aligned_cols=401 Identities=13% Similarity=0.115 Sum_probs=256.7
Q ss_pred CcEEEEEcCCCCCcccC---------------cccCcCCCCCcEEEcCCCCCccccCcccc-CCCCCCEEeCCCc-cCCC
Q 040451 34 QRVTGLDLRQQSVGGVL---------------SPFVGNLSFPRSINLPNKSFRGEIPHEVS-NLFRLQNLTLTNN-YFSG 96 (566)
Q Consensus 34 ~~v~~l~l~~~~~~~~~---------------~~~l~~l~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~l~~~-~~~~ 96 (566)
+++++++++++...... +.....+++|++|+|+++.+++..+..+. .+++|++|++++| .++.
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 145 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST 145 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence 67899999986532211 11235788999999999998877666665 6899999999999 5543
Q ss_pred C-CCcccccCCCCCEEEccCCcccccCCccc----cCCCCCCEEecccCc--CCCC-CchhhcCCCCCCEEEeeCCcccc
Q 040451 97 K-ILTDLSHCSNVMKFEASNNKLEAEIPVEI----GNLLMLQILNIAENH--LKGQ-LPASIGNLSALQEIDVRGNRLGG 168 (566)
Q Consensus 97 ~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~----~~l~~L~~L~l~~~~--i~~~-~~~~l~~l~~L~~L~l~~~~~~~ 168 (566)
. .+..+..+++|++|++++|.+++..+..+ ..+++|++|+++++. +... +...+..+++|++|++++|....
T Consensus 146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~ 225 (594)
T 2p1m_B 146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE 225 (594)
T ss_dssp HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH
T ss_pred HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH
Confidence 2 33445589999999999999775444333 477899999999986 2211 22223567999999999984333
Q ss_pred cCcccccccCccceeecccc-------ccccchhhhhCCCCCcEE-EcccCcCcccCCccccCCCCCccEEEccCCcccc
Q 040451 169 RIPSTISHVRNLISFNVARN-------QFSGMIPLIYNISSLQYI-FIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTG 240 (566)
Q Consensus 169 ~~~~~l~~l~~L~~L~l~~~-------~~~~~~~~l~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 240 (566)
.++..+..+++|+.|+++.+ .+.+....+.++++|+.+ .+..... +.++.... .+++|++|++++|.++.
T Consensus 226 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~-~~~~L~~L~L~~~~l~~ 303 (594)
T 2p1m_B 226 KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYS-VCSRLTTLNLSYATVQS 303 (594)
T ss_dssp HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHH-HHTTCCEEECTTCCCCH
T ss_pred HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHHHHHH-hhCCCCEEEccCCCCCH
Confidence 46777888999999996554 344444677889999999 3333222 23332222 57899999999998764
Q ss_pred ccc-cccccCCCCceEeccccccccccc-ccccCCCCCCEEECCCCcC----CCCCCCChhhhhhhcCCCCCCEEEcccC
Q 040451 241 SLQ-DSLSNATNLQGLEINGNLFSGKVS-INFSRLQNLSRLNLGENNL----GTGTANDLDFITLLTNCTKLEVLDLHSN 314 (566)
Q Consensus 241 ~~~-~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~----~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 314 (566)
... ..+..+++|++|++++| +.+... .....+++|+.|++..+.. ......+.........+++|++|.+..+
T Consensus 304 ~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~ 382 (594)
T 2p1m_B 304 YDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCR 382 (594)
T ss_dssp HHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEES
T ss_pred HHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcC
Confidence 432 23567899999999988 332222 2224578899998854310 0001111122222345788888888878
Q ss_pred ccccccchhHhhccccccEEEcc--c----cCccC-----ccchhhhccCCCCEEecCCccccccchhhccC-CCCCCEE
Q 040451 315 RFGGVLPFSLANLSITMTEIANG--S----NQISG-----TIPDVIANLVNLNALGVESNQLAGTIPLAIGE-LKSLQML 382 (566)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~~l~l~--~----~~~~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L 382 (566)
.+++.....+....++++.|++. + +.+++ .++..+..+++|+.|++++ .+++.....+.. +++|++|
T Consensus 383 ~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L 461 (594)
T 2p1m_B 383 QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEML 461 (594)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEE
T ss_pred CcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEe
Confidence 87766665555545677777777 2 33331 1122245666777777765 444443344433 6677777
Q ss_pred EccCCcccccCCccc-cCCCCCCeEecccCcceecCCc-cccCCCCCcEEEccCCccc
Q 040451 383 FLNENFLRGTIPSSL-GNLTLLTQLILEVNNLQGKIPP-SIGNCQNLILLTTRKNKLS 438 (566)
Q Consensus 383 ~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~~~~~-~~~~~~~L~~L~l~~~~l~ 438 (566)
++++|.+++..+..+ ..+++|++|++++|++++.... ....+++|+.|++++|+++
T Consensus 462 ~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 462 SVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp EEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred eccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 777777654433333 4567777777777766433222 2334666777777776664
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1.7e-25 Score=226.09 Aligned_cols=228 Identities=21% Similarity=0.198 Sum_probs=160.2
Q ss_pred cccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 040451 330 TMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILE 409 (566)
Q Consensus 330 ~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 409 (566)
.++.|++++|.+.+..+..|..+++|+.|++++|.+....+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 44444444444444444566677777777777777776666667777777777777777765555566777777777777
Q ss_pred cCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCccccc
Q 040451 410 VNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGE 489 (566)
Q Consensus 410 ~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 489 (566)
+|++....+..|..+++|+.|++++|...+.++...+.....++.|++++|.+.. ++ .+..+++|++|++++|.+++.
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEE
T ss_pred CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCcc
Confidence 7777766666677777777777777544445554433333344777777777763 33 367778888888888888876
Q ss_pred CCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCc
Q 040451 490 IPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 559 (566)
Q Consensus 490 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~ 559 (566)
.+..|.++++|++|++++|.+++..+..|..+++|+.|++++|+++...++.+..+++|+.|+|++|++.
T Consensus 223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 7777888888888888888888777777888888888888888888666677777888888888888653
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=4.2e-25 Score=224.08 Aligned_cols=246 Identities=20% Similarity=0.234 Sum_probs=181.0
Q ss_pred CcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEeccc
Q 040451 60 PRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAE 139 (566)
Q Consensus 60 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 139 (566)
.+.++.++..++ .+|..+. +++++|++++|.++...+..|..+++|++|++++|.+.+..+..|.++++|++|++++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 456666666666 5665443 5777888888877766677777788888888888877766667777788888888888
Q ss_pred CcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeecccc-ccccch-hhhhCCCCCcEEEcccCcCcccC
Q 040451 140 NHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARN-QFSGMI-PLIYNISSLQYIFIHTNRFHGSL 217 (566)
Q Consensus 140 ~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~ 217 (566)
|+++...+..+..+++|++|++++|.+....+..+.++++|+.|++++| .+.... ..+..+++|++|++++|.+. .+
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~ 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DM 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-cc
Confidence 8777555555777788888888888777655566777788888888774 344333 45667778888888888776 34
Q ss_pred CccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCChhhh
Q 040451 218 PLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFI 297 (566)
Q Consensus 218 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 297 (566)
+. + ..+++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.....
T Consensus 212 ~~-~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------ 283 (452)
T 3zyi_A 212 PN-L-TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH------ 283 (452)
T ss_dssp CC-C-TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT------
T ss_pred cc-c-cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh------
Confidence 42 2 367788888888888887777788888888888888888887777778888888888888888876655
Q ss_pred hhhcCCCCCCEEEcccCccc
Q 040451 298 TLLTNCTKLEVLDLHSNRFG 317 (566)
Q Consensus 298 ~~l~~~~~L~~L~l~~~~~~ 317 (566)
..+..+++|+.|++++|.+.
T Consensus 284 ~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 284 DLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TSSTTCTTCCEEECCSSCEE
T ss_pred HHhccccCCCEEEccCCCcC
Confidence 34567788888888888654
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=4.5e-25 Score=223.05 Aligned_cols=227 Identities=22% Similarity=0.219 Sum_probs=113.5
Q ss_pred CCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEec
Q 040451 58 SFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNI 137 (566)
Q Consensus 58 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l 137 (566)
+++++|+|++|.+....+..|.++++|++|+|++|.++...+..|..+++|++|++++|+++...+..|.++++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 34555555555555444444555555555555555555444444555555555555555554333334555555555555
Q ss_pred ccCcCCCCCchhhcCCCCCCEEEeeCCc-ccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCccc
Q 040451 138 AENHLKGQLPASIGNLSALQEIDVRGNR-LGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGS 216 (566)
Q Consensus 138 ~~~~i~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 216 (566)
++|.++...+..+..+++|++|++++|. +....+..+.++++|+.|++++|.+...+ .+.
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~------------------ 204 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLT------------------ 204 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCT------------------
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccC------------------
Confidence 5555553333344555555555555422 22222233444555555555555444322 233
Q ss_pred CCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCChhh
Q 040451 217 LPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDF 296 (566)
Q Consensus 217 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 296 (566)
.+++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.....
T Consensus 205 -------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----- 272 (440)
T 3zyj_A 205 -------PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH----- 272 (440)
T ss_dssp -------TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT-----
T ss_pred -------CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh-----
Confidence 44555555555555554445555555555555555555555545555555555555555555554433
Q ss_pred hhhhcCCCCCCEEEcccCcc
Q 040451 297 ITLLTNCTKLEVLDLHSNRF 316 (566)
Q Consensus 297 ~~~l~~~~~L~~L~l~~~~~ 316 (566)
..+..+++|+.|++++|.+
T Consensus 273 -~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 273 -DLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp -TTTSSCTTCCEEECCSSCE
T ss_pred -hHhccccCCCEEEcCCCCc
Confidence 2344455555555555544
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=3.5e-25 Score=210.35 Aligned_cols=224 Identities=22% Similarity=0.181 Sum_probs=135.1
Q ss_pred CEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccC
Q 040451 307 EVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNE 386 (566)
Q Consensus 307 ~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 386 (566)
+.++.+++.++.. |.. .++.+++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~~i-p~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-PVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSC-CTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcccC-CcC---CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 5666666666533 221 235677777777777765556667777777777777777666666677777777777777
Q ss_pred Cc-ccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceec
Q 040451 387 NF-LRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGH 465 (566)
Q Consensus 387 ~~-~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~ 465 (566)
|. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+..+ +.|++++|.+.+.
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-THLFLHGNRISSV 168 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCEE
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc-cEEECCCCccccc
Confidence 75 554446666677777777777777766556666677777777777776653222223333332 5555555555544
Q ss_pred CCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCccc
Q 040451 466 FPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLS 535 (566)
Q Consensus 466 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 535 (566)
.+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 4444555555555555555555444555555555555555555555443344555555555555555554
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.3e-27 Score=229.98 Aligned_cols=264 Identities=18% Similarity=0.167 Sum_probs=159.4
Q ss_pred CCCCCCCCCCcccCccCCCCCcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCc-cccCcccc-------CCCCCC
Q 040451 14 SWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFR-GEIPHEVS-------NLFRLQ 85 (566)
Q Consensus 14 ~w~~~~~~c~w~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~-~~~~~~~~-------~l~~L~ 85 (566)
+|.....|+.+..++......+++.+++++|.+ .+|..+... |++|+|++|.+. ..++..+. ++++|+
T Consensus 23 ~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~ 98 (312)
T 1wwl_A 23 DWSSAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98 (312)
T ss_dssp CGGGGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCC
T ss_pred chHHHhhhhccccEEEEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCcc
Confidence 455555555554433221123455566666666 455544433 677777777763 34555444 567777
Q ss_pred EEeCCCccCCCCCCccc--ccCCCCCEEEccCCcccccCCccccCC-----CCCCEEecccCcCCCCCchhhcCCCCCCE
Q 040451 86 NLTLTNNYFSGKILTDL--SHCSNVMKFEASNNKLEAEIPVEIGNL-----LMLQILNIAENHLKGQLPASIGNLSALQE 158 (566)
Q Consensus 86 ~L~l~~~~~~~~~~~~~--~~l~~L~~L~L~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~i~~~~~~~l~~l~~L~~ 158 (566)
+|++++|.+++..|..+ ..+++|++|++++|.+++. |..++++ ++|++|++++|++++..+..+..+++|++
T Consensus 99 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 177 (312)
T 1wwl_A 99 ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALST 177 (312)
T ss_dssp EEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCE
T ss_pred EEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCE
Confidence 77777777766666654 6777777777777777644 5556555 67777777777777555566777777777
Q ss_pred EEeeCCccccc--Ccccc--cccCccceeeccccccccch----hhhhCCCCCcEEEcccCcCcccCCccccCCCCCccE
Q 040451 159 IDVRGNRLGGR--IPSTI--SHVRNLISFNVARNQFSGMI----PLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRY 230 (566)
Q Consensus 159 L~l~~~~~~~~--~~~~l--~~l~~L~~L~l~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 230 (566)
|++++|++.+. .+..+ .++++|+.|++++|.+.... ..+..+++|++|++++|.+.+..+...+..+++|++
T Consensus 178 L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 257 (312)
T 1wwl_A 178 LDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257 (312)
T ss_dssp EECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCE
T ss_pred EECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCE
Confidence 77777765432 22223 56677777777777766332 223456677777777777665554333334566677
Q ss_pred EEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCC
Q 040451 231 FSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLG 287 (566)
Q Consensus 231 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 287 (566)
|++++|.++ ..|..+. ++|+.|++++|.+++. |. +..+++|+.|++++|.+.
T Consensus 258 L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 258 LNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp EECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred EECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 777766666 3344343 5666666666666544 33 556666666666666554
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.1e-26 Score=224.06 Aligned_cols=206 Identities=16% Similarity=0.192 Sum_probs=132.4
Q ss_pred hhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCc
Q 040451 349 IANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLI 428 (566)
Q Consensus 349 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 428 (566)
+..+++|+.|++++|.+++.. ..++|++|++++|.+++..+. .+++|++|++++|++++..+..+..+++|+
T Consensus 76 ~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 147 (317)
T 3o53_A 76 LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQ 147 (317)
T ss_dssp ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEE
T ss_pred hhhcCCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCC
Confidence 344455555555555554321 225555555555555533221 245555666666655544444555556666
Q ss_pred EEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCC
Q 040451 429 LLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDN 508 (566)
Q Consensus 429 ~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 508 (566)
.|++++|.+.+..+..+....+.++.|++++|.+.+.. ....+++|++|++++|.++ .++..+..+++|++|++++|
T Consensus 148 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNN 224 (317)
T ss_dssp EEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTS
T ss_pred EEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCC
Confidence 66666666554444444322233366666666665442 2334788999999999998 45555888899999999999
Q ss_pred cccccCCcCCCCCCCCCEEeCCCCccc-ccCCccCcCCCCCCeeeCC-CCcCcccCCCCC
Q 040451 509 SFTRSIPSTLSSLKSITELDLSRNNLS-GHIPQYLENLSFLSFLNLS-YNHFEGKVPIEC 566 (566)
Q Consensus 509 ~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~-~~~l~~~~p~~~ 566 (566)
.++ .+|..+..+++|+.|++++|++. ...+..+..+++|+.|+++ .+.+.+..|.+|
T Consensus 225 ~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~ 283 (317)
T 3o53_A 225 KLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283 (317)
T ss_dssp CCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCC
T ss_pred ccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhcc
Confidence 998 46778888999999999999988 6677888888899999988 444555556555
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=1.9e-25 Score=212.17 Aligned_cols=269 Identities=22% Similarity=0.194 Sum_probs=198.4
Q ss_pred CEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCC
Q 040451 277 SRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLN 356 (566)
Q Consensus 277 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~ 356 (566)
+.++.+++.+...+. .-.+++++|+++++.+++..+..+..+ +++++|++++|.+.+..+..+..+++|+
T Consensus 14 ~~~~c~~~~l~~ip~---------~~~~~l~~L~l~~n~i~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 83 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV---------GIPAASQRIFLHGNRISHVPAASFRAC-RNLTILWLHSNVLARIDAAAFTGLALLE 83 (285)
T ss_dssp CEEECCSSCCSSCCT---------TCCTTCSEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred eEEEcCcCCcccCCc---------CCCCCceEEEeeCCcCCccCHHHcccC-CCCCEEECCCCccceeCHhhcCCccCCC
Confidence 567777777765543 124688888888888887666666554 5888888888888877777888888888
Q ss_pred EEecCCcc-ccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCC
Q 040451 357 ALGVESNQ-LAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKN 435 (566)
Q Consensus 357 ~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 435 (566)
.|++++|. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|
T Consensus 84 ~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp EEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC
Confidence 88888886 76666777888888888888888888666777888888888888888888666666888888888888888
Q ss_pred cccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCC
Q 040451 436 KLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIP 515 (566)
Q Consensus 436 ~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 515 (566)
.+++..+..+..+..+ +.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++...-+
T Consensus 164 ~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 164 RISSVPERAFRGLHSL-DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp CCCEECTTTTTTCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred cccccCHHHhcCcccc-CEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 8874333344444444 888888888887778888888888888888888886555668888888888888888774221
Q ss_pred cCCCCCCCCCEEeCCCCcccccCCccCcC--CCCCCeeeCCCCc
Q 040451 516 STLSSLKSITELDLSRNNLSGHIPQYLEN--LSFLSFLNLSYNH 557 (566)
Q Consensus 516 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~--~~~L~~L~l~~~~ 557 (566)
. ......++.+..+.+.+....|+.+.+ +..++..+++||+
T Consensus 243 ~-~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C~ 285 (285)
T 1ozn_A 243 A-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA 285 (285)
T ss_dssp G-HHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC-
T ss_pred c-HHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccCC
Confidence 1 011123455556677777677776643 5667777777774
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=8.5e-25 Score=227.13 Aligned_cols=220 Identities=21% Similarity=0.279 Sum_probs=143.7
Q ss_pred CCCCCCCCCCCCCCCCCcccCc--------cCCCCCcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccc
Q 040451 7 DPLGVTSSWNNSINLCQWTGVT--------CGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEV 78 (566)
Q Consensus 7 ~~~~~~~~w~~~~~~c~w~~~~--------~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 78 (566)
|+-.....|....++|.|.|.. |.. .+++.|++++++++ .+|..+. ++|++|+|++|.++ .+|.
T Consensus 7 ~~~~~w~~W~~~~~~~~~~~r~~~~~~~~~c~~--~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~-- 78 (622)
T 3g06_A 7 EYDAVWSAWRRAAPAEESRGRAAVVQKMRACLN--NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA-- 78 (622)
T ss_dssp ---CHHHHHHHTCCGGGHHHHHHHHHHHHHHHH--HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC--
T ss_pred HHHHHHHHHHhcCCcchhccccccCcccccccC--CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC--
Confidence 5556667788889999996543 321 45888999999988 5666555 78999999999888 6775
Q ss_pred cCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCE
Q 040451 79 SNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQE 158 (566)
Q Consensus 79 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~ 158 (566)
.+++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|++++|+++ .+|.. +++|++
T Consensus 79 -~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~ 145 (622)
T 3g06_A 79 -LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQE 145 (622)
T ss_dssp -CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCE
T ss_pred -cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEECCCCCCC-cCCCC---CCCCCE
Confidence 5688999999998887 3444 6788888888888887 3444 5677888888888887 45553 477888
Q ss_pred EEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCcc
Q 040451 159 IDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNL 238 (566)
Q Consensus 159 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 238 (566)
|++++|.+++ +|. .+++|+.|++++|.+..++ ..+++|+.|++++|.+. .+|. ..++|+.|++++|.+
T Consensus 146 L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l 213 (622)
T 3g06_A 146 LSVSDNQLAS-LPA---LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRL 213 (622)
T ss_dssp EECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCC
T ss_pred EECcCCcCCC-cCC---ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCC-CCCC----ccchhhEEECcCCcc
Confidence 8888887763 333 2356667777777666544 33455666666665554 2332 234555555555555
Q ss_pred ccccccccccCCCCceEeccccccc
Q 040451 239 TGSLQDSLSNATNLQGLEINGNLFS 263 (566)
Q Consensus 239 ~~~~~~~l~~l~~L~~L~l~~~~~~ 263 (566)
+.. +. .+++|+.|++++|.++
T Consensus 214 ~~l-~~---~~~~L~~L~Ls~N~L~ 234 (622)
T 3g06_A 214 TSL-PA---LPSGLKELIVSGNRLT 234 (622)
T ss_dssp SSC-CC---CCTTCCEEECCSSCCS
T ss_pred ccc-CC---CCCCCCEEEccCCccC
Confidence 422 21 1244555555554444
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=2.3e-26 Score=221.19 Aligned_cols=246 Identities=20% Similarity=0.187 Sum_probs=182.8
Q ss_pred CCCCCEEEcccCccccccchhHhhccccccEEEccccCcc-Cccchhhh-------ccCCCCEEecCCccccccchhhc-
Q 040451 303 CTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQIS-GTIPDVIA-------NLVNLNALGVESNQLAGTIPLAI- 373 (566)
Q Consensus 303 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~~~~- 373 (566)
.++|+++++++|.+ ..|..+.. .++.+++++|.+. ..++..+. .+++|++|++++|.+++..+..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred CCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 34556666666655 33443333 2566666666653 23444433 67888888888888887777665
Q ss_pred -cCCCCCCEEEccCCcccccCCccccCC-----CCCCeEecccCcceecCCccccCCCCCcEEEccCCccccc--Cchhh
Q 040451 374 -GELKSLQMLFLNENFLRGTIPSSLGNL-----TLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGT--VPRQL 445 (566)
Q Consensus 374 -~~~~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~ 445 (566)
..+++|++|++++|.+++. |..+..+ ++|++|++++|++.+..+..+..+++|++|++++|++.+. .+..+
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 7788888888888888855 6666665 8888888888888877777888888888888888887644 22233
Q ss_pred --hccCCcCcEEEccCCcceec---CCccccCCCCCCEEEccCCcccccCC-cCCcCCCCCcEEeCCCCcccccCCcCCC
Q 040451 446 --LHIITLPVLLDLSDNLLNGH---FPAEVGNLKNLVSLDISSNMFSGEIP-TTLGGCTSLEYLGMQDNSFTRSIPSTLS 519 (566)
Q Consensus 446 --~~~~~~l~~L~l~~~~~~~~---~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 519 (566)
..+. .++.|++++|.+.+. ....+..+++|++|++++|.+.+..| ..+..+++|++|++++|.++ .+|..+.
T Consensus 196 ~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~ 273 (312)
T 1wwl_A 196 CPLKFP-TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP 273 (312)
T ss_dssp CTTSCT-TCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred HhccCC-CCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence 3343 448888888888732 22335678999999999999986664 55677899999999999999 6777776
Q ss_pred CCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCcc
Q 040451 520 SLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEG 560 (566)
Q Consensus 520 ~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 560 (566)
++|+.|++++|++++. |. +..+++|++|++++|++++
T Consensus 274 --~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 --AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp --SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred --CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 8999999999999965 66 8899999999999999986
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=2.8e-24 Score=202.09 Aligned_cols=216 Identities=17% Similarity=0.226 Sum_probs=161.7
Q ss_pred CCCCCcccCccCCCCCcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCC
Q 040451 19 INLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKI 98 (566)
Q Consensus 19 ~~~c~w~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 98 (566)
.++|.|.|+.|.-. .+++.++++++.++. +|..+. +++++|+|++|.+....+..+.++++|++|++++|.++...
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 57899999999644 567789999999884 555444 67999999999988555567889999999999999888555
Q ss_pred CcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccC
Q 040451 99 LTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVR 178 (566)
Q Consensus 99 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 178 (566)
+..+..+++|++|++++|.+....+..+.++++|++|++++|.++...+..+..+++|++|++++|.+....+..+..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 56678889999999999988865556678888899999998888866666778888888888888888765555677788
Q ss_pred ccceeeccccccccch-hhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccc
Q 040451 179 NLISFNVARNQFSGMI-PLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLT 239 (566)
Q Consensus 179 ~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 239 (566)
+|+.|++++|.+...+ ..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+.
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCee
Confidence 8888888888777655 33555666666666666665 344333335555556665555443
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=2e-25 Score=215.10 Aligned_cols=245 Identities=16% Similarity=0.176 Sum_probs=148.6
Q ss_pred cCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEE
Q 040451 127 GNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYI 206 (566)
Q Consensus 127 ~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L 206 (566)
..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+.. ..++|++|
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L 104 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETL 104 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE----ECTTCCEE
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc----CCCCcCEE
Confidence 344455555555555554334445555555555555555543222 445555555555555544332 12556666
Q ss_pred EcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccc-cCCCCCCEEECCCCc
Q 040451 207 FIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINF-SRLQNLSRLNLGENN 285 (566)
Q Consensus 207 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~ 285 (566)
++++|.+.+. +.. .+++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+ ..+++|+.|++++|.
T Consensus 105 ~l~~n~l~~~-~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 105 HAANNNISRV-SCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp ECCSSCCSEE-EEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred ECCCCccCCc-Ccc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence 6666655522 211 35667777777777776666667777777777777777765555544 356777777777776
Q ss_pred CCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccc
Q 040451 286 LGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQL 365 (566)
Q Consensus 286 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 365 (566)
+..... ...+++|++|++++|.++ .++..+..+++|+.|++++|.+
T Consensus 181 l~~~~~--------~~~l~~L~~L~Ls~N~l~--------------------------~l~~~~~~l~~L~~L~L~~N~l 226 (317)
T 3o53_A 181 IYDVKG--------QVVFAKLKTLDLSSNKLA--------------------------FMGPEFQSAAGVTWISLRNNKL 226 (317)
T ss_dssp CCEEEC--------CCCCTTCCEEECCSSCCC--------------------------EECGGGGGGTTCSEEECTTSCC
T ss_pred Cccccc--------ccccccCCEEECCCCcCC--------------------------cchhhhcccCcccEEECcCCcc
Confidence 654422 123556666666666554 2233466777888888888887
Q ss_pred cccchhhccCCCCCCEEEccCCccc-ccCCccccCCCCCCeEecccCc-ceec
Q 040451 366 AGTIPLAIGELKSLQMLFLNENFLR-GTIPSSLGNLTLLTQLILEVNN-LQGK 416 (566)
Q Consensus 366 ~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~-l~~~ 416 (566)
+ .++..+..+++|++|++++|++. +..+..+..+++|+.+++.+++ +.+.
T Consensus 227 ~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 227 V-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp C-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred c-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 7 35666777888888888888877 5667777788888888887543 4433
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=7.7e-23 Score=212.45 Aligned_cols=267 Identities=22% Similarity=0.255 Sum_probs=145.3
Q ss_pred CCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEe
Q 040451 82 FRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDV 161 (566)
Q Consensus 82 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l 161 (566)
.++++|+++++.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|+++ .+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 35777888888777 5555443 67777777777776 4454 4567777777777776 4554 5567777777
Q ss_pred eCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccc
Q 040451 162 RGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGS 241 (566)
Q Consensus 162 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 241 (566)
++|.++. +|. .+++|+.|++++|.+..++.. +++|++|++++|.++..
T Consensus 109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~~lp~~----------------------------l~~L~~L~Ls~N~l~~l 156 (622)
T 3g06_A 109 FSNPLTH-LPA---LPSGLCKLWIFGNQLTSLPVL----------------------------PPGLQELSVSDNQLASL 156 (622)
T ss_dssp CSCCCCC-CCC---CCTTCCEEECCSSCCSCCCCC----------------------------CTTCCEEECCSSCCSCC
T ss_pred cCCcCCC-CCC---CCCCcCEEECCCCCCCcCCCC----------------------------CCCCCEEECcCCcCCCc
Confidence 7776653 333 345566666665555443321 23444444444444321
Q ss_pred cccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccc
Q 040451 242 LQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLP 321 (566)
Q Consensus 242 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 321 (566)
+. .+++|+.|++++|.++. .+ ..+++|+.|++++|.+...+. ..++|+.|++++|.++.
T Consensus 157 -~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l~~----------~~~~L~~L~L~~N~l~~--- 215 (622)
T 3g06_A 157 -PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASLPT----------LPSELYKLWAYNNRLTS--- 215 (622)
T ss_dssp -CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCCSS---
T ss_pred -CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCCCC----------ccchhhEEECcCCcccc---
Confidence 11 12344444554444442 11 223445555555554433221 12445555555554431
Q ss_pred hhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCC
Q 040451 322 FSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLT 401 (566)
Q Consensus 322 ~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 401 (566)
+|. .+++|+.|++++|.+++ ++ ..+++|++|++++|.++ .+|. .++
T Consensus 216 -----------------------l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~ 261 (622)
T 3g06_A 216 -----------------------LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPS 261 (622)
T ss_dssp -----------------------CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCT
T ss_pred -----------------------cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccc
Confidence 111 12455666666665553 22 34456666666666665 3343 456
Q ss_pred CCCeEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhhc
Q 040451 402 LLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLH 447 (566)
Q Consensus 402 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 447 (566)
+|+.|++++|+++ .+|..+..+++|+.|++++|.+.+..+..+..
T Consensus 262 ~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 262 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred cCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 6666666666666 55666666666666666666666555554443
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=2.3e-24 Score=219.62 Aligned_cols=235 Identities=17% Similarity=0.186 Sum_probs=163.4
Q ss_pred CCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEc
Q 040451 305 KLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFL 384 (566)
Q Consensus 305 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 384 (566)
+|++|++++|.+.+..+..+..+ ++|+.|++++|.+++..+ +..+++|+.|++++|.+++.. ..++|++|++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPF-TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTC-TTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred CccEEEeeCCcCCCCCHHHHhCC-CCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEEC
Confidence 34444444444433333333322 244444444444443333 667778888888888777432 2378888888
Q ss_pred cCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCccee
Q 040451 385 NENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNG 464 (566)
Q Consensus 385 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~ 464 (566)
++|.+++..+. .+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+....+.++.|++++|.+.+
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 88887754432 457788888888888877777788888888888888888866666666333444888888888876
Q ss_pred cCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCccc-ccCCccCc
Q 040451 465 HFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLS-GHIPQYLE 543 (566)
Q Consensus 465 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~l~ 543 (566)
..+ ...+++|+.|++++|.+++ +|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. ..+|..+.
T Consensus 184 ~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 184 VKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp EEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred ccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 532 3458889999999999885 44458888899999999998884 6777888889999999999887 55566777
Q ss_pred CCCCCCeeeCC
Q 040451 544 NLSFLSFLNLS 554 (566)
Q Consensus 544 ~~~~L~~L~l~ 554 (566)
.++.|+.++++
T Consensus 260 ~l~~L~~l~~~ 270 (487)
T 3oja_A 260 KNQRVQTVAKQ 270 (487)
T ss_dssp TCHHHHHHHHH
T ss_pred hCCCCcEEecc
Confidence 77888887775
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=3.6e-23 Score=195.45 Aligned_cols=205 Identities=20% Similarity=0.218 Sum_probs=120.7
Q ss_pred ccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 040451 329 ITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLIL 408 (566)
Q Consensus 329 ~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 408 (566)
..+++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46677777777766655556666777777777777666555556666777777777777766555566666777777777
Q ss_pred ccCcceecCCccccCCCCCcEEEccCCccccc-CchhhhccCCcCcEEEccCCcceecCCccccCCCCCC----EEEccC
Q 040451 409 EVNNLQGKIPPSIGNCQNLILLTTRKNKLSGT-VPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLV----SLDISS 483 (566)
Q Consensus 409 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~----~L~l~~ 483 (566)
++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+..+ +.|++++|.+.+..+..+..+++|+ +|++++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL-EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC-CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC-CEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 77776655555566667777777777666532 34444444333 5555555555544444444444444 555555
Q ss_pred CcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCccc
Q 040451 484 NMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLS 535 (566)
Q Consensus 484 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 535 (566)
|.+....+..+. ..+|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 187 n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 187 NPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp SCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 555533333332 235555555555555444444455555555555555555
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=3.3e-23 Score=211.10 Aligned_cols=217 Identities=21% Similarity=0.159 Sum_probs=188.6
Q ss_pred cccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEe
Q 040451 328 SITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLI 407 (566)
Q Consensus 328 ~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 407 (566)
+++++.|++++|.+.+..|..|..+++|+.|++++|.+++..+ +..+++|++|++++|.+++. + ..++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEEE
Confidence 3589999999999999888899999999999999999987655 88999999999999998843 2 338999999
Q ss_pred cccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCcccc-CCCCCCEEEccCCcc
Q 040451 408 LEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVG-NLKNLVSLDISSNMF 486 (566)
Q Consensus 408 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~ 486 (566)
+++|.+++..+. .+++|+.|++++|.+.+..+..+..+..+ +.|++++|.+.+..+..+. .+++|+.|++++|.+
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV-QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSE-EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCC-CEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 999999865543 46889999999999997667677666666 9999999999988787776 799999999999999
Q ss_pred cccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCc
Q 040451 487 SGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 559 (566)
Q Consensus 487 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~ 559 (566)
++..+ +..+++|++|++++|.+++. |..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++.
T Consensus 182 ~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 182 YDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBC
T ss_pred ccccc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCc
Confidence 85532 44689999999999999964 445889999999999999999 46778889999999999999987
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=1.9e-22 Score=190.56 Aligned_cols=205 Identities=17% Similarity=0.164 Sum_probs=128.5
Q ss_pred CCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEec
Q 040451 58 SFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNI 137 (566)
Q Consensus 58 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l 137 (566)
++|++|++++|.+++..+..+.++++|++|++++|.++...+..+..+++|++|++++|.+.+..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 35666666666666444445666666666666666666544555666666666666666666555556666666666666
Q ss_pred ccCcCCCCCchhhcCCCCCCEEEeeCCccccc-CcccccccCccceeeccccccccch-hhhhCCCCCc----EEEcccC
Q 040451 138 AENHLKGQLPASIGNLSALQEIDVRGNRLGGR-IPSTISHVRNLISFNVARNQFSGMI-PLIYNISSLQ----YIFIHTN 211 (566)
Q Consensus 138 ~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~----~L~l~~~ 211 (566)
++|.+++..+..+..+++|++|++++|.+... +|..+.++++|+.|++++|.+.+.. ..+..+++|+ +|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 66666644444566666666666666666542 3566666666666666666665544 3333333333 6777777
Q ss_pred cCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccc
Q 040451 212 RFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSG 264 (566)
Q Consensus 212 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 264 (566)
.+. .++...+ ...+|++|++++|.++...+..+..+++|+.|++++|.+..
T Consensus 188 ~l~-~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 188 PMN-FIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCC-EECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred ccc-ccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 776 3443433 34478888888887776655566777888888888877653
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=3.8e-22 Score=187.53 Aligned_cols=202 Identities=24% Similarity=0.293 Sum_probs=135.3
Q ss_pred cccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 040451 330 TMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILE 409 (566)
Q Consensus 330 ~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 409 (566)
..+.++++++.++. +|..+. ++++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 46677777777763 444332 567888888888776666677778888888888888775555556777888888888
Q ss_pred cCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCccccc
Q 040451 410 VNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGE 489 (566)
Q Consensus 410 ~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 489 (566)
+|.+.+..+..+..+++|++|++++|.+.+..+..+..+..+ +.|++++|.+.+..+..|..+++|++|++++|.++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL-TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC-CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 888776666667777888888888877764333333333333 6666666666655444566666666666666666654
Q ss_pred CCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCccc
Q 040451 490 IPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLS 535 (566)
Q Consensus 490 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 535 (566)
.+..|..+++|++|++++|++++..+..+..+++|+.|++++|++.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 4455666666666666666666544455666666666666666665
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.5e-22 Score=190.44 Aligned_cols=204 Identities=24% Similarity=0.219 Sum_probs=146.8
Q ss_pred hhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCc
Q 040451 349 IANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLI 428 (566)
Q Consensus 349 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 428 (566)
...+++|+.|++.++.+... ..+..+++|++|++++|.+++ ...+..+++|++|++++|.+++..+..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC--chhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 44566777777777766532 245667777777777777663 23566677777777777777755555667777777
Q ss_pred EEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCC
Q 040451 429 LLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDN 508 (566)
Q Consensus 429 ~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 508 (566)
+|++++|.+.+..+..+..+..+ +.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNL-TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCccCHHHhccCCCC-CEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 77777777763333333444443 77777777777666666788888888888888888666666788888888888888
Q ss_pred cccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCcccCCC
Q 040451 509 SFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI 564 (566)
Q Consensus 509 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p~ 564 (566)
++++..+..+..+++|+.|++++|++.+ .+++|+.+++++|.++|.+|.
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBC
T ss_pred cCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccC
Confidence 8887777778888888888888888763 355788888888888888875
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=5.6e-22 Score=187.85 Aligned_cols=200 Identities=26% Similarity=0.268 Sum_probs=102.7
Q ss_pred ccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEE
Q 040451 351 NLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILL 430 (566)
Q Consensus 351 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L 430 (566)
.++++++++++++.++. +|..+ .+++++|++++|.+++..+..+..+++|++|++++|.+++..+. ..+++|++|
T Consensus 8 ~l~~l~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred ccCCccEEECCCCCCCc-CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence 34444444444444442 22222 13444555555544444444444455555555555544432211 344455555
Q ss_pred EccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcc
Q 040451 431 TTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSF 510 (566)
Q Consensus 431 ~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 510 (566)
++++|.+. .+|..+..+..+ +.|++++|++.+..+..|..+++|++|++++|.++...+..|..+++|+.|++++|++
T Consensus 83 ~Ls~N~l~-~l~~~~~~l~~L-~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTLPAL-TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp ECCSSCCS-SCCCCTTTCTTC-CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred ECCCCcCC-cCchhhccCCCC-CEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 55555444 344333333333 5555555555544445566666666666666666644445556666666666666666
Q ss_pred cccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcC
Q 040451 511 TRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF 558 (566)
Q Consensus 511 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l 558 (566)
+...+..|..+++|+.|++++|+++ .+|..+...++|+.|+|++|++
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 6444444555666666666666666 4455555555666666666654
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=2.6e-24 Score=209.77 Aligned_cols=237 Identities=16% Similarity=0.201 Sum_probs=158.3
Q ss_pred CCCCCCCcccCccCCCCCcEEEEEcCCCCCcccCcccCcCC--CCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccC
Q 040451 17 NSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNL--SFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYF 94 (566)
Q Consensus 17 ~~~~~c~w~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l--~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 94 (566)
.+..|.+|.++.+.. ..+++++++++.+. +..+.++ +++++|+++++.+.+..+. +..+++|++|++++|.+
T Consensus 32 ~~~vc~~W~~~~~~~--~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l 105 (336)
T 2ast_B 32 VSGVCKRWYRLASDE--SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVI 105 (336)
T ss_dssp TTSSCHHHHHHHTCS--TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEE
T ss_pred HHHHHHHHHHHhcCc--hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCc
Confidence 355677999888752 45788999988776 4456666 8899999999888855554 56788899999998887
Q ss_pred CCC-CCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccC-cCCCC-CchhhcCCCCCCEEEeeCC-ccccc-
Q 040451 95 SGK-ILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAEN-HLKGQ-LPASIGNLSALQEIDVRGN-RLGGR- 169 (566)
Q Consensus 95 ~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~-~i~~~-~~~~l~~l~~L~~L~l~~~-~~~~~- 169 (566)
+.. .+..+..+++|++|++++|.+++..+..++++++|++|++++| .+++. ++..+..+++|++|++++| .+++.
T Consensus 106 ~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 185 (336)
T 2ast_B 106 EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH 185 (336)
T ss_dssp CHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH
T ss_pred CHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH
Confidence 644 5666788888888888888887677777888888888888888 56642 5556777888888888888 76643
Q ss_pred CcccccccC-ccceeeccccc--cc--cchhhhhCCCCCcEEEcccCc-CcccCCccccCCCCCccEEEccCCc-ccccc
Q 040451 170 IPSTISHVR-NLISFNVARNQ--FS--GMIPLIYNISSLQYIFIHTNR-FHGSLPLDNGVNLPNLRYFSISGNN-LTGSL 242 (566)
Q Consensus 170 ~~~~l~~l~-~L~~L~l~~~~--~~--~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~ 242 (566)
++..+..++ +|+.|++++|. +. ..+..+..+++|++|++++|. +++..+..+. .+++|++|++++|. +....
T Consensus 186 ~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~ 264 (336)
T 2ast_B 186 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPET 264 (336)
T ss_dssp HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGG
T ss_pred HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEeeCCCCCCCCHHH
Confidence 455566777 78888887774 32 122444556666666666665 3333333332 44555555555552 22222
Q ss_pred ccccccCCCCceEecccc
Q 040451 243 QDSLSNATNLQGLEINGN 260 (566)
Q Consensus 243 ~~~l~~l~~L~~L~l~~~ 260 (566)
...+..+++|+.|++++|
T Consensus 265 ~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 265 LLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGCTTCCEEECTTS
T ss_pred HHHHhcCCCCCEEeccCc
Confidence 223444445555555444
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=2e-21 Score=184.07 Aligned_cols=179 Identities=21% Similarity=0.281 Sum_probs=101.5
Q ss_pred CcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCC
Q 040451 54 VGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQ 133 (566)
Q Consensus 54 l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~ 133 (566)
+.+++++++++++++.++ .+|..+. +++++|++++|.++...+..+..+++|++|++++|.+++ ++. .+.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV-DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC-CSCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccC-CCCCCcCC
Confidence 456666666666666666 5554442 466666666666665555566666666666666666653 222 25666666
Q ss_pred EEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccch-hhhhCCCCCcEEEcccCc
Q 040451 134 ILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMI-PLIYNISSLQYIFIHTNR 212 (566)
Q Consensus 134 ~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~ 212 (566)
+|++++|+++ .+|..+..+++|++|++++|+++...+..|.++++|+.|++++|.+...+ ..+..+++|+.|++++|.
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 6666666666 55666666666666666666666444455666666666666666555444 223344444444444444
Q ss_pred CcccCCccccCCCCCccEEEccCCccc
Q 040451 213 FHGSLPLDNGVNLPNLRYFSISGNNLT 239 (566)
Q Consensus 213 ~~~~~~~~~~~~~~~L~~L~l~~~~~~ 239 (566)
+. .++...+..+++|++|++++|.++
T Consensus 160 l~-~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 160 LT-ELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp CS-CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CC-ccCHHHhcCcCCCCEEECCCCcCC
Confidence 44 333333333444444444444444
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=1.3e-21 Score=181.67 Aligned_cols=189 Identities=19% Similarity=0.224 Sum_probs=150.4
Q ss_pred CCCCcccCccCCCCCcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCC
Q 040451 20 NLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKIL 99 (566)
Q Consensus 20 ~~c~w~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 99 (566)
.|+.|.|.+|. ...++++++++.+. .+|..+. +++++|+|++|.+.+..+..+.++++|++|++++|.+++..+
T Consensus 3 ~Cp~~~gC~C~---~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCN---EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEE---GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcC---CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 57899999995 34567899999887 4555454 689999999999987777778999999999999999987777
Q ss_pred cccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCc
Q 040451 100 TDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRN 179 (566)
Q Consensus 100 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 179 (566)
..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 77889999999999999988666667888899999999999888555556788889999999999888666667888888
Q ss_pred cceeeccccccccch-hhhhCCCCCcEEEcccCcCc
Q 040451 180 LISFNVARNQFSGMI-PLIYNISSLQYIFIHTNRFH 214 (566)
Q Consensus 180 L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~ 214 (566)
|+.|++++|.+...+ ..+..+++|++|++++|++.
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 888888888877665 34556666666666666654
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=5.8e-22 Score=190.33 Aligned_cols=227 Identities=20% Similarity=0.198 Sum_probs=133.4
Q ss_pred CCCCEEEcccCccccccchhHhh--ccccccEEEccccCccCccchhh--hccCCCCEEecCCccccccch----hhccC
Q 040451 304 TKLEVLDLHSNRFGGVLPFSLAN--LSITMTEIANGSNQISGTIPDVI--ANLVNLNALGVESNQLAGTIP----LAIGE 375 (566)
Q Consensus 304 ~~L~~L~l~~~~~~~~~~~~~~~--~~~~l~~l~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~----~~~~~ 375 (566)
..++.+.+.++.+.......+.. ....+++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 35677777776655322211111 01235555555555554444444 455555555555555543211 22234
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceec--C--CccccCCCCCcEEEccCCcccccCchhhhccCCc
Q 040451 376 LKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGK--I--PPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITL 451 (566)
Q Consensus 376 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~--~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 451 (566)
+++|++|++++|.+.+..+..+..+++|++|++++|++.+. . +..+..+++|++|
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L--------------------- 202 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNL--------------------- 202 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSC---------------------
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEE---------------------
Confidence 45555555555555444444455555555555555544321 1 1112344444444
Q ss_pred CcEEEccCCcceecCC--c-cccCCCCCCEEEccCCcccccCCcCCcCC---CCCcEEeCCCCcccccCCcCCCCCCCCC
Q 040451 452 PVLLDLSDNLLNGHFP--A-EVGNLKNLVSLDISSNMFSGEIPTTLGGC---TSLEYLGMQDNSFTRSIPSTLSSLKSIT 525 (566)
Q Consensus 452 l~~L~l~~~~~~~~~~--~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 525 (566)
++++|.+..... . .+..+++|++|++++|.+.+..|..+..+ ++|++|++++|+++ .+|..+. ++|+
T Consensus 203 ----~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~ 275 (310)
T 4glp_A 203 ----ALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLR 275 (310)
T ss_dssp ----BCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCS
T ss_pred ----ECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCC
Confidence 555554431111 1 24677889999999999986667666666 69999999999998 5676664 7999
Q ss_pred EEeCCCCcccccCCccCcCCCCCCeeeCCCCcCcc
Q 040451 526 ELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEG 560 (566)
Q Consensus 526 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 560 (566)
.|++++|++++. |. +..+++|+.|++++|++++
T Consensus 276 ~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 276 VLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred EEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 999999999854 33 5778899999999999875
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=1.7e-22 Score=196.82 Aligned_cols=230 Identities=16% Similarity=0.164 Sum_probs=135.0
Q ss_pred cccEEEccccCccCccchhhhccCCCCEEecCCcccccc-chhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 040451 330 TMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGT-IPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLIL 408 (566)
Q Consensus 330 ~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 408 (566)
.++.+++.++.+.+..+. +..+++|+.|++++|.+++. .+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 71 ~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 444444444444443333 33556666666666666543 4555566666666666666666555556666666666666
Q ss_pred ccC-cceec-CCccccCCCCCcEEEccCC-ccccc-CchhhhccCCcCcEEEccCC--cce-ecCCccccCCCCCCEEEc
Q 040451 409 EVN-NLQGK-IPPSIGNCQNLILLTTRKN-KLSGT-VPRQLLHIITLPVLLDLSDN--LLN-GHFPAEVGNLKNLVSLDI 481 (566)
Q Consensus 409 ~~~-~l~~~-~~~~~~~~~~L~~L~l~~~-~l~~~-~~~~~~~~~~~l~~L~l~~~--~~~-~~~~~~l~~~~~L~~L~l 481 (566)
++| .+++. ++..+..+++|++|++++| .+++. ++..+..++..++.|++++| .+. ...+..+..+++|++|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 666 45432 3444556666666666666 55543 34444444413366677666 333 233444566777777777
Q ss_pred cCCc-ccccCCcCCcCCCCCcEEeCCCCc-ccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCC-CCCCeeeCCCCcC
Q 040451 482 SSNM-FSGEIPTTLGGCTSLEYLGMQDNS-FTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENL-SFLSFLNLSYNHF 558 (566)
Q Consensus 482 ~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~-~~L~~L~l~~~~l 558 (566)
++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++| +. .+.+..+ .+++.|++++|.+
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l 305 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHF 305 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCS
T ss_pred CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccC
Confidence 7777 555555667777777777777773 33332234666777777777777 33 1223333 3466677777777
Q ss_pred cccCCC
Q 040451 559 EGKVPI 564 (566)
Q Consensus 559 ~~~~p~ 564 (566)
++..|.
T Consensus 306 ~~~~~~ 311 (336)
T 2ast_B 306 TTIARP 311 (336)
T ss_dssp CCTTCS
T ss_pred ccccCC
Confidence 776663
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=4.6e-23 Score=202.54 Aligned_cols=252 Identities=19% Similarity=0.182 Sum_probs=138.2
Q ss_pred EECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccc----hhHhhccccccEEEccccCccCccchhhhcc--
Q 040451 279 LNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLP----FSLANLSITMTEIANGSNQISGTIPDVIANL-- 352 (566)
Q Consensus 279 L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l-- 352 (566)
+.++.+.+.+..+ ..+...++|++|++++|.+++..+ ..+...+.++++|++++|.+.+..+..+..+
T Consensus 3 ~~ls~n~~~~~~~------~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 76 (362)
T 3goz_A 3 YKLTLHPGSNPVE------EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76 (362)
T ss_dssp EECCCCTTCCHHH------HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHH
T ss_pred cccccccchHHHH------HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHh
Confidence 4566666554322 344455568888888888876665 3444443367777777777766555555553
Q ss_pred ---CCCCEEecCCccccccchhh----ccCC-CCCCEEEccCCcccccCCccc----cC-CCCCCeEecccCcceecCC-
Q 040451 353 ---VNLNALGVESNQLAGTIPLA----IGEL-KSLQMLFLNENFLRGTIPSSL----GN-LTLLTQLILEVNNLQGKIP- 418 (566)
Q Consensus 353 ---~~L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~~~~----~~-l~~L~~L~l~~~~l~~~~~- 418 (566)
++|++|++++|.+++..+.. +..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.++....
T Consensus 77 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 156 (362)
T 3goz_A 77 AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD 156 (362)
T ss_dssp TSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH
T ss_pred ccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH
Confidence 66777777777766554442 3333 667777777777664443332 22 2467777777776653222
Q ss_pred ---ccccCCC-CCcEEEccCCcccccCchhhhc----cCCcCcEEEccCCcceec----CCccccC-CCCCCEEEccCCc
Q 040451 419 ---PSIGNCQ-NLILLTTRKNKLSGTVPRQLLH----IITLPVLLDLSDNLLNGH----FPAEVGN-LKNLVSLDISSNM 485 (566)
Q Consensus 419 ---~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~----~~~~l~~L~l~~~~~~~~----~~~~l~~-~~~L~~L~l~~~~ 485 (566)
..+..++ +|++|++++|.+++..+..+.. .+..++.|++++|.+.+. ++..+.. .++|++|++++|.
T Consensus 157 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 157 ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 2233443 6677777777666444433322 222336666666665542 1222332 3456666666666
Q ss_pred ccccCC----cCCcCCCCCcEEeCCCCcccc-------cCCcCCCCCCCCCEEeCCCCcccc
Q 040451 486 FSGEIP----TTLGGCTSLEYLGMQDNSFTR-------SIPSTLSSLKSITELDLSRNNLSG 536 (566)
Q Consensus 486 ~~~~~~----~~~~~~~~L~~L~l~~~~~~~-------~~~~~l~~l~~L~~L~l~~n~~~~ 536 (566)
+.+..+ ..+..+++|++|++++|.+.+ ..+..+..+++|+.||+++|++..
T Consensus 237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 653322 234555566666666665322 122344555566666666666553
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=3.7e-23 Score=205.36 Aligned_cols=254 Identities=18% Similarity=0.246 Sum_probs=130.5
Q ss_pred ccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccc---cccchhHhhccccccEEEccccCccCc
Q 040451 268 INFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFG---GVLPFSLANLSITMTEIANGSNQISGT 344 (566)
Q Consensus 268 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~ 344 (566)
..+..+++|+.|++++|.+....+. .+...+..+++|++|++++|.+. +..|..+..
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~--~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~------------------ 85 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAAR--WLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL------------------ 85 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHH--HHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHH------------------
T ss_pred HHHhcCCCccEEECCCCCCCHHHHH--HHHHHHHhCCCccEEeCcccccCccccchhHHHHH------------------
Confidence 3345556666666666655433221 11123455666666666664322 222222211
Q ss_pred cchhhhccCCCCEEecCCccccc----cchhhccCCCCCCEEEccCCcccccCCccc----cCC---------CCCCeEe
Q 040451 345 IPDVIANLVNLNALGVESNQLAG----TIPLAIGELKSLQMLFLNENFLRGTIPSSL----GNL---------TLLTQLI 407 (566)
Q Consensus 345 ~~~~l~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~l---------~~L~~L~ 407 (566)
+...+..+++|+.|++++|.+.. .++..+..+++|++|++++|.+++..+..+ ..+ ++|++|+
T Consensus 86 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~ 165 (386)
T 2ca6_A 86 LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII 165 (386)
T ss_dssp HHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred HHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEE
Confidence 11334566777777777776665 244556666777777777776653322222 222 6666666
Q ss_pred cccCcce-ecCC---ccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccC
Q 040451 408 LEVNNLQ-GKIP---PSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISS 483 (566)
Q Consensus 408 l~~~~l~-~~~~---~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 483 (566)
+++|+++ ...+ ..+..+++|++|++++|.+.+..... ..+..+..+++|+.|++++
T Consensus 166 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~--------------------l~~~~l~~~~~L~~L~Ls~ 225 (386)
T 2ca6_A 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH--------------------LLLEGLAYCQELKVLDLQD 225 (386)
T ss_dssp CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHH--------------------HHHTTGGGCTTCCEEECCS
T ss_pred CCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHH--------------------HHHHHhhcCCCccEEECcC
Confidence 6666664 2222 24445566666666666554211000 1111345555666666666
Q ss_pred Cccc----ccCCcCCcCCCCCcEEeCCCCccccc----CCcCC--CCCCCCCEEeCCCCcccc----cCCccC-cCCCCC
Q 040451 484 NMFS----GEIPTTLGGCTSLEYLGMQDNSFTRS----IPSTL--SSLKSITELDLSRNNLSG----HIPQYL-ENLSFL 548 (566)
Q Consensus 484 ~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l--~~l~~L~~L~l~~n~~~~----~~~~~l-~~~~~L 548 (566)
|.++ ..++..+..+++|++|+|++|.+++. ++..+ ..+++|+.|++++|.++. .+|..+ .++++|
T Consensus 226 n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L 305 (386)
T 2ca6_A 226 NTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 305 (386)
T ss_dssp SCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTC
T ss_pred CCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCc
Confidence 6553 23444555556666666666655543 23333 225566666666666654 244444 345566
Q ss_pred CeeeCCCCcCccc
Q 040451 549 SFLNLSYNHFEGK 561 (566)
Q Consensus 549 ~~L~l~~~~l~~~ 561 (566)
+.|++++|++++.
T Consensus 306 ~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 306 LFLELNGNRFSEE 318 (386)
T ss_dssp CEEECTTSBSCTT
T ss_pred eEEEccCCcCCcc
Confidence 6666666665544
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=1.1e-22 Score=199.92 Aligned_cols=154 Identities=18% Similarity=0.264 Sum_probs=83.2
Q ss_pred EEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccC----ccccCCC-CCCEEeCCCccCCCCCCcccccC-----CCC
Q 040451 39 LDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIP----HEVSNLF-RLQNLTLTNNYFSGKILTDLSHC-----SNV 108 (566)
Q Consensus 39 l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L 108 (566)
++++.+++.+.+|..+...++|++|+|++|.+.+..+ ..+..++ +|++|++++|.++...+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4566666666666655555567777777776664433 4455666 66777777666665444444443 666
Q ss_pred CEEEccCCcccccCCccc----cCC-CCCCEEecccCcCCCCCchhhc----C-CCCCCEEEeeCCcccccCcc----cc
Q 040451 109 MKFEASNNKLEAEIPVEI----GNL-LMLQILNIAENHLKGQLPASIG----N-LSALQEIDVRGNRLGGRIPS----TI 174 (566)
Q Consensus 109 ~~L~L~~~~~~~~~~~~~----~~l-~~L~~L~l~~~~i~~~~~~~l~----~-l~~L~~L~l~~~~~~~~~~~----~l 174 (566)
++|++++|.+++..+..+ ..+ ++|++|++++|.++...+..+. . .++|++|++++|.+.+..+. .+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 666666666654433322 233 5566666666666543333322 2 24566666666655532222 22
Q ss_pred cccC-ccceeecccccccc
Q 040451 175 SHVR-NLISFNVARNQFSG 192 (566)
Q Consensus 175 ~~l~-~L~~L~l~~~~~~~ 192 (566)
..++ +|+.|++++|.+.+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HTSCTTCCEEECTTSCGGG
T ss_pred hcCCccccEeeecCCCCch
Confidence 2232 55555555555443
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=1.2e-20 Score=177.45 Aligned_cols=203 Identities=19% Similarity=0.243 Sum_probs=172.3
Q ss_pred CCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEcc
Q 040451 354 NLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTR 433 (566)
Q Consensus 354 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 433 (566)
.+..+++.++.+.+. .....+++|++|++++|.++ .. ..+..+++|++|++++|.+++. ..+..+++|++|+++
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence 444566666665543 23456889999999999987 33 3578899999999999999853 478899999999999
Q ss_pred CCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCccccc
Q 040451 434 KNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRS 513 (566)
Q Consensus 434 ~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 513 (566)
+|.+.+..+..+..+..+ +.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++.
T Consensus 94 ~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNL-KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp TSCCCCCCTTTTTTCTTC-CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCccCccChhHhcCCcCC-CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence 999985444445555554 9999999999987777789999999999999999977777789999999999999999987
Q ss_pred CCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCcccCC
Q 040451 514 IPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVP 563 (566)
Q Consensus 514 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p 563 (566)
.+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 77778999999999999999998888888999999999999999998876
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=4.2e-21 Score=177.02 Aligned_cols=197 Identities=19% Similarity=0.225 Sum_probs=142.7
Q ss_pred CCCEEecCCccccccchhhccCCCCCCEEEccCCc-ccccCCccccCCCCCCeEeccc-CcceecCCccccCCCCCcEEE
Q 040451 354 NLNALGVESNQLAGTIPLAIGELKSLQMLFLNENF-LRGTIPSSLGNLTLLTQLILEV-NNLQGKIPPSIGNCQNLILLT 431 (566)
Q Consensus 354 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~L~ 431 (566)
+++.|++++|.+++..+..+..+++|++|++++|. +++..+..+..+++|++|++++ |++++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56667777666665555566666777777777775 6544445666677777777776 666655556666677777777
Q ss_pred ccCCcccccCchhhhccCCcCc---EEEccCC-cceecCCccccCCCCCC-EEEccCCcccccCCcCCcCCCCCcEEeCC
Q 040451 432 TRKNKLSGTVPRQLLHIITLPV---LLDLSDN-LLNGHFPAEVGNLKNLV-SLDISSNMFSGEIPTTLGGCTSLEYLGMQ 506 (566)
Q Consensus 432 l~~~~l~~~~~~~~~~~~~~l~---~L~l~~~-~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 506 (566)
+++|.+.+ +|. +..+..+ + .|++++| .+.+..+..|..+++|+ +|++++|.++...+..+.. ++|++|+++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L-~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYST-DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBC-CSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred CCCCCCcc-ccc-ccccccc-ccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 77776663 444 3333333 4 7788888 77766667789999999 9999999998444445555 899999999
Q ss_pred CCc-ccccCCcCCCCC-CCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCc
Q 040451 507 DNS-FTRSIPSTLSSL-KSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNH 557 (566)
Q Consensus 507 ~~~-~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~ 557 (566)
+|+ ++...+..|..+ ++|+.|++++|+++.. |.. .+++|+.|+++++.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC-
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCcc
Confidence 995 987777889999 9999999999999854 433 56899999999874
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=3.7e-21 Score=184.74 Aligned_cols=224 Identities=14% Similarity=0.127 Sum_probs=146.5
Q ss_pred CCCcEEEcCCCCCccc-cCc--cccCCCCCCEEeCCCccCCCCCCccc--ccCCCCCEEEccCCcccccCC----ccccC
Q 040451 58 SFPRSINLPNKSFRGE-IPH--EVSNLFRLQNLTLTNNYFSGKILTDL--SHCSNVMKFEASNNKLEAEIP----VEIGN 128 (566)
Q Consensus 58 ~~L~~L~L~~~~~~~~-~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~L~~~~~~~~~~----~~~~~ 128 (566)
..++.+.+.++.+... +.. .+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+.+..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3567777777776532 111 12234568888888888877777776 788888888888888775433 33456
Q ss_pred CCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCccccc--C--cccccccCccceeeccccccccchh----hhhCC
Q 040451 129 LLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGR--I--PSTISHVRNLISFNVARNQFSGMIP----LIYNI 200 (566)
Q Consensus 129 l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~--~--~~~l~~l~~L~~L~l~~~~~~~~~~----~l~~~ 200 (566)
+++|++|++++|++++..+..+..+++|++|++++|++.+. . +..+..+++|++|++++|.+..... .+..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 77888888888888766667778888888888888876531 1 2223577888888888888765442 24567
Q ss_pred CCCcEEEcccCcCcccCCccccCCC---CCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCC
Q 040451 201 SSLQYIFIHTNRFHGSLPLDNGVNL---PNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLS 277 (566)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 277 (566)
++|++|++++|.+.+..|..+. .+ ++|++|++++|.++ ..|..+. ++|+.|++++|.+++. +. +..+++|+
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~-~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAP-RCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCS-SCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCEEECCCCCCCccchhhHH-hccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 7888888888877755554444 22 57777777777766 3344332 5666666666666532 22 45556666
Q ss_pred EEECCCCcCC
Q 040451 278 RLNLGENNLG 287 (566)
Q Consensus 278 ~L~l~~~~~~ 287 (566)
.|++++|.+.
T Consensus 298 ~L~L~~N~l~ 307 (310)
T 4glp_A 298 NLTLDGNPFL 307 (310)
T ss_dssp CEECSSTTTS
T ss_pred EEECcCCCCC
Confidence 6666666553
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=1.8e-20 Score=173.95 Aligned_cols=180 Identities=19% Similarity=0.182 Sum_probs=117.7
Q ss_pred CCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEc
Q 040451 353 VNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTT 432 (566)
Q Consensus 353 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 432 (566)
...+.++++++.++ .+|..+. +++++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 34567888888777 3444443 57888888888888777777888888888888888888777777888888888888
Q ss_pred cCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccc
Q 040451 433 RKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTR 512 (566)
Q Consensus 433 ~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 512 (566)
++|.+.+..+..+..+. .++.|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++++|++++
T Consensus 91 ~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLT-QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp TTSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcccccChhHhcccC-CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 88887733323333333 33666666666665444445556666666666666654444456666666666666666665
Q ss_pred cCCcCCCCCCCCCEEeCCCCcccc
Q 040451 513 SIPSTLSSLKSITELDLSRNNLSG 536 (566)
Q Consensus 513 ~~~~~l~~l~~L~~L~l~~n~~~~ 536 (566)
..+..+..+++|+.|++++|++..
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeC
Confidence 444555666666666666666653
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=1.3e-20 Score=173.63 Aligned_cols=151 Identities=17% Similarity=0.255 Sum_probs=105.2
Q ss_pred CCcEEEcCCCCCccccCccccCCCCCCEEeCCCcc-CCCCCCcccccCCCCCEEEccC-CcccccCCccccCCCCCCEEe
Q 040451 59 FPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNY-FSGKILTDLSHCSNVMKFEASN-NKLEAEIPVEIGNLLMLQILN 136 (566)
Q Consensus 59 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~ 136 (566)
+|++|++++|.+++..+..+..+++|++|++++|. ++...+..|..+++|++|++++ |.++...+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 78888888888885455567888888888888886 7655556778888888888887 777755556777888888888
Q ss_pred cccCcCCCCCchhhcCCCCCC---EEEeeCC-cccccCcccccccCccc-eeeccccccccchhhhhCCCCCcEEEcccC
Q 040451 137 IAENHLKGQLPASIGNLSALQ---EIDVRGN-RLGGRIPSTISHVRNLI-SFNVARNQFSGMIPLIYNISSLQYIFIHTN 211 (566)
Q Consensus 137 l~~~~i~~~~~~~l~~l~~L~---~L~l~~~-~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~ 211 (566)
+++|+++ .+|. +..+++|+ +|++++| .+....+..+.++++|+ .|++++|.+...+......++|++|++++|
T Consensus 112 l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n 189 (239)
T 2xwt_C 112 IFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN 189 (239)
T ss_dssp EEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTC
T ss_pred CCCCCCc-cccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCC
Confidence 8888877 3555 67777777 8888877 77655555566777777 777766666544432222244444444444
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=2.2e-22 Score=199.83 Aligned_cols=193 Identities=21% Similarity=0.256 Sum_probs=101.8
Q ss_pred cCCCCCCEEecccCcCCC----CCchhhcCCCCCCEEEeeCCcccccCcccc----ccc---------Cccceeeccccc
Q 040451 127 GNLLMLQILNIAENHLKG----QLPASIGNLSALQEIDVRGNRLGGRIPSTI----SHV---------RNLISFNVARNQ 189 (566)
Q Consensus 127 ~~l~~L~~L~l~~~~i~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l----~~l---------~~L~~L~l~~~~ 189 (566)
.++++|++|++++|.++. .++..+..+++|++|++++|.+....+..+ ..+ ++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 445555555555555553 234444555555555555555542222222 222 555555555555
Q ss_pred cccch-----hhhhCCCCCcEEEcccCcCccc----CCccccCCCCCccEEEccCCccc----cccccccccCCCCceEe
Q 040451 190 FSGMI-----PLIYNISSLQYIFIHTNRFHGS----LPLDNGVNLPNLRYFSISGNNLT----GSLQDSLSNATNLQGLE 256 (566)
Q Consensus 190 ~~~~~-----~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~ 256 (566)
+.... ..+..+++|++|++++|.+... +.......+++|++|++++|.++ ...+..+..+++|+.|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 54211 2344555666666666655421 11111125666667777666664 33455566667777777
Q ss_pred ccccccccc----cccccc--CCCCCCEEECCCCcCCCCCCCChhhhhhh-cCCCCCCEEEcccCccccccc
Q 040451 257 INGNLFSGK----VSINFS--RLQNLSRLNLGENNLGTGTANDLDFITLL-TNCTKLEVLDLHSNRFGGVLP 321 (566)
Q Consensus 257 l~~~~~~~~----~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~ 321 (566)
+++|.+.+. .+..+. .+++|+.|++++|.+...... .+...+ ..+++|++|++++|.+++..+
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~--~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR--TLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH--HHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHH--HHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 777766543 233332 267777777777776542110 111233 456778888888887776553
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=2.1e-20 Score=178.89 Aligned_cols=194 Identities=20% Similarity=0.306 Sum_probs=130.0
Q ss_pred CcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCC
Q 040451 54 VGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQ 133 (566)
Q Consensus 54 l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~ 133 (566)
..++++|++|+++++.+. .++ .+..+++|++|++++|.++.. +. +..+++|++|++++|.+.+ + ..+.++++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCC
Confidence 355677778888777776 455 467777788888887777643 33 7777777778777777763 3 3577777777
Q ss_pred EEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcC
Q 040451 134 ILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRF 213 (566)
Q Consensus 134 ~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 213 (566)
+|++++|++++ ++ .+..+++|++|++++|.+.+. +. +..+++|+.|++++|.+.+... +..+++|++|++++|.+
T Consensus 111 ~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 111 TLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred EEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCcc
Confidence 77777777773 33 377777777777777777633 22 6677777777777777765544 66667777777777766
Q ss_pred cccCCccccCCCCCccEEEccCCccccccccccccCCCCceEeccccccc
Q 040451 214 HGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFS 263 (566)
Q Consensus 214 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 263 (566)
.+ ++. ...+++|++|++++|.+.... .+..+++|+.|++++|.++
T Consensus 186 ~~-~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 186 SD-ISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CC-CGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred Cc-Chh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 53 222 225666777777777666443 2566667777777766665
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=2e-20 Score=179.12 Aligned_cols=191 Identities=19% Similarity=0.298 Sum_probs=125.6
Q ss_pred ccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 040451 329 ITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLIL 408 (566)
Q Consensus 329 ~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 408 (566)
..++.|+++++.+.. ++ .+..+++|+.|++++|.+++..+ +..+++|++|++++|.+++ + ..+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEEC
Confidence 467777777777664 23 46677777777777777765433 6777777777777777763 2 35677777777777
Q ss_pred ccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccc
Q 040451 409 EVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSG 488 (566)
Q Consensus 409 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 488 (566)
++|.+++. + .+..+++|+.|++++|.+.+ ++. +..+..+ +.|++++|.+.+..+ +..+++|+.|++++|.+++
T Consensus 115 ~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L-~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 115 TSTQITDV-T-PLAGLSNLQVLYLDLNQITN-ISP-LAGLTNL-QYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp TTSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTC-CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCc-h-hhcCCCCCCEEECCCCccCc-Ccc-ccCCCCc-cEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence 77777642 2 36777777777777777763 222 3344333 777777777664322 6667777777777777763
Q ss_pred cCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccc
Q 040451 489 EIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSG 536 (566)
Q Consensus 489 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 536 (566)
. +. +..+++|++|++++|++++.. .+..+++|+.|++++|+++.
T Consensus 188 ~-~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 188 I-SP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp C-GG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred C-hh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 2 22 666677777777777776433 26667777777777777663
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=1.1e-20 Score=193.73 Aligned_cols=211 Identities=18% Similarity=0.280 Sum_probs=161.0
Q ss_pred CCCCCCCCCCCCCCC-----CcccC-ccCCCCCcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCC
Q 040451 8 PLGVTSSWNNSINLC-----QWTGV-TCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNL 81 (566)
Q Consensus 8 ~~~~~~~w~~~~~~c-----~w~~~-~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l 81 (566)
+.+...+|..+...| .|.++ .|.. .+++.|+++++++.+ +|..+ +++|++|+|++|.++ .+| ..+
T Consensus 29 ~~~~l~~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l 99 (571)
T 3cvr_A 29 YFSAWDKWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELP 99 (571)
T ss_dssp HHHHHHHHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCC
T ss_pred HHHHHHHHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---ccc
Confidence 334566788777888 79988 6753 579999999999986 66655 388999999999998 788 457
Q ss_pred CCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEe
Q 040451 82 FRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDV 161 (566)
Q Consensus 82 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l 161 (566)
++|++|++++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++
T Consensus 100 ~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 167 (571)
T 3cvr_A 100 ASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSV 167 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEEC
Confidence 899999999999985 565 554 99999999999985 665 67899999999999984 665 5788999999
Q ss_pred eCCcccccCcccccccCccceeeccccccccchhhhhCCCCC-------cEEEcccCcCcccCCccccCCCCCccEEEcc
Q 040451 162 RGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSL-------QYIFIHTNRFHGSLPLDNGVNLPNLRYFSIS 234 (566)
Q Consensus 162 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 234 (566)
++|.+++ +|. +. ++|+.|++++|.+..++. +.. +| +.|++++|.+. .+|..++ .+++|+.|+++
T Consensus 168 s~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~-~l~~L~~L~L~ 238 (571)
T 3cvr_A 168 RNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENIL-SLDPTCTIILE 238 (571)
T ss_dssp CSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCC-CCCGGGG-GSCTTEEEECC
T ss_pred CCCCCCC-cch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcce-ecCHHHh-cCCCCCEEEee
Confidence 9999885 666 55 888889998888876555 332 55 77777777776 5666665 46777777777
Q ss_pred CCcccccccccccc
Q 040451 235 GNNLTGSLQDSLSN 248 (566)
Q Consensus 235 ~~~~~~~~~~~l~~ 248 (566)
+|.++...|..+..
T Consensus 239 ~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 239 DNPLSSRIRESLSQ 252 (571)
T ss_dssp SSSCCHHHHHHHHH
T ss_pred CCcCCCcCHHHHHH
Confidence 77776655555444
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=3.4e-19 Score=160.40 Aligned_cols=181 Identities=17% Similarity=0.198 Sum_probs=134.9
Q ss_pred CCCcccCccCCCCCcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCc
Q 040451 21 LCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILT 100 (566)
Q Consensus 21 ~c~w~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 100 (566)
.|.|.++.|.. +.+. .+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.++...+.
T Consensus 6 ~C~~~~v~c~~------------~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 70 (208)
T 2o6s_A 6 SCSGTTVECYS------------QGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG 70 (208)
T ss_dssp EEETTEEECCS------------SCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred EECCCEEEecC------------CCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChh
Confidence 46787777753 2332 233322 45889999999998855555678889999999999988865566
Q ss_pred ccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCcc
Q 040451 101 DLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNL 180 (566)
Q Consensus 101 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 180 (566)
.+..+++|++|++++|.+++..+..+.++++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|
T Consensus 71 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 150 (208)
T 2o6s_A 71 VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCc
Confidence 67888999999999998886555567888899999999988886555567888889999999888886555567788888
Q ss_pred ceeeccccccccchhhhhCCCCCcEEEcccCcCcccCCcccc
Q 040451 181 ISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNG 222 (566)
Q Consensus 181 ~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 222 (566)
+.|++++|.+. +.++.|+.|+++.|.+.+.+|..++
T Consensus 151 ~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 151 QYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp CEEECCSCCBC------CCTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred cEEEecCCCee------cCCCCHHHHHHHHHhCCceeeccCc
Confidence 88888888654 3456677777777777766665544
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=9.9e-19 Score=170.68 Aligned_cols=237 Identities=15% Similarity=0.089 Sum_probs=152.7
Q ss_pred EEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccC-ccccCCCCCCEEeCCCccCCCCCC-cccccCCCCCE-EEccC
Q 040451 39 LDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIP-HEVSNLFRLQNLTLTNNYFSGKIL-TDLSHCSNVMK-FEASN 115 (566)
Q Consensus 39 l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~-L~L~~ 115 (566)
++-++++++ .+|..+ .+++++|+|++|+++ .+| ++|.++++|++|+|++|.+...++ ..|.+++++++ +.+.+
T Consensus 14 v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 14 FLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 334455555 355544 357899999999988 555 468889999999999998754443 45788888775 55566
Q ss_pred CcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeC-CcccccCcccccccC-ccceeeccccccccc
Q 040451 116 NKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRG-NRLGGRIPSTISHVR-NLISFNVARNQFSGM 193 (566)
Q Consensus 116 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~ 193 (566)
|++....|..|.++++|++|++++|+++...+..+....++..+++.+ +.+....+..+..+. .++.|++++|.+..+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 788766677788888899999988888855555566667788888865 455544445555553 577788888877766
Q ss_pred hhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCC
Q 040451 194 IPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRL 273 (566)
Q Consensus 194 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 273 (566)
+...+...+|+++++.+++..+.+|...+..+++|++|++++|+++...+..+ ..|+.|.+.++......| .+..+
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP-~l~~l 245 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLP-TLEKL 245 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCC-CTTTC
T ss_pred ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCC-CchhC
Confidence 65555566777777765544446666655566777777777776664433333 334444443332222233 24455
Q ss_pred CCCCEEECCC
Q 040451 274 QNLSRLNLGE 283 (566)
Q Consensus 274 ~~L~~L~l~~ 283 (566)
++|+.+++.+
T Consensus 246 ~~L~~l~l~~ 255 (350)
T 4ay9_X 246 VALMEASLTY 255 (350)
T ss_dssp CSCCEEECSC
T ss_pred cChhhCcCCC
Confidence 5555555543
No 98
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=2.2e-18 Score=157.17 Aligned_cols=165 Identities=18% Similarity=0.207 Sum_probs=134.3
Q ss_pred CCCCCCCCCCCcccCccCCCCCcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCc
Q 040451 13 SSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNN 92 (566)
Q Consensus 13 ~~w~~~~~~c~w~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~ 92 (566)
--|..++..|.|.++.|.. +.+. .+|..+. ++|++|+|++|.+.+..+..+..+++|++|++++|
T Consensus 10 ~~~~~~~~~Cs~~~v~c~~------------~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N 74 (229)
T 3e6j_A 10 SAACPSQCSCSGTTVDCRS------------KRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN 74 (229)
T ss_dssp -CCCCTTCEEETTEEECTT------------SCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred hccCCCCCEEeCCEeEccC------------CCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC
Confidence 3466788999999988864 2232 3444333 88999999999999777888899999999999999
Q ss_pred cCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcc
Q 040451 93 YFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPS 172 (566)
Q Consensus 93 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 172 (566)
.++...+..+..+++|++|++++|.+++..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|.+....+.
T Consensus 75 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~ 153 (229)
T 3e6j_A 75 QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHG 153 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred CCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHH
Confidence 998655566889999999999999998666666788999999999999998 7888889999999999999998866666
Q ss_pred cccccCccceeeccccccccc
Q 040451 173 TISHVRNLISFNVARNQFSGM 193 (566)
Q Consensus 173 ~l~~l~~L~~L~l~~~~~~~~ 193 (566)
.+..+++|+.|++++|.+...
T Consensus 154 ~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TTTTCTTCCEEECTTSCBCTT
T ss_pred HHhCCCCCCEEEeeCCCccCC
Confidence 788888899999888887643
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=1.3e-18 Score=156.64 Aligned_cols=177 Identities=23% Similarity=0.209 Sum_probs=95.1
Q ss_pred CEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCC
Q 040451 356 NALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKN 435 (566)
Q Consensus 356 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 435 (566)
+.++.+++.++.. |.. ..++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~-p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSV-PTG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSC-CSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCC-CCC--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 4566666665532 322 2457888888888877555556677788888888888777555555677777777777777
Q ss_pred cccccCchh-hhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccC
Q 040451 436 KLSGTVPRQ-LLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSI 514 (566)
Q Consensus 436 ~l~~~~~~~-~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 514 (566)
.+. .++.. +..+.. ++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+
T Consensus 87 ~l~-~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-- 162 (208)
T 2o6s_A 87 QLQ-SLPNGVFDKLTQ-LKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-- 162 (208)
T ss_dssp CCC-CCCTTTTTTCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--
T ss_pred cCC-ccCHhHhcCccC-CCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--
Confidence 766 22222 222222 2444444444443333334444444444444444443333334444444444444443331
Q ss_pred CcCCCCCCCCCEEeCCCCcccccCCccCcC
Q 040451 515 PSTLSSLKSITELDLSRNNLSGHIPQYLEN 544 (566)
Q Consensus 515 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~ 544 (566)
.+++|+.|+++.|.+++.+|+.+..
T Consensus 163 -----~~~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 163 -----TCPGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp -----CTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred -----CCCCHHHHHHHHHhCCceeeccCcc
Confidence 2234444444444444444444443
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=4.1e-18 Score=166.32 Aligned_cols=220 Identities=17% Similarity=0.179 Sum_probs=123.1
Q ss_pred cccEEEccccCccCccchhhhccCCCCEEecCCccccccch-hhccCCCCCCE-EEccCCcccccCCccccCCCCCCeEe
Q 040451 330 TMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIP-LAIGELKSLQM-LFLNENFLRGTIPSSLGNLTLLTQLI 407 (566)
Q Consensus 330 ~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~-L~l~~~~~~~~~~~~~~~l~~L~~L~ 407 (566)
++++|++++|+++...+..|.++++|++|++++|.+.+.++ .+|.+++++.+ +.+++|+++...+..+..+++|++|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 45555555555543333456666777777777766644333 35566666554 44445666655566666677777777
Q ss_pred cccCcceecCCccccCCCCCcEEEccCC-cccccCch-hhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccC-C
Q 040451 408 LEVNNLQGKIPPSIGNCQNLILLTTRKN-KLSGTVPR-QLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISS-N 484 (566)
Q Consensus 408 l~~~~l~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~-~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-~ 484 (566)
+++|++....+..+.....+..+++.++ .+. .++. .+......++.|++++|.+....+..| ...+|++|++.+ |
T Consensus 111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n 188 (350)
T 4ay9_X 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNN 188 (350)
T ss_dssp EEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCT
T ss_pred ccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCC
Confidence 7777666544445555556666666553 333 3333 233344444667777777765444333 345667777764 4
Q ss_pred cccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCC
Q 040451 485 MFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSY 555 (566)
Q Consensus 485 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 555 (566)
.+....++.|.++++|++|++++|+++...+.++ .+|+.|.+.++.-.+.+|. +.++++|+.+++++
T Consensus 189 ~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp TCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred cccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 4543333456677777777777777764333333 4455555555443334442 55666777777654
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=4.6e-18 Score=174.43 Aligned_cols=186 Identities=25% Similarity=0.372 Sum_probs=106.2
Q ss_pred cccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 040451 330 TMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILE 409 (566)
Q Consensus 330 ~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 409 (566)
+++.|++++|.+.+ +|..+ +++|+.|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 56666666666664 44433 256666666666666 333 345666666666666663 444 333 66666666
Q ss_pred cCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCccccc
Q 040451 410 VNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGE 489 (566)
Q Consensus 410 ~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 489 (566)
+|++++ +|. .+++|+.|++++|.+++ +|. ..+.++.|++++|.+.+ +|. +. ++|+.|++++|.++ .
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 666664 333 45666666666666652 443 22334666666666654 333 43 56666666666666 4
Q ss_pred CCcCCcCCCCC-------cEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcC
Q 040451 490 IPTTLGGCTSL-------EYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLEN 544 (566)
Q Consensus 490 ~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~ 544 (566)
+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|++++.+|..+..
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 444 432 55 66666666666 35555555666666666666666555555443
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=6e-18 Score=160.31 Aligned_cols=171 Identities=19% Similarity=0.300 Sum_probs=86.8
Q ss_pred cCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCE
Q 040451 55 GNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQI 134 (566)
Q Consensus 55 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~ 134 (566)
.++++|++|++++|.+. .++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++ .+.++++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence 44555566666555554 333 25555555555555555553222 5555555555555555542 22 3555555555
Q ss_pred EecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCc
Q 040451 135 LNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFH 214 (566)
Q Consensus 135 L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 214 (566)
|++++|++++ + ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+.+..+ +.
T Consensus 117 L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~---------------- 175 (291)
T 1h6t_A 117 LSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LA---------------- 175 (291)
T ss_dssp EECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GT----------------
T ss_pred EECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hc----------------
Confidence 5555555552 2 3445555555555555555422 334445555555555554443332 33
Q ss_pred ccCCccccCCCCCccEEEccCCccccccccccccCCCCceEeccccccc
Q 040451 215 GSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFS 263 (566)
Q Consensus 215 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 263 (566)
.+++|++|++++|.++.. + .+..+++|+.|++++|.+.
T Consensus 176 ---------~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 176 ---------GLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp ---------TCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred ---------CCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 445555555555555432 1 2455555566666555554
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=2.6e-17 Score=149.03 Aligned_cols=151 Identities=19% Similarity=0.242 Sum_probs=92.0
Q ss_pred EEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCc
Q 040451 357 ALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNK 436 (566)
Q Consensus 357 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 436 (566)
.++++++.++. +|..+. +++++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.
T Consensus 15 ~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 44555554442 232221 455555555555554444445555555555555555554445555555555555554444
Q ss_pred ccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCc
Q 040451 437 LSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPS 516 (566)
Q Consensus 437 l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 516 (566)
+. ...+..|..+++|++|++++|.+....+..|..+++|++|+|++|.+++..+.
T Consensus 92 l~-------------------------~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 146 (220)
T 2v9t_B 92 IT-------------------------ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146 (220)
T ss_dssp CC-------------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred CC-------------------------ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH
Confidence 43 23333466777888888888888766677777788888888888888766666
Q ss_pred CCCCCCCCCEEeCCCCccc
Q 040451 517 TLSSLKSITELDLSRNNLS 535 (566)
Q Consensus 517 ~l~~l~~L~~L~l~~n~~~ 535 (566)
.|..+++|+.|++++|++.
T Consensus 147 ~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 147 TFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTTTCTTCCEEECCSSCEE
T ss_pred HHhCCCCCCEEEeCCCCcC
Confidence 6777788888888888775
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=1e-17 Score=158.76 Aligned_cols=175 Identities=22% Similarity=0.298 Sum_probs=113.0
Q ss_pred cCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCE
Q 040451 79 SNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQE 158 (566)
Q Consensus 79 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~ 158 (566)
..+++|++|++++|.++.. ..+..+++|++|++++|.+++. +. +.++++|++|++++|.+++ + ..+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-C-hhhccCCCCCE
Confidence 4556666667666666532 2356666666666666666532 22 6666666666666666652 2 23556666666
Q ss_pred EEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCcc
Q 040451 159 IDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNL 238 (566)
Q Consensus 159 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 238 (566)
|++++|.+.+. ..+..++ +|++|++++|.+.+ + .. ...+++|++|++++|.+
T Consensus 117 L~L~~n~i~~~--~~l~~l~-----------------------~L~~L~l~~n~l~~-~-~~-l~~l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLP-----------------------QLESLYLGNNKITD-I-TV-LSRLTKLDTLSLEDNQI 168 (291)
T ss_dssp EECTTSCCCCC--GGGGGCT-----------------------TCCEEECCSSCCCC-C-GG-GGGCTTCSEEECCSSCC
T ss_pred EECCCCcCCCC--hhhcCCC-----------------------CCCEEEccCCcCCc-c-hh-hccCCCCCEEEccCCcc
Confidence 66666655421 2344444 45555555554442 2 12 22678888888888888
Q ss_pred ccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCC
Q 040451 239 TGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTA 291 (566)
Q Consensus 239 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 291 (566)
.+..+ +..+++|+.|++++|.+++. + .+..+++|+.|++++|.+...+.
T Consensus 169 ~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 169 SDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECCCE
T ss_pred ccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCCcc
Confidence 76544 88899999999999999854 3 48899999999999998866443
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=1.7e-17 Score=150.13 Aligned_cols=152 Identities=19% Similarity=0.195 Sum_probs=92.1
Q ss_pred CEEEccCCcccccCCccccCCCCCCeEecccCcceecCC-ccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEcc
Q 040451 380 QMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIP-PSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLS 458 (566)
Q Consensus 380 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~ 458 (566)
++++++++.++ .+|..+. +.+++|++++|.+++..+ ..|..+++|+.|++++|.+++..+..+..+..+ +.|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L-~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV-NEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC-CEEECC
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC-CEEECC
Confidence 58899999887 5665543 567899999999886644 457788888888888888763333333333333 555555
Q ss_pred CCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCccc
Q 040451 459 DNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLS 535 (566)
Q Consensus 459 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 535 (566)
+|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|+|++|.+++..|..|..+++|+.|++++|++.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 55555444444555555555555555555444555555555555555555555444555555555555555555554
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=4.5e-17 Score=147.40 Aligned_cols=153 Identities=18% Similarity=0.197 Sum_probs=122.4
Q ss_pred EEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCc
Q 040451 38 GLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNK 117 (566)
Q Consensus 38 ~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 117 (566)
.++.+++.+.. +|..+. +++++|+|++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|+|++|.
T Consensus 15 ~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 45666666653 454443 688999999999885555678888999999999998887778888899999999999998
Q ss_pred ccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccc
Q 040451 118 LEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGM 193 (566)
Q Consensus 118 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 193 (566)
++...+..|.++++|++|++++|++++..+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+...
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 8855445578888999999999988877778888888999999999988866666788888888888888887643
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=9.5e-18 Score=149.29 Aligned_cols=152 Identities=16% Similarity=0.247 Sum_probs=101.3
Q ss_pred cCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCE
Q 040451 55 GNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQI 134 (566)
Q Consensus 55 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~ 134 (566)
+++++|++|++++|.+. .++ .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..++++++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 56677777777777776 555 4677777777777777554 2346677777777777777776656667777777777
Q ss_pred EecccCcCCCCCchhhcCCCCCCEEEeeCCc-ccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcC
Q 040451 135 LNIAENHLKGQLPASIGNLSALQEIDVRGNR-LGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRF 213 (566)
Q Consensus 135 L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 213 (566)
|++++|.+++..+..+..+++|++|++++|. +. .++ .+..+++|+.|++++|.+.+.. .+..+++|++|++++|++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence 7777777775566677777777777777776 44 333 4666677777777776666543 455555666666655554
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=1.7e-17 Score=162.58 Aligned_cols=176 Identities=24% Similarity=0.180 Sum_probs=115.3
Q ss_pred CEEecCCccccccchhhccCCCCCCEEEccCCcccccCCcccc-CCCCCCeEecccCcceecCCccccCCCCCcEEEccC
Q 040451 356 NALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLG-NLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRK 434 (566)
Q Consensus 356 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 434 (566)
+.++++++.++. +|..+ .+.++.|++++|.+++..+..+. .+++|++|++++|++++..+..|..+++|+.|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 456666666653 34333 24567777777777655555555 667777777777777665556666666666666666
Q ss_pred CcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccC
Q 040451 435 NKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSI 514 (566)
Q Consensus 435 ~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 514 (566)
|++. ...+..|..+++|+.|++++|.+....+..|..+++|++|+|++|.++...
T Consensus 98 N~l~-------------------------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 152 (361)
T 2xot_A 98 NHLH-------------------------TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152 (361)
T ss_dssp SCCC-------------------------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred CcCC-------------------------cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence 6654 333445667777777777777777666677777777888888777777543
Q ss_pred CcCC---CCCCCCCEEeCCCCcccccCCccCcCCCC--CCeeeCCCCcCc
Q 040451 515 PSTL---SSLKSITELDLSRNNLSGHIPQYLENLSF--LSFLNLSYNHFE 559 (566)
Q Consensus 515 ~~~l---~~l~~L~~L~l~~n~~~~~~~~~l~~~~~--L~~L~l~~~~l~ 559 (566)
+..| ..+++|+.|++++|+++...+..+..++. |+.|+|++|++.
T Consensus 153 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp GGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred HHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 3344 45777888888888777555556666665 477788877654
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=2.4e-17 Score=171.10 Aligned_cols=175 Identities=26% Similarity=0.367 Sum_probs=122.7
Q ss_pred hhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCc
Q 040451 349 IANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLI 428 (566)
Q Consensus 349 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 428 (566)
+..+++|+.|++++|.+... + .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+.+ + ..+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCC
Confidence 45667777777777776643 2 46677777777777777764333 6677777777777777763 2 2567777777
Q ss_pred EEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCC
Q 040451 429 LLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDN 508 (566)
Q Consensus 429 ~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 508 (566)
.|++++|.+.+ + ..+..++.+ +.|++++|.+.+. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|
T Consensus 113 ~L~Ls~N~l~~-l-~~l~~l~~L-~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 113 SLSLEHNGISD-I-NGLVHLPQL-ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp EEECTTSCCCC-C-GGGGGCTTC-SEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred EEEecCCCCCC-C-ccccCCCcc-CEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 77777777763 2 334444444 7777777777654 457788888888888888875444 778888888888888
Q ss_pred cccccCCcCCCCCCCCCEEeCCCCcccccC
Q 040451 509 SFTRSIPSTLSSLKSITELDLSRNNLSGHI 538 (566)
Q Consensus 509 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 538 (566)
++++. ..+..+++|+.|+|++|++....
T Consensus 186 ~i~~l--~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 186 HISDL--RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred CCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence 88753 35777888888888888877543
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=7.2e-17 Score=146.05 Aligned_cols=154 Identities=18% Similarity=0.214 Sum_probs=126.2
Q ss_pred EEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccC-ccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCC
Q 040451 38 GLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIP-HEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNN 116 (566)
Q Consensus 38 ~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~ 116 (566)
+++++++.++. +|..+. +.+++|+|++|.+++..+ ..+..+++|++|++++|.++...+..|..+++|++|++++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 68888888874 555443 456899999999885534 44788999999999999988766778889999999999999
Q ss_pred cccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccch
Q 040451 117 KLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMI 194 (566)
Q Consensus 117 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 194 (566)
.+++..+..|.++++|++|++++|++++..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+....
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 988766777888999999999999998777888888999999999999988777888888888888888888876543
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=3.4e-17 Score=170.01 Aligned_cols=173 Identities=18% Similarity=0.300 Sum_probs=111.3
Q ss_pred CcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCC
Q 040451 54 VGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQ 133 (566)
Q Consensus 54 l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~ 133 (566)
+.++++|++|++++|.+. .++ .+..+++|++|+|++|.+++..+ +..+++|++|+|++|.+.+ ++ .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence 456677777777777766 444 36677777777777777764332 6777777777777777663 33 567777777
Q ss_pred EEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcC
Q 040451 134 ILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRF 213 (566)
Q Consensus 134 ~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 213 (566)
+|++++|.+.. + ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus 113 ~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 113 SLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred EEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCC
Confidence 77777777763 2 3466777777777777776643 456666777777777776665544 56666666666666666
Q ss_pred cccCCccccCCCCCccEEEccCCcccc
Q 040451 214 HGSLPLDNGVNLPNLRYFSISGNNLTG 240 (566)
Q Consensus 214 ~~~~~~~~~~~~~~L~~L~l~~~~~~~ 240 (566)
.+ ++ .+ ..+++|+.|++++|.+..
T Consensus 188 ~~-l~-~l-~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 188 SD-LR-AL-AGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CB-CG-GG-TTCTTCSEEECCSEEEEC
T ss_pred CC-Ch-HH-ccCCCCCEEEccCCcCcC
Confidence 53 22 22 255666666666665553
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=2.7e-17 Score=146.38 Aligned_cols=151 Identities=14% Similarity=0.208 Sum_probs=131.5
Q ss_pred CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEc
Q 040451 34 QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEA 113 (566)
Q Consensus 34 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 113 (566)
.++++++++++.+. .++ .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 57899999999998 455 6899999999999999765 443 6889999999999999998778889999999999999
Q ss_pred cCCcccccCCccccCCCCCCEEecccCc-CCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeecccccccc
Q 040451 114 SNNKLEAEIPVEIGNLLMLQILNIAENH-LKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSG 192 (566)
Q Consensus 114 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 192 (566)
++|.+++..+..++++++|++|++++|. ++ .++ .+..+++|++|++++|.+.+ ++ .+..+++|+.|++++|++..
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 9999998788889999999999999998 66 555 78999999999999999984 33 78899999999999998764
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.71 E-value=7.3e-17 Score=158.07 Aligned_cols=174 Identities=15% Similarity=0.208 Sum_probs=125.7
Q ss_pred EEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCcccc-CCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCC
Q 040451 38 GLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVS-NLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNN 116 (566)
Q Consensus 38 ~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~ 116 (566)
.++++++.+.. +|..+. +.+++|+|++|.+++..+..+. ++++|++|++++|.++...+..|..+++|++|+|++|
T Consensus 22 ~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 57777777764 454443 4578888888888855555566 7888888888888887666677888888888888888
Q ss_pred cccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccc---cccCccceeeccccccccc
Q 040451 117 KLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTI---SHVRNLISFNVARNQFSGM 193 (566)
Q Consensus 117 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~~ 193 (566)
++....+..|.++++|++|++++|+++...+..+..+++|++|++++|.++...+..+ ..+++|+.|++++|.+...
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 8876556667888888888888888886667778888888888888888874333334 4577788888888777766
Q ss_pred h-hhhhCCCC--CcEEEcccCcCc
Q 040451 194 I-PLIYNISS--LQYIFIHTNRFH 214 (566)
Q Consensus 194 ~-~~l~~~~~--L~~L~l~~~~~~ 214 (566)
+ ..+..++. ++.|++++|++.
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CHHHhhhccHhhcceEEecCCCcc
Confidence 6 45555555 366666666654
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.71 E-value=1.5e-16 Score=144.95 Aligned_cols=155 Identities=23% Similarity=0.209 Sum_probs=116.9
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEE
Q 040451 377 KSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLD 456 (566)
Q Consensus 377 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~ 456 (566)
.+-+.++.+++.++ .+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+. .++...+...+.++.|+
T Consensus 19 Cs~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 19 CSGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp EETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred EeCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEE
Confidence 35678999998887 6666544 89999999999999888888999999999999999986 55544433333347777
Q ss_pred ccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccc
Q 040451 457 LSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSG 536 (566)
Q Consensus 457 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 536 (566)
+++|.+.+..+..|..+++|+.|++++|.++ .+|..+..+++|++|++++|+++...+..|..+++|+.|++++|++..
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 7777777665556677777777777777777 666667777777777777777776555667777777777777777763
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=2.4e-17 Score=153.59 Aligned_cols=165 Identities=24% Similarity=0.320 Sum_probs=85.1
Q ss_pred ccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccc
Q 040451 331 MTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEV 410 (566)
Q Consensus 331 l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 410 (566)
+..+++.++.+++.. .+..+++|+.|++++|.++.. + .+..+++|++|++++|++++..+ +..+++|++|++++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 344444455444322 345555555555555555532 2 44455555555555555553222 55555555555555
Q ss_pred CcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccC
Q 040451 411 NNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEI 490 (566)
Q Consensus 411 ~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 490 (566)
|++++ ++. +.. ++|+.|++++|.+ .+. ..+..+++|+.|++++|.+++ +
T Consensus 95 N~l~~-l~~-~~~-~~L~~L~L~~N~l-------------------------~~~--~~l~~l~~L~~L~Ls~N~i~~-~ 143 (263)
T 1xeu_A 95 NRLKN-LNG-IPS-ACLSRLFLDNNEL-------------------------RDT--DSLIHLKNLEILSIRNNKLKS-I 143 (263)
T ss_dssp SCCSC-CTT-CCC-SSCCEEECCSSCC-------------------------SBS--GGGTTCTTCCEEECTTSCCCB-C
T ss_pred CccCC-cCc-ccc-CcccEEEccCCcc-------------------------CCC--hhhcCcccccEEECCCCcCCC-C
Confidence 55543 221 111 4455555555544 432 235556666666666666653 2
Q ss_pred CcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCccc
Q 040451 491 PTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLS 535 (566)
Q Consensus 491 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 535 (566)
+ .+..+++|++|++++|++++. ..+..+++|+.|++++|++.
T Consensus 144 ~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 144 V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 2 355566666666666666543 44555666666666666655
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=6.2e-19 Score=181.94 Aligned_cols=122 Identities=16% Similarity=0.267 Sum_probs=87.0
Q ss_pred CCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEcc
Q 040451 155 ALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSIS 234 (566)
Q Consensus 155 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 234 (566)
.|+.|++++|.+++ +|. +..+++|+.|++++|.+..++..+..+++|+.|++++|.+++ +| .+. .+++|++|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~-~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-GVA-NLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-GGT-TCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-Cc-ccC-CCCCCcEEECC
Confidence 47777777777763 454 777777777777777777666677777777777777777773 55 333 77888888888
Q ss_pred CCcccccc-ccccccCCCCceEeccccccccccccc---ccCCCCCCEEEC
Q 040451 235 GNNLTGSL-QDSLSNATNLQGLEINGNLFSGKVSIN---FSRLQNLSRLNL 281 (566)
Q Consensus 235 ~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l 281 (566)
+|.++... |..+..+++|+.|++++|.+++..+.. +..+++|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 88887665 777888888888888888877554422 234677777753
No 117
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=2.1e-16 Score=152.79 Aligned_cols=103 Identities=17% Similarity=0.118 Sum_probs=58.2
Q ss_pred cCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCC-eEecccCcceecCCccccCCCCCcEE
Q 040451 352 LVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLT-QLILEVNNLQGKIPPSIGNCQNLILL 430 (566)
Q Consensus 352 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~-~L~l~~~~l~~~~~~~~~~~~~L~~L 430 (566)
+++|+.+++.+|.++.....+|.++.+|+++++.++ ++......|..+++|+ .+.+.+ .++...+.+|..|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 455566666555555555555555556666666554 4434444555555555 555555 4444444555555555555
Q ss_pred EccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEc
Q 040451 431 TTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDI 481 (566)
Q Consensus 431 ~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 481 (566)
++.++.+ ......+|.++++|+.++.
T Consensus 303 ~l~~n~i-------------------------~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKI-------------------------TTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCC-------------------------CEECTTTTCTTCCCCEEEC
T ss_pred EeCCCcc-------------------------CccchhhhcCCcchhhhcc
Confidence 5544444 3445556778888887764
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=5.9e-16 Score=149.67 Aligned_cols=265 Identities=12% Similarity=0.066 Sum_probs=184.9
Q ss_pred CCCCCCEEECCCCcCCCCCCCChhhhhhhcC-CCCCCEEEcccCccc--cccchhHhhccccccEEEccccCccCccchh
Q 040451 272 RLQNLSRLNLGENNLGTGTANDLDFITLLTN-CTKLEVLDLHSNRFG--GVLPFSLANLSITMTEIANGSNQISGTIPDV 348 (566)
Q Consensus 272 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~--~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 348 (566)
.+++++.|.++++- .. .++ ..+.. +++|+.|++++|++. ......+ +.+..+....+.+ ....
T Consensus 23 ~~~~l~~L~l~g~i-~~---~~~---~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~----~~~~~~~~~~~~I---~~~a 88 (329)
T 3sb4_A 23 EANSITHLTLTGKL-NA---EDF---RHLRDEFPSLKVLDISNAEIKMYSGKAGTY----PNGKFYIYMANFV---PAYA 88 (329)
T ss_dssp HHHHCSEEEEEEEE-CH---HHH---HHHHHSCTTCCEEEEEEEEECCEEESSSSS----GGGCCEEECTTEE---CTTT
T ss_pred hhCceeEEEEeccc-cH---HHH---HHHHHhhccCeEEecCcceeEEecCccccc----ccccccccccccc---CHHH
Confidence 35678888887642 11 111 23333 789999999999876 2211111 1122333333322 2345
Q ss_pred hhc--------cCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcc----eec
Q 040451 349 IAN--------LVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNL----QGK 416 (566)
Q Consensus 349 l~~--------l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l----~~~ 416 (566)
|.+ +++|+.+.+.+ .++.....+|.+|++|+++++.+|.+....+..|..+.++..+....... ...
T Consensus 89 F~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i 167 (329)
T 3sb4_A 89 FSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRW 167 (329)
T ss_dssp TEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTT
T ss_pred hcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccc
Confidence 666 99999999998 88877788899999999999999988767777888877777777665322 112
Q ss_pred CCccccCCCCCc-EEEccCCc------------------------ccccCchhhhccCCcCcEEEccCCcceecCCcccc
Q 040451 417 IPPSIGNCQNLI-LLTTRKNK------------------------LSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVG 471 (566)
Q Consensus 417 ~~~~~~~~~~L~-~L~l~~~~------------------------l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~ 471 (566)
...+|..+..|+ .+.+.... +.......+...+..++.+++++|++......+|.
T Consensus 168 ~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~ 247 (329)
T 3sb4_A 168 EHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFA 247 (329)
T ss_dssp TTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTT
T ss_pred cccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhh
Confidence 234455566665 33333211 00011112222245569999999999888888899
Q ss_pred CCCCCCEEEccCCcccccCCcCCcCCCCCc-EEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCe
Q 040451 472 NLKNLVSLDISSNMFSGEIPTTLGGCTSLE-YLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSF 550 (566)
Q Consensus 472 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 550 (566)
+|++|+++++++| +..+...+|.+|++|+ .+++.+ .++...+..|..|++|+.|++++|.+....+..|.++++|+.
T Consensus 248 ~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 248 QKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKL 325 (329)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCE
T ss_pred CCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhh
Confidence 9999999999998 7667778899999999 999988 777777788999999999999999998788888999999998
Q ss_pred eeC
Q 040451 551 LNL 553 (566)
Q Consensus 551 L~l 553 (566)
|+.
T Consensus 326 ly~ 328 (329)
T 3sb4_A 326 IYK 328 (329)
T ss_dssp EEC
T ss_pred hcc
Confidence 864
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=2.8e-16 Score=146.32 Aligned_cols=167 Identities=18% Similarity=0.326 Sum_probs=81.3
Q ss_pred CCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecc
Q 040451 59 FPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIA 138 (566)
Q Consensus 59 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~ 138 (566)
++..++++++.++ .++ .+..+++|++|++++|.++. .+ .+..+++|++|++++|.+.+ ++. +.++++|++|+++
T Consensus 20 ~l~~l~l~~~~i~-~~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVT-DLV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTT-SEE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCcc-ccc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECC
Confidence 3444444444444 222 24444555555555555442 22 34455555555555555542 222 5555555555555
Q ss_pred cCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCcccCC
Q 040451 139 ENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLP 218 (566)
Q Consensus 139 ~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 218 (566)
+|++++ ++.. .. ++|++|++++|.+++ + ..+..+++|+.|++++|.+.+.. .+..+++|++|++++|.+.+.
T Consensus 94 ~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 94 RNRLKN-LNGI-PS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp SSCCSC-CTTC-CC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC--
T ss_pred CCccCC-cCcc-cc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch--
Confidence 555542 2221 12 555555555555542 1 23455555555555555555442 444555555555555555533
Q ss_pred ccccCCCCCccEEEccCCcccc
Q 040451 219 LDNGVNLPNLRYFSISGNNLTG 240 (566)
Q Consensus 219 ~~~~~~~~~L~~L~l~~~~~~~ 240 (566)
.....+++|+.|++++|.+..
T Consensus 166 -~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEEEC
T ss_pred -HHhccCCCCCEEeCCCCcccC
Confidence 122256666666666666553
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=4.2e-17 Score=173.69 Aligned_cols=205 Identities=18% Similarity=0.209 Sum_probs=117.1
Q ss_pred CCCCCCCcccCccCCCCCcEEEEEcCCCCCcccCcccCcCCCCCcEEEcC-----CCCCccccCccccCCCCCCEEeCCC
Q 040451 17 NSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLP-----NKSFRGEIPHEVSNLFRLQNLTLTN 91 (566)
Q Consensus 17 ~~~~~c~w~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~-----~~~~~~~~~~~~~~l~~L~~L~l~~ 91 (566)
.+.....|.+..+.. +++++++|.++.+... +..+.....|+.+.+. .+.+. ..++.+..++.|++|+|++
T Consensus 158 ~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~ 233 (727)
T 4b8c_D 158 DSTPSGTATNSAVST--PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSN 233 (727)
T ss_dssp --------------------------------------------------------------------CCCCCCEEECTT
T ss_pred CCCccccCCCceecC--CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCC
Confidence 445567888777754 7899999998888753 3333333334443333 23333 4567788999999999999
Q ss_pred ccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCc
Q 040451 92 NYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIP 171 (566)
Q Consensus 92 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 171 (566)
|.+. .++..+..+++|++|+|++|.++ .+|..|+++++|++|+|++|.++ .+|..+..+++|++|+|++|.+. .+|
T Consensus 234 n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp 309 (727)
T 4b8c_D 234 LQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLP 309 (727)
T ss_dssp SCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCC
T ss_pred CCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccC
Confidence 9998 67777889999999999999998 88999999999999999999999 78999999999999999999997 778
Q ss_pred ccccccCccceeeccccccccch-hhhhCCC-CCcEEEcccCcCcccCCccccCCCCCccEEEccCC
Q 040451 172 STISHVRNLISFNVARNQFSGMI-PLIYNIS-SLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGN 236 (566)
Q Consensus 172 ~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 236 (566)
..|.++++|+.|++++|.+.+.. ..+.... .+..+++++|.+.+.+|. .|+.|+++.+
T Consensus 310 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-------~l~~l~l~~n 369 (727)
T 4b8c_D 310 WEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-------ERRFIEINTD 369 (727)
T ss_dssp SSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------C---------
T ss_pred hhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc-------ccceeEeecc
Confidence 88999999999999999998766 3333221 223467888888766653 4556666665
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=1.1e-15 Score=135.11 Aligned_cols=109 Identities=28% Similarity=0.393 Sum_probs=64.8
Q ss_pred cEEEccCCcceecCCc-cccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCC
Q 040451 453 VLLDLSDNLLNGHFPA-EVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSR 531 (566)
Q Consensus 453 ~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 531 (566)
+.|++++|.+.+..+. .+..+++|++|++++|.+++..|..|.++++|++|++++|++++..+..|..+++|+.|++++
T Consensus 32 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 111 (192)
T 1w8a_A 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD 111 (192)
T ss_dssp SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCS
T ss_pred CEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence 4445555554433332 255666666666666666655555666666666666666666655555566666666666666
Q ss_pred CcccccCCccCcCCCCCCeeeCCCCcCccc
Q 040451 532 NNLSGHIPQYLENLSFLSFLNLSYNHFEGK 561 (566)
Q Consensus 532 n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 561 (566)
|++++..|..+..+++|+.|++++|++.+.
T Consensus 112 N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 112 NQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp SCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 666655566666666666666666665543
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=5.8e-16 Score=133.94 Aligned_cols=107 Identities=22% Similarity=0.297 Sum_probs=44.4
Q ss_pred CCCcEEEcCCCCCc-cccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEe
Q 040451 58 SFPRSINLPNKSFR-GEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILN 136 (566)
Q Consensus 58 ~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 136 (566)
++|++|++++|.+. +.+|..+..+++|++|++++|.++.. ..+..+++|++|++++|.+.+.+|..+.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 34444444444443 33444344444444444444444322 3344444444444444444433333333344444444
Q ss_pred cccCcCCCCCc--hhhcCCCCCCEEEeeCCccc
Q 040451 137 IAENHLKGQLP--ASIGNLSALQEIDVRGNRLG 167 (566)
Q Consensus 137 l~~~~i~~~~~--~~l~~l~~L~~L~l~~~~~~ 167 (566)
+++|.+++ ++ ..+..+++|++|++++|.++
T Consensus 102 Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 102 LSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp CBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGG
T ss_pred ccCCccCc-chhHHHHhcCCCCCEEEeeCCcCc
Confidence 44444442 11 33344444444444444443
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=8.6e-16 Score=129.93 Aligned_cols=127 Identities=17% Similarity=0.192 Sum_probs=68.6
Q ss_pred CCCcEEEcCCCCCc-cccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEe
Q 040451 58 SFPRSINLPNKSFR-GEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILN 136 (566)
Q Consensus 58 ~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 136 (566)
++|++|++++|.+. +.+|..+..+++|++|++++|.++.. ..+..+++|++|++++|.+.+.+|..++++++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45566666666555 45555555566666666666655532 4455555555555555555544455555555566666
Q ss_pred cccCcCCCC-CchhhcCCCCCCEEEeeCCcccccCc---ccccccCccceeecc
Q 040451 137 IAENHLKGQ-LPASIGNLSALQEIDVRGNRLGGRIP---STISHVRNLISFNVA 186 (566)
Q Consensus 137 l~~~~i~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~ 186 (566)
+++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 665555521 12445555556666665555553322 234555555555543
No 124
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.62 E-value=5.4e-14 Score=139.47 Aligned_cols=330 Identities=11% Similarity=0.034 Sum_probs=197.6
Q ss_pred CcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCC
Q 040451 50 LSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNL 129 (566)
Q Consensus 50 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l 129 (566)
-..+|.++.+|+++.|..+ ++..-..+|.++++|+.+++.++ ++.....+|..|.+|+.+.+..+- ......+|.++
T Consensus 63 g~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l-~~i~~~aF~~~ 139 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLML-KSIGVEAFKGC 139 (394)
T ss_dssp CTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTC-CEECTTTTTTC
T ss_pred HHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCce-eeecceeeecc
Confidence 3457788888888888643 55333456888888888888765 443456677888888877776542 22344556666
Q ss_pred CCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccch-hhhhCCCCCcEEEc
Q 040451 130 LMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMI-PLIYNISSLQYIFI 208 (566)
Q Consensus 130 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l 208 (566)
..++....... ......+|..+.+|+.+.+..+. .......|.++.+|+.+.+..+ +.... ..+.++..|+.+.+
T Consensus 140 ~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~ 215 (394)
T 4fs7_A 140 DFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEF 215 (394)
T ss_dssp CCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCC
T ss_pred cccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeec
Confidence 54443333222 22345667788888888887653 3355566777888888887655 33333 55667777777766
Q ss_pred ccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCC
Q 040451 209 HTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGT 288 (566)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 288 (566)
..+... +....+ ....|+.+.+... ++.....++..+..++.+.+..+... .....|..+..++.+......+..
T Consensus 216 ~~~~~~--i~~~~~-~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~ 290 (394)
T 4fs7_A 216 PNSLYY--LGDFAL-SKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPE 290 (394)
T ss_dssp CTTCCE--ECTTTT-TTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECT
T ss_pred CCCceE--eehhhc-ccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeecc
Confidence 554332 222222 4456777766543 23344455666777777777655332 444556666666666655443321
Q ss_pred CCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCcccccc
Q 040451 289 GTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGT 368 (566)
Q Consensus 289 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 368 (566)
..+..+.+|+.+.+..+ +. ..-..+|.++.+|+.+.+.++ ++..
T Consensus 291 ---------~~F~~~~~L~~i~l~~~-i~-------------------------~I~~~aF~~c~~L~~i~lp~~-v~~I 334 (394)
T 4fs7_A 291 ---------KTFYGCSSLTEVKLLDS-VK-------------------------FIGEEAFESCTSLVSIDLPYL-VEEI 334 (394)
T ss_dssp ---------TTTTTCTTCCEEEECTT-CC-------------------------EECTTTTTTCTTCCEECCCTT-CCEE
T ss_pred ---------ccccccccccccccccc-cc-------------------------eechhhhcCCCCCCEEEeCCc-ccEE
Confidence 23455666666655432 11 112245667777777777543 5545
Q ss_pred chhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEE
Q 040451 369 IPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILL 430 (566)
Q Consensus 369 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L 430 (566)
...+|.+|.+|+.+++..+ ++.....+|..+++|+.+++..+ +. .+..+|..|++|+.+
T Consensus 335 ~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 335 GKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred hHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 5667777777888777665 55455667777777777777654 22 233566777776654
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=4.1e-15 Score=128.55 Aligned_cols=133 Identities=19% Similarity=0.196 Sum_probs=108.5
Q ss_pred CCCCCCEEeCCCccCC-CCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCE
Q 040451 80 NLFRLQNLTLTNNYFS-GKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQE 158 (566)
Q Consensus 80 ~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~ 158 (566)
..++|++|++++|.++ +.++..+..+++|++|++++|.+.+. ..++.+++|++|++++|++++.+|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3478999999999987 56777788999999999999998754 67888999999999999998667777778899999
Q ss_pred EEeeCCcccccC-cccccccCccceeeccccccccchh----hhhCCCCCcEEEcccCcCc
Q 040451 159 IDVRGNRLGGRI-PSTISHVRNLISFNVARNQFSGMIP----LIYNISSLQYIFIHTNRFH 214 (566)
Q Consensus 159 L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~ 214 (566)
|++++|.+++.. +..+..+++|+.|++++|.+...+. .+..+++|++|++++|...
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 999999887432 2677888888888888888887664 6677888888888877765
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=2.4e-17 Score=170.05 Aligned_cols=195 Identities=19% Similarity=0.178 Sum_probs=99.8
Q ss_pred ccCCCCEEecCCccccccchhhccCCCCCCEEEccCCc-------------ccccCCccccCCCCCCeEe-cccCcceec
Q 040451 351 NLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENF-------------LRGTIPSSLGNLTLLTQLI-LEVNNLQGK 416 (566)
Q Consensus 351 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~l~~~ 416 (566)
.+++|+.|++++|.++ .+|..++.+++|++|++++|. ..+..|..+..+++|+.|+ ++.+.+...
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 3455555555555554 445555555555555554442 2233444555555565555 343322100
Q ss_pred CCc-----ccc--CCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCccccc
Q 040451 417 IPP-----SIG--NCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGE 489 (566)
Q Consensus 417 ~~~-----~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 489 (566)
... .+. ....|+.|++++|.++ .+|. +..+..+ +.|++++|.+. .+|..++.+++|+.|++++|.+++
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~~l~~L-~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLV-THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN- 500 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GGGGTTC-CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred hhhhhhcccccccCccCceEEEecCCCCC-CCcC-ccccccC-cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-
Confidence 000 000 0113556666666655 2443 4443333 55666666555 445556666666666666666653
Q ss_pred CCcCCcCCCCCcEEeCCCCcccccC-CcCCCCCCCCCEEeCCCCcccccCCcc---CcCCCCCCeee
Q 040451 490 IPTTLGGCTSLEYLGMQDNSFTRSI-PSTLSSLKSITELDLSRNNLSGHIPQY---LENLSFLSFLN 552 (566)
Q Consensus 490 ~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~---l~~~~~L~~L~ 552 (566)
+| .++.+++|++|+|++|.+++.. |..+..+++|+.|++++|++++..+.. +..+++|+.|+
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 44 4566666666666666666543 556666666666666666665443321 12355666554
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.61 E-value=6.6e-15 Score=130.07 Aligned_cols=127 Identities=17% Similarity=0.229 Sum_probs=66.8
Q ss_pred EEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCc-cccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCC
Q 040451 38 GLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPH-EVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNN 116 (566)
Q Consensus 38 ~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~ 116 (566)
+++++++.++ .+|..+.. ++++|++++|.+.+..+. .+..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 12 ~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 12 TVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 4555555553 34433322 566666666665532222 2555556666666666555444555555555555555555
Q ss_pred cccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCccc
Q 040451 117 KLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLG 167 (566)
Q Consensus 117 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~ 167 (566)
++++..+..|.++++|++|++++|++++..|..+..+++|++|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 555444444555555555555555555444555555555555555555443
No 128
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.61 E-value=1.1e-13 Score=136.34 Aligned_cols=254 Identities=13% Similarity=0.160 Sum_probs=135.5
Q ss_pred ccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCcccccc
Q 040451 241 SLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVL 320 (566)
Q Consensus 241 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 320 (566)
....+|.++ +|+.+.+..+ +......+|.+ .+|+.+.+.. .+..... ..+..|++|+.+++..+.++...
T Consensus 127 I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~------~aF~~c~~L~~l~l~~n~l~~I~ 196 (401)
T 4fdw_A 127 IPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKE------DIFYYCYNLKKADLSKTKITKLP 196 (401)
T ss_dssp ECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECS------STTTTCTTCCEEECTTSCCSEEC
T ss_pred ehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehH------HHhhCcccCCeeecCCCcceEec
Confidence 334444443 4555555443 33334444444 2455555554 3333332 34555666666666555444221
Q ss_pred chhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCC
Q 040451 321 PFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNL 400 (566)
Q Consensus 321 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 400 (566)
. ..|. +.+|+.+.+..+ ++.....+|.++++|+.+++.++ ++......|..
T Consensus 197 ~-------------------------~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~- 247 (401)
T 4fdw_A 197 A-------------------------STFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE- 247 (401)
T ss_dssp T-------------------------TTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-
T ss_pred h-------------------------hhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-
Confidence 1 1222 345555555432 44444455666666666666553 33234444444
Q ss_pred CCCCeEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEE
Q 040451 401 TLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLD 480 (566)
Q Consensus 401 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 480 (566)
.+|+.+.+. +.++.....+|..|++|+.+.+.++... .+........+|.+|++|+.++
T Consensus 248 ~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~--------------------~~~~~~I~~~aF~~c~~L~~l~ 306 (401)
T 4fdw_A 248 SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFN--------------------DDPEAMIHPYCLEGCPKLARFE 306 (401)
T ss_dssp CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCC--------------------CCTTCEECTTTTTTCTTCCEEC
T ss_pred CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCcccc--------------------CCcccEECHHHhhCCccCCeEE
Confidence 566666663 3344345566666777776666655432 0111123344566777777777
Q ss_pred ccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCC-CCCeeeCCCCc
Q 040451 481 ISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLS-FLSFLNLSYNH 557 (566)
Q Consensus 481 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~-~L~~L~l~~~~ 557 (566)
+.+ .+......+|.+|++|+.++|..+ ++......|..+ +|+.+++++|.........|..++ .++.|++..+.
T Consensus 307 l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 307 IPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred eCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 774 355455566777777777777443 554555667777 777777777766655555566553 56666666554
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=2e-15 Score=127.68 Aligned_cols=128 Identities=19% Similarity=0.209 Sum_probs=113.3
Q ss_pred CcEEEEEcCCCCCc-ccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEE
Q 040451 34 QRVTGLDLRQQSVG-GVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFE 112 (566)
Q Consensus 34 ~~v~~l~l~~~~~~-~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 112 (566)
.++++|+++++.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 67999999999998 78888899999999999999999854 6789999999999999999976788788899999999
Q ss_pred ccCCccccc-CCccccCCCCCCEEecccCcCCCCCc---hhhcCCCCCCEEEeeC
Q 040451 113 ASNNKLEAE-IPVEIGNLLMLQILNIAENHLKGQLP---ASIGNLSALQEIDVRG 163 (566)
Q Consensus 113 L~~~~~~~~-~~~~~~~l~~L~~L~l~~~~i~~~~~---~~l~~l~~L~~L~l~~ 163 (566)
+++|.+++. .+..++.+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999852 34789999999999999999995444 4789999999999863
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=1.3e-14 Score=126.62 Aligned_cols=131 Identities=20% Similarity=0.239 Sum_probs=85.5
Q ss_pred cEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCC
Q 040451 428 ILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQD 507 (566)
Q Consensus 428 ~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 507 (566)
+.++++++.++ .+|..+. +.++.|++++|.+.+..+..+..+++|++|++++|.++...+..+..+++|++|++++
T Consensus 10 ~~l~~~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCS-SCCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCc-cCCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 34445555444 3332221 2335666666666555455567777777777777777755555567777777777777
Q ss_pred CcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCcccC
Q 040451 508 NSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKV 562 (566)
Q Consensus 508 ~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~ 562 (566)
|.+++..+..+..+++|+.|++++|.++...+..+..+++|+.|++++|++.+..
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 7777655556677777777777777777555555667777777777777776543
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=1.7e-14 Score=127.32 Aligned_cols=106 Identities=29% Similarity=0.302 Sum_probs=57.6
Q ss_pred cEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCC
Q 040451 453 VLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRN 532 (566)
Q Consensus 453 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 532 (566)
+.|++++|.+. .++..|..+++|+.|++++|.++...+..|.++++|++|++++|.++...+..|..+++|+.|++++|
T Consensus 34 ~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 34 TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN 112 (193)
T ss_dssp CEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCC
Confidence 44444444444 33344555555555555555555444455555555566666555555544455555555666666665
Q ss_pred cccccCCccCcCCCCCCeeeCCCCcCc
Q 040451 533 NLSGHIPQYLENLSFLSFLNLSYNHFE 559 (566)
Q Consensus 533 ~~~~~~~~~l~~~~~L~~L~l~~~~l~ 559 (566)
.++...+..+..+++|+.|++++|++.
T Consensus 113 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 113 DISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCeeChhhhhcCccccEEEeCCCCee
Confidence 555444444555555566666555543
No 132
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.58 E-value=2.5e-13 Score=134.70 Aligned_cols=331 Identities=14% Similarity=0.097 Sum_probs=162.0
Q ss_pred cCcccccccCccceeeccccccccch-hhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccc
Q 040451 169 RIPSTISHVRNLISFNVARNQFSGMI-PLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLS 247 (566)
Q Consensus 169 ~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 247 (566)
+...+|.++.+|+.+.+..+ +..+. ..+.+|++|+.+++..+ +. .+....+..+..|+.+.+..+ +......+|.
T Consensus 62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~ 137 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFK 137 (394)
T ss_dssp ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeee
Confidence 44455666667777666532 33333 44555666666665433 22 344444445555555444332 2223333444
Q ss_pred cCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhc
Q 040451 248 NATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANL 327 (566)
Q Consensus 248 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 327 (566)
++..++....... ......+|.++++|+.+.+.++. ..... ..+..+.+|+.+.+..+
T Consensus 138 ~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~------~~F~~c~~L~~i~l~~~------------- 195 (394)
T 4fs7_A 138 GCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHN------GLFSGCGKLKSIKLPRN------------- 195 (394)
T ss_dssp TCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECT------TTTTTCTTCCBCCCCTT-------------
T ss_pred cccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceecc------ccccCCCCceEEEcCCC-------------
Confidence 4432222221111 11223344555555555554322 11111 23444445554444322
Q ss_pred cccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEe
Q 040451 328 SITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLI 407 (566)
Q Consensus 328 ~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 407 (566)
+.......|.++..|+.+.+..+... . ........+|+.+.+.... +......+..+..++.+.
T Consensus 196 -------------~~~I~~~~F~~~~~L~~i~~~~~~~~-i-~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~ 259 (394)
T 4fs7_A 196 -------------LKIIRDYCFAECILLENMEFPNSLYY-L-GDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESIS 259 (394)
T ss_dssp -------------CCEECTTTTTTCTTCCBCCCCTTCCE-E-CTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEE
T ss_pred -------------ceEeCchhhccccccceeecCCCceE-e-ehhhcccCCCceEEECCCc-eecccccccccccceeEE
Confidence 11112234566666766666554322 1 1223345677777775442 224445666677777777
Q ss_pred cccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCccc
Q 040451 408 LEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFS 487 (566)
Q Consensus 408 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 487 (566)
+..+... .....|..+..++.+......+ +...+.....++.+.+..+ +......+|.+|++|+.+++.++ ++
T Consensus 260 ~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i----~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~ 332 (394)
T 4fs7_A 260 IQNNKLR-IGGSLFYNCSGLKKVIYGSVIV----PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE 332 (394)
T ss_dssp ECCTTCE-ECSCTTTTCTTCCEEEECSSEE----CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC
T ss_pred cCCCcce-eeccccccccccceeccCceee----ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc
Confidence 7665443 4555667777777766654432 2223333333355555433 33344455666666666666543 44
Q ss_pred ccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCee
Q 040451 488 GEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFL 551 (566)
Q Consensus 488 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L 551 (566)
.+...+|.+|.+|+.+++..+ ++......|..|++|+.+++..+ +. .+..+|.++++|+.+
T Consensus 333 ~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 333 EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 344556666666666666544 44444555666666666666543 22 223445555555543
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=3.4e-14 Score=125.37 Aligned_cols=125 Identities=22% Similarity=0.284 Sum_probs=63.9
Q ss_pred EEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCc
Q 040451 38 GLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNK 117 (566)
Q Consensus 38 ~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 117 (566)
.++++++.+. .+|..+. ++|++|+|++|.++ .+|..+..+++|++|++++|.++...+..|..+++|++|++++|.
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 3555555554 2333222 35566666666555 555555555555555555555554444445555555555555555
Q ss_pred ccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcc
Q 040451 118 LEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRL 166 (566)
Q Consensus 118 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~ 166 (566)
++...+..|.++++|++|++++|.++...+..+..+++|++|++++|.+
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 5544444455555555555555555532233344455555555555444
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.55 E-value=7.2e-16 Score=164.24 Aligned_cols=192 Identities=20% Similarity=0.171 Sum_probs=112.3
Q ss_pred CCCcEEEcCCCCCccccCccccCCCCCCEEeC-----CCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCC
Q 040451 58 SFPRSINLPNKSFRGEIPHEVSNLFRLQNLTL-----TNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLML 132 (566)
Q Consensus 58 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l-----~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L 132 (566)
++++.|+|.++.+.. .+..+.....|+.+.+ +.+.+. ..+..+..+++|++|+|++|.+. .+|..+.++++|
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 568888998888773 4443333333333333 233333 44667888999999999999988 778788899999
Q ss_pred CEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCc
Q 040451 133 QILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNR 212 (566)
Q Consensus 133 ~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~ 212 (566)
++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+.++++|+.|++++|.+..++..+..+++|++|++++|.
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCc
Confidence 99999999999 78888999999999999999998 77888999999999999999988777678888899999999988
Q ss_pred CcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccc
Q 040451 213 FHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGN 260 (566)
Q Consensus 213 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 260 (566)
+.+.+|..+......+..+++++|.++...|. .|+.|+++.+
T Consensus 328 l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 328 LEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred cCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 88666654431111222356777777655443 4455555554
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=1.9e-14 Score=125.27 Aligned_cols=132 Identities=14% Similarity=0.116 Sum_probs=80.8
Q ss_pred CcCCCCCcEEEcCCCCCccccCccccCC-CCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCC
Q 040451 54 VGNLSFPRSINLPNKSFRGEIPHEVSNL-FRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLML 132 (566)
Q Consensus 54 l~~l~~L~~L~L~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L 132 (566)
+.++++|++|++++|.++ .++. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 455666777777777666 4443 3333 3677777777766642 456666677777777776663322334666677
Q ss_pred CEEecccCcCCCCCch--hhcCCCCCCEEEeeCCcccccCccc----ccccCccceeeccccccc
Q 040451 133 QILNIAENHLKGQLPA--SIGNLSALQEIDVRGNRLGGRIPST----ISHVRNLISFNVARNQFS 191 (566)
Q Consensus 133 ~~L~l~~~~i~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~~ 191 (566)
++|++++|.++ .+|. .+..+++|++|++++|.+. ..|.. +..+++|+.|++++|...
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 77777777665 4444 5666667777777776665 33442 556666666666666544
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.54 E-value=7e-13 Score=130.72 Aligned_cols=241 Identities=12% Similarity=0.075 Sum_probs=135.3
Q ss_pred CCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEe
Q 040451 57 LSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILN 136 (566)
Q Consensus 57 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 136 (566)
+..++.+.+.+. ++..-..+|.++ +|+.+++..+ ++.....+|..+ +|+.+.+.. .+......+|.+|++|+.++
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 355666665532 332223445554 5777777665 443445556664 577777765 44434445677777777777
Q ss_pred cccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccch-hhhhCCCCCcEEEcccCcCcc
Q 040451 137 IAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMI-PLIYNISSLQYIFIHTNRFHG 215 (566)
Q Consensus 137 l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~ 215 (566)
+++++++.....+|. +.+|+.+.+..+ +..+...+|.++++|+.+++..+ +..+. ..+.+ .+|+.+.+. +.+.
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~- 260 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT- 260 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC-
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc-
Confidence 777776633333333 567777777644 44455566677777777777653 33333 33333 566666663 2233
Q ss_pred cCCccccCCCCCccEEEccCCccc-----cccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCC
Q 040451 216 SLPLDNGVNLPNLRYFSISGNNLT-----GSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGT 290 (566)
Q Consensus 216 ~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 290 (566)
.++...+..+++|+.+.+.++.+. .....+|.+|++|+.+.+.+ .+......+|.++.+|+.+.+..+ +....
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~ 338 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQIN 338 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence 444455556666666666665443 34445566666666666663 344455555666666666666443 33333
Q ss_pred CCChhhhhhhcCCCCCCEEEcccCccc
Q 040451 291 ANDLDFITLLTNCTKLEVLDLHSNRFG 317 (566)
Q Consensus 291 ~~~~~~~~~l~~~~~L~~L~l~~~~~~ 317 (566)
. .+|.++ +|+.+.+.++...
T Consensus 339 ~------~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 339 F------SAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp T------TSSSSS-CCCEEEECCSSCC
T ss_pred H------HhCCCC-CCCEEEEcCCCCc
Confidence 3 345555 6666666665443
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=1.3e-13 Score=120.08 Aligned_cols=110 Identities=19% Similarity=0.173 Sum_probs=71.5
Q ss_pred CCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEec
Q 040451 58 SFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNI 137 (566)
Q Consensus 58 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l 137 (566)
++|++|++++|.+.+..+..+..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+.++++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 57777777777777444445667777777777777776544455667777777777777766544445666667777777
Q ss_pred ccCcCCCCCchhhcCCCCCCEEEeeCCccc
Q 040451 138 AENHLKGQLPASIGNLSALQEIDVRGNRLG 167 (566)
Q Consensus 138 ~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~ 167 (566)
++|.+++..+..+..+++|++|++++|.+.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 777666433334456666666766666655
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=1.1e-13 Score=120.40 Aligned_cols=133 Identities=17% Similarity=0.198 Sum_probs=99.3
Q ss_pred cccCCCCCCEEeCCCccCCCCCCcccccC-CCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCC
Q 040451 77 EVSNLFRLQNLTLTNNYFSGKILTDLSHC-SNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSA 155 (566)
Q Consensus 77 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~ 155 (566)
.+.++.+|++|++++|.++. ++. +..+ ++|++|++++|.+++. ..++++++|++|++++|.+++..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 35677889999999998873 443 4444 4899999999988753 57888888999999988888433344588888
Q ss_pred CCEEEeeCCcccccCcc--cccccCccceeeccccccccchh----hhhCCCCCcEEEcccCcCc
Q 040451 156 LQEIDVRGNRLGGRIPS--TISHVRNLISFNVARNQFSGMIP----LIYNISSLQYIFIHTNRFH 214 (566)
Q Consensus 156 L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~ 214 (566)
|++|++++|.+. .+|. .+..+++|+.|++++|.+...+. .+..+++|+.|+++.|...
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 888888888886 4454 67788888888888888876654 3667777777777766543
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=1.2e-15 Score=135.68 Aligned_cols=109 Identities=21% Similarity=0.219 Sum_probs=47.7
Q ss_pred cccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCC
Q 040451 77 EVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSAL 156 (566)
Q Consensus 77 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L 156 (566)
.+..+++|++|++++|.++. ++ .+..+++|++|++++|.+. .+|..+..+++|++|++++|++++ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 44444455555555554442 23 4444444444444444444 334334444444444444444442 22 34444444
Q ss_pred CEEEeeCCcccccCc-ccccccCccceeecccccc
Q 040451 157 QEIDVRGNRLGGRIP-STISHVRNLISFNVARNQF 190 (566)
Q Consensus 157 ~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~ 190 (566)
++|++++|.+....+ ..+..+++|+.|++++|.+
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 444444444432111 2334444444444444444
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.42 E-value=1.1e-12 Score=113.10 Aligned_cols=105 Identities=24% Similarity=0.269 Sum_probs=58.6
Q ss_pred CcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCC
Q 040451 427 LILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQ 506 (566)
Q Consensus 427 L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 506 (566)
.+.+++++|.++ .+|..+. ..++.|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|+|+
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 355666666665 4444332 333556666666655555555556666666666666654444445555666666666
Q ss_pred CCcccccCCcCCCCCCCCCEEeCCCCccc
Q 040451 507 DNSFTRSIPSTLSSLKSITELDLSRNNLS 535 (566)
Q Consensus 507 ~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 535 (566)
+|++++..+..|..+++|+.|++++|++.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 66665444444555566666666666554
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=4.4e-15 Score=132.11 Aligned_cols=134 Identities=16% Similarity=0.221 Sum_probs=97.0
Q ss_pred ccCCCCCCEEeCCCccCCCCCCc------ccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhc
Q 040451 78 VSNLFRLQNLTLTNNYFSGKILT------DLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIG 151 (566)
Q Consensus 78 ~~~l~~L~~L~l~~~~~~~~~~~------~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~ 151 (566)
+.....++.++++.+.+++..+. .+..+++|++|++++|.+.+ +| .+.++++|++|++++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 34445666666666666555444 77888888888888888874 66 7788888888888888888 6777777
Q ss_pred CCCCCCEEEeeCCcccccCcccccccCccceeeccccccccch--hhhhCCCCCcEEEcccCcCccc
Q 040451 152 NLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMI--PLIYNISSLQYIFIHTNRFHGS 216 (566)
Q Consensus 152 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~ 216 (566)
.+++|++|++++|.+++ +| .+..+++|+.|++++|.+.... ..+..+++|++|++++|.+.+.
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 77888888888888774 33 5777788888888888877654 3566667777777776666533
No 142
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.41 E-value=5e-11 Score=118.08 Aligned_cols=85 Identities=11% Similarity=0.111 Sum_probs=48.7
Q ss_pred CCccccCCC-CCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCc---ccccCcccccccCccceeeccccccccch-hh
Q 040451 122 IPVEIGNLL-MLQILNIAENHLKGQLPASIGNLSALQEIDVRGNR---LGGRIPSTISHVRNLISFNVARNQFSGMI-PL 196 (566)
Q Consensus 122 ~~~~~~~l~-~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~ 196 (566)
...+|.+++ .|+.+.+..+ ++.....+|.++.+|+.+.+..+. ++.+...+|.++.+|+.+.+..+ +.... ..
T Consensus 55 g~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a 132 (394)
T 4gt6_A 55 GDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEA 132 (394)
T ss_dssp CTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTT
T ss_pred CHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhh
Confidence 345677764 4888887764 554566777788888888876543 33344455666666666655433 22222 33
Q ss_pred hhCCCCCcEEEc
Q 040451 197 IYNISSLQYIFI 208 (566)
Q Consensus 197 l~~~~~L~~L~l 208 (566)
+..+.+|+.+.+
T Consensus 133 F~~c~~L~~i~l 144 (394)
T 4gt6_A 133 FHHCEELDTVTI 144 (394)
T ss_dssp TTTCTTCCEEEC
T ss_pred hhhhcccccccc
Confidence 444444554444
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=1.8e-12 Score=112.16 Aligned_cols=104 Identities=25% Similarity=0.277 Sum_probs=61.4
Q ss_pred cEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCC
Q 040451 428 ILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQD 507 (566)
Q Consensus 428 ~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 507 (566)
+.++++++.+. .+|..+. ..++.|++++|.+.+..+..|..+++|+.|++++|.+++..+..|..+++|++|+|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 56666666665 5554332 3346666666666655555566666666666666666644344455666666666666
Q ss_pred CcccccCCcCCCCCCCCCEEeCCCCccc
Q 040451 508 NSFTRSIPSTLSSLKSITELDLSRNNLS 535 (566)
Q Consensus 508 ~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 535 (566)
|+++...+..|..+++|+.|++++|++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 6666444444666666666666666665
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.38 E-value=5.6e-11 Score=117.70 Aligned_cols=318 Identities=12% Similarity=0.125 Sum_probs=194.1
Q ss_pred hhhhCCC-CCcEEEcccCcCcccCCccccCCCCCccEEEccCCc---cccccccccccCCCCceEecccccccccccccc
Q 040451 195 PLIYNIS-SLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNN---LTGSLQDSLSNATNLQGLEINGNLFSGKVSINF 270 (566)
Q Consensus 195 ~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 270 (566)
..+.++. .|+.+.+... ++ .+....+..+.+|+.+.+..+. ++.....+|.++..|+.+.+..+ +.......|
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred hhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 3444553 4777777543 33 5555566677888888876552 55555667777777777776544 333455566
Q ss_pred cCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhh
Q 040451 271 SRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIA 350 (566)
Q Consensus 271 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~ 350 (566)
..+.+|+.+.+.... ..... ..+..+..|+.+.+..+- . . .-..+|.
T Consensus 134 ~~c~~L~~i~lp~~~-~~I~~------~~F~~c~~L~~i~~~~~~-~---------------~----------I~~~aF~ 180 (394)
T 4gt6_A 134 HHCEELDTVTIPEGV-TSVAD------GMFSYCYSLHTVTLPDSV-T---------------A----------IEERAFT 180 (394)
T ss_dssp TTCTTCCEEECCTTC-CEECT------TTTTTCTTCCEEECCTTC-C---------------E----------ECTTTTT
T ss_pred hhhccccccccccee-eeecc------cceeccccccccccccee-e---------------E----------ecccccc
Confidence 777777777775432 22222 345666777777665431 1 0 1112333
Q ss_pred ccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCcc-------------ccCCCCCCeEecccCcceecC
Q 040451 351 NLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSS-------------LGNLTLLTQLILEVNNLQGKI 417 (566)
Q Consensus 351 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------------~~~l~~L~~L~l~~~~l~~~~ 417 (566)
...|+.+.+.... ......++..+.+++................ +.....+..+.+.. .+....
T Consensus 181 -~~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~ 257 (394)
T 4gt6_A 181 -GTALTQIHIPAKV-TRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIE 257 (394)
T ss_dssp -TCCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEEC
T ss_pred -ccceeEEEECCcc-cccccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCC-cceEcc
Confidence 2468888876543 3355567888888888877655433111000 11223444454443 233355
Q ss_pred CccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCC
Q 040451 418 PPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGC 497 (566)
Q Consensus 418 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 497 (566)
..+|..|..|+.+.+..... .+....+.....++.+.+. +.+......+|.+|.+|++++|.++ ++.+...+|.+|
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C 333 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC 333 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred cceeeecccccEEecccccc--eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC
Confidence 67788999999999876543 3445555555555888885 4455566678999999999999865 554667889999
Q ss_pred CCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCc
Q 040451 498 TSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 559 (566)
Q Consensus 498 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~ 559 (566)
.+|+.+.|..+ ++......|.+|.+|+.+++.++... . ..+..+.+|+.+.+..+.+.
T Consensus 334 ~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-~--~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 334 EQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ-W--NAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp TTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH-H--HTCBCCCCC-----------
T ss_pred CCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee-h--hhhhccCCCCEEEeCCCCEE
Confidence 99999999654 66556678999999999999988654 2 45667788999988877553
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.35 E-value=6.5e-12 Score=108.23 Aligned_cols=104 Identities=20% Similarity=0.239 Sum_probs=54.2
Q ss_pred cEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccC
Q 040451 61 RSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAEN 140 (566)
Q Consensus 61 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~ 140 (566)
++++++++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|++++..+..|.++++|++|++++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 34445544444 344333 245555555555555444445555555555555555555333334455556666666666
Q ss_pred cCCCCCchhhcCCCCCCEEEeeCCccc
Q 040451 141 HLKGQLPASIGNLSALQEIDVRGNRLG 167 (566)
Q Consensus 141 ~i~~~~~~~l~~l~~L~~L~l~~~~~~ 167 (566)
++++..+..+..+++|++|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 555333334555566666666665554
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.33 E-value=9.2e-12 Score=107.64 Aligned_cols=104 Identities=25% Similarity=0.263 Sum_probs=52.3
Q ss_pred cEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccC
Q 040451 61 RSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAEN 140 (566)
Q Consensus 61 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~ 140 (566)
+.++++++.+. .+|..+. ++|++|++++|.+++..+..|..+++|++|+|++|++++..+..|.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34444444443 4443332 45555555555555444444555555555555555555332333455555555555555
Q ss_pred cCCCCCchhhcCCCCCCEEEeeCCccc
Q 040451 141 HLKGQLPASIGNLSALQEIDVRGNRLG 167 (566)
Q Consensus 141 ~i~~~~~~~l~~l~~L~~L~l~~~~~~ 167 (566)
+++...+..+..+++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 555333333555556666666655554
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=6.2e-14 Score=136.90 Aligned_cols=185 Identities=18% Similarity=0.096 Sum_probs=125.3
Q ss_pred CCCCCEEEccCCcccccCCccc----c-CCCCCCeEecccCcceecCCccc-cCCCCCcEEEccCCcccccCchhhhc--
Q 040451 376 LKSLQMLFLNENFLRGTIPSSL----G-NLTLLTQLILEVNNLQGKIPPSI-GNCQNLILLTTRKNKLSGTVPRQLLH-- 447 (566)
Q Consensus 376 ~~~L~~L~l~~~~~~~~~~~~~----~-~l~~L~~L~l~~~~l~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~-- 447 (566)
.+.|++|++++|.++......+ . ..++|++|++++|.++......+ ..+++|+.|++++|.+++.....+..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4689999999999875433333 2 23799999999999874433333 34568999999999987654444432
Q ss_pred --cCCcCcEEEccCCcceec----CCccccCCCCCCEEEccCCccccc----CCcCCcCCCCCcEEeCCCCcccccC---
Q 040451 448 --IITLPVLLDLSDNLLNGH----FPAEVGNLKNLVSLDISSNMFSGE----IPTTLGGCTSLEYLGMQDNSFTRSI--- 514 (566)
Q Consensus 448 --~~~~l~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~--- 514 (566)
....++.|++++|.+++. ++..+..+++|++|++++|.+.+. +...+..+++|++|+|++|.+++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 234458899999988653 233456788899999999988743 2455677788999999999888532
Q ss_pred -CcCCCCCCCCCEEeCCCCcccccCCccCcCC---C--CCCeee--CCCCcCcc
Q 040451 515 -PSTLSSLKSITELDLSRNNLSGHIPQYLENL---S--FLSFLN--LSYNHFEG 560 (566)
Q Consensus 515 -~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~---~--~L~~L~--l~~~~l~~ 560 (566)
+..+...++|+.|++++|+++......+..+ . .|+.+. +.++.+++
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~ 284 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE 284 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence 3344556889999999999875444444322 1 166666 66666653
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.26 E-value=5.7e-14 Score=137.15 Aligned_cols=184 Identities=16% Similarity=0.105 Sum_probs=128.6
Q ss_pred cCCCCEEecCCccccccchhhcc-----CCCCCCEEEccCCcccccCCccc-cCCCCCCeEecccCcceecCCccc----
Q 040451 352 LVNLNALGVESNQLAGTIPLAIG-----ELKSLQMLFLNENFLRGTIPSSL-GNLTLLTQLILEVNNLQGKIPPSI---- 421 (566)
Q Consensus 352 l~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~~~~~~~---- 421 (566)
+++|+.|++++|.++......+. ..++|++|++++|.+++.....+ ..+++|++|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 56899999999998765443332 23799999999999875433333 345789999999999875443333
Q ss_pred -cCCCCCcEEEccCCcccccCch----hhhccCCcCcEEEccCCcceecC----CccccCCCCCCEEEccCCccccc---
Q 040451 422 -GNCQNLILLTTRKNKLSGTVPR----QLLHIITLPVLLDLSDNLLNGHF----PAEVGNLKNLVSLDISSNMFSGE--- 489 (566)
Q Consensus 422 -~~~~~L~~L~l~~~~l~~~~~~----~~~~~~~~l~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~--- 489 (566)
...++|+.|++++|.+++.... .+...+. ++.|++++|.+.+.. +..+...++|++|++++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~-L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS-VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSS-CCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCC-cCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 3568999999999998753322 3344444 599999999987543 44567788999999999999853
Q ss_pred -CCcCCcCCCCCcEEeCCCCcccccCCcCCCCC---CC--CCEEe--CCCCcccc
Q 040451 490 -IPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSL---KS--ITELD--LSRNNLSG 536 (566)
Q Consensus 490 -~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l---~~--L~~L~--l~~n~~~~ 536 (566)
+...+..+++|++|+|++|.+++.....+..+ .. |+.+. +..+.+..
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~ 284 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE 284 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence 33445667999999999999986544333222 22 77777 77777653
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.16 E-value=1.6e-08 Score=99.43 Aligned_cols=164 Identities=11% Similarity=0.104 Sum_probs=87.8
Q ss_pred cCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEE
Q 040451 352 LVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLT 431 (566)
Q Consensus 352 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ 431 (566)
...+..+.+.... .......+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++.....+|..+.+|+.+.
T Consensus 193 ~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~ 269 (379)
T 4h09_A 193 AKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLN 269 (379)
T ss_dssp TCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred cccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccc
Confidence 3444444443322 1133344555666666666544 22244455566666776666554 3334455666666666665
Q ss_pred ccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCccc
Q 040451 432 TRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT 511 (566)
Q Consensus 432 l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 511 (566)
+..+ +. . .....|.+|++|+.+.+.++.++.....+|.+|.+|+.++|..+ ++
T Consensus 270 l~~~-i~-~------------------------i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~ 322 (379)
T 4h09_A 270 FYAK-VK-T------------------------VPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK 322 (379)
T ss_dssp ECCC-CS-E------------------------ECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC
T ss_pred cccc-ce-e------------------------ccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc
Confidence 5432 11 1 22334566666666666666665445556666666666666433 44
Q ss_pred ccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCC
Q 040451 512 RSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLS 546 (566)
Q Consensus 512 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~ 546 (566)
......|.+|.+|+++.+..+ ++.....+|.+++
T Consensus 323 ~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 323 TIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred EEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 444456666666666666544 4434445555543
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.10 E-value=2.1e-10 Score=111.53 Aligned_cols=102 Identities=22% Similarity=0.187 Sum_probs=46.9
Q ss_pred EEccCC-cccccCchhhhccCCcCcEEEccC-CcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCC
Q 040451 430 LTTRKN-KLSGTVPRQLLHIITLPVLLDLSD-NLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQD 507 (566)
Q Consensus 430 L~l~~~-~l~~~~~~~~~~~~~~l~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 507 (566)
++++++ .++ .+|. +..+..+ +.|++++ |.+.+..+..|..+++|+.|+|++|.+++..+..|.++++|++|+|++
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L-~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENL-TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCC-SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCe-eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 344444 444 3444 3332222 4555553 455444444455555555555555555544444445555555555555
Q ss_pred CcccccCCcCCCCCCCCCEEeCCCCccc
Q 040451 508 NSFTRSIPSTLSSLKSITELDLSRNNLS 535 (566)
Q Consensus 508 ~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 535 (566)
|+++...+..+..++ |+.|++++|++.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 555533333333333 555555555544
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.09 E-value=2e-08 Score=98.82 Aligned_cols=61 Identities=13% Similarity=0.144 Sum_probs=30.4
Q ss_pred hhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 040451 348 VIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILE 409 (566)
Q Consensus 348 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 409 (566)
.|.++.+|+.+.+.++.++.....+|.+|.+|+.+.+..+ ++.....+|.++.+|+.+.+.
T Consensus 281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 3445555555555554444444445555555555555432 332334445555555555554
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.03 E-value=7.6e-10 Score=107.63 Aligned_cols=101 Identities=17% Similarity=0.145 Sum_probs=60.5
Q ss_pred EcCCC-CCcccCcccCcCCCCCcEEEcCC-CCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCc
Q 040451 40 DLRQQ-SVGGVLSPFVGNLSFPRSINLPN-KSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNK 117 (566)
Q Consensus 40 ~l~~~-~~~~~~~~~l~~l~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 117 (566)
+.+++ .+.. +|. +..+++|++|+|++ |.+.+..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|+
T Consensus 14 ~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 33444 4543 555 77777777777775 77764444566777777777777777765555566666666666666666
Q ss_pred ccccCCccccCCCCCCEEecccCcCC
Q 040451 118 LEAEIPVEIGNLLMLQILNIAENHLK 143 (566)
Q Consensus 118 ~~~~~~~~~~~l~~L~~L~l~~~~i~ 143 (566)
+.+..+..+..++ |++|++++|.+.
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 6533333333333 666666655554
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.97 E-value=3.1e-10 Score=109.67 Aligned_cols=187 Identities=13% Similarity=0.078 Sum_probs=107.5
Q ss_pred hhhccCCCCEEecCCcccc---------ccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCC
Q 040451 348 VIANLVNLNALGVESNQLA---------GTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIP 418 (566)
Q Consensus 348 ~l~~l~~L~~L~l~~~~~~---------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 418 (566)
....+++|+.|.+.+.... +.+...+..+|+|++|.+++|.-. .++. + .+++|++|++..|.+.....
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHH
Confidence 3456677777777554221 112334456778888888776311 2222 2 26777777777776654333
Q ss_pred cccc--CCCCCcEEEccCC--cccccC-chhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcC
Q 040451 419 PSIG--NCQNLILLTTRKN--KLSGTV-PRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTT 493 (566)
Q Consensus 419 ~~~~--~~~~L~~L~l~~~--~l~~~~-~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 493 (566)
..+. .+|+|+.|+++.+ ...+.. ...+.. .. ....+++|+.|++.+|.+.+..+..
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-----------------~l--~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-----------------LF--SKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-----------------GS--CTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred HHHHHccCCCCcEEEEeccccccccchhHHHHHH-----------------HH--hcCCCCCcCEEeCCCCCCchHHHHH
Confidence 3332 5677777776432 111000 000000 00 0135788999999888876432222
Q ss_pred C---cCCCCCcEEeCCCCccccc----CCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCc
Q 040451 494 L---GGCTSLEYLGMQDNSFTRS----IPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNH 557 (566)
Q Consensus 494 ~---~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~ 557 (566)
+ ..+++|++|+|+.|.+.+. ++..+..+++|++|++++|.++......+...- ..+++++++.
T Consensus 272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence 2 3578899999998888764 234445678899999999988755444444311 3567787775
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.86 E-value=1.6e-09 Score=104.74 Aligned_cols=83 Identities=10% Similarity=0.153 Sum_probs=42.7
Q ss_pred cCccceeeccccccccch-hhhh---CCCCCcEEEcccCcCcccCCcccc---CCCCCccEEEccCCcccccccccccc-
Q 040451 177 VRNLISFNVARNQFSGMI-PLIY---NISSLQYIFIHTNRFHGSLPLDNG---VNLPNLRYFSISGNNLTGSLQDSLSN- 248 (566)
Q Consensus 177 l~~L~~L~l~~~~~~~~~-~~l~---~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~l~~- 248 (566)
+++|+.|++.+|.+.+.. ..+. .+++|++|+++.|.+.+.-...+. ..+++|+.|+++.|.+++.....+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 456666666655554322 1121 355666666666665532111111 14567777777777776554444433
Q ss_pred CCCCceEeccccc
Q 040451 249 ATNLQGLEINGNL 261 (566)
Q Consensus 249 l~~L~~L~l~~~~ 261 (566)
+ ...++++.++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 2 2345555544
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.62 E-value=5.6e-09 Score=90.99 Aligned_cols=117 Identities=10% Similarity=0.080 Sum_probs=66.7
Q ss_pred CcccCcCCCCCcEEEcCCC-CCccc----cCccccCCCCCCEEeCCCccCCCC----CCcccccCCCCCEEEccCCcccc
Q 040451 50 LSPFVGNLSFPRSINLPNK-SFRGE----IPHEVSNLFRLQNLTLTNNYFSGK----ILTDLSHCSNVMKFEASNNKLEA 120 (566)
Q Consensus 50 ~~~~l~~l~~L~~L~L~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~~~~~~ 120 (566)
+...+...++|++|+|++| .+.+. +...+...++|++|+|++|.+... +...+...+.|++|+|++|.+.+
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 4445566777777777777 66532 344455667777777777776532 22334455666666666666653
Q ss_pred c----CCccccCCCCCCEEec--ccCcCCCC----CchhhcCCCCCCEEEeeCCcc
Q 040451 121 E----IPVEIGNLLMLQILNI--AENHLKGQ----LPASIGNLSALQEIDVRGNRL 166 (566)
Q Consensus 121 ~----~~~~~~~l~~L~~L~l--~~~~i~~~----~~~~l~~l~~L~~L~l~~~~~ 166 (566)
. +...+...+.|++|++ ++|.+... +...+...++|++|++++|.+
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2 2334455556666666 55555532 223333445566666665554
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.49 E-value=9.3e-09 Score=86.89 Aligned_cols=81 Identities=12% Similarity=0.051 Sum_probs=37.5
Q ss_pred cEEEccCCcceecCCccccCCCCCCEEEccCCc-ccccCCcCCcCC----CCCcEEeCCCCc-ccccCCcCCCCCCCCCE
Q 040451 453 VLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNM-FSGEIPTTLGGC----TSLEYLGMQDNS-FTRSIPSTLSSLKSITE 526 (566)
Q Consensus 453 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~----~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~ 526 (566)
+.||+++|.+++.....+..+++|++|++++|. +++.....+..+ ++|++|+|++|. +++.....+..+++|+.
T Consensus 64 ~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~ 143 (176)
T 3e4g_A 64 QAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKY 143 (176)
T ss_dssp EEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCE
T ss_pred eEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCE
Confidence 455555555544444444455555555555553 333222223322 245555555552 44433333444555555
Q ss_pred EeCCCCc
Q 040451 527 LDLSRNN 533 (566)
Q Consensus 527 L~l~~n~ 533 (566)
|++++|+
T Consensus 144 L~L~~c~ 150 (176)
T 3e4g_A 144 LFLSDLP 150 (176)
T ss_dssp EEEESCT
T ss_pred EECCCCC
Confidence 5555554
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.44 E-value=1.3e-08 Score=92.95 Aligned_cols=81 Identities=21% Similarity=0.359 Sum_probs=51.8
Q ss_pred ccCCCCCEEEccCCcccc--cCCccccCCCCCCEEecccCcCCCCCchhhcCCC--CCCEEEeeCCcccccCc-------
Q 040451 103 SHCSNVMKFEASNNKLEA--EIPVEIGNLLMLQILNIAENHLKGQLPASIGNLS--ALQEIDVRGNRLGGRIP------- 171 (566)
Q Consensus 103 ~~l~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~------- 171 (566)
.++++|++|+|++|.+.+ .++..+..+++|++|+|++|.+++. ..+..+. +|++|++++|.+.+..|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 456777777777777764 3344556777777777777777732 3344444 77777777777765443
Q ss_pred ccccccCccceeec
Q 040451 172 STISHVRNLISFNV 185 (566)
Q Consensus 172 ~~l~~l~~L~~L~l 185 (566)
..+..+++|+.||-
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 23566777777753
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.38 E-value=1.1e-07 Score=80.26 Aligned_cols=82 Identities=10% Similarity=0.090 Sum_probs=37.4
Q ss_pred CCCEEeCCCccCCCCCCcccccCCCCCEEEccCCc-ccccCCccccCC----CCCCEEecccCc-CCCCCchhhcCCCCC
Q 040451 83 RLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNK-LEAEIPVEIGNL----LMLQILNIAENH-LKGQLPASIGNLSAL 156 (566)
Q Consensus 83 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~~~~l----~~L~~L~l~~~~-i~~~~~~~l~~l~~L 156 (566)
.|++||+++|.++......+..|++|++|+|++|. +++..-..++.+ ++|++|++++|. ++......+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 44555555555444334444455555555555543 333222223332 245555555542 443333344445555
Q ss_pred CEEEeeCC
Q 040451 157 QEIDVRGN 164 (566)
Q Consensus 157 ~~L~l~~~ 164 (566)
++|++++|
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55555554
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.37 E-value=1.9e-07 Score=81.14 Aligned_cols=14 Identities=7% Similarity=0.005 Sum_probs=6.3
Q ss_pred CCCCcEEEccCCcc
Q 040451 424 CQNLILLTTRKNKL 437 (566)
Q Consensus 424 ~~~L~~L~l~~~~l 437 (566)
.++|++|++++|.+
T Consensus 150 n~~L~~L~L~~n~i 163 (185)
T 1io0_A 150 NTTLLKFGYHFTQQ 163 (185)
T ss_dssp CSSCCEEECCCSSH
T ss_pred CCCcCEEeccCCCC
Confidence 34444444444443
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.15 E-value=1.1e-06 Score=80.25 Aligned_cols=81 Identities=22% Similarity=0.324 Sum_probs=59.9
Q ss_pred cCCCCCCEEEccCCcccc--cCCcCCcCCCCCcEEeCCCCccccc-CCcCCCCCCCCCEEeCCCCcccccCC-------c
Q 040451 471 GNLKNLVSLDISSNMFSG--EIPTTLGGCTSLEYLGMQDNSFTRS-IPSTLSSLKSITELDLSRNNLSGHIP-------Q 540 (566)
Q Consensus 471 ~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~-------~ 540 (566)
..++.|++|+|++|.+++ .++..+..+++|+.|+|++|.+++. ....+..+ +|+.|++++|++.+..| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 467889999999999885 3345566789999999999988854 11223333 89999999999886554 2
Q ss_pred cCcCCCCCCeee
Q 040451 541 YLENLSFLSFLN 552 (566)
Q Consensus 541 ~l~~~~~L~~L~ 552 (566)
.+..+|+|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 356788888876
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.31 E-value=0.00017 Score=61.98 Aligned_cols=38 Identities=24% Similarity=0.163 Sum_probs=17.1
Q ss_pred hhccCCCCEEecCCccccccc----hhhccCCCCCCEEEccC
Q 040451 349 IANLVNLNALGVESNQLAGTI----PLAIGELKSLQMLFLNE 386 (566)
Q Consensus 349 l~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~ 386 (566)
+.....|+.|+|+.|.|.... ..++.....|++|++++
T Consensus 94 L~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 94 IETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred HhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 334445555555555554331 12333344455555543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.27 E-value=0.00013 Score=62.80 Aligned_cols=115 Identities=11% Similarity=0.102 Sum_probs=65.5
Q ss_pred cccCcCCCCCcEEEcCCC-CCccc----cCccccCCCCCCEEeCCCccCCCCCC----cccccCCCCCEEEccCCccccc
Q 040451 51 SPFVGNLSFPRSINLPNK-SFRGE----IPHEVSNLFRLQNLTLTNNYFSGKIL----TDLSHCSNVMKFEASNNKLEAE 121 (566)
Q Consensus 51 ~~~l~~l~~L~~L~L~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~L~~~~~~~~ 121 (566)
...+.+-+.|++|+|+++ .+.+. +-.++..-+.|++|+|++|.+.+... ..+..-+.|++|+|++|.+.+.
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 334455667888888774 66532 44455666778888888887764322 3334556777777777776542
Q ss_pred ----CCccccCCCCCCEEecccCc---CCC----CCchhhcCCCCCCEEEeeCCc
Q 040451 122 ----IPVEIGNLLMLQILNIAENH---LKG----QLPASIGNLSALQEIDVRGNR 165 (566)
Q Consensus 122 ----~~~~~~~l~~L~~L~l~~~~---i~~----~~~~~l~~l~~L~~L~l~~~~ 165 (566)
+.+++..-+.|++|+|+++. +.. .+.+.+..-+.|+.|+++.+.
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 22334445557777776432 221 122334444566666665543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.19 E-value=0.00072 Score=54.27 Aligned_cols=57 Identities=19% Similarity=0.274 Sum_probs=44.6
Q ss_pred CEEEccCCccc-ccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCccc
Q 040451 477 VSLDISSNMFS-GEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLS 535 (566)
Q Consensus 477 ~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 535 (566)
..++.+++.++ ..+|..+. ++|++|+|++|.++...+..|..+++|+.|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888888886 35665544 67899999999998666667788889999999999885
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.80 E-value=0.0023 Score=51.33 Aligned_cols=57 Identities=18% Similarity=0.250 Sum_probs=44.9
Q ss_pred cEEEccCCcce-ecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCccc
Q 040451 453 VLLDLSDNLLN-GHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT 511 (566)
Q Consensus 453 ~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 511 (566)
..++.++..++ ..+|..+. ++|++|+|++|.++...+..|..+++|++|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46788888876 24454443 57999999999999666677899999999999999775
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=77.08 E-value=5.9 Score=29.42 Aligned_cols=46 Identities=17% Similarity=0.214 Sum_probs=33.4
Q ss_pred ceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCC
Q 040451 462 LNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDN 508 (566)
Q Consensus 462 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 508 (566)
++.+...+|.+|.+|+++.|..+ ++.+...+|.+|.+|+.+.+.+.
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 33345567888888888888875 33366677888888888888654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=62.06 E-value=9.5 Score=28.24 Aligned_cols=48 Identities=17% Similarity=0.170 Sum_probs=37.9
Q ss_pred CcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCC
Q 040451 484 NMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRN 532 (566)
Q Consensus 484 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 532 (566)
-.++.+...+|.+|.+|+.+.|-.+ ++......|..|.+|+.+.+.+.
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3455556678999999999999654 55466678999999999999875
Done!