BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040452
(316 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 113/242 (46%), Gaps = 33/242 (13%)
Query: 86 LLRNLAILIYCPADDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAK 145
LL+N A + DD+ T LH A G+ +VK+L + + P A G T L++AA+
Sbjct: 66 LLQNKAKVNAKAKDDQ--TPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAR 122
Query: 146 GRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLV------------CSSENW 193
+ E V+ LLE S + G T LH AA YGK V + +N
Sbjct: 123 EGHVETVLALLEKEASQACMTKKGFTPLHVAA---KYGKVRVAELLLERDAHPNAAGKNG 179
Query: 194 VI-IAASLLNNKVIILKPLF---------VVIGWTPIHYAAYYDQYQLIHMLLKRGSNCF 243
+ + ++ +N + I+K L G+TP+H AA +Q ++ LL+ G +
Sbjct: 180 LTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN 239
Query: 244 KYCCQRSKMTALRLAAGQRHARTVKTILSLNPE---FNGEGDTPLPVAAKFGHFNIANVL 300
Q +T L LAA + HA V +LS N G TPL + A+ GH +A+VL
Sbjct: 240 AESVQ--GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 297
Query: 301 IK 302
IK
Sbjct: 298 IK 299
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 89/202 (44%), Gaps = 20/202 (9%)
Query: 104 TALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVS 163
T LH AV H N+ +VK+L + P+S G T L++AAK E+ LL+ S +
Sbjct: 181 TPLHVAVHHNNLDIVKLLLPRG-GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN 239
Query: 164 YEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYA 223
E G T LH AA + + S+ A L NK G TP+H
Sbjct: 240 AESVQGVTPLHLAAQEGHAEMVALLLSKQ----ANGNLGNKS----------GLTPLHLV 285
Query: 224 AYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPEFNGE--- 280
A + +L+K G R T L +A+ + + VK +L + N +
Sbjct: 286 AQEGHVPVADVLIKHG--VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKL 343
Query: 281 GDTPLPVAAKFGHFNIANVLIK 302
G +PL AA+ GH +I +L+K
Sbjct: 344 GYSPLHQAAQQGHTDIVTLLLK 365
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 218 TPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPE- 276
TP+H AA ++ +LL+ +N + T L +AA + H TV +L
Sbjct: 82 TPLHCAARIGHTNMVKLLLENNAN--PNLATTAGHTPLHIAAREGHVETVLALLEKEASQ 139
Query: 277 --FNGEGDTPLPVAAKFGHFNIANVLIKRE 304
+G TPL VAAK+G +A +L++R+
Sbjct: 140 ACMTKKGFTPLHVAAKYGKVRVAELLLERD 169
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
GWTP+H AA+ +++ +LLK G++ + MT LRLAA H V+ +L
Sbjct: 47 GWTPLHLAAFNGHLEIVEVLLKNGADV--NAVDHAGMTPLRLAALFGHLEIVEVLLKNGA 104
Query: 276 EFNG---EGDTPLPVAAKFGHFNIANVLIK 302
+ N EG TPL +AA FGH I VL+K
Sbjct: 105 DVNANDMEGHTPLHLAAMFGHLEIVEVLLK 134
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 15/137 (10%)
Query: 106 LHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYE 165
L EA G V+IL D + + G T L+LAA + E+V LL+N V+
Sbjct: 18 LLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV 76
Query: 166 GPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAY 225
G T L AA+ F + + + +N + A+ + G TP+H AA
Sbjct: 77 DHAGMTPLRLAAL-FGHLEIVEVLLKNGADVNANDME-------------GHTPLHLAAM 122
Query: 226 YDQYQLIHMLLKRGSNC 242
+ +++ +LLK G++
Sbjct: 123 FGHLEIVEVLLKNGADV 139
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 104 TALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVS 163
T LH A +G++++V++L D + ++ G T L LAA + E+V LL+N V+
Sbjct: 49 TPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN 107
Query: 164 YEGPNGKTALHAAAM 178
G T LH AAM
Sbjct: 108 ANDMEGHTPLHLAAM 122
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 104 TALHEAVCHGNVQVVKILTGQDPDYPYSANNY-GKTQLYLAAKGRYSEMVIELLENSTSV 162
T L A G++++V++L D +AN+ G T L+LAA + E+V LL+N V
Sbjct: 82 TPLRLAALFGHLEIVEVLLKNGADV--NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV 139
Query: 163 SYEGPNGKTAL 173
+ + GKTA
Sbjct: 140 NAQDKFGKTAF 150
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 214 VIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSL 273
V+GWTP+H AAY+ +++ +LLK G++ Y S T L LAA H V+ +L
Sbjct: 45 VVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGS--TPLHLAAHFGHLEIVEVLLKN 102
Query: 274 NPEFNGEGD---TPLPVAAKFGHFNIANVLIK 302
+ N + D TPL +AA GH I VL+K
Sbjct: 103 GADVNAKDDNGITPLHLAANRGHLEIVEVLLK 134
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 15/137 (10%)
Query: 106 LHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYE 165
L EA G V+IL D +A+ G T L+LAA + E+V LL+N V+
Sbjct: 18 LLEAARAGRDDEVRILMANGADVN-AADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAY 76
Query: 166 GPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAY 225
G T LH AA HF + + + +N + A N G TP+H AA
Sbjct: 77 DTLGSTPLHLAA-HFGHLEIVEVLLKNGADVNAKDDN-------------GITPLHLAAN 122
Query: 226 YDQYQLIHMLLKRGSNC 242
+++ +LLK G++
Sbjct: 123 RGHLEIVEVLLKYGADV 139
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 104 TALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVS 163
T LH A G++++V++L D + + G T L+LAA + E+V LL+N V+
Sbjct: 49 TPLHLAAYWGHLEIVEVLLKNGADVN-AYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVN 107
Query: 164 YEGPNGKTALHAAA 177
+ NG T LH AA
Sbjct: 108 AKDDNGITPLHLAA 121
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 104 TALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVS 163
T LH A G++++V++L D +N G T L+LAA + E+V LL+ V+
Sbjct: 82 TPLHLAAHFGHLEIVEVLLKNGADVNAKDDN-GITPLHLAANRGHLEIVEVLLKYGADVN 140
Query: 164 YEGPNGKTAL 173
+ GKTA
Sbjct: 141 AQDKFGKTAF 150
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 215 IGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLN 274
+GWTP+H AAY+ +++ +LLK G++ +T L LAA + H V+ +L
Sbjct: 46 VGWTPLHLAAYFGHLEIVEVLLKNGADV--NADDSLGVTPLHLAADRGHLEVVEVLLKNG 103
Query: 275 PEFNG---EGDTPLPVAAKFGHFNIANVLIK 302
+ N G TPL +AA GH I VL+K
Sbjct: 104 ADVNANDHNGFTPLHLAANIGHLEIVEVLLK 134
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 19/139 (13%)
Query: 106 LHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYE 165
L EA G V+IL D S ++ G T L+LAA + E+V LL+N V+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAS-DHVGWTPLHLAAYFGHLEIVEVLLKNGADVNAD 76
Query: 166 GPNGKTALHAAA--MHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYA 223
G T LH AA H + L+ +N + A+ N G+TP+H A
Sbjct: 77 DSLGVTPLHLAADRGHLEVVEVLL---KNGADVNANDHN-------------GFTPLHLA 120
Query: 224 AYYDQYQLIHMLLKRGSNC 242
A +++ +LLK G++
Sbjct: 121 ANIGHLEIVEVLLKHGADV 139
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 104 TALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVS 163
T LH A G++++V++L D + ++ G T L+LAA + E+V LL+N V+
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGADVN-ADDSLGVTPLHLAADRGHLEVVEVLLKNGADVN 107
Query: 164 YEGPNGKTALHAAA 177
NG T LH AA
Sbjct: 108 ANDHNGFTPLHLAA 121
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 104 TALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVS 163
T LH A G+++VV++L D + +N G T L+LAA + E+V LL++ V+
Sbjct: 82 TPLHLAADRGHLEVVEVLLKNGADVNANDHN-GFTPLHLAANIGHLEIVEVLLKHGADVN 140
Query: 164 YEGPNGKTAL 173
+ GKTA
Sbjct: 141 AQDKFGKTAF 150
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
GWTP+H AA++ +++ +LLK G++ +T L LAA + H V+ +L
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLKNGADV--NAKDSLGVTPLHLAARRGHLEIVEVLLKNGA 104
Query: 276 EFNGE---GDTPLPVAAKFGHFNIANVLIK 302
+ N G TPL +AAK GH I VL+K
Sbjct: 105 DVNASDSHGFTPLHLAAKRGHLEIVEVLLK 134
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 104 TALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVS 163
T LH A G++++V++L D S +++G T L+LAAK + E+V LL+N V+
Sbjct: 82 TPLHLAARRGHLEIVEVLLKNGADVNAS-DSHGFTPLHLAAKRGHLEIVEVLLKNGADVN 140
Query: 164 YEGPNGKTAL 173
+ GKTA
Sbjct: 141 AQDKFGKTAF 150
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 17/138 (12%)
Query: 106 LHEAVCHGNVQVVKILTGQDPDYPYSANNY-GKTQLYLAAKGRYSEMVIELLENSTSVSY 164
L EA G V+IL D +A ++ G T L+LAA + E+V LL+N V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADV--NARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNA 75
Query: 165 EGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAA 224
+ G T LH AA + + + +N + AS + G+TP+H AA
Sbjct: 76 KDSLGVTPLHLAARRGHL-EIVEVLLKNGADVNASDSH-------------GFTPLHLAA 121
Query: 225 YYDQYQLIHMLLKRGSNC 242
+++ +LLK G++
Sbjct: 122 KRGHLEIVEVLLKNGADV 139
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 104 TALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVS 163
T LH A G++++V++L D + ++ G T L+LAA+ + E+V LL+N V+
Sbjct: 49 TPLHLAAHFGHLEIVEVLLKNGADV-NAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVN 107
Query: 164 YEGPNGKTALHAAA 177
+G T LH AA
Sbjct: 108 ASDSHGFTPLHLAA 121
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
G+TP+H AA +++ +LLK G++ + +T L LAA H V+ +L
Sbjct: 47 GYTPLHLAASNGHLEIVEVLLKNGADV--NASDLTGITPLHLAAATGHLEIVEVLLKHGA 104
Query: 276 EFNG---EGDTPLPVAAKFGHFNIANVLIK 302
+ N +G TPL +AAK+GH I VL+K
Sbjct: 105 DVNAYDNDGHTPLHLAAKYGHLEIVEVLLK 134
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 15/137 (10%)
Query: 106 LHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYE 165
L EA G V+IL D + +N G T L+LAA + E+V LL+N V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-ATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNAS 76
Query: 166 GPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAY 225
G T LH AA + + I LL + + + G TP+H AA
Sbjct: 77 DLTGITPLHLAA------------ATGHLEIVEVLLKHGADV--NAYDNDGHTPLHLAAK 122
Query: 226 YDQYQLIHMLLKRGSNC 242
Y +++ +LLK G++
Sbjct: 123 YGHLEIVEVLLKHGADV 139
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 104 TALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVS 163
T LH A G++++V++L D + +N G T L+LAAK + E+V LL++ V+
Sbjct: 82 TPLHLAAATGHLEIVEVLLKHGADVN-AYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVN 140
Query: 164 YEGPNGKTAL 173
+ GKTA
Sbjct: 141 AQDKFGKTAF 150
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 20/172 (11%)
Query: 134 NYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENW 193
+ GK L A G+ E+ I L+ N V+ + +G T LH AA + V
Sbjct: 1 DLGKKLLEAARAGQDDEVRI-LMANGADVNAKDKDGYTPLHLAAREGHLEIVEV------ 53
Query: 194 VIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMT 253
++ A + +N K G+TP+H AA +++ +LLK G++ + T
Sbjct: 54 LLKAGADVNAKD--------KDGYTPLHLAAREGHLEIVEVLLKAGADV--NAKDKDGYT 103
Query: 254 ALRLAAGQRHARTVKTILSLNPEFNGE---GDTPLPVAAKFGHFNIANVLIK 302
L LAA + H V+ +L + N + G TP +A + GH +IA VL K
Sbjct: 104 PLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQK 155
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLEN 158
D + T LH A G++++V++L D + + G T L+LAA+ + E+V LL+
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 159 STSVSYEGPNGKTALHAAA 177
V+ + +G T LH AA
Sbjct: 91 GADVNAKDKDGYTPLHLAA 109
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLEN 158
D + T LH A G++++V++L D + + G T L+LAA+ + E+V LL+
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKA 123
Query: 159 STSVSYEGPNGKT 171
V+ + GKT
Sbjct: 124 GADVNAQDKFGKT 136
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
G TP+H AA Y +++ +LLK G++ S T L LAA H V+ +L
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGS--TPLHLAALIGHLEIVEVLLKHGA 104
Query: 276 EFNGE---GDTPLPVAAKFGHFNIANVLIK 302
+ N GDTPL +AA GH I VL+K
Sbjct: 105 DVNAVDTWGDTPLHLAAIMGHLEIVEVLLK 134
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 20/174 (11%)
Query: 132 ANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSE 191
++ GK L A G+ E+ I L+ N V+ +G T LH AA YG +
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRI-LMANGADVNATDASGLTPLHLAA---TYGHLEIVE-- 64
Query: 192 NWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSK 251
V++ N + I+ G TP+H AA +++ +LLK G++
Sbjct: 65 --VLLKHGADVNAIDIM-------GSTPLHLAALIGHLEIVEVLLKHGADV--NAVDTWG 113
Query: 252 MTALRLAAGQRHARTVKTILSLNPEFNGE---GDTPLPVAAKFGHFNIANVLIK 302
T L LAA H V+ +L + N + G T ++ G+ ++A +L K
Sbjct: 114 DTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
G TP+H AA Y +++ +LLK G++ S T L LAA H V+ +L
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGS--TPLHLAALIGHLEIVEVLLKHGA 104
Query: 276 EFNGE---GDTPLPVAAKFGHFNIANVLIK 302
+ N GDTPL +AA GH I VL+K
Sbjct: 105 DVNAVDTWGDTPLHLAAIMGHLEIVEVLLK 134
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 74/174 (42%), Gaps = 20/174 (11%)
Query: 132 ANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSE 191
++ GK L A G+ E+ I L+ N V+ +G T LH AA YG +
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRI-LMANGADVNATDASGLTPLHLAA---TYGHLEIVE-- 64
Query: 192 NWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSK 251
V++ N + I G TP+H AA +++ +LLK G++
Sbjct: 65 --VLLKHGADVNAIDI-------XGSTPLHLAALIGHLEIVEVLLKHGADV--NAVDTWG 113
Query: 252 MTALRLAAGQRHARTVKTILSLNPEFNGE---GDTPLPVAAKFGHFNIANVLIK 302
T L LAA H V+ +L + N + G T ++ G+ ++A +L K
Sbjct: 114 DTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 59/145 (40%), Gaps = 31/145 (21%)
Query: 106 LHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYE 165
L EA G V+IL D + + G T L+LAA + E+V LL++ V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI 76
Query: 166 GPNGKTALHAAAM--HFYYGKCL------VCSSENWVIIAASLLNNKVIILKPLFVVIGW 217
G T LH AA+ H + L V + + W G
Sbjct: 77 DIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTW----------------------GD 114
Query: 218 TPIHYAAYYDQYQLIHMLLKRGSNC 242
TP+H AA +++ +LLK G++
Sbjct: 115 TPLHLAAIMGHLEIVEVLLKHGADV 139
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 20/174 (11%)
Query: 132 ANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSE 191
++ GK L A G+ E+ I L+ N V+ E +GKT LH AA+ + V
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRI-LMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKH 69
Query: 192 NWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSK 251
+ AA + G TP+H AA Y +++ +LLK G++
Sbjct: 70 GADVNAADKM--------------GDTPLHLAALYGHLEIVEVLLKNGADV--NATDTYG 113
Query: 252 MTALRLAAGQRHARTVKTILSLNPEFNGE---GDTPLPVAAKFGHFNIANVLIK 302
T L LAA H V+ +L + N + G T ++ G+ ++A +L K
Sbjct: 114 FTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 15/137 (10%)
Query: 106 LHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYE 165
L EA G V+IL D + ++ GKT L+LAA + E+V LL++ V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-AEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAA 76
Query: 166 GPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAY 225
G T LH AA+ YG + I+ L N + + G+TP+H AA
Sbjct: 77 DKMGDTPLHLAAL---YG--------HLEIVEVLLKNGADVNATDTY---GFTPLHLAAD 122
Query: 226 YDQYQLIHMLLKRGSNC 242
+++ +LLK G++
Sbjct: 123 AGHLEIVEVLLKYGADV 139
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLEN 158
DD T LH A G++++V++L D +A+ G T L+LAA + E+V LL+N
Sbjct: 44 DDSGKTPLHLAAIKGHLEIVEVLLKHGADVN-AADKMGDTPLHLAALYGHLEIVEVLLKN 102
Query: 159 STSVSYEGPNGKTALHAAA 177
V+ G T LH AA
Sbjct: 103 GADVNATDTYGFTPLHLAA 121
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 98 ADDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLE 157
AD +T LH A +G++++V++L D + + YG T L+LAA + E+V LL+
Sbjct: 76 ADKMGDTPLHLAALYGHLEIVEVLLKNGADVN-ATDTYGFTPLHLAADAGHLEIVEVLLK 134
Query: 158 NSTSVSYEGPNGKTAL 173
V+ + GKTA
Sbjct: 135 YGADVNAQDKFGKTAF 150
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
G+TP+H AA +++ +LLK G++ + T L LAA + H V+ +L
Sbjct: 47 GYTPLHLAAREGHLEIVEVLLKAGADV--NAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 104
Query: 276 EFNG---EGDTPLPVAAKFGHFNIANVLIK 302
+ N +G TPL +AA+ GH I VL+K
Sbjct: 105 DVNAKDKDGYTPLHLAAREGHLEIVEVLLK 134
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 15/137 (10%)
Query: 106 LHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYE 165
L EA G V+IL D + + G T L+LAA+ + E+V LL+ V+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 76
Query: 166 GPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAY 225
+G T LH AA + V ++ A + +N K G+TP+H AA
Sbjct: 77 DKDGYTPLHLAAREGHLEIVEV------LLKAGADVNAK--------DKDGYTPLHLAAR 122
Query: 226 YDQYQLIHMLLKRGSNC 242
+++ +LLK G++
Sbjct: 123 EGHLEIVEVLLKAGADV 139
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLEN 158
D + T LH A G++++V++L D + + G T L+LAA+ + E+V LL+
Sbjct: 44 DKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKA 102
Query: 159 STSVSYEGPNGKTALHAAA 177
V+ + +G T LH AA
Sbjct: 103 GADVNAKDKDGYTPLHLAA 121
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLEN 158
D + T LH A G++++V++L D + + G T L+LAA+ + E+V LL+
Sbjct: 77 DKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKA 135
Query: 159 STSVSYEGPNGKTAL 173
V+ + GKTA
Sbjct: 136 GADVNAQDKFGKTAF 150
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 12/67 (17%)
Query: 239 GSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPEFNG---EGDTPLPVAAKFGHFN 295
GS+ K + ++ AGQ V+ +++ + N +G TPL +AA+ GH
Sbjct: 11 GSDLGKKLLEAAR-------AGQDD--EVRILMANGADVNAKDKDGYTPLHLAAREGHLE 61
Query: 296 IANVLIK 302
I VL+K
Sbjct: 62 IVEVLLK 68
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
G+TP+H AA +++ +LLK G++ + T L LAA + H V+ +L
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGADV--NAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 276 EFNG---EGDTPLPVAAKFGHFNIANVLIK 302
+ N +G TPL +AA+ GH I VL+K
Sbjct: 93 DVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 15/137 (10%)
Query: 106 LHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYE 165
L EA G V+IL D + + G T L+LAA+ + E+V LL+ V+ +
Sbjct: 6 LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 166 GPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAY 225
+G T LH AA + V ++ A + +N K G+TP+H AA
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEV------LLKAGADVNAK--------DKDGYTPLHLAAR 110
Query: 226 YDQYQLIHMLLKRGSNC 242
+++ +LLK G++
Sbjct: 111 EGHLEIVEVLLKAGADV 127
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLEN 158
D + T LH A G++++V++L D + + G T L+LAA+ + E+V LL+
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 159 STSVSYEGPNGKTALHAAA 177
V+ + +G T LH AA
Sbjct: 91 GADVNAKDKDGYTPLHLAA 109
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLEN 158
D + T LH A G++++V++L D + + G T L+LAA+ + E+V LL+
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKA 123
Query: 159 STSVSYEGPNGKT 171
V+ + GKT
Sbjct: 124 GADVNAQDKFGKT 136
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
G TP+H AA +++ +LLK G++ S T L LAA + H V+ +L
Sbjct: 47 GDTPLHLAARVGHLEIVEVLLKNGADV--NALDFSGSTPLHLAAKRGHLEIVEVLLKYGA 104
Query: 276 EFNGE---GDTPLPVAAKFGHFNIANVLIK 302
+ N + G TPL +AA GH I VL+K
Sbjct: 105 DVNADDTIGSTPLHLAADTGHLEIVEVLLK 134
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 15/137 (10%)
Query: 106 LHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYE 165
L EA G V+IL D + + YG T L+LAA+ + E+V LL+N V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-AEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNAL 76
Query: 166 GPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAY 225
+G T LH AA + V + A IG TP+H AA
Sbjct: 77 DFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADD--------------TIGSTPLHLAAD 122
Query: 226 YDQYQLIHMLLKRGSNC 242
+++ +LLK G++
Sbjct: 123 TGHLEIVEVLLKYGADV 139
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 12/67 (17%)
Query: 239 GSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPEFNGE---GDTPLPVAAKFGHFN 295
GS+ K + ++ AGQ V+ +++ + N E GDTPL +AA+ GH
Sbjct: 11 GSDLGKKLLEAAR-------AGQDD--EVRILMANGADVNAEDTYGDTPLHLAARVGHLE 61
Query: 296 IANVLIK 302
I VL+K
Sbjct: 62 IVEVLLK 68
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 103 NTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSV 162
+T LH A G++++V++L D + + G T L+LAAK + E+V LL+ V
Sbjct: 48 DTPLHLAARVGHLEIVEVLLKNGADVN-ALDFSGSTPLHLAAKRGHLEIVEVLLKYGADV 106
Query: 163 SYEGPNGKTALHAAA 177
+ + G T LH AA
Sbjct: 107 NADDTIGSTPLHLAA 121
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 103 NTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSV 162
+T LH A G++++V++L D + + G T L+LAA + E+V LL+ V
Sbjct: 81 STPLHLAAKRGHLEIVEVLLKYGADVN-ADDTIGSTPLHLAADTGHLEIVEVLLKYGADV 139
Query: 163 SYEGPNGKTAL 173
+ + GKTA
Sbjct: 140 NAQDKFGKTAF 150
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 67/139 (48%), Gaps = 19/139 (13%)
Query: 104 TALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVS 163
T LH A +G+++VVK+L D N G+T L+LAA+ + E+V LLE V+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 164 YEGPNGKTALHAAAM--HFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIH 221
+ NG+T LH AA H K L+ E + A N G TP+H
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLL---EAGADVNAKDKN-------------GRTPLH 106
Query: 222 YAAYYDQYQLIHMLLKRGS 240
AA +++ +LL+ G+
Sbjct: 107 LAARNGHLEVVKLLLEAGA 125
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 64/139 (46%), Gaps = 20/139 (14%)
Query: 136 GKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAM--HFYYGKCLVCSSENW 193
G+T L+LAA+ + E+V LLE V+ + NG+T LH AA H K L+ E
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL---EAG 58
Query: 194 VIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMT 253
+ A N G TP+H AA +++ +LL+ G++ ++ T
Sbjct: 59 ADVNAKDKN-------------GRTPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRT 103
Query: 254 ALRLAAGQRHARTVKTILS 272
L LAA H VK +L
Sbjct: 104 PLHLAARNGHLEVVKLLLE 122
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
G TP+H AA +++ +LL+ G++ ++ T L LAA H VK +L
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 276 EFNGE---GDTPLPVAAKFGHFNIANVLIK 302
+ N + G TPL +AA+ GH + +L++
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
G TP+H AA +++ +LL+ G++ ++ T L LAA H VK +L
Sbjct: 35 GRTPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Query: 276 EFNGE---GDTPLPVAAKFGHFNIANVLIK 302
+ N + G TPL +AA+ GH + +L++
Sbjct: 93 DVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLEN 158
D T LH A +G+++VVK+L D N G+T L+LAA+ + E+V LLE
Sbjct: 32 DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEA 90
Query: 159 STSVSYEGPNGKTALHAAA 177
V+ + NG+T LH AA
Sbjct: 91 GADVNAKDKNGRTPLHLAA 109
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 19/168 (11%)
Query: 139 QLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAA 198
+L AA+ + V +LLEN V+ +GKT LH AA + + + S+ A
Sbjct: 7 RLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK 66
Query: 199 SLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLA 258
G TP+H AA +++ +LL +G++ T L LA
Sbjct: 67 D--------------SDGKTPLHLAAENGHKEVVKLLLSQGADP--NAKDSDGKTPLHLA 110
Query: 259 AGQRHARTVKTILSLNPEFN---GEGDTPLPVAAKFGHFNIANVLIKR 303
A H VK +LS + N +G TPL +A + G+ + +L K+
Sbjct: 111 AENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 19/145 (13%)
Query: 98 ADDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLE 157
+D + T LH A +G+ +VVK+L Q D P + ++ GKT L+LAA+ + E+V LL
Sbjct: 33 SDSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLLS 91
Query: 158 NSTSVSYEGPNGKTALHAAAM--HFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVI 215
+ + +GKT LH AA H K L+ + +
Sbjct: 92 QGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSD---------------- 135
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGS 240
G TP+ A + +++ +L K+G
Sbjct: 136 GRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 17/163 (10%)
Query: 108 EAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGP 167
EA +GN VK L D ++++ GKT L+LAA+ + E+V LL + +
Sbjct: 10 EAAENGNKDRVKDLLENGADV-NASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDS 68
Query: 168 NGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYD 227
+GKT LH AA + + + S+ A G TP+H AA
Sbjct: 69 DGKTPLHLAAENGHKEVVKLLLSQGADPNAKD--------------SDGKTPLHLAAENG 114
Query: 228 QYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTI 270
+++ +LL +G++ T L LA + VK +
Sbjct: 115 HKEVVKLLLSQGADP--NTSDSDGRTPLDLAREHGNEEVVKLL 155
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
G TP+H AA+ +++ +LLK G++ T L LAA H V+ +L
Sbjct: 47 GSTPLHLAAWIGHPEIVEVLLKHGADV--NARDTDGWTPLHLAADNGHLEIVEVLLKYGA 104
Query: 276 EFNGE---GDTPLPVAAKFGHFNIANVLIK 302
+ N + G TPL +AA GH I VL+K
Sbjct: 105 DVNAQDAYGLTPLHLAADRGHLEIVEVLLK 134
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 75/178 (42%), Gaps = 28/178 (15%)
Query: 132 ANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSE 191
++ GK L A G+ E+ I L+ N V+ G T LH AA
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRI-LMANGADVNAHDDQGSTPLHLAA-------------- 55
Query: 192 NWV----IIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCC 247
W+ I+ L + + + GWTP+H AA +++ +LLK G++
Sbjct: 56 -WIGHPEIVEVLLKHGADVNARD---TDGWTPLHLAADNGHLEIVEVLLKYGADV--NAQ 109
Query: 248 QRSKMTALRLAAGQRHARTVKTILSLNPEFNGE---GDTPLPVAAKFGHFNIANVLIK 302
+T L LAA + H V+ +L + N + G T ++ G+ ++A +L K
Sbjct: 110 DAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 15/137 (10%)
Query: 106 LHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYE 165
L EA G V+IL D + ++ G T L+LAA + E+V LL++ V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNAR 76
Query: 166 GPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAY 225
+G T LH AA + + I+ L + + + G TP+H AA
Sbjct: 77 DTDGWTPLHLAADNGHL-----------EIVEVLLKYGADVNAQDAY---GLTPLHLAAD 122
Query: 226 YDQYQLIHMLLKRGSNC 242
+++ +LLK G++
Sbjct: 123 RGHLEIVEVLLKHGADV 139
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLEN 158
DD+ +T LH A G+ ++V++L D + + G T L+LAA + E+V LL+
Sbjct: 44 DDQGSTPLHLAAWIGHPEIVEVLLKHGADV-NARDTDGWTPLHLAADNGHLEIVEVLLKY 102
Query: 159 STSVSYEGPNGKTALHAAA 177
V+ + G T LH AA
Sbjct: 103 GADVNAQDAYGLTPLHLAA 121
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLEN 158
D + T LH A +G++++V++L D + + YG T L+LAA + E+V LL++
Sbjct: 77 DTDGWTPLHLAADNGHLEIVEVLLKYGADV-NAQDAYGLTPLHLAADRGHLEIVEVLLKH 135
Query: 159 STSVSYEGPNGKTAL 173
V+ + GKTA
Sbjct: 136 GADVNAQDKFGKTAF 150
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
G TP+HYAA +++ +L+ +G++ T L AA + H VK ++S
Sbjct: 37 GRTPLHYAAKEGHKEIVKLLISKGADV--NAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 94
Query: 276 EFNG---EGDTPLPVAAKFGHFNIANVLIKR 303
+ N +G TPL AAK GH I +LI +
Sbjct: 95 DVNAKDSDGRTPLHYAAKEGHKEIVKLLISK 125
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 23/139 (16%)
Query: 108 EAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGP 167
EA +GN VK L D S ++ G+T L+ AAK + E+V L+ V+ +
Sbjct: 10 EAAENGNKDRVKDLIENGADVNASDSD-GRTPLHYAAKEGHKEIVKLLISKGADVNAKDS 68
Query: 168 NGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFV----VIGWTPIHYA 223
+G+T LH AA + K +V K++I K V G TP+HYA
Sbjct: 69 DGRTPLHYAAKEGH--KEIV----------------KLLISKGADVNAKDSDGRTPLHYA 110
Query: 224 AYYDQYQLIHMLLKRGSNC 242
A +++ +L+ +G++
Sbjct: 111 AKEGHKEIVKLLISKGADV 129
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 23/147 (15%)
Query: 98 ADDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLE 157
+D + T LH A G+ ++VK+L + D + ++ G+T L+ AAK + E+V L+
Sbjct: 33 SDSDGRTPLHYAAKEGHKEIVKLLISKGADV-NAKDSDGRTPLHYAAKEGHKEIVKLLIS 91
Query: 158 NSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVI-- 215
V+ + +G+T LH AA + K +V K++I K V
Sbjct: 92 KGADVNAKDSDGRTPLHYAAKEGH--KEIV----------------KLLISKGADVNTSD 133
Query: 216 --GWTPIHYAAYYDQYQLIHMLLKRGS 240
G TP+ A + +++ +L K+G
Sbjct: 134 SDGRTPLDLAREHGNEEIVKLLEKQGG 160
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
G TP+H AA +++ +LLK G++ T L LAA H V+ +L
Sbjct: 47 GLTPLHLAAVSGHLEIVEVLLKHGADV--DAADVYGFTPLHLAAMTGHLEIVEVLLKYGA 104
Query: 276 E---FNGEGDTPLPVAAKFGHFNIANVLIK 302
+ F+ G TPL +AA GH I VL+K
Sbjct: 105 DVNAFDMTGSTPLHLAADEGHLEIVEVLLK 134
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 20/169 (11%)
Query: 132 ANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSE 191
++ GK L A G+ E+ I L+ N V+ G T LH AA+ + V
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRI-LIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKH 69
Query: 192 NWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSK 251
+ AA V G+TP+H AA +++ +LLK G++ + S
Sbjct: 70 GADVDAAD--------------VYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGS- 114
Query: 252 MTALRLAAGQRHARTVKTILSLNPEFNGE---GDTPLPVAAKFGHFNIA 297
T L LAA + H V+ +L + N + G T ++ G+ ++A
Sbjct: 115 -TPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 58/137 (42%), Gaps = 15/137 (10%)
Query: 106 LHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYE 165
L EA G V+IL D + +N G T L+LAA + E+V LL++ V
Sbjct: 18 LLEAARAGQDDEVRILIANGADVN-AVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAA 76
Query: 166 GPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAY 225
G T LH AAM + V + A F + G TP+H AA
Sbjct: 77 DVYGFTPLHLAAMTGHLEIVEVLLKYGADVNA--------------FDMTGSTPLHLAAD 122
Query: 226 YDQYQLIHMLLKRGSNC 242
+++ +LLK G++
Sbjct: 123 EGHLEIVEVLLKYGADV 139
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 99 DDENNTALHEAVCHGNVQVVKILT--GQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELL 156
D+ T LH A G++++V++L G D D +A+ YG T L+LAA + E+V LL
Sbjct: 44 DNTGLTPLHLAAVSGHLEIVEVLLKHGADVD---AADVYGFTPLHLAAMTGHLEIVEVLL 100
Query: 157 ENSTSVSYEGPNGKTALHAAA 177
+ V+ G T LH AA
Sbjct: 101 KYGADVNAFDMTGSTPLHLAA 121
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 20/174 (11%)
Query: 132 ANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSE 191
++ G+ L A G+ E+ I L+ N V+ G T LH AA Y G
Sbjct: 11 GSDLGRKLLEAARAGQDDEVRI-LMANGADVNAADNTGTTPLHLAA---YSGHL------ 60
Query: 192 NWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSK 251
I+ L + + +F G+TP+H AAY+ +++ +LLK G++
Sbjct: 61 --EIVEVLLKHGADVDASDVF---GYTPLHLAAYWGHLEIVEVLLKNGADV--NAMDSDG 113
Query: 252 MTALRLAAGQRHARTVKTILSLNPEFNGE---GDTPLPVAAKFGHFNIANVLIK 302
MT L LAA + V+ +L + N + G T ++ G+ ++A +L K
Sbjct: 114 MTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 98 ADDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLE 157
AD+ T LH A G++++V++L D S + +G T L+LAA + E+V LL+
Sbjct: 43 ADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDAS-DVFGYTPLHLAAYWGHLEIVEVLLK 101
Query: 158 NSTSVSYEGPNGKTALHAAAMHFY 181
N V+ +G T LH AA Y
Sbjct: 102 NGADVNAMDSDGMTPLHLAAKWGY 125
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
G TP+H AA +++ +LL+ G++ + T L LAA H V+ +L
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLRNGADV--NAVDTNGTTPLHLAASLGHLEIVEVLLKYGA 92
Query: 276 EFNGE---GDTPLPVAAKFGHFNIANVLIK 302
+ N + G TPL +AA +GH I VL+K
Sbjct: 93 DVNAKDATGITPLYLAAYWGHLEIVEVLLK 122
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 19/139 (13%)
Query: 106 LHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYE 165
L EA G V+IL D + ++YG+T L++AA + E+V LL N V+
Sbjct: 6 LLEAARAGQDDEVRILMANGAD-ANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAV 64
Query: 166 GPNGKTALHAAAM--HFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYA 223
NG T LH AA H + L+ + +N K G TP++ A
Sbjct: 65 DTNGTTPLHLAASLGHLEIVEVLLKYGAD--------VNAK--------DATGITPLYLA 108
Query: 224 AYYDQYQLIHMLLKRGSNC 242
AY+ +++ +LLK G++
Sbjct: 109 AYWGHLEIVEVLLKHGADV 127
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 223 AAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPEFNG--- 279
AA Q + +L+ G++ Y T L +AA H V+ +L + N
Sbjct: 9 AARAGQDDEVRILMANGADANAY--DHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDT 66
Query: 280 EGDTPLPVAAKFGHFNIANVLIK 302
G TPL +AA GH I VL+K
Sbjct: 67 NGTTPLHLAASLGHLEIVEVLLK 89
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 8/108 (7%)
Query: 66 LEICPSVLHKSMPKAILRSTLLRNLAILIYCPADDENNTALHEAVCHGNVQVVKILTGQD 125
L + +V H + + +LR+ N D T LH A G++++V++L
Sbjct: 39 LHMAAAVGHLEIVEVLLRNGADVN-------AVDTNGTTPLHLAASLGHLEIVEVLLKYG 91
Query: 126 PDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTAL 173
D + + G T LYLAA + E+V LL++ V+ + GKTA
Sbjct: 92 ADVN-AKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAF 138
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 215 IGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLN 274
+G TP+H AA +++ +LLK G++ + T L LAA H V+ +L
Sbjct: 46 LGHTPLHLAAKTGHLEIVEVLLKYGADVNAW--DNYGATPLHLAADNGHLEIVEVLLKHG 103
Query: 275 PEFNG---EGDTPLPVAAKFGHFNIANVLIK 302
+ N EG TPL +AA GH I VL+K
Sbjct: 104 ADVNAKDYEGFTPLHLAAYDGHLEIVEVLLK 134
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 104 TALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVS 163
T LH A G++++V++L D + +NYG T L+LAA + E+V LL++ V+
Sbjct: 49 TPLHLAAKTGHLEIVEVLLKYGADVN-AWDNYGATPLHLAADNGHLEIVEVLLKHGADVN 107
Query: 164 YEGPNGKTALHAAA 177
+ G T LH AA
Sbjct: 108 AKDYEGFTPLHLAA 121
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 15/137 (10%)
Query: 106 LHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYE 165
L EA G V+IL D + + G T L+LAAK + E+V LL+ V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-ATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAW 76
Query: 166 GPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAY 225
G T LH AA + + + I LL + + + G+TP+H AAY
Sbjct: 77 DNYGATPLHLAADNGH------------LEIVEVLLKHGADVNAKDYE--GFTPLHLAAY 122
Query: 226 YDQYQLIHMLLKRGSNC 242
+++ +LLK G++
Sbjct: 123 DGHLEIVEVLLKYGADV 139
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 223 AAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPEFNGE-- 280
AA Q + +L+ G++ T L LAA H V+ +L + N
Sbjct: 21 AARAGQDDEVRILMANGADV--NATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDN 78
Query: 281 -GDTPLPVAAKFGHFNIANVLIK 302
G TPL +AA GH I VL+K
Sbjct: 79 YGATPLHLAADNGHLEIVEVLLK 101
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNY-GKTQLYLAAKGRYSEMVIELLE 157
D+ T LH A +G++++V++L D +A +Y G T L+LAA + E+V LL+
Sbjct: 77 DNYGATPLHLAADNGHLEIVEVLLKHGADV--NAKDYEGFTPLHLAAYDGHLEIVEVLLK 134
Query: 158 NSTSVSYEGPNGKTAL 173
V+ + GKTA
Sbjct: 135 YGADVNAQDKFGKTAF 150
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 15/137 (10%)
Query: 106 LHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYE 165
L EA G V+IL D + +N G T L+LAA E+V LL+N V+
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDN-GLTPLHLAAANGQLEIVEVLLKNGADVNAS 68
Query: 166 GPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAY 225
G T LH AA Y G + LL + + + GWTP+H AA
Sbjct: 69 DSAGITPLHLAA---YDGHLEIVEV---------LLKHGADV--NAYDRAGWTPLHLAAL 114
Query: 226 YDQYQLIHMLLKRGSNC 242
Q +++ +LLK G++
Sbjct: 115 SGQLEIVEVLLKHGADV 131
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 73/170 (42%), Gaps = 20/170 (11%)
Query: 134 NYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENW 193
+ GK L AA G+ E+ I L+ N V+ NG T LH AA +
Sbjct: 5 DLGKKLLEAAAAGQDDEVRI-LMANGADVNATDDNGLTPLHLAA------------ANGQ 51
Query: 194 VIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMT 253
+ I LL N + G TP+H AAY +++ +LLK G++ Y R+ T
Sbjct: 52 LEIVEVLLKNGADVNASDSA--GITPLHLAAYDGHLEIVEVLLKHGADVNAY--DRAGWT 107
Query: 254 ALRLAAGQRHARTVKTILSLNPEFNGE---GDTPLPVAAKFGHFNIANVL 300
L LAA V+ +L + N + G T ++ G ++A +L
Sbjct: 108 PLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
G TP+H AA Q +++ +LLK G++ + +T L LAA H V+ +L
Sbjct: 39 GLTPLHLAAANGQLEIVEVLLKNGADV--NASDSAGITPLHLAAYDGHLEIVEVLLKHGA 96
Query: 276 EFNG---EGDTPLPVAAKFGHFNIANVLIK 302
+ N G TPL +AA G I VL+K
Sbjct: 97 DVNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLEN 158
DD T LH A +G +++V++L D S ++ G T L+LAA + E+V LL++
Sbjct: 36 DDNGLTPLHLAAANGQLEIVEVLLKNGADVNAS-DSAGITPLHLAAYDGHLEIVEVLLKH 94
Query: 159 STSVSYEGPNGKTALHAAAM 178
V+ G T LH AA+
Sbjct: 95 GADVNAYDRAGWTPLHLAAL 114
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
GWTP+H AAY +++ +LLK G++ Q T L LAA H V+ +L
Sbjct: 80 GWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQ--GYTPLHLAAEDGHLEIVEVLLKYGA 137
Query: 276 EFNGE---GDTPLPVAAKFGHFNIANVLIK 302
+ N + G T ++ G+ ++A +L K
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 104 TALHEAVCHGNVQVVKILTGQDPDYPYSANNY-GKTQLYLAAKGRYSEMVIELLENSTSV 162
T LH A G++++V++L D +A +Y G T L+LAA+ + E+V LL+ V
Sbjct: 82 TPLHLAAYRGHLEIVEVLLKYGADV--NAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADV 139
Query: 163 SYEGPNGKTAL 173
+ + GKTA
Sbjct: 140 NAQDKFGKTAF 150
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 104 TALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVS 163
T LH V +G+++++++L D S + G T L+LAA + E+V LL+ V+
Sbjct: 49 TPLHLVVNNGHLEIIEVLLKYAADVNAS-DKSGWTPLHLAAYRGHLEIVEVLLKYGADVN 107
Query: 164 YEGPNGKTALHAAA 177
G T LH AA
Sbjct: 108 AMDYQGYTPLHLAA 121
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
G TP+HYAA +++ +LL +G++ T L AA H VK +LS
Sbjct: 37 GRTPLHYAAENGHKEIVKLLLSKGADP--NAKDSDGRTPLHYAAENGHKEIVKLLLSKGA 94
Query: 276 EFNG---EGDTPLPVAAKFGHFNIANVLIKR 303
+ N +G TPL AA+ GH I +L+ +
Sbjct: 95 DPNAKDSDGRTPLHYAAENGHKEIVKLLLSK 125
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 17/163 (10%)
Query: 108 EAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGP 167
EA +GN VK L D P ++++ G+T L+ AA+ + E+V LL + +
Sbjct: 10 EAAENGNKDRVKDLLENGAD-PNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDS 68
Query: 168 NGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYD 227
+G+T LH AA + + K +V ++ + N K G TP+HYAA
Sbjct: 69 DGRTPLHYAAENGH--KEIV----KLLLSKGADPNAK--------DSDGRTPLHYAAENG 114
Query: 228 QYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTI 270
+++ +LL +G++ T L LA + VK +
Sbjct: 115 HKEIVKLLLSKGADP--NTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 19/145 (13%)
Query: 98 ADDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLE 157
+D + T LH A +G+ ++VK+L + D P + ++ G+T L+ AA+ + E+V LL
Sbjct: 33 SDSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLLLS 91
Query: 158 NSTSVSYEGPNGKTALHAAAM--HFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVI 215
+ + +G+T LH AA H K L+ + +
Sbjct: 92 KGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSD---------------- 135
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGS 240
G TP+ A + +++ +L K+G
Sbjct: 136 GRTPLDLAREHGNEEIVKLLEKQGG 160
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
G +P+H AA + + LI +LLK G+N + L LA Q H + VK +L N
Sbjct: 86 GSSPLHVAALHGRADLIPLLLKHGANAGAR--NADQAVPLHLACQQGHFQVVKCLLDSNA 143
Query: 276 EFNGE---GDTPLPVAAKFGHFNIANVLIK 302
+ N + G+TPL A GH + +L++
Sbjct: 144 KPNKKDLSGNTPLIYACSGGHHELVALLLQ 173
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 106 LHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYE 165
LH A G+ QVVK L + P + G T L A G + E+V LL++ S++
Sbjct: 123 LHLACQQGHFQVVKCLLDSNA-KPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINAS 181
Query: 166 GPNGKTALHAAAM 178
G TALH A +
Sbjct: 182 NNKGNTALHEAVI 194
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 20/138 (14%)
Query: 136 GKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAM--HFYYGKCLVCSSENW 193
G + L++AA ++++ LL++ + + LH A HF KCL+ S+
Sbjct: 86 GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP 145
Query: 194 VIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMT 253
N K + G TP+ YA ++L+ +LL+ G++ T
Sbjct: 146 --------NKKDLS--------GNTPLIYACSGGHHELVALLLQHGASI--NASNNKGNT 187
Query: 254 ALRLAAGQRHARTVKTIL 271
AL A ++H V+ +L
Sbjct: 188 ALHEAVIEKHVFVVELLL 205
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 45.8 bits (107), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 104 TALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVS 163
T LH A +G+++VVK+L D N G+T L+LAA+ + E+V LLE V+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 164 YEGPNGKTALHAAA 177
+ NG+T LH AA
Sbjct: 63 AKDKNGRTPLHLAA 76
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
G TP+H AA +++ +LL+ G++ ++ T L LAA H VK +L
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAK--DKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 276 EFNGE---GDTPLPVAAKFGHFNIANVLIK 302
+ N + G TPL +AA+ GH + +L++
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 37.7 bits (86), Expect = 0.008, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 18/107 (16%)
Query: 136 GKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAM--HFYYGKCLVCSSENW 193
G+T L+LAA+ + E+V LLE V+ + NG+T LH AA H K L+ + +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD- 60
Query: 194 VIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGS 240
+ A N G TP+H AA +++ +LL+ G+
Sbjct: 61 --VNAKDKN-------------GRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 33.9 bits (76), Expect = 0.12, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLE 157
D T LH A +G+++VVK+L D N G+T L+LAA+ + E+V LLE
Sbjct: 32 DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLE 89
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
G TP+H+AA +++ +L+ +G++ T L AA H VK ++S
Sbjct: 37 GRTPLHHAAENGHKEVVKLLISKGADV--NAKDSDGRTPLHHAAENGHKEVVKLLISKGA 94
Query: 276 EFNG---EGDTPLPVAAKFGHFNIANVLIKR 303
+ N +G TPL AA+ GH + +LI +
Sbjct: 95 DVNAKDSDGRTPLHHAAENGHKEVVKLLISK 125
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 23/147 (15%)
Query: 98 ADDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLE 157
+D + T LH A +G+ +VVK+L + D + ++ G+T L+ AA+ + E+V L+
Sbjct: 33 SDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLIS 91
Query: 158 NSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVI-- 215
V+ + +G+T LH AA + + K +V K++I K V
Sbjct: 92 KGADVNAKDSDGRTPLHHAAENGH--KEVV----------------KLLISKGADVNTSD 133
Query: 216 --GWTPIHYAAYYDQYQLIHMLLKRGS 240
G TP+ A + +++ +L K+G
Sbjct: 134 SDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 25/167 (14%)
Query: 108 EAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGP 167
EA +GN VK L D S ++ G+T L+ AA+ + E+V L+ V+ +
Sbjct: 10 EAAENGNKDRVKDLIENGADVNAS-DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS 68
Query: 168 NGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFV----VIGWTPIHYA 223
+G+T LH AA + + K +V K++I K V G TP+H+A
Sbjct: 69 DGRTPLHHAAENGH--KEVV----------------KLLISKGADVNAKDSDGRTPLHHA 110
Query: 224 AYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTI 270
A +++ +L+ +G++ T L LA + VK +
Sbjct: 111 AENGHKEVVKLLISKGADV--NTSDSDGRTPLDLAREHGNEEVVKLL 155
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 218 TPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILS----L 273
+P+H AA + HML++ G+N C + T L AA H VK ++ +
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDT--CSEDQRTPLMEAAENNHLEAVKYLIKAGALV 70
Query: 274 NPEFNGEGDTPLPVAAKFGHFNIANVLIKREKL 306
+P+ + EG T L +AAK GH+ + L+ ++
Sbjct: 71 DPK-DAEGSTCLHLAAKKGHYEVVQYLLSNGQM 102
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 89/214 (41%), Gaps = 19/214 (8%)
Query: 106 LHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYE 165
LH A G+V + +L + + + +T L AA+ + E V L++ V +
Sbjct: 15 LHAAAEAGHVDICHMLVQAGANIDTCSEDQ-RTPLMEAAENNHLEAVKYLIKAGALVDPK 73
Query: 166 GPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAY 225
G T LH AA +Y + LL+N + + GWTP+ +A
Sbjct: 74 DAEGSTCLHLAAKKGHYE------------VVQYLLSNGQMDVNCQDDG-GWTPMIWATE 120
Query: 226 YDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPEF---NGEGD 282
Y L+ +LL +GS+ + L AA + +L+ + N GD
Sbjct: 121 YKHVDLVKLLLSKGSDINIR--DNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGD 178
Query: 283 TPLPVAAKFGHFNIANVLIKREKLAQHEDEELES 316
+PL +AA+ ++ + + R+ +++E E+
Sbjct: 179 SPLHIAARENRYDCVVLFLSRDSDVTLKNKEGET 212
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 14/145 (9%)
Query: 97 PADDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELL 156
P D E +T LH A G+ +VV+ L ++ G T + A + ++ ++V LL
Sbjct: 72 PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLL 131
Query: 157 ENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIG 216
+ ++ LH AA + C V IA LL K + + G
Sbjct: 132 SKGSDINIRDNEENICLHWAA----FSGC--------VDIAEILLAAKCDL--HAVNIHG 177
Query: 217 WTPIHYAAYYDQYQLIHMLLKRGSN 241
+P+H AA ++Y + + L R S+
Sbjct: 178 DSPLHIAARENRYDCVVLFLSRDSD 202
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
G TP+H AA YD +++ +LLK G++ + S T L LAA H V+ +L
Sbjct: 47 GNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGS--TPLHLAALFGHLEIVEVLLKHGA 104
Query: 276 EFNGE---GDTPLPVAAKFGHFNIANVLIK 302
+ N + G T ++ G+ ++A +L K
Sbjct: 105 DVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLEN 158
D + NT LH A + ++++V++L D + +N G T L+LAA + E+V LL++
Sbjct: 44 DRKGNTPLHLAADYDHLEIVEVLLKHGADVN-AHDNDGSTPLHLAALFGHLEIVEVLLKH 102
Query: 159 STSVSYEGPNGKTAL 173
V+ + GKTA
Sbjct: 103 GADVNAQDKFGKTAF 117
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 106 LHEAVCHGNVQVVKILTGQDPDYPYSANNY-GKTQLYLAAKGRYSEMVIELLENSTSVSY 164
L EA G V+IL D +AN+ G T L+LAA + E+V LL++ V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADV--NANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNA 75
Query: 165 EGPNGKTALHAAAM 178
+G T LH AA+
Sbjct: 76 HDNDGSTPLHLAAL 89
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
G TP+H AA + + LL +G++ + T L LAA HA VK +L+
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADV--NARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 276 EFNG---EGDTPLPVAAKFGHFNIANVL 300
+ N +G+TP +A K GH I +L
Sbjct: 67 DVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 101 ENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENST 160
+ NT LH A +G+ + VK L + D + + G T L+LAAK ++E+V LL
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKD-GNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 161 SVSYEGPNGKTALHAAAMHFYY 182
V+ +G T H A + ++
Sbjct: 67 DVNARSKDGNTPEHLAKKNGHH 88
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 253 TALRLAAGQRHARTVKTILSLNPEFNG---EGDTPLPVAAKFGHFNIANVLIKR 303
T L AA HA VK +LS + N +G+TPL +AAK GH I +L+ +
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 19/113 (16%)
Query: 132 ANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAM--HFYYGKCLVCS 189
++ GK L A G+ E+ I L+ N V+ E G T LH AAM H + L+ +
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRI-LMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKN 69
Query: 190 SENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNC 242
+ I A IG TP+H A Y +++ +LLK G++
Sbjct: 70 GADVNAIDA----------------IGETPLHLVAMYGHLEIVEVLLKHGADV 106
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 215 IGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLN 274
+G TP+H AA D +++ +LLK G++ T L L A H V+ +L
Sbjct: 46 VGLTPLHLAAMNDHLEIVEVLLKNGADV--NAIDAIGETPLHLVAMYGHLEIVEVLLKHG 103
Query: 275 PEFNGE---GDTPLPVAAKFGHFNIANVLIK 302
+ N + G T ++ G+ ++A +L K
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 106 LHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYE 165
L EA G V+IL D + + G T L+LAA + E+V LL+N V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI 76
Query: 166 GPNGKTALHAAAMHFY 181
G+T LH AM+ +
Sbjct: 77 DAIGETPLHLVAMYGH 92
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 104 TALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVS 163
T LH A + ++++V++L D + + G+T L+L A + E+V LL++ V+
Sbjct: 49 TPLHLAAMNDHLEIVEVLLKNGADV-NAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVN 107
Query: 164 YEGPNGKTAL 173
+ GKTA
Sbjct: 108 AQDKFGKTAF 117
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 106 LHEAVCHGNVQVVKILTGQDPDYPYSANNY-GKTQLYLAAKGRYSEMVIELLENSTSVSY 164
L EA G V+ILT D +AN+Y G T L+LAA + E+V LL+N V+
Sbjct: 18 LLEAARAGQDDEVRILTANGADV--NANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNA 75
Query: 165 EGPNGKTALHAAA 177
G G+T LH AA
Sbjct: 76 TGNTGRTPLHLAA 88
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
G TP+H AA +++ +LLK G++ + T L LAA H V+ +L
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADV--NATGNTGRTPLHLAAWADHLEIVEVLLKHGA 104
Query: 276 EFNGE---GDTPLPVAAKFGHFNIANVLIK 302
+ N + G T ++ G+ ++A +L K
Sbjct: 105 DVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 104 TALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVS 163
T LH A G++++V++L D + N G+T L+LAA + E+V LL++ V+
Sbjct: 49 TPLHLAAMLGHLEIVEVLLKNGADVNATGNT-GRTPLHLAAWADHLEIVEVLLKHGADVN 107
Query: 164 YEGPNGKTAL 173
+ GKTA
Sbjct: 108 AQDKFGKTAF 117
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLEN 158
DD T LH A G++++V++L D S +++G+T L+LAA + E+V LLE
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS-DSWGRTPLHLAATVGHLEIVEVLLEY 102
Query: 159 STSVSYEGPNGKTAL 173
V+ + GKTA
Sbjct: 103 GADVNAQDKFGKTAF 117
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
G TP+H AA +++ +LLK G++ T L LAA H V+ +L
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADV--NASDSWGRTPLHLAATVGHLEIVEVLLEYGA 104
Query: 276 EFNGE---GDTPLPVAAKFGHFNIANVLIK 302
+ N + G T ++ G+ ++A +L K
Sbjct: 105 DVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 106 LHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYE 165
L EA G V+IL D + ++ G T L+LAAK + E+V LL++ V+
Sbjct: 18 LLEATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 166 GPNGKTALHAAA 177
G+T LH AA
Sbjct: 77 DSWGRTPLHLAA 88
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
G++P+H+A + ++ ML+ RG+ R T L LAA H V+ +L
Sbjct: 34 GFSPLHWACREGRSAVVEMLIMRGARI--NVMNRGDDTPLHLAASHGHRDIVQKLLQYKA 91
Query: 276 EFNG---EGDTPLPVAAKFGHFNIANVLI 301
+ N G+ PL A +G +A L+
Sbjct: 92 DINAVNEHGNVPLHYACFWGQDQVAEDLV 120
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 52/136 (38%), Gaps = 17/136 (12%)
Query: 113 GNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTA 172
GN V++ + +++G + L+ A + S +V L+ ++ T
Sbjct: 11 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP 70
Query: 173 LHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLI 232
LH AA H + I LL K I G P+HYA ++ Q Q+
Sbjct: 71 LHLAASHGHRD------------IVQKLLQYKADI--NAVNEHGNVPLHYACFWGQDQVA 116
Query: 233 HMLLKRG---SNCFKY 245
L+ G S C KY
Sbjct: 117 EDLVANGALVSICNKY 132
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
G++P+H+A + ++ ML+ RG+ R T L LAA H V+ +L
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMRGARI--NVMNRGDDTPLHLAASHGHRDIVQKLLQYKA 96
Query: 276 EFNG---EGDTPLPVAAKFGHFNIANVLI 301
+ N G+ PL A +G +A L+
Sbjct: 97 DINAVNEHGNVPLHYACFWGQDQVAEDLV 125
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 52/136 (38%), Gaps = 17/136 (12%)
Query: 113 GNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTA 172
GN V++ + +++G + L+ A + S +V L+ ++ T
Sbjct: 16 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP 75
Query: 173 LHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLI 232
LH AA H + I LL K I G P+HYA ++ Q Q+
Sbjct: 76 LHLAASHGHRD------------IVQKLLQYKADI--NAVNEHGNVPLHYACFWGQDQVA 121
Query: 233 HMLLKRG---SNCFKY 245
L+ G S C KY
Sbjct: 122 EDLVANGALVSICNKY 137
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 11/128 (8%)
Query: 57 GSTKFMEEILEICPSVLHKSMPKAILRSTLLRNLAILIYCPADDENNTALHEAVCHGNVQ 116
GS +FM++I C A+ L N + DD + LH A G
Sbjct: 1 GSPEFMDDIFTQCRE------GNAVAVRLWLDNTENDLN-QGDDHGFSPLHWACREGRSA 53
Query: 117 VVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAA 176
VV++L + N T L+LAA + ++V +LL+ ++ +G LH A
Sbjct: 54 VVEMLIMRGARINV-MNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYA 112
Query: 177 AMHFYYGK 184
++G+
Sbjct: 113 C---FWGQ 117
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLEN 158
DD T LH A G++++V++L D S + +G+T L+LAA + E+V LLE
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS-DIWGRTPLHLAATVGHLEIVEVLLEY 102
Query: 159 STSVSYEGPNGKTAL 173
V+ + GKTA
Sbjct: 103 GADVNAQDKFGKTAF 117
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
G TP+H AA +++ +LLK G++ T L LAA H V+ +L
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADV--NASDIWGRTPLHLAATVGHLEIVEVLLEYGA 104
Query: 276 EFNGE---GDTPLPVAAKFGHFNIANVLIK 302
+ N + G T ++ G+ ++A +L K
Sbjct: 105 DVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 106 LHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYE 165
L EA G V+IL D + ++ G T L+LAAK + E+V LL++ V+
Sbjct: 18 LLEATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 166 GPNGKTALHAAA 177
G+T LH AA
Sbjct: 77 DIWGRTPLHLAA 88
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
G TP+H AA +++ +LLK G++ +T L LAA + H V+ +L
Sbjct: 47 GLTPLHLAAQLGHLEIVEVLLKYGADV--NAEDNFGITPLHLAAIRGHLEIVEVLLKHGA 104
Query: 276 EFNGE---GDTPLPVAAKFGHFNIANVLIK 302
+ N + G T ++ G+ ++A +L K
Sbjct: 105 DVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLEN 158
D++ T LH A G++++V++L D + +N+G T L+LAA + E+V LL++
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKYGADVN-AEDNFGITPLHLAAIRGHLEIVEVLLKH 102
Query: 159 STSVSYEGPNGKTAL 173
V+ + GKTA
Sbjct: 103 GADVNAQDKFGKTAF 117
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 106 LHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYE 165
L EA G V+IL D + + G T L+LAA+ + E+V LL+ V+ E
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-ALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAE 76
Query: 166 GPNGKTALHAAAM 178
G T LH AA+
Sbjct: 77 DNFGITPLHLAAI 89
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 12/67 (17%)
Query: 239 GSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPEFNG---EGDTPLPVAAKFGHFN 295
GS+ K + ++ AGQ V+ +++ + N +G TPL +AA+ GH
Sbjct: 11 GSDLGKKLLEAAR-------AGQDD--EVRILMANGADVNALDEDGLTPLHLAAQLGHLE 61
Query: 296 IANVLIK 302
I VL+K
Sbjct: 62 IVEVLLK 68
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLEN 158
DD T LH A G++++V++L D + + +G+T L+LAA + E+V LLE
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ARDIWGRTPLHLAATVGHLEIVEVLLEY 102
Query: 159 STSVSYEGPNGKTAL 173
V+ + GKTA
Sbjct: 103 GADVNAQDKFGKTAF 117
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNC-FKYCCQRSKMTALRLAAGQRHARTVKTILSLN 274
G TP+H AA +++ +LLK G++ + R T L LAA H V+ +L
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGR---TPLHLAATVGHLEIVEVLLEYG 103
Query: 275 PEFNGE---GDTPLPVAAKFGHFNIANVLIK 302
+ N + G T ++ G+ ++A +L K
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 106 LHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYE 165
L EA G V+IL D + ++ G T L+LAAK + E+V LL++ V+
Sbjct: 18 LLEATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAR 76
Query: 166 GPNGKTALHAAA 177
G+T LH AA
Sbjct: 77 DIWGRTPLHLAA 88
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 99 DDENNTALHEAVCHGNVQVVKILTGQ--DPDYPYSANNYGKTQLYLAAKGRYSEMVIELL 156
DD T H A GN++VVK L + PD N G T L+LA ++ E+ L+
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFEVSQFLI 127
Query: 157 ENSTSVSYEGPNGKTALHAAA 177
EN SV + + LH AA
Sbjct: 128 ENGASVRIKDKFNQIPLHRAA 148
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 99 DDENNTALHEAVCHGNVQVVKILTGQ--DPDYPYSANNYGKTQLYLAAKGRYSEMVIELL 156
DD T H A GN++VVK L + PD N G T L+LA ++ E+ L+
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFEVSQFLI 127
Query: 157 ENSTSVSYEGPNGKTALHAAA 177
EN SV + + LH AA
Sbjct: 128 ENGASVRIKDKFNQIPLHRAA 148
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 99 DDENNTALHEAVCHGNVQVVKILTGQ--DPDYPYSANNYGKTQLYLAAKGRYSEMVIELL 156
DD T H A GN++VVK L + PD N G T L+LA ++ E+ L+
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFEVSQFLI 127
Query: 157 ENSTSVSYEGPNGKTALHAAA 177
EN SV + + LH AA
Sbjct: 128 ENGASVRIKDKFNQIPLHRAA 148
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 27/171 (15%)
Query: 125 DPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGK 184
D + +T L+ A ++E+V LL+ V+ + G + LH AA
Sbjct: 29 DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA------- 81
Query: 185 CLVCSSENWVIIAASLLNNKVIILKPLFVVI----GWTPIHYAAYYDQYQLIHMLLKRGS 240
+ + ++ K +++K V G TP+HYAA +++++ MLL+ G+
Sbjct: 82 ---SAGRDEIV--------KALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
Query: 241 NCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPEFN---GEGDTPLPVA 288
N TA+ AA + + + V +L N EG+TPL +A
Sbjct: 131 N--PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 79/196 (40%), Gaps = 26/196 (13%)
Query: 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLEN 158
D ++ TALH A G+ ++V+ L Q ++ G + L++AA E+V LL
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLL-QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVK 95
Query: 159 STSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKV-IILKPLFVVIGW 217
V+ NG T LH AA S+N IA LL K +
Sbjct: 96 GAHVNAVNQNGCTPLHYAA------------SKNRHEIAVMLLEGGANPDAKDHYDA--- 140
Query: 218 TPIHYAAYYDQYQLIHMLL--KRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
T +H AA +++H+LL K +N T L LA + K +++
Sbjct: 141 TAMHRAAAKGNLKMVHILLFYKASTNIQ----DTEGNTPLHLACDEERVEEAKFLVTQGA 196
Query: 276 EF---NGEGDTPLPVA 288
N E TPL VA
Sbjct: 197 SIYIENKEEKTPLQVA 212
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 17/162 (10%)
Query: 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLEN 158
DD + LH A G ++VK L + + + N G T L+ AA E+ + LLE
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALLVKGA-HVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 159 STSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWT 218
+ P+ K A AMH K N ++ L ++ G T
Sbjct: 129 GAN-----PDAKDHYDATAMHRAAAKG------NLKMVHILLFYKASTNIQD---TEGNT 174
Query: 219 PIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAG 260
P+H A ++ + L+ +G++ Y + + T L++A G
Sbjct: 175 PLHLACDEERVEEAKFLVTQGASI--YIENKEEKTPLQVAKG 214
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 77/191 (40%), Gaps = 18/191 (9%)
Query: 115 VQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALH 174
QV+ L Q + + + G+T L+LAA+ ++ LL+ + + G+T LH
Sbjct: 30 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLH 89
Query: 175 AAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHM 234
AA G + LL N+ L + G TP+ AA ++
Sbjct: 90 AAVAADAMGVFQI------------LLRNRATNLNA-RMHDGTTPLILAARLAIEGMVED 136
Query: 235 LLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPEFNGEGD---TPLPVAAKF 291
L+ ++ S TAL AA + V +L + + + D TPL +AA+
Sbjct: 137 LITADADI--NAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAARE 194
Query: 292 GHFNIANVLIK 302
G + + L+
Sbjct: 195 GSYEASKALLD 205
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 79/196 (40%), Gaps = 26/196 (13%)
Query: 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLEN 158
D ++ TALH A G+ ++V+ L Q ++ G + L++AA E+V LL
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLL-QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK 96
Query: 159 STSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKV-IILKPLFVVIGW 217
V+ NG T LH AA S+N IA LL K +
Sbjct: 97 GAQVNAVNQNGCTPLHYAA------------SKNRHEIAVMLLEGGANPDAKDHYEA--- 141
Query: 218 TPIHYAAYYDQYQLIHMLL--KRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
T +H AA ++IH+LL K +N T L LA + K ++S
Sbjct: 142 TAMHRAAAKGNLKMIHILLYYKASTNIQ----DTEGNTPLHLACDEERVEEAKLLVSQGA 197
Query: 276 EF---NGEGDTPLPVA 288
N E TPL VA
Sbjct: 198 SIYIENKEEKTPLQVA 213
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
G TP+HYAA +++++ MLL+ G+N + TA+ AA + + + + +L
Sbjct: 107 GCTPLHYAASKNRHEIAVMLLEGGAN--PDAKDHYEATAMHRAAAKGNLKMIHILLYYKA 164
Query: 276 EFN---GEGDTPLPVAAKFGHFNIANVLIKR 303
N EG+TPL +A A +L+ +
Sbjct: 165 STNIQDTEGNTPLHLACDEERVEEAKLLVSQ 195
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 17/162 (10%)
Query: 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLEN 158
DD + LH A G ++VK L G+ + N G T L+ AA E+ + LLE
Sbjct: 71 DDAGWSPLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEG 129
Query: 159 STSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWT 218
+ P+ K A AMH K N +I L ++ G T
Sbjct: 130 GAN-----PDAKDHYEATAMHRAAAKG------NLKMIHILLYYKASTNIQD---TEGNT 175
Query: 219 PIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAG 260
P+H A ++ + +L+ +G++ Y + + T L++A G
Sbjct: 176 PLHLACDEERVEEAKLLVSQGASI--YIENKEEKTPLQVAKG 215
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 26/105 (24%)
Query: 142 LAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLL 201
LA G+ E+ +L + + + + +TALH A CS+ + I+
Sbjct: 14 LAYSGKLEELKESILADKSLATRTDQDSRTALHWA-----------CSAGHTEIVE---- 58
Query: 202 NNKVIILKPLFVVI------GWTPIHYAAYYDQYQLIHMLLKRGS 240
L L V + GW+P+H AA + +++ LL +G+
Sbjct: 59 -----FLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 98
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 27/171 (15%)
Query: 125 DPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGK 184
D + +T L+ A ++E+V LL+ V+ + G + LH AA
Sbjct: 29 DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA------- 81
Query: 185 CLVCSSENWVIIAASLLNNKVIILKPLFVVI----GWTPIHYAAYYDQYQLIHMLLKRGS 240
+ + ++ K +++K V G TP+HYAA +++++ MLL+ G+
Sbjct: 82 ---SAGXDEIV--------KALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
Query: 241 NCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPEFN---GEGDTPLPVA 288
N TA+ AA + + + V +L N EG+TPL +A
Sbjct: 131 N--PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 79/196 (40%), Gaps = 26/196 (13%)
Query: 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLEN 158
D ++ TALH A G+ ++V+ L Q ++ G + L++AA E+V LL
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLL-QLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK 95
Query: 159 STSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKV-IILKPLFVVIGW 217
V+ NG T LH AA S+N IA LL K +
Sbjct: 96 GAHVNAVNQNGCTPLHYAA------------SKNRHEIAVMLLEGGANPDAKDHYDA--- 140
Query: 218 TPIHYAAYYDQYQLIHMLL--KRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
T +H AA +++H+LL K +N T L LA + K +++
Sbjct: 141 TAMHRAAAKGNLKMVHILLFYKASTNIQ----DTEGNTPLHLACDEERVEEAKFLVTQGA 196
Query: 276 EF---NGEGDTPLPVA 288
N E TPL VA
Sbjct: 197 SIYIENKEEKTPLQVA 212
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 17/162 (10%)
Query: 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLEN 158
DD + LH A G ++VK L + + + N G T L+ AA E+ + LLE
Sbjct: 70 DDAGWSPLHIAASAGXDEIVKALLVKGA-HVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 159 STSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWT 218
+ P+ K A AMH K N ++ L ++ G T
Sbjct: 129 GAN-----PDAKDHYDATAMHRAAAKG------NLKMVHILLFYKASTNIQD---TEGNT 174
Query: 219 PIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAG 260
P+H A ++ + L+ +G++ Y + + T L++A G
Sbjct: 175 PLHLACDEERVEEAKFLVTQGASI--YIENKEEKTPLQVAKG 214
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 79/196 (40%), Gaps = 26/196 (13%)
Query: 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLEN 158
D ++ TALH A G+ ++V+ L Q ++ G + L++AA E+V LL
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLL-QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK 95
Query: 159 STSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKV-IILKPLFVVIGW 217
V+ NG T LH AA S+N IA LL K +
Sbjct: 96 GAQVNAVNQNGCTPLHYAA------------SKNRHEIAVMLLEGGANPDAKDHYEA--- 140
Query: 218 TPIHYAAYYDQYQLIHMLL--KRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
T +H AA ++IH+LL K +N T L LA + K ++S
Sbjct: 141 TAMHRAAAKGNLKMIHILLYYKASTNIQ----DTEGNTPLHLACDEERVEEAKLLVSQGA 196
Query: 276 EF---NGEGDTPLPVA 288
N E TPL VA
Sbjct: 197 SIYIENKEEKTPLQVA 212
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
G TP+HYAA +++++ MLL+ G+N + TA+ AA + + + + +L
Sbjct: 106 GCTPLHYAASKNRHEIAVMLLEGGAN--PDAKDHYEATAMHRAAAKGNLKMIHILLYYKA 163
Query: 276 EFN---GEGDTPLPVAAKFGHFNIANVLIKR 303
N EG+TPL +A A +L+ +
Sbjct: 164 STNIQDTEGNTPLHLACDEERVEEAKLLVSQ 194
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 17/162 (10%)
Query: 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLEN 158
DD + LH A G ++VK L G+ + N G T L+ AA E+ + LLE
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 159 STSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWT 218
+ P+ K A AMH K N +I L ++ G T
Sbjct: 129 GAN-----PDAKDHYEATAMHRAAAKG------NLKMIHILLYYKASTNIQD---TEGNT 174
Query: 219 PIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAG 260
P+H A ++ + +L+ +G++ Y + + T L++A G
Sbjct: 175 PLHLACDEERVEEAKLLVSQGASI--YIENKEEKTPLQVAKG 214
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 26/105 (24%)
Query: 142 LAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLL 201
LA G+ E+ +L + + + + +TALH A CS+ + I+
Sbjct: 13 LAYSGKLEELKESILADKSLATRTDQDSRTALHWA-----------CSAGHTEIVE---- 57
Query: 202 NNKVIILKPLFVVI------GWTPIHYAAYYDQYQLIHMLLKRGS 240
L L V + GW+P+H AA + +++ LL +G+
Sbjct: 58 -----FLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 97
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 106 LHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYE 165
L A G+VQ V+ L ++ +P + N +GKT L + G + + +ELL+ S + +
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG-STAIALELLKQGASPNVQ 70
Query: 166 GPNGKTALHAAA 177
+G + +H AA
Sbjct: 71 DTSGTSPVHDAA 82
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 106 LHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYE 165
L A G+VQ V+ L ++ +P + N +GKT L + G + + +ELL+ S + +
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG-STAIALELLKQGASPNVQ 64
Query: 166 GPNGKTALHAAA 177
+G + +H AA
Sbjct: 65 DTSGTSPVHDAA 76
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 14/92 (15%)
Query: 149 SEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIIL 208
+E V+ LLE ++Y +G TALH A C +N V + L+ N I
Sbjct: 53 TEEVLRLLERGADINYANVDGLTALHQA-----------CIDDN-VDMVKFLVENGANIN 100
Query: 209 KPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGS 240
+P GW P+H AA + L+ +G+
Sbjct: 101 QPDNE--GWIPLHAAASCGYLDIAEYLISQGA 130
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 136 GKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVC 188
G T L++AA Y+E++ L++ V+ + +G T LHAAA ++GK C
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAA---HWGKEEAC 248
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 17/143 (11%)
Query: 132 ANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSE 191
++ GK L A G+ E+ I L+ N V+ + G T L+ A H +
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRI-LMANGADVNAKDEYGLTPLYLATAHGH---------- 59
Query: 192 NWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSK 251
+ I LL N + IG+TP+H AA+ ++ +LLK G++ +
Sbjct: 60 --LEIVEVLLKNGADV--NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV--NAQDKFG 113
Query: 252 MTALRLAAGQRHARTVKTILSLN 274
TA ++ G + + + LN
Sbjct: 114 KTAFDISIGNGNEDLAEILQKLN 136
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 223 AAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPEFNGE-- 280
AA Q + +L+ G++ +T L LA H V+ +L + N
Sbjct: 21 AARAGQDDEVRILMANGADV--NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDA 78
Query: 281 -GDTPLPVAAKFGHFNIANVLIK 302
G TPL +AA GH IA VL+K
Sbjct: 79 IGFTPLHLAAFIGHLEIAEVLLK 101
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 106 LHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYE 165
L EA G V+IL D + + YG T LYLA + E+V LL+N V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-AKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76
Query: 166 GPNGKTALHAAAM 178
G T LH AA
Sbjct: 77 DAIGFTPLHLAAF 89
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 104 TALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVS 163
T L+ A HG++++V++L D + + G T L+LAA + E+ LL++ V+
Sbjct: 49 TPLYLATAHGHLEIVEVLLKNGADVN-AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN 107
Query: 164 YEGPNGKTAL 173
+ GKTA
Sbjct: 108 AQDKFGKTAF 117
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 106 LHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYE 165
L A G+VQ V+ L ++ +P + N +GKT L + G + + +ELL+ S + +
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPA-VALELLKQGASPNVQ 70
Query: 166 GPNGKTALHAAA 177
+G + +H AA
Sbjct: 71 DASGTSPVHDAA 82
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 106 LHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYE 165
L A G+VQ V+ L ++ +P + N +GKT L + G + + +ELL+ S + +
Sbjct: 14 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPA-VALELLKQGASPNVQ 72
Query: 166 GPNGKTALHAAA 177
+G + +H AA
Sbjct: 73 DASGTSPVHDAA 84
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 251 KMTALRLAAGQRHARTVKTILSLN----PEFNGEGDTPLPVAAKFGHFNIANVLIKR 303
++ AL AA QR + VK IL E + EG+TPL +A IA LI R
Sbjct: 5 EVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 90/225 (40%), Gaps = 40/225 (17%)
Query: 98 ADDENNTALHEAVCHGNVQVVKILT------GQDPDYPYSANNYGKTQLYLAAKGRYSEM 151
AD++ +T LH AV GN+ V L G++ D NN +T L+LA +
Sbjct: 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI---YNNLRQTPLHLAVITTLPSV 61
Query: 152 VIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVC------------SSENWVIIAA- 198
V L+ S +G+TA H A H CL + N+ + A
Sbjct: 62 VRLLVTAGASPMALDRHGQTAAHLACEH-RSPTCLRALLDSAAPGTLDLEARNYDGLTAL 120
Query: 199 ------------SLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYC 246
LL + + + + G +P+ +A + ++ +LL+ G+N
Sbjct: 121 HVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQ- 179
Query: 247 CQRSKMTALRLAAGQRHARTVKTILSLNPEF---NGEGDTPLPVA 288
S +AL A+G+ V+T++ + N DTPL VA
Sbjct: 180 -MYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA 223
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
GWTP+H A + ++ +LL+ G++ +++ T LAA + +K LS
Sbjct: 39 GWTPLHNAVQMSREDIVELLLRHGAD--PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGA 96
Query: 276 EFNG---EGDTPLPVAAKFGHFNIANVLIKR 303
+ N G T AA +G L KR
Sbjct: 97 DVNECDFYGFTAFMEAAVYGKVKALKFLYKR 127
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 104 TALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQL---YLAAKGRYSEMVIE-LLENS 159
TAL +A G+V+V+KIL + + +N G+ L L++ E + LL++
Sbjct: 150 TALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG 209
Query: 160 TSVSYEGPNGKTALHAAAMHFYYG 183
V+ G GKT L A + G
Sbjct: 210 ADVNVRGERGKTPLILAVEKKHLG 233
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 71/184 (38%), Gaps = 30/184 (16%)
Query: 101 ENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENST 160
E+N L +AV + +V +V+ L + + G T L+ A + ++V LL +
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63
Query: 161 SVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFV----VIG 216
NG T AA IA S+ K+ + K V G
Sbjct: 64 DPVLRKKNGATPFLLAA------------------IAGSVKLLKLFLSKGADVNECDFYG 105
Query: 217 WTPIHYAAYYDQYQLIHMLLKRGSNC--------FKYCCQRSKMTALRLAAGQRHARTVK 268
+T AA Y + + + L KRG+N + ++ TAL AA + H +K
Sbjct: 106 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK 165
Query: 269 TILS 272
+L
Sbjct: 166 ILLD 169
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 74/188 (39%), Gaps = 25/188 (13%)
Query: 136 GKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVI 195
G+T L+LAA+ S+ LLE S + + G+T LHAA G +
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 84
Query: 196 IAASLLNNKV-IILKPLFVV-------------------IGWTPIHYAAYYDQYQLIHML 235
+ A + + +IL V +G + +H+AA + +L
Sbjct: 85 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 144
Query: 236 LKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILS--LNPEFNGEGDT-PLPVAAKFG 292
LK G+N K + T L LAA + T K +L N + D P +A +
Sbjct: 145 LKNGAN--KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM 202
Query: 293 HFNIANVL 300
H +I +L
Sbjct: 203 HHDIVRLL 210
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 75/191 (39%), Gaps = 25/191 (13%)
Query: 133 NNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSEN 192
+ G+T L+LAA+ S+ LLE S + + G+T LHAA G +
Sbjct: 54 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 193 WVIIAASLLNNKV-IILKPLFVV-------------------IGWTPIHYAAYYDQYQLI 232
+ A + + +IL V +G + +H+AA +
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 173
Query: 233 HMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILS--LNPEFNGEGDT-PLPVAA 289
+LLK G+N K + T L LAA + T K +L N + D P +A
Sbjct: 174 VVLLKNGAN--KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQ 231
Query: 290 KFGHFNIANVL 300
+ H +I +L
Sbjct: 232 ERMHHDIVRLL 242
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 230 QLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPEFN---GEGDTPLP 286
++ LL RG+N R+ + AA T++T+L + N EG+ PL
Sbjct: 51 EIARRLLLRGAN--PDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLH 108
Query: 287 VAAKFGHFNIANVLIK 302
+AAK GH + L+K
Sbjct: 109 LAAKEGHLRVVEFLVK 124
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 74/188 (39%), Gaps = 25/188 (13%)
Query: 136 GKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVI 195
G+T L+LAA+ S+ LLE S + + G+T LHAA G +
Sbjct: 58 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 117
Query: 196 IAASLLNNKV-IILKPLFVV-------------------IGWTPIHYAAYYDQYQLIHML 235
+ A + + +IL V +G + +H+AA + +L
Sbjct: 118 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 177
Query: 236 LKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILS--LNPEFNGEGDT-PLPVAAKFG 292
LK G+N K + T L LAA + T K +L N + D P +A +
Sbjct: 178 LKNGAN--KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM 235
Query: 293 HFNIANVL 300
H +I +L
Sbjct: 236 HHDIVRLL 243
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
GWTP+H A + ++ +LL+ G++ +++ T LAA + +K LS
Sbjct: 59 GWTPLHNAVQMSREDIVELLLRHGAD--PVLRKKNGATPFILAAIAGSVKLLKLFLSKGA 116
Query: 276 EFNG---EGDTPLPVAAKFGHFNIANVLIKR 303
+ N G T AA +G L KR
Sbjct: 117 DVNECDFYGFTAFMEAAVYGKVKALKFLYKR 147
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 104 TALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQL---YLAAKGRYSEMVIE-LLENS 159
TAL +A G+V+V+KIL + + +N G+ L L++ E + LL++
Sbjct: 170 TALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG 229
Query: 160 TSVSYEGPNGKTALHAAAMHFYYG 183
V+ G GKT L A + G
Sbjct: 230 ADVNVRGERGKTPLILAVEKKHLG 253
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 71/184 (38%), Gaps = 30/184 (16%)
Query: 101 ENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENST 160
E+N L +AV + +V +V+ L + + G T L+ A + ++V LL +
Sbjct: 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 83
Query: 161 SVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFV----VIG 216
NG T AA IA S+ K+ + K V G
Sbjct: 84 DPVLRKKNGATPFILAA------------------IAGSVKLLKLFLSKGADVNECDFYG 125
Query: 217 WTPIHYAAYYDQYQLIHMLLKRGSNC--------FKYCCQRSKMTALRLAAGQRHARTVK 268
+T AA Y + + + L KRG+N + ++ TAL AA + H +K
Sbjct: 126 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK 185
Query: 269 TILS 272
+L
Sbjct: 186 ILLD 189
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 227 DQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPEFNGE---GDT 283
++ +L+ +L NC + K T L LAAG R V+ +L + + + G
Sbjct: 36 NEEKLMALLTPLNVNC--HASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLV 93
Query: 284 PLPVAAKFGHFNIANVLIK 302
PL A +GH+ + +L+K
Sbjct: 94 PLHNACSYGHYEVTELLLK 112
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLEN 158
+DE TALH AVC G+ ++VK L Q +A++ G T L+ AA ++ L+E+
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLV-QFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES 125
Query: 159 STSV 162
+V
Sbjct: 126 GAAV 129
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCF 243
GWTP+H AA + Q+ L++ G+ F
Sbjct: 103 GWTPLHCAASCNNVQVCKFLVESGAAVF 130
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLEN 158
+DE TALH AVC G+ ++VK L Q +A++ G T L+ AA ++ L+E+
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLV-QFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES 125
Query: 159 STSV 162
+V
Sbjct: 126 GAAV 129
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCF 243
GWTP+H AA + Q+ L++ G+ F
Sbjct: 103 GWTPLHCAASCNNVQVCKFLVESGAAVF 130
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 99 DDENNTALHEAVCHGNVQVVKIL--TGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELL 156
D+E T L A HG + VV+ L G DP ++ L LA Y+++V LL
Sbjct: 49 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR---ESALSLACSKGYTDIVKMLL 105
Query: 157 ENSTSVSYEGPNGKTALHAAAMHFYYGKCL 186
+ V+ NG T L A+H + KC+
Sbjct: 106 DCGVDVNEYDWNGGTPL-LYAVHGNHVKCV 134
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 99 DDENNTALHEAVCHGNVQVVKIL--TGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELL 156
D+E T L A HG + VV+ L G DP ++ L LA Y+++V LL
Sbjct: 31 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR---ESALSLACSKGYTDIVKMLL 87
Query: 157 ENSTSVSYEGPNGKTALHAAAMHFYYGKCL 186
+ V+ NG T L A+H + KC+
Sbjct: 88 DCGVDVNEYDWNGGTPL-LYAVHGNHVKCV 116
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 32.7 bits (73), Expect = 0.30, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 106 LHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYE 165
L EA G V+IL D N G T L+LAA+ + E+V LLE V+ +
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKN-GSTPLHLAARNGHLEVVKLLLEAGADVNAQ 68
Query: 166 GPNGKTAL 173
GKTA
Sbjct: 69 DKFGKTAF 76
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 94 IYCPADDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVI 153
I A TAL AV HG V VVK L + D ++ G T L A + + E+
Sbjct: 175 INAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDD-GSTALMCACEHGHKEIAG 233
Query: 154 ELLE-NSTSVSYEGPNGKTALHAA 176
LL S +S +G TAL A
Sbjct: 234 LLLAVPSCDISLTDRDGSTALMVA 257
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 23/148 (15%)
Query: 162 VSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIH 221
V+ NG TALH + H + + LL++ V + G++PI
Sbjct: 104 VNIADSNGNTALHYSVSHANFP------------VVQQLLDSGVCKVDKQNRA-GYSPIM 150
Query: 222 YAAY-----YDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPE 276
A D + + L + G+ K ++ TAL LA VK +L+ +
Sbjct: 151 LTALATLKTQDDIETVLQLFRLGNINAK--ASQAGQTALMLAVSHGRVDVVKALLACEAD 208
Query: 277 FN---GEGDTPLPVAAKFGHFNIANVLI 301
N +G T L A + GH IA +L+
Sbjct: 209 VNVQDDDGSTALMCACEHGHKEIAGLLL 236
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 52/133 (39%), Gaps = 8/133 (6%)
Query: 55 KTGSTKFMEEILEI-CPSVLHKSMPKAILRSTLLRNLAILIYCP--ADDENNTALHEAVC 111
K T ++E L + C S H + + L + + +L Y AD NTALH +V
Sbjct: 61 KVAYTTVLQEWLRLACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVS 120
Query: 112 HGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYS-----EMVIELLENSTSVSYEG 166
H N VV+ L N G + + L A E V++L +
Sbjct: 121 HANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKAS 180
Query: 167 PNGKTALHAAAMH 179
G+TAL A H
Sbjct: 181 QAGQTALMLAVSH 193
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 99 DDENNTALHEAVCHGNVQVVKIL--TGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELL 156
D+E T L A HG + VV+ L G DP ++ L LA Y+++V LL
Sbjct: 33 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR---ESALSLACSKGYTDIVKMLL 89
Query: 157 ENSTSVSYEGPNGKTALHAAAMHFYYGKCL 186
+ V+ NG T L A+H + KC+
Sbjct: 90 DCGVDVNEYDWNGGTPL-LYAVHGNHVKCV 118
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 92 ILIYCPADDENNTALHEAVCHGNVQVVKILTGQ 124
I+ P D ++N+AL AV GN Q+V I GQ
Sbjct: 131 IMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ 163
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 230 QLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPEFN---GEGDTPLP 286
++ LL RG+N R+ + AA T++T+L + N EG+ PL
Sbjct: 51 EIARRLLLRGAN--PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLH 108
Query: 287 VAAKFGHFNIANVLIK 302
+AAK GH + L+K
Sbjct: 109 LAAKEGHLRVVEFLVK 124
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 218 TPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPE- 276
T +H+AA ++ L+ + +G+ + + T L A Q H V ++ +
Sbjct: 44 TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNS-TPLHWATRQGHLSMVVQLMKYGADP 102
Query: 277 --FNGEGDTPLPVAAKFGHFNIANVLIKREKLAQHEDE 312
+GEG + + +AA+FGH +I LI + + D+
Sbjct: 103 SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQ 140
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 100 DENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENS 159
D N+T LH A G++ +V L D P + G + ++LAA+ ++ +V L+
Sbjct: 74 DLNSTPLHWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG 132
Query: 160 TSVSYEGPNGKTALHAAA 177
V NG T L AA
Sbjct: 133 QDVDMMDQNGMTPLMWAA 150
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 34/79 (43%)
Query: 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLEN 158
D EN T LH A + + +VK + + T L+ A + + MV++L++
Sbjct: 39 DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY 98
Query: 159 STSVSYEGPNGKTALHAAA 177
S G + +H AA
Sbjct: 99 GADPSLIDGEGCSCIHLAA 117
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 103 NTALHEAVCHGNVQVVKIL--TGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENST 160
NTALH AV GN V+ +L G + D + N G++ L LA + + M+ L E
Sbjct: 178 NTALHWAVLAGNTTVISLLLEAGANVD---AQNIKGESALDLAKQRKNVWMINHLQEARQ 234
Query: 161 SVSYE 165
+ Y+
Sbjct: 235 AKGYD 239
>pdb|2PFF|B Chain B, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|E Chain E, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|H Chain H, Structural Insights Of Yeast Fatty Acid Synthase
Length = 2006
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 92 ILIYCPADDENNTALHEAVCHGNVQVVKILTGQ 124
I+ P D ++N+AL AV GN Q+V I GQ
Sbjct: 131 IMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ 163
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 230 QLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPEFN---GEGDTPLP 286
++ LL RG+N R+ + AA T++T+L + N EG+ PL
Sbjct: 51 EIARRLLLRGAN--PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLH 108
Query: 287 VAAKFGHFNIANVLIK 302
+AAK GH + L+K
Sbjct: 109 LAAKEGHLRVVEFLVK 124
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLEN 158
D+ T L A G ++ V+ L D P+ ++ L LA+ G Y+++V LLE
Sbjct: 33 DERGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSLASTGGYTDIVGLLLER 91
Query: 159 STSVSYEGPNGKTALHAAAMHFYYGKCL 186
++ NG T L A+H + KC+
Sbjct: 92 DVDINIYDWNGGTPL-LYAVHGNHVKCV 118
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 106 LHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYE 165
L EA G V+IL D N G T L+LAA+ + E+V LLE V +
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKN-GSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86
Query: 166 GPNGKTAL 173
GKTA
Sbjct: 87 DKFGKTAF 94
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 126 PDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAA 177
P + ++ GK L A G+ E+ I L+ N V+ + NG T LH AA
Sbjct: 15 PRGSHMGSDLGKKLLEAARAGQDDEVRI-LMANGADVAAKDKNGSTPLHLAA 65
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%)
Query: 101 ENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENST 160
+ +T LH AV H + ++V++L D G+T L+LA + + + ++ LL+
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 161 SVSYEGPNGKTALHAAAM 178
+ G+T L +A +
Sbjct: 217 DPTARMYGGRTPLGSALL 234
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 100 DENNTALHEAVCHGNVQVVKILTGQDPDYPYS--ANNYGKTQLYLAAKGRYSEMVIELLE 157
++ +TALH AV H + + L G + Y N+ G+T L+LAA + V +L
Sbjct: 7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA 66
Query: 158 NSTSVSYEGPNGKTALHAA 176
V G TALH A
Sbjct: 67 AGAGVLVAERGGHTALHLA 85
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%)
Query: 101 ENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENST 160
+ +T LH AV H + ++V++L D G+T L+LA + + + ++ LL+
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 161 SVSYEGPNGKTALHAAAM 178
+ G+T L +A +
Sbjct: 217 DPTARMYGGRTPLGSALL 234
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 100 DENNTALHEAVCHGNVQVVKILTGQDPDYPYS--ANNYGKTQLYLAAKGRYSEMVIELLE 157
++ +TALH AV H + + L G + Y N+ G+T L+LAA + V +L
Sbjct: 7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA 66
Query: 158 NSTSVSYEGPNGKTALHAA 176
V G TALH A
Sbjct: 67 AGAGVLVAERGGHTALHLA 85
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
G T +H A+ + LL+ GS+ + T L A H + V+ +L
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSD--PNVKDHAGWTPLHEACNHGHLKVVELLLQHKA 67
Query: 276 EFNGEG---DTPLPVAAKFGHFNIANVLI 301
N G D+PL AAK GH +I +L+
Sbjct: 68 LVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 104 TALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVS 163
+ +HEA G+V+ V L + + ++ G T LYLA + + V +LLE+ V+
Sbjct: 103 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLESGADVN 161
Query: 164 YEGPNGKTALHAAA 177
+G + LHA A
Sbjct: 162 -QGKGQDSPLHAVA 174
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 20/157 (12%)
Query: 101 ENNTALHEAVCHGNVQVVKILTGQDPDYPYSANN-------------YGKTQLYLAAKGR 147
+ TALH A+ N +V +L D +AN +G+ L LAA
Sbjct: 100 KGQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN 159
Query: 148 YSEMVIELLENS---TSVSYEGPNGKTALHA---AAMHFYYGKCLVCSSENWVIIAASLL 201
+V LL+NS +S G T LHA A + V S N ++I + L
Sbjct: 160 QLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSXYNEILILGAKL 219
Query: 202 NNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKR 238
+ + L+ + G TP+ AA + ++ +L+R
Sbjct: 220 -HPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR 255
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 64/172 (37%), Gaps = 19/172 (11%)
Query: 136 GKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKC--LVCSSENW 193
G+T L++A + R +V L+EN V FY+G+ + + N
Sbjct: 101 GQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ 160
Query: 194 VIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYD-QYQLIHMLLKRGSNCFKYCCQRSKM 252
+ I LL N W P +A ++H L++ N +
Sbjct: 161 LAIVKFLLQN------------SWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSX 208
Query: 253 TALRLAAGQRHARTVKTILSLNPEFNGEGDTPLPVAAKFGHFNIANVLIKRE 304
L G + T+K L N +G TPL +AA G + +++RE
Sbjct: 209 YNEILILGAKLHPTLK----LEEITNRKGLTPLALAASSGKIGVLAYILQRE 256
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 12/86 (13%)
Query: 101 ENNTALHEAVCHGNVQVVKIL-----------TGQDPDY-PYSANNYGKTQLYLAAKGRY 148
E TALH AV + NV +V+ L TG Y P++ YG+ L AA
Sbjct: 74 EGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGS 133
Query: 149 SEMVIELLENSTSVSYEGPNGKTALH 174
E+V L+E+ + + G T LH
Sbjct: 134 EEIVRLLIEHGADIRAQDSLGNTVLH 159
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 73/188 (38%), Gaps = 25/188 (13%)
Query: 136 GKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVI 195
G+T L+LAA+ S+ LLE S + G+T LHAA G +
Sbjct: 22 GETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATD 81
Query: 196 IAASLLNNKV-IILKPLFVV-------------------IGWTPIHYAAYYDQYQLIHML 235
+ A + + +IL + +G + +H+AA + +L
Sbjct: 82 LDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 141
Query: 236 LKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILS--LNPEFNGEGDT-PLPVAAKFG 292
LK G+N K + T L LAA + T K +L N + D P +A +
Sbjct: 142 LKNGAN--KDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM 199
Query: 293 HFNIANVL 300
H +I +L
Sbjct: 200 HHDIVRLL 207
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 21/170 (12%)
Query: 134 NYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENW 193
+ GK L A G+ E+ I L+ N + + G + LH AA + ++ S
Sbjct: 1 DLGKKLLEAARAGQDDEVRI-LMANGAPFTTDWL-GTSPLHLAAQYGHF-------STTE 51
Query: 194 VIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMT 253
V++ A + + + TP+H AA ++ +LLK G++ KMT
Sbjct: 52 VLLRAG-------VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV--NAKDMLKMT 102
Query: 254 ALRLAAGQRHARTVKTILSLNPEFNGEG---DTPLPVAAKFGHFNIANVL 300
AL A H V+ ++ + + + T ++ G+ ++A +L
Sbjct: 103 ALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 21/145 (14%)
Query: 106 LHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAK-GRYSEMVIELLENSTSVSY 164
L EA G V+IL P++ + G + L+LAA+ G +S + LL S
Sbjct: 6 LLEAARAGQDDEVRILMANGA--PFTTDWLGTSPLHLAAQYGHFSTTEV-LLRAGVSRDA 62
Query: 165 EGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAA 224
+T LH AA SE I LL + + + + T +H+A
Sbjct: 63 RTKVDRTPLHMAA------------SEGHANIVEVLLKHGADVNAKDMLKM--TALHWAT 108
Query: 225 YYDQYQLIHMLLKRGSNCF---KYC 246
++ +++ +L+K G++ K+C
Sbjct: 109 EHNHQEVVELLIKYGADVHTQSKFC 133
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 32/88 (36%)
Query: 215 IGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLN 274
+G +P+H AA Y + +LL+ G + R ART
Sbjct: 33 LGTSPLHLAAQYGHFSTTEVLLRAGVS--------------------RDARTKVD----- 67
Query: 275 PEFNGEGDTPLPVAAKFGHFNIANVLIK 302
TPL +AA GH NI VL+K
Sbjct: 68 -------RTPLHMAASEGHANIVEVLLK 88
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAA 144
DD+ NTAL+ AV GN Q VK+ ++ + KT Y A
Sbjct: 92 DDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFYGKTGWKTSFYHAV 137
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 230 QLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPEFN---GEGDTPLP 286
++ LL RG+N R+ + AA T++T+L + N EG+ PL
Sbjct: 51 EIARRLLLRGAN--PDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLH 108
Query: 287 VAAKFGHFNIANVLIK 302
+AAK GH + L+K
Sbjct: 109 LAAKEGHLRVVEFLVK 124
>pdb|1J5S|A Chain A, Crystal Structure Of Uronate Isomerase (Tm0064) From
Thermotoga Maritima At 2.85 A Resolution
pdb|1J5S|B Chain B, Crystal Structure Of Uronate Isomerase (Tm0064) From
Thermotoga Maritima At 2.85 A Resolution
pdb|1J5S|C Chain C, Crystal Structure Of Uronate Isomerase (Tm0064) From
Thermotoga Maritima At 2.85 A Resolution
Length = 463
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 27/65 (41%)
Query: 86 LLRNLAILIYCPADDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAK 145
LLR++ + I C DD +T H V+ V IL PD + + G +
Sbjct: 151 LLRDMKVEILCTTDDPVSTLEHHRKAKEAVEGVTILPTWRPDRAMNVDKEGWREYVEKMG 210
Query: 146 GRYSE 150
RY E
Sbjct: 211 ERYGE 215
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 73/191 (38%), Gaps = 25/191 (13%)
Query: 133 NNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSEN 192
+ G T L+LAA S+ LLE S + + G+T LHAA G +
Sbjct: 54 DRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 193 WVIIAASLLNNKV-IILKPLFVV-------------------IGWTPIHYAAYYDQYQLI 232
+ A + + +IL V +G + +H+AA +
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 173
Query: 233 HMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILS--LNPEFNGEGDT-PLPVAA 289
+LLK G+N K + T L LAA + T K +L N + D P +A
Sbjct: 174 VVLLKNGAN--KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQ 231
Query: 290 KFGHFNIANVL 300
+ H +I +L
Sbjct: 232 ERMHHDIVRLL 242
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 104 TALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSV 162
TALH A N +VK L G+ + GKT + LAA+ E+V L++ SV
Sbjct: 281 TALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASV 339
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 230 QLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPEFN---GEGDTPLP 286
++ LL RG+N R+ + AA T++T+L + N EG+ PL
Sbjct: 51 EIARRLLLRGAN--PDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLH 108
Query: 287 VAAKFGHFNIANVLIK 302
+AAK GH + L+K
Sbjct: 109 LAAKEGHLRVVEFLVK 124
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 113 GNVQVVK--ILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGK 170
GN ++ + +L G +PD + G ++ AA+ + + + LLEN V+ E G
Sbjct: 48 GNPEIARRLLLRGANPDLK---DRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGN 104
Query: 171 TALHAAA 177
LH AA
Sbjct: 105 LPLHLAA 111
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLEN 158
D+ T L A G ++ V+ L D P+ ++ L LA+ G Y+++V LLE
Sbjct: 33 DERGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSLASTGGYTDIVGLLLER 91
Query: 159 STSVSYEGPNGKTAL 173
++ NG T L
Sbjct: 92 DVDINIYDWNGGTPL 106
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTIL--SL 273
G P+H A Y Y++ +L+K G+ K T L AA + K +L
Sbjct: 79 GLVPLHNACSYGHYEVAELLVKHGA--VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 136
Query: 274 NP-EFNGEGDTPLPVAAKFGHFNIANVL 300
+P + N +G+TPL + K G +I ++L
Sbjct: 137 DPTKKNRDGNTPLDL-VKDGDTDIQDLL 163
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 32/85 (37%)
Query: 218 TPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPEF 277
TP+H+AA Y++ ++ LL+ G++ HA+
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADV--------------------HAK------------ 75
Query: 278 NGEGDTPLPVAAKFGHFNIANVLIK 302
+ G PL A +GH+ +A +L+K
Sbjct: 76 DKGGLVPLHNACSYGHYEVAELLVK 100
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 57/144 (39%), Gaps = 20/144 (13%)
Query: 104 TALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTS-- 161
T LH AV ++ + L G D P + G T L+LA + V L ++ T+
Sbjct: 44 TPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 102
Query: 162 ----VSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGW 217
+ NG T LH A++H Y G + S + A N G
Sbjct: 103 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCN-------------GR 149
Query: 218 TPIHYAAYYDQYQLIHMLLKRGSN 241
T +H A L+ +LLK G++
Sbjct: 150 TALHLAVDLQNPDLVSLLLKCGAD 173
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 103 NTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLE---NS 159
+T LH A HG + +V++L D G+T L+LA + ++V LL+ +
Sbjct: 115 HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV 174
Query: 160 TSVSYEG 166
V+Y+G
Sbjct: 175 NRVTYQG 181
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTIL--SL 273
G P+H A Y Y++ +L+K G+ K T L AA + K +L
Sbjct: 75 GLVPLHNACSYGHYEVAELLVKHGA--VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 132
Query: 274 NP-EFNGEGDTPLPVAAKFGHFNIANVL 300
+P + N +G+TPL + K G +I ++L
Sbjct: 133 DPTKKNRDGNTPLDL-VKDGDTDIQDLL 159
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 32/85 (37%)
Query: 218 TPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPEF 277
TP+H+AA Y++ ++ LL+ G++ HA+
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADV--------------------HAK------------ 71
Query: 278 NGEGDTPLPVAAKFGHFNIANVLIK 302
+ G PL A +GH+ +A +L+K
Sbjct: 72 DKGGLVPLHNACSYGHYEVAELLVK 96
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275
G P+H A Y Y++ +L+K G+ K T L AA + K +L
Sbjct: 77 GLVPLHNACSYGHYEVAELLVKHGA--VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 134
Query: 276 E---FNGEGDTPLPVAAKFGHFNIANVL 300
+ N +G+TPL + K G +I ++L
Sbjct: 135 DPTKKNRDGNTPLDL-VKDGDTDIQDLL 161
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 32/85 (37%)
Query: 218 TPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPEF 277
TP+H+AA Y++ ++ LL+ G++ HA+
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADV--------------------HAK------------ 73
Query: 278 NGEGDTPLPVAAKFGHFNIANVLIK 302
+ G PL A +GH+ +A +L+K
Sbjct: 74 DKGGLVPLHNACSYGHYEVAELLVK 98
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 57/144 (39%), Gaps = 20/144 (13%)
Query: 104 TALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTS-- 161
T LH AV ++ + L G D P + G T L+LA + V L ++ T+
Sbjct: 47 TPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 105
Query: 162 ----VSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGW 217
+ NG T LH A++H Y G + S + A N G
Sbjct: 106 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCN-------------GR 152
Query: 218 TPIHYAAYYDQYQLIHMLLKRGSN 241
T +H A L+ +LLK G++
Sbjct: 153 TALHLAVDLQNPDLVSLLLKCGAD 176
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 103 NTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLE---NS 159
+T LH A HG + +V++L D G+T L+LA + ++V LL+ +
Sbjct: 118 HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV 177
Query: 160 TSVSYEG 166
V+Y+G
Sbjct: 178 NRVTYQG 184
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILS 272
G P+HYAA Q +++ LL +G++ + +T L A + H VK +LS
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKGADI--NAPDKHHITPLLSAVYEGHVSCVKLLLS 94
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILS 272
G P+HYAA Q +++ LL +G++ + +T L A + H VK +LS
Sbjct: 35 GRKPLHYAADCGQLEILEFLLLKGADI--NAPDKHHITPLLSAVYEGHVSCVKLLLS 89
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 99 DDENNTALHEAVCHGNVQVVKIL--TGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELL 156
++E TALH A+C N +V L G + + P +++G T L+ AA + + + L+
Sbjct: 51 NEEGITALHNAICGANYSIVDFLITAGANVNSP---DSHGWTPLHCAASCNDTVICMALV 107
Query: 157 ENSTSV 162
++ ++
Sbjct: 108 QHGAAI 113
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 104 TALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVS 163
+ +HEA G+V+ V L + + ++ G T LYLA + + V +LLE+ V+
Sbjct: 159 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLESGADVN 217
Query: 164 YEGPNGKTALHA 175
+G + LHA
Sbjct: 218 -QGKGQDSPLHA 228
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 28.1 bits (61), Expect = 7.2, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 280 EGDTPLPVAAKFGHFNIANVLIK 302
+G TPL +AA+ GH I VL+K
Sbjct: 34 DGYTPLHLAAREGHLEIVEVLLK 56
Score = 27.7 bits (60), Expect = 8.2, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 106 LHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYE 165
L EA G V+IL D + + G T L+LAA+ + E+V LL+ V+ +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 64
Query: 166 GPNGKTAL 173
GKTA
Sbjct: 65 DKFGKTAF 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,292,015
Number of Sequences: 62578
Number of extensions: 361979
Number of successful extensions: 1415
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 832
Number of HSP's gapped (non-prelim): 413
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)