Query 040452
Match_columns 316
No_of_seqs 184 out of 3247
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 13:40:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040452.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040452hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 3.7E-46 1.3E-50 328.4 24.8 288 4-315 45-378 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 1.6E-45 5.3E-50 324.4 25.1 299 3-315 11-345 (437)
3 1wdy_A 2-5A-dependent ribonucl 100.0 2.6E-44 8.8E-49 298.6 24.6 259 6-311 5-283 (285)
4 4g8k_A 2-5A-dependent ribonucl 100.0 2.7E-44 9.1E-49 306.0 24.4 283 6-311 25-331 (337)
5 2fo1_E LIN-12 protein; beta-ba 100.0 2.8E-42 9.7E-47 297.1 24.2 260 4-307 92-372 (373)
6 3utm_A Tankyrase-1; tankyrase, 100.0 2.2E-41 7.7E-46 289.2 25.3 278 5-316 23-315 (351)
7 3d9h_A CDNA FLJ77766, highly s 100.0 5E-42 1.7E-46 285.0 20.5 254 5-310 14-283 (285)
8 1yyh_A HN1;, notch 1, ankyrin 100.0 1.5E-40 5.1E-45 271.5 22.5 227 36-306 5-248 (253)
9 3ljn_A Hypothetical protein; a 100.0 5.6E-42 1.9E-46 294.7 10.3 261 5-313 19-321 (364)
10 3d9h_A CDNA FLJ77766, highly s 100.0 1.2E-39 4E-44 270.7 22.6 240 39-316 13-257 (285)
11 3aji_A 26S proteasome non-ATPa 100.0 1.4E-39 4.8E-44 262.1 19.6 224 40-307 5-231 (231)
12 2xai_A ASB-9, ankyrin repeat a 100.0 5.1E-40 1.7E-44 269.6 15.4 246 5-301 2-258 (261)
13 1k1a_A B-cell lymphoma 3-encod 100.0 2.4E-39 8.1E-44 262.4 18.7 229 36-305 4-240 (241)
14 3aji_A 26S proteasome non-ATPa 100.0 2.2E-39 7.5E-44 261.0 16.0 230 1-276 1-230 (231)
15 1wdy_A 2-5A-dependent ribonucl 100.0 1.5E-38 5E-43 263.9 21.4 233 40-316 4-255 (285)
16 3ljn_A Hypothetical protein; a 100.0 2E-39 7E-44 278.7 15.8 230 35-309 14-272 (364)
17 3b7b_A Euchromatic histone-lys 100.0 3.4E-38 1.1E-42 255.0 21.7 222 36-302 6-231 (237)
18 1yyh_A HN1;, notch 1, ankyrin 100.0 8.2E-39 2.8E-43 261.2 18.1 227 3-275 7-247 (253)
19 2fo1_E LIN-12 protein; beta-ba 100.0 3.1E-39 1E-43 278.2 16.2 233 38-315 91-347 (373)
20 1oy3_D Transcription factor in 100.0 4.4E-38 1.5E-42 260.8 21.2 204 98-315 5-259 (282)
21 3eu9_A Huntingtin-interacting 100.0 7.7E-38 2.6E-42 253.2 21.7 229 38-310 6-239 (240)
22 2dzn_A Probable 26S proteasome 100.0 5.9E-38 2E-42 252.1 18.9 217 41-303 2-227 (228)
23 3b7b_A Euchromatic histone-lys 100.0 8.5E-37 2.9E-41 246.8 24.5 203 98-316 7-212 (237)
24 4b93_B Ankyrin repeat domain-c 100.0 5.4E-39 1.8E-43 263.9 11.4 235 37-308 7-246 (269)
25 1oy3_D Transcription factor in 100.0 1.3E-37 4.4E-42 258.0 19.3 215 36-292 4-269 (282)
26 2xai_A ASB-9, ankyrin repeat a 100.0 5.8E-37 2E-41 251.4 22.8 197 101-315 2-200 (261)
27 3kea_A K1L; tropism, ANK repea 100.0 3.8E-39 1.3E-43 267.5 9.4 241 14-310 7-250 (285)
28 2f8y_A Notch homolog 1, transl 100.0 6.4E-37 2.2E-41 245.2 21.9 194 99-309 22-219 (223)
29 3utm_A Tankyrase-1; tankyrase, 100.0 8.6E-37 2.9E-41 260.8 23.2 254 3-307 55-335 (351)
30 2dzn_A Probable 26S proteasome 100.0 1.6E-36 5.4E-41 243.7 22.0 201 102-316 2-210 (228)
31 1k1a_A B-cell lymphoma 3-encod 100.0 3.3E-36 1.1E-40 243.9 23.0 204 97-315 4-217 (241)
32 2f8y_A Notch homolog 1, transl 100.0 1.6E-36 5.3E-41 243.0 20.8 215 17-277 2-217 (223)
33 3eu9_A Huntingtin-interacting 100.0 4.3E-37 1.5E-41 248.8 17.0 229 3-277 6-236 (240)
34 3kea_A K1L; tropism, ANK repea 100.0 1.6E-36 5.6E-41 251.7 18.8 208 83-313 12-227 (285)
35 4g8k_A 2-5A-dependent ribonucl 100.0 1.2E-35 4.1E-40 252.6 23.4 249 39-311 23-303 (337)
36 1ikn_D Protein (I-kappa-B-alph 100.0 6.7E-37 2.3E-41 247.3 13.3 204 98-315 4-220 (236)
37 4b93_B Ankyrin repeat domain-c 100.0 3.9E-36 1.3E-40 246.9 17.9 203 98-316 7-220 (269)
38 2rfa_A Transient receptor pote 100.0 2.8E-35 9.6E-40 237.1 20.9 195 101-312 2-228 (232)
39 1s70_B 130 kDa myosin-binding 100.0 6.8E-36 2.3E-40 249.9 16.5 229 40-312 39-295 (299)
40 3hra_A Ankyrin repeat family p 100.0 1.8E-34 6E-39 227.3 22.2 191 100-304 3-201 (201)
41 1s70_B 130 kDa myosin-binding 100.0 5.8E-35 2E-39 244.2 18.3 202 100-316 38-267 (299)
42 4gpm_A Engineered protein OR26 100.0 4.5E-34 1.6E-38 217.6 18.3 156 138-309 6-164 (169)
43 1sw6_A Regulatory protein SWI6 100.0 1.1E-34 3.6E-39 245.4 15.3 266 11-316 24-318 (327)
44 1ikn_D Protein (I-kappa-B-alph 100.0 2.9E-35 9.8E-40 237.7 10.5 215 37-292 4-230 (236)
45 2rfa_A Transient receptor pote 100.0 4E-34 1.4E-38 230.3 14.9 196 40-277 2-223 (232)
46 2etb_A Transient receptor pote 100.0 2.4E-34 8.1E-39 235.2 12.8 194 101-310 1-250 (256)
47 2pnn_A Transient receptor pote 100.0 2.9E-34 1E-38 236.9 13.4 202 97-314 8-267 (273)
48 2pnn_A Transient receptor pote 100.0 1.6E-33 5.6E-38 232.4 16.4 214 3-241 10-258 (273)
49 4gpm_A Engineered protein OR26 100.0 7.4E-33 2.5E-37 210.9 18.5 159 104-279 6-164 (169)
50 2etb_A Transient receptor pote 100.0 9.4E-34 3.2E-38 231.6 11.2 202 40-276 1-246 (256)
51 3hra_A Ankyrin repeat family p 100.0 1.4E-32 4.9E-37 216.3 16.8 192 40-274 4-201 (201)
52 3jxi_A Vanilloid receptor-rela 100.0 1.7E-32 5.9E-37 224.6 13.7 197 99-311 2-255 (260)
53 3jxi_A Vanilloid receptor-rela 100.0 2.6E-32 9E-37 223.5 14.6 213 4-241 3-250 (260)
54 1sw6_A Regulatory protein SWI6 100.0 1.4E-33 4.9E-38 238.5 1.6 242 5-292 51-327 (327)
55 4hbd_A KN motif and ankyrin re 100.0 2.5E-31 8.5E-36 219.4 14.0 188 102-305 76-274 (276)
56 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.6E-30 5.6E-35 197.4 16.6 159 101-276 4-162 (162)
57 3v30_A DNA-binding protein rfx 100.0 1.1E-30 3.9E-35 200.3 15.4 159 102-276 2-160 (172)
58 3v31_A Ankyrin repeat family A 100.0 2.8E-30 9.5E-35 197.2 17.0 158 136-309 3-163 (167)
59 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.4E-30 4.6E-35 197.9 14.9 155 135-306 4-162 (162)
60 2y1l_E Darpin-8.4; hydrolase-i 100.0 5.3E-30 1.8E-34 196.0 17.3 153 136-304 14-169 (169)
61 2rfm_A Putative ankyrin repeat 100.0 2E-30 7E-35 202.5 15.1 161 97-274 30-190 (192)
62 2rfm_A Putative ankyrin repeat 100.0 3.6E-30 1.2E-34 201.1 16.0 159 131-305 30-191 (192)
63 4hbd_A KN motif and ankyrin re 100.0 3.9E-30 1.3E-34 212.2 16.4 193 41-275 76-274 (276)
64 2y1l_E Darpin-8.4; hydrolase-i 100.0 1.2E-29 4.2E-34 193.9 17.6 159 99-274 11-169 (169)
65 3v30_A DNA-binding protein rfx 100.0 7.2E-30 2.5E-34 195.8 16.1 164 136-315 2-169 (172)
66 3v31_A Ankyrin repeat family A 100.0 1.2E-29 4.1E-34 193.6 16.5 159 101-276 2-160 (167)
67 1awc_B Protein (GA binding pro 100.0 4.2E-29 1.4E-33 187.8 16.7 151 102-270 2-152 (153)
68 3twr_A Tankyrase-2; ankyrin re 100.0 1.4E-29 4.8E-34 192.8 13.4 160 99-275 5-164 (165)
69 3f6q_A Integrin-linked protein 100.0 3.2E-29 1.1E-33 193.5 15.2 161 102-311 5-168 (179)
70 1bd8_A P19INK4D CDK4/6 inhibit 100.0 2E-28 6.9E-33 184.6 16.4 154 102-273 2-155 (156)
71 3twr_A Tankyrase-2; ankyrin re 100.0 5.7E-29 2E-33 189.5 13.3 158 132-306 4-165 (165)
72 3f6q_A Integrin-linked protein 100.0 9.4E-29 3.2E-33 190.8 14.7 143 81-241 15-163 (179)
73 1awc_B Protein (GA binding pro 100.0 2.5E-28 8.4E-33 183.6 16.4 148 136-300 2-152 (153)
74 1bd8_A P19INK4D CDK4/6 inhibit 100.0 6.6E-28 2.3E-32 181.8 15.3 150 136-303 2-155 (156)
75 2aja_A Ankyrin repeat family p 100.0 1.1E-31 3.7E-36 229.3 -6.9 242 9-312 68-350 (376)
76 2vge_A RELA-associated inhibit 100.0 6.4E-31 2.2E-35 210.7 -5.1 183 99-301 18-208 (229)
77 2aja_A Ankyrin repeat family p 100.0 1.8E-31 6.2E-36 227.9 -9.2 245 6-303 92-371 (376)
78 1ycs_B 53BP2, P53BP2; ankyrin 100.0 6.9E-29 2.4E-33 200.5 6.2 185 100-304 3-202 (239)
79 1ycs_B 53BP2, P53BP2; ankyrin 99.9 4.1E-28 1.4E-32 196.0 9.7 163 134-313 3-171 (239)
80 1d9s_A Cyclin-dependent kinase 99.9 3.2E-26 1.1E-30 168.4 11.4 131 159-306 2-136 (136)
81 1d9s_A Cyclin-dependent kinase 99.9 5.5E-26 1.9E-30 167.2 11.1 129 131-276 7-136 (136)
82 2vge_A RELA-associated inhibit 99.9 8.4E-28 2.9E-32 192.6 1.3 179 118-315 1-189 (229)
83 3t8k_A Uncharacterized protein 99.9 6.9E-26 2.4E-30 175.2 8.6 161 102-274 6-177 (186)
84 1bi7_B P16INK4A, MTS1, multipl 99.9 2.2E-25 7.4E-30 168.0 10.9 140 99-256 9-149 (156)
85 1bi7_B P16INK4A, MTS1, multipl 99.9 1.9E-25 6.6E-30 168.2 9.6 140 131-287 7-150 (156)
86 1n0r_A 4ANK, 4 ankyrin repeats 99.9 2.1E-24 7.1E-29 156.3 14.4 124 136-275 2-125 (126)
87 2jab_A H10-2-G3; HER2, darpin, 99.9 1.1E-24 3.8E-29 160.1 12.2 125 134-274 12-136 (136)
88 1n0r_A 4ANK, 4 ankyrin repeats 99.9 3.5E-24 1.2E-28 155.1 14.2 126 101-241 1-126 (126)
89 2jab_A H10-2-G3; HER2, darpin, 99.9 2.3E-24 7.8E-29 158.5 12.8 126 99-239 11-136 (136)
90 3t8k_A Uncharacterized protein 99.9 2.7E-25 9.1E-30 171.9 6.8 162 136-311 6-184 (186)
91 3ui2_A Signal recognition part 99.9 7.5E-24 2.6E-28 171.4 10.6 139 101-274 44-183 (244)
92 3deo_A Signal recognition part 99.9 1.1E-23 3.9E-28 162.8 11.1 109 101-225 43-152 (183)
93 3c5r_A BARD-1, BRCA1-associate 99.9 5.4E-24 1.8E-28 156.7 7.8 132 159-307 1-135 (137)
94 3c5r_A BARD-1, BRCA1-associate 99.9 8.2E-24 2.8E-28 155.7 7.3 128 131-274 5-132 (137)
95 3deo_A Signal recognition part 99.9 4.2E-23 1.4E-27 159.6 10.6 141 133-304 41-182 (183)
96 3ui2_A Signal recognition part 99.9 5.2E-23 1.8E-27 166.4 11.3 142 134-306 43-185 (244)
97 2b0o_E UPLC1; arfgap, structur 99.9 5.6E-23 1.9E-27 171.1 10.4 140 136-294 151-299 (301)
98 2b0o_E UPLC1; arfgap, structur 99.9 6.9E-23 2.4E-27 170.5 9.8 141 102-264 151-299 (301)
99 3aaa_C Myotrophin, protein V-1 99.9 1.5E-22 5.1E-27 146.0 9.4 108 101-223 6-113 (123)
100 3aaa_C Myotrophin, protein V-1 99.9 1.5E-22 5.2E-27 146.0 9.1 118 133-266 4-121 (123)
101 3ehr_A Osteoclast-stimulating 99.9 8.8E-23 3E-27 162.8 7.0 135 165-315 69-207 (222)
102 3ehr_A Osteoclast-stimulating 99.9 2.5E-22 8.6E-27 160.2 8.2 127 100-241 71-198 (222)
103 1dcq_A PYK2-associated protein 99.9 8.6E-21 2.9E-25 156.1 14.9 195 98-310 62-267 (278)
104 3jue_A Arfgap with coiled-coil 99.9 4.6E-21 1.6E-25 163.1 13.0 157 135-307 198-365 (368)
105 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.1E-20 3.8E-25 129.0 11.4 90 215-306 1-93 (93)
106 1dcq_A PYK2-associated protein 99.8 2.2E-20 7.4E-25 153.7 14.5 122 138-275 132-262 (278)
107 3lvq_E ARF-GAP with SH3 domain 99.8 1.7E-20 5.7E-25 167.1 12.8 136 136-290 132-276 (497)
108 1n0q_A 3ANK, 3 ankyrin repeats 99.8 3.8E-20 1.3E-24 126.3 10.6 81 102-183 2-82 (93)
109 3jue_A Arfgap with coiled-coil 99.8 5E-20 1.7E-24 156.7 12.3 146 101-261 198-347 (368)
110 3lvq_E ARF-GAP with SH3 domain 99.8 7.2E-20 2.5E-24 163.0 13.4 126 102-241 132-265 (497)
111 2l6b_A NR1C; ankyrin, consensu 99.8 3.7E-20 1.3E-24 131.7 8.4 103 211-315 4-109 (115)
112 2l6b_A NR1C; ankyrin, consensu 99.8 1.8E-19 6.2E-24 128.1 9.2 107 98-219 5-111 (115)
113 2zgd_A 3 repeat synthetic anky 99.7 3.1E-17 1.1E-21 115.4 9.8 90 98-200 20-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 6E-17 2.1E-21 113.9 8.5 91 131-235 19-109 (110)
115 1gp8_A Protein (scaffolding pr 44.4 20 0.00069 18.6 2.3 19 254-272 16-34 (40)
116 3mkq_B Coatomer subunit alpha; 23.8 2.2E+02 0.0074 20.9 6.9 19 219-237 121-139 (177)
117 3gvo_A Pumilio 2, pumilio homo 21.8 3.3E+02 0.011 22.2 8.9 24 213-236 214-237 (351)
118 3zrh_A Ubiquitin thioesterase 20.5 2.6E+02 0.0089 23.7 6.3 49 109-157 29-90 (454)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.7e-46 Score=328.38 Aligned_cols=288 Identities=26% Similarity=0.245 Sum_probs=213.3
Q ss_pred CCCCchHHHHHHcCCCCcccccccccccccccccccccCcchhhhhhhcccCcchHHHHHHHHhh-------chhhhhcc
Q 040452 4 VSTHPNLFKAAAEGHADEPFKKDTRSNEIRGLLTAQAKNRIRHINIISQKSKTGSTKFMEEILEI-------CPSVLHKS 76 (316)
Q Consensus 4 ~~~~~~l~~A~~~g~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~A~~~~~g~~~i~~~L~~~~~~-------~~~~~~~~ 76 (316)
..+.||||.||..|+.+ ++++|++ .+.+....+..|.||||+| +..|+.+++++|++.... ..++++.+
T Consensus 45 ~~~~t~L~~A~~~g~~~-~v~~Ll~-~g~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A 120 (437)
T 1n11_A 45 VKVETPLHMAARAGHTE-VAKYLLQ-NKAKVNAKAKDDQTPLHCA--ARIGHTNMVKLLLENNANPNLATTAGHTPLHIA 120 (437)
T ss_dssp SCCCCHHHHHHHHTCHH-HHHHHHH-HTCCSSCCCTTSCCHHHHH--HHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHH
T ss_pred CCCCCHHHHHHHcCCHH-HHHHHHh-CCCCCCCCCCCCCCHHHHH--HHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Confidence 34567888888888888 8888887 5555445555677888888 888888888888776321 11222222
Q ss_pred Chh-------------------------------hhhhHHHHHHhHhhhhCCC-----CCCCCcHHhHHHHcCCHHHHHH
Q 040452 77 MPK-------------------------------AILRSTLLRNLAILIYCPA-----DDENNTALHEAVCHGNVQVVKI 120 (316)
Q Consensus 77 ~~~-------------------------------~~~~~~~~~~~~~l~~~~~-----d~~~~t~l~~A~~~~~~~~~~~ 120 (316)
... ..++.++++ +|++.+. +..|.||||+|+..++.+++++
T Consensus 121 ~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~---~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 197 (437)
T 1n11_A 121 AREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAE---LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKL 197 (437)
T ss_dssp HHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH---HHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHH---HHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 220 044555555 5555433 3455666666666666666666
Q ss_pred HHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhhccccccccCcccHHHHHHHH
Q 040452 121 LTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASL 200 (316)
Q Consensus 121 Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~L 200 (316)
|++.+.++. ..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+ ++++|
T Consensus 198 Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~------------~v~~L 264 (437)
T 1n11_A 198 LLPRGGSPH-SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAE------------MVALL 264 (437)
T ss_dssp HGGGTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH------------HHHHH
T ss_pred HHhCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHH------------HHHHH
Confidence 666666543 44556677777777777777777777777777777777777777777777777 88888
Q ss_pred hcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCCC---C
Q 040452 201 LNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPE---F 277 (316)
Q Consensus 201 l~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~---~ 277 (316)
++.+. ..+..+..|.||||.|+..|+.+++++|+++|.+ . +..+..|.||||+|+..|+.+++++|++.|++ .
T Consensus 265 l~~~~--~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~ 340 (437)
T 1n11_A 265 LSKQA--NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-V-DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK 340 (437)
T ss_dssp HTTTC--CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-T-TCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCC
T ss_pred HhcCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc-C-CCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCC
Confidence 88887 6677788899999999999999999999998887 4 67788899999999999999999999999988 5
Q ss_pred CCCCCChHHHHHHcCCHHHHHHHHhccccccCcccccc
Q 040452 278 NGEGDTPLPVAAKFGHFNIANVLIKREKLAQHEDEELE 315 (316)
Q Consensus 278 ~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~ 315 (316)
+..|.||||+|+..|+.+++++|+++|++++..+.+|.
T Consensus 341 ~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~ 378 (437)
T 1n11_A 341 TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGT 378 (437)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSC
T ss_pred CCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCC
Confidence 57799999999999999999999999999999888775
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.6e-45 Score=324.41 Aligned_cols=299 Identities=23% Similarity=0.235 Sum_probs=211.1
Q ss_pred CCCCCchHHHHHHcCCCCcccccccccccccccccccccCcchhhhhhhcccCcchHHHHHHHHhh-------chhhhhc
Q 040452 3 PVSTHPNLFKAAAEGHADEPFKKDTRSNEIRGLLTAQAKNRIRHINIISQKSKTGSTKFMEEILEI-------CPSVLHK 75 (316)
Q Consensus 3 ~~~~~~~l~~A~~~g~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~A~~~~~g~~~i~~~L~~~~~~-------~~~~~~~ 75 (316)
..++.||||.||..|+++ +|++|++ .+.+....+..|.||||+| +..|+.+++++|++.... ..++++.
T Consensus 11 ~~~g~t~L~~Aa~~g~~~-~v~~Ll~-~g~~~~~~~~~~~t~L~~A--~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 86 (437)
T 1n11_A 11 GESGLTPLHVASFMGHLP-IVKNLLQ-RGASPNVSNVKVETPLHMA--ARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHC 86 (437)
T ss_dssp ----CCHHHHHHHHTCHH-HHHHHHH-TTCCSCCSSSCCCCHHHHH--HHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHH
T ss_pred CCCCCCHHHHHHHCCCHH-HHHHHHH-cCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHH
Confidence 346789999999999999 9999999 6777666677799999999 999999999999998432 2344555
Q ss_pred cChhhhhhHHHHHHhHhhhhCCC-----CCCCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHH
Q 040452 76 SMPKAILRSTLLRNLAILIYCPA-----DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSE 150 (316)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~~-----d~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~ 150 (316)
+.. .++.++++ +|++.+. +..|.||||+|+..|+.+++++|++.+.+.. ..+..|.||||+|+..|+.+
T Consensus 87 A~~--~g~~~~v~---~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~g~~~ 160 (437)
T 1n11_A 87 AAR--IGHTNMVK---LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA-CMTKKGFTPLHVAAKYGKVR 160 (437)
T ss_dssp HHH--HTCHHHHH---HHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHH
T ss_pred HHH--CCCHHHHH---HHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc-CCCCCCCCHHHHHHHcCCHH
Confidence 544 88999999 9998754 4568888888888888888888888877754 55667888888888888888
Q ss_pred HHHHHHhCCCCCccCCCCCCCHHHHHHHhhccccccc---------------------cCcccHHHHHHHHhcCcccccc
Q 040452 151 MVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLV---------------------CSSENWVIIAASLLNNKVIILK 209 (316)
Q Consensus 151 ~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~~---------------------~~~~~~~~~~~~Ll~~~~~~~~ 209 (316)
++++|+++|++++..+..|.||||+|+..++.+.... ....+...++++|++.+. ..
T Consensus 161 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~--~~ 238 (437)
T 1n11_A 161 VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG--SA 238 (437)
T ss_dssp HHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC--CT
T ss_pred HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC--CC
Confidence 8888888888887777778888888877777661100 000011124444444444 33
Q ss_pred ccccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCCC---CCCCCCChHH
Q 040452 210 PLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPE---FNGEGDTPLP 286 (316)
Q Consensus 210 ~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~---~~~~g~t~l~ 286 (316)
+..+..|.||||.|+..|+.+++++|++.+++ . +..+..|.||||+|+..|+.+++++|++.|++ .+..|.||||
T Consensus 239 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~ 316 (437)
T 1n11_A 239 NAESVQGVTPLHLAAQEGHAEMVALLLSKQAN-G-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLH 316 (437)
T ss_dssp TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-T-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHH
T ss_pred CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC-C-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHH
Confidence 44455566666666666666666666666555 3 45556666666666666666666666666665 3456777777
Q ss_pred HHHHcCCHHHHHHHHhccccccCcccccc
Q 040452 287 VAAKFGHFNIANVLIKREKLAQHEDEELE 315 (316)
Q Consensus 287 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~ 315 (316)
+|+..|+.+++++|+++|++++..+..|.
T Consensus 317 ~A~~~g~~~~v~~Ll~~gad~n~~~~~g~ 345 (437)
T 1n11_A 317 VASHYGNIKLVKFLLQHQADVNAKTKLGY 345 (437)
T ss_dssp HHHHSSCSHHHHHHHHTTCCTTCCCTTSC
T ss_pred HHHHcCcHHHHHHHHhcCCCCCCCCCCCC
Confidence 77777777777777777777777766554
No 3
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.6e-44 Score=298.64 Aligned_cols=259 Identities=20% Similarity=0.171 Sum_probs=233.0
Q ss_pred CCchHHHHHHcCCCCccccccccccccccccc-ccccCcchhhhhhhcccCcchHHHHHHHHhhchhhhhccChhhhhhH
Q 040452 6 THPNLFKAAAEGHADEPFKKDTRSNEIRGLLT-AQAKNRIRHINIISQKSKTGSTKFMEEILEICPSVLHKSMPKAILRS 84 (316)
Q Consensus 6 ~~~~l~~A~~~g~~~~~~~~ll~~~~~~~~~~-~~~~~t~L~~A~~~~~g~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~ 84 (316)
+.++|+.|++.|+++ ++++|++ .+.+.... +..|.||||+| +..|+.+++++|++.....
T Consensus 5 g~~~L~~A~~~g~~~-~v~~Ll~-~g~~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~~g~~~--------------- 65 (285)
T 1wdy_A 5 DNHLLIKAVQNEDVD-LVQQLLE-GGANVNFQEEEGGWTPLHNA--VQMSREDIVELLLRHGADP--------------- 65 (285)
T ss_dssp HHHHHHHHHHTTCHH-HHHHHHH-TTCCTTCCCTTTCCCHHHHH--HHTTCHHHHHHHHHTTCCT---------------
T ss_pred cchHHHHHHHcCCHH-HHHHHHH-cCCCcccccCCCCCcHHHHH--HHcCCHHHHHHHHHcCCCC---------------
Confidence 468999999999999 9999999 66554333 55699999999 9999999999999862110
Q ss_pred HHHHHhHhhhhCCCCCCCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCcc
Q 040452 85 TLLRNLAILIYCPADDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSY 164 (316)
Q Consensus 85 ~~~~~~~~l~~~~~d~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~ 164 (316)
...+..|.||||+|+..|+.+++++|++.|.++. ..+..|.||||+|+..|+.+++++|++.|++++.
T Consensus 66 -----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~ 133 (285)
T 1wdy_A 66 -----------VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNL 133 (285)
T ss_dssp -----------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred -----------cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCcccCCHHHHHHHhCCHHHHHHHHHhCCCccc
Confidence 1235789999999999999999999999999865 6788899999999999999999999999999987
Q ss_pred C----------CCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcC-ccccccccccccCCcHHHHHHhcCC----H
Q 040452 165 E----------GPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNN-KVIILKPLFVVIGWTPIHYAAYYDQ----Y 229 (316)
Q Consensus 165 ~----------~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~t~l~~A~~~~~----~ 229 (316)
. +..|.||||+|+..++.+ ++++|++. +. ..+..+..|.||||.|+..++ .
T Consensus 134 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~------------~v~~Ll~~~~~--~~~~~~~~g~t~l~~a~~~~~~~~~~ 199 (285)
T 1wdy_A 134 RRKTKEDQERLRKGGATALMDAAEKGHVE------------VLKILLDEMGA--DVNACDNMGRNALIHALLSSDDSDVE 199 (285)
T ss_dssp CCCCCHHHHHTTCCCCCHHHHHHHHTCHH------------HHHHHHHTSCC--CTTCCCTTSCCHHHHHHHCSCTTTHH
T ss_pred ccccHHHHHhhccCCCcHHHHHHHcCCHH------------HHHHHHHhcCC--CCCccCCCCCCHHHHHHHccccchHH
Confidence 7 778999999999999999 99999987 66 678889999999999999999 9
Q ss_pred HHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHh-cCCC---CCCCCCChHHHHHHcCCHHHHHHHHhccc
Q 040452 230 QLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILS-LNPE---FNGEGDTPLPVAAKFGHFNIANVLIKREK 305 (316)
Q Consensus 230 ~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~-~~~~---~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~ 305 (316)
+++++|++.|++ . +..+..|.||||+|+..|+.+++++|++ .|++ .+..|.|||++|+..|+.+++++|+++|+
T Consensus 200 ~i~~~Ll~~g~~-~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga 277 (285)
T 1wdy_A 200 AITHLLLDHGAD-V-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA 277 (285)
T ss_dssp HHHHHHHHTTCC-S-SCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSS
T ss_pred HHHHHHHHcCCC-C-CCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCC
Confidence 999999999998 4 7788999999999999999999999999 7777 56889999999999999999999999999
Q ss_pred cccCcc
Q 040452 306 LAQHED 311 (316)
Q Consensus 306 ~~~~~~ 311 (316)
+++..|
T Consensus 278 ~~~~~d 283 (285)
T 1wdy_A 278 STDCGD 283 (285)
T ss_dssp CSCCSS
T ss_pred CCCccc
Confidence 999876
No 4
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=2.7e-44 Score=305.98 Aligned_cols=283 Identities=17% Similarity=0.086 Sum_probs=232.9
Q ss_pred CCchHHHHHHcCCCCcccccccccccccccccc-cccCcchhhhhhhcccCcchHHHHHHHHhhch-------hhhhccC
Q 040452 6 THPNLFKAAAEGHADEPFKKDTRSNEIRGLLTA-QAKNRIRHINIISQKSKTGSTKFMEEILEICP-------SVLHKSM 77 (316)
Q Consensus 6 ~~~~l~~A~~~g~~~~~~~~ll~~~~~~~~~~~-~~~~t~L~~A~~~~~g~~~i~~~L~~~~~~~~-------~~~~~~~ 77 (316)
.+++|+.||+.|+++ +|++|++ .|.+....+ ..|.||||+| +..|+.+++++|+++..... ..+....
T Consensus 25 ~~t~L~~Av~~g~~~-~V~~LL~-~Gadvn~~~~~~g~TpLh~A--~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~ 100 (337)
T 4g8k_A 25 DNHLLIKAVQNEDVD-LVQQLLE-GGANVNFQEEEGGWTPLHNA--VQMSREDIVELLLRHGADPVLRKKNGATPFILAA 100 (337)
T ss_dssp HHHHHHHHHHTTCHH-HHHHHHH-HTCCTTCCCTTTCCCHHHHH--HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred CChHHHHHHHcCCHH-HHHHHHH-CCCCCCccCCCCCcCHHHHH--HHcCCHHHHHHHHHcCCchhhhccCCCchhHHHH
Confidence 357899999999999 9999999 777754443 3599999999 99999999999999743211 1111111
Q ss_pred hhhhhhHHHHHHhHhhhhCC-----CCCCCCcHHhHHHHcCCHHHHHHHHhCCCCCCC---------CCCCCCCchhHHH
Q 040452 78 PKAILRSTLLRNLAILIYCP-----ADDENNTALHEAVCHGNVQVVKILTGQDPDYPY---------SANNYGKTQLYLA 143 (316)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~-----~d~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~---------~~~~~~~~~l~~a 143 (316)
. .+...++. .+.+.. .|..|.||+++|+..++.+++++|++.|.+++. ..+..|.||||+|
T Consensus 101 ~--~~~~~~~~---~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A 175 (337)
T 4g8k_A 101 I--AGSVKLLK---LFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA 175 (337)
T ss_dssp H--HTCHHHHH---HHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHH
T ss_pred h--cccchhhH---HhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHH
Confidence 1 55566666 666653 367899999999999999999999999887642 2345689999999
Q ss_pred HhcCCHHHHHHHHh-CCCCCccCCCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCccccccccccccCCcHHHH
Q 040452 144 AKGRYSEMVIELLE-NSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHY 222 (316)
Q Consensus 144 ~~~~~~~~v~~Ll~-~g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~ 222 (316)
+..|+.+++++|++ .|++++.++..|.|+++.++..+... ....++++|++.+. ..+..+..|.||||+
T Consensus 176 ~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~--------~~~~i~~lLl~~ga--d~n~~d~~g~t~L~~ 245 (337)
T 4g8k_A 176 AEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS--------DVEAITHLLLDHGA--DVNVRGERGKTPLIL 245 (337)
T ss_dssp HHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTT--------THHHHHHHHHHTTC--CTTCCCGGGCCHHHH
T ss_pred HHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcc--------cHHHHHHHHHHCCC--CCCCcCCCCCCHHHH
Confidence 99999999999995 69999999999999999987765432 22238899999998 778889999999999
Q ss_pred HHhcCCHHHHHHHHhc-CCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCCCCCCCCCChHHHHHHcCCHHHHHHHH
Q 040452 223 AAYYDQYQLIHMLLKR-GSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPEFNGEGDTPLPVAAKFGHFNIANVLI 301 (316)
Q Consensus 223 A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll 301 (316)
|+..|+.+++++|++. +.+ .+..+..|+||||+|++.|+.++|++|+++|++.+ ..+||++|+..|+.++|++|+
T Consensus 246 a~~~~~~~~v~~Ll~~~~~~--vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n--~~~~L~~A~~~~~~~iv~~Ll 321 (337)
T 4g8k_A 246 AVEKKHLGLVQRLLEQEHIE--INDTDSDGKTALLLAVELKLKKIAELLCKRGASTD--CGDLVMTARRNYDHSLVKVLL 321 (337)
T ss_dssp HHHTTCHHHHHHHHTSTTCC--TTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSST--TCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHhcCCc--ccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCHHHHHHHcCCHHHHHHHH
Confidence 9999999999999986 455 47889999999999999999999999999999765 568999999999999999999
Q ss_pred hccccccCcc
Q 040452 302 KREKLAQHED 311 (316)
Q Consensus 302 ~~g~~~~~~~ 311 (316)
++||+++...
T Consensus 322 ~~GA~~d~~~ 331 (337)
T 4g8k_A 322 SHGAKEDFHP 331 (337)
T ss_dssp HTTCCC----
T ss_pred HCcCCCCCCC
Confidence 9999998753
No 5
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2.8e-42 Score=297.14 Aligned_cols=260 Identities=20% Similarity=0.170 Sum_probs=223.6
Q ss_pred CCCCchHHHHHHcCCCCcccccccccccccccccccccCcchhhhhhhcccCcchHHHHHHHHhhchhhhhccChhhhhh
Q 040452 4 VSTHPNLFKAAAEGHADEPFKKDTRSNEIRGLLTAQAKNRIRHINIISQKSKTGSTKFMEEILEICPSVLHKSMPKAILR 83 (316)
Q Consensus 4 ~~~~~~l~~A~~~g~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~A~~~~~g~~~i~~~L~~~~~~~~~~~~~~~~~~~~~ 83 (316)
..+.++||.||. |+.+ ++++|++ .+++ ..++..|.||||+| +..|+.+++++|+...
T Consensus 92 ~~g~t~L~~Aa~-~~~~-~~~~L~~-~~~n-~~d~~~g~t~Lh~A--a~~g~~~~v~~Ll~~~----------------- 148 (373)
T 2fo1_E 92 PESPIKLHTEAA-GSYA-ITEPITR-ESVN-IIDPRHNRTVLHWI--ASNSSAEKSEDLIVHE----------------- 148 (373)
T ss_dssp --CCCHHHHHHH-SSSC-CCSCCST-TTTT-TCCCSSCCCHHHHH--HCTTCCSCCTTHHHHH-----------------
T ss_pred CCCccHHHHHhc-CCch-HHHHhcc-cccc-ccCCcCCCCHHHHH--HHCCCHHHHHHHHHHH-----------------
Confidence 456899999999 4568 9999987 6777 23335799999999 9999999999999741
Q ss_pred HHHHHHhHhhhhCC-----CCCCCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhC
Q 040452 84 STLLRNLAILIYCP-----ADDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLEN 158 (316)
Q Consensus 84 ~~~~~~~~~l~~~~-----~d~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~ 158 (316)
++ .|++.+ .|..|.||||+|+..|+.+++++|++.|+++. ..+..|.||||+|+..|+.+++++|++.
T Consensus 149 ---~~---~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 221 (373)
T 2fo1_E 149 ---AK---ECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPT-IYNKSERSALHQAAANRDFGMMVYMLNS 221 (373)
T ss_dssp ---HH---HHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHTTS
T ss_pred ---HH---HHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCc-ccCCCCCCHHHHHHHCCCHHHHHHHHhc
Confidence 12 444432 36789999999999999999999999999965 7788999999999999999999999999
Q ss_pred C---CCCccCCCCCCCHHHHHHHhh---ccccccccCcccHHHHHHHHhcCcccccc------ccccccCCcHHHHHHhc
Q 040452 159 S---TSVSYEGPNGKTALHAAAMHF---YYGKCLVCSSENWVIIAASLLNNKVIILK------PLFVVIGWTPIHYAAYY 226 (316)
Q Consensus 159 g---~~~~~~~~~~~t~L~~a~~~~---~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~------~~~~~~~~t~l~~A~~~ 226 (316)
+ ++++..+..|.||||+|+..+ +.+ ++++|++.+.+... ...+..|.||||+|+..
T Consensus 222 ~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~------------~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~ 289 (373)
T 2fo1_E 222 TKLKGDIEELDRNGMTALMIVAHNEGRDQVA------------SAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQV 289 (373)
T ss_dssp HHHHHTTSCCCTTSCCHHHHHHHSCSTTHHH------------HHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSS
T ss_pred CccccChhhcCCCCCCHHHHHHHhCCcchHH------------HHHHHHHCCCCcccccccccCcccccCCCHHHHHHHh
Confidence 8 799999999999999999987 677 99999999882221 12567899999999999
Q ss_pred CCHHHHHHHHhcC-CCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCCC---CCCCCCChHHHHHHcCCHHHHHHHHh
Q 040452 227 DQYQLIHMLLKRG-SNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPE---FNGEGDTPLPVAAKFGHFNIANVLIK 302 (316)
Q Consensus 227 ~~~~~~~~Ll~~~-~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~---~~~~g~t~l~~A~~~~~~~~~~~Ll~ 302 (316)
|+.+++++|++.+ .+ .+..+..|.||||+|+..|+.+++++|++.|++ .+..|.|||++|+..|+.+++++|++
T Consensus 290 g~~~~v~~Ll~~~~~~--~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~ 367 (373)
T 2fo1_E 290 SNMPIVKYLVGEKGSN--KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 367 (373)
T ss_dssp CCHHHHHHHHHHSCCC--TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred CCHHHHHHHHHhcCCC--ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 9999999999887 55 478899999999999999999999999999998 56889999999999999999999999
Q ss_pred ccccc
Q 040452 303 REKLA 307 (316)
Q Consensus 303 ~g~~~ 307 (316)
++++.
T Consensus 368 ~~a~~ 372 (373)
T 2fo1_E 368 CRPER 372 (373)
T ss_dssp TC---
T ss_pred cCccc
Confidence 99864
No 6
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=2.2e-41 Score=289.23 Aligned_cols=278 Identities=17% Similarity=0.151 Sum_probs=231.9
Q ss_pred CCCchHHHHHHcCCCCcccccccccccccccccccccCcchhhhhhhcccCcchHHHHHHHHhhchhhhhccChhhhhhH
Q 040452 5 STHPNLFKAAAEGHADEPFKKDTRSNEIRGLLTAQAKNRIRHINIISQKSKTGSTKFMEEILEICPSVLHKSMPKAILRS 84 (316)
Q Consensus 5 ~~~~~l~~A~~~g~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~A~~~~~g~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~ 84 (316)
...++|+.||..|+.+ .+++|+...+.+....+..|.||||+| +..|+.+++++|++.....
T Consensus 23 ~~~~~L~~A~~~g~~~-~v~~ll~~~~~~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~g~~~--------------- 84 (351)
T 3utm_A 23 YKKDELLEAARSGNEE-KLMALLTPLNVNCHASDGRKSTPLHLA--AGYNRVRIVQLLLQHGADV--------------- 84 (351)
T ss_dssp HHHHHHHHHHHHTCHH-HHHHHCCTTTTTCCCSSTTCCCHHHHH--HHTTCHHHHHHHHHTTCCT---------------
T ss_pred ccchhHHHHHHcCCHH-HHHHHHHhcCCCcccCCCCCCCHHHHH--HHcCCHHHHHHHHHcCCCC---------------
Confidence 3468999999999999 999999866776556677799999999 9999999999999862110
Q ss_pred HHHHHhHhhhhCCCCCCCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCcc
Q 040452 85 TLLRNLAILIYCPADDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSY 164 (316)
Q Consensus 85 ~~~~~~~~l~~~~~d~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~ 164 (316)
...+..|.||||+|+..|+.+++++|++.+.+++ ..+..|.||||+|+..|+.+++++|+++|++++.
T Consensus 85 -----------~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 152 (351)
T 3utm_A 85 -----------HAKDKGGLVPLHNACSYGHYEVTELLLKHGACVN-AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTL 152 (351)
T ss_dssp -----------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred -----------CccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc
Confidence 1246789999999999999999999999999975 6788899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHhhcccccc---------ccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhc---CCHHHH
Q 040452 165 EGPNGKTALHAAAMHFYYGKCL---------VCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYY---DQYQLI 232 (316)
Q Consensus 165 ~~~~~~t~L~~a~~~~~~~~~~---------~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~---~~~~~~ 232 (316)
.+..|.+|+++++..+..+... ..........+..++.... .....+..|.||||.|+.. +..+++
T Consensus 153 ~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~t~L~~A~~~~~~~~~~~~ 230 (351)
T 3utm_A 153 VNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEI--INFKQPQSHETALHCAVASLHPKRKQVA 230 (351)
T ss_dssp CCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCC--TTCCCTTTCCCHHHHHHHCCSTTHHHHH
T ss_pred ccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhc--ccccCCCCCCCHHHHHHHHhCccHHHHH
Confidence 9999999998875443332100 0001111115555555544 3445667899999999999 668999
Q ss_pred HHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCCC---CCCCCCChHHHHHHcCCHHHHHHHHhccccccC
Q 040452 233 HMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPE---FNGEGDTPLPVAAKFGHFNIANVLIKREKLAQH 309 (316)
Q Consensus 233 ~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~---~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~ 309 (316)
++|++.|++ . +..+..|.||||+|+..|+.+++++|++.|++ .+..|.||||+|+..|+.+++++|+++|++++.
T Consensus 231 ~~Ll~~g~~-~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~ 308 (351)
T 3utm_A 231 ELLLRKGAN-V-NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSI 308 (351)
T ss_dssp HHHHHTTCC-T-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHcCCC-c-CCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCC
Confidence 999999998 5 77889999999999999999999999999998 567899999999999999999999999999999
Q ss_pred ccccccC
Q 040452 310 EDEELES 316 (316)
Q Consensus 310 ~~~~~~~ 316 (316)
.+.+|.+
T Consensus 309 ~~~~g~t 315 (351)
T 3utm_A 309 ISLQGFT 315 (351)
T ss_dssp CCTTSCC
T ss_pred cCCCCCC
Confidence 9988763
No 7
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=5e-42 Score=284.97 Aligned_cols=254 Identities=17% Similarity=0.125 Sum_probs=198.7
Q ss_pred CCCchHHHHHHcCCCCcccccccc------------cccccccccccccCcchhhhhhhcccCcchHHHHHHHHhhchhh
Q 040452 5 STHPNLFKAAAEGHADEPFKKDTR------------SNEIRGLLTAQAKNRIRHINIISQKSKTGSTKFMEEILEICPSV 72 (316)
Q Consensus 5 ~~~~~l~~A~~~g~~~~~~~~ll~------------~~~~~~~~~~~~~~t~L~~A~~~~~g~~~i~~~L~~~~~~~~~~ 72 (316)
.+.++||+||..|+.+ .+..++. ...+. ..+..|.||||+| +..|+.+++++|++.....
T Consensus 14 ~~~~~lH~Aa~~g~~~-~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~g~t~L~~A--a~~g~~~~v~~Ll~~g~~~--- 85 (285)
T 3d9h_A 14 LVPRGSHMASMDGKQG-GMDGSKPAGPRDFPGIRLLSNPLM--GDAVSDWSPMHEA--AIHGHQLSLRNLISQGWAV--- 85 (285)
T ss_dssp -----------------------------CCSEECCCCTTC--SSSCCSCCHHHHH--HHTTCHHHHHHHHHTTCCS---
T ss_pred HHHHHHHHHhhcCCCC-CcccCCCCccccccchhhhhCccc--CCCccCCCHHHHH--HHcCCHHHHHHHHHCCCCC---
Confidence 5689999999999988 6666432 13333 4556799999999 9999999999999852110
Q ss_pred hhccChhhhhhHHHHHHhHhhhhCCCCCCCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHH
Q 040452 73 LHKSMPKAILRSTLLRNLAILIYCPADDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMV 152 (316)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v 152 (316)
...+..|.||||+|+..|+.+++++|++.+.+++ ..+..|.||||+|+..|+.+++
T Consensus 86 -----------------------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~~~~~~v 141 (285)
T 3d9h_A 86 -----------------------NIITADHVSPLHEACLGGHLSCVKILLKHGAQVN-GVTADWHTPLFNACVSGSWDCV 141 (285)
T ss_dssp -----------------------CEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHH
T ss_pred -----------------------CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCHHHHH
Confidence 0135789999999999999999999999999865 7788999999999999999999
Q ss_pred HHHHhCCCCCccCCCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHH
Q 040452 153 IELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLI 232 (316)
Q Consensus 153 ~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~ 232 (316)
++|++.|++++..+ .|.||||+|+..|+.+ ++++|++.+. ..+..|..|.||||+|+..|+.+++
T Consensus 142 ~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~------------~v~~Ll~~g~--~~~~~d~~g~t~L~~A~~~~~~~~v 206 (285)
T 3d9h_A 142 NLLLQHGASVQPES-DLASPIHEAARRGHVE------------CVNSLIAYGG--NIDHKISHLGTPLYLACENQQRACV 206 (285)
T ss_dssp HHHHHTTCCSSCSC-TTSCHHHHHHHHTCHH------------HHHHHHHTTC--CTTCCBTTTBCHHHHHHHTTCHHHH
T ss_pred HHHHHCCCCCCCCC-CCCCHHHHHHHcCCHH------------HHHHHHHCCC--CCCCcCCCCCCHHHHHHHcCcHHHH
Confidence 99999999987654 5999999999999999 9999999998 6788899999999999999999999
Q ss_pred HHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCCC---CCCCCCChHHHHHHcCCHHHHHHHHhc-ccccc
Q 040452 233 HMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPE---FNGEGDTPLPVAAKFGHFNIANVLIKR-EKLAQ 308 (316)
Q Consensus 233 ~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~---~~~~g~t~l~~A~~~~~~~~~~~Ll~~-g~~~~ 308 (316)
++|++.|++ . + .+..|.||||+|+..|+.+++++|++.|++ .|..|.|||++|+ ++.+++++|+++ |+++.
T Consensus 207 ~~Ll~~ga~-~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~ 281 (285)
T 3d9h_A 207 KKLLESGAD-V-N-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLEREGASLP 281 (285)
T ss_dssp HHHHHTTCC-T-T-CCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC-----
T ss_pred HHHHHCCCC-C-C-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCC
Confidence 999999998 4 3 478899999999999999999999999998 6788999999999 457999999998 77765
Q ss_pred Cc
Q 040452 309 HE 310 (316)
Q Consensus 309 ~~ 310 (316)
.+
T Consensus 282 ~~ 283 (285)
T 3d9h_A 282 KP 283 (285)
T ss_dssp --
T ss_pred CC
Confidence 43
No 8
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.5e-40 Score=271.49 Aligned_cols=227 Identities=21% Similarity=0.142 Sum_probs=178.3
Q ss_pred ccccccCcchhhhhhhccc-------------CcchHHHHHHHHhhchhhhhccChhhhhhHHHHHHhHhhhhCCCCCCC
Q 040452 36 LTAQAKNRIRHINIISQKS-------------KTGSTKFMEEILEICPSVLHKSMPKAILRSTLLRNLAILIYCPADDEN 102 (316)
Q Consensus 36 ~~~~~~~t~L~~A~~~~~g-------------~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~ 102 (316)
..+..|.||||+| +..| +.+++++|++.... . ....+..|
T Consensus 5 ~~d~~g~tpL~~A--~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~---------------~----------~~~~d~~g 57 (253)
T 1yyh_A 5 VRGPDGFTPLMIA--SCSGGGLETGNSEEEEDAPAVISDFIYQGAS---------------L----------HNQTDRTG 57 (253)
T ss_dssp --------------------------------------------------------------------------CCCTTS
T ss_pred CCCCCCCcHHHHH--HhccccccccchhhcCCChHHHHHHHHccCC---------------c----------ccccCCCC
Confidence 5566799999999 9988 56666666654111 0 01236789
Q ss_pred CcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCC-CCccCCCCCCCHHHHHHHhhc
Q 040452 103 NTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENST-SVSYEGPNGKTALHAAAMHFY 181 (316)
Q Consensus 103 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~-~~~~~~~~~~t~L~~a~~~~~ 181 (316)
.||||+|+..|+.+++++|++.|.+++ ..+..|.||||+|+..|+.+++++|++.+. +++..+..|.||||+|+..++
T Consensus 58 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~ 136 (253)
T 1yyh_A 58 ETALHLAARYSRSDAAKRLLEASADAN-IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAV 136 (253)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTC
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcCh
Confidence 999999999999999999999999965 778889999999999999999999999997 899999999999999999999
Q ss_pred cccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhc
Q 040452 182 YGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQ 261 (316)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~ 261 (316)
.+ ++++|++.+. ..+..+..|.||||+|+..|+.+++++|+++|++ . +..+..|.||||+|+..
T Consensus 137 ~~------------~v~~Ll~~g~--~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~-~~~~~~g~tpL~~A~~~ 200 (253)
T 1yyh_A 137 EG------------MLEDLINSHA--DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-K-DMQNNREETPLFLAARE 200 (253)
T ss_dssp SS------------HHHHHHHTTC--CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-T-TCCCTTSCCHHHHHHHH
T ss_pred HH------------HHHHHHHcCC--CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-C-CCcCCCCCCHHHHHHHC
Confidence 99 9999999998 7788899999999999999999999999999998 5 77899999999999999
Q ss_pred CCHHHHHHHHhcCCC---CCCCCCChHHHHHHcCCHHHHHHHHhcccc
Q 040452 262 RHARTVKTILSLNPE---FNGEGDTPLPVAAKFGHFNIANVLIKREKL 306 (316)
Q Consensus 262 ~~~~~v~~L~~~~~~---~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~ 306 (316)
|+.+++++|+++|++ .+..|.||+++|++.|+.+++++|.+....
T Consensus 201 ~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~~ 248 (253)
T 1yyh_A 201 GSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHH 248 (253)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC----
T ss_pred CCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence 999999999999998 668899999999999999999999876543
No 9
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=5.6e-42 Score=294.71 Aligned_cols=261 Identities=13% Similarity=0.057 Sum_probs=226.9
Q ss_pred CCCchHHHHHHcCCCCcccccccccccccccccccccCcchhhhhhhcccCcchHHHHHHHHhhchhhhhccChhhhhhH
Q 040452 5 STHPNLFKAAAEGHADEPFKKDTRSNEIRGLLTAQAKNRIRHINIISQKSKTGSTKFMEEILEICPSVLHKSMPKAILRS 84 (316)
Q Consensus 5 ~~~~~l~~A~~~g~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~A~~~~~g~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~ 84 (316)
.+.||||.||..|+++ +|++|++ .+.+....+..|.||||+| +..|+.+++++|++....
T Consensus 19 ~g~t~L~~Aa~~g~~~-~v~~Ll~-~g~~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~g~~---------------- 78 (364)
T 3ljn_A 19 ENMEKIHVAARKGQTD-EVRRLIE-TGVSPTIQNRFGCTALHLA--CKFGCVDTAKYLASVGEV---------------- 78 (364)
T ss_dssp HHHHHHHHHHHHTCHH-HHHHHHH-TTCCTTCCCTTCCCHHHHH--HHHCCHHHHHHHHHHCCC----------------
T ss_pred CCCCHHHHHHHcCCHH-HHHHHHH-cCCCccccCCCCCcHHHHH--HHcCCHHHHHHHHHCCCC----------------
Confidence 4568999999999999 9999999 6777667777899999999 999999999999997220
Q ss_pred HHHHHhHhhhhCCCCCCCCcHHhHHHHcCCHHHHHHHHhC----CCCCCC----------------CCCCCCCchhHHHH
Q 040452 85 TLLRNLAILIYCPADDENNTALHEAVCHGNVQVVKILTGQ----DPDYPY----------------SANNYGKTQLYLAA 144 (316)
Q Consensus 85 ~~~~~~~~l~~~~~d~~~~t~l~~A~~~~~~~~~~~Ll~~----~~~~~~----------------~~~~~~~~~l~~a~ 144 (316)
..+..|.||||+|+..|+.+++++|++. +.+... ..+..|.||||+|+
T Consensus 79 ------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~ 146 (364)
T 3ljn_A 79 ------------HSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCV 146 (364)
T ss_dssp ------------CCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHH
T ss_pred ------------ccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHH
Confidence 1134789999999999999999999997 555321 16678999999999
Q ss_pred hcC--CHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCccccc-----cccccccCC
Q 040452 145 KGR--YSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIIL-----KPLFVVIGW 217 (316)
Q Consensus 145 ~~~--~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~-----~~~~~~~~~ 217 (316)
..| +.+++++|++.|++++..+..|.||||+|+..|+.+ ++++|++.+. . .+..+..|.
T Consensus 147 ~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~------------~v~~Ll~~g~--~~~~~~~~~~~~~g~ 212 (364)
T 3ljn_A 147 GLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNRE------------ALDLMMDTVP--SKSSLRLDYANKQGN 212 (364)
T ss_dssp HSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHH------------HHHHHHHHCS--CSSSCCTTCCCTTCC
T ss_pred HcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHH------------HHHHHHhccc--ccccccccccCCCCC
Confidence 999 999999999999999999999999999999999999 9999999887 4 778889999
Q ss_pred cHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCCC---------------CCCCCC
Q 040452 218 TPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPE---------------FNGEGD 282 (316)
Q Consensus 218 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~---------------~~~~g~ 282 (316)
||||+|+..|+.+++++|+++|++ . +..+..|.||||+|+..|+.+++++|++.+++ .+..++
T Consensus 213 t~L~~A~~~g~~~~v~~Ll~~gad-~-~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (364)
T 3ljn_A 213 SHLHWAILINWEDVAMRFVEMGID-V-NMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVW 290 (364)
T ss_dssp CTTHHHHTTTCHHHHHHHHTTTCC-T-TCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCC
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCC-C-CCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCccccccccccc
Confidence 999999999999999999999998 5 78899999999999999999999999999865 235678
Q ss_pred ChHHHHHHcCCHHHHHHHHhccccccCcccc
Q 040452 283 TPLPVAAKFGHFNIANVLIKREKLAQHEDEE 313 (316)
Q Consensus 283 t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~ 313 (316)
+|++.|+..|+.+.+..|+..+++......+
T Consensus 291 ~~l~~aa~~~~~~~v~~ll~~~~~~~~~~~~ 321 (364)
T 3ljn_A 291 LDFVPAAADPSKQEVLQLLQEKLDEVVRSLN 321 (364)
T ss_dssp CTTSCSSCCHHHHHHHHHHHHHHHHHHTC--
T ss_pred ccchhhhhccCHHHHHHHHHHHHHHHhhccC
Confidence 9999999999888888888887766544443
No 10
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.2e-39 Score=270.67 Aligned_cols=240 Identities=20% Similarity=0.110 Sum_probs=188.7
Q ss_pred cccCcchhhhhhhcccCcchHHHHHHHHhhchhhhhccChhhhhhHHHHHHhHhhhhC---CCCCCCCcHHhHHHHcCCH
Q 040452 39 QAKNRIRHINIISQKSKTGSTKFMEEILEICPSVLHKSMPKAILRSTLLRNLAILIYC---PADDENNTALHEAVCHGNV 115 (316)
Q Consensus 39 ~~~~t~L~~A~~~~~g~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~d~~~~t~l~~A~~~~~~ 115 (316)
..|.|+||+| +..|+.+.+..++...+...... .++.. ..+..|.||||+|+..|+.
T Consensus 13 ~~~~~~lH~A--a~~g~~~~~~~~~~~~~~~~~~~------------------~l~~~~~~~~~~~g~t~L~~Aa~~g~~ 72 (285)
T 3d9h_A 13 GLVPRGSHMA--SMDGKQGGMDGSKPAGPRDFPGI------------------RLLSNPLMGDAVSDWSPMHEAAIHGHQ 72 (285)
T ss_dssp -------------------------------CCSE------------------ECCCCTTCSSSCCSCCHHHHHHHTTCH
T ss_pred hHHHHHHHHH--hhcCCCCCcccCCCCccccccch------------------hhhhCcccCCCccCCCHHHHHHHcCCH
Confidence 3599999999 99999877777766532211100 11111 3578899999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhhccccccccCcccHHH
Q 040452 116 QVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVI 195 (316)
Q Consensus 116 ~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~ 195 (316)
+++++|++.+.+++ ..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+
T Consensus 73 ~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~------------ 139 (285)
T 3d9h_A 73 LSLRNLISQGWAVN-IITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWD------------ 139 (285)
T ss_dssp HHHHHHHHTTCCSC-EECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHH------------
T ss_pred HHHHHHHHCCCCCC-CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHH------------
Confidence 99999999999865 77889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCC
Q 040452 196 IAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275 (316)
Q Consensus 196 ~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~ 275 (316)
++++|++.+. ..+. +..|.||||+|+..|+.+++++|++.+++ . +..+..|.||||+|+..|+.+++++|++.|+
T Consensus 140 ~v~~Ll~~g~--~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga 214 (285)
T 3d9h_A 140 CVNLLLQHGA--SVQP-ESDLASPIHEAARRGHVECVNSLIAYGGN-I-DHKISHLGTPLYLACENQQRACVKKLLESGA 214 (285)
T ss_dssp HHHHHHHTTC--CSSC-SCTTSCHHHHHHHHTCHHHHHHHHHTTCC-T-TCCBTTTBCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHCCC--CCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCC-C-CCcCCCCCCHHHHHHHcCcHHHHHHHHHCCC
Confidence 9999999988 3332 44599999999999999999999999998 4 7789999999999999999999999999999
Q ss_pred C--CCCCCCChHHHHHHcCCHHHHHHHHhccccccCccccccC
Q 040452 276 E--FNGEGDTPLPVAAKFGHFNIANVLIKREKLAQHEDEELES 316 (316)
Q Consensus 276 ~--~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~ 316 (316)
+ .+..|.|||++|+..|+.+++++|+++|++++.+|.+|..
T Consensus 215 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t 257 (285)
T 3d9h_A 215 DVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKR 257 (285)
T ss_dssp CTTCCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCC
Confidence 8 4568999999999999999999999999999999998863
No 11
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.4e-39 Score=262.12 Aligned_cols=224 Identities=23% Similarity=0.164 Sum_probs=205.6
Q ss_pred ccCcchhhhhhhcccCcchHHHHHHHHhhchhhhhccChhhhhhHHHHHHhHhhhhCCCCCCCCcHHhHHHHcCCHHHHH
Q 040452 40 AKNRIRHINIISQKSKTGSTKFMEEILEICPSVLHKSMPKAILRSTLLRNLAILIYCPADDENNTALHEAVCHGNVQVVK 119 (316)
Q Consensus 40 ~~~t~L~~A~~~~~g~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~t~l~~A~~~~~~~~~~ 119 (316)
.+.+|||.| +..|+.+++++|++..... -...+..|.||||+|+..|+.++++
T Consensus 5 ~~~~~l~~A--~~~g~~~~v~~ll~~~~~~-------------------------~~~~~~~g~t~L~~A~~~g~~~~v~ 57 (231)
T 3aji_A 5 VSNIMICNL--AYSGKLDELKERILADKSL-------------------------ATRTDQDSRTALHWACSAGHTEIVE 57 (231)
T ss_dssp CSSSHHHHH--HHHTCHHHHHHHHHHCGGG-------------------------GGCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred cccchHHHH--HHhCCHHHHHHHHHhchhh-------------------------hhcCCCCCCCHHHHHHHcCcHHHHH
Confidence 478999999 9999999999999862210 1134678999999999999999999
Q ss_pred HHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhhccccccccCcccHHHHHHH
Q 040452 120 ILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAAS 199 (316)
Q Consensus 120 ~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~ 199 (316)
+|++.+.+++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+ ++++
T Consensus 58 ~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~------------~~~~ 124 (231)
T 3aji_A 58 FLLQLGVPVN-DKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHE------------IAVM 124 (231)
T ss_dssp HHHHTTCCSC-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH------------HHHH
T ss_pred HHHHhCCCCC-CcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH------------HHHH
Confidence 9999998865 67888999999999999999999999999999999999999999999999999 9999
Q ss_pred HhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCCC---
Q 040452 200 LLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPE--- 276 (316)
Q Consensus 200 Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~--- 276 (316)
|++.+. ..+..+..|.||||.|+..|+.+++++|++.+++ . +..+..|.||||+|+..|+.+++++|+++|++
T Consensus 125 Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 200 (231)
T 3aji_A 125 LLEGGA--NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS-T-NIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYI 200 (231)
T ss_dssp HHHTTC--CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-S-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred HHHcCC--CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC-c-cccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC
Confidence 999998 6778899999999999999999999999999998 4 77889999999999999999999999999998
Q ss_pred CCCCCCChHHHHHHcCCHHHHHHHHhccccc
Q 040452 277 FNGEGDTPLPVAAKFGHFNIANVLIKREKLA 307 (316)
Q Consensus 277 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~ 307 (316)
.+..|.||+++|+..++.+++++|.++|+++
T Consensus 201 ~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~i 231 (231)
T 3aji_A 201 ENKEEKTPLQVAKGGLGLILKRLAEGEEASM 231 (231)
T ss_dssp CCTTSCCHHHHSCHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCHHHHHHhhHHHHHHHHHccccccC
Confidence 5688999999999999999999999999864
No 12
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=5.1e-40 Score=269.56 Aligned_cols=246 Identities=13% Similarity=0.033 Sum_probs=199.0
Q ss_pred CCCchHHHHHHcCCCCcccccccccccccccccccccCcchhhhhhhcccCcchHHHHHHHHhhchhhhhccChhhhhhH
Q 040452 5 STHPNLFKAAAEGHADEPFKKDTRSNEIRGLLTAQAKNRIRHINIISQKSKTGSTKFMEEILEICPSVLHKSMPKAILRS 84 (316)
Q Consensus 5 ~~~~~l~~A~~~g~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~A~~~~~g~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~ 84 (316)
.+.||||.||..|+.+ ++++|++ .+.+....+..|.||||+| +..|+.+++++|++.....
T Consensus 2 ~g~t~L~~A~~~g~~~-~v~~Ll~-~g~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~~g~~~--------------- 62 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQL-SLRNLIS-QGWAVNIITADHVSPLHEA--CLGGHLSCVKILLKHGAQV--------------- 62 (261)
T ss_dssp --CCHHHHHHHHTCHH-HHHHHHH-TTCCSSCCCTTCCCHHHHH--HHHTCHHHHHHHHHTTCCT---------------
T ss_pred CCCCHHHHHHHcCCHH-HHHHHHH-CCCCCCCcCCCCCCHHHHH--HHcCCHHHHHHHHHCCCCC---------------
Confidence 3578999999999999 9999998 6666556666789999999 9999999999998852100
Q ss_pred HHHHHhHhhhhCCCCCCCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCcc
Q 040452 85 TLLRNLAILIYCPADDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSY 164 (316)
Q Consensus 85 ~~~~~~~~l~~~~~d~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~ 164 (316)
...+..|.||||+|+..|+.+++++|++.++++. .+..|.||||+|+..|+.+++++|+++|++++.
T Consensus 63 -----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 129 (261)
T 2xai_A 63 -----------NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPIHEAARRGHVECVNSLIAYGGNIDH 129 (261)
T ss_dssp -----------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred -----------CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCc
Confidence 1235678899999999999999999999888864 345588999999999999999999999999998
Q ss_pred CCCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCCcc
Q 040452 165 EGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFK 244 (316)
Q Consensus 165 ~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~ 244 (316)
.+..|.||||+|+..++.+ ++++|++.+. ..+ .+..|.||||+|+..|+.+++++|++.|++ .
T Consensus 130 ~~~~g~t~L~~A~~~~~~~------------~v~~Ll~~g~--~~~-~~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad-~- 192 (261)
T 2xai_A 130 KISHLGTPLYLACENQQRA------------CVKKLLESGA--DVN-QGKGQDSPLHAVARTASEELACLLMDFGAD-T- 192 (261)
T ss_dssp CBTTTBCHHHHHHHTTCHH------------HHHHHHHHTC--CTT-CCBTTBCHHHHHHHHTCHHHHHHHHHTTCC-T-
T ss_pred CCCCCCCHHHHHHHhCCHH------------HHHHHHHcCC--CCC-CCCCCCChHHHHHHcCCHHHHHHHHHcCCC-C-
Confidence 9999999999999999888 9999998887 344 377889999999999999999999999888 4
Q ss_pred ccccCCCchHHHHHHhcCCHHHHHHHHhcCCC-----------CCCCCCChHHHHHHcCCHHHHHHHH
Q 040452 245 YCCQRSKMTALRLAAGQRHARTVKTILSLNPE-----------FNGEGDTPLPVAAKFGHFNIANVLI 301 (316)
Q Consensus 245 ~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~-----------~~~~g~t~l~~A~~~~~~~~~~~Ll 301 (316)
+..+..|.||+++|+..+ +++++|++.+.. ++..|.|+++.|.+....+.++-++
T Consensus 193 ~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~~p~~l~~~l 258 (261)
T 2xai_A 193 QAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLKQFL 258 (261)
T ss_dssp TCCCTTSCCGGGGSCTTC--THHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGGSSSCHHHHHHH
T ss_pred CCcCCCCCChhhhccccc--cHHHHHHhccCCccHHHHHHHHHHHHhchhccccCcccCCcHHHHHHH
Confidence 778889999999998655 478888887664 4678899999888877665555443
No 13
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=2.4e-39 Score=262.39 Aligned_cols=229 Identities=21% Similarity=0.199 Sum_probs=198.2
Q ss_pred ccccccCcchhhhhhhcccCcchHHHHHHHHhhchhhhhccChhhhhhHHHHHHhHhhhhCCCCCCCCcHHhHHHHcCCH
Q 040452 36 LTAQAKNRIRHINIISQKSKTGSTKFMEEILEICPSVLHKSMPKAILRSTLLRNLAILIYCPADDENNTALHEAVCHGNV 115 (316)
Q Consensus 36 ~~~~~~~t~L~~A~~~~~g~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~t~l~~A~~~~~~ 115 (316)
..+..|.||||+| +..|+.+++++|++........+ ...+..|.||||+|+..|+.
T Consensus 4 ~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~~~~~~~~~----------------------~~~~~~g~t~L~~A~~~~~~ 59 (241)
T 1k1a_A 4 RADEDGDTPLHIA--VVQGNLPAVHRLVNLFQQGGREL----------------------DIYNNLRQTPLHLAVITTLP 59 (241)
T ss_dssp ---CTTCCHHHHH--HHTTCHHHHHHHHHHHHHTTCCS----------------------CCCCTTSCCHHHHHHHTTCH
T ss_pred ccCCCCCcHHHHH--HHcCCHHHHHHHHHHHHhcCCCC----------------------CcccccCCCHHHHHHHcCCH
Confidence 3456699999999 99999999999998532211100 12357799999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCC----CCccCCCCCCCHHHHHHHhhccccccccCcc
Q 040452 116 QVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENST----SVSYEGPNGKTALHAAAMHFYYGKCLVCSSE 191 (316)
Q Consensus 116 ~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~----~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~ 191 (316)
+++++|++.|.++. ..+..|.||||+|+..|+.+++++|++.+. +++..+..|.||||+|+..++.+
T Consensus 60 ~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~-------- 130 (241)
T 1k1a_A 60 SVVRLLVTAGASPM-ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQE-------- 130 (241)
T ss_dssp HHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHH--------
T ss_pred HHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHH--------
Confidence 99999999999865 678889999999999999999999999987 88889999999999999999999
Q ss_pred cHHHHHHHHhcCcccccccccc-ccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHH
Q 040452 192 NWVIIAASLLNNKVIILKPLFV-VIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTI 270 (316)
Q Consensus 192 ~~~~~~~~Ll~~~~~~~~~~~~-~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L 270 (316)
++++|++.+. ..+..+ ..|.||||.|+..|+.+++++|+++|++ . +..+..|.||||+|+..|+.+++++|
T Consensus 131 ----~~~~Ll~~g~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~-~~~~~~g~t~L~~A~~~~~~~~v~~L 202 (241)
T 1k1a_A 131 ----TVQLLLERGA--DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-V-NAQMYSGSSALHSASGRGLLPLVRTL 202 (241)
T ss_dssp ----HHHHHHHTTC--CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-T-TCBCTTSCBHHHHHHHHTCHHHHHHH
T ss_pred ----HHHHHHHcCC--CcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCC-C-CCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 9999999998 566666 7899999999999999999999999998 4 77889999999999999999999999
Q ss_pred HhcCCC---CCCCCCChHHHHHHcCCHHHHHHHHhccc
Q 040452 271 LSLNPE---FNGEGDTPLPVAAKFGHFNIANVLIKREK 305 (316)
Q Consensus 271 ~~~~~~---~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~ 305 (316)
++.|++ .+..|.|||++|+..|+.++++.|.++++
T Consensus 203 l~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a 240 (241)
T 1k1a_A 203 VRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240 (241)
T ss_dssp HHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred HhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence 999998 56789999999999999999999999876
No 14
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=2.2e-39 Score=261.00 Aligned_cols=230 Identities=21% Similarity=0.206 Sum_probs=204.9
Q ss_pred CCCCCCCchHHHHHHcCCCCcccccccccccccccccccccCcchhhhhhhcccCcchHHHHHHHHhhchhhhhccChhh
Q 040452 1 MNPVSTHPNLFKAAAEGHADEPFKKDTRSNEIRGLLTAQAKNRIRHINIISQKSKTGSTKFMEEILEICPSVLHKSMPKA 80 (316)
Q Consensus 1 ~~~~~~~~~l~~A~~~g~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~A~~~~~g~~~i~~~L~~~~~~~~~~~~~~~~~~ 80 (316)
|+....+++|+.||..|+++ .+++|++.........+..|.||||+| +..|+.+++++|++....
T Consensus 1 me~~~~~~~l~~A~~~g~~~-~v~~ll~~~~~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~~g~~------------ 65 (231)
T 3aji_A 1 MEGCVSNIMICNLAYSGKLD-ELKERILADKSLATRTDQDSRTALHWA--CSAGHTEIVEFLLQLGVP------------ 65 (231)
T ss_dssp --CCCSSSHHHHHHHHTCHH-HHHHHHHHCGGGGGCCCTTSCCHHHHH--HHHTCHHHHHHHHHTTCC------------
T ss_pred CCCccccchHHHHHHhCCHH-HHHHHHHhchhhhhcCCCCCCCHHHHH--HHcCcHHHHHHHHHhCCC------------
Confidence 67788999999999999999 999999843332235566799999999 999999999999986211
Q ss_pred hhhHHHHHHhHhhhhCCCCCCCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCC
Q 040452 81 ILRSTLLRNLAILIYCPADDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENST 160 (316)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~d~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~ 160 (316)
-...+..|.||||+|+..++.+++++|++.+.++. ..+..|.||||+|+..++.+++++|++.|+
T Consensus 66 --------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 130 (231)
T 3aji_A 66 --------------VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130 (231)
T ss_dssp --------------SCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred --------------CCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 01246789999999999999999999999999865 678889999999999999999999999999
Q ss_pred CCccCCCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcCC
Q 040452 161 SVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGS 240 (316)
Q Consensus 161 ~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~ 240 (316)
+++..+..|.||||+|+..++.+ ++++|++.+. ..+..|..|.||||+|+..|+.+++++|+++|+
T Consensus 131 ~~~~~~~~g~t~L~~A~~~~~~~------------~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga 196 (231)
T 3aji_A 131 NPDAKDHYDATAMHRAAAKGNLK------------MVHILLFYKA--STNIQDTEGNTPLHLACDEERVEEAKFLVTQGA 196 (231)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHH------------HHHHHHHTTC--CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCcCCCCCcHHHHHHHcCCHH------------HHHHHHhcCC--CccccCCCCCCHHHHHHHCCCHHHHHHHHHCCC
Confidence 99999999999999999999999 9999999998 678889999999999999999999999999999
Q ss_pred CCccccccCCCchHHHHHHhcCCHHHHHHHHhcCCC
Q 040452 241 NCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPE 276 (316)
Q Consensus 241 ~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~ 276 (316)
+ . +..+..|.||+++|+..++.+++++|.+.+++
T Consensus 197 ~-~-~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 197 S-I-YIENKEEKTPLQVAKGGLGLILKRLAEGEEAS 230 (231)
T ss_dssp C-S-CCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred C-C-CCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence 8 5 78899999999999999999999999988753
No 15
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.5e-38 Score=263.91 Aligned_cols=233 Identities=19% Similarity=0.162 Sum_probs=209.3
Q ss_pred ccCcchhhhhhhcccCcchHHHHHHHHhhchhhhhccChhhhhhHHHHHHhHhhhhCCCCCCCCcHHhHHHHcCCHHHHH
Q 040452 40 AKNRIRHINIISQKSKTGSTKFMEEILEICPSVLHKSMPKAILRSTLLRNLAILIYCPADDENNTALHEAVCHGNVQVVK 119 (316)
Q Consensus 40 ~~~t~L~~A~~~~~g~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~t~l~~A~~~~~~~~~~ 119 (316)
.|.|||+.| +..|+.+++++|++.... +....+..|.||||+|+..|+.++++
T Consensus 4 ~g~~~L~~A--~~~g~~~~v~~Ll~~g~~-------------------------~~~~~~~~g~t~L~~A~~~g~~~~v~ 56 (285)
T 1wdy_A 4 EDNHLLIKA--VQNEDVDLVQQLLEGGAN-------------------------VNFQEEEGGWTPLHNAVQMSREDIVE 56 (285)
T ss_dssp HHHHHHHHH--HHTTCHHHHHHHHHTTCC-------------------------TTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred ccchHHHHH--HHcCCHHHHHHHHHcCCC-------------------------cccccCCCCCcHHHHHHHcCCHHHHH
Confidence 488999999 999999999999986211 01112567899999999999999999
Q ss_pred HHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhhccccccccCcccHHHHHHH
Q 040452 120 ILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAAS 199 (316)
Q Consensus 120 ~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~ 199 (316)
+|++.|.++. ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+ ++++
T Consensus 57 ~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~------------~~~~ 123 (285)
T 1wdy_A 57 LLLRHGADPV-LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK------------ALKF 123 (285)
T ss_dssp HHHHTTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHH------------HHHH
T ss_pred HHHHcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHH------------HHHH
Confidence 9999999865 67888999999999999999999999999999999999999999999999999 9999
Q ss_pred HhcCccccccccc----------cccCCcHHHHHHhcCCHHHHHHHHhc-CCCCccccccCCCchHHHHHHhcCC----H
Q 040452 200 LLNNKVIILKPLF----------VVIGWTPIHYAAYYDQYQLIHMLLKR-GSNCFKYCCQRSKMTALRLAAGQRH----A 264 (316)
Q Consensus 200 Ll~~~~~~~~~~~----------~~~~~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~t~l~~A~~~~~----~ 264 (316)
|++.+. ..+.. +..|.||||.|+..|+.+++++|++. +.+ . +..+..|.||||.|+..++ .
T Consensus 124 Ll~~g~--~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~-~~~~~~g~t~l~~a~~~~~~~~~~ 199 (285)
T 1wdy_A 124 LYKRGA--NVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD-V-NACDNMGRNALIHALLSSDDSDVE 199 (285)
T ss_dssp HHHTTC--CTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCC-T-TCCCTTSCCHHHHHHHCSCTTTHH
T ss_pred HHHhCC--CcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCC-C-CccCCCCCCHHHHHHHccccchHH
Confidence 999988 44444 67799999999999999999999987 776 4 7788999999999999999 9
Q ss_pred HHHHHHHhcCCC---CCCCCCChHHHHHHcCCHHHHHHHHh-ccccccCccccccC
Q 040452 265 RTVKTILSLNPE---FNGEGDTPLPVAAKFGHFNIANVLIK-REKLAQHEDEELES 316 (316)
Q Consensus 265 ~~v~~L~~~~~~---~~~~g~t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~ 316 (316)
+++++|++.|++ .+..|.||||+|+..|+.+++++|++ +|++++..+.+|.+
T Consensus 200 ~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t 255 (285)
T 1wdy_A 200 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKT 255 (285)
T ss_dssp HHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCC
T ss_pred HHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCc
Confidence 999999999998 56789999999999999999999999 89999999988753
No 16
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2e-39 Score=278.73 Aligned_cols=230 Identities=15% Similarity=0.117 Sum_probs=203.9
Q ss_pred cccccccCcchhhhhhhcccCcchHHHHHHHHhhchhhhhccChhhhhhHHHHHHhHhhhhCCCCCCCCcHHhHHHHcCC
Q 040452 35 LLTAQAKNRIRHINIISQKSKTGSTKFMEEILEICPSVLHKSMPKAILRSTLLRNLAILIYCPADDENNTALHEAVCHGN 114 (316)
Q Consensus 35 ~~~~~~~~t~L~~A~~~~~g~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~t~l~~A~~~~~ 114 (316)
...+..|.||||+| +..|+.+++++|++..... ...+..|.||||+|+..|+
T Consensus 14 ~~~d~~g~t~L~~A--a~~g~~~~v~~Ll~~g~~~--------------------------~~~d~~g~t~L~~A~~~g~ 65 (364)
T 3ljn_A 14 IKSDDENMEKIHVA--ARKGQTDEVRRLIETGVSP--------------------------TIQNRFGCTALHLACKFGC 65 (364)
T ss_dssp --CCHHHHHHHHHH--HHHTCHHHHHHHHHTTCCT--------------------------TCCCTTCCCHHHHHHHHCC
T ss_pred cccCCCCCCHHHHH--HHcCCHHHHHHHHHcCCCc--------------------------cccCCCCCcHHHHHHHcCC
Confidence 35566799999999 9999999999999862110 1246789999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhC----CCCCcc-----------------CCCCCCCHH
Q 040452 115 VQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLEN----STSVSY-----------------EGPNGKTAL 173 (316)
Q Consensus 115 ~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~----g~~~~~-----------------~~~~~~t~L 173 (316)
.+++++|++.+.+.. ...|.||||+|+..|+.+++++|++. |.+++. .+..|.|||
T Consensus 66 ~~~v~~Ll~~g~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L 142 (364)
T 3ljn_A 66 VDTAKYLASVGEVHS---LWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTAL 142 (364)
T ss_dssp HHHHHHHHHHCCCCC---CBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHH
T ss_pred HHHHHHHHHCCCCcc---ccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHH
Confidence 999999999998643 45799999999999999999999999 887776 888999999
Q ss_pred HHHHHhh--ccccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCC---cccccc
Q 040452 174 HAAAMHF--YYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNC---FKYCCQ 248 (316)
Q Consensus 174 ~~a~~~~--~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~---~~~~~~ 248 (316)
|+|+..| +.+ ++++|++.+. ..+..|..|.||||+|+..|+.+++++|++.+++. ..+..+
T Consensus 143 ~~A~~~g~~~~~------------~v~~Ll~~ga--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 208 (364)
T 3ljn_A 143 HWCVGLGPEYLE------------MIKILVQLGA--SPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYAN 208 (364)
T ss_dssp HHHHHSCGGGHH------------HHHHHHHHTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCC
T ss_pred HHHHHcCCchHH------------HHHHHHHcCC--CCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccC
Confidence 9999999 889 9999999998 77888999999999999999999999999988761 146778
Q ss_pred CCCchHHHHHHhcCCHHHHHHHHhcCCC---CCCCCCChHHHHHHcCCHHHHHHHHhccccccC
Q 040452 249 RSKMTALRLAAGQRHARTVKTILSLNPE---FNGEGDTPLPVAAKFGHFNIANVLIKREKLAQH 309 (316)
Q Consensus 249 ~~~~t~l~~A~~~~~~~~v~~L~~~~~~---~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~ 309 (316)
..|.||||+|+..|+.+++++|++.|++ .+..|.|||++|+..|+.+++++|+++|++++.
T Consensus 209 ~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~ 272 (364)
T 3ljn_A 209 KQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLI 272 (364)
T ss_dssp TTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHH
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhh
Confidence 8999999999999999999999999998 568899999999999999999999999988644
No 17
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=3.4e-38 Score=255.05 Aligned_cols=222 Identities=22% Similarity=0.173 Sum_probs=196.5
Q ss_pred ccccccCcchhhhhhhcccCcchHHHHHHHHhhchhhhhccChhhhhhHHHHHHhHhhhhCCCCCCCCcHHhHHHHcCCH
Q 040452 36 LTAQAKNRIRHINIISQKSKTGSTKFMEEILEICPSVLHKSMPKAILRSTLLRNLAILIYCPADDENNTALHEAVCHGNV 115 (316)
Q Consensus 36 ~~~~~~~t~L~~A~~~~~g~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~t~l~~A~~~~~~ 115 (316)
..+..|.||||+| +..|+.+++++|++..... ...+..|.||||+|+..|+.
T Consensus 6 ~~~~~g~t~L~~A--~~~g~~~~v~~Ll~~g~~~--------------------------~~~~~~g~t~L~~A~~~~~~ 57 (237)
T 3b7b_A 6 MEHQNKRSPLHAA--AEAGHVDICHMLVQAGANI--------------------------DTCSEDQRTPLMEAAENNHL 57 (237)
T ss_dssp CSSCCSCCHHHHH--HHHTCHHHHHHHHHTTCCT--------------------------TCCCTTCCCHHHHHHHTTCH
T ss_pred cccCCCCCHHHHH--HHcCcHHHHHHHHHcCCCc--------------------------CccCCCCCCHHHHHHHhCCH
Confidence 5566799999999 9999999999999862110 02356789999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCC-CCCccCCCCCCCHHHHHHHhhccccccccCcccHH
Q 040452 116 QVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENS-TSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWV 194 (316)
Q Consensus 116 ~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g-~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~ 194 (316)
+++++|++.+.++. ..+..|.||||+|+..|+.+++++|++.| .+++..+..|.||||+|+..++.+
T Consensus 58 ~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~----------- 125 (237)
T 3b7b_A 58 EAVKYLIKAGALVD-PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVD----------- 125 (237)
T ss_dssp HHHHHHHTTTCCCC-CCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHH-----------
T ss_pred HHHHHHHhCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHH-----------
Confidence 99999999998865 67788999999999999999999999998 889999999999999999999999
Q ss_pred HHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcC
Q 040452 195 IIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLN 274 (316)
Q Consensus 195 ~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~ 274 (316)
++++|++.+. ..+..+..|.||||.|+..|+.+++++|++.|++ . +..+..|.||||+|+..|+.+++++|+++|
T Consensus 126 -~~~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 200 (237)
T 3b7b_A 126 -LVKLLLSKGS--DINIRDNEENICLHWAAFSGCVDIAEILLAAKCD-L-HAVNIHGDSPLHIAARENRYDCVVLFLSRD 200 (237)
T ss_dssp -HHHHHHHTTC--CTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCC-T-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred -HHHHHHHCCC--CCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-C-CCcCCCCCCHHHHHHHhCCHhHHHHHHHcC
Confidence 9999999988 6778889999999999999999999999999988 4 678889999999999999999999999999
Q ss_pred CC---CCCCCCChHHHHHHcCCHHHHHHHHh
Q 040452 275 PE---FNGEGDTPLPVAAKFGHFNIANVLIK 302 (316)
Q Consensus 275 ~~---~~~~g~t~l~~A~~~~~~~~~~~Ll~ 302 (316)
++ .+..|.|||++|+..++.+.+..|++
T Consensus 201 ad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~ 231 (237)
T 3b7b_A 201 SDVTLKNKEGETPLQCASLNSQVWSALQMSK 231 (237)
T ss_dssp CCTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred CCCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 98 56889999999999998866666654
No 18
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=8.2e-39 Score=261.19 Aligned_cols=227 Identities=22% Similarity=0.146 Sum_probs=175.9
Q ss_pred CCCCCchHHHHHHcC-------------CCCccccccccccccccc-ccccccCcchhhhhhhcccCcchHHHHHHHHhh
Q 040452 3 PVSTHPNLFKAAAEG-------------HADEPFKKDTRSNEIRGL-LTAQAKNRIRHINIISQKSKTGSTKFMEEILEI 68 (316)
Q Consensus 3 ~~~~~~~l~~A~~~g-------------~~~~~~~~ll~~~~~~~~-~~~~~~~t~L~~A~~~~~g~~~i~~~L~~~~~~ 68 (316)
...+.||||.||..| +.+ ++++|++ .+.+.. ..+..|.||||+| +..|+.+++++|++....
T Consensus 7 d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~-~v~~Ll~-~g~~~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~g~~ 82 (253)
T 1yyh_A 7 GPDGFTPLMIASCSGGGLETGNSEEEEDAPA-VISDFIY-QGASLHNQTDRTGETALHLA--ARYSRSDAAKRLLEASAD 82 (253)
T ss_dssp -----------------------------------------------CCCTTSCCHHHHH--HHTTCHHHHHHHHHTTCC
T ss_pred CCCCCcHHHHHHhccccccccchhhcCCChH-HHHHHHH-ccCCcccccCCCCCcHHHHH--HHcCCHHHHHHHHHcCCC
Confidence 456889999999988 899 9999999 666532 3356799999999 999999999999986211
Q ss_pred chhhhhccChhhhhhHHHHHHhHhhhhCCCCCCCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCC
Q 040452 69 CPSVLHKSMPKAILRSTLLRNLAILIYCPADDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRY 148 (316)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~ 148 (316)
. ...+..|.||||+|+..++.+++++|++.++......+..|.||||+|+..|+
T Consensus 83 ~--------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~ 136 (253)
T 1yyh_A 83 A--------------------------NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAV 136 (253)
T ss_dssp T--------------------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTC
T ss_pred C--------------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcCh
Confidence 0 12357899999999999999999999999884455788899999999999999
Q ss_pred HHHHHHHHhCCCCCccCCCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCC
Q 040452 149 SEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQ 228 (316)
Q Consensus 149 ~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~ 228 (316)
.+++++|++.|++++..+..|.||||+|+..++.+ ++++|++.+. ..+..+..|.||||+|+..|+
T Consensus 137 ~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~------------~v~~Ll~~ga--~~~~~~~~g~tpL~~A~~~~~ 202 (253)
T 1yyh_A 137 EGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVD------------AAVVLLKNGA--NKDMQNNREETPLFLAAREGS 202 (253)
T ss_dssp SSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHH------------HHHHHHHTTC--CTTCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH------------HHHHHHHcCC--CCCCcCCCCCCHHHHHHHCCC
Confidence 99999999999999999999999999999999999 9999999998 678889999999999999999
Q ss_pred HHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCC
Q 040452 229 YQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275 (316)
Q Consensus 229 ~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~ 275 (316)
.+++++|+++|++ . +..+..|.||+++|++.|+.+++++|.....
T Consensus 203 ~~~v~~Ll~~ga~-~-~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~ 247 (253)
T 1yyh_A 203 YETAKVLLDHFAN-R-DITDHMDRLPRDIAQERMHHDIVRLLDLEHH 247 (253)
T ss_dssp HHHHHHHHHTTCC-T-TCCCTTCCCHHHHHHHTTCHHHHHHHHC---
T ss_pred HHHHHHHHHcCCC-c-cccccCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 9999999999998 5 7889999999999999999999999997654
No 19
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=3.1e-39 Score=278.20 Aligned_cols=233 Identities=21% Similarity=0.216 Sum_probs=198.4
Q ss_pred ccccCcchhhhhhhcccCcchHHHHHHHHhhchhhhhccChhhhhhHHHHHHhHhhhhCCCC-CCCCcHHhHHHHcCCHH
Q 040452 38 AQAKNRIRHINIISQKSKTGSTKFMEEILEICPSVLHKSMPKAILRSTLLRNLAILIYCPAD-DENNTALHEAVCHGNVQ 116 (316)
Q Consensus 38 ~~~~~t~L~~A~~~~~g~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-~~~~t~l~~A~~~~~~~ 116 (316)
+..|.||||+| +..| .+++++|+.. -+. ..| ..|.||||+|+..|+.+
T Consensus 91 ~~~g~t~L~~A--a~~~-~~~~~~L~~~---------------------------~~n-~~d~~~g~t~Lh~Aa~~g~~~ 139 (373)
T 2fo1_E 91 EPESPIKLHTE--AAGS-YAITEPITRE---------------------------SVN-IIDPRHNRTVLHWIASNSSAE 139 (373)
T ss_dssp ---CCCHHHHH--HHSS-SCCCSCCSTT---------------------------TTT-TCCCSSCCCHHHHHHCTTCCS
T ss_pred CCCCccHHHHH--hcCC-chHHHHhccc---------------------------ccc-ccCCcCCCCHHHHHHHCCCHH
Confidence 34578888888 8744 4677666431 000 123 67999999999999998
Q ss_pred HHHHHH--------hCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhhcccccccc
Q 040452 117 VVKILT--------GQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVC 188 (316)
Q Consensus 117 ~~~~Ll--------~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~ 188 (316)
++++|+ +.|.+++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+
T Consensus 140 ~v~~Ll~~~~~~ll~~ga~vn-~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~----- 213 (373)
T 2fo1_E 140 KSEDLIVHEAKECIAAGADVN-AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFG----- 213 (373)
T ss_dssp CCTTHHHHHHHHHHHTCCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHH-----
T ss_pred HHHHHHHHHHHHHHhcCCCCc-CCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHH-----
Confidence 887776 7888865 77889999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHhcCccc-cccccccccCCcHHHHHHhcC---CHHHHHHHHhcCCCCccc-------cccCCCchHHHH
Q 040452 189 SSENWVIIAASLLNNKVI-ILKPLFVVIGWTPIHYAAYYD---QYQLIHMLLKRGSNCFKY-------CCQRSKMTALRL 257 (316)
Q Consensus 189 ~~~~~~~~~~~Ll~~~~~-~~~~~~~~~~~t~l~~A~~~~---~~~~~~~Ll~~~~~~~~~-------~~~~~~~t~l~~ 257 (316)
++++|++.+.. ...+..+..|.||||+|+..+ +.+++++|++.|++ ... ..+..|.||||+
T Consensus 214 -------~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~d~~g~t~Lh~ 285 (373)
T 2fo1_E 214 -------MMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAK-VDYDGAARKDSEKYKGRTALHY 285 (373)
T ss_dssp -------HHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCC-SSCCSGGGTSSSSCCCCCTHHH
T ss_pred -------HHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCC-cccccccccCcccccCCCHHHH
Confidence 99999998720 156778899999999999998 89999999999988 411 256689999999
Q ss_pred HHhcCCHHHHHHHHhcC-CC---CCCCCCChHHHHHHcCCHHHHHHHHhccccccCcccccc
Q 040452 258 AAGQRHARTVKTILSLN-PE---FNGEGDTPLPVAAKFGHFNIANVLIKREKLAQHEDEELE 315 (316)
Q Consensus 258 A~~~~~~~~v~~L~~~~-~~---~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~ 315 (316)
|+..|+.+++++|++.+ ++ .+..|.||||+|+..|+.+++++|+++|++++..|..|.
T Consensus 286 A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~ 347 (373)
T 2fo1_E 286 AAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDH 347 (373)
T ss_dssp HHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSC
T ss_pred HHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCC
Confidence 99999999999999886 66 668899999999999999999999999999999998875
No 20
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=4.4e-38 Score=260.83 Aligned_cols=204 Identities=24% Similarity=0.209 Sum_probs=182.5
Q ss_pred CCCCCCcHHhHHHHcCCHHHHHHHHhCCCCC--CCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHH
Q 040452 98 ADDENNTALHEAVCHGNVQVVKILTGQDPDY--PYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHA 175 (316)
Q Consensus 98 ~d~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~--~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~ 175 (316)
.|..|.||||+|+..|+.+++++|++.+++. ....+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~ 84 (282)
T 1oy3_D 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHL 84 (282)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 5788999999999999999999999987762 34678889999999999999999999999999999999999999999
Q ss_pred HHHhhccccccccCcccHHHHHHHHhcCccc---------------------------------------------cccc
Q 040452 176 AAMHFYYGKCLVCSSENWVIIAASLLNNKVI---------------------------------------------ILKP 210 (316)
Q Consensus 176 a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~---------------------------------------------~~~~ 210 (316)
|+..++.+ ++++|++.+.. ...+
T Consensus 85 A~~~~~~~------------~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (282)
T 1oy3_D 85 ACRVRAHT------------CACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLE 152 (282)
T ss_dssp HTTTTCHH------------HHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTT
T ss_pred HHHcCCcc------------hhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCC
Confidence 99999999 99999987752 1245
Q ss_pred cccccCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccc-CCCchHHHHHHhcCCHHHHHHHHhcCCC---CCCCCCChHH
Q 040452 211 LFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQ-RSKMTALRLAAGQRHARTVKTILSLNPE---FNGEGDTPLP 286 (316)
Q Consensus 211 ~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~-~~~~t~l~~A~~~~~~~~v~~L~~~~~~---~~~~g~t~l~ 286 (316)
..+..|.||||+|+..|+.+++++|+++|++ . +..+ ..|.||||+|+..|+.+++++|++.|++ ++..|.|||+
T Consensus 153 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~ 230 (282)
T 1oy3_D 153 AENYDGHTPLHVAVIHKDAEMVRLLRDAGAD-L-NKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLG 230 (282)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-T-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred CcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-C-CCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHH
Confidence 6678899999999999999999999999998 5 4455 4599999999999999999999999998 5678999999
Q ss_pred HHHHcCCHHHHHHHHhccccccCcccccc
Q 040452 287 VAAKFGHFNIANVLIKREKLAQHEDEELE 315 (316)
Q Consensus 287 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~ 315 (316)
+|+..|+.+++++|+++|++++..+.+|.
T Consensus 231 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~ 259 (282)
T 1oy3_D 231 SALLRPNPILARLLRAHGAPEPEDGGDKL 259 (282)
T ss_dssp HHHTSSCHHHHHHHHHTTCCCCCCC----
T ss_pred HHHHcCCcHHHHHHHHcCCCcCcCCCccc
Confidence 99999999999999999999999998875
No 21
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=7.7e-38 Score=253.17 Aligned_cols=229 Identities=20% Similarity=0.150 Sum_probs=202.0
Q ss_pred ccccCcchhhhhhhcccCcchHHHHHHHHhhchhhhhccChhhhhhHHHHHHhHhhhhCCCCCCCCcHHhHHHHcCCHHH
Q 040452 38 AQAKNRIRHINIISQKSKTGSTKFMEEILEICPSVLHKSMPKAILRSTLLRNLAILIYCPADDENNTALHEAVCHGNVQV 117 (316)
Q Consensus 38 ~~~~~t~L~~A~~~~~g~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~t~l~~A~~~~~~~~ 117 (316)
+..|.++|+.| +..|+.+++++|++.... -...+..|.||||+|+..|+.++
T Consensus 6 d~~~~~~l~~A--~~~g~~~~~~~Ll~~g~~--------------------------~~~~~~~g~t~L~~A~~~~~~~~ 57 (240)
T 3eu9_A 6 DDYSTWDIVKA--TQYGIYERCRELVEAGYD--------------------------VRQPDKENVTLLHWAAINNRIDL 57 (240)
T ss_dssp SCGGGCCHHHH--HHTTCHHHHHHHHHTTCC--------------------------TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred ccccchHHHHH--HHcCChHHHHHHHHcCCC--------------------------cCCCCCCCCCHHHHHHHhCCHHH
Confidence 34589999999 999999999999985211 01235789999999999999999
Q ss_pred HHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhhccccccccCcccHHHHH
Q 040452 118 VKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIA 197 (316)
Q Consensus 118 ~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~ 197 (316)
+++|++.+++.....+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+ ++
T Consensus 58 v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~------------~~ 125 (240)
T 3eu9_A 58 VKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTS------------IV 125 (240)
T ss_dssp HHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH------------HH
T ss_pred HHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHH------------HH
Confidence 999999999988777777999999999999999999999999999999999999999999999999 99
Q ss_pred HHHhcCccccccccccccCCcHHHHHHhcCC-HHHHHHHHhcCCCCccccccC-CCchHHHHHHhcCCHHHHHHHHhcCC
Q 040452 198 ASLLNNKVIILKPLFVVIGWTPIHYAAYYDQ-YQLIHMLLKRGSNCFKYCCQR-SKMTALRLAAGQRHARTVKTILSLNP 275 (316)
Q Consensus 198 ~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~-~~~~~~Ll~~~~~~~~~~~~~-~~~t~l~~A~~~~~~~~v~~L~~~~~ 275 (316)
++|++.+. ..+..+..|.|||+.|+..++ .+++++|++.+++ . +..+. .|.||||+|+..|+.+++++|++.|+
T Consensus 126 ~~Ll~~~~--~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~-~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 201 (240)
T 3eu9_A 126 AYLIAKGQ--DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS-V-NLGDKYHKNTALHWAVLAGNTTVISLLLEAGA 201 (240)
T ss_dssp HHHHHTTC--CTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCC-T-TCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred HHHHhcCC--CccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCC-c-chhhccCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 99999988 678889999999999997666 8999999999998 5 45554 89999999999999999999999999
Q ss_pred C---CCCCCCChHHHHHHcCCHHHHHHHHhccccccCc
Q 040452 276 E---FNGEGDTPLPVAAKFGHFNIANVLIKREKLAQHE 310 (316)
Q Consensus 276 ~---~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~ 310 (316)
+ .+..|.|||++|+..|+.+++++|+++++.....
T Consensus 202 ~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~ 239 (240)
T 3eu9_A 202 NVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYD 239 (240)
T ss_dssp CTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC------
T ss_pred CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccCcC
Confidence 8 5678999999999999999999999999987654
No 22
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=5.9e-38 Score=252.08 Aligned_cols=217 Identities=17% Similarity=0.170 Sum_probs=192.0
Q ss_pred cCcchhhhhhhcccCcchHHHHHHHHhhchhhhhccChhhhhhHHHHHHhHhhhhCCCCCCCCcHHhHHHHcCCHHHHHH
Q 040452 41 KNRIRHINIISQKSKTGSTKFMEEILEICPSVLHKSMPKAILRSTLLRNLAILIYCPADDENNTALHEAVCHGNVQVVKI 120 (316)
Q Consensus 41 ~~t~L~~A~~~~~g~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~t~l~~A~~~~~~~~~~~ 120 (316)
|.||||+| +..|+.+++++|++..... ....+..|.||||+|+..|+.+++++
T Consensus 2 g~t~L~~A--~~~g~~~~v~~Ll~~~~~~-------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~ 54 (228)
T 2dzn_A 2 SNYPLHQA--CMENEFFKVQELLHSKPSL-------------------------LLQKDQDGRIPLHWSVSFQAHEITSF 54 (228)
T ss_dssp -CCHHHHH--HHTTCHHHHHHHHHHCGGG-------------------------TTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred CccHHHHH--HHhCCHHHHHHHHhcCccc-------------------------cccCCCCCCCHHHHHHHcCCHHHHHH
Confidence 78999999 9999999999999862210 11246789999999999999999999
Q ss_pred HHhCC--CCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCC--CCCccCCCCCCCHHHHHHHhhccccccccCcccHHHH
Q 040452 121 LTGQD--PDYPYSANNYGKTQLYLAAKGRYSEMVIELLENS--TSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVII 196 (316)
Q Consensus 121 Ll~~~--~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g--~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~ 196 (316)
|++.+ .++....+..|.||||+|+..|+.+++++|+++| ++++..+..|.||||+|+..++.+ +
T Consensus 55 Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~------------~ 122 (228)
T 2dzn_A 55 LLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE------------V 122 (228)
T ss_dssp HHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHH------------H
T ss_pred HHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHh------------H
Confidence 99998 5544336788999999999999999999999999 888999999999999999999999 9
Q ss_pred HHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcC-CCCccccccCCCchHHHHHHhcCCHHHHHHHH-hcC
Q 040452 197 AASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRG-SNCFKYCCQRSKMTALRLAAGQRHARTVKTIL-SLN 274 (316)
Q Consensus 197 ~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~-~~~ 274 (316)
+++|++.+. ..+..+..|.||||+|+..|+.+++++|++.+ .+ .+..+..|.||||+|+..|+.+++++|+ +.|
T Consensus 123 ~~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~g 198 (228)
T 2dzn_A 123 SQFLIENGA--SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA--VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG 198 (228)
T ss_dssp HHHHHHTTC--CSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCC--SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHcCC--CccccCCCCCCHHHHHHHcCCHHHHHHHHhcCccc--ccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC
Confidence 999999988 77888999999999999999999999999999 55 4788999999999999999999999999 889
Q ss_pred CC---CCCCCCChHHHHHHcCCHHHHHHHHhc
Q 040452 275 PE---FNGEGDTPLPVAAKFGHFNIANVLIKR 303 (316)
Q Consensus 275 ~~---~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 303 (316)
++ .+..|.||+++|... +++++|+++
T Consensus 199 a~~~~~~~~g~t~l~~A~~~---~~~~~l~~~ 227 (228)
T 2dzn_A 199 AEYDLVDNKGAKAEDVALNE---QVKKFFLNN 227 (228)
T ss_dssp CCSCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred CCCCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence 98 568899999999754 677887764
No 23
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=8.5e-37 Score=246.79 Aligned_cols=203 Identities=24% Similarity=0.338 Sum_probs=190.4
Q ss_pred CCCCCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHH
Q 040452 98 ADDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAA 177 (316)
Q Consensus 98 ~d~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~ 177 (316)
.+..|.||||+|+..|+.+++++|++.|.+++ ..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+
T Consensus 7 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 85 (237)
T 3b7b_A 7 EHQNKRSPLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAA 85 (237)
T ss_dssp SSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHH
T ss_pred ccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcC-ccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Confidence 46789999999999999999999999999865 67788999999999999999999999999999999999999999999
Q ss_pred HhhccccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHH
Q 040452 178 MHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRL 257 (316)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~ 257 (316)
..++.+ ++++|++.+. ...+..+..|.||||.|+..|+.+++++|++.|++ . +..+..|.||||+
T Consensus 86 ~~~~~~------------~~~~Ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~-~~~~~~g~t~L~~ 150 (237)
T 3b7b_A 86 KKGHYE------------VVQYLLSNGQ-MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD-I-NIRDNEENICLHW 150 (237)
T ss_dssp HTTCHH------------HHHHHHTTTC-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-T-TCCCTTSCCHHHH
T ss_pred HcCCHH------------HHHHHHhCCC-CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-C-CccCCCCCCHHHH
Confidence 999999 9999999984 36778889999999999999999999999999998 4 6788899999999
Q ss_pred HHhcCCHHHHHHHHhcCCC---CCCCCCChHHHHHHcCCHHHHHHHHhccccccCccccccC
Q 040452 258 AAGQRHARTVKTILSLNPE---FNGEGDTPLPVAAKFGHFNIANVLIKREKLAQHEDEELES 316 (316)
Q Consensus 258 A~~~~~~~~v~~L~~~~~~---~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~ 316 (316)
|+..|+.+++++|++.|++ .+..|.|||++|+..|+.+++++|+++|++++.++.+|.+
T Consensus 151 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t 212 (237)
T 3b7b_A 151 AAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGET 212 (237)
T ss_dssp HHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCC
T ss_pred HHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCC
Confidence 9999999999999999998 5678999999999999999999999999999999988863
No 24
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.4e-39 Score=263.90 Aligned_cols=235 Identities=16% Similarity=0.141 Sum_probs=172.1
Q ss_pred cccccCcchhhhhhhcccCcchHHHHHHHHhhchhhhhccChhhhhhHHHHHHhHhhhhCCCCCCCCcHHhHHHHcCCH-
Q 040452 37 TAQAKNRIRHINIISQKSKTGSTKFMEEILEICPSVLHKSMPKAILRSTLLRNLAILIYCPADDENNTALHEAVCHGNV- 115 (316)
Q Consensus 37 ~~~~~~t~L~~A~~~~~g~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~t~l~~A~~~~~~- 115 (316)
.+..+.++|+.| +..|+.++|++|++....... ...+.+ ...+..+.|||++|+..++.
T Consensus 7 kd~~~~~~L~~A--~~~G~~~~v~~LL~~~~~~~~----------~~~~~~--------~~~~~~~~t~L~~a~~~~~~~ 66 (269)
T 4b93_B 7 KDYREVEKLLRA--VADGDLEMVRYLLEWTEEDLE----------DAEDTV--------SAADPEFCHPLCQCPKCAPAQ 66 (269)
T ss_dssp CCCHHHHHHHHH--HHTTCHHHHHHHHTCC--------------------------------------------------
T ss_pred cCccchhHHHHH--HHcCCHHHHHHHHHCCCcccc----------cccccc--------cccCccCCCHHHHHHHhCCHH
Confidence 344577999999 999999999999986221100 000001 12457789999999988775
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhhccccccccCcccHHH
Q 040452 116 QVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVI 195 (316)
Q Consensus 116 ~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~ 195 (316)
.++++|+..|.+++ ..+..|.||||+|+..|+.+++++|++.|++++..+..|.||+++|+..++.+
T Consensus 67 ~~v~~Ll~~Gadvn-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~------------ 133 (269)
T 4b93_B 67 KRLAKVPASGLGVN-VTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQ------------ 133 (269)
T ss_dssp --------CCCCTT-CCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHH------------
T ss_pred HHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHH------------
Confidence 48899999999975 78889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCC
Q 040452 196 IAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275 (316)
Q Consensus 196 ~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~ 275 (316)
++++|++.+. .++..|..|.||||+|+..|+.+++++|++.|++ + +..+..|.||||+|+..|+.++|++|++.|+
T Consensus 134 ~~~~Ll~~g~--~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad-v-n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Ga 209 (269)
T 4b93_B 134 VVKCLLDSNA--KPNKKDLSGNTPLIYACSGGHHELVALLLQHGAS-I-NASNNKGNTALHEAVIEKHVFVVELLLLHGA 209 (269)
T ss_dssp HHHHHHHTTC--CSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCC-T-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHCCC--CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-C-CccccCCCcHHHHHHHcCCHHHHHHHHHCCC
Confidence 9999999998 7788899999999999999999999999999998 5 7889999999999999999999999999999
Q ss_pred C---CCCCCCChHHHHHHcCC-HHHHHHHHhcccccc
Q 040452 276 E---FNGEGDTPLPVAAKFGH-FNIANVLIKREKLAQ 308 (316)
Q Consensus 276 ~---~~~~g~t~l~~A~~~~~-~~~~~~Ll~~g~~~~ 308 (316)
+ .|..|+|||++|+++++ .+++++|.+.++..+
T Consensus 210 d~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~~~ 246 (269)
T 4b93_B 210 SVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVASLD 246 (269)
T ss_dssp CSCCCCTTSCCSGGGSCTTCHHHHHTTC---------
T ss_pred CCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchhhh
Confidence 8 67889999999998875 355555556655443
No 25
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.3e-37 Score=258.04 Aligned_cols=215 Identities=20% Similarity=0.165 Sum_probs=177.6
Q ss_pred ccccccCcchhhhhhhcccCcchHHHHHHHHhhchhhhhccChhhhhhHHHHHHhHhhhhCCCCCCCCcHHhHHHHcCCH
Q 040452 36 LTAQAKNRIRHINIISQKSKTGSTKFMEEILEICPSVLHKSMPKAILRSTLLRNLAILIYCPADDENNTALHEAVCHGNV 115 (316)
Q Consensus 36 ~~~~~~~t~L~~A~~~~~g~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~t~l~~A~~~~~~ 115 (316)
..+..|.||||+| +..|+.+++++|++..... +.+. ..+..|.||||+|+..|+.
T Consensus 4 ~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~g~~~---------------~~~~--------~~~~~g~t~L~~A~~~g~~ 58 (282)
T 1oy3_D 4 YVTEDGDTALHLA--VIHQHEPFLDFLLGFSAGH---------------EYLD--------LQNDLGQTALHLAAILGEA 58 (282)
T ss_dssp CCCTTCCCHHHHH--HHTTCHHHHHHHHHHHTTS---------------GGGG--------CCCTTSCCHHHHHHHHTCH
T ss_pred ccCCCCCcHHHHH--HHcCCHHHHHHHHhcCCCc---------------cccc--------ccCCCCCCHHHHHHHcCCH
Confidence 3445699999999 9999999999999973321 1111 3467899999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCC----------------------------------
Q 040452 116 QVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTS---------------------------------- 161 (316)
Q Consensus 116 ~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~---------------------------------- 161 (316)
+++++|++.|+++. ..+..|.||||+|+..|+.+++++|++.|++
T Consensus 59 ~~v~~Ll~~ga~~~-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (282)
T 1oy3_D 59 STVEKLYAAGAGVL-VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPE 137 (282)
T ss_dssp HHHHHHHHTTCCSS-CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------
T ss_pred HHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccc
Confidence 99999999999965 7788999999999999999999999998765
Q ss_pred -------------CccCCCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCccccccccccc-cCCcHHHHHHhcC
Q 040452 162 -------------VSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVV-IGWTPIHYAAYYD 227 (316)
Q Consensus 162 -------------~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~~t~l~~A~~~~ 227 (316)
++..+..|.||||+|+..|+.+ ++++|++.+. ..+..+. .|.||||+|+..|
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~------------~v~~Ll~~g~--~~~~~~~~~g~tpL~~A~~~~ 203 (282)
T 1oy3_D 138 NEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAE------------MVRLLRDAGA--DLNKPEPTCGRTPLHLAVEAQ 203 (282)
T ss_dssp ------CCCGGGGTTCCCTTSCCHHHHHHHTTCHH------------HHHHHHHHTC--CTTCCCTTTCCCHHHHHHHTT
T ss_pred hhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHH------------HHHHHHHcCC--CCCCCCCCCCcCHHHHHHHcC
Confidence 5667889999999999999999 9999999998 5666664 5999999999999
Q ss_pred CHHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCCC---CCCCCCChHHHHHHcC
Q 040452 228 QYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPE---FNGEGDTPLPVAAKFG 292 (316)
Q Consensus 228 ~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~---~~~~g~t~l~~A~~~~ 292 (316)
+.+++++|+++|++ . +..+..|.||||+|+..|+.+++++|+++|++ .+..|.|||++|....
T Consensus 204 ~~~~v~~Ll~~gad-~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 204 AASVLELLLKAGAD-P-TARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp CHHHHHHHHHTTCC-T-TCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC--------------
T ss_pred CHHHHHHHHHcCCC-C-cccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCcc
Confidence 99999999999998 5 78899999999999999999999999999999 6688999999998664
No 26
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=5.8e-37 Score=251.37 Aligned_cols=197 Identities=21% Similarity=0.151 Sum_probs=155.2
Q ss_pred CCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhh
Q 040452 101 ENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHF 180 (316)
Q Consensus 101 ~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~ 180 (316)
+|+||||+|+..|+.+++++|++.|.+++ ..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 80 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVN-IITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSG 80 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence 47788888888888888888888877754 66777888888888888888888888888888888888888888888888
Q ss_pred ccccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHh
Q 040452 181 YYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAG 260 (316)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~ 260 (316)
+.+ ++++|++.+. ..+ .+..|.||||.|+..|+.+++++|++.|++ . +..+..|.||||+|+.
T Consensus 81 ~~~------------~v~~Ll~~g~--~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~-~~~~~~g~t~L~~A~~ 143 (261)
T 2xai_A 81 SWD------------CVNLLLQHGA--SVQ-PESDLASPIHEAARRGHVECVNSLIAYGGN-I-DHKISHLGTPLYLACE 143 (261)
T ss_dssp CHH------------HHHHHHHTTC--CSS-CSCTTCCHHHHHHHTTCHHHHHHHHHTTCC-T-TCCBTTTBCHHHHHHH
T ss_pred CHH------------HHHHHHHCCC--CCC-CCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-C-CcCCCCCCCHHHHHHH
Confidence 888 8888888877 222 244578888888888888888888888877 4 6677778888888888
Q ss_pred cCCHHHHHHHHhcCCC--CCCCCCChHHHHHHcCCHHHHHHHHhccccccCcccccc
Q 040452 261 QRHARTVKTILSLNPE--FNGEGDTPLPVAAKFGHFNIANVLIKREKLAQHEDEELE 315 (316)
Q Consensus 261 ~~~~~~v~~L~~~~~~--~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~ 315 (316)
.|+.+++++|++.|++ .+..|.||||+|+..|+.+++++|+++|++++.+|.+|+
T Consensus 144 ~~~~~~v~~Ll~~g~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~ 200 (261)
T 2xai_A 144 NQQRACVKKLLESGADVNQGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGK 200 (261)
T ss_dssp TTCHHHHHHHHHHTCCTTCCBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred hCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence 8888888888888877 345677888888888888888888888888888877765
No 27
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=3.8e-39 Score=267.50 Aligned_cols=241 Identities=15% Similarity=0.140 Sum_probs=206.7
Q ss_pred HHcCCCCcccccccccccccccccccccCcchhhhhhhcccCcchHHHHHHHHhhchhhhhccChhhhhhHHHHHHhHhh
Q 040452 14 AAEGHADEPFKKDTRSNEIRGLLTAQAKNRIRHINIISQKSKTGSTKFMEEILEICPSVLHKSMPKAILRSTLLRNLAIL 93 (316)
Q Consensus 14 ~~~g~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~A~~~~~g~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (316)
+...+.+ .+..++...+++ ..+..|.||||+| +..|+.+++++|++.....
T Consensus 7 i~~~~~~-~v~~lL~~~~~~--~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~g~~~------------------------ 57 (285)
T 3kea_A 7 INTWKSK-QLKSFLSSKDTF--KADVHGHSASYYA--IADNNVRLVCTLLNAGALK------------------------ 57 (285)
T ss_dssp GGGCCHH-HHHHHHHSTTTT--CCCTTSCCHHHHH--HHTTCHHHHHHHHHTTGGG------------------------
T ss_pred HHhcCHH-HHHHHHHhCCCC--ccCCCCCCHHHHH--HHcCCHHHHHHHHhCCCCC------------------------
Confidence 3455555 444555436666 6667799999999 9999999999999862110
Q ss_pred hhCCCCCCCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCC-CCH
Q 040452 94 IYCPADDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNG-KTA 172 (316)
Q Consensus 94 ~~~~~d~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~-~t~ 172 (316)
...+|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..|+.+++++|+++|++++..+..| .||
T Consensus 58 ----~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~ 132 (285)
T 3kea_A 58 ----NLLENEFPLHQAATLEDTKIVKILLFSGLDDS-QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTS 132 (285)
T ss_dssp ----SCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSH
T ss_pred ----CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCH
Confidence 01258999999999999999999999999975 678899999999999999999999999999999999999 799
Q ss_pred HHHHHHhhccccccccCcccHHHHHHHHhcCccccccccccc-cCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCC
Q 040452 173 LHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVV-IGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSK 251 (316)
Q Consensus 173 L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~ 251 (316)
||+|+..++.+ ++++|++.+. .. .+. .|.||||+|+..|+.+++++|+++|++ . +..+..|
T Consensus 133 L~~A~~~~~~~------------~v~~Ll~~g~--~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad-~-n~~~~~g 194 (285)
T 3kea_A 133 FYHAVMLNDVS------------IVSYFLSEIP--ST--FDLAILLSCIHITIKNGHVDMMILLLDYMTS-T-NTNNSLL 194 (285)
T ss_dssp HHHHHHTTCHH------------HHHHHHTTSC--TT--CCCSTHHHHHHHHHHTTCHHHHHHHHHHHHH-T-CTTCCCB
T ss_pred HHHHHHcCCHH------------HHHHHHhCCC--cc--ccccCCccHHHHHHHcChHHHHHHHHHcCCC-C-CcccCCC
Confidence 99999999999 9999999988 22 232 799999999999999999999999988 4 7788899
Q ss_pred chH-HHHHHhcCCHHHHHHHHhcCCCCCCCCCChHHHHHHcCCHHHHHHHHhccccccCc
Q 040452 252 MTA-LRLAAGQRHARTVKTILSLNPEFNGEGDTPLPVAAKFGHFNIANVLIKREKLAQHE 310 (316)
Q Consensus 252 ~t~-l~~A~~~~~~~~v~~L~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~ 310 (316)
.|| ||+|+..|+.+++++|+++|++.+... +.|+..|+.+++++|+++|+++...
T Consensus 195 ~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~----~~a~~~~~~~iv~~Ll~~g~~~~~~ 250 (285)
T 3kea_A 195 FIPDIKLAIDNKDIEMLQALFKYDINIYSAN----LENVLLDDAEIAKMIIEKHVEYKSD 250 (285)
T ss_dssp CCTTHHHHHHHTCHHHHHHHTTSCBCSTTTT----GGGGTTTCHHHHHHHHHHHHHHTTC
T ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCCCCCC----hhhhhcCCHHHHHHHHHcCCCCCCc
Confidence 997 999999999999999999999866433 3667899999999999999987654
No 28
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=6.4e-37 Score=245.24 Aligned_cols=194 Identities=24% Similarity=0.216 Sum_probs=182.1
Q ss_pred CCCCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCC-CCccCCCCCCCHHHHHH
Q 040452 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENST-SVSYEGPNGKTALHAAA 177 (316)
Q Consensus 99 d~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~-~~~~~~~~~~t~L~~a~ 177 (316)
|..|.||||+|+..|+.+++++|++.+.++. ..+..|.||||+|+..|+.+++++|++.+. +++..+..|.||||+|+
T Consensus 22 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~ 100 (223)
T 2f8y_A 22 DRTGETALHLAARYSRSDAAKRLLEASADAN-IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA 100 (223)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHH
T ss_pred CCCCCchHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHH
Confidence 5789999999999999999999999999865 678889999999999999999999999986 88999999999999999
Q ss_pred HhhccccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHH
Q 040452 178 MHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRL 257 (316)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~ 257 (316)
..++.+ ++++|++.+. ..+..+..|.||||+|+..|+.+++++|+++|++ . +..+..|.||||+
T Consensus 101 ~~~~~~------------~~~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~-~~~~~~g~t~L~~ 164 (223)
T 2f8y_A 101 RLAVEG------------MLEDLINSHA--DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-K-DMQNNREETPLFL 164 (223)
T ss_dssp HHTCHH------------HHHHHHHTTC--CTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-T-TCCCTTCCCHHHH
T ss_pred HhCcHH------------HHHHHHHcCC--CCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-C-CCcCCCCcCHHHH
Confidence 999999 9999999988 6788899999999999999999999999999988 4 7788999999999
Q ss_pred HHhcCCHHHHHHHHhcCCC---CCCCCCChHHHHHHcCCHHHHHHHHhccccccC
Q 040452 258 AAGQRHARTVKTILSLNPE---FNGEGDTPLPVAAKFGHFNIANVLIKREKLAQH 309 (316)
Q Consensus 258 A~~~~~~~~v~~L~~~~~~---~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~ 309 (316)
|+..|+.+++++|++.|++ .+..|.||+++|+..++.+++++|+++|+....
T Consensus 165 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~~ 219 (223)
T 2f8y_A 165 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSP 219 (223)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSCC
T ss_pred HHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCccc
Confidence 9999999999999999998 567899999999999999999999999997654
No 29
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=8.6e-37 Score=260.80 Aligned_cols=254 Identities=20% Similarity=0.114 Sum_probs=216.9
Q ss_pred CCCCCchHHHHHHcCCCCcccccccccccccccccccccCcchhhhhhhcccCcchHHHHHHHHhhchhhhhccChhhhh
Q 040452 3 PVSTHPNLFKAAAEGHADEPFKKDTRSNEIRGLLTAQAKNRIRHINIISQKSKTGSTKFMEEILEICPSVLHKSMPKAIL 82 (316)
Q Consensus 3 ~~~~~~~l~~A~~~g~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~A~~~~~g~~~i~~~L~~~~~~~~~~~~~~~~~~~~ 82 (316)
...+.||||.||..|+.+ ++++|++ .+.+....+..|.||||+| +..|+.+++++|++.....
T Consensus 55 d~~g~t~L~~A~~~g~~~-~v~~Ll~-~g~~~~~~~~~g~t~L~~A--~~~g~~~iv~~Ll~~g~~~------------- 117 (351)
T 3utm_A 55 DGRKSTPLHLAAGYNRVR-IVQLLLQ-HGADVHAKDKGGLVPLHNA--CSYGHYEVTELLLKHGACV------------- 117 (351)
T ss_dssp STTCCCHHHHHHHTTCHH-HHHHHHH-TTCCTTCCCTTCCCHHHHH--HHTTCHHHHHHHHHTTCCT-------------
T ss_pred CCCCCCHHHHHHHcCCHH-HHHHHHH-cCCCCCccCCCCCcHHHHH--HHCCCHHHHHHHHHCCCCC-------------
Confidence 356789999999999999 9999999 7777556777899999999 9999999999999862110
Q ss_pred hHHHHHHhHhhhhCCCCCCCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHH-------------------
Q 040452 83 RSTLLRNLAILIYCPADDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLA------------------- 143 (316)
Q Consensus 83 ~~~~~~~~~~l~~~~~d~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a------------------- 143 (316)
...+..|.||||+|+..++.+++++|++.|.+.. ..+..|.+|++.+
T Consensus 118 -------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~ 183 (351)
T 3utm_A 118 -------------NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT-LVNCHGKSAVDMAPTPELRERLTYEFKGHSLL 183 (351)
T ss_dssp -------------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred -------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-cccCCCCcchHHHhhhhhHHHHHhhhcccHHH
Confidence 1235779999999999999999999999999865 6778888887664
Q ss_pred --HhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhhc---cccccccCcccHHHHHHHHhcCccccccccccccCCc
Q 040452 144 --AKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFY---YGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWT 218 (316)
Q Consensus 144 --~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~---~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t 218 (316)
+..+..+.+..++..+......+..|.||||+|+..++ .+ ++++|++.+. ..+..+..|.|
T Consensus 184 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~------------~~~~Ll~~g~--~~~~~~~~g~t 249 (351)
T 3utm_A 184 QAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQ------------VAELLLRKGA--NVNEKNKDFMT 249 (351)
T ss_dssp HHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHH------------HHHHHHHTTC--CTTCCCTTCCC
T ss_pred HHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHH------------HHHHHHHcCC--CcCCcCCCCCC
Confidence 55677777888887776666677889999999999844 55 9999999998 67888999999
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCCC---CCCCCCChHHHHHHcCCHH
Q 040452 219 PIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPE---FNGEGDTPLPVAAKFGHFN 295 (316)
Q Consensus 219 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~---~~~~g~t~l~~A~~~~~~~ 295 (316)
|||+|+..|+.+++++|+++|++ . +..+..|.||||+|+..|+.+++++|+++|++ .+..|.||+++| ..+
T Consensus 250 ~L~~A~~~g~~~~v~~Ll~~ga~-~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a----~~~ 323 (351)
T 3utm_A 250 PLHVAAERAHNDVMEVLHKHGAK-M-NALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG----NEA 323 (351)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCC-T-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS----CHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCC-C-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhh----hHH
Confidence 99999999999999999999998 5 78899999999999999999999999999998 678899999997 678
Q ss_pred HHHHHHhccccc
Q 040452 296 IANVLIKREKLA 307 (316)
Q Consensus 296 ~~~~Ll~~g~~~ 307 (316)
++++|.+.+...
T Consensus 324 ~~~~l~~~~~~~ 335 (351)
T 3utm_A 324 VQQILSESTPMR 335 (351)
T ss_dssp HHHHHHHC----
T ss_pred HHHHHHhccccc
Confidence 999998886653
No 30
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.6e-36 Score=243.74 Aligned_cols=201 Identities=19% Similarity=0.167 Sum_probs=185.0
Q ss_pred CCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCC--CCCcc-CCCCCCCHHHHHHH
Q 040452 102 NNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENS--TSVSY-EGPNGKTALHAAAM 178 (316)
Q Consensus 102 ~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g--~~~~~-~~~~~~t~L~~a~~ 178 (316)
|.||||+|+..|+.+++++|++.++......+..|.||||+|+..|+.+++++|++.| .+++. .+..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 6899999999999999999999998877678899999999999999999999999999 55555 78899999999999
Q ss_pred hhccccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHH
Q 040452 179 HFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLA 258 (316)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A 258 (316)
.++.+ ++++|++.+.....+..+..|.||||.|+..|+.+++++|+++|++ . +..+..|.||||+|
T Consensus 82 ~~~~~------------~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~-~~~~~~g~t~L~~A 147 (228)
T 2dzn_A 82 VGNLE------------VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-V-RIKDKFNQIPLHRA 147 (228)
T ss_dssp HCCHH------------HHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-S-CCCCTTSCCHHHHH
T ss_pred cCCHH------------HHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC-c-cccCCCCCCHHHHH
Confidence 99999 9999999983236788889999999999999999999999999998 4 77889999999999
Q ss_pred HhcCCHHHHHHHHhcC-CC---CCCCCCChHHHHHHcCCHHHHHHHH-hccccccCccccccC
Q 040452 259 AGQRHARTVKTILSLN-PE---FNGEGDTPLPVAAKFGHFNIANVLI-KREKLAQHEDEELES 316 (316)
Q Consensus 259 ~~~~~~~~v~~L~~~~-~~---~~~~g~t~l~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~~~~ 316 (316)
+..|+.+++++|++.| ++ .+..|.|||++|+..|+.+++++|+ ++|++++..+.+|.+
T Consensus 148 ~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t 210 (228)
T 2dzn_A 148 ASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAK 210 (228)
T ss_dssp HHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCB
T ss_pred HHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCc
Confidence 9999999999999999 65 6788999999999999999999999 999999999988763
No 31
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=3.3e-36 Score=243.87 Aligned_cols=204 Identities=23% Similarity=0.233 Sum_probs=184.6
Q ss_pred CCCCCCCcHHhHHHHcCCHHHHHHHHh----CCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCH
Q 040452 97 PADDENNTALHEAVCHGNVQVVKILTG----QDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTA 172 (316)
Q Consensus 97 ~~d~~~~t~l~~A~~~~~~~~~~~Ll~----~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~ 172 (316)
..|..|.||||+|+..|+.+++++|++ .+.+++ ..+..|.||||+|+..|+.+++++|++.|++++..+..|.||
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 82 (241)
T 1k1a_A 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA 82 (241)
T ss_dssp ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-cccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence 357899999999999999999999997 566654 778889999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccccccCcccHHHHHHHHhcCccc--cccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccc-C
Q 040452 173 LHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVI--ILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQ-R 249 (316)
Q Consensus 173 L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~--~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~-~ 249 (316)
||+|+..++.+ ++++|++.+.. ...+..+..|.||||.|+..|+.+++++|++.|++ . +..+ .
T Consensus 83 l~~A~~~~~~~------------~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~-~~~~~~ 148 (241)
T 1k1a_A 83 AHLACEHRSPT------------CLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD-I-DAVDIK 148 (241)
T ss_dssp HHHHHHTTCHH------------HHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-T-TCCCTT
T ss_pred HHHHHHcCCHH------------HHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC-c-cccccc
Confidence 99999999999 99999988751 14566788999999999999999999999999998 5 4455 7
Q ss_pred CCchHHHHHHhcCCHHHHHHHHhcCCC---CCCCCCChHHHHHHcCCHHHHHHHHhccccccCcccccc
Q 040452 250 SKMTALRLAAGQRHARTVKTILSLNPE---FNGEGDTPLPVAAKFGHFNIANVLIKREKLAQHEDEELE 315 (316)
Q Consensus 250 ~~~t~l~~A~~~~~~~~v~~L~~~~~~---~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~ 315 (316)
.|.||||+|+..|+.+++++|++.|++ .+..|.||||+|+..|+.+++++|+++|++++..+.+|.
T Consensus 149 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~ 217 (241)
T 1k1a_A 149 SGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHND 217 (241)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCC
Confidence 899999999999999999999999998 467899999999999999999999999999999998875
No 32
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.6e-36 Score=242.98 Aligned_cols=215 Identities=22% Similarity=0.139 Sum_probs=190.6
Q ss_pred CCCCcccccccccccccccc-cccccCcchhhhhhhcccCcchHHHHHHHHhhchhhhhccChhhhhhHHHHHHhHhhhh
Q 040452 17 GHADEPFKKDTRSNEIRGLL-TAQAKNRIRHINIISQKSKTGSTKFMEEILEICPSVLHKSMPKAILRSTLLRNLAILIY 95 (316)
Q Consensus 17 g~~~~~~~~ll~~~~~~~~~-~~~~~~t~L~~A~~~~~g~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (316)
|+++ ++++|++ .+.+... .+..|.||||+| +..|+.+++++|++.....
T Consensus 2 g~~~-~i~~Ll~-~g~~~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~g~~~-------------------------- 51 (223)
T 2f8y_A 2 DAPA-VISDFIY-QGASLHNQTDRTGETALHLA--ARYSRSDAAKRLLEASADA-------------------------- 51 (223)
T ss_dssp ---C-CEETTEE-TTCCTTCCCTTTCCCHHHHH--HHTTCHHHHHHHHHTTCCT--------------------------
T ss_pred CcHH-HHHHHHH-cCCCcccccCCCCCchHHHH--HHcCCHHHHHHHHHcCCCC--------------------------
Confidence 7889 9999999 6666333 356799999999 9999999999999862110
Q ss_pred CCCCCCCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHH
Q 040452 96 CPADDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHA 175 (316)
Q Consensus 96 ~~~d~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~ 175 (316)
...+..|.||||+|+..++.+++++|++.++......+..|.||||+|+..++.+++++|++.|++++..+..|.||||+
T Consensus 52 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~ 131 (223)
T 2f8y_A 52 NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHW 131 (223)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHH
T ss_pred CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHH
Confidence 12367899999999999999999999999885455788899999999999999999999999999999999999999999
Q ss_pred HHHhhccccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHH
Q 040452 176 AAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTAL 255 (316)
Q Consensus 176 a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l 255 (316)
|+..++.+ ++++|++.+. ..+..+..|.||||+|+..|+.+++++|+++|++ . +..+..|.||+
T Consensus 132 A~~~~~~~------------~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~-~~~~~~g~t~l 195 (223)
T 2f8y_A 132 AAAVNNVD------------AAVVLLKNGA--NKDMQNNREETPLFLAAREGSYETAKVLLDHFAN-R-DITDHMDRLPR 195 (223)
T ss_dssp HHHTTCHH------------HHHHHHHTTC--CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-T-TCCCTTCCCHH
T ss_pred HHHcCCHH------------HHHHHHHcCC--CCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-C-ccccccCCCHH
Confidence 99999999 9999999988 7788899999999999999999999999999998 4 77889999999
Q ss_pred HHHHhcCCHHHHHHHHhcCCCC
Q 040452 256 RLAAGQRHARTVKTILSLNPEF 277 (316)
Q Consensus 256 ~~A~~~~~~~~v~~L~~~~~~~ 277 (316)
++|+..++.+++++|+++|+..
T Consensus 196 ~~A~~~~~~~i~~~L~~~g~~~ 217 (223)
T 2f8y_A 196 DIAQERMHHDIVRLLDEYNLVR 217 (223)
T ss_dssp HHHHHTTCHHHHHHHHHTTCSS
T ss_pred HHHHHhcchHHHHHHHHcCCCc
Confidence 9999999999999999999863
No 33
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=4.3e-37 Score=248.76 Aligned_cols=229 Identities=20% Similarity=0.134 Sum_probs=200.2
Q ss_pred CCCCCchHHHHHHcCCCCcccccccccccccccccccccCcchhhhhhhcccCcchHHHHHHHHhhchhhhhccChhhhh
Q 040452 3 PVSTHPNLFKAAAEGHADEPFKKDTRSNEIRGLLTAQAKNRIRHINIISQKSKTGSTKFMEEILEICPSVLHKSMPKAIL 82 (316)
Q Consensus 3 ~~~~~~~l~~A~~~g~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~A~~~~~g~~~i~~~L~~~~~~~~~~~~~~~~~~~~ 82 (316)
.....++|+.||+.|+++ ++++|++ .+.+....+..|.||||+| +..|+.+++++|++.....
T Consensus 6 d~~~~~~l~~A~~~g~~~-~~~~Ll~-~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~~~~~------------- 68 (240)
T 3eu9_A 6 DDYSTWDIVKATQYGIYE-RCRELVE-AGYDVRQPDKENVTLLHWA--AINNRIDLVKYYISKGAIV------------- 68 (240)
T ss_dssp SCGGGCCHHHHHHTTCHH-HHHHHHH-TTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHTTCCT-------------
T ss_pred ccccchHHHHHHHcCChH-HHHHHHH-cCCCcCCCCCCCCCHHHHH--HHhCCHHHHHHHHHcCCcc-------------
Confidence 345678999999999999 9999999 6676556667799999999 9999999999999862211
Q ss_pred hHHHHHHhHhhhhCCCCCCCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCC
Q 040452 83 RSTLLRNLAILIYCPADDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSV 162 (316)
Q Consensus 83 ~~~~~~~~~~l~~~~~d~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~ 162 (316)
....+..|.||||+|+..++.+++++|++.+.++. ..+..|.||||+|+..|+.+++++|+++|+++
T Consensus 69 ------------~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~ 135 (240)
T 3eu9_A 69 ------------DQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS-LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV 135 (240)
T ss_dssp ------------TCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred ------------hhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc
Confidence 01123558999999999999999999999998865 67888999999999999999999999999999
Q ss_pred ccCCCCCCCHHHHHHHhhc-cccccccCcccHHHHHHHHhcCccccccccccc-cCCcHHHHHHhcCCHHHHHHHHhcCC
Q 040452 163 SYEGPNGKTALHAAAMHFY-YGKCLVCSSENWVIIAASLLNNKVIILKPLFVV-IGWTPIHYAAYYDQYQLIHMLLKRGS 240 (316)
Q Consensus 163 ~~~~~~~~t~L~~a~~~~~-~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~~t~l~~A~~~~~~~~~~~Ll~~~~ 240 (316)
+..+..|.||||+|+..++ .+ ++++|+..+. ..+..+. .|.||||.|+..|+.+++++|+++|+
T Consensus 136 ~~~~~~g~t~l~~a~~~~~~~~------------~~~~L~~~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 201 (240)
T 3eu9_A 136 DMMDQNGMTPLMWAAYRTHSVD------------PTRLLLTFNV--SVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGA 201 (240)
T ss_dssp TCCCTTSCCHHHHHHHHCCSST------------THHHHHHTTC--CTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred cccCCCCCcHHHHHHHhCChHH------------HHHHHHhcCC--CcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 9999999999999997776 67 9999999998 5666665 89999999999999999999999998
Q ss_pred CCccccccCCCchHHHHHHhcCCHHHHHHHHhcCCCC
Q 040452 241 NCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPEF 277 (316)
Q Consensus 241 ~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~ 277 (316)
+ . +..+..|.|||++|++.|+.+++++|++.+...
T Consensus 202 ~-~-~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 202 N-V-DAQNIKGESALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp C-T-TCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred C-C-CCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 8 4 788999999999999999999999999998763
No 34
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.6e-36 Score=251.68 Aligned_cols=208 Identities=16% Similarity=0.064 Sum_probs=185.4
Q ss_pred hHHHHHHhHhhhhC---CCCCCCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCC
Q 040452 83 RSTLLRNLAILIYC---PADDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENS 159 (316)
Q Consensus 83 ~~~~~~~~~~l~~~---~~d~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g 159 (316)
..++.+ +|.+. ..|..|.||||+|+..|+.+++++|++.|.+++.. .|.||||+|+..|+.+++++|+++|
T Consensus 12 ~~~v~~---lL~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~g 85 (285)
T 3kea_A 12 SKQLKS---FLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL---ENEFPLHQAATLEDTKIVKILLFSG 85 (285)
T ss_dssp HHHHHH---HHHSTTTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC---TTCCHHHHHTTSSSCHHHHHHHHTT
T ss_pred HHHHHH---HHHhCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 344444 44443 34678999999999999999999999999886533 5899999999999999999999999
Q ss_pred CCCccCCCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCccccccccccccC-CcHHHHHHhcCCHHHHHHHHhc
Q 040452 160 TSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIG-WTPIHYAAYYDQYQLIHMLLKR 238 (316)
Q Consensus 160 ~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~-~t~l~~A~~~~~~~~~~~Ll~~ 238 (316)
++++.++..|.||||+|+..|+.+ ++++|++.+. ..+..+..| .||||+|+..|+.+++++|+++
T Consensus 86 a~~~~~d~~g~t~L~~A~~~g~~~------------~v~~Ll~~ga--~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~ 151 (285)
T 3kea_A 86 LDDSQFDDKGNTALYYAVDSGNMQ------------TVKLFVKKNW--RLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE 151 (285)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHH------------HHHHHHHHCG--GGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTT
T ss_pred CCCCCcCCCCCcHHHHHHHcCCHH------------HHHHHHhcCC--CCCccCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 999999999999999999999999 9999999998 678888888 7999999999999999999999
Q ss_pred CCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCCC---CCCCCCCh-HHHHHHcCCHHHHHHHHhccccccCcccc
Q 040452 239 GSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPE---FNGEGDTP-LPVAAKFGHFNIANVLIKREKLAQHEDEE 313 (316)
Q Consensus 239 ~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~---~~~~g~t~-l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~ 313 (316)
+++ . .....|.||||+|+..|+.+++++|++.|++ .+..|.|| |++|+..|+.+++++|+++|++++..+..
T Consensus 152 g~~-~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~ 227 (285)
T 3kea_A 152 IPS-T--FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANLE 227 (285)
T ss_dssp SCT-T--CCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTGG
T ss_pred CCc-c--ccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCChh
Confidence 987 3 1223899999999999999999999999888 56789997 99999999999999999999999988753
No 35
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.2e-35 Score=252.58 Aligned_cols=249 Identities=21% Similarity=0.208 Sum_probs=207.7
Q ss_pred cccCcchhhhhhhcccCcchHHHHHHHHhh--------chhhhhccChhhhhhHHHHHHhHhhhhCCC-----CCCCCcH
Q 040452 39 QAKNRIRHINIISQKSKTGSTKFMEEILEI--------CPSVLHKSMPKAILRSTLLRNLAILIYCPA-----DDENNTA 105 (316)
Q Consensus 39 ~~~~t~L~~A~~~~~g~~~i~~~L~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----d~~~~t~ 105 (316)
..|.|+|+.| +..|+.++|++|++.+.. +.++++.+.. .++.++++ +|++++. +..+.++
T Consensus 23 ~~~~t~L~~A--v~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~--~g~~~iv~---~Ll~~ga~~~~~~~~~~~~ 95 (337)
T 4g8k_A 23 VEDNHLLIKA--VQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQ--MSREDIVE---LLLRHGADPVLRKKNGATP 95 (337)
T ss_dssp HHHHHHHHHH--HHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHH--TTCHHHHH---HHHHTTCCTTCCCTTCCCH
T ss_pred CCCChHHHHH--HHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHH--cCCHHHHH---HHHHcCCchhhhccCCCch
Confidence 3588999999 999999999999998321 1234444433 66777777 7777644 4566777
Q ss_pred HhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccC----------CCCCCCHHHH
Q 040452 106 LHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYE----------GPNGKTALHA 175 (316)
Q Consensus 106 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~----------~~~~~t~L~~ 175 (316)
++.++..+...++..++..+.+++ ..+..|.|||++|+..|+.+++++|+++|++++.. +..|.||||+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~ 174 (337)
T 4g8k_A 96 FILAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD 174 (337)
T ss_dssp HHHHHHHTCHHHHHHHHTTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHH
T ss_pred hHHHHhcccchhhHHhhhccchhh-hhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHH
Confidence 777777777777777777777754 67888999999999999999999999999988653 4468999999
Q ss_pred HHHhhccccccccCcccHHHHHHHHhc-CccccccccccccCCcHHHHHHhcCC----HHHHHHHHhcCCCCccccccCC
Q 040452 176 AAMHFYYGKCLVCSSENWVIIAASLLN-NKVIILKPLFVVIGWTPIHYAAYYDQ----YQLIHMLLKRGSNCFKYCCQRS 250 (316)
Q Consensus 176 a~~~~~~~~~~~~~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~t~l~~A~~~~~----~~~~~~Ll~~~~~~~~~~~~~~ 250 (316)
|+..|+.+ ++++|++ .+. .++..+..|.|+++.++..+. ..++++|+++|++ . +..+..
T Consensus 175 A~~~g~~~------------~v~~LL~~~ga--d~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad-~-n~~d~~ 238 (337)
T 4g8k_A 175 AAEKGHVE------------VLKILLDEMGA--DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-V-NVRGER 238 (337)
T ss_dssp HHHHTCHH------------HHHHHHHHSCC--CTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC-T-TCCCGG
T ss_pred HHHCCCHH------------HHHHHHhccCC--CcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCC-C-CCcCCC
Confidence 99999999 9999996 466 678889999999998886544 4688999999998 5 778999
Q ss_pred CchHHHHHHhcCCHHHHHHHHhc-CCC---CCCCCCChHHHHHHcCCHHHHHHHHhccccccCcc
Q 040452 251 KMTALRLAAGQRHARTVKTILSL-NPE---FNGEGDTPLPVAAKFGHFNIANVLIKREKLAQHED 311 (316)
Q Consensus 251 ~~t~l~~A~~~~~~~~v~~L~~~-~~~---~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~ 311 (316)
|.||||+|+..|+.+++++|+.. +++ .+..|.||||+|+..|+.++|++|+++|++++..+
T Consensus 239 g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~~ 303 (337)
T 4g8k_A 239 GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 303 (337)
T ss_dssp GCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTCC
T ss_pred CCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence 99999999999999999999975 555 66889999999999999999999999999998654
No 36
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=6.7e-37 Score=247.29 Aligned_cols=204 Identities=19% Similarity=0.164 Sum_probs=178.7
Q ss_pred CCCCCCcHHhHHHHcCCHHHHHHHHhCCCC---CCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHH
Q 040452 98 ADDENNTALHEAVCHGNVQVVKILTGQDPD---YPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALH 174 (316)
Q Consensus 98 ~d~~~~t~l~~A~~~~~~~~~~~Ll~~~~~---~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~ 174 (316)
.|..|.||||+|+..|+.+++++|++.+.. .....+..|.||||+|+..|+.+++++|+++|++++.++..|.||||
T Consensus 4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 83 (236)
T 1ikn_D 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLH 83 (236)
T ss_dssp ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHH
T ss_pred CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence 478899999999999999999999988653 23467888999999999999999999999999999999999999999
Q ss_pred HHHHhhccccccccCcccHHHHHHHHhcCccc----cccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccC-
Q 040452 175 AAAMHFYYGKCLVCSSENWVIIAASLLNNKVI----ILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQR- 249 (316)
Q Consensus 175 ~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~----~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~- 249 (316)
+|+..++.+ ++++|++.+.. ......+..|.||||+|+..|+.+++++|+++|++ . +..+.
T Consensus 84 ~A~~~~~~~------------~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~-~~~~~~ 149 (236)
T 1ikn_D 84 LACEQGCLA------------SVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-V-NAQEPC 149 (236)
T ss_dssp HHHHHTCHH------------HHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC-T-TCCCTT
T ss_pred HHHHcCCHH------------HHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-C-CCCCCC
Confidence 999999999 99999998751 12466788899999999999999999999999998 5 56666
Q ss_pred CCchHHHHHHhcCCHHHHHHHHhcCCC---CCCCCCChHHHHHHcCCHHHHHHHHhcccccc--Ccccccc
Q 040452 250 SKMTALRLAAGQRHARTVKTILSLNPE---FNGEGDTPLPVAAKFGHFNIANVLIKREKLAQ--HEDEELE 315 (316)
Q Consensus 250 ~~~t~l~~A~~~~~~~~v~~L~~~~~~---~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~~~ 315 (316)
.|.||||+|+..|+.+++++|++.|++ .+..|.|||++|+..|+.+++++|+++|+++. ..+.+++
T Consensus 150 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~ 220 (236)
T 1ikn_D 150 NGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDE 220 (236)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchH
Confidence 899999999999999999999999998 56789999999999999999999999999876 5454443
No 37
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.9e-36 Score=246.88 Aligned_cols=203 Identities=20% Similarity=0.176 Sum_probs=161.3
Q ss_pred CCCCCCcHHhHHHHcCCHHHHHHHHhCCCCC-------CCCCCCCCCchhHHHHhcCCH-HHHHHHHhCCCCCccCCCCC
Q 040452 98 ADDENNTALHEAVCHGNVQVVKILTGQDPDY-------PYSANNYGKTQLYLAAKGRYS-EMVIELLENSTSVSYEGPNG 169 (316)
Q Consensus 98 ~d~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~-------~~~~~~~~~~~l~~a~~~~~~-~~v~~Ll~~g~~~~~~~~~~ 169 (316)
.|..+.++|+.|+..|+.++|++|++.+... ....+..+.|||+.|+..+.. .++++|++.|++++.+|.+|
T Consensus 7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G 86 (269)
T 4b93_B 7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDG 86 (269)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTS
T ss_pred cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCC
Confidence 4666789999999999999999999987653 224566789999999988765 58899999999999999999
Q ss_pred CCHHHHHHHhhccccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccC
Q 040452 170 KTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQR 249 (316)
Q Consensus 170 ~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~ 249 (316)
.||||+|+..|+.+ ++++|++.+. .....+..|.||++.|+..++.+++++|++.|++ . +..+.
T Consensus 87 ~TpLh~A~~~g~~~------------~v~~Ll~~~a--~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~-~-n~~d~ 150 (269)
T 4b93_B 87 SSPLHVAALHGRAD------------LIPLLLKHGA--NAGARNADQAVPLHLACQQGHFQVVKCLLDSNAK-P-NKKDL 150 (269)
T ss_dssp CCHHHHHHHTTCTT------------HHHHHHHTTC--CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-S-CCCCT
T ss_pred CCHHHHHHHcCcHH------------HHHHHHhcCC--CcCccCCCCCCccccccccChHHHHHHHHHCCCC-C-CCCCC
Confidence 99999999999999 9999999998 6788899999999999999999999999999998 5 78899
Q ss_pred CCchHHHHHHhcCCHHHHHHHHhcCCC---CCCCCCChHHHHHHcCCHHHHHHHHhccccccCccccccC
Q 040452 250 SKMTALRLAAGQRHARTVKTILSLNPE---FNGEGDTPLPVAAKFGHFNIANVLIKREKLAQHEDEELES 316 (316)
Q Consensus 250 ~~~t~l~~A~~~~~~~~v~~L~~~~~~---~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~ 316 (316)
.|.||||+|+..|+.+++++|++.|++ .+..|.||||+|+..|+.++|++|+++|++++.+|.+|++
T Consensus 151 ~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~T 220 (269)
T 4b93_B 151 SGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRT 220 (269)
T ss_dssp TCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCC
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCC
Confidence 999999999999999999999999998 4678999999999999999999999999999999998863
No 38
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=2.8e-35 Score=237.12 Aligned_cols=195 Identities=21% Similarity=0.230 Sum_probs=174.1
Q ss_pred CCCcHHhHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCC-----ccCCCCCCCHHH
Q 040452 101 ENNTALHEAVCHGNVQVVKILTGQ-DPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSV-----SYEGPNGKTALH 174 (316)
Q Consensus 101 ~~~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~-----~~~~~~~~t~L~ 174 (316)
.|+||||+|+..|+.+++++|++. +.+++ ..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVH-QRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcc-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence 589999999999999999999998 77754 77889999999999999999999999999886 667789999999
Q ss_pred HHHHhhccccccccCcccHHHHHHHHhcCccccccccccc-------------cCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 040452 175 AAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVV-------------IGWTPIHYAAYYDQYQLIHMLLKRGSN 241 (316)
Q Consensus 175 ~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~-------------~~~t~l~~A~~~~~~~~~~~Ll~~~~~ 241 (316)
+|+..++.+ ++++|++.+. ..+..+. .|.||||+|+..|+.+++++|+++|++
T Consensus 81 ~A~~~~~~~------------~v~~Ll~~g~--~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 146 (232)
T 2rfa_A 81 IAVINQNVN------------LVRALLARGA--SVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD 146 (232)
T ss_dssp HHHHTTCHH------------HHHHHHHTTC--CTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred HHHHcCCHH------------HHHHHHhCCC--CCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 999999999 9999999988 4444443 799999999999999999999999998
Q ss_pred CccccccCCCchHHHHHHhcCCHHHH----HHHHhcCCC---------CCCCCCChHHHHHHcCCHHHHHHHHhcccccc
Q 040452 242 CFKYCCQRSKMTALRLAAGQRHARTV----KTILSLNPE---------FNGEGDTPLPVAAKFGHFNIANVLIKREKLAQ 308 (316)
Q Consensus 242 ~~~~~~~~~~~t~l~~A~~~~~~~~v----~~L~~~~~~---------~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~ 308 (316)
. +..+..|.||||+|+..|+.+++ ++|++.|++ .+..|.|||++|+..|+.+++++|+++|+...
T Consensus 147 -~-~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~~ 224 (232)
T 2rfa_A 147 -I-RAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIA 224 (232)
T ss_dssp -T-TCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred -C-CCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccch
Confidence 5 78899999999999999999988 999999985 46789999999999999999999999999877
Q ss_pred Cccc
Q 040452 309 HEDE 312 (316)
Q Consensus 309 ~~~~ 312 (316)
....
T Consensus 225 ~~~~ 228 (232)
T 2rfa_A 225 AAHH 228 (232)
T ss_dssp ----
T ss_pred hhhc
Confidence 6543
No 39
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=6.8e-36 Score=249.89 Aligned_cols=229 Identities=20% Similarity=0.170 Sum_probs=188.5
Q ss_pred ccCcchhhhhhhcccCcchHHHHHHHHhhchhhhhccChhhhhhHHHHHHhHhhhhCCCCCCCCcHHhHHHHcCCHHHHH
Q 040452 40 AKNRIRHINIISQKSKTGSTKFMEEILEICPSVLHKSMPKAILRSTLLRNLAILIYCPADDENNTALHEAVCHGNVQVVK 119 (316)
Q Consensus 40 ~~~t~L~~A~~~~~g~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~t~l~~A~~~~~~~~~~ 119 (316)
.|.|||+.| +..|+.+++++|++..... ...+..|.||||+|+..|+.++++
T Consensus 39 ~~~t~l~~A--~~~g~~~~v~~Ll~~g~~~--------------------------~~~~~~g~t~L~~A~~~g~~~~v~ 90 (299)
T 1s70_B 39 DDGAVFLAA--CSSGDTEEVLRLLERGADI--------------------------NYANVDGLTALHQACIDDNVDMVK 90 (299)
T ss_dssp CHHHHHHHH--HHHTCHHHHHHHHHHCCCT--------------------------TCBCTTCCBHHHHHHHTTCHHHHH
T ss_pred CCccHHHHH--HHcCCHHHHHHHHHcCCCC--------------------------cccCCCCCCHHHHHHHcCCHHHHH
Confidence 578999999 9999999999999862110 023578999999999999999999
Q ss_pred HHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhhccccccccCcccHHHHHHH
Q 040452 120 ILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAAS 199 (316)
Q Consensus 120 ~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~ 199 (316)
+|++.|++++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+ ++++
T Consensus 91 ~Ll~~ga~~~-~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~------------~~~~ 157 (299)
T 1s70_B 91 FLVENGANIN-QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEE------------LLQN 157 (299)
T ss_dssp HHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHH------------HHHH
T ss_pred HHHHCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHH------------HHHH
Confidence 9999999965 67888999999999999999999999999999999999999999999888877 6665
Q ss_pred HhcCccc-------------------------cccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchH
Q 040452 200 LLNNKVI-------------------------ILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTA 254 (316)
Q Consensus 200 Ll~~~~~-------------------------~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~ 254 (316)
++..... ......+..|.||||+|+..|+.+++++|++.|++ . +..+..|.||
T Consensus 158 ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d-~-~~~d~~g~tp 235 (299)
T 1s70_B 158 EVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-V-NIKDYDGWTP 235 (299)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-T-TCCCTTCCCH
T ss_pred HHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCC-C-CCcCCCCCcH
Confidence 5543220 12223456799999999999999999999999988 4 7788999999
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC---CCCCCCChHHHHHHcCCHHHHHHHHhccccccCccc
Q 040452 255 LRLAAGQRHARTVKTILSLNPE---FNGEGDTPLPVAAKFGHFNIANVLIKREKLAQHEDE 312 (316)
Q Consensus 255 l~~A~~~~~~~~v~~L~~~~~~---~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~ 312 (316)
||+|+..|+.+++++|++.|++ .|..|.|||++|++. ..+.++.+++.........+
T Consensus 236 L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~-~~~~l~~l~~~~~~~~~~~~ 295 (299)
T 1s70_B 236 LHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED-ILGYLEELQKKQNLLHSEKR 295 (299)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG-GGHHHHHHHHHTTSCC----
T ss_pred HHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH-HHHHHHHHHHHHhhhhcccc
Confidence 9999999999999999999998 578899999999765 45555555555444443333
No 40
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=1.8e-34 Score=227.28 Aligned_cols=191 Identities=19% Similarity=0.144 Sum_probs=175.3
Q ss_pred CCCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHh
Q 040452 100 DENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMH 179 (316)
Q Consensus 100 ~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~ 179 (316)
..+.|||+.|+..|+.+.++.|+..++......+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 46889999999999999999999988733457788999999999999999999999999999999999999999999999
Q ss_pred hccccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHH
Q 040452 180 FYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAA 259 (316)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~ 259 (316)
++.+ ++++|++.+. ...+..+..|.||||.|+..|+.+++++|++.+.. ..+..+..|.||||+|+
T Consensus 83 ~~~~------------~~~~Ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~g~t~L~~A~ 148 (201)
T 3hra_A 83 GRTE------------ILAYMLKHAT-PDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE-DIDFQNDFGYTALIEAV 148 (201)
T ss_dssp TCHH------------HHHHHHHHSC-CCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCC-CTTCCCTTSCCHHHHHH
T ss_pred CCHH------------HHHHHHhccC-cccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CcCCCCCCCCCHHHHHH
Confidence 9999 9999995444 36788899999999999999999999999999943 34788999999999999
Q ss_pred hcCC-----HHHHHHHHhcCCC---CCCCCCChHHHHHHcCCHHHHHHHHhcc
Q 040452 260 GQRH-----ARTVKTILSLNPE---FNGEGDTPLPVAAKFGHFNIANVLIKRE 304 (316)
Q Consensus 260 ~~~~-----~~~v~~L~~~~~~---~~~~g~t~l~~A~~~~~~~~~~~Ll~~g 304 (316)
..++ .+++++|++.|++ .+..|.|||++|+..|+.+++++|+++|
T Consensus 149 ~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 149 GLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred HhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 9998 9999999999998 5678999999999999999999999987
No 41
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=5.8e-35 Score=244.20 Aligned_cols=202 Identities=23% Similarity=0.208 Sum_probs=182.3
Q ss_pred CCCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHh
Q 040452 100 DENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMH 179 (316)
Q Consensus 100 ~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~ 179 (316)
..+.|||+.|+..|+.+++++|++.|.+++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus 38 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~ 116 (299)
T 1s70_B 38 FDDGAVFLAACSSGDTEEVLRLLERGADIN-YANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC 116 (299)
T ss_dssp ECHHHHHHHHHHHTCHHHHHHHHHHCCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred cCCccHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Confidence 467899999999999999999999999865 6788899999999999999999999999999999999999999999999
Q ss_pred hccccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcC-CCC----------------
Q 040452 180 FYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRG-SNC---------------- 242 (316)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~-~~~---------------- 242 (316)
|+.+ ++++|++.+. ..+..+..|.|||++|+..+..+++++++... .+.
T Consensus 117 g~~~------------~v~~Ll~~g~--~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 182 (299)
T 1s70_B 117 GYLD------------IAEYLISQGA--HVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDAR 182 (299)
T ss_dssp TCHH------------HHHHHHHTTC--CTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHH------------HHHHHHhCCC--CCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHH
Confidence 9999 9999999998 67888999999999999999999998877532 220
Q ss_pred --------ccccccCCCchHHHHHHhcCCHHHHHHHHhcCCC---CCCCCCChHHHHHHcCCHHHHHHHHhccccccCcc
Q 040452 243 --------FKYCCQRSKMTALRLAAGQRHARTVKTILSLNPE---FNGEGDTPLPVAAKFGHFNIANVLIKREKLAQHED 311 (316)
Q Consensus 243 --------~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~---~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~ 311 (316)
.....+..|.||||+|+..|+.+++++|++.|++ .+..|.||||+|+..|+.+++++|+++|++++.+|
T Consensus 183 ~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d 262 (299)
T 1s70_B 183 QWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVN 262 (299)
T ss_dssp HHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcC
Confidence 1123456799999999999999999999999988 56789999999999999999999999999999999
Q ss_pred ccccC
Q 040452 312 EELES 316 (316)
Q Consensus 312 ~~~~~ 316 (316)
..|.+
T Consensus 263 ~~g~t 267 (299)
T 1s70_B 263 KVGQT 267 (299)
T ss_dssp TTSCC
T ss_pred CCCCC
Confidence 88753
No 42
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=4.5e-34 Score=217.62 Aligned_cols=156 Identities=26% Similarity=0.342 Sum_probs=106.6
Q ss_pred chhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCccccccccccccCC
Q 040452 138 TQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGW 217 (316)
Q Consensus 138 ~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~ 217 (316)
++|+.|++.|+.++|++|++.|++++.+|..|.||||+|+..++.+ ++++|++.+. .++..|..|.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~------------~~~~ll~~ga--d~~~~d~~g~ 71 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKE------------VVKLLISKGA--DVNAKDSDGR 71 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH------------HHHHHHHTTC--CTTCCCTTSC
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHH------------HHHHHHhccc--chhhhccCCC
Confidence 3566677777777777777777777777777777777777776666 7777776666 5566666777
Q ss_pred cHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCCC---CCCCCCChHHHHHHcCCH
Q 040452 218 TPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPE---FNGEGDTPLPVAAKFGHF 294 (316)
Q Consensus 218 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~---~~~~g~t~l~~A~~~~~~ 294 (316)
||||+|+..|+.+++++|+++|++ + +..+..|+||||+|+..|+.+++++|++.|++ .+..|.|||++|+..|+.
T Consensus 72 TpLh~A~~~g~~~~v~~Ll~~gad-v-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~ 149 (169)
T 4gpm_A 72 TPLHHAAENGHKEVVKLLISKGAD-V-NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNE 149 (169)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCC-T-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred CHHHHHHHcCCHHHHHHHHHCcCC-C-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCH
Confidence 777777777777777777777766 3 56667777777777777777777777777766 456677777777777777
Q ss_pred HHHHHHHhccccccC
Q 040452 295 NIANVLIKREKLAQH 309 (316)
Q Consensus 295 ~~~~~Ll~~g~~~~~ 309 (316)
+++++|+++||+++.
T Consensus 150 ~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 150 EVVKLLEKQGGWLEH 164 (169)
T ss_dssp HHHHHHHTC------
T ss_pred HHHHHHHHCCCCcCC
Confidence 777777777777654
No 43
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=1.1e-34 Score=245.43 Aligned_cols=266 Identities=13% Similarity=0.027 Sum_probs=194.9
Q ss_pred HHHHHcCCCCcccccccccccccccccccccCcchhhhhhhcccCcchHHHHHHHHhhchh-hhhccChhhhhhHHHHHH
Q 040452 11 FKAAAEGHADEPFKKDTRSNEIRGLLTAQAKNRIRHINIISQKSKTGSTKFMEEILEICPS-VLHKSMPKAILRSTLLRN 89 (316)
Q Consensus 11 ~~A~~~g~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~A~~~~~g~~~i~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 89 (316)
..++.....+ ++++|++ .|.+....+..|.++++ |+.+++++|++.+..... .+..+.. ... ..
T Consensus 24 ~~~~~~~~~d-lv~~ll~-~ga~i~~~~~~g~~~~~-------g~~~~v~~Ll~~g~~~~~~~~~~a~~--~~~---~~- 88 (327)
T 1sw6_A 24 AGPIITFTHD-LTSDFLS-SPLKIMKALPSPVVNDN-------EQKMKLEAFLQRLLFPEIQEMPTSLN--NDS---SN- 88 (327)
T ss_dssp -CCEEECCTT-CCCSTTT-SSCCCEECBCCCCCCCH-------HHHHHHHHHHHHHHC----------------------
T ss_pred ccchhhhcCc-hHHHHhh-CCcccccCCCCCCcccC-------chhHHHHHHHHhccCCccccchHhhh--ccc---cc-
Confidence 3344467778 9999999 77775455566777654 899999999998532110 0000000 000 00
Q ss_pred hHhhhhCCCCCCCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCC
Q 040452 90 LAILIYCPADDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNG 169 (316)
Q Consensus 90 ~~~l~~~~~d~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~ 169 (316)
-..+......+..|.|+..+..+++++|++.+.+++...+..|.||||+|+..|+.+++++|+++|++++.++..|
T Consensus 89 ----~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g 164 (327)
T 1sw6_A 89 ----RNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMG 164 (327)
T ss_dssp -------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTC
T ss_pred ----ccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence 0000112223446888888889999999999999874488999999999999999999999999999999999999
Q ss_pred CCHHHHHHHhhc---cccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHh----cCCHHHHHHHHhc----
Q 040452 170 KTALHAAAMHFY---YGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAY----YDQYQLIHMLLKR---- 238 (316)
Q Consensus 170 ~t~L~~a~~~~~---~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~----~~~~~~~~~Ll~~---- 238 (316)
.||||+|+..|+ .+ +++.|++.+. ...+..|..|+||||+|+. .|+.+++++|++.
T Consensus 165 ~TpLh~A~~~g~~~~~~------------~~~~ll~~~~-~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~ 231 (327)
T 1sw6_A 165 ESCLVKAVKSVNNYDSG------------TFEALLDYLY-PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGW 231 (327)
T ss_dssp CCHHHHHHHSSHHHHTT------------CHHHHHHHHG-GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcccccHH------------HHHHHHHhhh-ccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHH
Confidence 999999999888 66 6777777664 3577889999999999999 8999999999987
Q ss_pred ----------------CCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCCC-CCCCCCChHHHHHHcCCHHHHHHHH
Q 040452 239 ----------------GSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPE-FNGEGDTPLPVAAKFGHFNIANVLI 301 (316)
Q Consensus 239 ----------------~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~-~~~~g~t~l~~A~~~~~~~~~~~Ll 301 (316)
+++ . +..+..|.||||.|+. +++|++.+.+ .+..|.||||+|+..|+.+++++|+
T Consensus 232 ~~~~~~~~i~~~~~~~g~~-~-~~~~~~g~t~L~~a~~------~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll 303 (327)
T 1sw6_A 232 IVKKQNRPIQSGTNEKESK-P-NDKNGERKDSILENLD------LKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALL 303 (327)
T ss_dssp HHHGGGCCEEEC------------------CHHHHHCS------HHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHH
T ss_pred HhcccchHHHhhhhcccCC-c-ccccccCCChhHHHHH------HHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 555 3 6788899999999996 8999998776 7789999999999999999999999
Q ss_pred hccccccCccccccC
Q 040452 302 KREKLAQHEDEELES 316 (316)
Q Consensus 302 ~~g~~~~~~~~~~~~ 316 (316)
++|++++.++.+|++
T Consensus 304 ~~Gad~~~~d~~G~T 318 (327)
T 1sw6_A 304 DYGADPFIANKSGLR 318 (327)
T ss_dssp HTTCCTTCCCTTSCC
T ss_pred HcCCCCcccCCCCCC
Confidence 999999999998863
No 44
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=2.9e-35 Score=237.71 Aligned_cols=215 Identities=21% Similarity=0.205 Sum_probs=182.2
Q ss_pred cccccCcchhhhhhhcccCcchHHHHHHHHhhchhhhhccChhhhhhHHHHHHhHhhhhCCCCCCCCcHHhHHHHcCCHH
Q 040452 37 TAQAKNRIRHINIISQKSKTGSTKFMEEILEICPSVLHKSMPKAILRSTLLRNLAILIYCPADDENNTALHEAVCHGNVQ 116 (316)
Q Consensus 37 ~~~~~~t~L~~A~~~~~g~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~t~l~~A~~~~~~~ 116 (316)
.+..|.||||+| +..|+.+++++|++........ -...+..|.||||+|+..|+.+
T Consensus 4 ~d~~g~t~L~~A--~~~g~~~~v~~Ll~~~~~~~~~----------------------~~~~~~~g~t~L~~A~~~~~~~ 59 (236)
T 1ikn_D 4 LTEDGDSFLHLA--IIHEEKALTMEVIRQVKGDLAF----------------------LNFQNNLQQTPLHLAVITNQPE 59 (236)
T ss_dssp ---CCCCTTHHH--HHTTCSSSSSCCCC-----CCC----------------------CCCCCTTCCCHHHHHHHTTCHH
T ss_pred CCCCCCchhHHH--HHcCChhHHHHHHHHhhccHHH----------------------hhccCCCCCCHHHHHHHcCCHH
Confidence 445699999999 9999999999999863221000 0124678999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCC------CccCCCCCCCHHHHHHHhhccccccccCc
Q 040452 117 VVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTS------VSYEGPNGKTALHAAAMHFYYGKCLVCSS 190 (316)
Q Consensus 117 ~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~------~~~~~~~~~t~L~~a~~~~~~~~~~~~~~ 190 (316)
++++|++.|.++. ..+..|.||||+|+..|+.+++++|++.|++ ++..+..|.||||+|+..++.+
T Consensus 60 ~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~------- 131 (236)
T 1ikn_D 60 IAEALLGAGCDPE-LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLG------- 131 (236)
T ss_dssp HHHCCCSCCCCSC-CCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHH-------
T ss_pred HHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHH-------
Confidence 9999999999865 6788999999999999999999999999976 4667888999999999999999
Q ss_pred ccHHHHHHHHhcCccccccccccc-cCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHH
Q 040452 191 ENWVIIAASLLNNKVIILKPLFVV-IGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKT 269 (316)
Q Consensus 191 ~~~~~~~~~Ll~~~~~~~~~~~~~-~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~ 269 (316)
++++|++.+. ..+..+. .|.||||+|+..|+.+++++|+++|++ . +..+..|.|||++|+..|+.+++++
T Consensus 132 -----~v~~Ll~~g~--~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~-~~~~~~g~tpl~~A~~~~~~~~~~~ 202 (236)
T 1ikn_D 132 -----IVELLVSLGA--DVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-V-NRVTYQGYSPYQLTWGRPSTRIQQQ 202 (236)
T ss_dssp -----HHHHHHHHTC--CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC-S-CCCCTTCCCGGGGCTTSSCHHHHHH
T ss_pred -----HHHHHHHcCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-C-CcccCCCCCHHHHHHccCchHHHHH
Confidence 9999999998 6777776 899999999999999999999999998 4 7889999999999999999999999
Q ss_pred HHhcCCC-----CCCCCCChHHHHHHcC
Q 040452 270 ILSLNPE-----FNGEGDTPLPVAAKFG 292 (316)
Q Consensus 270 L~~~~~~-----~~~~g~t~l~~A~~~~ 292 (316)
|+++|++ .+..|.|+.+.+....
T Consensus 203 Ll~~ga~~~~~~~~~~~~~~~~~~~~~~ 230 (236)
T 1ikn_D 203 LGQLTLENLQMLPESEDEESYDTESEFT 230 (236)
T ss_dssp HHTTSCGGGSSCCCCCTTTCCCCC----
T ss_pred HHHcchhhhhcCCccchHHHHhhhcccc
Confidence 9999997 5677888877665443
No 45
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=4e-34 Score=230.34 Aligned_cols=196 Identities=17% Similarity=0.119 Sum_probs=173.2
Q ss_pred ccCcchhhhhhhcccCcchHHHHHHHHhhchhhhhccChhhhhhHHHHHHhHhhhhCCCCCCCCcHHhHHHHcCCHHHHH
Q 040452 40 AKNRIRHINIISQKSKTGSTKFMEEILEICPSVLHKSMPKAILRSTLLRNLAILIYCPADDENNTALHEAVCHGNVQVVK 119 (316)
Q Consensus 40 ~~~t~L~~A~~~~~g~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~t~l~~A~~~~~~~~~~ 119 (316)
.|.||||+| +..|+.+++++|++...... ...|..|.||||+|+..|+.++++
T Consensus 2 ~g~t~L~~A--~~~g~~~~v~~Ll~~~g~~~-------------------------~~~~~~g~t~L~~A~~~g~~~~v~ 54 (232)
T 2rfa_A 2 IWESPLLLA--AKENDVQALSKLLKFEGCEV-------------------------HQRGAMGETALHIAALYDNLEAAM 54 (232)
T ss_dssp CTTCHHHHH--HHTTCHHHHHHHHTTTCSCT-------------------------TCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred CCCCHHHHH--HHcCCHHHHHHHHHhcCCCc-------------------------ccCCCCCCCHHHHHHHcCCHHHHH
Confidence 389999999 99999999999998511100 124678999999999999999999
Q ss_pred HHHhCCCCCC----CCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCC-------------CCCCHHHHHHHhhcc
Q 040452 120 ILTGQDPDYP----YSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGP-------------NGKTALHAAAMHFYY 182 (316)
Q Consensus 120 ~Ll~~~~~~~----~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~-------------~~~t~L~~a~~~~~~ 182 (316)
+|++.++++. ...+..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.
T Consensus 55 ~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~ 134 (232)
T 2rfa_A 55 VLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSE 134 (232)
T ss_dssp HHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCH
T ss_pred HHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCH
Confidence 9999987752 34567899999999999999999999999999988765 799999999999999
Q ss_pred ccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHH----HHHHhcCCCCcc-----ccccCCCch
Q 040452 183 GKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLI----HMLLKRGSNCFK-----YCCQRSKMT 253 (316)
Q Consensus 183 ~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~----~~Ll~~~~~~~~-----~~~~~~~~t 253 (316)
+ ++++|++.+. ..+..|..|.||||+|+..|+.+++ ++|++.+++ .. +..+..|.|
T Consensus 135 ~------------~v~~Ll~~ga--~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~-~~~~~~~~~~~~~g~t 199 (232)
T 2rfa_A 135 E------------IVRLLIEHGA--DIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG-DHLKSLELVPNNQGLT 199 (232)
T ss_dssp H------------HHHHHHHTTC--CTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCS-CSSCCGGGCCCTTSCC
T ss_pred H------------HHHHHHHCCC--CCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCc-hhhhhhhccCCCCCCC
Confidence 9 9999999998 7888999999999999999999988 999999987 32 467889999
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCC
Q 040452 254 ALRLAAGQRHARTVKTILSLNPEF 277 (316)
Q Consensus 254 ~l~~A~~~~~~~~v~~L~~~~~~~ 277 (316)
|||+|+..|+.+++++|+++|...
T Consensus 200 pl~~A~~~g~~~~v~~Ll~~g~~~ 223 (232)
T 2rfa_A 200 PFKLAGVEGNIVMFQHLMQKRKHI 223 (232)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHhcCccc
Confidence 999999999999999999998763
No 46
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=2.4e-34 Score=235.18 Aligned_cols=194 Identities=21% Similarity=0.215 Sum_probs=172.5
Q ss_pred CCCcHHhHHHHcCCHH----HHHHHHhCCCCCCC---CCCCCCCchhHHHHhc---CCHHHHHHHHhCCCCCccC-----
Q 040452 101 ENNTALHEAVCHGNVQ----VVKILTGQDPDYPY---SANNYGKTQLYLAAKG---RYSEMVIELLENSTSVSYE----- 165 (316)
Q Consensus 101 ~~~t~l~~A~~~~~~~----~~~~Ll~~~~~~~~---~~~~~~~~~l~~a~~~---~~~~~v~~Ll~~g~~~~~~----- 165 (316)
.|.||||+|+..|+.+ ++++|++.+.+++. ..+..|.||||+|+.. |+.+++++|++.|++++..
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 80 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN 80 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence 4789999999999997 66788888988763 3788999999999999 9999999999999776633
Q ss_pred ------CCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCcccccccccccc-------------CCcHHHHHHhc
Q 040452 166 ------GPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVI-------------GWTPIHYAAYY 226 (316)
Q Consensus 166 ------~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~-------------~~t~l~~A~~~ 226 (316)
+..|.||||+|+..|+.+ ++++|++.+. ..+..+.. |.||||+|+..
T Consensus 81 ~~~~~~d~~g~t~L~~A~~~g~~~------------~v~~Ll~~ga--~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~ 146 (256)
T 2etb_A 81 AQCTDEFYQGHSALHIAIEKRSLQ------------CVKLLVENGA--DVHLRACGRFFQKHQGTCFYFGELPLSLAACT 146 (256)
T ss_dssp CCCCSTTTTTCCHHHHHHHTTCHH------------HHHHHHHTTC--CTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHT
T ss_pred cccccccccCCCHHHHHHHcCCHH------------HHHHHHHcCC--CCCcccccccccccccccccCCCCHHHHHHHc
Confidence 367999999999999999 9999999998 56666665 99999999999
Q ss_pred CCHHHHHHHHh---cCCCCccccccCCCchHHHHHHh--cCCHH-------HHHHHHhcCCCC----------CCCCCCh
Q 040452 227 DQYQLIHMLLK---RGSNCFKYCCQRSKMTALRLAAG--QRHAR-------TVKTILSLNPEF----------NGEGDTP 284 (316)
Q Consensus 227 ~~~~~~~~Ll~---~~~~~~~~~~~~~~~t~l~~A~~--~~~~~-------~v~~L~~~~~~~----------~~~g~t~ 284 (316)
|+.+++++|++ .|++ . +..+..|+||||+|+. .++.+ ++++|++.|++. +..|.||
T Consensus 147 ~~~~~v~~Ll~~~~~ga~-~-n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tp 224 (256)
T 2etb_A 147 KQWDVVTYLLENPHQPAS-L-EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTP 224 (256)
T ss_dssp TCHHHHHHHHHCSSCCCC-T-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCH
T ss_pred CCHHHHHHHHhccccCCC-c-CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCH
Confidence 99999999999 8888 4 7889999999999999 88888 999999997653 6789999
Q ss_pred HHHHHHcCCHHHHHHHHhccccccCc
Q 040452 285 LPVAAKFGHFNIANVLIKREKLAQHE 310 (316)
Q Consensus 285 l~~A~~~~~~~~~~~Ll~~g~~~~~~ 310 (316)
|++|+..|+.+++++|+++|++....
T Consensus 225 L~~A~~~g~~~~v~~Ll~~g~~~~~~ 250 (256)
T 2etb_A 225 LKLAAKEGKIEIFRHILQREFSGAAA 250 (256)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhCCCCCCCc
Confidence 99999999999999999999876543
No 47
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=2.9e-34 Score=236.88 Aligned_cols=202 Identities=21% Similarity=0.231 Sum_probs=168.5
Q ss_pred CCCCCCCcHHhHHHHcCCHHHHHHHHh----CCCCCCC---CCCCCCCchhHHHHhc---CCHHHHHHHHhCCCCC----
Q 040452 97 PADDENNTALHEAVCHGNVQVVKILTG----QDPDYPY---SANNYGKTQLYLAAKG---RYSEMVIELLENSTSV---- 162 (316)
Q Consensus 97 ~~d~~~~t~l~~A~~~~~~~~~~~Ll~----~~~~~~~---~~~~~~~~~l~~a~~~---~~~~~v~~Ll~~g~~~---- 162 (316)
..+..|.||||+|+..|+.++++.|++ .+.+++. ..+..|.||||+|+.. |+.+++++|++.|+++
T Consensus 8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~ 87 (273)
T 2pnn_A 8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLK 87 (273)
T ss_dssp ---CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHH
T ss_pred CCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchh
Confidence 347889999999999999998888886 4554432 3577899999999986 9999999999998652
Q ss_pred ---c----cCCCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCccccccccccc--------------cCCcHHH
Q 040452 163 ---S----YEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVV--------------IGWTPIH 221 (316)
Q Consensus 163 ---~----~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~--------------~~~t~l~ 221 (316)
+ ..+..|.||||+|+..|+.+ ++++|++.+. ..+..+. .|.||||
T Consensus 88 ~~i~~~~~~~d~~g~tpL~~A~~~g~~~------------~v~~Ll~~ga--~~~~~~~~~~~~~~~~~~~~~~g~tpL~ 153 (273)
T 2pnn_A 88 QFVNASYTDSYYKGQTALHIAIERRNMT------------LVTLLVENGA--DVQAAANGDFFKKTKGRPGFYFGELPLS 153 (273)
T ss_dssp HHHTCCCCSTTTTTCCHHHHHHHTTCHH------------HHHHHHHTTC--CTTCCBCSGGGSSCSSSCCCCSCBSHHH
T ss_pred HHhhcccccccCCCCCHHHHHHHcCCHH------------HHHHHHHCCC--CcCccccccccccccccccccCCCCHHH
Confidence 2 25668999999999999999 9999999998 5666665 7999999
Q ss_pred HHHhcCCHHHHHHHHh---cCCCCccccccCCCchHHHHHHhcCC---------HHHHHHHHhcCCC----------CCC
Q 040452 222 YAAYYDQYQLIHMLLK---RGSNCFKYCCQRSKMTALRLAAGQRH---------ARTVKTILSLNPE----------FNG 279 (316)
Q Consensus 222 ~A~~~~~~~~~~~Ll~---~~~~~~~~~~~~~~~t~l~~A~~~~~---------~~~v~~L~~~~~~----------~~~ 279 (316)
+|+..|+.+++++|++ .|++ . +..+..|+||||+|+..|+ .+++++|++.|++ .+.
T Consensus 154 ~A~~~g~~~~v~~Ll~~~~~gad-~-~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~ 231 (273)
T 2pnn_A 154 LAACTNQLAIVKFLLQNSWQPAD-I-SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNR 231 (273)
T ss_dssp HHHHTTCHHHHHHHHHCSSCCCC-T-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCT
T ss_pred HHHHcCCHHHHHHHHhcccCCCC-c-eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCC
Confidence 9999999999999999 8888 4 7889999999999999998 8999999999876 467
Q ss_pred CCCChHHHHHHcCCHHHHHHHHhccc-cccCccccc
Q 040452 280 EGDTPLPVAAKFGHFNIANVLIKREK-LAQHEDEEL 314 (316)
Q Consensus 280 ~g~t~l~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~~ 314 (316)
.|.|||++|+..|+.+++++|+++|+ ++......+
T Consensus 232 ~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~ 267 (273)
T 2pnn_A 232 KGLTPLALAASSGKIGVLAYILQREIHEPECRHAAA 267 (273)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHHTC---------
T ss_pred CCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhh
Confidence 89999999999999999999999999 777665543
No 48
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=1.6e-33 Score=232.38 Aligned_cols=214 Identities=18% Similarity=0.187 Sum_probs=164.3
Q ss_pred CCCCCchHHHHHHcCCCCccccccccc---cccccc----ccccccCcchhhhhhhcc---cCcchHHHHHHHHhhchhh
Q 040452 3 PVSTHPNLFKAAAEGHADEPFKKDTRS---NEIRGL----LTAQAKNRIRHINIISQK---SKTGSTKFMEEILEICPSV 72 (316)
Q Consensus 3 ~~~~~~~l~~A~~~g~~~~~~~~ll~~---~~~~~~----~~~~~~~t~L~~A~~~~~---g~~~i~~~L~~~~~~~~~~ 72 (316)
...+.++||.||+.|+++ +|+.|++. .+.+.. ..+..|.||||+| +.. |+.+++++|++...
T Consensus 10 d~~g~t~L~~A~~~g~~~-~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A--~~~~~~g~~~~v~~Ll~~ga----- 81 (273)
T 2pnn_A 10 RLYDRRSIFDAVAQSNCQ-ELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA--MLNLHNGQNDTIALLLDVAR----- 81 (273)
T ss_dssp -CCCHHHHHHHHHTTCSS-TTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHH--HHSCBTTBCHHHHHHHHHHH-----
T ss_pred CcccchHHHHHHHcCCHH-HHHHHHHHHhhcccccCCcccccCcCCCCHHHHH--HHHHhcCChHHHHHHHHhhc-----
Confidence 356789999999999999 99999971 222211 2355799999999 976 99999999999843
Q ss_pred hhccChhhhhhHHHHHHhHhhhhC---CCCCCCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCC--------------C
Q 040452 73 LHKSMPKAILRSTLLRNLAILIYC---PADDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANN--------------Y 135 (316)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~~---~~d~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~--------------~ 135 (316)
+...++ .++.. ..+..|.||||+|+..|+.+++++|++.|++++ ..+. .
T Consensus 82 ----------~~~~~~---~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~~ 147 (273)
T 2pnn_A 82 ----------KTDSLK---QFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ-AAANGDFFKKTKGRPGFYF 147 (273)
T ss_dssp ----------HTTCHH---HHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBCSGGGSSCSSSCCCCS
T ss_pred ----------cccchh---HHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC-ccccccccccccccccccC
Confidence 222233 44443 245689999999999999999999999999976 4443 7
Q ss_pred CCchhHHHHhcCCHHHHHHHHh---CCCCCccCCCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCcccccc---
Q 040452 136 GKTQLYLAAKGRYSEMVIELLE---NSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILK--- 209 (316)
Q Consensus 136 ~~~~l~~a~~~~~~~~v~~Ll~---~g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~--- 209 (316)
|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++...- .......++++|++.+.+...
T Consensus 148 g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~---~~~~~~~~v~~Ll~~ga~~n~~~~ 224 (273)
T 2pnn_A 148 GELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVD---NTKFVTSMYNEILILGAKLHPTLK 224 (273)
T ss_dssp CBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHH---HHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred CCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchh---HHHHHHHHHHHHHHhhhhcccccc
Confidence 9999999999999999999999 9999999999999999999998772100 000001188888888772211
Q ss_pred --ccccccCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 040452 210 --PLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSN 241 (316)
Q Consensus 210 --~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~ 241 (316)
+..|..|.||||+|+..|+.+++++|+++|+.
T Consensus 225 ~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~ 258 (273)
T 2pnn_A 225 LEEITNRKGLTPLALAASSGKIGVLAYILQREIH 258 (273)
T ss_dssp GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred cccccCCCCCCHHHHHHHhChHHHHHHHHHCCCC
Confidence 24677788888888888888888888887775
No 49
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=7.4e-33 Score=210.91 Aligned_cols=159 Identities=25% Similarity=0.262 Sum_probs=147.0
Q ss_pred cHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhhccc
Q 040452 104 TALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYG 183 (316)
Q Consensus 104 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~ 183 (316)
++|+.|+..|+.++|++|++.|++++ ..+..|.|||++|+..++.+++++|++.|++++.++..|.||||+|+..|+.+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn-~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~ 84 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVN-ASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE 84 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHH
Confidence 47999999999999999999999975 78899999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhcCC
Q 040452 184 KCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRH 263 (316)
Q Consensus 184 ~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~ 263 (316)
++++|++.+. +++..|..|+||||+|+..|+.+++++|++.|++ . +..+..|+|||++|++.|+
T Consensus 85 ------------~v~~Ll~~ga--dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~-~~~d~~G~TpL~~A~~~g~ 148 (169)
T 4gpm_A 85 ------------VVKLLISKGA--DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-V-NTSDSDGRTPLDLAREHGN 148 (169)
T ss_dssp ------------HHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-T-TCCCTTSCCHHHHHHHTTC
T ss_pred ------------HHHHHHHCcC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-c-cccCCCCCCHHHHHHHcCC
Confidence 9999999998 7888999999999999999999999999999998 5 7889999999999999999
Q ss_pred HHHHHHHHhcCCCCCC
Q 040452 264 ARTVKTILSLNPEFNG 279 (316)
Q Consensus 264 ~~~v~~L~~~~~~~~~ 279 (316)
.+++++|+++|++.+.
T Consensus 149 ~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 149 EEVVKLLEKQGGWLEH 164 (169)
T ss_dssp HHHHHHHHTC------
T ss_pred HHHHHHHHHCCCCcCC
Confidence 9999999999998653
No 50
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=9.4e-34 Score=231.63 Aligned_cols=202 Identities=20% Similarity=0.145 Sum_probs=169.4
Q ss_pred ccCcchhhhhhhcccCcchHHHHHHHHhhchhhhhccChhhhhhHHHHHHhHhhhhCCCCCCCCcHHhHHHHc---CCHH
Q 040452 40 AKNRIRHINIISQKSKTGSTKFMEEILEICPSVLHKSMPKAILRSTLLRNLAILIYCPADDENNTALHEAVCH---GNVQ 116 (316)
Q Consensus 40 ~~~t~L~~A~~~~~g~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~t~l~~A~~~---~~~~ 116 (316)
.|.||||.| +..|+.++++.|++..-.....+ .. .....|..|.||||+|+.. |+.+
T Consensus 1 ~G~t~L~~A--~~~g~~~~v~~ll~~l~~~g~~i-----------~~-------~~~~~d~~g~t~L~~A~~~~~~g~~~ 60 (256)
T 2etb_A 1 FDRDRLFSV--VSRGVPEELTGLLEYLRWNSKYL-----------TD-------SAYTEGSTGKTCLMKAVLNLQDGVNA 60 (256)
T ss_dssp CCHHHHHHH--HHHTCGGGGTTHHHHHHHHTCCT-----------TS-------GGGSBTTTTBCHHHHHHHTCBTTBCT
T ss_pred CCccHHHHH--HHcCCHHHHHHHHHHHHHcCCCc-----------cc-------ccccCCCCCCCHHHHHHHccccchHH
Confidence 378999999 99999997766666311110000 00 0001367899999999999 9999
Q ss_pred HHHHHHhCCCCCCCC----------CCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCC-------------CCCHH
Q 040452 117 VVKILTGQDPDYPYS----------ANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPN-------------GKTAL 173 (316)
Q Consensus 117 ~~~~Ll~~~~~~~~~----------~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~-------------~~t~L 173 (316)
++++|++.+++.... .+..|.||||+|+..|+.+++++|+++|++++..+.. |.|||
T Consensus 61 ~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL 140 (256)
T 2etb_A 61 CIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPL 140 (256)
T ss_dssp THHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHH
T ss_pred HHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHH
Confidence 999999987664322 2367999999999999999999999999999999886 99999
Q ss_pred HHHHHhhccccccccCcccHHHHHHHHhc---CccccccccccccCCcHHHHHHh--cCCHH-------HHHHHHhcCCC
Q 040452 174 HAAAMHFYYGKCLVCSSENWVIIAASLLN---NKVIILKPLFVVIGWTPIHYAAY--YDQYQ-------LIHMLLKRGSN 241 (316)
Q Consensus 174 ~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~---~~~~~~~~~~~~~~~t~l~~A~~--~~~~~-------~~~~Ll~~~~~ 241 (316)
|+|+..|+.+ ++++|++ .+. ..+..|..|+||||+|+. .++.+ ++++|+++|++
T Consensus 141 ~~A~~~~~~~------------~v~~Ll~~~~~ga--~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~ 206 (256)
T 2etb_A 141 SLAACTKQWD------------VVTYLLENPHQPA--SLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGAR 206 (256)
T ss_dssp HHHHHTTCHH------------HHHHHHHCSSCCC--CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHH------------HHHHHHhccccCC--CcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCC
Confidence 9999999999 9999999 787 788899999999999999 88888 99999999887
Q ss_pred Ccc------ccccCCCchHHHHHHhcCCHHHHHHHHhcCCC
Q 040452 242 CFK------YCCQRSKMTALRLAAGQRHARTVKTILSLNPE 276 (316)
Q Consensus 242 ~~~------~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~ 276 (316)
.. +..+..|.||||+|+..|+.+++++|+++|..
T Consensus 207 -~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~ 246 (256)
T 2etb_A 207 -LCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFS 246 (256)
T ss_dssp -HSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -cccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC
Confidence 32 67889999999999999999999999998764
No 51
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=1.4e-32 Score=216.34 Aligned_cols=192 Identities=18% Similarity=0.143 Sum_probs=172.9
Q ss_pred ccCcchhhhhhhcccCcchHHHHHHHHhhchhhhhccChhhhhhHHHHHHhHhhhhCCCCCCCCcHHhHHHHcCCHHHHH
Q 040452 40 AKNRIRHINIISQKSKTGSTKFMEEILEICPSVLHKSMPKAILRSTLLRNLAILIYCPADDENNTALHEAVCHGNVQVVK 119 (316)
Q Consensus 40 ~~~t~L~~A~~~~~g~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~t~l~~A~~~~~~~~~~ 119 (316)
.+.||||.| +..|+.+++++|++..... -...+..|.||||+|+..|+.++++
T Consensus 4 ~~~~~L~~A--~~~g~~~~v~~ll~~~~~~-------------------------~~~~~~~g~t~L~~A~~~~~~~~v~ 56 (201)
T 3hra_A 4 YEVGALLEA--ANQRDTKKVKEILQDTTYQ-------------------------VDEVDTEGNTPLNIAVHNNDIEIAK 56 (201)
T ss_dssp CCTTHHHHH--HHTTCHHHHHHHHTCTTCC-------------------------TTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred ccccHHHHH--HHhccHHHHHHHHHcCCCC-------------------------CCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 478999999 9999999999999852211 0124678999999999999999999
Q ss_pred HHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHH-hCCCCCccCCCCCCCHHHHHHHhhccccccccCcccHHHHHH
Q 040452 120 ILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELL-ENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAA 198 (316)
Q Consensus 120 ~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll-~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~ 198 (316)
+|++.|.+++ ..+..|.||||+|+..|+.+++++|+ ..+.+++..+..|.||||+|+..++.+ +++
T Consensus 57 ~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~------------~v~ 123 (201)
T 3hra_A 57 ALIDRGADIN-LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHID------------NVK 123 (201)
T ss_dssp HHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHH------------HHH
T ss_pred HHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHH------------HHH
Confidence 9999999965 67888999999999999999999999 666899999999999999999999999 999
Q ss_pred HHhcCccccccccccccCCcHHHHHHhcCC-----HHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhc
Q 040452 199 SLLNNKVIILKPLFVVIGWTPIHYAAYYDQ-----YQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSL 273 (316)
Q Consensus 199 ~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~-----~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~ 273 (316)
+|++.+. ...+..+..|.||||.|+..++ .+++++|+++|++ . +..+..|.|||++|+..|+.+++++|+++
T Consensus 124 ~Ll~~g~-~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~-~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 200 (201)
T 3hra_A 124 LLLEDGR-EDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD-Q-SIKDNSGRTAMDYANQKGYTEISKILAQY 200 (201)
T ss_dssp HHHHHCC-CCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCC-T-TCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred HHHHcCC-CCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCC-C-CccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence 9999984 3678889999999999999998 9999999999998 5 78899999999999999999999999987
Q ss_pred C
Q 040452 274 N 274 (316)
Q Consensus 274 ~ 274 (316)
|
T Consensus 201 G 201 (201)
T 3hra_A 201 N 201 (201)
T ss_dssp C
T ss_pred C
Confidence 6
No 52
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=100.00 E-value=1.7e-32 Score=224.61 Aligned_cols=197 Identities=21% Similarity=0.195 Sum_probs=169.2
Q ss_pred CCCCCcHHhHHHHcCCHHH----HHHHHhCCCCCCCCC---CCCCCchhHHHH---hcCCHHHHHHHHhCCCC-------
Q 040452 99 DDENNTALHEAVCHGNVQV----VKILTGQDPDYPYSA---NNYGKTQLYLAA---KGRYSEMVIELLENSTS------- 161 (316)
Q Consensus 99 d~~~~t~l~~A~~~~~~~~----~~~Ll~~~~~~~~~~---~~~~~~~l~~a~---~~~~~~~v~~Ll~~g~~------- 161 (316)
+..+.++||.|+..|+.+. +++|++.+.+++... +..|.||||+|+ ..|+.+++++|++.|++
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 81 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF 81 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence 4678999999999999995 555555888765222 367999999999 77999999999998744
Q ss_pred ----CccCCCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCcccccccccc--------------ccCCcHHHHH
Q 040452 162 ----VSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFV--------------VIGWTPIHYA 223 (316)
Q Consensus 162 ----~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~--------------~~~~t~l~~A 223 (316)
++..+..|.||||+|+..|+.+ ++++|++.+. ..+..+ ..|.||||+|
T Consensus 82 ~~~~~~~~d~~g~t~L~~A~~~g~~~------------~v~~Ll~~ga--~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A 147 (260)
T 3jxi_A 82 INSPFRDVYYRGQTALHIAIERRCKH------------YVELLVEKGA--DVHAQARGRFFQPKDEGGYFYFGELPLSLA 147 (260)
T ss_dssp HTCCBCCSSEESBCHHHHHHHTTCHH------------HHHHHHHTTC--CTTCCCEECCCSSSCCCCSCCSCSSHHHHH
T ss_pred hcccccccccCCCCHHHHHHHcCCHH------------HHHHHHhCCC--CcCccccccccCcccccccccCCCCHHHHH
Confidence 3444558999999999999999 9999999998 566666 5799999999
Q ss_pred HhcCCHHHHHHHHh---cCCCCccccccCCCchHHHHHHhcCC---------HHHHHHHHhcCCC----------CCCCC
Q 040452 224 AYYDQYQLIHMLLK---RGSNCFKYCCQRSKMTALRLAAGQRH---------ARTVKTILSLNPE----------FNGEG 281 (316)
Q Consensus 224 ~~~~~~~~~~~Ll~---~~~~~~~~~~~~~~~t~l~~A~~~~~---------~~~v~~L~~~~~~----------~~~~g 281 (316)
+..|+.+++++|++ .|++ . +..+..|+||||+|+..++ .+++++|++.|++ .+..|
T Consensus 148 ~~~g~~~~v~~Ll~~~~~ga~-~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g 225 (260)
T 3jxi_A 148 ACTNQPHIVHYLTENGHKQAD-L-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDG 225 (260)
T ss_dssp HHTTCHHHHHHHHHCSSCCCC-T-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTS
T ss_pred HHcCCHHHHHHHHhccccCCC-C-cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCC
Confidence 99999999999999 8888 4 7889999999999999888 7999999999875 46789
Q ss_pred CChHHHHHHcCCHHHHHHHHhccccccCcc
Q 040452 282 DTPLPVAAKFGHFNIANVLIKREKLAQHED 311 (316)
Q Consensus 282 ~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~ 311 (316)
.|||++|+..|+.+++++|+++|+++....
T Consensus 226 ~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~ 255 (260)
T 3jxi_A 226 LSPLMMAAKTGKIGIFQHIIRREIADAAAH 255 (260)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHcCCHHHHHHHHHhCCCccccc
Confidence 999999999999999999999999876543
No 53
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.98 E-value=2.6e-32 Score=223.53 Aligned_cols=213 Identities=19% Similarity=0.186 Sum_probs=162.6
Q ss_pred CCCCchHHHHHHcCCCCcccccccc---cccccccccc----cccCcchhhhhhh---cccCcchHHHHHHHHhhchhhh
Q 040452 4 VSTHPNLFKAAAEGHADEPFKKDTR---SNEIRGLLTA----QAKNRIRHINIIS---QKSKTGSTKFMEEILEICPSVL 73 (316)
Q Consensus 4 ~~~~~~l~~A~~~g~~~~~~~~ll~---~~~~~~~~~~----~~~~t~L~~A~~~---~~g~~~i~~~L~~~~~~~~~~~ 73 (316)
.+..++|+.||+.|+.+ .++.|++ ..+.+....+ ..|.||||+| + ..|+.+++++|++......
T Consensus 3 ~~~~~~L~~A~~~g~~~-~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A--~~~~~~g~~~~v~~Ll~~g~~~~--- 76 (260)
T 3jxi_A 3 VFNRPILFDIVSRGSPD-GLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKA--LLNLSAGRNDTIPILLDIAEKTG--- 76 (260)
T ss_dssp CCCHHHHHHHHHHTCGG-GGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHH--HTSCBTTBCTHHHHHHHHHHHTT---
T ss_pred cchHHHHHHHHHhCCHH-HHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHH--HHHhhcCCHHHHHHHHHhccccc---
Confidence 45678999999999999 9999987 2333322222 4599999999 7 7899999999999844321
Q ss_pred hccChhhhhhHHHHHHhHhhhhC---CCCCCCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCC--------------CCC
Q 040452 74 HKSMPKAILRSTLLRNLAILIYC---PADDENNTALHEAVCHGNVQVVKILTGQDPDYPYSAN--------------NYG 136 (316)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~l~~~---~~d~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~--------------~~~ 136 (316)
.+. .++.. ..|..|.||||+|+..|+.+++++|++.|++++ ..+ ..|
T Consensus 77 ------------~~~---~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~~g 140 (260)
T 3jxi_A 77 ------------NMR---EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH-AQARGRFFQPKDEGGYFYFG 140 (260)
T ss_dssp ------------CHH---HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCEECCCSSSCCCCSCCSC
T ss_pred ------------chH---hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcC-ccccccccCcccccccccCC
Confidence 111 22222 234589999999999999999999999999976 444 579
Q ss_pred CchhHHHHhcCCHHHHHHHHh---CCCCCccCCCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCcccccc----
Q 040452 137 KTQLYLAAKGRYSEMVIELLE---NSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILK---- 209 (316)
Q Consensus 137 ~~~l~~a~~~~~~~~v~~Ll~---~g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~---- 209 (316)
.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++... ........++++|++.+.+...
T Consensus 141 ~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~---~~~~~~~~~v~~Ll~~ga~~~~~~~~ 217 (260)
T 3jxi_A 141 ELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTR---ENTKFVTKMYDLLLIKCAKLFPDTNL 217 (260)
T ss_dssp SSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSH---HHHHHHHHHHHHHHHHHHHHCTTCCG
T ss_pred CCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCch---hHHHHHHHHHHHHHHhCcccccccch
Confidence 999999999999999999999 999999999999999999998776210 0000001288888888872211
Q ss_pred -ccccccCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 040452 210 -PLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSN 241 (316)
Q Consensus 210 -~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~ 241 (316)
+..|..|.||||+|+..|+.+++++|+++|+.
T Consensus 218 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 218 EALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA 250 (260)
T ss_dssp GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence 55777788888888888888888888877665
No 54
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=1.4e-33 Score=238.46 Aligned_cols=242 Identities=17% Similarity=0.064 Sum_probs=166.7
Q ss_pred CCCchHHHHHHcCCCCcccccccccccccccccccccCcchhhhhhhcccCcchHHHHHHHHhhchhhhhccChhhhhhH
Q 040452 5 STHPNLFKAAAEGHADEPFKKDTRSNEIRGLLTAQAKNRIRHINIISQKSKTGSTKFMEEILEICPSVLHKSMPKAILRS 84 (316)
Q Consensus 5 ~~~~~l~~A~~~g~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~A~~~~~g~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~ 84 (316)
.+.++++ |+++ ++++|++ .++++ +.+++++| +......-- -..........+... .....
T Consensus 51 ~g~~~~~-----g~~~-~v~~Ll~-~g~~~------~~~~~~~a--~~~~~~~~~---~~~~~~~~~~~~~a~--~~~~~ 110 (327)
T 1sw6_A 51 SPVVNDN-----EQKM-KLEAFLQ-RLLFP------EIQEMPTS--LNNDSSNRN---SEGGSSNQQQQHVSF--DSLLQ 110 (327)
T ss_dssp CCCCCCH-----HHHH-HHHHHHH-HHHC------------------------------------------CH--HHHHH
T ss_pred CCCcccC-----chhH-HHHHHHH-hccCC------ccccchHh--hhccccccc---ccccCCccchhHHHH--HhhHH
Confidence 3455554 9999 9999998 66662 23456666 543100000 000000000000000 03445
Q ss_pred HHHHHhHhhhhCC------CCCCCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCC---HHHHHHH
Q 040452 85 TLLRNLAILIYCP------ADDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRY---SEMVIEL 155 (316)
Q Consensus 85 ~~~~~~~~l~~~~------~d~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~---~~~v~~L 155 (316)
++++ +|++.+ .|..|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..|+ .++++.|
T Consensus 111 ~~~~---~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n-~~d~~g~TpLh~A~~~g~~~~~~~~~~l 186 (327)
T 1sw6_A 111 EVND---AFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL-YGDNMGESCLVKAVKSVNNYDSGTFEAL 186 (327)
T ss_dssp HHHH---HCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-BCCTTCCCHHHHHHHSSHHHHTTCHHHH
T ss_pred HHHH---HHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHhcccccHHHHHHH
Confidence 5666 666653 46789999999999999999999999999976 788899999999999998 6788888
Q ss_pred HhCC-CCCccCCCCCCCHHHHHHH----hhccccccccCcccHHHHHHHHhcCcc------------------ccccccc
Q 040452 156 LENS-TSVSYEGPNGKTALHAAAM----HFYYGKCLVCSSENWVIIAASLLNNKV------------------IILKPLF 212 (316)
Q Consensus 156 l~~g-~~~~~~~~~~~t~L~~a~~----~~~~~~~~~~~~~~~~~~~~~Ll~~~~------------------~~~~~~~ 212 (316)
++.+ .+++.++..|.||||+|+. .++.+ ++++|++.+. ...++..
T Consensus 187 l~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~------------~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~ 254 (327)
T 1sw6_A 187 LDYLYPCLILEDSMNRTILHHIIITSGMTGCSA------------AAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDK 254 (327)
T ss_dssp HHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHH------------HHHHHHHHHHHHHHHGGGCCEEEC-----------
T ss_pred HHhhhccccCCCCCCCCHHHHHHHHccccccHH------------HHHHHHHHHHHHHhcccchHHHhhhhcccCCcccc
Confidence 8876 7799999999999999999 77888 9999987631 1267778
Q ss_pred cccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCCC---CCCCCCChHHHHH
Q 040452 213 VVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPE---FNGEGDTPLPVAA 289 (316)
Q Consensus 213 ~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~---~~~~g~t~l~~A~ 289 (316)
+..|.||||.|+. +++|++.+. +..+..|+||||+|+..|+.+++++|+++|++ .+..|+|||++|+
T Consensus 255 ~~~g~t~L~~a~~------~~~Ll~~~~----n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~ 324 (327)
T 1sw6_A 255 NGERKDSILENLD------LKWIIANML----NAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324 (327)
T ss_dssp -----CHHHHHCS------HHHHHHHTT----TCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred cccCCChhHHHHH------HHHHHHhCC----CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 8999999999986 899998843 56789999999999999999999999999999 6788999999998
Q ss_pred HcC
Q 040452 290 KFG 292 (316)
Q Consensus 290 ~~~ 292 (316)
++|
T Consensus 325 ~~g 327 (327)
T 1sw6_A 325 GLE 327 (327)
T ss_dssp C--
T ss_pred hcC
Confidence 764
No 55
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=2.5e-31 Score=219.39 Aligned_cols=188 Identities=18% Similarity=0.186 Sum_probs=168.9
Q ss_pred CCcHHhHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCC-CCccCCCCCCCHHHHHH--
Q 040452 102 NNTALHEAVCHGNVQVVKILTGQDPD-YPYSANNYGKTQLYLAAKGRYSEMVIELLENST-SVSYEGPNGKTALHAAA-- 177 (316)
Q Consensus 102 ~~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~-~~~~~~~~~~t~L~~a~-- 177 (316)
..+++|.|+..++.+.++.++..+.+ .....+..|.||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~ 155 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA 155 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence 46789999999999999999876433 123568889999999999999999999999997 99999999999999999
Q ss_pred ---HhhccccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchH
Q 040452 178 ---MHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTA 254 (316)
Q Consensus 178 ---~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~ 254 (316)
..++.+ ++++|+..+. .....+..|.||||+|+..|+.+++++|++.|++ . +..+..|.||
T Consensus 156 ~~~~~~~~~------------~v~~Ll~~g~--~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad-~-n~~d~~G~Tp 219 (276)
T 4hbd_A 156 TLKTQDDIE------------TVLQLFRLGN--INAKASQAGQTALMLAVSHGRVDVVKALLACEAD-V-NVQDDDGSTA 219 (276)
T ss_dssp CCCSHHHHH------------HHHHHHHHSC--TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-T-TCCCTTSCCH
T ss_pred HhhhhhhHH------------HHHHHHHcCC--CccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-C-CCCCCCCCCH
Confidence 556777 9999999987 6677788899999999999999999999999998 5 7889999999
Q ss_pred HHHHHhcCCHHHHHHHHh-cCCC---CCCCCCChHHHHHHcCCHHHHHHHHhccc
Q 040452 255 LRLAAGQRHARTVKTILS-LNPE---FNGEGDTPLPVAAKFGHFNIANVLIKREK 305 (316)
Q Consensus 255 l~~A~~~~~~~~v~~L~~-~~~~---~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~ 305 (316)
||+|+..|+.+++++|++ .|++ .+..|.|||++|+..|+.+++++|++++.
T Consensus 220 Lh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~ 274 (276)
T 4hbd_A 220 LMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN 274 (276)
T ss_dssp HHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred HHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence 999999999999999999 7887 66889999999999999999999998864
No 56
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=1.6e-30 Score=197.41 Aligned_cols=159 Identities=18% Similarity=0.175 Sum_probs=114.6
Q ss_pred CCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhh
Q 040452 101 ENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHF 180 (316)
Q Consensus 101 ~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~ 180 (316)
...|||+.|+..|+.+++++|++.+.+++ ..+..|.||||+|+. |+.+++++|++.|++++.++..|.||||+|+..+
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 81 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNVN-AQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG 81 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCTT-CCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCcc-ccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 35677888888888888888887777754 566677788887777 7778888888777777777777777777777777
Q ss_pred ccccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHh
Q 040452 181 YYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAG 260 (316)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~ 260 (316)
+.+ ++++|++.+. ..+..+..|.||||+|+..|+.+++++|++++++ ..+..+..|.|||++|+.
T Consensus 82 ~~~------------~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~g~t~l~~A~~ 146 (162)
T 1ihb_A 82 FLD------------TLQTLLEFQA--DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS-NVGHRNHKGDTACDLARL 146 (162)
T ss_dssp CHH------------HHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC-CTTCCCTTSCCHHHHHHH
T ss_pred CHH------------HHHHHHHcCC--CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCC-CCCCcCCCCCcHHHHHHH
Confidence 777 7777777776 5566667777777777777777777777777766 335566667777777777
Q ss_pred cCCHHHHHHHHhcCCC
Q 040452 261 QRHARTVKTILSLNPE 276 (316)
Q Consensus 261 ~~~~~~v~~L~~~~~~ 276 (316)
.|+.+++++|+++|++
T Consensus 147 ~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 147 YGRNEVVSLMQANGAG 162 (162)
T ss_dssp TTCHHHHHHHHHTC--
T ss_pred cCCHHHHHHHHHhCCC
Confidence 7777777777766653
No 57
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=1.1e-30 Score=200.33 Aligned_cols=159 Identities=21% Similarity=0.198 Sum_probs=118.5
Q ss_pred CCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhhc
Q 040452 102 NNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFY 181 (316)
Q Consensus 102 ~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~ 181 (316)
+.||||.|+..|+.+++++|+..++......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence 35778888888888888888887776555667778888888888888888888888888888777778888888887777
Q ss_pred cccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhc
Q 040452 182 YGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQ 261 (316)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~ 261 (316)
.+ ++++|++.+. ..+..+..|.||||+|+..|+.+++++|++.|++ . +..+..|.|||++|+..
T Consensus 82 ~~------------~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~-~~~~~~g~t~l~~A~~~ 145 (172)
T 3v30_A 82 TD------------IVGLLLERDV--DINIYDWNGGTPLLYAVRGNHVKCVEALLARGAD-L-TTEADSGYTPMDLAVAL 145 (172)
T ss_dssp HH------------HHHHHHTTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-T-TCCCTTSCCHHHHHHHH
T ss_pred HH------------HHHHHHHcCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-c-cccCCCCCCHHHHHHHh
Confidence 77 7777777776 5666667777777777777777777777777766 3 55666677777777777
Q ss_pred CCHHHHHHHHhcCCC
Q 040452 262 RHARTVKTILSLNPE 276 (316)
Q Consensus 262 ~~~~~v~~L~~~~~~ 276 (316)
|+.+++++|++++++
T Consensus 146 ~~~~~~~~L~~~~~~ 160 (172)
T 3v30_A 146 GYRKVQQVIENHILK 160 (172)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 777777777766655
No 58
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=2.8e-30 Score=197.16 Aligned_cols=158 Identities=18% Similarity=0.125 Sum_probs=96.6
Q ss_pred CCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCcccccccccccc
Q 040452 136 GKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVI 215 (316)
Q Consensus 136 ~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~ 215 (316)
|.||||.|+..|+.+++++|++.|.+++..+..|.||||+|+..++.+ ++++|++.+. ..+..+..
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~------------~v~~Ll~~g~--~~~~~~~~ 68 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIA------------VVEFLLQNGA--DPQLLGKG 68 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHH------------HHHHHHHTTC--CTTCCCTT
T ss_pred CcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHH------------HHHHHHHcCC--CCCCcCCC
Confidence 455666666666666666666555555555556666666666655555 6666665555 44455555
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCCC---CCCCCCChHHHHHHcC
Q 040452 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPE---FNGEGDTPLPVAAKFG 292 (316)
Q Consensus 216 ~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~---~~~~g~t~l~~A~~~~ 292 (316)
|.||||.|+..|+.+++++|++.+++ . +..+..|.||||+|+..|+.+++++|++.|++ .+..|.|||++|+..|
T Consensus 69 g~t~L~~A~~~~~~~~v~~Ll~~g~~-~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 146 (167)
T 3v31_A 69 RESALSLACSKGYTDIVKMLLDCGVD-V-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 146 (167)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCC-T-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCC-C-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 66666666666666666666666655 3 45556666666666666666666666666665 3455666666666666
Q ss_pred CHHHHHHHHhccccccC
Q 040452 293 HFNIANVLIKREKLAQH 309 (316)
Q Consensus 293 ~~~~~~~Ll~~g~~~~~ 309 (316)
+.+++++|++++++...
T Consensus 147 ~~~~~~~L~~~~~~~~~ 163 (167)
T 3v31_A 147 YRSVQQVIESHLLKLLQ 163 (167)
T ss_dssp CHHHHHHHHHHHHHHCS
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 66666666666655443
No 59
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=1.4e-30 Score=197.86 Aligned_cols=155 Identities=24% Similarity=0.201 Sum_probs=144.4
Q ss_pred CCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCccccccccccc
Q 040452 135 YGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVV 214 (316)
Q Consensus 135 ~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~ 214 (316)
...+||+.|+..|+.+++++|++.|++++..+..|.||||+|+. ++.+ ++++|++.+. ..+..+.
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~------------~v~~Ll~~g~--~~~~~~~ 68 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPE------------IARRLLLRGA--NPDLKDR 68 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHH------------HHHHHHHTTC--CTTCCCT
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHH------------HHHHHHHcCC--CCCCCCC
Confidence 35799999999999999999999999999999999999999998 9999 9999999988 6788899
Q ss_pred cCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCCC----CCCCCCChHHHHHH
Q 040452 215 IGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPE----FNGEGDTPLPVAAK 290 (316)
Q Consensus 215 ~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~----~~~~g~t~l~~A~~ 290 (316)
.|.||||.|+..|+.+++++|+++|++ . +..+..|.||||+|+..|+.+++++|++.|++ .+..|.|||++|+.
T Consensus 69 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~ 146 (162)
T 1ihb_A 69 TGFAVIHDAARAGFLDTLQTLLEFQAD-V-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARL 146 (162)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHTTCC-T-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCC-C-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHH
Confidence 999999999999999999999999988 4 77899999999999999999999999999986 56789999999999
Q ss_pred cCCHHHHHHHHhcccc
Q 040452 291 FGHFNIANVLIKREKL 306 (316)
Q Consensus 291 ~~~~~~~~~Ll~~g~~ 306 (316)
.|+.+++++|+++||+
T Consensus 147 ~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 147 YGRNEVVSLMQANGAG 162 (162)
T ss_dssp TTCHHHHHHHHHTC--
T ss_pred cCCHHHHHHHHHhCCC
Confidence 9999999999999986
No 60
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.97 E-value=5.3e-30 Score=195.98 Aligned_cols=153 Identities=27% Similarity=0.315 Sum_probs=81.7
Q ss_pred CCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCcccccccccccc
Q 040452 136 GKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVI 215 (316)
Q Consensus 136 ~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~ 215 (316)
+.++|+.|++.|+.+++++|+++|++++..+..|.||||+|+..++.+ ++++|++.+. ..+..+..
T Consensus 14 ~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~------------~v~~Ll~~g~--~~~~~~~~ 79 (169)
T 2y1l_E 14 LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLE------------IVEVLLKNGA--DVNAVDHA 79 (169)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH------------HHHHHHHTTC--CTTCCCTT
T ss_pred ccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHH------------HHHHHHHcCC--CCCccCCC
Confidence 445555555555555555555555555555555555555555555555 5555555544 34444555
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCCC---CCCCCCChHHHHHHcC
Q 040452 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPE---FNGEGDTPLPVAAKFG 292 (316)
Q Consensus 216 ~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~---~~~~g~t~l~~A~~~~ 292 (316)
|.||||.|+..|+.+++++|+++|++ . +..+..|.||||+|+..|+.+++++|+++|++ .+..|.|||++|+..|
T Consensus 80 g~t~L~~A~~~~~~~~~~~Ll~~g~~-~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 157 (169)
T 2y1l_E 80 GMTPLRLAALFGHLEIVEVLLKNGAD-V-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNG 157 (169)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCC-T-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCC-C-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhC
Confidence 55555555555555555555555554 2 34455555555555555555555555555554 3345555555555555
Q ss_pred CHHHHHHHHhcc
Q 040452 293 HFNIANVLIKRE 304 (316)
Q Consensus 293 ~~~~~~~Ll~~g 304 (316)
+.+++++|++.|
T Consensus 158 ~~~~~~~L~~~G 169 (169)
T 2y1l_E 158 NEDLAEILQKLN 169 (169)
T ss_dssp CHHHHHHHHTC-
T ss_pred CHHHHHHHHHcC
Confidence 555555555544
No 61
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=2e-30 Score=202.52 Aligned_cols=161 Identities=21% Similarity=0.178 Sum_probs=110.5
Q ss_pred CCCCCCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHH
Q 040452 97 PADDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAA 176 (316)
Q Consensus 97 ~~d~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a 176 (316)
..|..|.||||+|+..|+.+++++|++.+.++. ..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|
T Consensus 30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 108 (192)
T 2rfm_A 30 YRDSYNRTPLMVACMLGMENAIDKLVENFDKLE-DKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWS 108 (192)
T ss_dssp CCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHhccccc-cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence 345667777777777777777777777666643 5566677777777777777777777777777777777777777777
Q ss_pred HHhhccccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHH
Q 040452 177 AMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALR 256 (316)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~ 256 (316)
+..++.+ ++++|++.+. ..+..+..|.||||+|+..|+.+++++|+++|++ . +..+..|.||++
T Consensus 109 ~~~~~~~------------~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~-~~~~~~g~t~l~ 172 (192)
T 2rfm_A 109 IIFGYSE------------MSYFLLEHGA--NVNDRNLEGETPLIVASKYGRSEIVKKLLELGAD-I-SARDLTGLTAEA 172 (192)
T ss_dssp HHHTCHH------------HHHHHHHTTC--CSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-T-TCBCTTSCBHHH
T ss_pred HHcCCHH------------HHHHHHHCCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-C-CCcCCCCCCHHH
Confidence 7777666 7777777666 5556666677777777777777777777766666 3 555666666666
Q ss_pred HHHhcCCHHHHHHHHhcC
Q 040452 257 LAAGQRHARTVKTILSLN 274 (316)
Q Consensus 257 ~A~~~~~~~~v~~L~~~~ 274 (316)
+|+..|+.+++++|++.+
T Consensus 173 ~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 173 SARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHhcc
Confidence 666666666666666543
No 62
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=3.6e-30 Score=201.12 Aligned_cols=159 Identities=23% Similarity=0.249 Sum_probs=150.1
Q ss_pred CCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCccccccc
Q 040452 131 SANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKP 210 (316)
Q Consensus 131 ~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~ 210 (316)
..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+ ++++|++.+. ..+
T Consensus 30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~------------~v~~Ll~~g~--~~~ 95 (192)
T 2rfm_A 30 YRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLG------------IAEKLLSKGS--NVN 95 (192)
T ss_dssp CCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHH------------HHHHHHHHTC--CTT
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHH------------HHHHHHHCCC--CCC
Confidence 45778999999999999999999999999999999999999999999999999 9999999988 678
Q ss_pred cccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCCC---CCCCCCChHHH
Q 040452 211 LFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPE---FNGEGDTPLPV 287 (316)
Q Consensus 211 ~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~---~~~~g~t~l~~ 287 (316)
..+..|.||||+|+..|+.+++++|+++|++ . +..+..|.||||+|+..|+.+++++|++.|++ .+..|.|||++
T Consensus 96 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~ 173 (192)
T 2rfm_A 96 TKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN-V-NDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEAS 173 (192)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-S-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHH
T ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC-C-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence 8899999999999999999999999999998 4 77889999999999999999999999999998 56789999999
Q ss_pred HHHcCCHHHHHHHHhccc
Q 040452 288 AAKFGHFNIANVLIKREK 305 (316)
Q Consensus 288 A~~~~~~~~~~~Ll~~g~ 305 (316)
|+..|+.+++++|+++|.
T Consensus 174 A~~~~~~~~v~~Ll~~~~ 191 (192)
T 2rfm_A 174 ARIFGRQEVIKIFTEVRR 191 (192)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHhccC
Confidence 999999999999998863
No 63
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=3.9e-30 Score=212.21 Aligned_cols=193 Identities=22% Similarity=0.154 Sum_probs=167.6
Q ss_pred cCcchhhhhhhcccCcchHHHHHHHHhhchhhhhccChhhhhhHHHHHHhHhhhhCCCCCCCCcHHhHHHHcCCHHHHHH
Q 040452 41 KNRIRHINIISQKSKTGSTKFMEEILEICPSVLHKSMPKAILRSTLLRNLAILIYCPADDENNTALHEAVCHGNVQVVKI 120 (316)
Q Consensus 41 ~~t~L~~A~~~~~g~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~t~l~~A~~~~~~~~~~~ 120 (316)
+.+++|.| +..|+.+.++.++..... +.+ ...|..|.||||+|+..|+.+++++
T Consensus 76 ~~~~l~~a--~~~~~~~~~~~l~~~~~~-----------------------~~~-n~~d~~g~T~Lh~A~~~g~~~~v~~ 129 (276)
T 4hbd_A 76 CRSDAHPE--LVRRHLVTFRAMSARLLD-----------------------YVV-NIADSNGNTALHYSVSHANFPVVQQ 129 (276)
T ss_dssp HSTTCCHH--HHHHHHHHHHHHCHHHHH-----------------------HHH-TCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred hccCCCHH--HHHHHHHHHHHHHHHHHh-----------------------hcC-cCCCCCCCCHHHHHHHCCCHHHHHH
Confidence 45666777 777777776666654110 111 2457899999999999999999999
Q ss_pred HHhCCCCCCCCCCCCCCchhHHHH-----hcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhhccccccccCcccHHH
Q 040452 121 LTGQDPDYPYSANNYGKTQLYLAA-----KGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVI 195 (316)
Q Consensus 121 Ll~~~~~~~~~~~~~~~~~l~~a~-----~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~ 195 (316)
|++.|+......+..|.||||+|+ ..++.+++++|++.|..++..+..|.||||+|+..|+.+
T Consensus 130 Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~------------ 197 (276)
T 4hbd_A 130 LLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVD------------ 197 (276)
T ss_dssp HHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHH------------
T ss_pred HHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHH------------
Confidence 999998434578899999999999 668899999999999999999999999999999999999
Q ss_pred HHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHh-cCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcC
Q 040452 196 IAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLK-RGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLN 274 (316)
Q Consensus 196 ~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~ 274 (316)
++++|++.+. +.+..|..|.||||+|+..|+.+++++|++ .|++ . +..+..|.|||++|+..|+.+++++|++++
T Consensus 198 ~v~~Ll~~ga--d~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad-~-~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 198 VVKALLACEA--DVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCD-I-SLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp HHHHHHHTTC--CTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCC-T-TCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHhCCC--CCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-C-cCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 9999999998 788899999999999999999999999999 7887 4 788999999999999999999999999875
Q ss_pred C
Q 040452 275 P 275 (316)
Q Consensus 275 ~ 275 (316)
.
T Consensus 274 ~ 274 (276)
T 4hbd_A 274 N 274 (276)
T ss_dssp C
T ss_pred C
Confidence 3
No 64
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.97 E-value=1.2e-29 Score=193.93 Aligned_cols=159 Identities=27% Similarity=0.305 Sum_probs=148.1
Q ss_pred CCCCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHH
Q 040452 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAM 178 (316)
Q Consensus 99 d~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~ 178 (316)
...+.++|+.|+..|+.+++++|++.+.+++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 89 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANGADVN-AEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAAL 89 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence 3556889999999999999999999999875 678889999999999999999999999999999999999999999999
Q ss_pred hhccccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHH
Q 040452 179 HFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLA 258 (316)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A 258 (316)
.++.+ ++++|++.+. ..+..|..|.||||+|+..|+.+++++|+++|++ . +..+..|.||+++|
T Consensus 90 ~~~~~------------~~~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~-~~~~~~g~t~l~~A 153 (169)
T 2y1l_E 90 FGHLE------------IVEVLLKNGA--DVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD-V-NAQDKFGKTAFDIS 153 (169)
T ss_dssp TTCHH------------HHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-T-TCCCTTSCCHHHHH
T ss_pred cCCHH------------HHHHHHHcCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-C-CCcCCCCCCHHHHH
Confidence 99999 9999999998 6788899999999999999999999999999998 4 77889999999999
Q ss_pred HhcCCHHHHHHHHhcC
Q 040452 259 AGQRHARTVKTILSLN 274 (316)
Q Consensus 259 ~~~~~~~~v~~L~~~~ 274 (316)
+..|+.+++++|++.|
T Consensus 154 ~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 154 IDNGNEDLAEILQKLN 169 (169)
T ss_dssp HHTTCHHHHHHHHTC-
T ss_pred HHhCCHHHHHHHHHcC
Confidence 9999999999999875
No 65
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=7.2e-30 Score=195.83 Aligned_cols=164 Identities=16% Similarity=0.101 Sum_probs=148.9
Q ss_pred CCchhHHHHhcCCHHHHHHHHhCCCC-CccCCCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCccccccccccc
Q 040452 136 GKTQLYLAAKGRYSEMVIELLENSTS-VSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVV 214 (316)
Q Consensus 136 ~~~~l~~a~~~~~~~~v~~Ll~~g~~-~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~ 214 (316)
+.+|||.|+..|+.+++++|++.+.. ++..+..|.||||+|+..++.+ ++++|++.+. ..+..+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~------------~v~~Ll~~g~--~~~~~~~ 67 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIE------------TVRFLLEWGA--DPHILAK 67 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHH------------HHHHHHHHTC--CTTCCCT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHH------------HHHHHHHcCC--Cchhhcc
Confidence 46899999999999999999999977 7888999999999999999999 9999999988 6788899
Q ss_pred cCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCCC---CCCCCCChHHHHHHc
Q 040452 215 IGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPE---FNGEGDTPLPVAAKF 291 (316)
Q Consensus 215 ~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~---~~~~g~t~l~~A~~~ 291 (316)
.|.||||+|+..|+.+++++|++++++ . +..+..|.||||+|+..|+.+++++|++.|++ .+..|.|||++|+..
T Consensus 68 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~ 145 (172)
T 3v30_A 68 ERESALSLASTGGYTDIVGLLLERDVD-I-NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVAL 145 (172)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHTTTCC-T-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred cCCCHHHHHHHCCCHHHHHHHHHcCCC-C-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHh
Confidence 999999999999999999999999998 4 77889999999999999999999999999998 567899999999999
Q ss_pred CCHHHHHHHHhccccccCcccccc
Q 040452 292 GHFNIANVLIKREKLAQHEDEELE 315 (316)
Q Consensus 292 ~~~~~~~~Ll~~g~~~~~~~~~~~ 315 (316)
|+.+++++|+++|++....+..+.
T Consensus 146 ~~~~~~~~L~~~~~~~~~~~~~~~ 169 (172)
T 3v30_A 146 GYRKVQQVIENHILKLFQSNLVPA 169 (172)
T ss_dssp TCHHHHHHHHHHHHHHSCC-----
T ss_pred CcHHHHHHHHHHHHHHhcccCCCC
Confidence 999999999999999887766543
No 66
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=1.2e-29 Score=193.63 Aligned_cols=159 Identities=23% Similarity=0.195 Sum_probs=149.7
Q ss_pred CCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhh
Q 040452 101 ENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHF 180 (316)
Q Consensus 101 ~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~ 180 (316)
.|.||||.|+..|+.+++++|++.+.+++ ..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 80 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVIN-HTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG 80 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcC-CCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence 57899999999999999999999998854 77889999999999999999999999999999999999999999999999
Q ss_pred ccccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHh
Q 040452 181 YYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAG 260 (316)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~ 260 (316)
+.+ ++++|++.+. ..+..|..|.||||+|+..|+.+++++|+++|++ . +..+..|.||+++|+.
T Consensus 81 ~~~------------~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~-~~~~~~g~t~l~~A~~ 144 (167)
T 3v31_A 81 YTD------------IVKMLLDCGV--DVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD-P-TIETDSGYNSMDLAVA 144 (167)
T ss_dssp CHH------------HHHHHHHHTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-T-TCCCTTSCCHHHHHHH
T ss_pred CHH------------HHHHHHHCCC--CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-C-CCcCCCCCCHHHHHHH
Confidence 999 9999999988 6788899999999999999999999999999998 4 7789999999999999
Q ss_pred cCCHHHHHHHHhcCCC
Q 040452 261 QRHARTVKTILSLNPE 276 (316)
Q Consensus 261 ~~~~~~v~~L~~~~~~ 276 (316)
.|+.+++++|++++..
T Consensus 145 ~~~~~~~~~L~~~~~~ 160 (167)
T 3v31_A 145 LGYRSVQQVIESHLLK 160 (167)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHH
Confidence 9999999999988654
No 67
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=4.2e-29 Score=187.75 Aligned_cols=151 Identities=21% Similarity=0.200 Sum_probs=130.9
Q ss_pred CCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhhc
Q 040452 102 NNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFY 181 (316)
Q Consensus 102 ~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~ 181 (316)
..++|+.|+..|+.+++++|++.+.+.. .+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 79 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH 79 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCh
Confidence 3578999999999999999999888754 57778999999999999999999999999998888899999999999888
Q ss_pred cccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhc
Q 040452 182 YGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQ 261 (316)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~ 261 (316)
.+ ++++|++.+. ..+..|..|.||||+|+..|+.+++++|+++|++ . +..+..|.||+++|+..
T Consensus 80 ~~------------~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~-~~~~~~g~t~l~~A~~~ 143 (153)
T 1awc_B 80 AN------------IVEVLLKHGA--DVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD-V-HTQSKFCKTAFDISIDN 143 (153)
T ss_dssp HH------------HHHHHHTTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-T-TCCCTTSCCHHHHHHHT
T ss_pred HH------------HHHHHHHcCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-c-cccCCCCCCHHHHHHHc
Confidence 88 9999998887 6777788888999999998999999999988887 4 66788888888888888
Q ss_pred CCHHHHHHH
Q 040452 262 RHARTVKTI 270 (316)
Q Consensus 262 ~~~~~v~~L 270 (316)
|+.+++++|
T Consensus 144 ~~~~i~~~L 152 (153)
T 1awc_B 144 GNEDLAEIL 152 (153)
T ss_dssp TCHHHHHHH
T ss_pred CCHHHHHHh
Confidence 888888876
No 68
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=1.4e-29 Score=192.84 Aligned_cols=160 Identities=23% Similarity=0.231 Sum_probs=111.2
Q ss_pred CCCCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHH
Q 040452 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAM 178 (316)
Q Consensus 99 d~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~ 178 (316)
+.++.|+|+.|+..|+.+++++|++.++......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 84 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACS 84 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence 45567788888888888888888876554444566667788888888888888888888888777777777777777777
Q ss_pred hhccccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHH
Q 040452 179 HFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLA 258 (316)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A 258 (316)
.++.+ ++++|++.+. ..+..|..|.||||+|+..|+.+++++|+++|++ . +..+..|.||+++|
T Consensus 85 ~~~~~------------~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~-~~~~~~g~t~l~~a 148 (165)
T 3twr_A 85 YGHYE------------VAELLVKHGA--VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-P-TKKNRDGNTPLDLV 148 (165)
T ss_dssp TTCHH------------HHHHHHHTTC--CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-T-TCCCTTSCCTGGGS
T ss_pred cCcHH------------HHHHHHhCCC--CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-C-cccCCCCCChhHhH
Confidence 77777 7777777766 5556666666777777777777777777666665 3 45566666666665
Q ss_pred HhcCCHHHHHHHHhcCC
Q 040452 259 AGQRHARTVKTILSLNP 275 (316)
Q Consensus 259 ~~~~~~~~v~~L~~~~~ 275 (316)
+. ++.+++++|++.|+
T Consensus 149 ~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 149 KD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp CT-TCHHHHHHHHTC--
T ss_pred hc-CChHHHHHHhhccc
Confidence 44 66666666665553
No 69
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=3.2e-29 Score=193.47 Aligned_cols=161 Identities=15% Similarity=0.116 Sum_probs=81.9
Q ss_pred CCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhhc
Q 040452 102 NNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFY 181 (316)
Q Consensus 102 ~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~ 181 (316)
+.++|+.|+..|+.+++++|++.++......+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..+
T Consensus 5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~- 83 (179)
T 3f6q_A 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG- 83 (179)
T ss_dssp --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT-
T ss_pred HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC-
Confidence 4455555555555555555555433323344445555555555555555555555555555555555555555555544
Q ss_pred cccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhc
Q 040452 182 YGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQ 261 (316)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~ 261 (316)
+.+++++|+++|++ . +..+..|.||||+|+..
T Consensus 84 ----------------------------------------------~~~~v~~Ll~~g~~-~-~~~d~~g~t~L~~A~~~ 115 (179)
T 3f6q_A 84 ----------------------------------------------HRDIVQKLLQYKAD-I-NAVNEHGNVPLHYACFW 115 (179)
T ss_dssp ----------------------------------------------CHHHHHHHHHTTCC-T-TCCCTTSCCHHHHHHHT
T ss_pred ----------------------------------------------CHHHHHHHHHcCCC-C-CccCCCCCCHHHHHHHc
Confidence 44444444444444 2 34444555555555555
Q ss_pred CCHHHHHHHHhcCCC---CCCCCCChHHHHHHcCCHHHHHHHHhccccccCcc
Q 040452 262 RHARTVKTILSLNPE---FNGEGDTPLPVAAKFGHFNIANVLIKREKLAQHED 311 (316)
Q Consensus 262 ~~~~~v~~L~~~~~~---~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~ 311 (316)
|+.+++++|++.|++ .+..|.|||++|+..++.+++++|+++|++++..+
T Consensus 116 ~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~ 168 (179)
T 3f6q_A 116 GQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIP 168 (179)
T ss_dssp TCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSCBC
T ss_pred CCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcccCC
Confidence 555555555555554 33455555555555555555555555555555443
No 70
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=2e-28 Score=184.63 Aligned_cols=154 Identities=22% Similarity=0.244 Sum_probs=127.1
Q ss_pred CCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhhc
Q 040452 102 NNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFY 181 (316)
Q Consensus 102 ~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~ 181 (316)
+.|||+.|+..|+.+++++|++.........+..|.||||+ +..|+.+++++|++.|++++.++..|.||||+|+..|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 80 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF 80 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence 46789999999999999999887322344677788999999 88889999999999998888888888888888888888
Q ss_pred cccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhc
Q 040452 182 YGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQ 261 (316)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~ 261 (316)
.+ ++++|++.+. ..+..|..|.||||+|+..|+.+++++|++. ++ . +..+..|.|||++|+..
T Consensus 81 ~~------------~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~-~-~~~~~~g~t~l~~A~~~ 143 (156)
T 1bd8_A 81 LD------------TLKVLVEHGA--DVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD-L-HRRDARGLTPLELALQR 143 (156)
T ss_dssp HH------------HHHHHHHTTC--CSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC-T-TCCCTTSCCHHHHHHHS
T ss_pred HH------------HHHHHHHcCC--CCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC-C-CCcCCCCCCHHHHHHHc
Confidence 88 8888888887 6677788888888888888888888888887 55 3 67777888888888888
Q ss_pred CCHHHHHHHHhc
Q 040452 262 RHARTVKTILSL 273 (316)
Q Consensus 262 ~~~~~v~~L~~~ 273 (316)
|+.+++++|+++
T Consensus 144 ~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 144 GAQDLVDILQGH 155 (156)
T ss_dssp CCHHHHHHHHTT
T ss_pred CcHHHHHHHHhh
Confidence 888888888764
No 71
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=5.7e-29 Score=189.47 Aligned_cols=158 Identities=27% Similarity=0.272 Sum_probs=142.8
Q ss_pred CCCCCCchhHHHHhcCCHHHHHHHHhC-CCCCccCCCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCccccccc
Q 040452 132 ANNYGKTQLYLAAKGRYSEMVIELLEN-STSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKP 210 (316)
Q Consensus 132 ~~~~~~~~l~~a~~~~~~~~v~~Ll~~-g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~ 210 (316)
.+..+.+||+.|++.|+.+++++|++. +.+++..+..|.||||+|+..++.+ ++++|++.+. ..+
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~------------~v~~Ll~~g~--~~~ 69 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVS------------VVEYLLQHGA--DVH 69 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHH------------HHHHHHHTTC--CTT
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHH------------HHHHHHhcCC--CCC
Confidence 456689999999999999999999984 5677788889999999999999999 9999999998 778
Q ss_pred cccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCCC---CCCCCCChHHH
Q 040452 211 LFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPE---FNGEGDTPLPV 287 (316)
Q Consensus 211 ~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~---~~~~g~t~l~~ 287 (316)
..+..|.||||+|+..|+.+++++|++.+++ . +..+..|.||||+|+..|+.+++++|++.|++ .+..|.|||++
T Consensus 70 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~ 147 (165)
T 3twr_A 70 AKDKGGLVPLHNACSYGHYEVAELLVKHGAV-V-NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 147 (165)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-T-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGG
T ss_pred ccCCCCCCHHHHHHHcCcHHHHHHHHhCCCC-C-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHh
Confidence 8899999999999999999999999999998 4 77889999999999999999999999999998 67889999999
Q ss_pred HHHcCCHHHHHHHHhcccc
Q 040452 288 AAKFGHFNIANVLIKREKL 306 (316)
Q Consensus 288 A~~~~~~~~~~~Ll~~g~~ 306 (316)
|+. ++.+++++|+++|+.
T Consensus 148 a~~-~~~~i~~~L~~~gAl 165 (165)
T 3twr_A 148 VKD-GDTDIQDLLRGDAAL 165 (165)
T ss_dssp SCT-TCHHHHHHHHTC---
T ss_pred Hhc-CChHHHHHHhhcccC
Confidence 877 899999999999973
No 72
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=9.4e-29 Score=190.85 Aligned_cols=143 Identities=24% Similarity=0.210 Sum_probs=132.8
Q ss_pred hhhHHHHHHhHhhhhCC------CCCCCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHH
Q 040452 81 ILRSTLLRNLAILIYCP------ADDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIE 154 (316)
Q Consensus 81 ~~~~~~~~~~~~l~~~~------~d~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ 154 (316)
.++.++++ +|++.. .+..|.||||+|+..++.+++++|++.+.+++ ..+..|.||||+|+..|+.+++++
T Consensus 15 ~g~~~~v~---~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~ 90 (179)
T 3f6q_A 15 EGNAVAVR---LWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN-VMNRGDDTPLHLAASHGHRDIVQK 90 (179)
T ss_dssp HTCHHHHH---HHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHH---HHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHH
Confidence 88999999 999872 36789999999999999999999999999965 678899999999999999999999
Q ss_pred HHhCCCCCccCCCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHH
Q 040452 155 LLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHM 234 (316)
Q Consensus 155 Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~ 234 (316)
|+++|++++..+..|.||||+|+..++.+ ++++|++.+. ..+..+..|.||+++|+..++.+++++
T Consensus 91 Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~------------~v~~Ll~~ga--~~~~~~~~g~tpl~~A~~~~~~~~~~~ 156 (179)
T 3f6q_A 91 LLQYKADINAVNEHGNVPLHYACFWGQDQ------------VAEDLVANGA--LVSICNKYGEMPVDKAKAPLRELLRER 156 (179)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHTTCHH------------HHHHHHHTTC--CSSBCCTTSCCGGGGSCHHHHHHHHHH
T ss_pred HHHcCCCCCccCCCCCCHHHHHHHcCCHH------------HHHHHHHCCC--CcchhccCCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 9999999998 678889999999999999999999999
Q ss_pred HHhcCCC
Q 040452 235 LLKRGSN 241 (316)
Q Consensus 235 Ll~~~~~ 241 (316)
|++.|++
T Consensus 157 L~~~g~~ 163 (179)
T 3f6q_A 157 AEKMGQN 163 (179)
T ss_dssp HHHTTCC
T ss_pred HHHhhcC
Confidence 9999988
No 73
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=2.5e-28 Score=183.56 Aligned_cols=148 Identities=24% Similarity=0.285 Sum_probs=138.8
Q ss_pred CCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCcccccccccccc
Q 040452 136 GKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVI 215 (316)
Q Consensus 136 ~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~ 215 (316)
..+||+.|+..|+.+++++|++.|++++ .+..|.||||+|+..++.+ ++++|++.+. ..+..+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~------------~v~~Ll~~g~--~~~~~~~~ 66 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFS------------TTEVLLRAGV--SRDARTKV 66 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHH------------HHHHHHTTTC--CTTCCCTT
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHH------------HHHHHHHcCC--CCCCCCCC
Confidence 3589999999999999999999999876 5888999999999999999 9999999988 67888999
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCCC---CCCCCCChHHHHHHcC
Q 040452 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPE---FNGEGDTPLPVAAKFG 292 (316)
Q Consensus 216 ~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~---~~~~g~t~l~~A~~~~ 292 (316)
|.||||.|+..|+.+++++|+++|++ . +..+..|.||||+|+..|+.+++++|++.|++ .+..|.|||++|+..|
T Consensus 67 g~t~L~~A~~~~~~~~v~~Ll~~g~~-~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~ 144 (153)
T 1awc_B 67 DRTPLHMAASEGHANIVEVLLKHGAD-V-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNG 144 (153)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHTTTCC-T-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred CCCHHHHHHHcChHHHHHHHHHcCCC-C-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence 99999999999999999999999998 4 77889999999999999999999999999998 5678999999999999
Q ss_pred CHHHHHHH
Q 040452 293 HFNIANVL 300 (316)
Q Consensus 293 ~~~~~~~L 300 (316)
+.+++++|
T Consensus 145 ~~~i~~~L 152 (153)
T 1awc_B 145 NEDLAEIL 152 (153)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHh
Confidence 99999997
No 74
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=6.6e-28 Score=181.79 Aligned_cols=150 Identities=23% Similarity=0.225 Sum_probs=139.9
Q ss_pred CCchhHHHHhcCCHHHHHHHHhC-CCCCccCCCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCccccccccccc
Q 040452 136 GKTQLYLAAKGRYSEMVIELLEN-STSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVV 214 (316)
Q Consensus 136 ~~~~l~~a~~~~~~~~v~~Ll~~-g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~ 214 (316)
+.+||+.|+..|+.+++++|++. +.+++..+..|.||||+ +..++.+ ++++|++.+. ..+..|.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~------------~v~~Ll~~g~--~~~~~~~ 66 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTA------------IALELLKQGA--SPNVQDT 66 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHH------------HHHHHHHTTC--CTTCCCT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHH------------HHHHHHHCCC--CCCCcCC
Confidence 46899999999999999999998 35899999999999999 8899999 9999999998 6788899
Q ss_pred cCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCCC---CCCCCCChHHHHHHc
Q 040452 215 IGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPE---FNGEGDTPLPVAAKF 291 (316)
Q Consensus 215 ~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~---~~~~g~t~l~~A~~~ 291 (316)
.|.||||+|+..|+.+++++|+++|++ . +..+..|.||||+|+..|+.+++++|++. ++ .+..|.|||++|+..
T Consensus 67 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~ 143 (156)
T 1bd8_A 67 SGTSPVHDAARTGFLDTLKVLVEHGAD-V-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQR 143 (156)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHTTCC-S-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHS
T ss_pred CCCCHHHHHHHcCcHHHHHHHHHcCCC-C-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHc
Confidence 999999999999999999999999988 4 77889999999999999999999999988 66 567899999999999
Q ss_pred CCHHHHHHHHhc
Q 040452 292 GHFNIANVLIKR 303 (316)
Q Consensus 292 ~~~~~~~~Ll~~ 303 (316)
|+.+++++|+++
T Consensus 144 ~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 144 GAQDLVDILQGH 155 (156)
T ss_dssp CCHHHHHHHHTT
T ss_pred CcHHHHHHHHhh
Confidence 999999999985
No 75
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=1.1e-31 Score=229.31 Aligned_cols=242 Identities=14% Similarity=0.105 Sum_probs=176.6
Q ss_pred hHHHHHH-cCCCCcccccccccccccccccccccCcchhhhhhhcccCcchHHHHHHHHhhchhhhhccChhhhhhHHHH
Q 040452 9 NLFKAAA-EGHADEPFKKDTRSNEIRGLLTAQAKNRIRHINIISQKSKTGSTKFMEEILEICPSVLHKSMPKAILRSTLL 87 (316)
Q Consensus 9 ~l~~A~~-~g~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~A~~~~~g~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (316)
+++.|+. .++.+ +++++++ .+.+ +.||||+| +..|+.+++++|++......
T Consensus 68 ~~~~a~~~~~~~~-~~~~l~~-~g~~-------~~T~Lh~A--a~~G~~e~v~~Ll~~ga~~~----------------- 119 (376)
T 2aja_A 68 CLYYAHYNRNAKQ-LWSDAHK-KGIK-------SEVICFVA--AITGCSSALDTLCLLLTSDE----------------- 119 (376)
T ss_dssp HHHHHHTTTTCTT-HHHHHHH-HTCC-------HHHHHHHH--HHHCCHHHHHHHTTC--CCS-----------------
T ss_pred HHHHHHhcCCCHH-HHHHHHH-cCCC-------cCCHHHHH--HHcCCHHHHHHHHHcCCcHH-----------------
Confidence 4555555 46667 7777776 4444 45888888 88888888888887532100
Q ss_pred HHhHhhhhCCCCCCCCcHHhHHHHcCCHHHHHHHHhCCCCCC--CCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCcc-
Q 040452 88 RNLAILIYCPADDENNTALHEAVCHGNVQVVKILTGQDPDYP--YSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSY- 164 (316)
Q Consensus 88 ~~~~~l~~~~~d~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~--~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~- 164 (316)
.....+..+.||||+|+..|+.+++++|++.|++.. ...... .||||+|+..|+.+++++|+++|++++.
T Consensus 120 ------~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~ 192 (376)
T 2aja_A 120 ------IVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATA 192 (376)
T ss_dssp ------SCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHH
T ss_pred ------HHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchh
Confidence 000112346789999999999999999999997421 112222 8999999999999999999999999877
Q ss_pred -CCCCCCCHHHHHH-HhhccccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCC
Q 040452 165 -EGPNGKTALHAAA-MHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNC 242 (316)
Q Consensus 165 -~~~~~~t~L~~a~-~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~ 242 (316)
.+..|.||||+|+ ..|+.+ ++++|++.+. .|.|||+.|+..|+.+++++|++++++
T Consensus 193 ~~d~~g~TpL~~Aa~~~G~~e------------iv~~Ll~~ga---------~~~taL~~Aa~~g~~evv~lL~~~ga~- 250 (376)
T 2aja_A 193 MIQAENYYAFRWAAVGRGHHN------------VINFLLDCPV---------MLAYAEIHEFEYGEKYVNPFIARHVNR- 250 (376)
T ss_dssp HHHHHHHHHHHHHHSTTCCHH------------HHHHHTTSHH---------HHHHHHHCTTTTTTTTHHHHHHHHHHH-
T ss_pred ccCCCCCCHHHHHHHHCCCHH------------HHHHHHhCCC---------ccchHHHHHHHCCCHHHHHHHHhcCcc-
Confidence 7888999999999 999999 9999999765 278999999999999999999998765
Q ss_pred ccccccCCCchHHHHHHhcC---------------------------CHHHHHHHHhcCCC--------CCCCCCChHHH
Q 040452 243 FKYCCQRSKMTALRLAAGQR---------------------------HARTVKTILSLNPE--------FNGEGDTPLPV 287 (316)
Q Consensus 243 ~~~~~~~~~~t~l~~A~~~~---------------------------~~~~v~~L~~~~~~--------~~~~g~t~l~~ 287 (316)
. +..+ ++++.|+..| ..+.+++|++.+.. ....+.|||++
T Consensus 251 ~-~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~ 325 (376)
T 2aja_A 251 L-KEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRL 325 (376)
T ss_dssp H-HHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHH
T ss_pred c-cccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHH
Confidence 2 2111 1233333333 34556666654321 12346789999
Q ss_pred HHHcCCHHHHHHHHhccccccCccc
Q 040452 288 AAKFGHFNIANVLIKREKLAQHEDE 312 (316)
Q Consensus 288 A~~~~~~~~~~~Ll~~g~~~~~~~~ 312 (316)
|+..|+.+++++|+++|...++..+
T Consensus 326 A~~~g~~e~v~lLl~~~~v~~~~~~ 350 (376)
T 2aja_A 326 ALRLGNQGACALLLSIPSVLALTKA 350 (376)
T ss_dssp HHHHTCTTHHHHHTTSHHHHHSCC-
T ss_pred HHHcCcHHHHHHHHcChHHHHHHHH
Confidence 9999999999999999877666544
No 76
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=6.4e-31 Score=210.74 Aligned_cols=183 Identities=18% Similarity=0.039 Sum_probs=162.1
Q ss_pred CCCCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHH
Q 040452 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAM 178 (316)
Q Consensus 99 d~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~ 178 (316)
+..+.||||+|+..|+.+++++|++.|.+++ ..+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+.
T Consensus 18 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~ 96 (229)
T 2vge_A 18 RLNPLVLLLDAALTGELEVVQQAVKEMNDPS-QPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAAS 96 (229)
T ss_dssp TSCHHHHHHHHHHHTCHHHHHHHHHHSSCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred ccchhHHHHHHHHcCCHHHHHHHHhcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence 4567889999999999999999999999865 688899999999999999999999999999999999999999999999
Q ss_pred hhccccccccCcccHHHHHHHHhcCcccccccccc-ccCCcHHHHH--HhcCCHHHHHHHHhcCCCCccccccCCCchHH
Q 040452 179 HFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFV-VIGWTPIHYA--AYYDQYQLIHMLLKRGSNCFKYCCQRSKMTAL 255 (316)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~-~~~~t~l~~A--~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l 255 (316)
.|+.+ ++++|++.+. ..+..+ ..|.|||++| +..|+.+++++|++.|++ . +..+..+.+|+
T Consensus 97 ~g~~~------------~v~~Ll~~ga--~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~-~-~~~~~~~~~~l 160 (229)
T 2vge_A 97 CNDTV------------ICMALVQHGA--AIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS-M-GLMNSGAVYAL 160 (229)
T ss_dssp TTCHH------------HHHHHHTTTC--CTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH-T-TTSGGGEEEES
T ss_pred cCCHH------------HHHHHHHcCC--CcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC-c-ccccCCchHHH
Confidence 99999 9999999998 566665 6999999999 999999999999999988 4 66788888998
Q ss_pred HHHHhcCCHHHHHHHHhcCCC-----CCCCCCChHHHHHHcCCHHHHHHHH
Q 040452 256 RLAAGQRHARTVKTILSLNPE-----FNGEGDTPLPVAAKFGHFNIANVLI 301 (316)
Q Consensus 256 ~~A~~~~~~~~v~~L~~~~~~-----~~~~g~t~l~~A~~~~~~~~~~~Ll 301 (316)
+.++..+.. ++|++.|++ .+..|.|||++|+..|+.++|+.++
T Consensus 161 ~~~~~~~~~---~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~ 208 (229)
T 2vge_A 161 WDYSAEFGD---ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY 208 (229)
T ss_dssp SCBCCSSTT---BCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred HHHhhcccc---ccCccccccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence 865555433 567888877 5788999999999999988887643
No 77
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=1.8e-31 Score=227.94 Aligned_cols=245 Identities=11% Similarity=-0.006 Sum_probs=163.1
Q ss_pred CCchHHHHHHcCCCCcccccccccccccc---cccccccCcchhhhhhhcccCcchHHHHHHHHhhchhhhhccChhhhh
Q 040452 6 THPNLFKAAAEGHADEPFKKDTRSNEIRG---LLTAQAKNRIRHINIISQKSKTGSTKFMEEILEICPSVLHKSMPKAIL 82 (316)
Q Consensus 6 ~~~~l~~A~~~g~~~~~~~~ll~~~~~~~---~~~~~~~~t~L~~A~~~~~g~~~i~~~L~~~~~~~~~~~~~~~~~~~~ 82 (316)
..||||.||+.|+.+ ++++|++ .+... ...+..|.||||+| +..|+.+++++|++..... .
T Consensus 92 ~~T~Lh~Aa~~G~~e-~v~~Ll~-~ga~~~~~~~~~~~~~tpL~~A--a~~G~~eiv~~Ll~~gad~------------~ 155 (376)
T 2aja_A 92 SEVICFVAAITGCSS-ALDTLCL-LLTSDEIVKVIQAENYQAFRLA--AENGHLHVLNRLCELAPTE------------I 155 (376)
T ss_dssp HHHHHHHHHHHCCHH-HHHHHTT-C--CCSSCC--CHHHHHHHHHH--HHTTCHHHHHHHHHSCTTT------------H
T ss_pred cCCHHHHHHHcCCHH-HHHHHHH-cCCcHHHHHHhccCCCCHHHHH--HHcCCHHHHHHHHhCCCCc------------c
Confidence 358999999999999 9999999 44421 01223478999999 9999999999999862100 0
Q ss_pred hHHHHHHhHhhhhCCCCCCCCcHHhHHHHcCCHHHHHHHHhCCCCCCC-CCCCCCCchhHHHH-hcCCHHHHHHHHhCCC
Q 040452 83 RSTLLRNLAILIYCPADDENNTALHEAVCHGNVQVVKILTGQDPDYPY-SANNYGKTQLYLAA-KGRYSEMVIELLENST 160 (316)
Q Consensus 83 ~~~~~~~~~~l~~~~~d~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~-~~~~~~~~~l~~a~-~~~~~~~v~~Ll~~g~ 160 (316)
..++-. .+ .||||+|+..|+.+++++|++.|+++.. ..+..|.||||+|+ ..|+.+++++|++.|+
T Consensus 156 ~~~i~~-----------~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga 223 (376)
T 2aja_A 156 MAMIQA-----------EN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV 223 (376)
T ss_dssp HHHHSH-----------HH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH
T ss_pred ccccCC-----------CC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC
Confidence 011111 12 7999999999999999999999988542 15667899999999 9999999999999774
Q ss_pred CCccCCCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhc--------------
Q 040452 161 SVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYY-------------- 226 (316)
Q Consensus 161 ~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~-------------- 226 (316)
.|.|||++|+..|+.+ ++++|++++. ..+..+ ++++.|+..
T Consensus 224 -------~~~taL~~Aa~~g~~e------------vv~lL~~~ga--~~~~~~----~~l~~A~~~g~~~vv~~~~~~~~ 278 (376)
T 2aja_A 224 -------MLAYAEIHEFEYGEKY------------VNPFIARHVN--RLKEMH----DAFKLSNPDGVFDLVTKSECLQG 278 (376)
T ss_dssp -------HHHHHHHCTTTTTTTT------------HHHHHHHHHH--HHHHHH----TTTTTTSSSSCCCCSSHHHHHHH
T ss_pred -------ccchHHHHHHHCCCHH------------HHHHHHhcCc--cccccc----HHHHHHHHCCChhhhcHHhhhhh
Confidence 2789999999999999 9999999876 222221 122222222
Q ss_pred -------------CCHHHHHHHHhcCCCCc---cccccCCCchHHHHHHhcCCHHHHHHHHhcCCCCCCCCCChHHHHHH
Q 040452 227 -------------DQYQLIHMLLKRGSNCF---KYCCQRSKMTALRLAAGQRHARTVKTILSLNPEFNGEGDTPLPVAAK 290 (316)
Q Consensus 227 -------------~~~~~~~~Ll~~~~~~~---~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~g~t~l~~A~~ 290 (316)
+..+.+++|++.+.... .......+.|||++|+..|+.+++++|++.|...+..++|++.+|..
T Consensus 279 ~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~~v~~~~~~~~~~~~~~ 358 (376)
T 2aja_A 279 FYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNYYINET 358 (376)
T ss_dssp HHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSHHHHHSCC---------
T ss_pred HHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcChHHHHHHHHhccccccc
Confidence 23566677776432100 01122356789999999999999999999887777889999999999
Q ss_pred cCCHHHHHHHHhc
Q 040452 291 FGHFNIANVLIKR 303 (316)
Q Consensus 291 ~~~~~~~~~Ll~~ 303 (316)
.|+.++++.-+++
T Consensus 359 ~~~~~~~~~~~~~ 371 (376)
T 2aja_A 359 GGRLDLRAVALEH 371 (376)
T ss_dssp -------------
T ss_pred cccccHHHHHHHH
Confidence 9999998876554
No 78
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.95 E-value=6.9e-29 Score=200.55 Aligned_cols=185 Identities=17% Similarity=0.136 Sum_probs=130.4
Q ss_pred CCCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHh
Q 040452 100 DENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMH 179 (316)
Q Consensus 100 ~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~ 179 (316)
..|.||||.|+..++.+.++.|++.|.++. .+..+.||||.|+..|+.+++++|++.|++++.++..|.||||+|+..
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~--~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~ 80 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVK--FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA 80 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcc--cCchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence 468999999999999999999999998875 346789999999999999999999999999999999999999999999
Q ss_pred hccccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCc-hHHHHH
Q 040452 180 FYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKM-TALRLA 258 (316)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~-t~l~~A 258 (316)
|+.+ ++++|++.+. ..+..|..|+||||+|+..|+.+++++|+++|++ . +..+..+. ||+|+|
T Consensus 81 g~~~------------~v~~Ll~~ga--~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~-~~~~~~~~~t~l~~a 144 (239)
T 1ycs_B 81 GHTE------------IVKFLVQFGV--NVNAADSDGWTPLHCAASCNNVQVCKFLVESGAA-V-FAMTYSDMQTAADKC 144 (239)
T ss_dssp TCHH------------HHHHHHHHTC--CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-T-TCCCSSSCCCHHHHC
T ss_pred CCHH------------HHHHHHHcCC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-c-ceecCCCCcchHHHH
Confidence 9999 9999999988 6788899999999999999999999999999998 5 56666665 999999
Q ss_pred --HhcCCHHHHHHHHhcCCCC------------CCCCCChHHHHHHcCCHHHHHHHHhcc
Q 040452 259 --AGQRHARTVKTILSLNPEF------------NGEGDTPLPVAAKFGHFNIANVLIKRE 304 (316)
Q Consensus 259 --~~~~~~~~v~~L~~~~~~~------------~~~g~t~l~~A~~~~~~~~~~~Ll~~g 304 (316)
+..|+.+++++|++.+++. +..+.++++++.+.|. +++.|.+.+
T Consensus 145 ~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~ 202 (239)
T 1ycs_B 145 EEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHRED 202 (239)
T ss_dssp CSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCT
T ss_pred HHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEecC
Confidence 7889999999999988762 4567888888877775 444444443
No 79
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.95 E-value=4.1e-28 Score=196.01 Aligned_cols=163 Identities=13% Similarity=0.116 Sum_probs=118.9
Q ss_pred CCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCcccccccccc
Q 040452 134 NYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFV 213 (316)
Q Consensus 134 ~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~ 213 (316)
..|.||||.|++.++.+.++.|+++|++++.. ..+.||||.|+..|+.+ ++++|++.+. ..+..|
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~------------~v~~Ll~~g~--~~~~~d 67 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFD------------LVQRIIYEVD--DPSLPN 67 (239)
T ss_dssp -----------------------------------CHHHHHHHHHHTCHH------------HHHHHTSTTS--SCCCCC
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHH------------HHHHHHHcCC--CCCCcC
Confidence 45899999999999999999999999999864 77899999999999999 9999999998 778889
Q ss_pred ccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCCC---CCCCCC-ChHHHH-
Q 040452 214 VIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPE---FNGEGD-TPLPVA- 288 (316)
Q Consensus 214 ~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~---~~~~g~-t~l~~A- 288 (316)
..|.||||+|+..|+.+++++|+++|++ . +..+..|.||||+|+..|+.+++++|++.|++ .+..|. |||++|
T Consensus 68 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~ 145 (239)
T 1ycs_B 68 DEGITALHNAVCAGHTEIVKFLVQFGVN-V-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCE 145 (239)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHHTCC-T-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCC-C-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHH
Confidence 9999999999999999999999999998 5 78899999999999999999999999999999 344454 999999
Q ss_pred -HHcCCHHHHHHHHhccccccCcccc
Q 040452 289 -AKFGHFNIANVLIKREKLAQHEDEE 313 (316)
Q Consensus 289 -~~~~~~~~~~~Ll~~g~~~~~~~~~ 313 (316)
+..|+.+++++|+++|++++..++.
T Consensus 146 ~~~~g~~~~~~~Ll~~~a~~~~~~~~ 171 (239)
T 1ycs_B 146 EMEEGYTQCSQFLYGVQEKMGIMNKG 171 (239)
T ss_dssp SSSTTCCCHHHHHHHHHHHTTTTGGG
T ss_pred HhhhccHHHHHHHHHhhhcccccccc
Confidence 7889999999999999999887554
No 80
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.94 E-value=3.2e-26 Score=168.44 Aligned_cols=131 Identities=20% Similarity=0.207 Sum_probs=122.9
Q ss_pred CCCCccCCCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhc
Q 040452 159 STSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKR 238 (316)
Q Consensus 159 g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~ 238 (316)
+++++..+..|.||||+|+..++.+ ++++|++.+. ..+..+..|.||||+|+. |+.+++++|+++
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~------------~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~ 66 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVE------------TVRQLLEAGA--DPNALNRFGRRPIQVMMM-GSAQVAELLLLH 66 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHH------------HHHHHHHTTC--CTTCCCTTCCTTTTTSTT-SCHHHHHHHHHH
T ss_pred CCCccCCCCCCccHHHHHHHcCCHH------------HHHHHHHcCC--CcCCcCCCCCCHHHHHHc-CCHHHHHHHHHC
Confidence 4678889999999999999999999 9999999988 678889999999999999 999999999999
Q ss_pred CCCCccccccCC-CchHHHHHHhcCCHHHHHHHHhcCCC---CCCCCCChHHHHHHcCCHHHHHHHHhcccc
Q 040452 239 GSNCFKYCCQRS-KMTALRLAAGQRHARTVKTILSLNPE---FNGEGDTPLPVAAKFGHFNIANVLIKREKL 306 (316)
Q Consensus 239 ~~~~~~~~~~~~-~~t~l~~A~~~~~~~~v~~L~~~~~~---~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~ 306 (316)
+++ . +..+.. |.||||+|+..|+.+++++|++.|++ .+..|.|||++|+..++.+++++|+++|++
T Consensus 67 g~~-~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 67 GAE-P-NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp TCC-S-SCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred CCC-C-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 998 5 678888 99999999999999999999999998 567899999999999999999999999986
No 81
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.93 E-value=5.5e-26 Score=167.17 Aligned_cols=129 Identities=19% Similarity=0.119 Sum_probs=90.2
Q ss_pred CCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCccccccc
Q 040452 131 SANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKP 210 (316)
Q Consensus 131 ~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~ 210 (316)
..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+. ++.+ ++++|++.+. ..+
T Consensus 7 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~------------~v~~Ll~~g~--~~~ 71 (136)
T 1d9s_A 7 MLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQ------------VAELLLLHGA--EPN 71 (136)
T ss_dssp CCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHH------------HHHHHHHHTC--CSS
T ss_pred CCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHH------------HHHHHHHCCC--CCC
Confidence 455566777777777777777777777777777777777777777766 6666 7777777666 556
Q ss_pred ccccc-CCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCCC
Q 040452 211 LFVVI-GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPE 276 (316)
Q Consensus 211 ~~~~~-~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~ 276 (316)
..+.. |.||||+|+..|+.+++++|+++|++ . +..+..|.||||+|+..++.+++++|+++|++
T Consensus 72 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 72 CADPATLTRPVHDAAREGFLDTLVVLHRAGAR-L-DVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp CCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCC-C-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-C-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 66666 67777777777777777777777766 3 56666777777777777777777777776653
No 82
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.93 E-value=8.4e-28 Score=192.56 Aligned_cols=179 Identities=18% Similarity=0.114 Sum_probs=144.7
Q ss_pred HHHHHhCCCCCC--CCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhhccccccccCcccHHH
Q 040452 118 VKILTGQDPDYP--YSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVI 195 (316)
Q Consensus 118 ~~~Ll~~~~~~~--~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~ 195 (316)
++.|+.++.+.. ...+..+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~------------ 68 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYS------------ 68 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHH------------
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHH------------
Confidence 356677766543 234456778899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccc-cCCCchHHHHH--HhcCCHHHHHHHHh
Q 040452 196 IAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCC-QRSKMTALRLA--AGQRHARTVKTILS 272 (316)
Q Consensus 196 ~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~-~~~~~t~l~~A--~~~~~~~~v~~L~~ 272 (316)
++++|++.+. ..+..|..|.||||+|+..|+.+++++|++.|++ . +.. +..|.||||+| +..|+.+++++|++
T Consensus 69 ~v~~Ll~~ga--~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-~-~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~ 144 (229)
T 2vge_A 69 IVDFLITAGA--NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAA-I-FATTLSDGATAFEKCDPYREGYADCATYLAD 144 (229)
T ss_dssp HHHHHHHTTC--CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-T-TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHCCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-c-ccccCCCCCCHHHHHHHHhcChHHHHHHHHH
Confidence 9999999998 7788899999999999999999999999999998 5 444 46899999999 99999999999999
Q ss_pred cCCC---CCCCCCChHHHHHHcCCHHHHHHHHhcccc--ccCcccccc
Q 040452 273 LNPE---FNGEGDTPLPVAAKFGHFNIANVLIKREKL--AQHEDEELE 315 (316)
Q Consensus 273 ~~~~---~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~--~~~~~~~~~ 315 (316)
.|++ .+..|.||++.++... ..++|+++|++ ++.+|.+|+
T Consensus 145 ~ga~~~~~~~~~~~~l~~~~~~~---~~~~ll~~ga~~~~~~~d~~G~ 189 (229)
T 2vge_A 145 VEQSMGLMNSGAVYALWDYSAEF---GDELSFREGESVTVLRRDGPEE 189 (229)
T ss_dssp HHHHTTTSGGGEEEESSCBCCSS---TTBCCBCTTCEEEEEESSCTTC
T ss_pred cCCCcccccCCchHHHHHHhhcc---ccccCccccccccccccCCCcc
Confidence 9888 4456778887654443 34688999998 555666554
No 83
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.93 E-value=6.9e-26 Score=175.20 Aligned_cols=161 Identities=10% Similarity=0.036 Sum_probs=125.4
Q ss_pred CCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCH----HHHHHHHhCCCCCccCCCCCCCHHHHHH
Q 040452 102 NNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYS----EMVIELLENSTSVSYEGPNGKTALHAAA 177 (316)
Q Consensus 102 ~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~----~~v~~Ll~~g~~~~~~~~~~~t~L~~a~ 177 (316)
+.++|+.|+..|+.+.++.++..+... ..+..|.||||+|+..++. +++++|+++|++++.++..|.||||+|+
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~ 83 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF 83 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence 467899999999999999999877542 3336799999999999975 5999999999999999999999999999
Q ss_pred HhhccccccccCcccHHHHHHHHhcCccccccccccccCC-cHHHHHHhcC-----CHHHHHHHHh-cCCCCccccccCC
Q 040452 178 MHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGW-TPIHYAAYYD-----QYQLIHMLLK-RGSNCFKYCCQRS 250 (316)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~-t~l~~A~~~~-----~~~~~~~Ll~-~~~~~~~~~~~~~ 250 (316)
..++.+. .....++++|+++|. +++..|..|. ||||+|+..+ ..+++++|++ +|++ . +..+..
T Consensus 84 ~~~~~~~------~~~~~iv~~Ll~~Ga--din~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad-~-~~~d~~ 153 (186)
T 3t8k_A 84 QGGGNDI------TGTTELCKIFLEKGA--DITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ-L-LIKDKW 153 (186)
T ss_dssp HHCTTCH------HHHHHHHHHHHHTTC--CSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC-T-TCCCTT
T ss_pred HcCCcch------hhHHHHHHHHHHCCC--CCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC-C-cccCCC
Confidence 8876430 001126788888877 6777777787 8888887743 3457777777 7777 4 677777
Q ss_pred CchHHHHHHhcCCHHHHHHHHhcC
Q 040452 251 KMTALRLAAGQRHARTVKTILSLN 274 (316)
Q Consensus 251 ~~t~l~~A~~~~~~~~v~~L~~~~ 274 (316)
|.||||+|++.|+.+++++|.+..
T Consensus 154 G~TpL~~A~~~~~~~~v~~L~~~~ 177 (186)
T 3t8k_A 154 GLTALEFVKRCQKPIALKMMEDYI 177 (186)
T ss_dssp SCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777777777777777553
No 84
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.92 E-value=2.2e-25 Score=167.96 Aligned_cols=140 Identities=16% Similarity=0.163 Sum_probs=86.5
Q ss_pred CCCCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCC-HHHHHH
Q 040452 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKT-ALHAAA 177 (316)
Q Consensus 99 d~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t-~L~~a~ 177 (316)
+..|.||||+|+..|+.+++++|++.+.+++ ..+..|.||||+|+ .|+.+++++|+++|++++.++..|.| |||+|+
T Consensus 9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~ 86 (156)
T 1bi7_B 9 MEPSADWLATAAARGRVEEVRALLEAGANPN-APNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAA 86 (156)
T ss_dssp -CCSTTHHHHHHHHTCHHHHHHHHTTTCCTT-CCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHH
T ss_pred CccchHHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence 4566777777777777777777777766654 55666777777764 67777777777777777777777776 777777
Q ss_pred HhhccccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHH
Q 040452 178 MHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALR 256 (316)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~ 256 (316)
..++.+ ++++|++.+. ..+..|..|.||||+|+..|+.+++++|+++|++ . +..+..|.||.+
T Consensus 87 ~~~~~~------------~v~~Ll~~ga--~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~-~-~~~~~~g~t~~~ 149 (156)
T 1bi7_B 87 REGFLD------------TLVVLHRAGA--RLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGG-T-RGSNHARIDAAE 149 (156)
T ss_dssp HHTCHH------------HHHHHHHHTC--CSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred HCCCHH------------HHHHHHHcCC--CCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCC-C-CccCcCcCcccc
Confidence 777666 7777776666 5556666666777777776777777777666666 3 455556666554
No 85
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.92 E-value=1.9e-25 Score=168.24 Aligned_cols=140 Identities=17% Similarity=0.047 Sum_probs=107.0
Q ss_pred CCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCccccccc
Q 040452 131 SANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKP 210 (316)
Q Consensus 131 ~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~ 210 (316)
..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+ .++.+ ++++|++.+. ..+
T Consensus 7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~------------~v~~Ll~~g~--~~~ 71 (156)
T 1bi7_B 7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSAR------------VAELLLLHGA--EPN 71 (156)
T ss_dssp ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHH------------HHHHHHTTTC--CCC
T ss_pred CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHH------------HHHHHHHcCC--CCC
Confidence 34566889999999999999999999999999888889999999884 77777 8899998887 677
Q ss_pred cccccCCc-HHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCCC---CCCCCCChHH
Q 040452 211 LFVVIGWT-PIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPE---FNGEGDTPLP 286 (316)
Q Consensus 211 ~~~~~~~t-~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~---~~~~g~t~l~ 286 (316)
..+..|.| |||+|+..|+.+++++|+++|++ . +..+..|.||||+|+..|+.+++++|+++|++ .+..|.||.+
T Consensus 72 ~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~-~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~ 149 (156)
T 1bi7_B 72 CADPATLTRPVHDAAREGFLDTLVVLHRAGAR-L-DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE 149 (156)
T ss_dssp CCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC-S-SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------
T ss_pred CcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCC-C-cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence 78888888 88888888888888888888887 4 67788888888888888888888888888887 4456677655
Q ss_pred H
Q 040452 287 V 287 (316)
Q Consensus 287 ~ 287 (316)
-
T Consensus 150 ~ 150 (156)
T 1bi7_B 150 G 150 (156)
T ss_dssp -
T ss_pred c
Confidence 3
No 86
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.92 E-value=2.1e-24 Score=156.35 Aligned_cols=124 Identities=31% Similarity=0.365 Sum_probs=70.4
Q ss_pred CCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCcccccccccccc
Q 040452 136 GKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVI 215 (316)
Q Consensus 136 ~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~ 215 (316)
|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+ ++++|++.+. ..+..+..
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~------------~~~~Ll~~g~--~~~~~~~~ 67 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE------------VVKLLLEAGA--DVNAKDKN 67 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHH------------HHHHHHHTTC--CTTCCCTT
T ss_pred CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHH------------HHHHHHHcCC--CCcccCCC
Confidence 555666666666666666666656555555555555555555555555 5555555554 34444555
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCC
Q 040452 216 GWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275 (316)
Q Consensus 216 ~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~ 275 (316)
|.||||.|+..|+.+++++|+++|++ . +..+..|.|||++|+..|+.+++++|+++|+
T Consensus 68 g~t~l~~A~~~~~~~~~~~Ll~~g~~-~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 68 GRTPLHLAARNGHLEVVKLLLEAGAD-V-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125 (126)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCC-T-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred CCcHHHHHHHcChHHHHHHHHHcCCC-C-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 55555555555555555555555555 2 3445555555555555555555555555554
No 87
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.92 E-value=1.1e-24 Score=160.11 Aligned_cols=125 Identities=26% Similarity=0.315 Sum_probs=79.2
Q ss_pred CCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCcccccccccc
Q 040452 134 NYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFV 213 (316)
Q Consensus 134 ~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~ 213 (316)
..+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+ ++++|++.+. ..+..|
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~------------~v~~Ll~~g~--~~~~~d 77 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLE------------IVEVLLKNGA--DVNAVD 77 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH------------HHHHHHHTTC--CTTCCC
T ss_pred ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH------------HHHHHHHcCC--CCCcCC
Confidence 34566666666666666666666666666666666666666666666666 6666666655 455556
Q ss_pred ccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcC
Q 040452 214 VIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLN 274 (316)
Q Consensus 214 ~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~ 274 (316)
..|.||||+|+..|+.+++++|+++|++ . +..+..|.|||++|+..|+.+++++|++.|
T Consensus 78 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 78 AIGFTPLHLAAFIGHLEIAEVLLKHGAD-V-NAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHTTCC-T-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCC-C-cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 6666666666666666666666666665 3 455566666666666666666666666543
No 88
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.92 E-value=3.5e-24 Score=155.14 Aligned_cols=126 Identities=32% Similarity=0.387 Sum_probs=119.3
Q ss_pred CCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhh
Q 040452 101 ENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHF 180 (316)
Q Consensus 101 ~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~ 180 (316)
+|.||||+|+..|+.+++++|++.+.++. ..+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 79 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Confidence 48999999999999999999999998865 67888999999999999999999999999999999999999999999999
Q ss_pred ccccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 040452 181 YYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSN 241 (316)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~ 241 (316)
+.+ ++++|++.+. ..+..+..|.|||++|+..|+.+++++|+++|++
T Consensus 80 ~~~------------~~~~Ll~~g~--~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 80 HLE------------VVKLLLEAGA--DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp CHH------------HHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred hHH------------HHHHHHHcCC--CCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 999 9999999998 6778899999999999999999999999999874
No 89
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.92 E-value=2.3e-24 Score=158.45 Aligned_cols=126 Identities=29% Similarity=0.255 Sum_probs=117.9
Q ss_pred CCCCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHH
Q 040452 99 DDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAM 178 (316)
Q Consensus 99 d~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~ 178 (316)
...+.||||+|+..|+.+++++|++.+.+++ ..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~ 89 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANGADVN-AKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAF 89 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence 4567899999999999999999999999875 678889999999999999999999999999999999999999999999
Q ss_pred hhccccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcC
Q 040452 179 HFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRG 239 (316)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~ 239 (316)
.++.+ ++++|++.+. ..+..|..|.|||++|+..|+.+++++|+++|
T Consensus 90 ~~~~~------------~v~~Ll~~g~--~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 90 IGHLE------------IAEVLLKHGA--DVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HTCHH------------HHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred cCCHH------------HHHHHHHcCC--CCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 99999 9999999998 67888999999999999999999999999875
No 90
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.91 E-value=2.7e-25 Score=171.91 Aligned_cols=162 Identities=14% Similarity=-0.030 Sum_probs=138.8
Q ss_pred CCchhHHHHhcCCHHHHHHHHhCCCCCccCC-CCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCccccccccccc
Q 040452 136 GKTQLYLAAKGRYSEMVIELLENSTSVSYEG-PNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVV 214 (316)
Q Consensus 136 ~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~-~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~ 214 (316)
+.++|+.|++.|+.+.++.++..+.+ ..+ ..|.||||+|+..++.+. ...++++|++.|. +++..|.
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~--~~~~~~g~T~Lh~A~~~~~~~~--------~~~iv~~Ll~~Ga--dvn~~d~ 73 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYE--DKESVLKSNILYDVLRNNNDEA--------RYKISMFLINKGA--DIKSRTK 73 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSS--CHHHHHTTTHHHHHTTCSCHHH--------HHHHHHHHHHTTC--CSSCCCT
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCcc--cccccCCCCHHHHHHHcCCcch--------HHHHHHHHHHCCC--CCCCCCC
Confidence 46789999999999999999987743 444 679999999999875420 0118999999999 7888999
Q ss_pred cCCcHHHHHHhcCC------HHHHHHHHhcCCCCccccccCCCc-hHHHHHHhcC-----CHHHHHHHHh-cCCC---CC
Q 040452 215 IGWTPIHYAAYYDQ------YQLIHMLLKRGSNCFKYCCQRSKM-TALRLAAGQR-----HARTVKTILS-LNPE---FN 278 (316)
Q Consensus 215 ~~~t~l~~A~~~~~------~~~~~~Ll~~~~~~~~~~~~~~~~-t~l~~A~~~~-----~~~~v~~L~~-~~~~---~~ 278 (316)
.|+||||+|+..++ .+++++|+++|++ + +..+..|. ||||+|+..+ +.+++++|++ .|++ .|
T Consensus 74 ~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gad-i-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d 151 (186)
T 3t8k_A 74 EGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD-I-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKD 151 (186)
T ss_dssp TCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCC-S-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCC
T ss_pred CCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCC-C-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccC
Confidence 99999999999886 6889999999999 5 78899999 9999999944 4679999999 9998 67
Q ss_pred CCCCChHHHHHHcCCHHHHHHHHhccccccCcc
Q 040452 279 GEGDTPLPVAAKFGHFNIANVLIKREKLAQHED 311 (316)
Q Consensus 279 ~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~ 311 (316)
..|.|||++|++.|+.+++++|.+.....+..+
T Consensus 152 ~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 152 KWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184 (186)
T ss_dssp TTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHHHHHHhccc
Confidence 889999999999999999999998877666554
No 91
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.90 E-value=7.5e-24 Score=171.41 Aligned_cols=139 Identities=19% Similarity=0.122 Sum_probs=96.1
Q ss_pred CCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCC-CCCCCHHHHHHHh
Q 040452 101 ENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEG-PNGKTALHAAAMH 179 (316)
Q Consensus 101 ~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~-~~~~t~L~~a~~~ 179 (316)
.|.||||+|+..|+.+++++|++ +.+++ ..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..
T Consensus 44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~ 121 (244)
T 3ui2_A 44 EYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 121 (244)
T ss_dssp HHHHHHHHHHTTTCHHHHHHTTT-TCCTT-CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHc-CCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence 57788888888888888888887 66644 566778888888888888888888888888777776 6677777777777
Q ss_pred hccccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHH
Q 040452 180 FYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAA 259 (316)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~ 259 (316)
|+.+ ++++|++++. ..+..|..|.||||+|+..+ ....+.|||++|+
T Consensus 122 g~~~------------~v~~Ll~~ga--~~~~~d~~g~t~l~~A~~~~-------------------~~~~~~~~l~~a~ 168 (244)
T 3ui2_A 122 VRPE------------VVEALVELGA--DIEVEDERGLTALELAREIL-------------------KTTPKGNPMQFGR 168 (244)
T ss_dssp TCHH------------HHHHHHHTTC--CTTCCCTTCCCHHHHHHHHH-------------------TTCCCSSHHHHHH
T ss_pred CCHH------------HHHHHHHCCC--CCCCCCCCCCcHHHHHHHHH-------------------hccCCCCHHHHHH
Confidence 7777 7777777766 55566666777777665411 0123446666666
Q ss_pred hcCCHHHHHHHHhcC
Q 040452 260 GQRHARTVKTILSLN 274 (316)
Q Consensus 260 ~~~~~~~v~~L~~~~ 274 (316)
..|+.+++++|.+.+
T Consensus 169 ~~g~~~iv~~L~~~~ 183 (244)
T 3ui2_A 169 RIGLEKVINVLEGQV 183 (244)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HcChHHHHHHHHHhc
Confidence 666666666666543
No 92
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.90 E-value=1.1e-23 Score=162.84 Aligned_cols=109 Identities=23% Similarity=0.164 Sum_probs=63.5
Q ss_pred CCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCC-CCCCCHHHHHHHh
Q 040452 101 ENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEG-PNGKTALHAAAMH 179 (316)
Q Consensus 101 ~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~-~~~~t~L~~a~~~ 179 (316)
.|.||||+|+..|+.+++++|++ +.+++ ..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..
T Consensus 43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~ 120 (183)
T 3deo_A 43 EYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 120 (183)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTT-TSCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHh-cCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhc
Confidence 45666666666666666666666 55433 455556666666666666666666666666665555 5555555555555
Q ss_pred hccccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHh
Q 040452 180 FYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAY 225 (316)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~ 225 (316)
++.+ ++++|++++. ..+..|..|.|||++|+.
T Consensus 121 ~~~~------------~v~~Ll~~ga--~~~~~d~~g~tpl~~A~~ 152 (183)
T 3deo_A 121 VRPE------------VVEALVELGA--DIEVEDERGLTALELARE 152 (183)
T ss_dssp TCHH------------HHHHHHHHTC--CTTCCCTTSCCHHHHHHH
T ss_pred CcHH------------HHHHHHHcCC--CCcCCCCCCCCHHHHHHH
Confidence 5555 5555555554 344455555555555543
No 93
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.90 E-value=5.4e-24 Score=156.68 Aligned_cols=132 Identities=22% Similarity=0.219 Sum_probs=114.6
Q ss_pred CCCCccCCCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhc
Q 040452 159 STSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKR 238 (316)
Q Consensus 159 g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~ 238 (316)
|+++ .++..|.||||+|+..++.+ ++++|++.+. ..+..|..|.||||+|+..|+.+++++|+++
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~------------~~~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 65 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIP------------SVEYLLQNGS--DPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHH------------HHHHHHHTTC--CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHH------------HHHHHHHcCC--CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 5667 78899999999999999999 9999999988 6788899999999999999999999999999
Q ss_pred CCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCCC---CCCCCCChHHHHHHcCCHHHHHHHHhccccc
Q 040452 239 GSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPE---FNGEGDTPLPVAAKFGHFNIANVLIKREKLA 307 (316)
Q Consensus 239 ~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~---~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~ 307 (316)
+++ . +..+..|.||||+|+..|+.+++++|++.|++ .+..|.|||++|+..+..+++++|.+++...
T Consensus 66 g~~-~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s~ 135 (137)
T 3c5r_A 66 KAL-V-NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSS 135 (137)
T ss_dssp TCC-T-TCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-------
T ss_pred CCc-c-cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccccCC
Confidence 998 4 67888999999999999999999999999998 6788999999999999999999888776543
No 94
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.89 E-value=8.2e-24 Score=155.70 Aligned_cols=128 Identities=20% Similarity=0.159 Sum_probs=89.2
Q ss_pred CCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCccccccc
Q 040452 131 SANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKP 210 (316)
Q Consensus 131 ~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~ 210 (316)
..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+ ++++|++.+. ..+
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~------------~~~~Ll~~g~--~~~ 70 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLK------------VVELLLQHKA--LVN 70 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH------------HHHHHHHTTC--CTT
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHH------------HHHHHHHcCC--ccc
Confidence 35566777777777777777777777777777777777777777777777777 7777777766 556
Q ss_pred cccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcC
Q 040452 211 LFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLN 274 (316)
Q Consensus 211 ~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~ 274 (316)
..|..|.||||+|+..|+.+++++|+++|++ . +..+..|.||+++|+..+..+++++|.+.+
T Consensus 71 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~-~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 71 TTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS-R-NAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132 (137)
T ss_dssp CCCGGGCCHHHHHHHTTCHHHHHHHHHTTCC-T-TCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-C-CCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence 6667777777777777777777777777776 3 566777777777777777777776665543
No 95
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.89 E-value=4.2e-23 Score=159.61 Aligned_cols=141 Identities=23% Similarity=0.170 Sum_probs=128.3
Q ss_pred CCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCccccccccc
Q 040452 133 NNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLF 212 (316)
Q Consensus 133 ~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~ 212 (316)
+..|.||||+|+..|+.+++++|++ |++++..+..|.||||+|+..++.+ ++++|++.+. ..+..
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~------------~v~~Ll~~ga--~~~~~ 105 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDK------------CVRLLAEAGA--DLDHR 105 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHH------------HHHHHHHTTC--CTTCC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHH------------HHHHHHHcCC--CCCcC
Confidence 3458999999999999999999999 9999999999999999999999999 9999999998 66667
Q ss_pred c-ccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCCCCCCCCCChHHHHHHc
Q 040452 213 V-VIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPEFNGEGDTPLPVAAKF 291 (316)
Q Consensus 213 ~-~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~g~t~l~~A~~~ 291 (316)
+ ..|+||||+|+..|+.+++++|+++|++ . +..+..|.||||+|++.++. ..+.++|++|+..
T Consensus 106 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~-~~~d~~g~tpl~~A~~~~~~--------------~~~~~~l~~a~~~ 169 (183)
T 3deo_A 106 DMRGGLTALHMAAGYVRPEVVEALVELGAD-I-EVEDERGLTALELAREILKT--------------TPKGNPMQFGRRI 169 (183)
T ss_dssp CSSSSCCHHHHHHHTTCHHHHHHHHHHTCC-T-TCCCTTSCCHHHHHHHHHHT--------------CCCCSHHHHHHHH
T ss_pred CCCCCCCHHHHHHhcCcHHHHHHHHHcCCC-C-cCCCCCCCCHHHHHHHhccC--------------cccccHHHHHHHc
Confidence 6 8899999999999999999999999998 4 78899999999999986554 2457999999999
Q ss_pred CCHHHHHHHHhcc
Q 040452 292 GHFNIANVLIKRE 304 (316)
Q Consensus 292 ~~~~~~~~Ll~~g 304 (316)
|+.+++++|.++-
T Consensus 170 ~~~~i~~~L~~~~ 182 (183)
T 3deo_A 170 GLEKVINVLEGQV 182 (183)
T ss_dssp HHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHhh
Confidence 9999999998763
No 96
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.89 E-value=5.2e-23 Score=166.43 Aligned_cols=142 Identities=23% Similarity=0.160 Sum_probs=128.0
Q ss_pred CCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCcccccccccc
Q 040452 134 NYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFV 213 (316)
Q Consensus 134 ~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~ 213 (316)
..|.||||+|+..|+.+++++|++ |++++.++..|.||||+|+..|+.+ ++++|++.+. ..+..+
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~------------~v~~Ll~~ga--~~~~~~ 107 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDK------------CVRLLAEAGA--DLDHRD 107 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHH------------HHHHHHHTTC--CTTCCC
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHH------------HHHHHHHcCC--CCCcCC
Confidence 458999999999999999999999 9999999999999999999999999 9999999998 666666
Q ss_pred -ccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCCCCCCCCCChHHHHHHcC
Q 040452 214 -VIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPEFNGEGDTPLPVAAKFG 292 (316)
Q Consensus 214 -~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~g~t~l~~A~~~~ 292 (316)
..|.||||+|+..|+.+++++|+++|++ . +..+..|.||||+|+..++. ..+.|||++|+..|
T Consensus 108 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~-~~~d~~g~t~l~~A~~~~~~--------------~~~~~~l~~a~~~g 171 (244)
T 3ui2_A 108 MRGGLTALHMAAGYVRPEVVEALVELGAD-I-EVEDERGLTALELAREILKT--------------TPKGNPMQFGRRIG 171 (244)
T ss_dssp SSSCCCHHHHHHHTTCHHHHHHHHHTTCC-T-TCCCTTCCCHHHHHHHHHTT--------------CCCSSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHCCCC-C-CCCCCCCCcHHHHHHHHHhc--------------cCCCCHHHHHHHcC
Confidence 8899999999999999999999999998 4 78899999999999874433 35789999999999
Q ss_pred CHHHHHHHHhcccc
Q 040452 293 HFNIANVLIKREKL 306 (316)
Q Consensus 293 ~~~~~~~Ll~~g~~ 306 (316)
+.+++++|++++.+
T Consensus 172 ~~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 172 LEKVINVLEGQVFE 185 (244)
T ss_dssp HHHHHHHHHHHHEE
T ss_pred hHHHHHHHHHhccc
Confidence 99999999987654
No 97
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.88 E-value=5.6e-23 Score=171.07 Aligned_cols=140 Identities=21% Similarity=0.165 Sum_probs=123.0
Q ss_pred CCchhHHHHhcCCHHHHHHHHhCCCCCcc------CCCCCCCHHHHHHHh---hccccccccCcccHHHHHHHHhcCccc
Q 040452 136 GKTQLYLAAKGRYSEMVIELLENSTSVSY------EGPNGKTALHAAAMH---FYYGKCLVCSSENWVIIAASLLNNKVI 206 (316)
Q Consensus 136 ~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~------~~~~~~t~L~~a~~~---~~~~~~~~~~~~~~~~~~~~Ll~~~~~ 206 (316)
..++|+.|+..|+.+.++.|++.|++++. .+..|.||||+|+.. ++.+ ++++|++.+.
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~------------iv~~Ll~~ga- 217 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLP------------LVDFIIQNGG- 217 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHH------------HHHHHHHHSS-
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHH------------HHHHHHhcCC-
Confidence 45789999999999999999999999988 688999999999987 7777 9999999998
Q ss_pred cccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCCCCCCCCCChHH
Q 040452 207 ILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPEFNGEGDTPLP 286 (316)
Q Consensus 207 ~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~g~t~l~ 286 (316)
.++..|..|.||||+|+..|+.+++++|+++|++ . +..+..|.|||++|+..|+.+++++|++.|++ .|.||||
T Consensus 218 -dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~---~g~tpLh 291 (301)
T 2b0o_E 218 -HLDAKAADGNTALHYAALYNQPDCLKLLLKGRAL-V-GTVNEAGETALDIARKKHHKECEELLEQAQAG---TFAFPLH 291 (301)
T ss_dssp -CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-C-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH---TTSSCCC
T ss_pred -CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-C-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC---CCCChhH
Confidence 6788899999999999999999999999999998 5 78899999999999999999999999999885 6889999
Q ss_pred HHHHcCCH
Q 040452 287 VAAKFGHF 294 (316)
Q Consensus 287 ~A~~~~~~ 294 (316)
+|+..|+.
T Consensus 292 ~A~~~g~~ 299 (301)
T 2b0o_E 292 VDYSWVIS 299 (301)
T ss_dssp --------
T ss_pred HHHhcCCc
Confidence 99998864
No 98
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.88 E-value=6.9e-23 Score=170.53 Aligned_cols=141 Identities=19% Similarity=0.142 Sum_probs=123.2
Q ss_pred CCcHHhHHHHcCCHHHHHHHHhCCCCCCCC-----CCCCCCchhHHHHhc---CCHHHHHHHHhCCCCCccCCCCCCCHH
Q 040452 102 NNTALHEAVCHGNVQVVKILTGQDPDYPYS-----ANNYGKTQLYLAAKG---RYSEMVIELLENSTSVSYEGPNGKTAL 173 (316)
Q Consensus 102 ~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~-----~~~~~~~~l~~a~~~---~~~~~v~~Ll~~g~~~~~~~~~~~t~L 173 (316)
..++|+.|+..++.+.++.|+..+++++.. .+..|.||||+|+.. ++.+++++|+++|++++.+|..|.|||
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL 230 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 230 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 456799999999999999999999987643 578899999999997 899999999999999999999999999
Q ss_pred HHHHHhhccccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCch
Q 040452 174 HAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMT 253 (316)
Q Consensus 174 ~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t 253 (316)
|+|+..|+.+ ++++|++.++ .++..|..|.|||++|+..|+.+++++|++.+++ .|.|
T Consensus 231 h~A~~~g~~~------------~v~~Ll~~ga--d~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~--------~g~t 288 (301)
T 2b0o_E 231 HYAALYNQPD------------CLKLLLKGRA--LVGTVNEAGETALDIARKKHHKECEELLEQAQAG--------TFAF 288 (301)
T ss_dssp HHHHHTTCHH------------HHHHHHHTTC--CCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH--------TTSS
T ss_pred HHHHHcCCHH------------HHHHHHHcCC--CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC--------CCCC
Confidence 9999999999 9999999998 7788999999999999999999999999998765 4679
Q ss_pred HHHHHHhcCCH
Q 040452 254 ALRLAAGQRHA 264 (316)
Q Consensus 254 ~l~~A~~~~~~ 264 (316)
|||+|+..|+-
T Consensus 289 pLh~A~~~g~~ 299 (301)
T 2b0o_E 289 PLHVDYSWVIS 299 (301)
T ss_dssp CCC--------
T ss_pred hhHHHHhcCCc
Confidence 99999998863
No 99
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.88 E-value=1.5e-22 Score=145.99 Aligned_cols=108 Identities=19% Similarity=0.090 Sum_probs=55.4
Q ss_pred CCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhh
Q 040452 101 ENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHF 180 (316)
Q Consensus 101 ~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~ 180 (316)
.|.||||+|+..|+.+++++|++.+.+++ ..+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..+
T Consensus 6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~ 84 (123)
T 3aaa_C 6 MCDKEFMWALKNGDLDEVKDYVAKGEDVN-RTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG 84 (123)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCTT-SCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCcC-ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence 34455555555555555555555555432 34444555555555555555555555555555555555555555555555
Q ss_pred ccccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHH
Q 040452 181 YYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYA 223 (316)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A 223 (316)
+.+ ++++|++.+. ..+..|..|.||+++|
T Consensus 85 ~~~------------~v~~Ll~~ga--~~~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 85 HVS------------CVKLLLSKGA--DKTVKGPDGLTAFEAT 113 (123)
T ss_dssp CHH------------HHHHHHHTTC--CTTCCCTTSCCHHHHC
T ss_pred CHH------------HHHHHHHcCC--CCCCcCCCCCCHHHHh
Confidence 554 5555555544 3444444455555544
No 100
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.88 E-value=1.5e-22 Score=145.96 Aligned_cols=118 Identities=19% Similarity=0.115 Sum_probs=100.7
Q ss_pred CCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCccccccccc
Q 040452 133 NNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLF 212 (316)
Q Consensus 133 ~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~ 212 (316)
+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+ ++++|++.+. ..+..
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~------------~v~~Ll~~g~--~~~~~ 69 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLE------------ILEFLLLKGA--DINAP 69 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHH------------HHHHHHTTTC--CTTCC
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHH------------HHHHHHHcCC--CCCcC
Confidence 456789999999999999999999999999999999999999999999998 9999999887 67788
Q ss_pred cccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHH
Q 040452 213 VVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHART 266 (316)
Q Consensus 213 ~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~ 266 (316)
|..|+||||+|+..|+.+++++|+++|++ . +..+..|.||+++|...+..++
T Consensus 70 d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~-~~~~~~g~t~l~~A~~~~~~~l 121 (123)
T 3aaa_C 70 DKHHITPLLSAVYEGHVSCVKLLLSKGAD-K-TVKGPDGLTAFEATDNQAIKAL 121 (123)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHTTCC-T-TCCCTTSCCHHHHCCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-C-CCcCCCCCCHHHHhCCHHHHHH
Confidence 88899999999999999999999999888 4 6788889999998854444443
No 101
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.87 E-value=8.8e-23 Score=162.84 Aligned_cols=135 Identities=18% Similarity=0.096 Sum_probs=110.0
Q ss_pred CCCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhc-CCCCc
Q 040452 165 EGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKR-GSNCF 243 (316)
Q Consensus 165 ~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~-~~~~~ 243 (316)
.+..|.||||+|+..|+.+ ++++|++.+. ..+..|..|.||||+|+..|+.+++++|++. +++ .
T Consensus 69 ~~~~g~t~L~~A~~~g~~~------------~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~ 133 (222)
T 3ehr_A 69 QAESIDNPLHEAAKRGNLS------------WLRECLDNRV--GVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE-L 133 (222)
T ss_dssp HEEEESCHHHHHHHHTCHH------------HHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-C
T ss_pred cccccccccccccccCcHH------------HHHHHHhCCC--CccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-c
Confidence 3567899999999999999 9999999988 6788899999999999999999999999998 777 4
Q ss_pred cccccCCCchHHHHHHhcCCHHHHHHHHhcCCC---CCCCCCChHHHHHHcCCHHHHHHHHhccccccCcccccc
Q 040452 244 KYCCQRSKMTALRLAAGQRHARTVKTILSLNPE---FNGEGDTPLPVAAKFGHFNIANVLIKREKLAQHEDEELE 315 (316)
Q Consensus 244 ~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~---~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~ 315 (316)
+..+..|.||||+|+..|+.+++++|++.|++ .+..|.|||++|+..+..++++.|+++|++....+.+++
T Consensus 134 -~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~~ 207 (222)
T 3ehr_A 134 -NQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDY 207 (222)
T ss_dssp -CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred -cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhhh
Confidence 78899999999999999999999999999998 678899999999999999999999999999998887764
No 102
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.86 E-value=2.5e-22 Score=160.18 Aligned_cols=127 Identities=23% Similarity=0.226 Sum_probs=59.3
Q ss_pred CCCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhC-CCCCccCCCCCCCHHHHHHH
Q 040452 100 DENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLEN-STSVSYEGPNGKTALHAAAM 178 (316)
Q Consensus 100 ~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~-g~~~~~~~~~~~t~L~~a~~ 178 (316)
..|.||||+|+..|+.+++++|++.+.+++ ..+..|.||||+|+..|+.+++++|++. |++++.++..|.||||+|+.
T Consensus 71 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~ 149 (222)
T 3ehr_A 71 ESIDNPLHEAAKRGNLSWLRECLDNRVGVN-GLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW 149 (222)
T ss_dssp EEESCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred cccccccccccccCcHHHHHHHHhCCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence 344555555555555555555555554433 3444455555555555555555555554 45555555555555555555
Q ss_pred hhccccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 040452 179 HFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSN 241 (316)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~ 241 (316)
.|+.+ ++++|++.+. ..+..+..|.|||++|+..++.++++.|++.++.
T Consensus 150 ~~~~~------------~v~~Ll~~ga--~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~ 198 (222)
T 3ehr_A 150 KGYAD------------IVQLLLAKGA--RTDLRNIEKKLAFDMATNAACASLLKKKQGTDAV 198 (222)
T ss_dssp HTCHH------------HHHHHHHHTC--CSCCCCTTSCCHHHHCCSHHHHHHHC--------
T ss_pred cCCHH------------HHHHHHHcCC--CCccccCCCCCHHHHhcchhHHHHHHHHhccchh
Confidence 44444 4555544444 3344444444444444444444444444444433
No 103
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.86 E-value=8.6e-21 Score=156.13 Aligned_cols=195 Identities=16% Similarity=0.048 Sum_probs=143.3
Q ss_pred CCCCCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCC-CCCccCCCCCCCHHHHH
Q 040452 98 ADDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENS-TSVSYEGPNGKTALHAA 176 (316)
Q Consensus 98 ~d~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g-~~~~~~~~~~~t~L~~a 176 (316)
.|..+.+.++.+...|+..+.+++...-+.........+... ......-..+++...- ...........++|+.|
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~----~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a 137 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDM----IARKDYITAKYMERRYARKKHADTAAKLHSLCEA 137 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCH----HHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCH----HHHHHHHHHHHHHhhcccccccccchhhhhhhhH
Confidence 466788899999999998887776544332111111111111 1111222223333221 11122222345789999
Q ss_pred HHhhccccccccCcccHHHHHHHHhcCccccc----cccccccCCcHHHHHHhc---CCHHHHHHHHhcCCCCccccccC
Q 040452 177 AMHFYYGKCLVCSSENWVIIAASLLNNKVIIL----KPLFVVIGWTPIHYAAYY---DQYQLIHMLLKRGSNCFKYCCQR 249 (316)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~----~~~~~~~~~t~l~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~~ 249 (316)
+..++.+ .+..++..+.+.. ....+..|.||||+|+.. |+.+++++|+++|++ . +..+.
T Consensus 138 ~~~~d~~------------~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-i-n~~d~ 203 (278)
T 1dcq_A 138 VKTRDIF------------GLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-L-DKQTG 203 (278)
T ss_dssp HHTTCHH------------HHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-T-TCCCT
T ss_pred hhhcccH------------HHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-c-cccCC
Confidence 9999988 8888888887221 444578899999999999 899999999999998 5 78899
Q ss_pred CCchHHHHHHhcCCHHHHHHHHhcCCC---CCCCCCChHHHHHHcCCHHHHHHHHhccccccCc
Q 040452 250 SKMTALRLAAGQRHARTVKTILSLNPE---FNGEGDTPLPVAAKFGHFNIANVLIKREKLAQHE 310 (316)
Q Consensus 250 ~~~t~l~~A~~~~~~~~v~~L~~~~~~---~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~ 310 (316)
.|.||||+|+..|+.+++++|++.|++ .+..|.|||++|+..|+.+++++|+++|++....
T Consensus 204 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~ 267 (278)
T 1dcq_A 204 KGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNS 267 (278)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCCCS
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence 999999999999999999999999998 6688999999999999999999999999975443
No 104
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.85 E-value=4.6e-21 Score=163.09 Aligned_cols=157 Identities=18% Similarity=0.133 Sum_probs=116.8
Q ss_pred CCCchhHHHHhc-CCHHHHHHHHhCCCCCccCC--CCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCcccccccc
Q 040452 135 YGKTQLYLAAKG-RYSEMVIELLENSTSVSYEG--PNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPL 211 (316)
Q Consensus 135 ~~~~~l~~a~~~-~~~~~v~~Ll~~g~~~~~~~--~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~ 211 (316)
.+.++||.|+.. ++.+++++|++.|++++..+ ..|.||||+|+..++.+ ++++|++++. ..+.
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~------------iv~~LL~~Ga--dvn~ 263 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLL------------ACEFLLQNGA--NVNQ 263 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHH------------HHHHHHHTTC--CTTC
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHH------------HHHHHHHcCC--CCCC
Confidence 345799999999 99999999999999999988 88999999999999999 9999999998 7788
Q ss_pred ccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCCC------CCCCCCChH
Q 040452 212 FVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPE------FNGEGDTPL 285 (316)
Q Consensus 212 ~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~------~~~~g~t~l 285 (316)
.|..|.||||+|+..|+.+++++|+++|++ . +..+..|.||||+|+..|+.+++++|+..+.. .+..+.|++
T Consensus 264 ~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad-~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l 341 (368)
T 3jue_A 264 ADSAGRGPLHHATILGHTGLACLFLKRGAD-L-GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYL 341 (368)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-T-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------
T ss_pred CCCCCCCHHHHHHHcCcHHHHHHHHHCcCC-C-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHH
Confidence 999999999999999999999999999998 4 78899999999999999999999999988654 335677888
Q ss_pred HHHHHcCC--HHHHHHHHhccccc
Q 040452 286 PVAAKFGH--FNIANVLIKREKLA 307 (316)
Q Consensus 286 ~~A~~~~~--~~~~~~Ll~~g~~~ 307 (316)
+++..... .+-.+.|..++.++
T Consensus 342 ~i~~~~~~~~~~~~ekl~r~~~~~ 365 (368)
T 3jue_A 342 DIFRDFSLMASDDPEKLSRRSHDL 365 (368)
T ss_dssp ------------------------
T ss_pred HHHHHHHhhcCCCHHHHHhcCCCc
Confidence 87766542 24445555555443
No 105
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.85 E-value=1.1e-20 Score=129.00 Aligned_cols=90 Identities=30% Similarity=0.508 Sum_probs=83.8
Q ss_pred cCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCCC---CCCCCCChHHHHHHc
Q 040452 215 IGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPE---FNGEGDTPLPVAAKF 291 (316)
Q Consensus 215 ~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~---~~~~g~t~l~~A~~~ 291 (316)
+|+||||+|+..|+.+++++|++.|++ . +..+..|.||||+|+..|+.+++++|++.|++ .+..|.|||++|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~ 78 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-V-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 78 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC-T-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCC-C-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence 488999999999999999999999998 5 78899999999999999999999999999998 567899999999999
Q ss_pred CCHHHHHHHHhcccc
Q 040452 292 GHFNIANVLIKREKL 306 (316)
Q Consensus 292 ~~~~~~~~Ll~~g~~ 306 (316)
|+.+++++|+++|++
T Consensus 79 ~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 79 GHLEVVKLLLEAGAY 93 (93)
T ss_dssp TCHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHcCCC
Confidence 999999999999985
No 106
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.84 E-value=2.2e-20 Score=153.72 Aligned_cols=122 Identities=20% Similarity=0.166 Sum_probs=64.2
Q ss_pred chhHHHHhcCCHHHHHHHHhCCCCCc------cCCCCCCCHHHHHHHh---hccccccccCcccHHHHHHHHhcCccccc
Q 040452 138 TQLYLAAKGRYSEMVIELLENSTSVS------YEGPNGKTALHAAAMH---FYYGKCLVCSSENWVIIAASLLNNKVIIL 208 (316)
Q Consensus 138 ~~l~~a~~~~~~~~v~~Ll~~g~~~~------~~~~~~~t~L~~a~~~---~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~ 208 (316)
++|+.|+..|+.+.+..+++.|++++ ..+..|.||||+|+.. ++.+ ++++|++++. .
T Consensus 132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~------------~v~~Ll~~ga--~ 197 (278)
T 1dcq_A 132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH------------IVDFLVQNSG--N 197 (278)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHH------------HHHHHHHHCS--C
T ss_pred hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHH------------HHHHHHHCCC--C
Confidence 34555555555555555555554422 2244455555555555 4444 5555555554 3
Q ss_pred cccccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCC
Q 040452 209 KPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNP 275 (316)
Q Consensus 209 ~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~ 275 (316)
.+..|..|.||||+|+..|+.+++++|+++|++ . +..+..|.||||+|+..|+.+++++|++.|+
T Consensus 198 in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad-~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga 262 (278)
T 1dcq_A 198 LDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS-I-EIANESGETPLDIAKRLKHEHCEELLTQALS 262 (278)
T ss_dssp TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-T-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-C-CCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 444555555555555555555555555555555 2 4455555555555555555555555555554
No 107
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.84 E-value=1.7e-20 Score=167.09 Aligned_cols=136 Identities=21% Similarity=0.190 Sum_probs=116.5
Q ss_pred CCchhHHHHhcCCHHHHHHHHhCCCCCccC------CCCCCCHHHHHHH---hhccccccccCcccHHHHHHHHhcCccc
Q 040452 136 GKTQLYLAAKGRYSEMVIELLENSTSVSYE------GPNGKTALHAAAM---HFYYGKCLVCSSENWVIIAASLLNNKVI 206 (316)
Q Consensus 136 ~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~------~~~~~t~L~~a~~---~~~~~~~~~~~~~~~~~~~~~Ll~~~~~ 206 (316)
..+.|+.|+..|+.++++.|++.|++++.. +..|.||||+|+. .|+.+ ++++|+++|.
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~------------~v~~Ll~~ga- 198 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLP------------LVDFIIQNGG- 198 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHH------------HHHHHHHHSC-
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHH------------HHHHHHHcCC-
Confidence 347799999999999999999999999877 8899999999976 88888 9999999998
Q ss_pred cccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCCCCCCCCCChHH
Q 040452 207 ILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPEFNGEGDTPLP 286 (316)
Q Consensus 207 ~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~g~t~l~ 286 (316)
+.+..|..|+||||+|+..|+.+++++|+++|++ . +..+..|.||||+|+..|+.+++++|++.|++.+. +|+|
T Consensus 199 -~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~-~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~---~~~h 272 (497)
T 3lvq_E 199 -HLDAKAADGNTALHYAALYNQPDCLKLLLKGRAL-V-GTVNEAGETALDIARKKHHKECEELLEQAQAGTFA---FPLH 272 (497)
T ss_dssp -CTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCC-C-SCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC-----------
T ss_pred -CCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-C-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC---Ccce
Confidence 7888999999999999999999999999999998 5 78899999999999999999999999999998543 6777
Q ss_pred HHHH
Q 040452 287 VAAK 290 (316)
Q Consensus 287 ~A~~ 290 (316)
.+..
T Consensus 273 ~~~~ 276 (497)
T 3lvq_E 273 VDYS 276 (497)
T ss_dssp ----
T ss_pred eecc
Confidence 6643
No 108
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.83 E-value=3.8e-20 Score=126.32 Aligned_cols=81 Identities=36% Similarity=0.427 Sum_probs=39.1
Q ss_pred CCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhhc
Q 040452 102 NNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFY 181 (316)
Q Consensus 102 ~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~ 181 (316)
|+||||+|+..++.+++++|++.+.+++ ..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~ 80 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 4445555555555555555554444432 344444555555555555555555555554444444444444444444444
Q ss_pred cc
Q 040452 182 YG 183 (316)
Q Consensus 182 ~~ 183 (316)
.+
T Consensus 81 ~~ 82 (93)
T 1n0q_A 81 LE 82 (93)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 109
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.82 E-value=5e-20 Score=156.73 Aligned_cols=146 Identities=18% Similarity=0.079 Sum_probs=116.7
Q ss_pred CCCcHHhHHHHc-CCHHHHHHHHhCCCCCCCCCC--CCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHH
Q 040452 101 ENNTALHEAVCH-GNVQVVKILTGQDPDYPYSAN--NYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAA 177 (316)
Q Consensus 101 ~~~t~l~~A~~~-~~~~~~~~Ll~~~~~~~~~~~--~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~ 177 (316)
.+.|+||.|+.. ++.+++++|+..|.+++ ..+ ..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn-~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~ 276 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAHGADVN-WVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHAT 276 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHTTCCTT-CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHcCCCCC-ccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 345799999999 99999999999999976 445 78999999999999999999999999999999999999999999
Q ss_pred HhhccccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcCCCC-ccccccCCCchHHH
Q 040452 178 MHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNC-FKYCCQRSKMTALR 256 (316)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~~~~~t~l~ 256 (316)
..++.+ ++++|++++. ..+..|..|.|||++|+..|+.+++++|+..+... .....+..+.|++.
T Consensus 277 ~~g~~~------------~v~~LL~~Ga--d~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~ 342 (368)
T 3jue_A 277 ILGHTG------------LACLFLKRGA--DLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLD 342 (368)
T ss_dssp HHTCHH------------HHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------
T ss_pred HcCcHH------------HHHHHHHCcC--CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHH
Confidence 999999 9999999998 77889999999999999999999999999866431 11233445667777
Q ss_pred HHHhc
Q 040452 257 LAAGQ 261 (316)
Q Consensus 257 ~A~~~ 261 (316)
++...
T Consensus 343 i~~~~ 347 (368)
T 3jue_A 343 IFRDF 347 (368)
T ss_dssp -----
T ss_pred HHHHH
Confidence 65544
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.82 E-value=7.2e-20 Score=163.02 Aligned_cols=126 Identities=21% Similarity=0.181 Sum_probs=116.8
Q ss_pred CCcHHhHHHHcCCHHHHHHHHhCCCCCCCC-----CCCCCCchhHHHHh---cCCHHHHHHHHhCCCCCccCCCCCCCHH
Q 040452 102 NNTALHEAVCHGNVQVVKILTGQDPDYPYS-----ANNYGKTQLYLAAK---GRYSEMVIELLENSTSVSYEGPNGKTAL 173 (316)
Q Consensus 102 ~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~-----~~~~~~~~l~~a~~---~~~~~~v~~Ll~~g~~~~~~~~~~~t~L 173 (316)
..+.|+.|+..|+.+.++.|+..|++++.. .+..|.||||+|+. .|+.+++++|+++|++++.+|..|.|||
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpL 211 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 211 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHH
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHH
Confidence 446799999999999999999999987532 27789999999966 8999999999999999999999999999
Q ss_pred HHHHHhhccccccccCcccHHHHHHHHhcCccccccccccccCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 040452 174 HAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTPIHYAAYYDQYQLIHMLLKRGSN 241 (316)
Q Consensus 174 ~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~ 241 (316)
|+|+..|+.+ ++++|+++|+ +.+..|..|.||||+|+..|+.+++++|+++|++
T Consensus 212 h~A~~~g~~~------------~v~~Ll~~ga--~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~ 265 (497)
T 3lvq_E 212 HYAALYNQPD------------CLKLLLKGRA--LVGTVNEAGETALDIARKKHHKECEELLEQAQAG 265 (497)
T ss_dssp HHHTTTTCHH------------HHHHHHHTCC--CCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC-
T ss_pred HHHHHcCCHH------------HHHHHHHcCC--CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence 9999999999 9999999999 7888999999999999999999999999999998
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.82 E-value=3.7e-20 Score=131.70 Aligned_cols=103 Identities=27% Similarity=0.307 Sum_probs=95.8
Q ss_pred cccccCCcHHHHHHhcCCHHHHHHHHhcCCCCccccccCCCchHHHHHHhcCCHHHHHHHHhcCCC---CCCCCCChHHH
Q 040452 211 LFVVIGWTPIHYAAYYDQYQLIHMLLKRGSNCFKYCCQRSKMTALRLAAGQRHARTVKTILSLNPE---FNGEGDTPLPV 287 (316)
Q Consensus 211 ~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~---~~~~g~t~l~~ 287 (316)
..|..|.||||.|+..|+.+++++|++.+++ . +..+..|.||||+|+..|+.+++++|++.|++ .+..|.|||++
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~ 81 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-V-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHL 81 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-S-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-C-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence 3577899999999999999999999999988 4 67889999999999999999999999999998 56789999999
Q ss_pred HHHcCCHHHHHHHHhccccccCcccccc
Q 040452 288 AAKFGHFNIANVLIKREKLAQHEDEELE 315 (316)
Q Consensus 288 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~ 315 (316)
|+..++.+++++|+++|++++..+.+++
T Consensus 82 A~~~~~~~~~~~Ll~~ga~~n~~~~~~~ 109 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDAKGADVNARSWGSS 109 (115)
T ss_dssp HHTTTCHHHHHHHHTTSSSHHHHSCCCC
T ss_pred HHHCCCHHHHHHHHHcCCCCCcCCcccc
Confidence 9999999999999999999999888765
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.80 E-value=1.8e-19 Score=128.10 Aligned_cols=107 Identities=26% Similarity=0.204 Sum_probs=98.3
Q ss_pred CCCCCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHH
Q 040452 98 ADDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAA 177 (316)
Q Consensus 98 ~d~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~ 177 (316)
.|..|.||||+|+..++.+++++|++.+.+++ ..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~ 83 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK 83 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSS-CCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 47889999999999999999999999999865 67889999999999999999999999999999999999999999999
Q ss_pred HhhccccccccCcccHHHHHHHHhcCccccccccccccCCcH
Q 040452 178 MHFYYGKCLVCSSENWVIIAASLLNNKVIILKPLFVVIGWTP 219 (316)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~ 219 (316)
..++.+ ++++|++++. .++..+..+.+|
T Consensus 84 ~~~~~~------------~~~~Ll~~ga--~~n~~~~~~~~~ 111 (115)
T 2l6b_A 84 KNGHHE------------IVKLLDAKGA--DVNARSWGSSHH 111 (115)
T ss_dssp TTTCHH------------HHHHHHTTSS--SHHHHSCCCC--
T ss_pred HCCCHH------------HHHHHHHcCC--CCCcCCcccccc
Confidence 999999 9999999998 677777777776
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.72 E-value=3.1e-17 Score=115.40 Aligned_cols=90 Identities=29% Similarity=0.285 Sum_probs=83.7
Q ss_pred CCCCCCcHHhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHH
Q 040452 98 ADDENNTALHEAVCHGNVQVVKILTGQDPDYPYSANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAA 177 (316)
Q Consensus 98 ~d~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~ 177 (316)
.+.+|.|+||+|+..|+.+++++|++.+.+++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+
T Consensus 20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~-~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~ 98 (110)
T 2zgd_A 20 MGSDLGKKLLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISI 98 (110)
T ss_dssp --CCHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred cCCccchHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHH
Confidence 46789999999999999999999999999875 67889999999999999999999999999999999999999999999
Q ss_pred HhhccccccccCcccHHHHHHHH
Q 040452 178 MHFYYGKCLVCSSENWVIIAASL 200 (316)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~L 200 (316)
..++.+ ++++|
T Consensus 99 ~~~~~~------------~~~~L 109 (110)
T 2zgd_A 99 DNGNED------------LAEIL 109 (110)
T ss_dssp HHTCHH------------HHHHH
T ss_pred HcCCHH------------HHHHh
Confidence 999999 88876
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.69 E-value=6e-17 Score=113.93 Aligned_cols=91 Identities=22% Similarity=0.153 Sum_probs=63.7
Q ss_pred CCCCCCCchhHHHHhcCCHHHHHHHHhCCCCCccCCCCCCCHHHHHHHhhccccccccCcccHHHHHHHHhcCccccccc
Q 040452 131 SANNYGKTQLYLAAKGRYSEMVIELLENSTSVSYEGPNGKTALHAAAMHFYYGKCLVCSSENWVIIAASLLNNKVIILKP 210 (316)
Q Consensus 131 ~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~ 210 (316)
..+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..++.+ ++++|++.+. ..+
T Consensus 19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~------------~v~~Ll~~ga--~~~ 84 (110)
T 2zgd_A 19 HMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLE------------VVKLLLEAGA--DVX 84 (110)
T ss_dssp ---CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH------------HHHHHHHTTC--CTT
T ss_pred ccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHH------------HHHHHHHcCC--Ccc
Confidence 34556777777777777777777777777777777777777777777777777 7777777766 455
Q ss_pred cccccCCcHHHHHHhcCCHHHHHHH
Q 040452 211 LFVVIGWTPIHYAAYYDQYQLIHML 235 (316)
Q Consensus 211 ~~~~~~~t~l~~A~~~~~~~~~~~L 235 (316)
..|..|.|||++|+..|+.+++++|
T Consensus 85 ~~d~~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 85 AQDKFGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred ccccCCCcHHHHHHHcCCHHHHHHh
Confidence 6666677777777777777666655
No 115
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=44.42 E-value=20 Score=18.62 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=13.4
Q ss_pred HHHHHHhcCCHHHHHHHHh
Q 040452 254 ALRLAAGQRHARTVKTILS 272 (316)
Q Consensus 254 ~l~~A~~~~~~~~v~~L~~ 272 (316)
-+..||+.|+++.++.|-.
T Consensus 16 qiyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 16 QMDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHH
Confidence 3567778888887777753
No 116
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=23.80 E-value=2.2e+02 Score=20.86 Aligned_cols=19 Identities=11% Similarity=-0.024 Sum_probs=10.5
Q ss_pred HHHHHHhcCCHHHHHHHHh
Q 040452 219 PIHYAAYYDQYQLIHMLLK 237 (316)
Q Consensus 219 ~l~~A~~~~~~~~~~~Ll~ 237 (316)
+..+|..+|..+..+.+++
T Consensus 121 A~~~A~t~g~~~~a~~~~~ 139 (177)
T 3mkq_B 121 AYAVAKANGDEAAASAFLE 139 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHH
Confidence 4455555666666655554
No 117
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=21.79 E-value=3.3e+02 Score=22.20 Aligned_cols=24 Identities=8% Similarity=-0.159 Sum_probs=10.3
Q ss_pred cccCCcHHHHHHhcCCHHHHHHHH
Q 040452 213 VVIGWTPIHYAAYYDQYQLIHMLL 236 (316)
Q Consensus 213 ~~~~~t~l~~A~~~~~~~~~~~Ll 236 (316)
|..|+..+..+...+..+..+.++
T Consensus 214 d~~Gn~ViQ~~l~~~~~~~~~~i~ 237 (351)
T 3gvo_A 214 DQYGNYVIQHVLEHGRPEDKSKIV 237 (351)
T ss_dssp STTHHHHHHHHHHHSCHHHHHHHH
T ss_pred CchHHHHHHHHHHhCchhhHHHHH
Confidence 344444444444444444333333
No 118
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=20.47 E-value=2.6e+02 Score=23.74 Aligned_cols=49 Identities=20% Similarity=0.261 Sum_probs=32.5
Q ss_pred HHHcCCHHHHHHHHhCCCCCCCCC-------------CCCCCchhHHHHhcCCHHHHHHHHh
Q 040452 109 AVCHGNVQVVKILTGQDPDYPYSA-------------NNYGKTQLYLAAKGRYSEMVIELLE 157 (316)
Q Consensus 109 A~~~~~~~~~~~Ll~~~~~~~~~~-------------~~~~~~~l~~a~~~~~~~~v~~Ll~ 157 (316)
.+..|+...|+..+..|.+..... -..|.|.+|.|++..+.+++-.|+.
T Consensus 29 gv~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~ 90 (454)
T 3zrh_A 29 GVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLT 90 (454)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhh
Confidence 334455555555555554432111 2348999999999999999999986
Done!