BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040453
         (547 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DKV|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa
           L. Japonica
 pdb|3IWR|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa
           L. Japonica
 pdb|3IWR|B Chain B, Crystal Structure Of Class I Chitinase From Oryza Sativa
           L. Japonica
          Length = 309

 Score = 35.8 bits (81), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 32/73 (43%)

Query: 20  ITPANMKSLAIQVITGRWFMVFASFLIMAAAGATYMFSLYSGDIKYALGYDQTTLNLLSF 79
           +TP   K  +  VITGRW    A      A G   + ++ +G ++   G D    N + F
Sbjct: 215 MTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGF 274

Query: 80  FKDLGANVGILSG 92
           ++      GI +G
Sbjct: 275 YQRYCGAFGIGTG 287


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.141    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,153,649
Number of Sequences: 62578
Number of extensions: 539191
Number of successful extensions: 1273
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1270
Number of HSP's gapped (non-prelim): 3
length of query: 547
length of database: 14,973,337
effective HSP length: 104
effective length of query: 443
effective length of database: 8,465,225
effective search space: 3750094675
effective search space used: 3750094675
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)