Query 040453
Match_columns 547
No_of_seqs 135 out of 640
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 13:41:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040453.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040453hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.8 9.8E-21 3.3E-25 199.1 17.6 378 31-523 21-409 (451)
2 3o7q_A L-fucose-proton symport 99.8 1.4E-19 4.8E-24 189.8 23.9 383 33-525 21-409 (438)
3 2gfp_A EMRD, multidrug resista 99.7 2E-17 6.9E-22 170.5 7.9 331 53-525 16-354 (375)
4 4aps_A DI-OR tripeptide H+ sym 99.6 9.1E-15 3.1E-19 156.1 21.6 383 58-523 35-448 (491)
5 2cfq_A Lactose permease; trans 99.5 2.4E-14 8.1E-19 151.0 9.6 159 359-524 212-376 (417)
6 2xut_A Proton/peptide symporte 99.4 1.1E-11 3.8E-16 133.3 17.7 144 32-183 10-165 (524)
7 4gc0_A D-xylose-proton symport 99.2 1.2E-10 4.2E-15 123.7 17.5 129 54-182 26-178 (491)
8 1pw4_A Glycerol-3-phosphate tr 98.5 5.7E-07 1.9E-11 93.8 13.3 152 365-524 26-182 (451)
9 4aps_A DI-OR tripeptide H+ sym 98.5 7.3E-07 2.5E-11 94.6 11.9 150 367-523 13-172 (491)
10 2gfp_A EMRD, multidrug resista 98.4 7.1E-07 2.4E-11 91.3 8.8 147 372-525 5-152 (375)
11 3o7q_A L-fucose-proton symport 98.2 3.6E-06 1.2E-10 87.5 11.0 126 389-521 48-177 (438)
12 2xut_A Proton/peptide symporte 98.1 6E-06 2E-10 88.4 10.2 150 366-522 11-173 (524)
13 2cfq_A Lactose permease; trans 98.0 4.7E-06 1.6E-10 87.3 6.2 151 363-522 3-163 (417)
14 4gc0_A D-xylose-proton symport 97.9 8.1E-05 2.8E-09 78.6 14.4 137 51-189 291-429 (491)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.85 E-value=9.8e-21 Score=199.06 Aligned_cols=378 Identities=15% Similarity=0.056 Sum_probs=244.8
Q ss_pred HhhhccHHHHHHHHHHHHhhcc-ccccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHH
Q 040453 31 QVITGRWFMVFASFLIMAAAGA-TYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGA 108 (547)
Q Consensus 31 ~~~~~Rw~~l~a~~~v~l~~Gt-~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~ 108 (547)
...+.||..+....+..+..+. .+.++.+-+.+.+++ +|..|..++.....++.. ..++.|.+.||+|+|.+++++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~ 99 (451)
T 1pw4_A 21 TYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL 99 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHH
Confidence 3455677777766666666554 478888899999999 999999998777777775 4899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCC-CCCcchhhhhHhhhhhhHHHHHHHHH
Q 040453 109 VLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFP-ESRGVVLGILKGYVGLSGAIITQLYR 187 (547)
Q Consensus 109 vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP-~~RG~v~Gi~~a~~GLSa~I~s~i~~ 187 (547)
++..++..+..+.... . .++|.+.+..++.|.+.+..+.+......++|| ++||.+.|+.....+++..+-..+..
T Consensus 100 ~~~~~~~~~~~~~~~~-~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 176 (451)
T 1pw4_A 100 ILAAAVMLFMGFVPWA-T--SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 176 (451)
T ss_dssp HHHHHHHHHHHHCHHH-H--SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHHHHhhhhc-c--ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998776541110 1 234555556667777888888888888999998 57999999988888887655443322
Q ss_pred HHhCCCchHHHHHHHHHHHHHHHHhhheeeecccccCCc-cchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHH
Q 040453 188 AFYGDDTKSLILFIGWLPAAISFAFLRTIRILKVIRQPN-ELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSA 266 (547)
Q Consensus 188 ~~f~~~~~~fllfla~~p~~v~li~~~~ir~~~~~~~~~-~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~ 266 (547)
.+.+. .+ .+..|. .. ++..++..+
T Consensus 177 ~l~~~--------------------------------~g~w~~~f~---~~----~~~~~~~~~---------------- 201 (451)
T 1pw4_A 177 LGMAW--------------------------------FNDWHAALY---MP----AFCAILVAL---------------- 201 (451)
T ss_dssp HHHHH--------------------------------TCCSTTCTH---HH----HHHHHHHHH----------------
T ss_pred HHHHH--------------------------------hccHHHHHH---HH----HHHHHHHHH----------------
Confidence 21110 01 111222 10 000000000
Q ss_pred HHHHHHHhhchhhhhhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcc
Q 040453 267 AIVMFLLFFPLVVVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWT 346 (547)
Q Consensus 267 ~~~i~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 346 (547)
+..+. .+ +++ +..+. .+ .++ .++ + ++. + .+
T Consensus 202 ---~~~~~------~~--------------~~~-~~~~~-~~-----~~~---~~~----~-~~~-------~-~~---- 231 (451)
T 1pw4_A 202 ---FAFAM------MR--------------DTP-QSCGL-PP-----IEE---YKN----D-YPD-------D-YN---- 231 (451)
T ss_dssp ---HHHHH------CC--------------CSS-TTTCC-CS-----CTT---TCC----C-------------------
T ss_pred ---HHHhh------cc--------------CCH-hhcCC-CC-----hhh---hcc----c-ccc-------c-ch----
Confidence 00000 00 000 00000 00 000 000 0 000 0 00
Q ss_pred cCCCCCCCCCCCcHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhh-cCCCCcchhhHHHHHHHHHhhhhhhcchh
Q 040453 347 TCFSPPDRGEDYTILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGS-LGYPKKSISTFVSLVSIWNYLGRVVSGFV 425 (547)
Q Consensus 347 ~~~~~~~~~~d~t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a-~g~~~~~a~~~Vsl~si~n~~GRl~~G~l 425 (547)
+..+++....+...++.+|++++|.+.+..++.......+......+.++ +|.+..+++...++.++.+.+|++..|++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 311 (451)
T 1pw4_A 232 EKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWM 311 (451)
T ss_dssp -------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000111112335788999999999998887766666677777888877 78888888899999999999999999999
Q ss_pred hhhh--hhhcCCChhHHHHHHHHHHHHHHHHHHhhc--c-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcch
Q 040453 426 SEIF--LAKYKFPRPLMLTIILLLSCIGHLLIAFNV--P-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNF 500 (547)
Q Consensus 426 sD~l--~~r~~~~r~~~l~~~~~~~~i~~lll~~~~--~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~ 500 (547)
+||+ ++ |........+..+++.+++.... . ..+.+...+.|++++........++.|.+..++.|+.+|+
T Consensus 312 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 386 (451)
T 1pw4_A 312 SDKVFRGN-----RGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGF 386 (451)
T ss_dssp HHHTSTTC-----HHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHH
T ss_pred HHHHhcCC-----chhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHH
Confidence 9987 43 22333323333335555444332 1 2344567889999999999999999999999999999999
Q ss_pred hccchhh-HHHHHHHHHHHHHhHH
Q 040453 501 GGAASPL-GSYLLNVRVAGHLYDK 523 (547)
Q Consensus 501 ~~~~~~~-gs~~l~~~l~G~~yd~ 523 (547)
......+ |. .+++.+.|.++|+
T Consensus 387 ~~~~~~~~g~-~~~~~~~g~l~~~ 409 (451)
T 1pw4_A 387 TGLFGYLGGS-VAASAIVGYTVDF 409 (451)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHS
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHh
Confidence 9887777 77 6688899999885
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.84 E-value=1.4e-19 Score=189.78 Aligned_cols=383 Identities=13% Similarity=0.147 Sum_probs=248.3
Q ss_pred hhccHHHHHHHHHHHHhhccc-cccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHH
Q 040453 33 ITGRWFMVFASFLIMAAAGAT-YMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVL 110 (547)
Q Consensus 33 ~~~Rw~~l~a~~~v~l~~Gt~-Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl 110 (547)
.+++|..++....+.++.|.. +.++.+-|.+++++|+|.+|+.++.....++.. ..++.|.+.||+|+|.+++++.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100 (438)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence 345566655555555555553 788888999999999999999998777777765 589999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCC-CCCcchhhhhHhhhhhhHHHHHHHHHHH
Q 040453 111 NFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFP-ESRGVVLGILKGYVGLSGAIITQLYRAF 189 (547)
Q Consensus 111 ~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP-~~RG~v~Gi~~a~~GLSa~I~s~i~~~~ 189 (547)
..++..+.+.. ... .++|.+++..++.|.+.+..+.++.....+++| ++||.+.|+.....+++..+-..+...+
T Consensus 101 ~~~~~~~~~~~--~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 176 (438)
T 3o7q_A 101 YALGAALFWPA--AEI--MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_dssp HHHHHHHHHHH--HHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHhc--ccc--ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998876432 122 456777777777888888888889888999998 5789999999999888877666544443
Q ss_pred h-CCCchHHHHHHHHHHHHHHHHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHH
Q 040453 190 Y-GDDTKSLILFIGWLPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAI 268 (547)
Q Consensus 190 f-~~~~~~fllfla~~p~~v~li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~ 268 (547)
. +..... .... ....+ ++..+.+........ -..|......
T Consensus 177 ~~~~~~~~-------~~~~--------~~~~~----~~~~~~~~~~~~~~w-~~~~~~~~~~------------------ 218 (438)
T 3o7q_A 177 ILSNVPHQ-------SQDV--------LDKMS----PEQLSAYKHSLVLSV-QTPYMIIVAI------------------ 218 (438)
T ss_dssp HHTSSCCC-------CHHH--------HHHSC----HHHHHHHHHHHHHHH-HHHHHHHHHH------------------
T ss_pred Hhcccccc-------cccc--------cccCC----cchhhhhhhhhhhhH-HHHHHHHHHH------------------
Confidence 3 210000 0000 00000 000000000000000 0000000000
Q ss_pred HHHHHhhchhhhhhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccC
Q 040453 269 VMFLLFFPLVVVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTC 348 (547)
Q Consensus 269 ~i~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 348 (547)
.+ ++...+.. . ..|+ ..++ + + +
T Consensus 219 ~~-~~~~~~~~-~--------------~~p~--~~~~---------~-----~-----~--------------------- 240 (438)
T 3o7q_A 219 VL-LVALLIML-T--------------KFPA--LQSD---------N-----H-----S--------------------- 240 (438)
T ss_dssp HH-HHHHHHHH-C--------------CCCC--CTTT---------C-----C-----C---------------------
T ss_pred HH-HHHHHHHH-H--------------cCCc--cccc---------c-----c-----c---------------------
Confidence 00 00000000 0 0110 0000 0 0 0
Q ss_pred CCCCCCCCCCcHHHhhccHHHHHHHHHHHHhhhchheeecchhhh-hhhc-CCCCcchhhHHHHHHHHHhhhhhhcchhh
Q 040453 349 FSPPDRGEDYTILQALFSLDMLILFFATICGVGGTLTAIDNLGQI-GGSL-GYPKKSISTFVSLVSIWNYLGRVVSGFVS 426 (547)
Q Consensus 349 ~~~~~~~~d~t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I-~~a~-g~~~~~a~~~Vsl~si~n~~GRl~~G~ls 426 (547)
++++.....+.++.+|++++|...+..++..+....+.+...++ .++. |.+..+++...++..+.+.+||++.|+++
T Consensus 241 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 319 (438)
T 3o7q_A 241 -DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLI 319 (438)
T ss_dssp -CSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000112356889999999999999888887777777888888 7775 88888889999999999999999999999
Q ss_pred hhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchh
Q 040453 427 EIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVPGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASP 506 (547)
Q Consensus 427 D~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~ 506 (547)
||+++| ..+.+..++.+++.+++.........+..++.|++++..+....+++.|.+..+ -++.-++...+ .
T Consensus 320 ~r~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~ 391 (438)
T 3o7q_A 320 SRFAPH------KVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVMT-I 391 (438)
T ss_dssp HHSCHH------HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHHHT-T
T ss_pred HHhcch------HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHHHH-H
Confidence 988654 344455555566665555443333455668999999999999999999999854 56666665543 3
Q ss_pred hHHHHHHHHHHHHHhHHHH
Q 040453 507 LGSYLLNVRVAGHLYDKEA 525 (547)
Q Consensus 507 ~gs~~l~~~l~G~~yd~~~ 525 (547)
+|. .+++.+.|.++|+..
T Consensus 392 ~g~-~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 392 IGG-GIVTPVMGFVSDAAG 409 (438)
T ss_dssp HHH-HHHHHHHHHHHHHHT
T ss_pred HHH-HHHHHHHHHHHHHhc
Confidence 665 668889999999865
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.69 E-value=2e-17 Score=170.47 Aligned_cols=331 Identities=12% Similarity=0.053 Sum_probs=219.4
Q ss_pred ccccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchH
Q 040453 53 TYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQV 131 (547)
Q Consensus 53 ~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~ 131 (547)
.+.++.+-|.+++++|+|.+|...+.....++.. ..++.|.+.||+|+|.++.++.++..++..++... .+.
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~ 88 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-------SSL 88 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-------HHH
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-------ccH
Confidence 3455566677889999999999998666667664 58999999999999999999999999998776543 345
Q ss_pred HHHHHHHHHhhcccccccchhhhhhhhcCC-CCCcchhhhhHhhhhhhHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 040453 132 WHMCLYICVGANSQSFANTGSLVTCVKNFP-ESRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGWLPAAISF 210 (547)
Q Consensus 132 ~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP-~~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~~~~fllfla~~p~~v~l 210 (547)
|.+....++.|.+.+..+++......+++| ++|+.+.++......++..+-..+...+ .+.
T Consensus 89 ~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l-~~~----------------- 150 (375)
T 2gfp_A 89 TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLL-DTM----------------- 150 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHS-SCH-----------------
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHh-----------------
Confidence 666666677778888888888888899996 6899999999888777765444332221 110
Q ss_pred HhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHhhchhhhhhHHhhhhhh
Q 040453 211 AFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLLFFPLVVVVIEEFKLWKS 290 (547)
Q Consensus 211 i~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll~~p~~~~~~~~~~~~~~ 290 (547)
...+..+.+ .++..++. .......
T Consensus 151 ------------------~~~~~~~~~---~~~~~~~~-------------------------~~~~~~~---------- 174 (375)
T 2gfp_A 151 ------------------WNWRACYLF---LLVLCAGV-------------------------TFSMARW---------- 174 (375)
T ss_dssp ------------------HHHHHHHHH---HHHHHHHH-------------------------HCCCCCS----------
T ss_pred ------------------ccHHHHHHH---HHHHHHHH-------------------------HHHHHHH----------
Confidence 001100000 00000000 0000000
Q ss_pred hhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCCCCCCCcHHHhhccHHHH
Q 040453 291 KQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTILQALFSLDML 370 (547)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~t~~Fw 370 (547)
-|+ ..++ + + + + +++ ..+.++.+|++++|
T Consensus 175 ------~~~--~~~~---------~-----------~--~-----------------~-~~~----~~~~~~~~~~~~~~ 202 (375)
T 2gfp_A 175 ------MPE--TRPV---------D-----------A--P-----------------R-TRL----LTSYKTLFGNSGFN 202 (375)
T ss_dssp ------SCC--CSTT---------T-----------C--C-----------------C-CCT----TTCSTHHHHHHHHH
T ss_pred ------Ccc--cCCC---------C-----------c--c-----------------c-ccH----HHHHHHHhcCcchH
Confidence 010 0000 0 0 0 0 000 11346788999999
Q ss_pred HHHHHHHHhhhchheeecchhhhhhh-cCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHH
Q 040453 371 ILFFATICGVGGTLTAIDNLGQIGGS-LGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSC 449 (547)
Q Consensus 371 ll~~~~~~~~g~Gl~~i~n~~~I~~a-~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~ 449 (547)
.+.+..++.......+......+.++ .|.++.+++...++.++...++++..|+++||.++ |.. .... ....
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~-----~~~-~~~~-~~~~ 275 (375)
T 2gfp_A 203 CYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST-----LMW-QSVI-CCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH-----HHH-HHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH-HHHH-HHHH
Confidence 99988877766666666667777776 78777778888999999999999999999998753 211 1111 1122
Q ss_pred HHHH--HHHh--h-ccchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHHH
Q 040453 450 IGHL--LIAF--N-VPGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDKE 524 (547)
Q Consensus 450 i~~l--ll~~--~-~~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~~ 524 (547)
++.. .+.. . ....+++..++.|+++|..+.....++.|.+. ++.|+.+|+......+|. .+++.+.|.++|..
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~-~~~~~~~g~l~~~~ 353 (375)
T 2gfp_A 276 AGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGS-GVLASLSAMLPQTG 353 (375)
T ss_dssp TSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHH-HCCSTTCTHHHHHH
T ss_pred HHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHH-HHHHHHHHHHhcCC
Confidence 2221 1111 1 11234457789999999999999999999998 899999999988888887 56777888888754
Q ss_pred H
Q 040453 525 A 525 (547)
Q Consensus 525 ~ 525 (547)
.
T Consensus 354 ~ 354 (375)
T 2gfp_A 354 Q 354 (375)
T ss_dssp H
T ss_pred c
Confidence 3
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.64 E-value=9.1e-15 Score=156.06 Aligned_cols=383 Identities=12% Similarity=0.052 Sum_probs=211.9
Q ss_pred cccHHHHHH-----hCCChhhhHHHHHHHHhhhh-hhchhhhhhcc-CCcHHHHHHHHHHHHHHHHHHHHHHhccccCch
Q 040453 58 LYSGDIKYA-----LGYDQTTLNLLSFFKDLGAN-VGILSGLINEI-TPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQ 130 (547)
Q Consensus 58 iys~~L~~~-----~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~-~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~ 130 (547)
...+.++++ +|+|.++..++.....++.. ..+++|.+.|| +|+|.++.+|.++..++..++.+ . .+
T Consensus 35 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~-----~--~~ 107 (491)
T 4aps_A 35 ILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL-----P--FG 107 (491)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS-----C--CS
T ss_pred HHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH-----h--hh
Confidence 344456666 99999999998766667765 47999999999 89999999999999998776532 1 34
Q ss_pred HHHHHHHHHHhhcccccccchhhhhhhhcCCC-C--CcchhhhhHhhhhhhHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 040453 131 VWHMCLYICVGANSQSFANTGSLVTCVKNFPE-S--RGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGWLPAA 207 (547)
Q Consensus 131 ~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~--RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~~~~fllfla~~p~~ 207 (547)
.+.+.+..++.|.+.+....+......++||+ + ||.+.++......++..+-..+...+.+...-...+.+.....+
T Consensus 108 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~ 187 (491)
T 4aps_A 108 ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMF 187 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 55566666667778888877888888899974 5 66677776666677766555555444332111222222222233
Q ss_pred HHHHhhheeeec--ccccC---Cc-cchhhHH-HHHHH---HHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHhhch
Q 040453 208 ISFAFLRTIRIL--KVIRQ---PN-ELKVFYN-FLYIS---LALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLLFFPL 277 (547)
Q Consensus 208 v~li~~~~ir~~--~~~~~---~~-~~~~f~~-~~~~~---~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll~~p~ 277 (547)
++++...+.++. +++.+ ++ +.+.... .-..+ ...++.+... ...+..+..+..... .......+.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~ 262 (491)
T 4aps_A 188 IGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVM-NLVGWNSLPAYINLL----TIVAIAIPV 262 (491)
T ss_dssp HHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHH-HHHSSCCTTHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHH-HhccCcccccchhhh----hHHHHHHHH
Confidence 333333322221 11111 00 0110000 00000 0001111111 111111111100000 000000000
Q ss_pred hhhhhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCCCCCC
Q 040453 278 VVVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGED 357 (547)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d 357 (547)
.. ....+ +++ . ..+
T Consensus 263 ~~----~~~~~-------~~~-------------------------------------------------~-~~~----- 276 (491)
T 4aps_A 263 FY----FAWMI-------SSV-------------------------------------------------K-VTS----- 276 (491)
T ss_dssp HH----HHHHC---------------------------------------------------------------------
T ss_pred HH----HHHHh-------hcc-------------------------------------------------c-ccH-----
Confidence 00 00000 000 0 000
Q ss_pred CcHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhh-cCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCC
Q 040453 358 YTILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGS-LGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFP 436 (547)
Q Consensus 358 ~t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a-~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~ 436 (547)
.+.-+...+|.+++..++.........+......++ .+.+..+.+...++.++...++.+..|+++||++||.. .
T Consensus 277 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~-~ 352 (491)
T 4aps_A 277 ---TEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQP-S 352 (491)
T ss_dssp --------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC----
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCC-C
Confidence 000122334555544443333333334444445554 45544566777889999999999999999999987643 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh----------ccchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchh
Q 040453 437 RPLMLTIILLLSCIGHLLIAFN----------VPGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASP 506 (547)
Q Consensus 437 r~~~l~~~~~~~~i~~lll~~~----------~~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~ 506 (547)
+...+.+..++.+++.+++... ....+.+..++.|++.+........++.|.+..++-|+..|+..+...
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 432 (491)
T 4aps_A 353 SPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSS 432 (491)
T ss_dssp CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3344445555666665544331 112345677899999999999999999999999999999999988888
Q ss_pred hHHHHHHHHHHHHHhHH
Q 040453 507 LGSYLLNVRVAGHLYDK 523 (547)
Q Consensus 507 ~gs~~l~~~l~G~~yd~ 523 (547)
+|. .+++.+.+.+.|.
T Consensus 433 ~g~-~i~~~~~~~~~~~ 448 (491)
T 4aps_A 433 VGS-ALNAQLVTLYNAK 448 (491)
T ss_dssp HHH-HHHHHHGGGGGGS
T ss_pred HHH-HHHHHHHHHHhcc
Confidence 887 5677777777654
No 5
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.51 E-value=2.4e-14 Score=151.04 Aligned_cols=159 Identities=11% Similarity=0.060 Sum_probs=103.4
Q ss_pred cHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhhc-C---CCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcC
Q 040453 359 TILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGSL-G---YPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYK 434 (547)
Q Consensus 359 t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~-g---~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~ 434 (547)
+.++.+|++++|.+++..++....-..+........++. + .+....+...++..+.+.++++..|+++||+++|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~- 290 (417)
T 2cfq_A 212 LALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN- 290 (417)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH-
Confidence 356788999999887664433221111112233333332 2 11223355667778899999999999999987542
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchh-ccchhhHHHHH
Q 040453 435 FPRPLMLTIILLLSCIGHLLIAFNVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFG-GAASPLGSYLL 512 (547)
Q Consensus 435 ~~r~~~l~~~~~~~~i~~lll~~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~-~~~~~~gs~~l 512 (547)
.+.+..++.+++.+++..... ..+.+...+.+++++........+++|.+..+.-|+.+|+. ..+..+|. .+
T Consensus 291 -----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~-~~ 364 (417)
T 2cfq_A 291 -----ALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAM-IF 364 (417)
T ss_dssp -----HHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHH-HH
T ss_pred -----HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHH-HH
Confidence 333444555555544443322 23444556678888777777788999999999999999995 66777777 56
Q ss_pred HHHHHHHHhHHH
Q 040453 513 NVRVAGHLYDKE 524 (547)
Q Consensus 513 ~~~l~G~~yd~~ 524 (547)
+|.+.|.++|+.
T Consensus 365 gp~l~G~l~~~~ 376 (417)
T 2cfq_A 365 MSVLAGNMYESI 376 (417)
T ss_dssp HTHHHHTHHHHS
T ss_pred hhhhHHHHHHhc
Confidence 788999999864
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.36 E-value=1.1e-11 Score=133.32 Aligned_cols=144 Identities=7% Similarity=-0.058 Sum_probs=98.2
Q ss_pred hhhccHHHHHHHHHHHHhhccccccccccHHHHHHhC------CChhhhHHHHHHHHhhhh-hhchhhhhhccC-CcHHH
Q 040453 32 VITGRWFMVFASFLIMAAAGATYMFSLYSGDIKYALG------YDQTTLNLLSFFKDLGAN-VGILSGLINEIT-PPWVV 103 (547)
Q Consensus 32 ~~~~Rw~~l~a~~~v~l~~Gt~Y~fSiys~~L~~~~~------~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~-Gp~~~ 103 (547)
..++-|..++...+...+.... .+...+.+++++| +|..+...+.....++.. ..+++|.+.||+ |+|.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~ 87 (524)
T 2xut_A 10 WPRQIPYIIASEACERFSFYGM--RNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT 87 (524)
T ss_dssp ---CCTHHHHHHHHHHHHHHHH--HHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 3444466555555544433221 2333445778899 999999997666666665 478999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhh---hHhhhhhhH
Q 040453 104 LVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGI---LKGYVGLSG 179 (547)
Q Consensus 104 l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi---~~a~~GLSa 179 (547)
+.++.++..+++.++.+. + .+.+.+.+..++.|.+.+..+.+......++||+ +||.+.++ ......+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~ 161 (524)
T 2xut_A 88 ILWLSLIYCVGHAFLAIF-----E-HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGS 161 (524)
T ss_dssp HHHHHHHHHHHHHHHHHT-----S-SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-----c-ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHH
Confidence 999999999988766432 1 1455555556666777777777888888899975 68877776 555556655
Q ss_pred HHHH
Q 040453 180 AIIT 183 (547)
Q Consensus 180 ~I~s 183 (547)
.+-.
T Consensus 162 ~~g~ 165 (524)
T 2xut_A 162 FFAS 165 (524)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 7
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.24 E-value=1.2e-10 Score=123.74 Aligned_cols=129 Identities=16% Similarity=0.096 Sum_probs=86.5
Q ss_pred ccccccc---HHHHHHhCC----Ch----hhhHHHHHHHHhhhhh-hchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHH
Q 040453 54 YMFSLYS---GDIKYALGY----DQ----TTLNLLSFFKDLGANV-GILSGLINEITPPWVVLVLGAVLNFFGYFMIWLA 121 (547)
Q Consensus 54 Y~fSiys---~~L~~~~~~----sq----s~l~~is~~~~vG~~~-gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~ 121 (547)
|..++++ +.+++.++. +. ++..++..+..+|..+ .++.|.+.||+|+|.+++++.++..+|-.+....
T Consensus 26 yd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~ 105 (491)
T 4gc0_A 26 YDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWP 105 (491)
T ss_dssp HHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3345554 455666643 22 2333454555677665 5899999999999999999999998886654321
Q ss_pred Hhccc-----------cCchHHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHH
Q 040453 122 VTKKI-----------ARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAII 182 (547)
Q Consensus 122 ~~g~i-----------~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~ 182 (547)
..+.. -..+++++.+.=++.|.|.+..+..+..-...+.|. +||...++...+..++..+-
T Consensus 106 ~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~ 178 (491)
T 4gc0_A 106 ELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLV 178 (491)
T ss_dssp TTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhh
Confidence 11100 124567777777778888888877888888899975 68999988776665554433
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.53 E-value=5.7e-07 Score=93.79 Aligned_cols=152 Identities=14% Similarity=0.089 Sum_probs=118.0
Q ss_pred ccHHHHHHHHHHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHH
Q 040453 365 FSLDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTII 444 (547)
Q Consensus 365 ~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~ 444 (547)
+.+.++.+++..++....-.++......+.+++ .+..+.+...++..+...++.+.+|+++||++|| .++.+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r------~~l~~~ 98 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR------VFLPAG 98 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCch------HHHHHH
Confidence 345555555555554443334445567777788 8888999999999999999999999999988754 355666
Q ss_pred HHHHHHHHHHHHh----hcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHH
Q 040453 445 LLLSCIGHLLIAF----NVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGH 519 (547)
Q Consensus 445 ~~~~~i~~lll~~----~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~ 519 (547)
.++.+++.++... ... ..++++-++.|++.|.......++++|++..|+-++..|+...+..+|. ++++.+.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~~~~~ 177 (451)
T 1pw4_A 99 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGG-GIPPLLFLL 177 (451)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHH-TSHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 6677777766655 443 4567788999999999999999999999999999999999988888887 667778877
Q ss_pred HhHHH
Q 040453 520 LYDKE 524 (547)
Q Consensus 520 ~yd~~ 524 (547)
+.+..
T Consensus 178 l~~~~ 182 (451)
T 1pw4_A 178 GMAWF 182 (451)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 77543
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.45 E-value=7.3e-07 Score=94.65 Aligned_cols=150 Identities=17% Similarity=0.181 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHhhhchheeecchhhhhhh------cCCCCcchhhHHHHHHHHHhhhhhhcchhhhh-hhhhcCCChhH
Q 040453 367 LDMLILFFATICGVGGTLTAIDNLGQIGGS------LGYPKKSISTFVSLVSIWNYLGRVVSGFVSEI-FLAKYKFPRPL 439 (547)
Q Consensus 367 ~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a------~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~-l~~r~~~~r~~ 439 (547)
+.+|.+++..++....-..+.....+..++ +|.+..+.+...++..+...++++.+|+++|| ++|| .
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r------~ 86 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGAR------P 86 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH------H
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch------H
Confidence 467888777666555444454555555554 79888889999999999999999999999998 7754 3
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCc--hhhhcchhccchhhHHHHHHHHH
Q 040453 440 MLTIILLLSCIGHLLIAFNVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKY--YSTLYNFGGAASPLGSYLLNVRV 516 (547)
Q Consensus 440 ~l~~~~~~~~i~~lll~~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~--~g~nyg~~~~~~~~gs~~l~~~l 516 (547)
.+.+..++.+++.++...... ..++++.++.|++.|......+++++|+|..++ -++.+++...+..+|. .+++.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~ 165 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGA-FIAPLI 165 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHH-HHHHHH
Confidence 556666777777766665543 456677899999999999999999999999877 6677777777777776 567777
Q ss_pred HHHHhHH
Q 040453 517 AGHLYDK 523 (547)
Q Consensus 517 ~G~~yd~ 523 (547)
.|.+.|.
T Consensus 166 ~~~l~~~ 172 (491)
T 4aps_A 166 VGAAQEA 172 (491)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 7777664
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.36 E-value=7.1e-07 Score=91.25 Aligned_cols=147 Identities=12% Similarity=0.084 Sum_probs=111.2
Q ss_pred HHHHHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHH
Q 040453 372 LFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIG 451 (547)
Q Consensus 372 l~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~ 451 (547)
+++..++....-.++......+.+++|.++.+.+...++..+.+.++++..|+++||++||+. +....++.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~------~~~~~~~~~~~ 78 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPV------ILVGMSIFMLA 78 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCC------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh------HHHHHHHHHHH
Confidence 334444333333344455667788899998899999999999999999999999999886532 22344444455
Q ss_pred HHHHHhhc-cchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHHHH
Q 040453 452 HLLIAFNV-PGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDKEA 525 (547)
Q Consensus 452 ~lll~~~~-~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~~~ 525 (547)
.++....+ ...+++..++.|++.|.......++++|++..|+.++..++......+|. ++++.+.+.+.|...
T Consensus 79 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~ 152 (375)
T 2gfp_A 79 TLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSP-LLAPLIGGLLDTMWN 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHH-HHHHHHHHHSSCHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHhcc
Confidence 54444333 24466678899999999999999999999999999999999998888887 678888888887643
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.24 E-value=3.6e-06 Score=87.48 Aligned_cols=126 Identities=15% Similarity=0.084 Sum_probs=103.3
Q ss_pred chhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHH---Hhhcc-chHH
Q 040453 389 NLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLI---AFNVP-GGLY 464 (547)
Q Consensus 389 n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll---~~~~~-~~l~ 464 (547)
-..++.+++|.++.+.+...++..+...++.+.+|+++||++|| ..+.+..++.+++.++. ..... ..++
T Consensus 48 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r------~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 121 (438)
T 3o7q_A 48 LLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK------AGIITGLFLYALGAALFWPAAEIMNYTLFL 121 (438)
T ss_dssp HHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHH------HHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch------HHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 35556778999999999999999999999999999999988755 35566666666676655 43333 3456
Q ss_pred HHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHh
Q 040453 465 VASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLY 521 (547)
Q Consensus 465 ~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~y 521 (547)
++-++.|++.|.......++++|++..|+-++..|+......+|. ++++.+.+.+.
T Consensus 122 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~~~~~l~ 177 (438)
T 3o7q_A 122 VGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGA-IIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHH-HHHHHHTTHHH
T ss_pred HHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 678999999999999999999999999999999999988888887 66777887776
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.14 E-value=6e-06 Score=88.42 Aligned_cols=150 Identities=16% Similarity=0.198 Sum_probs=105.6
Q ss_pred cHHHHHHHHHHHHhhhchheeecchhhh-hhhcC------CCCcchhhHHHHHHHHHhhhhhhcchhhhhh-hhhcCCCh
Q 040453 366 SLDMLILFFATICGVGGTLTAIDNLGQI-GGSLG------YPKKSISTFVSLVSIWNYLGRVVSGFVSEIF-LAKYKFPR 437 (547)
Q Consensus 366 t~~Fwll~~~~~~~~g~Gl~~i~n~~~I-~~a~g------~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l-~~r~~~~r 437 (547)
++.+|++++..++...+-.++...+... .+++| .+..+.+...++..+...++.+..|+++||+ +||
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r----- 85 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY----- 85 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSH-----
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----
Confidence 4567777776666544444444555554 44678 8888899999999999999999999999987 654
Q ss_pred hHHHHHHHHHHHHHHHHHHhhc-c-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhh---hcchhccchhhHHHHH
Q 040453 438 PLMLTIILLLSCIGHLLIAFNV-P-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYST---LYNFGGAASPLGSYLL 512 (547)
Q Consensus 438 ~~~l~~~~~~~~i~~lll~~~~-~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~---nyg~~~~~~~~gs~~l 512 (547)
..+.+..++.+++.++..... . ..+++..++.|++.|......+++++|.|..++-++ .|++...+..+|. .+
T Consensus 86 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~-~~ 163 (524)
T 2xut_A 86 -NTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGS-FF 163 (524)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHH-HH
T ss_pred -HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHH-HH
Confidence 344555666666666655543 2 345667889999999999999999999999887753 4444555555555 44
Q ss_pred HHHHHHHHhH
Q 040453 513 NVRVAGHLYD 522 (547)
Q Consensus 513 ~~~l~G~~yd 522 (547)
++.+.|.+.|
T Consensus 164 g~~~~~~l~~ 173 (524)
T 2xut_A 164 ASLSMPLLLK 173 (524)
T ss_dssp HHHTSTHHHH
T ss_pred HHHHHHHHhc
Confidence 5555555554
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.01 E-value=4.7e-06 Score=87.33 Aligned_cols=151 Identities=15% Similarity=0.134 Sum_probs=88.5
Q ss_pred hhccHHHHHHHHHHHHhhhchheeecchhhhhh-hcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHH
Q 040453 363 ALFSLDMLILFFATICGVGGTLTAIDNLGQIGG-SLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLML 441 (547)
Q Consensus 363 ~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~-a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l 441 (547)
.+|+++||.+....++....-.++..-.....+ ++|.++.+.+..+++..+...++++.+|+++||++||+ ....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~----~l~~ 78 (417)
T 2cfq_A 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRK----YLLW 78 (417)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCC----HHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH----HHHH
Confidence 578999999988766554443344555555455 47999999999999999999999999999999998763 2222
Q ss_pred HHHHHHHHH---HHHHHHhhc--cchHHHHHHHH----HhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHH
Q 040453 442 TIILLLSCI---GHLLIAFNV--PGGLYVASIII----GFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLL 512 (547)
Q Consensus 442 ~~~~~~~~i---~~lll~~~~--~~~l~~~~~li----G~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l 512 (547)
. .++..+ ..+...... ...++....+. |++++....+....+.|. .|+.+..||.......+|. .+
T Consensus 79 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~-~~ 153 (417)
T 2cfq_A 79 I--ITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV--SRRSNFEFGRARMFGCVGW-AL 153 (417)
T ss_dssp H--HHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH--HHHHTCCHHHHSSSTTTHH-HH
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh--hhhcccchHHHHHHHHHHH-HH
Confidence 1 111111 111111100 01122222333 333444444444444432 2455666666655556655 55
Q ss_pred HHHHHHHHhH
Q 040453 513 NVRVAGHLYD 522 (547)
Q Consensus 513 ~~~l~G~~yd 522 (547)
++.+.|.+.|
T Consensus 154 ~~~l~~~l~~ 163 (417)
T 2cfq_A 154 GASIVGIMFT 163 (417)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6667777765
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.94 E-value=8.1e-05 Score=78.61 Aligned_cols=137 Identities=16% Similarity=0.136 Sum_probs=90.6
Q ss_pred ccccccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCc
Q 040453 51 GATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARP 129 (547)
Q Consensus 51 Gt~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~ 129 (547)
...+....|.+.+.+..+.+..+....+....+... ..++++++.||+|+|..++.+.....++.+.+........+ .
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 369 (491)
T 4gc0_A 291 VGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP-G 369 (491)
T ss_dssp TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCC-H
T ss_pred hhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccc-h
Confidence 345677789999999999888776655444444443 47899999999999999999998888877665544433321 1
Q ss_pred hHHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHHHHHHHHH
Q 040453 130 QVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAIITQLYRAF 189 (547)
Q Consensus 130 ~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~s~i~~~~ 189 (547)
....++.+....+.+.++. ...-.-..+-||. .|+++.|+..+..-+++.+.+.+...+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l 429 (491)
T 4gc0_A 370 IVALLSMLFYVAAFAMSWG-PVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMM 429 (491)
T ss_dssp HHHHHHHHHHHHHHHTTTT-HHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHH-HHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222333333333333332 1223445688996 599999999888778887777665443
Done!