BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040456
(146 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A2WY46|EAR1_ORYSI Protein terminal ear1 homolog OS=Oryza sativa subsp. indica GN=PLA2
PE=2 SV=1
Length = 680
Score = 126 bits (316), Expect = 5e-29, Method: Composition-based stats.
Identities = 69/145 (47%), Positives = 93/145 (64%), Gaps = 8/145 (5%)
Query: 1 MIKNIPNRFKRHDLLQILDNHCWAENMKAKLH-SDPCR--SEYDFLYLPMDFCHGANLGY 57
MI+NIPN++ + LL +LDNHC N + + D + S YDFLYLP+DF + N+GY
Sbjct: 458 MIRNIPNKYSQKLLLNMLDNHCILSNQQIEASCEDEAQPFSSYDFLYLPIDFNNKCNVGY 517
Query: 58 AFVNFTTSVAAVRFAKAFNKSRWE---AQWLEFLTSACGDQGMDALKIHFQEKCFNCHTD 114
FVN T+ AAVR KAF+K WE ++ + +T A QG+DALK HF+ F C +D
Sbjct: 518 GFVNLTSPEAAVRLYKAFHKQPWEVFNSRKICQVTYA-RVQGLDALKEHFKNSKFPCDSD 576
Query: 115 SYLPVILAPPRDGWMRTRPT-IVGR 138
YLPV+ +PPRDG + T P +VGR
Sbjct: 577 EYLPVVFSPPRDGKLLTEPVPLVGR 601
>sp|Q0JGS5|EAR1_ORYSJ Protein terminal ear1 homolog OS=Oryza sativa subsp. japonica
GN=PLA2 PE=2 SV=1
Length = 683
Score = 126 bits (316), Expect = 6e-29, Method: Composition-based stats.
Identities = 69/145 (47%), Positives = 93/145 (64%), Gaps = 8/145 (5%)
Query: 1 MIKNIPNRFKRHDLLQILDNHCWAENMKAKLH-SDPCR--SEYDFLYLPMDFCHGANLGY 57
MI+NIPN++ + LL +LDNHC N + + D + S YDFLYLP+DF + N+GY
Sbjct: 461 MIRNIPNKYSQKLLLNMLDNHCILSNQQIEASCEDEAQPFSSYDFLYLPIDFNNKCNVGY 520
Query: 58 AFVNFTTSVAAVRFAKAFNKSRWE---AQWLEFLTSACGDQGMDALKIHFQEKCFNCHTD 114
FVN T+ AAVR KAF+K WE ++ + +T A QG+DALK HF+ F C +D
Sbjct: 521 GFVNLTSPEAAVRLYKAFHKQPWEVFNSRKICQVTYA-RVQGLDALKEHFKNSKFPCDSD 579
Query: 115 SYLPVILAPPRDGWMRTRPT-IVGR 138
YLPV+ +PPRDG + T P +VGR
Sbjct: 580 EYLPVVFSPPRDGKLLTEPVPLVGR 604
>sp|Q652K6|OML6_ORYSJ Protein MEI2-like 6 OS=Oryza sativa subsp. japonica GN=ML6 PE=2
SV=1
Length = 323
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 78/145 (53%), Gaps = 7/145 (4%)
Query: 1 MIKNIPNRFKRHDLLQILDNHCWAENMK-----AKLHSDPCRSEYDFLYLPMDFCHGANL 55
MI+NIPN+F + L+ ILD HC EN K +SEYDF Y+P+DF G N
Sbjct: 173 MIRNIPNKFLKARLMAILDQHCADENGKCHRRGGGGGRSVVKSEYDFFYVPIDFKTGFNK 232
Query: 56 GYAFVNFTTSVAAVRFAKAFNKSRWEAQWLEFL--TSACGDQGMDALKIHFQEKCFNCHT 113
GYAFVN TT+ AA R RW+A + QG+DA HF CF C T
Sbjct: 233 GYAFVNMTTATAARRLRAFLQDHRWDAAMSGKVCDVVPAAIQGLDAFVAHFSASCFPCRT 292
Query: 114 DSYLPVILAPPRDGWMRTRPTIVGR 138
+LPV PPRDG +T+ +VGR
Sbjct: 293 KEFLPVWFEPPRDGEQQTKAHVVGR 317
>sp|O65001|TE1_MAIZE Protein terminal ear1 OS=Zea mays GN=TE1 PE=2 SV=1
Length = 656
Score = 116 bits (290), Expect = 5e-26, Method: Composition-based stats.
Identities = 65/143 (45%), Positives = 84/143 (58%), Gaps = 6/143 (4%)
Query: 1 MIKNIPNRFKRHDLLQILDNHCWAEN--MKAKLHSDPCRSEYDFLYLPMDFCHGANLGYA 58
MI+NIPN++ + LL +LDNHC N + A P S YDF+YLP+DF + N+GY
Sbjct: 444 MIRNIPNKYSQKLLLNMLDNHCIQSNEWIVASGEEQPF-SAYDFVYLPIDFNNKCNVGYG 502
Query: 59 FVNFTTSVAAVRFAKAFNKSRWEAQWLEFL--TSACGDQGMDALKIHFQEKCFNCHTDSY 116
FVN T+ A VR KAF+K WE + + QG++ALK HF+ F C +D Y
Sbjct: 503 FVNLTSPEARVRLYKAFHKQPWEVYNSRKICQVTYARVQGLEALKEHFKNSKFPCDSDEY 562
Query: 117 LPVILAPPRDGWMRTRPT-IVGR 138
LPV +P RDG T P IVGR
Sbjct: 563 LPVAFSPARDGKELTDPVPIVGR 585
>sp|Q6ET49|OML7_ORYSJ Protein MEI2-like 7 OS=Oryza sativa subsp. japonica GN=OML7 PE=2
SV=1
Length = 389
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 77/137 (56%), Gaps = 11/137 (8%)
Query: 1 MIKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFC-----HGANL 55
M++NIPN+ R D++++LD+HC A + + R+EYD +Y+ MDF +N+
Sbjct: 219 MVRNIPNKLTRSDMVRLLDDHC-ARENRRRGRGGEPRAEYDLVYVRMDFGMCNKERSSNM 277
Query: 56 GYAFVNFTTSVAAVRFAKAFNKSRWEAQWLE----FLTSACGDQGMDALKIHFQEKC-FN 110
GYAFVNFTT+ AA +A + RW+ + A QG DAL HF +
Sbjct: 278 GYAFVNFTTAEAARGLQRALHGCRWKRSAFDSGKIIDIRAARIQGKDALVRHFGRTTYYE 337
Query: 111 CHTDSYLPVILAPPRDG 127
C TD YLP + +PPRDG
Sbjct: 338 CDTDEYLPAVFSPPRDG 354
>sp|Q8W4I9|AML1_ARATH Protein MEI2-like 1 OS=Arabidopsis thaliana GN=ML1 PE=1 SV=1
Length = 915
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 45/108 (41%), Positives = 57/108 (52%), Gaps = 18/108 (16%)
Query: 1 MIKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFV 60
MIKNIPN++ LL +D HC + YDFLYLP+DF + N+GYAF+
Sbjct: 747 MIKNIPNKYTSKMLLSAIDEHC--------------KGTYDFLYLPIDFKNKCNVGYAFI 792
Query: 61 NFTTSVAAVRFAKAFNKSRWE---AQWLEFLTSACGDQGMDALKIHFQ 105
N V F KAFN +WE ++ + LT A QG AL HFQ
Sbjct: 793 NLIEPEKIVPFFKAFNGKKWEKFNSEKVATLTYA-RIQGKTALIAHFQ 839
>sp|Q9LYN7|AML4_ARATH Protein MEI2-like 4 OS=Arabidopsis thaliana GN=ML4 PE=1 SV=1
Length = 907
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 45/107 (42%), Positives = 56/107 (52%), Gaps = 16/107 (14%)
Query: 1 MIKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFV 60
MIKNIPN++ LL +D +C + YDFLYLP+DF + N+GYAF+
Sbjct: 745 MIKNIPNKYTSKMLLAAIDEYC--------------KGTYDFLYLPIDFKNKCNVGYAFI 790
Query: 61 NFTTSVAAVRFAKAFNKSRWEAQWLEFLTS-ACGD-QGMDALKIHFQ 105
N V F KAFN +WE E + S A G QG AL HFQ
Sbjct: 791 NLIEPENIVPFYKAFNGKKWEKFNSEKVASLAYGRIQGKSALIAHFQ 837
>sp|Q75M35|OML3_ORYSJ Protein MEI2-like 3 OS=Oryza sativa subsp. japonica GN=ML3 PE=2
SV=2
Length = 955
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 43/108 (39%), Positives = 55/108 (50%), Gaps = 18/108 (16%)
Query: 1 MIKNIPNRFKRHDLLQILD-NHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAF 59
MIKNIPN++ LL ++D NH R YDF+YLP+DF + N+GYAF
Sbjct: 783 MIKNIPNKYNCKLLLAVIDENH---------------RGTYDFIYLPIDFKNKCNVGYAF 827
Query: 60 VNFTTSVAAVRFAKAFNKSRWEAQWLEFLTSACGD--QGMDALKIHFQ 105
+N T + F K FN +WE E + S QG AL HFQ
Sbjct: 828 INMTDPQHIIPFYKTFNGKKWEKFNSEKVASLAYARIQGRSALIAHFQ 875
>sp|Q6ZI17|OML2_ORYSJ Protein MEI2-like 2 OS=Oryza sativa subsp. japonica GN=ML2 PE=2
SV=1
Length = 848
Score = 69.7 bits (169), Expect = 6e-12, Method: Composition-based stats.
Identities = 42/107 (39%), Positives = 55/107 (51%), Gaps = 16/107 (14%)
Query: 1 MIKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFV 60
MIKNIPN++ LL +D + H + YDF YLP+DF + N+GYAF+
Sbjct: 688 MIKNIPNKYTSKMLLAAID----------EFH----KGTYDFFYLPIDFKNKCNVGYAFI 733
Query: 61 NFTTSVAAVRFAKAFNKSRWEAQWLEFLTSACGD--QGMDALKIHFQ 105
N + V V F +AFN +WE E + S QG AL HFQ
Sbjct: 734 NMISPVHIVSFYQAFNGKKWEKFNSEKVASLAYARIQGRTALISHFQ 780
>sp|Q64M78|OML4_ORYSJ Protein MEI2-like 4 OS=Oryza sativa subsp. japonica GN=ML4 PE=2
SV=1
Length = 1001
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 42/107 (39%), Positives = 54/107 (50%), Gaps = 16/107 (14%)
Query: 1 MIKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFV 60
MIKNIPN++ LL +D EN K YDF+YLP+DF + N+GYAF+
Sbjct: 833 MIKNIPNKYTSKMLLAAID-----ENHKGT---------YDFIYLPIDFKNKCNVGYAFI 878
Query: 61 NFTTSVAAVRFAKAFNKSRWEAQWLEFLTSACGD--QGMDALKIHFQ 105
N T + F + FN +WE E + S QG AL HFQ
Sbjct: 879 NMTNPQHIIPFYQTFNGKKWEKFNSEKVASLAYARIQGKSALIAHFQ 925
>sp|Q6EQX3|OML5_ORYSJ Protein MEI2-like 5 OS=Oryza sativa subsp. japonica GN=ML5 PE=2
SV=1
Length = 811
Score = 67.4 bits (163), Expect = 3e-11, Method: Composition-based stats.
Identities = 42/125 (33%), Positives = 58/125 (46%), Gaps = 16/125 (12%)
Query: 1 MIKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFV 60
MIKNIPN++ + LL+++D + YDF YLP+DF + N+GYAF+
Sbjct: 661 MIKNIPNKYTSNMLLEVID--------------ETHEGTYDFFYLPIDFKNKCNVGYAFI 706
Query: 61 NFTTSVAAVRFAKAFNKSRWEAQWLEFLTSACGD--QGMDALKIHFQEKCFNCHTDSYLP 118
N + V F KAF +WE E + S QG AL HFQ P
Sbjct: 707 NMASPGYIVSFFKAFAGRKWEKFNSEKVVSLAYARIQGKAALVNHFQNSSLMNEDKRCRP 766
Query: 119 VILAP 123
++ P
Sbjct: 767 MLFDP 771
>sp|Q8VWF5|AML5_ARATH Protein MEI2-like 5 OS=Arabidopsis thaliana GN=ML5 PE=1 SV=1
Length = 800
Score = 66.6 bits (161), Expect = 5e-11, Method: Composition-based stats.
Identities = 42/128 (32%), Positives = 58/128 (45%), Gaps = 16/128 (12%)
Query: 1 MIKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFV 60
MIKNIPN++ LL +D + + Y+FLYLP+DF + N+GYAF+
Sbjct: 656 MIKNIPNKYTSKMLLAAID--------------EKNQGTYNFLYLPIDFKNKCNVGYAFI 701
Query: 61 NFTTSVAAVRFAKAFNKSRWEAQWLEFLTSACGD--QGMDALKIHFQEKCFNCHTDSYLP 118
N + F +AFN +WE E + S QG AL HFQ P
Sbjct: 702 NMLNPELIIPFYEAFNGKKWEKFNSEKVASLAYARIQGKSALIAHFQNSSLMNEDMRCRP 761
Query: 119 VILAPPRD 126
+I P +
Sbjct: 762 IIFDTPNN 769
>sp|Q9SVV9|AML3_ARATH Protein MEI2-like 3 OS=Arabidopsis thaliana GN=ML3 PE=2 SV=2
Length = 759
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/107 (36%), Positives = 54/107 (50%), Gaps = 16/107 (14%)
Query: 1 MIKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFV 60
MIKNIPN++ R+ LL +D + YDFLYLP+DF + N+GYAF+
Sbjct: 616 MIKNIPNKYTRNMLLAAID--------------EKNSGTYDFLYLPIDFKNKCNVGYAFI 661
Query: 61 NFTTSVAAVRFAKAFNKSRWEAQWLEFLTSACGD--QGMDALKIHFQ 105
N + + +AFN +W+ E + S QG AL HFQ
Sbjct: 662 NMVSPKFTIALYEAFNGKKWDKFNSEKVASLAYARIQGKAALIAHFQ 708
>sp|P08965|MEI2_SCHPO Meiosis protein mei2 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mei2 PE=1 SV=1
Length = 750
Score = 62.8 bits (151), Expect = 7e-10, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 58/127 (45%), Gaps = 24/127 (18%)
Query: 1 MIKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFV 60
MIKNIPN+F + Q+L ++ N + YDFLYL +DF + N+GYAF+
Sbjct: 600 MIKNIPNKFTQ----QMLRDYIDVTN----------KGTYDFLYLRIDFVNKCNVGYAFI 645
Query: 61 NFTTSVAAVRFAKAFNKSRWEAQWLEFLTSACGD------QGMDALKIHFQEKCFNCHTD 114
NF + + F KA R QW F + D QG D L F+ C
Sbjct: 646 NFIEPQSIITFGKA----RVGTQWNVFHSEKICDISYANIQGKDRLIEKFRNSCVMDENP 701
Query: 115 SYLPVIL 121
+Y P I
Sbjct: 702 AYRPKIF 708
>sp|Q9SJG8|AML2_ARATH Protein MEI2-like 2 OS=Arabidopsis thaliana GN=ML2 PE=2 SV=2
Length = 843
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 14/81 (17%)
Query: 1 MIKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFV 60
+IKNIPN++ L+ +D + + +YDFL LP DF + N+G+AF+
Sbjct: 683 IIKNIPNKYTYKMLVAEID--------------EKHKGDYDFLCLPTDFKNKCNMGHAFI 728
Query: 61 NFTTSVAAVRFAKAFNKSRWE 81
N + + V F + FN WE
Sbjct: 729 NMVSPLHIVPFQQTFNGKIWE 749
>sp|A1ZA47|ZASP_DROME PDZ and LIM domain protein Zasp OS=Drosophila melanogaster GN=Zasp52
PE=1 SV=2
Length = 2194
Score = 32.7 bits (73), Expect = 0.75, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 9/40 (22%)
Query: 81 EAQWLEFLTSAC---------GDQGMDALKIHFQEKCFNC 111
EA W E T+ C GD+ ++AL ++ +CFNC
Sbjct: 2129 EADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQCFNC 2168
>sp|Q7TP47|HNRPQ_RAT Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus
GN=Syncrip PE=2 SV=1
Length = 533
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 18/34 (52%)
Query: 43 LYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFN 76
L L MD G N GYAFV F T AA K +N
Sbjct: 101 LRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYN 134
>sp|Q7TMK9|HNRPQ_MOUSE Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus
GN=Syncrip PE=1 SV=2
Length = 623
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 18/34 (52%)
Query: 43 LYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFN 76
L L MD G N GYAFV F T AA K +N
Sbjct: 191 LRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYN 224
>sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens
GN=SYNCRIP PE=1 SV=2
Length = 623
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 18/34 (52%)
Query: 43 LYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFN 76
L L MD G N GYAFV F T AA K +N
Sbjct: 191 LRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYN 224
>sp|P24043|LAMA2_HUMAN Laminin subunit alpha-2 OS=Homo sapiens GN=LAMA2 PE=1 SV=4
Length = 3122
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 108 CFNCHTDSY--LPVILAPPRDGWMRTRPTIVGRSCDGMNH 145
C C D Y LPV P G+ RP GR CDG H
Sbjct: 1524 CQECECDPYGSLPVP-CDPVTGFCTCRPGATGRKCDGCKH 1562
>sp|A6S8E7|TRMB_BOTFB tRNA (guanine-N(7)-)-methyltransferase OS=Botryotinia fuckeliana
(strain B05.10) GN=trm8 PE=3 SV=1
Length = 282
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 2 IKNIPNRFKRHDLLQIL----DNHCWAENMKAKLHSDPCRSEYDFLYLP 46
+K +PN FK+H L +I D H A KA++ S +EY ++ P
Sbjct: 160 MKFMPNFFKKHQLSKIFLCFPDPHFKARKHKARIVSTTLAAEYAYVVRP 208
>sp|Q66J99|RBM18_XENLA Probable RNA-binding protein 18 OS=Xenopus laevis GN=rbm18 PE=2
SV=1
Length = 190
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 17/97 (17%)
Query: 39 EYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWEAQWLEFLTSACGDQGMD 98
++DFL+ G GY FVNF T A R N ++ L +
Sbjct: 53 QFDFLFHKSGPLEGQPRGYCFVNFETKAEAERAIHCLNGKMALSKKLVVRWA-------- 104
Query: 99 ALKIHFQEKCF-NCHTDSYLPVILAPPRDGWMRTRPT 134
H Q K + NC + LP+ L P T PT
Sbjct: 105 ----HAQIKRYDNCKNEKVLPISLEPSSS----TEPT 133
>sp|Q9V9I4|OR42B_DROME Putative odorant receptor 42b OS=Drosophila melanogaster GN=Or42b
PE=3 SV=2
Length = 399
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 10 KRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAV 69
K ++L LD C A + K+H RS + FL +C GYA + +SV +
Sbjct: 109 KAKNILDQLDLRCTAMEEREKIHLVVARSNHAFLIFTFVYC-----GYAGSTYLSSVLSG 163
Query: 70 R 70
R
Sbjct: 164 R 164
>sp|Q6C1H8|EIF3B_YARLI Eukaryotic translation initiation factor 3 subunit B OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PRT1 PE=3 SV=1
Length = 717
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/56 (21%), Positives = 27/56 (48%)
Query: 26 NMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81
N+ K + + D +++P D G + G+ F+ + T A K+F+ +++
Sbjct: 48 NVMKKFFGAVGKIKEDGIFIPFDEATGKSTGFVFIEYETGEMAAAAVKSFHNKQFD 103
>sp|Q3V0B4|CC108_MOUSE Coiled-coil domain-containing protein 108 OS=Mus musculus
GN=Ccdc108 PE=1 SV=1
Length = 1847
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 102 IHFQEKCF-----NCHTDSYLPVILAPPRDGWMRT 131
IH Q+ F CH+DS P IL P W RT
Sbjct: 470 IHHQDPLFLDLIGTCHSDSIKPAILTPQHLTWYRT 504
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.138 0.473
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,369,620
Number of Sequences: 539616
Number of extensions: 2124812
Number of successful extensions: 4662
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4620
Number of HSP's gapped (non-prelim): 28
length of query: 146
length of database: 191,569,459
effective HSP length: 106
effective length of query: 40
effective length of database: 134,370,163
effective search space: 5374806520
effective search space used: 5374806520
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)