Query 040456
Match_columns 146
No_of_seqs 121 out of 241
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 08:39:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040456.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040456hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04059 RRM_2: RNA recognitio 100.0 5E-49 1.1E-53 283.6 9.7 91 1-105 5-97 (97)
2 KOG4660 Protein Mei2, essentia 100.0 2.7E-44 5.8E-49 317.6 9.9 137 1-137 365-515 (549)
3 KOG0145 RNA-binding protein EL 99.3 7.5E-12 1.6E-16 104.7 6.4 76 1-94 45-120 (360)
4 PLN03134 glycine-rich RNA-bind 99.1 4.7E-10 1E-14 85.3 8.2 75 2-94 39-113 (144)
5 KOG0122 Translation initiation 99.1 3.2E-10 7E-15 93.7 7.5 76 2-95 194-269 (270)
6 smart00360 RRM RNA recognition 99.0 3.4E-09 7.3E-14 66.2 7.8 70 2-89 1-70 (71)
7 PF00076 RRM_1: RNA recognitio 99.0 2.9E-09 6.2E-14 68.4 7.6 65 1-82 2-66 (70)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.0 1.6E-09 3.5E-14 90.2 7.5 77 1-95 7-83 (352)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.0 2.3E-09 4.9E-14 89.3 8.4 74 2-93 274-347 (352)
10 TIGR01659 sex-lethal sex-letha 98.9 8E-09 1.7E-13 88.7 8.0 76 2-95 112-187 (346)
11 PF14259 RRM_6: RNA recognitio 98.8 8.8E-09 1.9E-13 67.3 5.4 65 1-82 2-66 (70)
12 smart00362 RRM_2 RNA recogniti 98.8 3.9E-08 8.5E-13 61.6 7.1 64 1-82 3-66 (72)
13 TIGR01628 PABP-1234 polyadenyl 98.8 2.6E-08 5.7E-13 88.8 8.2 74 2-93 5-78 (562)
14 cd00590 RRM RRM (RNA recogniti 98.7 1.1E-07 2.4E-12 59.8 7.9 72 1-91 3-74 (74)
15 TIGR01622 SF-CC1 splicing fact 98.7 6E-08 1.3E-12 83.8 8.3 74 2-93 191-264 (457)
16 TIGR01659 sex-lethal sex-letha 98.7 8.4E-08 1.8E-12 82.4 8.9 82 2-99 198-279 (346)
17 TIGR01642 U2AF_lg U2 snRNP aux 98.7 1.1E-07 2.3E-12 83.2 8.6 76 2-95 300-375 (509)
18 COG0724 RNA-binding proteins ( 98.6 1.6E-07 3.4E-12 71.5 7.7 74 2-93 120-193 (306)
19 TIGR01628 PABP-1234 polyadenyl 98.6 2.2E-07 4.7E-12 82.9 8.3 74 2-94 290-363 (562)
20 smart00361 RRM_1 RNA recogniti 98.6 3.6E-07 7.7E-12 60.8 7.2 60 11-82 2-64 (70)
21 TIGR01645 half-pint poly-U bin 98.5 6.3E-07 1.4E-11 82.3 8.3 74 2-93 209-282 (612)
22 TIGR01645 half-pint poly-U bin 98.4 7.9E-07 1.7E-11 81.7 7.2 73 2-92 112-184 (612)
23 TIGR01648 hnRNP-R-Q heterogene 98.4 8.6E-07 1.9E-11 81.0 7.0 63 2-81 63-125 (578)
24 TIGR01622 SF-CC1 splicing fact 98.3 2.6E-06 5.7E-11 73.7 8.0 72 2-92 94-165 (457)
25 PLN03120 nucleic acid binding 98.2 7E-06 1.5E-10 68.5 7.8 70 2-93 9-78 (260)
26 KOG0117 Heterogeneous nuclear 98.1 7.1E-06 1.5E-10 72.9 7.5 75 2-92 88-163 (506)
27 KOG0117 Heterogeneous nuclear 98.1 5.4E-06 1.2E-10 73.6 6.4 73 2-100 264-336 (506)
28 TIGR01648 hnRNP-R-Q heterogene 98.1 7.8E-06 1.7E-10 74.8 7.4 80 2-95 143-222 (578)
29 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.1 1.1E-05 2.3E-10 71.5 7.7 72 1-95 279-351 (481)
30 PF03467 Smg4_UPF3: Smg-4/UPF3 98.1 2.5E-06 5.3E-11 67.1 3.0 83 2-98 12-101 (176)
31 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.0 4.6E-05 9.9E-10 67.5 9.1 78 2-95 399-480 (481)
32 KOG0108 mRNA cleavage and poly 97.9 2.8E-05 6E-10 69.1 7.2 75 2-94 23-97 (435)
33 KOG4207 Predicted splicing fac 97.9 2E-05 4.3E-10 64.6 5.5 77 2-96 18-94 (256)
34 KOG0125 Ataxin 2-binding prote 97.9 2.3E-05 5E-10 67.5 5.7 72 2-93 101-172 (376)
35 KOG0144 RNA-binding protein CU 97.8 5E-05 1.1E-09 67.5 7.1 75 3-93 40-115 (510)
36 KOG0147 Transcriptional coacti 97.8 2.9E-05 6.3E-10 70.2 5.6 78 3-96 284-362 (549)
37 KOG0123 Polyadenylate-binding 97.8 4.9E-05 1.1E-09 66.1 6.9 67 5-92 6-72 (369)
38 PF13893 RRM_5: RNA recognitio 97.7 0.00015 3.3E-09 45.6 6.0 36 55-92 21-56 (56)
39 PLN03213 repressor of silencin 97.5 0.00046 9.9E-09 62.7 7.9 77 2-100 15-93 (759)
40 KOG4208 Nucleolar RNA-binding 97.4 0.00042 9E-09 56.4 6.3 74 2-92 54-127 (214)
41 PLN03121 nucleic acid binding 97.3 0.001 2.2E-08 55.2 7.9 69 2-92 10-78 (243)
42 TIGR01642 U2AF_lg U2 snRNP aux 97.3 0.001 2.3E-08 58.2 8.2 55 37-93 443-500 (509)
43 KOG0127 Nucleolar protein fibr 97.3 0.00064 1.4E-08 62.1 6.4 74 1-93 121-194 (678)
44 KOG0145 RNA-binding protein EL 97.3 0.0011 2.3E-08 56.3 7.2 72 3-92 284-355 (360)
45 KOG0113 U1 small nuclear ribon 97.2 0.0016 3.4E-08 55.8 7.9 73 4-94 108-180 (335)
46 KOG0148 Apoptosis-promoting RN 97.1 0.0012 2.6E-08 56.0 5.7 54 37-92 86-139 (321)
47 KOG0131 Splicing factor 3b, su 97.0 0.0009 1.9E-08 53.8 4.5 74 2-93 14-87 (203)
48 KOG4206 Spliceosomal protein s 96.9 0.002 4.3E-08 52.8 5.4 75 2-93 14-88 (221)
49 KOG0123 Polyadenylate-binding 96.7 0.0034 7.5E-08 54.6 5.6 70 2-90 172-241 (369)
50 KOG0149 Predicted RNA-binding 96.6 0.004 8.6E-08 51.6 5.4 57 4-76 19-75 (247)
51 KOG4212 RNA-binding protein hn 96.6 0.0058 1.2E-07 55.0 6.5 67 2-84 49-115 (608)
52 KOG4212 RNA-binding protein hn 96.6 0.0052 1.1E-07 55.3 6.0 69 1-92 540-608 (608)
53 KOG0127 Nucleolar protein fibr 96.4 0.0058 1.3E-07 56.0 5.3 73 2-92 10-82 (678)
54 PF07576 BRAP2: BRCA1-associat 96.3 0.031 6.6E-07 41.1 7.8 75 5-95 20-96 (110)
55 KOG0144 RNA-binding protein CU 96.3 0.0088 1.9E-07 53.5 5.8 77 3-96 130-207 (510)
56 KOG0120 Splicing factor U2AF, 96.3 0.0042 9.1E-08 56.3 3.7 82 2-101 294-375 (500)
57 KOG0148 Apoptosis-promoting RN 96.2 0.016 3.4E-07 49.3 6.8 71 3-97 170-240 (321)
58 KOG1295 Nonsense-mediated deca 96.1 0.0026 5.6E-08 55.7 1.7 66 2-82 12-79 (376)
59 KOG0110 RNA-binding protein (R 96.1 0.0053 1.2E-07 57.3 3.5 75 2-94 618-692 (725)
60 KOG0107 Alternative splicing f 96.0 0.012 2.6E-07 47.1 4.8 60 2-82 15-74 (195)
61 KOG0114 Predicted RNA-binding 96.0 0.041 9E-07 41.0 7.2 69 2-91 23-91 (124)
62 KOG0804 Cytoplasmic Zn-finger 95.9 0.023 5E-07 51.0 6.5 71 5-92 82-153 (493)
63 KOG0111 Cyclophilin-type pepti 95.8 0.0078 1.7E-07 50.1 2.9 57 36-94 33-89 (298)
64 KOG0146 RNA-binding protein ET 95.2 0.019 4E-07 49.0 3.4 69 3-89 291-359 (371)
65 KOG0109 RNA-binding protein LA 95.2 0.021 4.5E-07 49.0 3.6 90 2-117 7-96 (346)
66 KOG0132 RNA polymerase II C-te 95.2 0.066 1.4E-06 51.0 7.0 74 2-99 426-499 (894)
67 KOG0226 RNA-binding proteins [ 94.5 0.061 1.3E-06 45.4 4.5 41 42-82 219-259 (290)
68 KOG0105 Alternative splicing f 94.2 0.078 1.7E-06 43.2 4.4 72 2-95 11-83 (241)
69 KOG0130 RNA-binding protein RB 94.0 0.15 3.2E-06 39.7 5.4 77 4-98 79-155 (170)
70 KOG0131 Splicing factor 3b, su 93.8 0.19 4.1E-06 40.6 5.9 77 2-95 101-177 (203)
71 KOG4660 Protein Mei2, essentia 92.9 0.035 7.7E-07 50.7 0.5 22 1-23 392-413 (549)
72 KOG0533 RRM motif-containing p 92.8 0.41 8.8E-06 39.8 6.6 72 1-90 87-160 (243)
73 KOG2314 Translation initiation 92.3 0.34 7.3E-06 45.0 5.9 47 37-84 88-134 (698)
74 KOG0121 Nuclear cap-binding pr 91.7 0.68 1.5E-05 35.7 6.2 107 3-130 42-148 (153)
75 KOG0110 RNA-binding protein (R 91.2 0.73 1.6E-05 43.5 6.9 71 2-89 520-594 (725)
76 KOG0415 Predicted peptidyl pro 90.1 0.46 1E-05 42.1 4.4 58 9-82 251-308 (479)
77 KOG1457 RNA binding protein (c 88.9 2.2 4.7E-05 35.8 7.3 75 4-94 41-117 (284)
78 KOG0124 Polypyrimidine tract-b 88.8 0.62 1.4E-05 41.5 4.3 50 37-86 137-187 (544)
79 KOG0126 Predicted RNA-binding 88.4 0.047 1E-06 44.2 -2.7 73 2-90 40-113 (219)
80 KOG2416 Acinus (induces apopto 88.1 0.78 1.7E-05 42.9 4.6 71 2-93 449-520 (718)
81 KOG4205 RNA-binding protein mu 87.9 0.67 1.5E-05 39.8 3.8 71 4-94 104-175 (311)
82 KOG0146 RNA-binding protein ET 83.8 5.9 0.00013 34.2 7.4 58 37-95 43-101 (371)
83 KOG4209 Splicing factor RNPS1, 83.5 1.7 3.7E-05 35.7 4.0 50 43-95 131-180 (231)
84 PF08777 RRM_3: RNA binding mo 81.3 2.3 5.1E-05 30.6 3.6 73 3-99 7-82 (105)
85 KOG0124 Polypyrimidine tract-b 81.0 2.9 6.3E-05 37.4 4.7 57 5-77 218-274 (544)
86 KOG0106 Alternative splicing f 80.0 2.4 5.2E-05 34.8 3.7 67 2-94 6-72 (216)
87 KOG3152 TBP-binding protein, a 79.6 2.5 5.5E-05 35.8 3.8 65 2-82 79-155 (278)
88 KOG0147 Transcriptional coacti 78.8 8.5 0.00018 35.6 7.1 54 37-97 477-530 (549)
89 KOG1365 RNA-binding protein Fu 78.2 3.2 7E-05 37.2 4.2 79 2-98 285-365 (508)
90 KOG0153 Predicted RNA-binding 76.6 7.7 0.00017 34.2 5.9 69 2-94 233-302 (377)
91 KOG0116 RasGAP SH3 binding pro 74.7 4.9 0.00011 36.0 4.4 56 2-75 293-350 (419)
92 KOG4205 RNA-binding protein mu 72.9 3.8 8.2E-05 35.2 3.2 57 2-74 11-67 (311)
93 KOG4211 Splicing factor hnRNP- 70.3 9.7 0.00021 34.9 5.2 57 2-74 108-164 (510)
94 PF04847 Calcipressin: Calcipr 63.9 17 0.00036 28.9 4.9 51 38-97 21-73 (184)
95 KOG1190 Polypyrimidine tract-b 62.6 16 0.00034 33.1 5.0 73 2-95 419-491 (492)
96 KOG0151 Predicted splicing reg 59.0 13 0.00028 35.8 4.0 77 2-93 179-255 (877)
97 KOG4206 Spliceosomal protein s 56.6 46 0.00099 27.5 6.4 69 2-93 151-220 (221)
98 KOG0120 Splicing factor U2AF, 49.7 62 0.0014 29.8 6.7 53 37-91 433-488 (500)
99 KOG0106 Alternative splicing f 48.4 15 0.00033 30.1 2.4 62 2-89 104-165 (216)
100 KOG0109 RNA-binding protein LA 47.9 22 0.00048 30.9 3.4 56 3-82 84-139 (346)
101 COG5105 MIH1 Mitotic inducer, 43.3 87 0.0019 27.9 6.3 92 7-123 242-343 (427)
102 KOG4211 Splicing factor hnRNP- 42.4 46 0.001 30.6 4.7 54 2-74 15-68 (510)
103 PF12949 HeH: HeH/LEM domain; 38.3 20 0.00042 21.3 1.2 18 6-23 1-18 (35)
104 PF14026 DUF4242: Protein of u 34.8 1.4E+02 0.0031 20.1 7.1 67 2-81 5-72 (77)
105 KOG4661 Hsp27-ERE-TATA-binding 34.0 92 0.002 29.8 5.3 65 11-93 419-483 (940)
106 KOG2193 IGF-II mRNA-binding pr 32.6 35 0.00077 31.2 2.4 69 2-93 6-74 (584)
107 PF11608 Limkain-b1: Limkain b 32.1 54 0.0012 23.5 2.8 71 2-95 7-77 (90)
108 KOG4019 Calcineurin-mediated s 32.0 1.6E+02 0.0034 23.9 5.7 46 54-101 50-96 (193)
109 KOG4454 RNA binding protein (R 29.7 84 0.0018 26.4 3.9 38 43-82 39-76 (267)
110 KOG1457 RNA binding protein (c 28.3 1.6E+02 0.0034 25.0 5.3 61 2-82 215-275 (284)
111 KOG1456 Heterogeneous nuclear 27.0 2.8E+02 0.0061 25.2 6.9 75 4-95 413-491 (494)
112 PF05573 NosL: NosL; InterPro 25.5 70 0.0015 24.1 2.6 29 51-79 110-138 (149)
113 COG4154 FucU Fucose dissimilat 25.3 57 0.0012 25.2 2.1 20 1-21 1-20 (144)
114 PF15023 DUF4523: Protein of u 24.7 1.3E+02 0.0027 23.8 3.9 34 46-79 116-149 (166)
115 KOG2202 U2 snRNP splicing fact 22.4 73 0.0016 26.9 2.4 36 54-89 109-144 (260)
116 KOG1548 Transcription elongati 21.1 2.9E+02 0.0064 24.6 5.9 42 37-82 300-341 (382)
117 KOG0128 RNA-binding protein SA 21.0 31 0.00067 33.7 -0.1 63 38-102 692-754 (881)
118 PF00568 WH1: WH1 domain; Int 20.1 58 0.0013 23.2 1.2 18 60-77 92-109 (111)
No 1
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=100.00 E-value=5e-49 Score=283.58 Aligned_cols=91 Identities=52% Similarity=0.844 Sum_probs=88.9
Q ss_pred CCcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcc
Q 040456 1 MIKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRW 80 (146)
Q Consensus 1 MirNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w 80 (146)
|||||||+|||++|+++||++| .|+||||||||||+++||+|||||||+++++|.+|++.|+|++|
T Consensus 5 MirNIPn~~t~~~L~~~l~~~~--------------~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w 70 (97)
T PF04059_consen 5 MIRNIPNKYTQEMLIQILDEHF--------------KGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKW 70 (97)
T ss_pred EEecCCCCCCHHHHHHHHHHhc--------------cCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCcc
Confidence 9999999999999999999986 68999999999999999999999999999999999999999999
Q ss_pred cCCC--cEEEEEeccCcChHHHHHHhc
Q 040456 81 EAQW--LEFLTSACGDQGMDALKIHFQ 105 (146)
Q Consensus 81 ~~~~--Kic~V~yAriQG~~al~~hf~ 105 (146)
+.+. |+|+|+|||+||++||++|||
T Consensus 71 ~~~~s~Kvc~i~yAriQG~~alv~~f~ 97 (97)
T PF04059_consen 71 PNFNSKKVCEISYARIQGKDALVEHFR 97 (97)
T ss_pred ccCCCCcEEEEehhHhhCHHHHHHhhC
Confidence 9887 999999999999999999996
No 2
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.7e-44 Score=317.64 Aligned_cols=137 Identities=41% Similarity=0.720 Sum_probs=125.1
Q ss_pred CCcCCCCccCHHHHHHHHHhhchhhhhhcccCCC------------CCCCccceEEEceeccCCcceeEEEEeccChHHH
Q 040456 1 MIKNIPNRFKRHDLLQILDNHCWAENMKAKLHSD------------PCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAA 68 (146)
Q Consensus 1 MirNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~------------~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a 68 (146)
||+||||+++|.+|.+|+|.+|.+.|.+++.... .-.|.|||+||||||+++||+|||||||++|+++
T Consensus 365 ~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai 444 (549)
T KOG4660|consen 365 MIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAI 444 (549)
T ss_pred hhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHH
Confidence 7889999999999999999988888876654432 3479999999999999999999999999999999
Q ss_pred HHHHHHhcCCcccCCC--cEEEEEeccCcChHHHHHHhccccccCCCCCcCceEEeCCCCCCCCCCceecc
Q 040456 69 VRFAKAFNKSRWEAQW--LEFLTSACGDQGMDALKIHFQEKCFNCHTDSYLPVILAPPRDGWMRTRPTIVG 137 (146)
Q Consensus 69 ~~f~~~f~g~~w~~~~--Kic~V~yAriQG~~al~~hf~ns~~~~~~~~y~P~~f~p~~dg~~~~~~~~~g 137 (146)
++|+++|||++|+.|. |+|+|+||||||+++|++||+||++||+.+.|+|+||+|++||-....|..+.
T Consensus 445 ~~F~kAFnGk~W~~FnS~Kia~itYArIQGk~~Li~hFqnS~lm~E~e~y~Pvvf~pp~dg~~~~~p~~~~ 515 (549)
T KOG4660|consen 445 IRFYKAFNGKKWEKFNSEKIASITYARIQGKEALIEHFQNSSLMCEDEAYRPVVFSPPEDGREEPEPVKLN 515 (549)
T ss_pred HHHHHHHcCCchhhhcceeeeeeehhhhhchHHHHHHhhcccccccchhcCceEecCcccccccCcccccc
Confidence 9999999999999999 99999999999999999999999999999999999999999998777776554
No 3
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=7.5e-12 Score=104.74 Aligned_cols=76 Identities=21% Similarity=0.339 Sum_probs=71.4
Q ss_pred CCcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcc
Q 040456 1 MIKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRW 80 (146)
Q Consensus 1 MirNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w 80 (146)
++.++|..+||++|+.++.+ -|+++.+-|..|-.++.++||+|||+.+|++|++.+..+||.++
T Consensus 45 IvNYLPQ~MTqdE~rSLF~S----------------iGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrL 108 (360)
T KOG0145|consen 45 IVNYLPQNMTQDELRSLFGS----------------IGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRL 108 (360)
T ss_pred eeeecccccCHHHHHHHhhc----------------ccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceee
Confidence 36789999999999999987 47899999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEEeccC
Q 040456 81 EAQWLEFLTSACGD 94 (146)
Q Consensus 81 ~~~~Kic~V~yAri 94 (146)
.. |+..|+|||.
T Consensus 109 Q~--KTIKVSyARP 120 (360)
T KOG0145|consen 109 QN--KTIKVSYARP 120 (360)
T ss_pred cc--ceEEEEeccC
Confidence 88 9999999985
No 4
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.09 E-value=4.7e-10 Score=85.30 Aligned_cols=75 Identities=16% Similarity=0.162 Sum_probs=69.2
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.. .|...-+.++.|..++.++|||||.|.++++|..+++.++|....
T Consensus 39 VgnL~~~~te~~L~~~F~~----------------~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~ 102 (144)
T PLN03134 39 IGGLSWGTDDASLRDAFAH----------------FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELN 102 (144)
T ss_pred EeCCCCCCCHHHHHHHHhc----------------CCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 7899999999999999987 468888999999999999999999999999999999999999877
Q ss_pred CCCcEEEEEeccC
Q 040456 82 AQWLEFLTSACGD 94 (146)
Q Consensus 82 ~~~Kic~V~yAri 94 (146)
. +.+.|.||+-
T Consensus 103 G--r~l~V~~a~~ 113 (144)
T PLN03134 103 G--RHIRVNPAND 113 (144)
T ss_pred C--EEEEEEeCCc
Confidence 6 8899999863
No 5
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=3.2e-10 Score=93.67 Aligned_cols=76 Identities=21% Similarity=0.319 Sum_probs=71.5
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|-|+|..+++.+|.+++-. +|.+--+||-+|-.|+..+|+|||+|.+.++|.+++..++|+.|.
T Consensus 194 vtNLsed~~E~dL~eLf~~----------------fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd 257 (270)
T KOG0122|consen 194 VTNLSEDMREDDLEELFRP----------------FGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYD 257 (270)
T ss_pred EecCccccChhHHHHHhhc----------------cCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccc
Confidence 4699999999999888865 689999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeccCc
Q 040456 82 AQWLEFLTSACGDQ 95 (146)
Q Consensus 82 ~~~Kic~V~yAriQ 95 (146)
+ -|+.|.||+.|
T Consensus 258 ~--LILrvEwskP~ 269 (270)
T KOG0122|consen 258 N--LILRVEWSKPS 269 (270)
T ss_pred e--EEEEEEecCCC
Confidence 8 99999999976
No 6
>smart00360 RRM RNA recognition motif.
Probab=98.99 E-value=3.4e-09 Score=66.23 Aligned_cols=70 Identities=20% Similarity=0.331 Sum_probs=61.2
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||..++.++|.+++.. .|....+.++.+..++.+.|||||.|.+++.|..+.+.++|..+.
T Consensus 1 i~~l~~~~~~~~l~~~f~~----------------~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~ 64 (71)
T smart00360 1 VGNLPPDVTEEELRELFSK----------------FGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELD 64 (71)
T ss_pred CCCCCcccCHHHHHHHHHh----------------hCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeC
Confidence 6899999999999999976 367788889988888999999999999999999999999988876
Q ss_pred CCCcEEEE
Q 040456 82 AQWLEFLT 89 (146)
Q Consensus 82 ~~~Kic~V 89 (146)
. +.+.|
T Consensus 65 ~--~~~~v 70 (71)
T smart00360 65 G--RPLKV 70 (71)
T ss_pred C--cEEEe
Confidence 5 54444
No 7
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.99 E-value=2.9e-09 Score=68.44 Aligned_cols=65 Identities=18% Similarity=0.365 Sum_probs=60.1
Q ss_pred CCcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcc
Q 040456 1 MIKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRW 80 (146)
Q Consensus 1 MirNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w 80 (146)
.|+|||..+|+++|.+++.+ .|....+.++.+ .++...|||||-|.++++|.++.+.++|+.|
T Consensus 2 ~v~nlp~~~t~~~l~~~f~~----------------~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~ 64 (70)
T PF00076_consen 2 YVGNLPPDVTEEELRDFFSQ----------------FGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKI 64 (70)
T ss_dssp EEESETTTSSHHHHHHHHHT----------------TSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred EEcCCCCcCCHHHHHHHHHH----------------hhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEE
Confidence 37899999999999999987 478888899998 8999999999999999999999999999988
Q ss_pred cC
Q 040456 81 EA 82 (146)
Q Consensus 81 ~~ 82 (146)
..
T Consensus 65 ~~ 66 (70)
T PF00076_consen 65 NG 66 (70)
T ss_dssp TT
T ss_pred Cc
Confidence 76
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=98.97 E-value=1.6e-09 Score=90.18 Aligned_cols=77 Identities=19% Similarity=0.337 Sum_probs=70.2
Q ss_pred CCcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcc
Q 040456 1 MIKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRW 80 (146)
Q Consensus 1 MirNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w 80 (146)
+|+|||.++|+++|.+++.+ .|...-+.|..|..++.++|||||.|.++++|.+.++.++|..+
T Consensus 7 ~V~nLp~~~~e~~l~~~F~~----------------~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l 70 (352)
T TIGR01661 7 IVNYLPQTMTQEEIRSLFTS----------------IGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRL 70 (352)
T ss_pred EEeCCCCCCCHHHHHHHHHc----------------cCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEE
Confidence 48999999999999999987 47888899999999999999999999999999999999999988
Q ss_pred cCCCcEEEEEeccCc
Q 040456 81 EAQWLEFLTSACGDQ 95 (146)
Q Consensus 81 ~~~~Kic~V~yAriQ 95 (146)
.. +.+.|.||+..
T Consensus 71 ~g--~~i~v~~a~~~ 83 (352)
T TIGR01661 71 QN--KTIKVSYARPS 83 (352)
T ss_pred CC--eeEEEEeeccc
Confidence 76 88999998643
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=98.97 E-value=2.3e-09 Score=89.28 Aligned_cols=74 Identities=16% Similarity=0.103 Sum_probs=69.5
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.. .|....+-++.|..|+.++|||||.|.++++|...++.+||..+.
T Consensus 274 V~NL~~~~~e~~L~~~F~~----------------fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~ 337 (352)
T TIGR01661 274 VYNLSPDTDETVLWQLFGP----------------FGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLG 337 (352)
T ss_pred EeCCCCCCCHHHHHHHHHh----------------CCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEEC
Confidence 7999999999999999986 478888999999999999999999999999999999999999987
Q ss_pred CCCcEEEEEecc
Q 040456 82 AQWLEFLTSACG 93 (146)
Q Consensus 82 ~~~Kic~V~yAr 93 (146)
. +.+.|+|+.
T Consensus 338 g--r~i~V~~~~ 347 (352)
T TIGR01661 338 N--RVLQVSFKT 347 (352)
T ss_pred C--eEEEEEEcc
Confidence 7 999999985
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.86 E-value=8e-09 Score=88.71 Aligned_cols=76 Identities=18% Similarity=0.310 Sum_probs=69.2
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|.|||..+|+++|.++|.++ +.+.-+.++.|..++.++|||||.|.++++|.++++.++|....
T Consensus 112 VgnLp~~~te~~L~~lF~~~----------------G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~ 175 (346)
T TIGR01659 112 VNYLPQDMTDRELYALFRTI----------------GPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVR 175 (346)
T ss_pred EeCCCCCCCHHHHHHHHHhc----------------CCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccC
Confidence 67999999999999999873 67888899999999999999999999999999999999998877
Q ss_pred CCCcEEEEEeccCc
Q 040456 82 AQWLEFLTSACGDQ 95 (146)
Q Consensus 82 ~~~Kic~V~yAriQ 95 (146)
. +.+.|.||+..
T Consensus 176 g--r~i~V~~a~p~ 187 (346)
T TIGR01659 176 N--KRLKVSYARPG 187 (346)
T ss_pred C--ceeeeeccccc
Confidence 6 88999998653
No 11
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.82 E-value=8.8e-09 Score=67.27 Aligned_cols=65 Identities=23% Similarity=0.347 Sum_probs=55.7
Q ss_pred CCcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcc
Q 040456 1 MIKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRW 80 (146)
Q Consensus 1 MirNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w 80 (146)
+|+|||...|.++|++++... |....+.++.+.. +...|+|||.|.++++|.++.+..+|..|
T Consensus 2 ~i~nlp~~~~~~~l~~~f~~~----------------g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~ 64 (70)
T PF14259_consen 2 YISNLPPSTTEEDLRNFFSRF----------------GPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEI 64 (70)
T ss_dssp EEESSTTT--HHHHHHHCTTS----------------SBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhc----------------CCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEE
Confidence 489999999999999998763 5678888888866 89999999999999999999999998887
Q ss_pred cC
Q 040456 81 EA 82 (146)
Q Consensus 81 ~~ 82 (146)
..
T Consensus 65 ~g 66 (70)
T PF14259_consen 65 DG 66 (70)
T ss_dssp TT
T ss_pred CC
Confidence 65
No 12
>smart00362 RRM_2 RNA recognition motif.
Probab=98.77 E-value=3.9e-08 Score=61.62 Aligned_cols=64 Identities=23% Similarity=0.473 Sum_probs=54.4
Q ss_pred CCcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcc
Q 040456 1 MIKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRW 80 (146)
Q Consensus 1 MirNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w 80 (146)
.|+|||..+++++|.+++.++ |....+.+..+. +.+.|||||.|.++++|.++.+.++|..+
T Consensus 3 ~i~~l~~~~~~~~l~~~~~~~----------------g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~ 64 (72)
T smart00362 3 FVGNLPPDVTEEDLKELFSKF----------------GPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKL 64 (72)
T ss_pred EEcCCCCcCCHHHHHHHHHhc----------------CCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEE
Confidence 378999999999999999864 455556666555 78999999999999999999999999887
Q ss_pred cC
Q 040456 81 EA 82 (146)
Q Consensus 81 ~~ 82 (146)
..
T Consensus 65 ~~ 66 (72)
T smart00362 65 GG 66 (72)
T ss_pred CC
Confidence 65
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.76 E-value=2.6e-08 Score=88.75 Aligned_cols=74 Identities=16% Similarity=0.193 Sum_probs=67.5
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.++ |...-+-+..|-.++.++|||||+|.++++|.++.+.+++..+.
T Consensus 5 VgnLp~~vte~~L~~~F~~~----------------G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~ 68 (562)
T TIGR01628 5 VGDLDPDVTEAKLYDLFKPF----------------GPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLG 68 (562)
T ss_pred EeCCCCCCCHHHHHHHHHhc----------------CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 68999999999999999874 67888999999999999999999999999999999999998776
Q ss_pred CCCcEEEEEecc
Q 040456 82 AQWLEFLTSACG 93 (146)
Q Consensus 82 ~~~Kic~V~yAr 93 (146)
. |.+.|.|+.
T Consensus 69 g--k~i~i~~s~ 78 (562)
T TIGR01628 69 G--KPIRIMWSQ 78 (562)
T ss_pred C--eeEEeeccc
Confidence 6 888998873
No 14
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.71 E-value=1.1e-07 Score=59.82 Aligned_cols=72 Identities=18% Similarity=0.282 Sum_probs=61.7
Q ss_pred CCcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcc
Q 040456 1 MIKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRW 80 (146)
Q Consensus 1 MirNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w 80 (146)
+|+|+|...+.++|.+++..+ |....++++.+..+ ...|+|||.|.++++|..+.+.+++..+
T Consensus 3 ~i~~l~~~~~~~~i~~~~~~~----------------g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~ 65 (74)
T cd00590 3 FVGNLPPDVTEEDLRELFSKF----------------GKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKEL 65 (74)
T ss_pred EEeCCCCccCHHHHHHHHHhc----------------CCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeE
Confidence 478999999999999999763 67788888877766 6799999999999999999999999986
Q ss_pred cCCCcEEEEEe
Q 040456 81 EAQWLEFLTSA 91 (146)
Q Consensus 81 ~~~~Kic~V~y 91 (146)
.. +.+.|.|
T Consensus 66 ~~--~~~~v~~ 74 (74)
T cd00590 66 GG--RPLRVEF 74 (74)
T ss_pred CC--eEEEEeC
Confidence 65 6776654
No 15
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.70 E-value=6e-08 Score=83.84 Aligned_cols=74 Identities=16% Similarity=0.213 Sum_probs=68.4
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||..+|+++|.+++.. .|....+.|+.|..++.+.|||||.|.++++|....+.++|..+.
T Consensus 191 v~nl~~~~te~~l~~~f~~----------------~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~ 254 (457)
T TIGR01622 191 VGNLHFNITEQELRQIFEP----------------FGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELA 254 (457)
T ss_pred EcCCCCCCCHHHHHHHHHh----------------cCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEEC
Confidence 7899999999999999976 478889999999999999999999999999999999999998887
Q ss_pred CCCcEEEEEecc
Q 040456 82 AQWLEFLTSACG 93 (146)
Q Consensus 82 ~~~Kic~V~yAr 93 (146)
. +.+.|.||.
T Consensus 255 g--~~i~v~~a~ 264 (457)
T TIGR01622 255 G--RPIKVGYAQ 264 (457)
T ss_pred C--EEEEEEEcc
Confidence 6 899999975
No 16
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.69 E-value=8.4e-08 Score=82.43 Aligned_cols=82 Identities=20% Similarity=0.196 Sum_probs=73.4
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|.|||...|+++|.+++.+ .+....+-++.|..++..+|||||-|.+.++|.+.++.+|+..++
T Consensus 198 V~nLp~~vtee~L~~~F~~----------------fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~ 261 (346)
T TIGR01659 198 VTNLPRTITDDQLDTIFGK----------------YGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPE 261 (346)
T ss_pred EeCCCCcccHHHHHHHHHh----------------cCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccC
Confidence 6899999999999999976 467788889999999999999999999999999999999999887
Q ss_pred CCCcEEEEEeccCcChHH
Q 040456 82 AQWLEFLTSACGDQGMDA 99 (146)
Q Consensus 82 ~~~Kic~V~yAriQG~~a 99 (146)
...+.+.|.+|.-+++..
T Consensus 262 g~~~~l~V~~a~~~~~~~ 279 (346)
T TIGR01659 262 GGSQPLTVRLAEEHGKAK 279 (346)
T ss_pred CCceeEEEEECCcccccc
Confidence 655789999999887653
No 17
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.65 E-value=1.1e-07 Score=83.20 Aligned_cols=76 Identities=17% Similarity=0.247 Sum_probs=68.3
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|.|||..+|.++|.++|..+ |.+.-+.+..|..++.+.|||||.|.++++|...++.++|..+.
T Consensus 300 v~nlp~~~~~~~l~~~f~~~----------------G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~ 363 (509)
T TIGR01642 300 IGNLPLYLGEDQIKELLESF----------------GDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTG 363 (509)
T ss_pred EeCCCCCCCHHHHHHHHHhc----------------CCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 68999999999999999874 67777888899999999999999999999999999999999987
Q ss_pred CCCcEEEEEeccCc
Q 040456 82 AQWLEFLTSACGDQ 95 (146)
Q Consensus 82 ~~~Kic~V~yAriQ 95 (146)
. +.+.|.+|..+
T Consensus 364 ~--~~l~v~~a~~~ 375 (509)
T TIGR01642 364 D--NKLHVQRACVG 375 (509)
T ss_pred C--eEEEEEECccC
Confidence 6 88899998643
No 18
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.62 E-value=1.6e-07 Score=71.45 Aligned_cols=74 Identities=20% Similarity=0.298 Sum_probs=69.1
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|.|||..+|+++|.+++.+ .|....+.++.|-.++...|||||.|.+++.|...++.++|..|.
T Consensus 120 v~nL~~~~~~~~l~~~F~~----------------~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~ 183 (306)
T COG0724 120 VGNLPYDVTEEDLRELFKK----------------FGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELE 183 (306)
T ss_pred EeCCCCCCCHHHHHHHHHh----------------cCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeEC
Confidence 7899999999999999987 467788999999999999999999999999999999999999998
Q ss_pred CCCcEEEEEecc
Q 040456 82 AQWLEFLTSACG 93 (146)
Q Consensus 82 ~~~Kic~V~yAr 93 (146)
. +.|.|.++.
T Consensus 184 ~--~~~~v~~~~ 193 (306)
T COG0724 184 G--RPLRVQKAQ 193 (306)
T ss_pred C--ceeEeeccc
Confidence 8 899999976
No 19
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.57 E-value=2.2e-07 Score=82.91 Aligned_cols=74 Identities=16% Similarity=0.267 Sum_probs=67.8
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++..+ |....+.+..| .++.+.|||||.|.++++|.+..+.+||..+.
T Consensus 290 V~nl~~~~~~~~L~~~F~~~----------------G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~ 352 (562)
T TIGR01628 290 VKNLDDTVTDEKLRELFSEC----------------GEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLG 352 (562)
T ss_pred EeCCCCccCHHHHHHHHHhc----------------CCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeC
Confidence 68999999999999999874 68888999999 78999999999999999999999999998877
Q ss_pred CCCcEEEEEeccC
Q 040456 82 AQWLEFLTSACGD 94 (146)
Q Consensus 82 ~~~Kic~V~yAri 94 (146)
. |.+.|.||.-
T Consensus 353 g--k~l~V~~a~~ 363 (562)
T TIGR01628 353 G--KPLYVALAQR 363 (562)
T ss_pred C--ceeEEEeccC
Confidence 6 9999999964
No 20
>smart00361 RRM_1 RNA recognition motif.
Probab=98.56 E-value=3.6e-07 Score=60.84 Aligned_cols=60 Identities=15% Similarity=0.157 Sum_probs=52.0
Q ss_pred HHHHHHHHHhhchhhhhhcccCCCCCCCccceEE-EceeccC--CcceeEEEEeccChHHHHHHHHHhcCCcccC
Q 040456 11 RHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLY-LPMDFCH--GANLGYAFVNFTTSVAAVRFAKAFNKSRWEA 82 (146)
Q Consensus 11 ~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlY-LPiDf~~--~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~ 82 (146)
+++|.+++.+.|.. .|.+--+. +++|..+ +...|||||.|.++++|.++.+.+||..+..
T Consensus 2 ~~~l~~~~~~~~~~------------fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~g 64 (70)
T smart00361 2 DEDFEREFSEEEEY------------FGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDG 64 (70)
T ss_pred chhHHHHHHHHHHh------------cCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 67899999877742 67888776 8888777 8899999999999999999999999998876
No 21
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.45 E-value=6.3e-07 Score=82.29 Aligned_cols=74 Identities=11% Similarity=0.159 Sum_probs=67.5
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||..++.++|.++|.. .|....+.|+.|..++.++|||||.|.+.++|.+....+||..|.
T Consensus 209 VgnLp~~vteedLk~lFs~----------------FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elg 272 (612)
T TIGR01645 209 VASVHPDLSETDIKSVFEA----------------FGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG 272 (612)
T ss_pred eecCCCCCCHHHHHHHHhh----------------cCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeC
Confidence 6899999999999999987 478889999999999999999999999999999999999999988
Q ss_pred CCCcEEEEEecc
Q 040456 82 AQWLEFLTSACG 93 (146)
Q Consensus 82 ~~~Kic~V~yAr 93 (146)
. +.+.|.+|.
T Consensus 273 G--r~LrV~kAi 282 (612)
T TIGR01645 273 G--QYLRVGKCV 282 (612)
T ss_pred C--eEEEEEecC
Confidence 7 777777764
No 22
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.38 E-value=7.9e-07 Score=81.68 Aligned_cols=73 Identities=15% Similarity=0.205 Sum_probs=65.3
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|.|||...|+++|.++|.. .|...-+.++.|..++.++|||||.|.++++|.+.++.+||..+.
T Consensus 112 VGnLp~~~tEe~Lr~lF~~----------------fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~ 175 (612)
T TIGR01645 112 VGSISFELREDTIRRAFDP----------------FGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLG 175 (612)
T ss_pred EcCCCCCCCHHHHHHHHHc----------------cCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEe
Confidence 6899999999999999987 467888999999999999999999999999999999999999887
Q ss_pred CCCcEEEEEec
Q 040456 82 AQWLEFLTSAC 92 (146)
Q Consensus 82 ~~~Kic~V~yA 92 (146)
. +.+.|.++
T Consensus 176 G--R~IkV~rp 184 (612)
T TIGR01645 176 G--RNIKVGRP 184 (612)
T ss_pred c--ceeeeccc
Confidence 7 66666543
No 23
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.37 E-value=8.6e-07 Score=80.98 Aligned_cols=63 Identities=29% Similarity=0.420 Sum_probs=56.4
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|.|||..+|+++|.++|.++ |..-=+-|++| .++.|+|||||.|.++++|.+.++.+||....
T Consensus 63 VgnLp~~~tEd~L~~~F~~~----------------G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~ 125 (578)
T TIGR01648 63 VGKIPRDLYEDELVPLFEKA----------------GPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIR 125 (578)
T ss_pred eCCCCCCCCHHHHHHHHHhh----------------CCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeec
Confidence 68999999999999999874 45555789999 78999999999999999999999999988764
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.30 E-value=2.6e-06 Score=73.67 Aligned_cols=72 Identities=10% Similarity=0.130 Sum_probs=62.9
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|.|||...|+++|.++|..+ |...-+.|+.|..++.+.|||||-|.+.++|.++.. ++|..+.
T Consensus 94 V~nlp~~~~~~~l~~~F~~~----------------G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~ 156 (457)
T TIGR01622 94 VLQLALKARERDLYEFFSKV----------------GKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLL 156 (457)
T ss_pred EeCCCCCCCHHHHHHHHHhc----------------CCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEEC
Confidence 68999999999999999874 688889999999999999999999999999999985 8888876
Q ss_pred CCCcEEEEEec
Q 040456 82 AQWLEFLTSAC 92 (146)
Q Consensus 82 ~~~Kic~V~yA 92 (146)
. +...|.++
T Consensus 157 g--~~i~v~~~ 165 (457)
T TIGR01622 157 G--RPIIVQSS 165 (457)
T ss_pred C--eeeEEeec
Confidence 6 55666554
No 25
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.18 E-value=7e-06 Score=68.54 Aligned_cols=70 Identities=9% Similarity=0.143 Sum_probs=61.9
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|.|||.+.|+++|.++|.. .|+..-+.|+.|-. +.|||||.|.++++|..... ++|..+.
T Consensus 9 VgNLs~~tTE~dLrefFS~----------------~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~ 68 (260)
T PLN03120 9 VSNVSLKATERDIKEFFSF----------------SGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIV 68 (260)
T ss_pred EeCCCCCCCHHHHHHHHHh----------------cCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeC
Confidence 6799999999999999975 47999999998864 46999999999999999995 9999887
Q ss_pred CCCcEEEEEecc
Q 040456 82 AQWLEFLTSACG 93 (146)
Q Consensus 82 ~~~Kic~V~yAr 93 (146)
. +.+.|++|+
T Consensus 69 g--r~V~Vt~a~ 78 (260)
T PLN03120 69 D--QSVTITPAE 78 (260)
T ss_pred C--ceEEEEecc
Confidence 7 899999875
No 26
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.14 E-value=7.1e-06 Score=72.90 Aligned_cols=75 Identities=28% Similarity=0.343 Sum_probs=61.0
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|--||.++.+++|+-++++. |+.==|-|=||.-++.|+|||||-|++.+.|...++.+|++...
T Consensus 88 vGkIPrD~~EdeLvplfEki----------------G~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir 151 (506)
T KOG0117|consen 88 VGKIPRDVFEDELVPLFEKI----------------GKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR 151 (506)
T ss_pred ecCCCccccchhhHHHHHhc----------------cceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcccc
Confidence 34699999999999999874 34333558899889999999999999999999999999999887
Q ss_pred CCC-cEEEEEec
Q 040456 82 AQW-LEFLTSAC 92 (146)
Q Consensus 82 ~~~-Kic~V~yA 92 (146)
.-+ --|.||-|
T Consensus 152 ~GK~igvc~Sva 163 (506)
T KOG0117|consen 152 PGKLLGVCVSVA 163 (506)
T ss_pred CCCEeEEEEeee
Confidence 554 33444545
No 27
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.13 E-value=5.4e-06 Score=73.61 Aligned_cols=73 Identities=18% Similarity=0.265 Sum_probs=66.3
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|||||...|++.|.+++++| |+.+-+--|-| ||||-|.+.++|.+..+..||+.++
T Consensus 264 VRNL~~~tTeE~lk~~F~~~----------------G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeld 319 (506)
T KOG0117|consen 264 VRNLMESTTEETLKKLFNEF----------------GKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELD 319 (506)
T ss_pred eeccchhhhHHHHHHHHHhc----------------cceEEeecccc--------eeEEeecchHHHHHHHHHhcCceec
Confidence 79999999999999999985 67777877766 9999999999999999999999999
Q ss_pred CCCcEEEEEeccCcChHHH
Q 040456 82 AQWLEFLTSACGDQGMDAL 100 (146)
Q Consensus 82 ~~~Kic~V~yAriQG~~al 100 (146)
. -.+||+.|+.|-++.-
T Consensus 320 G--~~iEvtLAKP~~k~k~ 336 (506)
T KOG0117|consen 320 G--SPIEVTLAKPVDKKKK 336 (506)
T ss_pred C--ceEEEEecCChhhhcc
Confidence 8 8999999999987653
No 28
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.11 E-value=7.8e-06 Score=74.79 Aligned_cols=80 Identities=18% Similarity=0.203 Sum_probs=62.8
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|+++|.+.+ .+.-+.+..+.+-.+.-|.|||||.|.++++|..+.+.+++.+..
T Consensus 143 VgNLP~~~TeeeL~eeFskv~--------------egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~ 208 (578)
T TIGR01648 143 VGGIPKNKKREEILEEFSKVT--------------EGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQ 208 (578)
T ss_pred eecCCcchhhHHHHHHhhccc--------------CCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceE
Confidence 689999999999999998754 345666666666666789999999999999999999888654432
Q ss_pred CCCcEEEEEeccCc
Q 040456 82 AQWLEFLTSACGDQ 95 (146)
Q Consensus 82 ~~~Kic~V~yAriQ 95 (146)
...+.+.|.||..+
T Consensus 209 l~Gr~I~VdwA~p~ 222 (578)
T TIGR01648 209 LWGHVIAVDWAEPE 222 (578)
T ss_pred ecCceEEEEeeccc
Confidence 22377888998654
No 29
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.09 E-value=1.1e-05 Score=71.54 Aligned_cols=72 Identities=8% Similarity=0.086 Sum_probs=62.4
Q ss_pred CCcCCCC-ccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCc
Q 040456 1 MIKNIPN-RFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSR 79 (146)
Q Consensus 1 MirNIPn-k~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~ 79 (146)
+|+|||. +.|.++|.+++..+ |...-+.++.| ..|||||.|.++++|..+.+.+||..
T Consensus 279 ~v~nL~~~~vt~~~L~~lF~~y----------------G~V~~vki~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~ 337 (481)
T TIGR01649 279 MVSGLHQEKVNCDRLFNLFCVY----------------GNVERVKFMKN-----KKETALIEMADPYQAQLALTHLNGVK 337 (481)
T ss_pred EEeCCCCCCCCHHHHHHHHHhc----------------CCeEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 4789997 79999999999874 67777777776 25999999999999999999999999
Q ss_pred ccCCCcEEEEEeccCc
Q 040456 80 WEAQWLEFLTSACGDQ 95 (146)
Q Consensus 80 w~~~~Kic~V~yAriQ 95 (146)
+.. +.+.|++|+-+
T Consensus 338 l~g--~~l~v~~s~~~ 351 (481)
T TIGR01649 338 LFG--KPLRVCPSKQQ 351 (481)
T ss_pred ECC--ceEEEEEcccc
Confidence 877 89999998655
No 30
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=98.08 E-value=2.5e-06 Score=67.14 Aligned_cols=83 Identities=11% Similarity=0.214 Sum_probs=55.5
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCc--cceEE--EceeccCCcceeEEEEeccChHHHHHHHHHhcC
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSE--YDFLY--LPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNK 77 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~--yDFlY--LPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g 77 (146)
||+||+.+|++.+.+.|+.. +... ++|++ .+-.--...-.+.|||||.+.+++..|.+.|+|
T Consensus 12 IR~LPP~LteeeF~~~i~~~--------------l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g 77 (176)
T PF03467_consen 12 IRRLPPNLTEEEFWEQISPW--------------LPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDG 77 (176)
T ss_dssp EEEE-TTS-HHHHCCCCSS----------------SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTT
T ss_pred EeCCCCCCCHHHHHHHhhhh--------------cccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCC
Confidence 89999999999999977642 1344 33443 222222445678999999999999999999999
Q ss_pred CcccCCC---cEEEEEeccCcChH
Q 040456 78 SRWEAQW---LEFLTSACGDQGMD 98 (146)
Q Consensus 78 ~~w~~~~---Kic~V~yAriQG~~ 98 (146)
+.|..-. -++.|.+|-.|-..
T Consensus 78 ~~F~D~kg~~~~~~VE~Apyqk~p 101 (176)
T PF03467_consen 78 HVFVDSKGNEYPAVVEFAPYQKVP 101 (176)
T ss_dssp EEEE-TTS-EEEEEEEE-SS----
T ss_pred cEEECCCCCCcceeEEEcchhccc
Confidence 9998766 79999999887654
No 31
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=97.96 E-value=4.6e-05 Score=67.53 Aligned_cols=78 Identities=13% Similarity=0.124 Sum_probs=58.5
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||..+|+++|++++.++ |........+.-......|+|||.|.+.++|.+....+||+...
T Consensus 399 v~NLp~~~tee~L~~lF~~~----------------G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~ 462 (481)
T TIGR01649 399 LSNIPLSVSEEDLKELFAEN----------------GVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLN 462 (481)
T ss_pred EecCCCCCCHHHHHHHHHhc----------------CCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccC
Confidence 68999999999999999875 33222222221122236899999999999999999999999987
Q ss_pred CCC----cEEEEEeccCc
Q 040456 82 AQW----LEFLTSACGDQ 95 (146)
Q Consensus 82 ~~~----Kic~V~yAriQ 95 (146)
.-. -.+.|+||+-+
T Consensus 463 ~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 463 EPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCCCCccceEEEEeccCC
Confidence 632 27889998753
No 32
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=97.93 E-value=2.8e-05 Score=69.09 Aligned_cols=75 Identities=21% Similarity=0.297 Sum_probs=65.8
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||-..+++.|.+++.+. |..=-+-+..|..|+...||||+.|++.+.+.+..+.+||....
T Consensus 23 vgnip~~~se~~l~~~~~~~----------------g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~ 86 (435)
T KOG0108|consen 23 VGNIPYEGSEEQLLSIFSGV----------------GPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFN 86 (435)
T ss_pred ecCCCCcccHHHHHHHHhcc----------------CccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccC
Confidence 68999999999999999763 44445567889999999999999999999999999999999877
Q ss_pred CCCcEEEEEeccC
Q 040456 82 AQWLEFLTSACGD 94 (146)
Q Consensus 82 ~~~Kic~V~yAri 94 (146)
. ..+.|.||.-
T Consensus 87 g--r~l~v~~~~~ 97 (435)
T KOG0108|consen 87 G--RKLRVNYASN 97 (435)
T ss_pred C--ceEEeecccc
Confidence 6 8889999853
No 33
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=97.91 E-value=2e-05 Score=64.56 Aligned_cols=77 Identities=19% Similarity=0.286 Sum_probs=68.4
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|=||-++-|.++|..+|+.. |..-=||+|-|-.|+...|||||-|-...+|+.+.++++|..++
T Consensus 18 VdNLTyRTspd~LrrvFekY----------------G~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ld 81 (256)
T KOG4207|consen 18 VDNLTYRTSPDDLRRVFEKY----------------GRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLD 81 (256)
T ss_pred ecceeccCCHHHHHHHHHHh----------------CcccceecccccccccccceeEEEeeecchHHHHHHhhcceeec
Confidence 35888999999999999875 56666999999999999999999999999999999999999988
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|..|+.--
T Consensus 82 g--RelrVq~arygr 94 (256)
T KOG4207|consen 82 G--RELRVQMARYGR 94 (256)
T ss_pred c--ceeeehhhhcCC
Confidence 8 888888887643
No 34
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=97.89 E-value=2.3e-05 Score=67.53 Aligned_cols=72 Identities=21% Similarity=0.315 Sum_probs=61.5
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
+-|||=+|.+-||..++..++. . +=+=|=|..+-++|++||-|.++++|.|.+.++||..-+
T Consensus 101 VSNIPFrFRdpDL~aMF~kfG~----------------V--ldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VE 162 (376)
T KOG0125|consen 101 VSNIPFRFRDPDLRAMFEKFGK----------------V--LDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVE 162 (376)
T ss_pred eecCCccccCccHHHHHHhhCc----------------e--eeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceee
Confidence 4699999999999999988642 1 224566889999999999999999999999999999888
Q ss_pred CCCcEEEEEecc
Q 040456 82 AQWLEFLTSACG 93 (146)
Q Consensus 82 ~~~Kic~V~yAr 93 (146)
. .+.||.-|.
T Consensus 163 G--RkIEVn~AT 172 (376)
T KOG0125|consen 163 G--RKIEVNNAT 172 (376)
T ss_pred c--eEEEEeccc
Confidence 7 778887763
No 35
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=97.84 E-value=5e-05 Score=67.49 Aligned_cols=75 Identities=17% Similarity=0.208 Sum_probs=66.0
Q ss_pred cCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCc-cc
Q 040456 3 KNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSR-WE 81 (146)
Q Consensus 3 rNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~-w~ 81 (146)
--||..+|+.+|+++++++ |..+=+-|+-|-.++.+.|||||-|.+.++|.+...++|+.+ ++
T Consensus 40 gqIprt~sE~dlr~lFe~y----------------g~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlp 103 (510)
T KOG0144|consen 40 GQIPRTASEKDLRELFEKY----------------GNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLP 103 (510)
T ss_pred ccCCccccHHHHHHHHHHh----------------CceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccC
Confidence 3599999999999999985 688889999999999999999999999999999999998754 55
Q ss_pred CCCcEEEEEecc
Q 040456 82 AQWLEFLTSACG 93 (146)
Q Consensus 82 ~~~Kic~V~yAr 93 (146)
...-...|.||-
T Consensus 104 G~~~pvqvk~Ad 115 (510)
T KOG0144|consen 104 GMHHPVQVKYAD 115 (510)
T ss_pred CCCcceeecccc
Confidence 555778888883
No 36
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.83 E-value=2.9e-05 Score=70.16 Aligned_cols=78 Identities=15% Similarity=0.168 Sum_probs=69.4
Q ss_pred cCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcccC
Q 040456 3 KNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWEA 82 (146)
Q Consensus 3 rNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~ 82 (146)
.||=-.+|.+||..+++. +|+++++=|++|-.|+.+.||+||-|.++++|..+...+||..+..
T Consensus 284 gnLHfNite~~lr~ifep----------------fg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAG 347 (549)
T KOG0147|consen 284 GNLHFNITEDMLRGIFEP----------------FGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAG 347 (549)
T ss_pred cccccCchHHHHhhhccC----------------cccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecC
Confidence 477778899999999976 6899999999999999999999999999999999999999977777
Q ss_pred CC-cEEEEEeccCcC
Q 040456 83 QW-LEFLTSACGDQG 96 (146)
Q Consensus 83 ~~-Kic~V~yAriQG 96 (146)
.. |+|.|++---|.
T Consensus 348 r~ikV~~v~~r~~~~ 362 (549)
T KOG0147|consen 348 RLIKVSVVTERVDTK 362 (549)
T ss_pred ceEEEEEeeeecccc
Confidence 66 999998854443
No 37
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.83 E-value=4.9e-05 Score=66.07 Aligned_cols=67 Identities=18% Similarity=0.158 Sum_probs=58.4
Q ss_pred CCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcccCCC
Q 040456 5 IPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWEAQW 84 (146)
Q Consensus 5 IPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~~~ 84 (146)
+..+.|..+|.+++.. .|..=.+-+=.|. | ++|||||||.++++|.+..+++|......
T Consensus 6 vg~~v~e~~l~~~f~~----------------~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~-- 64 (369)
T KOG0123|consen 6 VGPDVTEAMLFDKFSP----------------AGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKG-- 64 (369)
T ss_pred cCCcCChHHHHHHhcc----------------cCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCC--
Confidence 3467899999999976 4677777888888 7 99999999999999999999999988777
Q ss_pred cEEEEEec
Q 040456 85 LEFLTSAC 92 (146)
Q Consensus 85 Kic~V~yA 92 (146)
|.+.|.|.
T Consensus 65 ~~~rim~s 72 (369)
T KOG0123|consen 65 KPIRIMWS 72 (369)
T ss_pred cEEEeehh
Confidence 99999887
No 38
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=97.70 E-value=0.00015 Score=45.60 Aligned_cols=36 Identities=22% Similarity=0.365 Sum_probs=34.0
Q ss_pred eeEEEEeccChHHHHHHHHHhcCCcccCCCcEEEEEec
Q 040456 55 LGYAFVNFTTSVAAVRFAKAFNKSRWEAQWLEFLTSAC 92 (146)
Q Consensus 55 ~GYAFVNf~~~~~a~~f~~~f~g~~w~~~~Kic~V~yA 92 (146)
.|+|||-|.++++|....+.+||..|.. +.+.|.||
T Consensus 21 ~~~a~V~f~~~~~A~~a~~~l~~~~~~g--~~l~V~~a 56 (56)
T PF13893_consen 21 RGFAFVEFASVEDAQKAIEQLNGRQFNG--RPLKVSYA 56 (56)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSEETT--EEEEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECC--cEEEEEEC
Confidence 6999999999999999999999999977 89999987
No 39
>PLN03213 repressor of silencing 3; Provisional
Probab=97.48 E-value=0.00046 Score=62.73 Aligned_cols=77 Identities=17% Similarity=0.347 Sum_probs=64.0
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccCh--HHHHHHHHHhcCCc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTS--VAAVRFAKAFNKSR 79 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~--~~a~~f~~~f~g~~ 79 (146)
|-||+-..|+++|.+.|.+ .|..--+++| -.++ +|||||+|.++ ..+.+.+..+||..
T Consensus 15 VGNLSydVTEDDLravFSe----------------FGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAE 74 (759)
T PLN03213 15 VGGLGESVGRDDLLKIFSP----------------MGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCV 74 (759)
T ss_pred EeCCCCCCCHHHHHHHHHh----------------cCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCe
Confidence 5689999999999999987 4788889998 3345 99999999998 68999999999999
Q ss_pred ccCCCcEEEEEeccCcChHHH
Q 040456 80 WEAQWLEFLTSACGDQGMDAL 100 (146)
Q Consensus 80 w~~~~Kic~V~yAriQG~~al 100 (146)
|.. -.+.|.=|+.-=.+.|
T Consensus 75 WKG--R~LKVNKAKP~YLeRL 93 (759)
T PLN03213 75 WKG--GRLRLEKAKEHYLARL 93 (759)
T ss_pred ecC--ceeEEeeccHHHHHHH
Confidence 998 6777877865444443
No 40
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=97.42 E-value=0.00042 Score=56.36 Aligned_cols=74 Identities=20% Similarity=0.268 Sum_probs=61.3
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
++-||.-+.+..++..+.+. .|.---+-|-..-+||.+.|||||-|.+++.|.-....+||+.+-
T Consensus 54 ~~~~p~g~~e~~~~~~~~q~---------------~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~ 118 (214)
T KOG4208|consen 54 VDHIPHGFFETEILNYFRQF---------------GGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLM 118 (214)
T ss_pred ecccccchhHHHHhhhhhhc---------------CCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhh
Confidence 46688888888888888764 366666777778899999999999999999999999999999876
Q ss_pred CCCcEEEEEec
Q 040456 82 AQWLEFLTSAC 92 (146)
Q Consensus 82 ~~~Kic~V~yA 92 (146)
. +.+++.+=
T Consensus 119 e--~lL~c~vm 127 (214)
T KOG4208|consen 119 E--HLLECHVM 127 (214)
T ss_pred h--heeeeEEe
Confidence 5 66666554
No 41
>PLN03121 nucleic acid binding protein; Provisional
Probab=97.34 E-value=0.001 Score=55.18 Aligned_cols=69 Identities=9% Similarity=0.076 Sum_probs=56.4
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
+.||+.+.|+++|.++|.. .|+..-++|+.|-.+ .|+|||-|.+++++.... .++|..+.
T Consensus 10 V~NLS~~tTE~dLrefFS~----------------~G~I~~V~I~~D~et---~gfAfVtF~d~~aaetAl-lLnGa~l~ 69 (243)
T PLN03121 10 VTNLSPKATEKDVYDFFSH----------------CGAIEHVEIIRSGEY---ACTAYVTFKDAYALETAV-LLSGATIV 69 (243)
T ss_pred EecCCCCCCHHHHHHHHHh----------------cCCeEEEEEecCCCc---ceEEEEEECCHHHHHHHH-hcCCCeeC
Confidence 5799999999999999986 489999999999444 389999999999997776 78998876
Q ss_pred CCCcEEEEEec
Q 040456 82 AQWLEFLTSAC 92 (146)
Q Consensus 82 ~~~Kic~V~yA 92 (146)
. ....|+.+
T Consensus 70 d--~~I~It~~ 78 (243)
T PLN03121 70 D--QRVCITRW 78 (243)
T ss_pred C--ceEEEEeC
Confidence 6 44444433
No 42
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=97.32 E-value=0.001 Score=58.22 Aligned_cols=55 Identities=11% Similarity=0.192 Sum_probs=47.6
Q ss_pred CCccceEEEcee---ccCCcceeEEEEeccChHHHHHHHHHhcCCcccCCCcEEEEEecc
Q 040456 37 RSEYDFLYLPMD---FCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWEAQWLEFLTSACG 93 (146)
Q Consensus 37 ~~~yDFlYLPiD---f~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~~~Kic~V~yAr 93 (146)
.|...-+.+|-+ ..++.++|+|||-|.++++|..++..+||.++.. ++..|+|..
T Consensus 443 ~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~g--r~v~~~~~~ 500 (509)
T TIGR01642 443 YGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFND--RVVVAAFYG 500 (509)
T ss_pred cCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECC--eEEEEEEeC
Confidence 678888999865 4456789999999999999999999999999877 888888864
No 43
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=97.27 E-value=0.00064 Score=62.15 Aligned_cols=74 Identities=22% Similarity=0.303 Sum_probs=64.5
Q ss_pred CCcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcc
Q 040456 1 MIKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRW 80 (146)
Q Consensus 1 MirNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w 80 (146)
+|||+|=+-...+|..++.. .|.+==+.+|-.+..+.- |||||-|+...+|....+.|||.+.
T Consensus 121 IIRNLPf~~k~~dLk~vFs~----------------~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i 183 (678)
T KOG0127|consen 121 IIRNLPFKCKKPDLKNVFSN----------------FGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKI 183 (678)
T ss_pred EeecCCcccCcHHHHHHHhh----------------cceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCcee
Confidence 59999999999999999876 356666789988777655 9999999999999999999999998
Q ss_pred cCCCcEEEEEecc
Q 040456 81 EAQWLEFLTSACG 93 (146)
Q Consensus 81 ~~~~Kic~V~yAr 93 (146)
.. ....|.||-
T Consensus 184 ~g--R~VAVDWAV 194 (678)
T KOG0127|consen 184 DG--RPVAVDWAV 194 (678)
T ss_pred cC--ceeEEeeec
Confidence 87 788899983
No 44
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=97.26 E-value=0.0011 Score=56.30 Aligned_cols=72 Identities=18% Similarity=0.122 Sum_probs=63.3
Q ss_pred cCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcccC
Q 040456 3 KNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWEA 82 (146)
Q Consensus 3 rNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~ 82 (146)
=|+-..-++.-|-+++.. +|+..-+-+-.||.|..=+||+||.+++-+.|...+..+||+++..
T Consensus 284 YNLspd~de~~LWQlFgp----------------FGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~ 347 (360)
T KOG0145|consen 284 YNLSPDADESILWQLFGP----------------FGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD 347 (360)
T ss_pred EecCCCchHhHHHHHhCc----------------ccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccc
Confidence 366677778888888754 6788889999999988889999999999999999999999999888
Q ss_pred CCcEEEEEec
Q 040456 83 QWLEFLTSAC 92 (146)
Q Consensus 83 ~~Kic~V~yA 92 (146)
|+++|++-
T Consensus 348 --rvLQVsFK 355 (360)
T KOG0145|consen 348 --RVLQVSFK 355 (360)
T ss_pred --eEEEEEEe
Confidence 99999884
No 45
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=97.23 E-value=0.0016 Score=55.79 Aligned_cols=73 Identities=14% Similarity=0.159 Sum_probs=64.9
Q ss_pred CCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcccCC
Q 040456 4 NIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWEAQ 83 (146)
Q Consensus 4 NIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~~ 83 (146)
-|+-..++..|...+.. .|.+-=+-|.-|-.|+.++|||||-|.+..+...+++.-+|.+.+.
T Consensus 108 RLnydT~EskLrreF~~----------------YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idg- 170 (335)
T KOG0113|consen 108 RLNYDTSESKLRREFEK----------------YGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDG- 170 (335)
T ss_pred eccccccHHHHHHHHHh----------------cCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecC-
Confidence 35677889999999976 4788889999999999999999999999999999999999999988
Q ss_pred CcEEEEEeccC
Q 040456 84 WLEFLTSACGD 94 (146)
Q Consensus 84 ~Kic~V~yAri 94 (146)
+.|-|.|-+-
T Consensus 171 -rri~VDvERg 180 (335)
T KOG0113|consen 171 -RRILVDVERG 180 (335)
T ss_pred -cEEEEEeccc
Confidence 8888888653
No 46
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.0012 Score=55.97 Aligned_cols=54 Identities=20% Similarity=0.171 Sum_probs=45.1
Q ss_pred CCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcccCCCcEEEEEec
Q 040456 37 RSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWEAQWLEFLTSAC 92 (146)
Q Consensus 37 ~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~~~Kic~V~yA 92 (146)
+|+.-=.-+..|-.|.-++||+||.|.+.++|++.++.+||.++.. ....-.||
T Consensus 86 FGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~--R~IRTNWA 139 (321)
T KOG0148|consen 86 FGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGR--RTIRTNWA 139 (321)
T ss_pred ccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeecc--ceeecccc
Confidence 4566666788999999999999999999999999999999998765 44444554
No 47
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=97.04 E-value=0.0009 Score=53.79 Aligned_cols=74 Identities=18% Similarity=0.209 Sum_probs=62.2
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
+-||+.|.|++.|.+++-+. |..==++.|-|..+..-.||||+-|.+.++|.=.++.||..++=
T Consensus 14 vgnld~kvs~~~l~EL~iqa----------------gpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLY 77 (203)
T KOG0131|consen 14 VGNLDEKVSEELLYELFIQA----------------GPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLY 77 (203)
T ss_pred EecCCHHHHHHHHHHHHHhc----------------CceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhc
Confidence 45899999999999998763 45556899999999999999999999999999999999977765
Q ss_pred CCCcEEEEEecc
Q 040456 82 AQWLEFLTSACG 93 (146)
Q Consensus 82 ~~~Kic~V~yAr 93 (146)
. |...|.=|.
T Consensus 78 g--rpIrv~kas 87 (203)
T KOG0131|consen 78 G--RPIRVNKAS 87 (203)
T ss_pred C--ceeEEEecc
Confidence 4 666665554
No 48
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=96.90 E-value=0.002 Score=52.80 Aligned_cols=75 Identities=20% Similarity=0.164 Sum_probs=65.3
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|++.|...++|++-|-.. +++|+=+==.+-+++.--+|=|||-|.+.+.|-...++++|..+=
T Consensus 14 InnLnekI~~~elkrsL~~L---------------FsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFy 78 (221)
T KOG4206|consen 14 INNLNEKIKKDELKRSLYLL---------------FSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFY 78 (221)
T ss_pred ehhccccccHHHHHHHHHHH---------------HHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCccc
Confidence 79999999999999977653 567776656677899999999999999999999999999999865
Q ss_pred CCCcEEEEEecc
Q 040456 82 AQWLEFLTSACG 93 (146)
Q Consensus 82 ~~~Kic~V~yAr 93 (146)
. |...|.||+
T Consensus 79 g--K~mriqyA~ 88 (221)
T KOG4206|consen 79 G--KPMRIQYAK 88 (221)
T ss_pred C--chhheeccc
Confidence 5 999999995
No 49
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=96.67 E-value=0.0034 Score=54.64 Aligned_cols=70 Identities=17% Similarity=0.261 Sum_probs=60.9
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
++|.+...|+.+|++.++. .|+...+-++-|-..+ +.||+||||.++++|..+.+..+|...+
T Consensus 172 vk~~~~~~~~~~l~~~f~~----------------~g~i~s~~v~~~~~g~-~~~~gfv~f~~~e~a~~av~~l~~~~~~ 234 (369)
T KOG0123|consen 172 VKNLEEDSTDEELKDLFSA----------------YGSITSVAVMRDSIGK-SKGFGFVNFENPEDAKKAVETLNGKIFG 234 (369)
T ss_pred eeccccccchHHHHHhhcc----------------cCcceEEEEeecCCCC-CCCccceeecChhHHHHHHHhccCCcCC
Confidence 5788899999999999987 6899999999988766 9999999999999999999999999877
Q ss_pred CCCcEEEEE
Q 040456 82 AQWLEFLTS 90 (146)
Q Consensus 82 ~~~Kic~V~ 90 (146)
. +..-|.
T Consensus 235 ~--~~~~V~ 241 (369)
T KOG0123|consen 235 D--KELYVG 241 (369)
T ss_pred c--cceeec
Confidence 4 444443
No 50
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=96.64 E-value=0.004 Score=51.64 Aligned_cols=57 Identities=25% Similarity=0.288 Sum_probs=48.7
Q ss_pred CCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhc
Q 040456 4 NIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFN 76 (146)
Q Consensus 4 NIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~ 76 (146)
.+|=.-+.+.|++.++.+ |++--.-+..|-.++.++||+||-|.++++|.|..+.-+
T Consensus 19 gL~w~T~~~~l~~yFeqf----------------GeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~ 75 (247)
T KOG0149|consen 19 GLAWETHKETLRRYFEQF----------------GEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN 75 (247)
T ss_pred CcccccchHHHHHHHHHh----------------CceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC
Confidence 466667889999999984 677667788999999999999999999999999987643
No 51
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=96.60 E-value=0.0058 Score=54.97 Aligned_cols=67 Identities=24% Similarity=0.371 Sum_probs=61.5
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|.|||-.|.-++|++++.+. .++..|+-|-+|- ++-.+|-|-|-|.+++.+.+..+.+|.+.|.
T Consensus 49 ItNIpyd~rWqdLKdLvrek---------------vGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~ 112 (608)
T KOG4212|consen 49 ITNIPYDYRWQDLKDLVREK---------------VGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVN 112 (608)
T ss_pred EecCcchhhhHhHHHHHHHh---------------cCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhcccc
Confidence 67999999999999999886 6999999999995 5778999999999999999999999999998
Q ss_pred CCC
Q 040456 82 AQW 84 (146)
Q Consensus 82 ~~~ 84 (146)
.-.
T Consensus 113 GR~ 115 (608)
T KOG4212|consen 113 GRE 115 (608)
T ss_pred Cce
Confidence 833
No 52
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=96.57 E-value=0.0052 Score=55.27 Aligned_cols=69 Identities=22% Similarity=0.292 Sum_probs=56.4
Q ss_pred CCcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcc
Q 040456 1 MIKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRW 80 (146)
Q Consensus 1 MirNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w 80 (146)
.|||+|-.||=++|++-+.++ +..+ |.-| -.++..+| -|-|.++++|++.+..++|.++
T Consensus 540 iirNlP~dfTWqmlrDKfre~----------------G~v~--yadi-me~GkskG--VVrF~s~edAEra~a~Mngs~l 598 (608)
T KOG4212|consen 540 IIRNLPFDFTWQMLRDKFREI----------------GHVL--YADI-MENGKSKG--VVRFFSPEDAERACALMNGSRL 598 (608)
T ss_pred EEecCCccccHHHHHHHHHhc----------------ccee--hhhh-hccCCccc--eEEecCHHHHHHHHHHhccCcc
Confidence 489999999999999999885 3444 4444 45777888 8999999999999999999999
Q ss_pred cCCCcEEEEEec
Q 040456 81 EAQWLEFLTSAC 92 (146)
Q Consensus 81 ~~~~Kic~V~yA 92 (146)
+. ....|+|+
T Consensus 599 ~G--r~I~V~y~ 608 (608)
T KOG4212|consen 599 DG--RNIKVTYF 608 (608)
T ss_pred cC--ceeeeeeC
Confidence 87 56666663
No 53
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=96.39 E-value=0.0058 Score=56.05 Aligned_cols=73 Identities=12% Similarity=0.181 Sum_probs=64.6
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
+++||...|.++|-+.+.. .|.|--.|+.-+-.++.++||+||.|.=.+++.+.+....+.++.
T Consensus 10 V~~lp~~~~~~qL~e~FS~----------------vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~ 73 (678)
T KOG0127|consen 10 VSRLPFSSTGEQLEEFFSY----------------VGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFE 73 (678)
T ss_pred EecCCCccchhHHHHhhhc----------------ccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCccc
Confidence 6899999999999999976 578888999999999999999999999999999999998888777
Q ss_pred CCCcEEEEEec
Q 040456 82 AQWLEFLTSAC 92 (146)
Q Consensus 82 ~~~Kic~V~yA 92 (146)
. -+..|..|
T Consensus 74 G--r~l~v~~A 82 (678)
T KOG0127|consen 74 G--RILNVDPA 82 (678)
T ss_pred c--eecccccc
Confidence 6 56666665
No 54
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.30 E-value=0.031 Score=41.14 Aligned_cols=75 Identities=15% Similarity=0.173 Sum_probs=54.6
Q ss_pred CCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcccCCC
Q 040456 5 IPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWEAQW 84 (146)
Q Consensus 5 IPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~~~ 84 (146)
.|+.++-.+++..+-+.+ .....-+.+..|.. -|.==+-+.|.+.++|..|++.|||+.++.+-
T Consensus 20 vp~~~~~~d~l~~f~~~~--------------~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslE 83 (110)
T PF07576_consen 20 VPPYMTPSDFLLFFGAPF--------------REDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNSLE 83 (110)
T ss_pred eCcccccHHHHHHhhhcc--------------cccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCCCC
Confidence 466666655444443332 44566666666643 47777889999999999999999999998887
Q ss_pred -cEEEEEe-ccCc
Q 040456 85 -LEFLTSA-CGDQ 95 (146)
Q Consensus 85 -Kic~V~y-AriQ 95 (146)
-+|.|.| .+||
T Consensus 84 pE~ChvvfV~~Ve 96 (110)
T PF07576_consen 84 PETCHVVFVKSVE 96 (110)
T ss_pred CceeEEEEEEEEE
Confidence 8899988 4554
No 55
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=96.29 E-value=0.0088 Score=53.51 Aligned_cols=77 Identities=22% Similarity=0.284 Sum_probs=60.6
Q ss_pred cCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCc-cc
Q 040456 3 KNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSR-WE 81 (146)
Q Consensus 3 rNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~-w~ 81 (146)
+-++.+-|+.++.+++..+ |.+.=+|+=.|- -+.++|||||-|++.+.|...++.+||.. .+
T Consensus 130 g~lsK~~te~evr~iFs~f----------------G~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tme 192 (510)
T KOG0144|consen 130 GMLSKQCTENEVREIFSRF----------------GHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTME 192 (510)
T ss_pred hhccccccHHHHHHHHHhh----------------Cccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeec
Confidence 4467778888888888774 566667776665 47789999999999999999999999964 33
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
.-.-.+.|.||-.|-
T Consensus 193 Gcs~PLVVkFADtqk 207 (510)
T KOG0144|consen 193 GCSQPLVVKFADTQK 207 (510)
T ss_pred cCCCceEEEecccCC
Confidence 333788999998774
No 56
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.27 E-value=0.0042 Score=56.25 Aligned_cols=82 Identities=13% Similarity=0.198 Sum_probs=67.0
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
+-++|+.+++..++++|+++| .+=-+-|-+|-.++-|.||||-+|+++....+.....||.+..
T Consensus 294 v~~lp~~l~~~q~~Ell~~fg----------------~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lg 357 (500)
T KOG0120|consen 294 VGGLPLYLTEDQVKELLDSFG----------------PLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLG 357 (500)
T ss_pred hccCcCccCHHHHHHHHHhcc----------------cchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhc
Confidence 357999999999999999864 3333445677777999999999999999999999999999987
Q ss_pred CCCcEEEEEeccCcChHHHH
Q 040456 82 AQWLEFLTSACGDQGMDALK 101 (146)
Q Consensus 82 ~~~Kic~V~yAriQG~~al~ 101 (146)
. |.+.|..|-.+.+.+.+
T Consensus 358 d--~~lvvq~A~~g~~~~~~ 375 (500)
T KOG0120|consen 358 D--KKLVVQRAIVGASNANV 375 (500)
T ss_pred C--ceeEeehhhccchhccc
Confidence 7 88888887666555443
No 57
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=96.24 E-value=0.016 Score=49.34 Aligned_cols=71 Identities=21% Similarity=0.186 Sum_probs=56.0
Q ss_pred cCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcccC
Q 040456 3 KNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWEA 82 (146)
Q Consensus 3 rNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~ 82 (146)
-||++-+|+++|.+.++.++ .+-=+-+ |+ -.|||||-|.+.++|-+.+-..||.....
T Consensus 170 G~I~~~lte~~mr~~Fs~fG----------------~I~EVRv---Fk---~qGYaFVrF~tkEaAahAIv~mNntei~G 227 (321)
T KOG0148|consen 170 GNIASGLTEDLMRQTFSPFG----------------PIQEVRV---FK---DQGYAFVRFETKEAAAHAIVQMNNTEIGG 227 (321)
T ss_pred CCcCccccHHHHHHhcccCC----------------cceEEEE---ec---ccceEEEEecchhhHHHHHHHhcCceeCc
Confidence 48999999999999998753 3322222 22 36999999999999999999999998777
Q ss_pred CCcEEEEEeccCcCh
Q 040456 83 QWLEFLTSACGDQGM 97 (146)
Q Consensus 83 ~~Kic~V~yAriQG~ 97 (146)
-+..++|.+-++-
T Consensus 228 --~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 228 --QLVRCSWGKEGDD 240 (321)
T ss_pred --eEEEEeccccCCC
Confidence 7778888876653
No 58
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=96.13 E-value=0.0026 Score=55.67 Aligned_cols=66 Identities=14% Similarity=0.357 Sum_probs=53.4
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEc-eeccCC-cceeEEEEeccChHHHHHHHHHhcCCc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLP-MDFCHG-ANLGYAFVNFTTSVAAVRFAKAFNKSR 79 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLP-iDf~~~-~N~GYAFVNf~~~~~a~~f~~~f~g~~ 79 (146)
||++|+++|++.|++-|+.. ...+.|.|.- -|+... +-++.|||||..+.++..|...|+|+.
T Consensus 12 ~rrlpp~l~~~~~~eqi~p~---------------~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~i 76 (376)
T KOG1295|consen 12 VRRLPPKLTEEQLLEQINPF---------------PEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYI 76 (376)
T ss_pred eecCCCcccHHHHhhhcCCC---------------ccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceE
Confidence 78999999999999999863 5666666544 565533 337889999999999999999999987
Q ss_pred ccC
Q 040456 80 WEA 82 (146)
Q Consensus 80 w~~ 82 (146)
+=.
T Consensus 77 fld 79 (376)
T KOG1295|consen 77 FLD 79 (376)
T ss_pred Eec
Confidence 644
No 59
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.09 E-value=0.0053 Score=57.34 Aligned_cols=75 Identities=19% Similarity=0.323 Sum_probs=63.7
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|||||=.-|..++.+++.. +|++=-+-||--+...+.+|+|||-|.+|..|.+..+++.+..+=
T Consensus 618 VRNipFeAt~rEVr~LF~a----------------FGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHly 681 (725)
T KOG0110|consen 618 VRNIPFEATKREVRKLFTA----------------FGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLY 681 (725)
T ss_pred eeccchHHHHHHHHHHHhc----------------ccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhccccee
Confidence 7999999999999999876 567778889988888999999999999999999999999865543
Q ss_pred CCCcEEEEEeccC
Q 040456 82 AQWLEFLTSACGD 94 (146)
Q Consensus 82 ~~~Kic~V~yAri 94 (146)
. ..+.+.||.-
T Consensus 682 G--RrLVLEwA~~ 692 (725)
T KOG0110|consen 682 G--RRLVLEWAKS 692 (725)
T ss_pred c--hhhheehhcc
Confidence 3 6677888853
No 60
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=96.03 E-value=0.012 Score=47.12 Aligned_cols=60 Identities=15% Similarity=0.248 Sum_probs=47.2
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
+-|+|++-|..+|-.+|... |..--+. .-..--|||||-|.++.+|..+...++|+...
T Consensus 15 VGnL~~~a~k~eLE~~F~~y----------------G~lrsvW-----vArnPPGfAFVEFed~RDA~DAvr~LDG~~~c 73 (195)
T KOG0107|consen 15 VGNLGSRATKRELERAFSKY----------------GPLRSVW-----VARNPPGFAFVEFEDPRDAEDAVRYLDGKDIC 73 (195)
T ss_pred eccCCCCcchHHHHHHHHhc----------------CcceeEE-----EeecCCCceEEeccCcccHHHHHhhcCCcccc
Confidence 45899999999999888764 3222222 23355799999999999999999999999866
Q ss_pred C
Q 040456 82 A 82 (146)
Q Consensus 82 ~ 82 (146)
.
T Consensus 74 G 74 (195)
T KOG0107|consen 74 G 74 (195)
T ss_pred C
Confidence 6
No 61
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.99 E-value=0.041 Score=40.98 Aligned_cols=69 Identities=12% Similarity=0.169 Sum_probs=52.6
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|||+|-+.|.+++.+++.+.+ ..-= +++ -.+..-.|=|||=+.+..+|.+..+.++|+...
T Consensus 23 irNLp~~ITseemydlFGkyg----------------~IrQ--IRi-G~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~ 83 (124)
T KOG0114|consen 23 IRNLPFKITSEEMYDLFGKYG----------------TIRQ--IRI-GNTKETRGTAFVVYEDIFDAKKACDHLSGYNVD 83 (124)
T ss_pred EecCCccccHHHHHHHhhccc----------------ceEE--EEe-cCccCcCceEEEEehHhhhHHHHHHHhcccccC
Confidence 799999999999999986542 2111 122 235677899999999999999999999999876
Q ss_pred CCCcEEEEEe
Q 040456 82 AQWLEFLTSA 91 (146)
Q Consensus 82 ~~~Kic~V~y 91 (146)
. --+.|-|
T Consensus 84 ~--ryl~vly 91 (124)
T KOG0114|consen 84 N--RYLVVLY 91 (124)
T ss_pred C--ceEEEEe
Confidence 6 4444444
No 62
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.89 E-value=0.023 Score=50.98 Aligned_cols=71 Identities=18% Similarity=0.181 Sum_probs=54.7
Q ss_pred CCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcccCCC
Q 040456 5 IPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWEAQW 84 (146)
Q Consensus 5 IPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~~~ 84 (146)
+|+.+|..||+.++..++... -|+--++ | .--|.=-+-|-|.+.++|..|++.|||+.+...-
T Consensus 82 VP~~mt~~Dll~F~~~~~~~I--------------~~irivR-d--~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le 144 (493)
T KOG0804|consen 82 VPAYMTSHDLLRFCASFIKQI--------------SDIRIVR-D--GMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLE 144 (493)
T ss_pred ccccccHHHHHHHHHHHhhhh--------------heeEEee-c--CCCceEEEEEEeccchhHHHHHHHcCCCcCCCCC
Confidence 799999999999999876432 2223333 2 2233334669999999999999999999998877
Q ss_pred -cEEEEEec
Q 040456 85 -LEFLTSAC 92 (146)
Q Consensus 85 -Kic~V~yA 92 (146)
-+|.+-|+
T Consensus 145 ~e~Chll~V 153 (493)
T KOG0804|consen 145 PEVCHLLYV 153 (493)
T ss_pred ccceeEEEE
Confidence 89999886
No 63
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.0078 Score=50.05 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=51.4
Q ss_pred CCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcccCCCcEEEEEeccC
Q 040456 36 CRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWEAQWLEFLTSACGD 94 (146)
Q Consensus 36 ~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~~~Kic~V~yAri 94 (146)
.+|.+-=+-+|+|..+.-.+|+|||-|.-.++|...++-+|+..+-. ++..|.||+.
T Consensus 33 PFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~G--rtirVN~AkP 89 (298)
T KOG0111|consen 33 PFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFG--RTIRVNLAKP 89 (298)
T ss_pred cccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcc--eeEEEeecCC
Confidence 36777778899999999999999999999999999999999998766 9999999975
No 64
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=95.25 E-value=0.019 Score=49.05 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=57.2
Q ss_pred cCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcccC
Q 040456 3 KNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWEA 82 (146)
Q Consensus 3 rNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~ 82 (146)
=.+|..|++.+|++++-.+ |..=.--+=+|-.|..++-++||.|-++..+...++++||.....
T Consensus 291 YHLPQEFgDaEliQmF~PF----------------GhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGM 354 (371)
T KOG0146|consen 291 YHLPQEFGDAELIQMFLPF----------------GHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGM 354 (371)
T ss_pred EeCchhhccHHHHHHhccc----------------cceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhh
Confidence 3589999999999999764 444445566899999999999999999999999999999998766
Q ss_pred CCcEEEE
Q 040456 83 QWLEFLT 89 (146)
Q Consensus 83 ~~Kic~V 89 (146)
|.+.|
T Consensus 355 --KRLKV 359 (371)
T KOG0146|consen 355 --KRLKV 359 (371)
T ss_pred --hhhhh
Confidence 54433
No 65
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=95.19 E-value=0.021 Score=49.03 Aligned_cols=90 Identities=17% Similarity=0.270 Sum_probs=71.2
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|-|+|.+-+...|..+|+..|+. -+-|-+ +-||||-..+..++...++-+||+++.
T Consensus 7 IGNLp~~~~~~elr~lFe~ygkV-------------lECDIv-----------KNYgFVHiEdktaaedairNLhgYtLh 62 (346)
T KOG0109|consen 7 IGNLPREATEQELRSLFEQYGKV-------------LECDIV-----------KNYGFVHIEDKTAAEDAIRNLHGYTLH 62 (346)
T ss_pred ccCCCcccchHHHHHHHHhhCce-------------Eeeeee-----------cccceEEeecccccHHHHhhcccceec
Confidence 67999999999999999998742 233332 459999999999999999999999998
Q ss_pred CCCcEEEEEeccCcChHHHHHHhccccccCCCCCcC
Q 040456 82 AQWLEFLTSACGDQGMDALKIHFQEKCFNCHTDSYL 117 (146)
Q Consensus 82 ~~~Kic~V~yAriQG~~al~~hf~ns~~~~~~~~y~ 117 (146)
. +...|..++--.+....-|..|.+..|..+|.|
T Consensus 63 g--~nInVeaSksKsk~stkl~vgNis~tctn~ElR 96 (346)
T KOG0109|consen 63 G--VNINVEASKSKSKASTKLHVGNISPTCTNQELR 96 (346)
T ss_pred c--eEEEEEeccccCCCccccccCCCCccccCHHHh
Confidence 8 777777776666666666777877777665544
No 66
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=95.16 E-value=0.066 Score=50.96 Aligned_cols=74 Identities=15% Similarity=0.244 Sum_probs=63.5
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|.-||.+.++.+|.++|+++ |+.-.+-| --|+|-|||-+.+.++|.+..+++++++..
T Consensus 426 vG~i~k~v~e~dL~~~feef----------------GeiqSi~l------i~~R~cAfI~M~~RqdA~kalqkl~n~kv~ 483 (894)
T KOG0132|consen 426 VGGIPKNVTEQDLANLFEEF----------------GEIQSIIL------IPPRGCAFIKMVRRQDAEKALQKLSNVKVA 483 (894)
T ss_pred eccccchhhHHHHHHHHHhc----------------ccceeEee------ccCCceeEEEEeehhHHHHHHHHHhccccc
Confidence 45699999999999999985 55555554 457899999999999999999999988876
Q ss_pred CCCcEEEEEeccCcChHH
Q 040456 82 AQWLEFLTSACGDQGMDA 99 (146)
Q Consensus 82 ~~~Kic~V~yAriQG~~a 99 (146)
. |...|.||.==|..+
T Consensus 484 ~--k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 484 D--KTIKIAWAVGKGPKS 499 (894)
T ss_pred c--eeeEEeeeccCCcch
Confidence 6 999999999888766
No 67
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=94.49 E-value=0.061 Score=45.41 Aligned_cols=41 Identities=24% Similarity=0.277 Sum_probs=35.6
Q ss_pred eEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcccC
Q 040456 42 FLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWEA 82 (146)
Q Consensus 42 FlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~ 82 (146)
=--+.-|-+|+.+.||+||.|.++.++.+..+.++|+--..
T Consensus 219 ~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgs 259 (290)
T KOG0226|consen 219 KAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGS 259 (290)
T ss_pred hccccccccccccccceeeeecCHHHHHHHHHhhccccccc
Confidence 33567889999999999999999999999999999976443
No 68
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=94.18 E-value=0.078 Score=43.20 Aligned_cols=72 Identities=10% Similarity=0.170 Sum_probs=57.6
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcc-eeEEEEeccChHHHHHHHHHhcCCcc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGAN-LGYAFVNFTTSVAAVRFAKAFNKSRW 80 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N-~GYAFVNf~~~~~a~~f~~~f~g~~w 80 (146)
+-|+|..+...++.+++-+. |.+-+ ||.++.-- ..||||-|.++.+|...+..-+|+-+
T Consensus 11 vGNLP~diRekeieDlFyKy----------------g~i~~----ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdy 70 (241)
T KOG0105|consen 11 VGNLPGDIREKEIEDLFYKY----------------GRIRE----IELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDY 70 (241)
T ss_pred ecCCCcchhhccHHHHHhhh----------------cceEE----EEeccCCCCCCeeEEEecCccchhhhhhccccccc
Confidence 45999999999999999764 34433 45565544 88999999999999999999999988
Q ss_pred cCCCcEEEEEeccCc
Q 040456 81 EAQWLEFLTSACGDQ 95 (146)
Q Consensus 81 ~~~~Kic~V~yAriQ 95 (146)
.. -.+.|.+|+--
T Consensus 71 dg--~rLRVEfprgg 83 (241)
T KOG0105|consen 71 DG--CRLRVEFPRGG 83 (241)
T ss_pred Cc--ceEEEEeccCC
Confidence 87 56778888654
No 69
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=94.02 E-value=0.15 Score=39.73 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=62.2
Q ss_pred CCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcccCC
Q 040456 4 NIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWEAQ 83 (146)
Q Consensus 4 NIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~~ 83 (146)
+|-..-|.+++-+.+-+ .|++-=+-|-.|-+|+--+|||.|-+.+.+.|...+...||..+-.
T Consensus 79 gvHeEatEedi~d~F~d----------------yGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~- 141 (170)
T KOG0130|consen 79 GVHEEATEEDIHDKFAD----------------YGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLG- 141 (170)
T ss_pred ccCcchhHHHHHHHHhh----------------cccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhC-
Confidence 34445566666666654 4677778899999999999999999999999999999999987654
Q ss_pred CcEEEEEeccCcChH
Q 040456 84 WLEFLTSACGDQGMD 98 (146)
Q Consensus 84 ~Kic~V~yAriQG~~ 98 (146)
...+|.||=+-|++
T Consensus 142 -q~v~VDw~Fv~gp~ 155 (170)
T KOG0130|consen 142 -QNVSVDWCFVKGPE 155 (170)
T ss_pred -CceeEEEEEecCCc
Confidence 67889999877764
No 70
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=93.79 E-value=0.19 Score=40.60 Aligned_cols=77 Identities=13% Similarity=0.066 Sum_probs=59.3
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|+-...++..|-+++..++.- ...-.-+++ -.|+...|+|||||.+-+++.......+|+-..
T Consensus 101 vgNLd~~vDe~~L~dtFsafG~l------------~~~P~i~rd---~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~ 165 (203)
T KOG0131|consen 101 VGNLDPEVDEKLLYDTFSAFGVL------------ISPPKIMRD---PDTGNPKGFGFINYASFEASDAAIGSMNGQYLC 165 (203)
T ss_pred ccccCcchhHHHHHHHHHhcccc------------ccCCccccc---ccCCCCCCCeEEechhHHHHHHHHHHhccchhc
Confidence 56777788999999999876531 222233343 346788899999999999999999999999877
Q ss_pred CCCcEEEEEeccCc
Q 040456 82 AQWLEFLTSACGDQ 95 (146)
Q Consensus 82 ~~~Kic~V~yAriQ 95 (146)
. ....|+||.--
T Consensus 166 n--r~itv~ya~k~ 177 (203)
T KOG0131|consen 166 N--RPITVSYAFKK 177 (203)
T ss_pred C--CceEEEEEEec
Confidence 6 67788888543
No 71
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=92.91 E-value=0.035 Score=50.68 Aligned_cols=22 Identities=45% Similarity=0.666 Sum_probs=20.0
Q ss_pred CCcCCCCccCHHHHHHHHHhhch
Q 040456 1 MIKNIPNRFKRHDLLQILDNHCW 23 (146)
Q Consensus 1 MirNIPnk~t~~~L~~~ld~~c~ 23 (146)
||+|||||||+.||++. |+.++
T Consensus 392 ~iknipNK~T~~ml~~~-d~~~~ 413 (549)
T KOG4660|consen 392 MIKNIPNKYTSKMLLAA-DEKNK 413 (549)
T ss_pred HhhccCchhhHHhhhhh-hcccc
Confidence 89999999999999999 87654
No 72
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=92.78 E-value=0.41 Score=39.84 Aligned_cols=72 Identities=21% Similarity=0.264 Sum_probs=55.5
Q ss_pred CCcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceec-cCCcceeEEEEeccChHHHHHHHHHhcCCc
Q 040456 1 MIKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDF-CHGANLGYAFVNFTTSVAAVRFAKAFNKSR 79 (146)
Q Consensus 1 MirNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf-~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~ 79 (146)
+|-|+|..+++++|+++|.++. ..=-.++.+ .++.+.|=|=|-|...++|.+.++.|||..
T Consensus 87 ~v~NL~~~V~~~Dl~eLF~~~~------------------~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ 148 (243)
T KOG0533|consen 87 NVSNLPYGVIDADLKELFAEFG------------------ELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVA 148 (243)
T ss_pred eeecCCcCcchHHHHHHHHHhc------------------cceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcc
Confidence 5789999999999999998852 111122333 367888999999999999999999999988
Q ss_pred ccCCC-cEEEEE
Q 040456 80 WEAQW-LEFLTS 90 (146)
Q Consensus 80 w~~~~-Kic~V~ 90 (146)
++... |+..|.
T Consensus 149 ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 149 LDGRPMKIEIIS 160 (243)
T ss_pred cCCceeeeEEec
Confidence 88755 444443
No 73
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=92.26 E-value=0.34 Score=45.01 Aligned_cols=47 Identities=26% Similarity=0.433 Sum_probs=42.3
Q ss_pred CCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcccCCC
Q 040456 37 RSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWEAQW 84 (146)
Q Consensus 37 ~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~~~ 84 (146)
.|+.-=+|.|+|-.++ .+||+|+-+.++..|....+.+||+++....
T Consensus 88 ~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 88 AGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred hccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 3566778999999988 8999999999999999999999999998644
No 74
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=91.73 E-value=0.68 Score=35.73 Aligned_cols=107 Identities=13% Similarity=0.160 Sum_probs=75.6
Q ss_pred cCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcccC
Q 040456 3 KNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWEA 82 (146)
Q Consensus 3 rNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~ 82 (146)
-||.-.-|++.+-+++... |..--+=+=.|--++---|+|||-|-+.++|....+-.+|.+++.
T Consensus 42 gNlSfyttEEqiyELFs~c----------------G~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLdd 105 (153)
T KOG0121|consen 42 GNLSFYTTEEQIYELFSKC----------------GDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDD 105 (153)
T ss_pred eeeeeeecHHHHHHHHHhc----------------cchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccc
Confidence 4666666888888888763 556666677788888888999999999999999999999999998
Q ss_pred CCcEEEEEeccCcChHHHHHHhccccccCCCCCcCceEEeCCCCCCCC
Q 040456 83 QWLEFLTSACGDQGMDALKIHFQEKCFNCHTDSYLPVILAPPRDGWMR 130 (146)
Q Consensus 83 ~~Kic~V~yAriQG~~al~~hf~ns~~~~~~~~y~P~~f~p~~dg~~~ 130 (146)
++..|.|-. |...=.+.=+..+--+-.++|+-. +.|+|+|...
T Consensus 106 --r~ir~D~D~--GF~eGRQyGRG~sGGqVrde~r~d-~D~~rggy~k 148 (153)
T KOG0121|consen 106 --RPIRIDWDA--GFVEGRQYGRGKSGGQVRDEYRTD-YDPGRGGYGK 148 (153)
T ss_pred --cceeeeccc--cchhhhhhcCCCCCCeechhhhhh-cCcccCccch
Confidence 888887731 222212222222233445677654 7777777643
No 75
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=91.19 E-value=0.73 Score=43.53 Aligned_cols=71 Identities=20% Similarity=0.270 Sum_probs=49.8
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCc----ceeEEEEeccChHHHHHHHHHhcC
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGA----NLGYAFVNFTTSVAAVRFAKAFNK 77 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~----N~GYAFVNf~~~~~a~~f~~~f~g 77 (146)
++|++=.-|+++|...+... |.+=-+-++.- +.+| ++|||||-|.+++.|...++.++|
T Consensus 520 vkNlnf~Tt~e~l~~~F~k~----------------G~VlS~~I~kk-kd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqg 582 (725)
T KOG0110|consen 520 VKNLNFDTTLEDLEDLFSKQ----------------GTVLSIEISKK-KDPANKYLSMGFGFVEFAKPESAQAALKALQG 582 (725)
T ss_pred hhcCCcccchhHHHHHHHhc----------------CeEEEEEEecc-ccccccccccceeEEEecCHHHHHHHHHHhcC
Confidence 57888888999988887542 22222222222 2333 559999999999999999999999
Q ss_pred CcccCCCcEEEE
Q 040456 78 SRWEAQWLEFLT 89 (146)
Q Consensus 78 ~~w~~~~Kic~V 89 (146)
...+...-.|++
T Consensus 583 tvldGH~l~lk~ 594 (725)
T KOG0110|consen 583 TVLDGHKLELKI 594 (725)
T ss_pred ceecCceEEEEe
Confidence 998875433333
No 76
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.08 E-value=0.46 Score=42.08 Aligned_cols=58 Identities=17% Similarity=0.143 Sum_probs=49.7
Q ss_pred cCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcccC
Q 040456 9 FKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWEA 82 (146)
Q Consensus 9 ~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~ 82 (146)
-|.++|--|+.. +|..--+=+.-|++|+-++-||||-|.+.+..++++-.+.+.....
T Consensus 251 TtDeDLeiIFSr----------------FG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDD 308 (479)
T KOG0415|consen 251 TTDEDLEIIFSR----------------FGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDD 308 (479)
T ss_pred ccccchhhHHhh----------------cccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeecc
Confidence 456667666665 5778888899999999999999999999999999999999887766
No 77
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=88.90 E-value=2.2 Score=35.82 Aligned_cols=75 Identities=17% Similarity=0.226 Sum_probs=58.8
Q ss_pred CCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCC-cceeEEEEeccChHHHHHHHHHhcCCcccC
Q 040456 4 NIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHG-ANLGYAFVNFTTSVAAVRFAKAFNKSRWEA 82 (146)
Q Consensus 4 NIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~-~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~ 82 (146)
-+|++....+|-.++.++ ..|.=.-|.+.-+.+ .-.-.||+-|++.+.|....+.+||.+++.
T Consensus 41 GLP~DvKpREiynLFR~f----------------~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDp 104 (284)
T KOG1457|consen 41 GLPNDVKPREIYNLFRRF----------------HGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDP 104 (284)
T ss_pred cCCcccCHHHHHHHhccC----------------CCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeecc
Confidence 479999999999998763 355555666655432 223689999999999999999999999987
Q ss_pred CC-cEEEEEeccC
Q 040456 83 QW-LEFLTSACGD 94 (146)
Q Consensus 83 ~~-Kic~V~yAri 94 (146)
-. .++.|..|+-
T Consensus 105 E~~stLhiElAKS 117 (284)
T KOG1457|consen 105 ETGSTLHIELAKS 117 (284)
T ss_pred ccCceeEeeehhc
Confidence 66 7888888854
No 78
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=88.81 E-value=0.62 Score=41.49 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=44.4
Q ss_pred CCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcccCCC-cE
Q 040456 37 RSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWEAQW-LE 86 (146)
Q Consensus 37 ~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~~~-Ki 86 (146)
+|.+-.+-+-.|..|+-.+|||||-+.-|++|.-..+.+||..+..-+ |+
T Consensus 137 FGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKV 187 (544)
T KOG0124|consen 137 FGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKV 187 (544)
T ss_pred CCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccc
Confidence 567777888899999999999999999999999999999999887755 44
No 79
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=88.41 E-value=0.047 Score=44.21 Aligned_cols=73 Identities=18% Similarity=0.200 Sum_probs=59.0
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|-|||-.+|+.+++-+|.+. |+.==+-|..|-+|+-+.||||.-+.+....+-+++-|||.+.-
T Consensus 40 iggl~~~LtEgDil~VFSqy----------------Ge~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~ 103 (219)
T KOG0126|consen 40 IGGLPYELTEGDILCVFSQY----------------GEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKIL 103 (219)
T ss_pred ECCCcccccCCcEEEEeecc----------------CceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceec
Confidence 56889999999999888764 45555789999999999999999999988888889999998876
Q ss_pred CCC-cEEEEE
Q 040456 82 AQW-LEFLTS 90 (146)
Q Consensus 82 ~~~-Kic~V~ 90 (146)
.-. +|=.|+
T Consensus 104 gRtirVDHv~ 113 (219)
T KOG0126|consen 104 GRTIRVDHVS 113 (219)
T ss_pred ceeEEeeecc
Confidence 633 444443
No 80
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=88.15 E-value=0.78 Score=42.87 Aligned_cols=71 Identities=17% Similarity=0.245 Sum_probs=57.3
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|+=.=||...|+.+|...|-. --|| =||-. +.-|||-+.+.+.|..-..++||.+|+
T Consensus 449 I~nLvRPFTlgQLkelL~rtgg~--------------Vee~---WmDkI----KShCyV~yss~eEA~atr~AlhnV~WP 507 (718)
T KOG2416|consen 449 IDNLVRPFTLGQLKELLGRTGGN--------------VEEF---WMDKI----KSHCYVSYSSVEEAAATREALHNVQWP 507 (718)
T ss_pred eecccccchHHHHHHHHhhccCc--------------hHHH---HHHHh----hcceeEecccHHHHHHHHHHHhccccC
Confidence 67777889999999999877621 1122 24432 457899999999999999999999999
Q ss_pred CCC-cEEEEEecc
Q 040456 82 AQW-LEFLTSACG 93 (146)
Q Consensus 82 ~~~-Kic~V~yAr 93 (146)
..+ |.+.+.|++
T Consensus 508 ~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 508 PSNPKHLIADFVR 520 (718)
T ss_pred CCCCceeEeeecc
Confidence 988 999999985
No 81
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=87.86 E-value=0.67 Score=39.81 Aligned_cols=71 Identities=10% Similarity=0.152 Sum_probs=54.8
Q ss_pred CCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcccCC
Q 040456 4 NIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWEAQ 83 (146)
Q Consensus 4 NIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~~ 83 (146)
-||...+.++|++.++.. +...=.=+++|..+..++|++||-|.+.+.+.+.... +...+
T Consensus 104 G~~~~~~e~~~r~yfe~~----------------g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~----~f~~~ 163 (311)
T KOG4205|consen 104 GLPPDTTEEDFKDYFEQF----------------GKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ----KFHDF 163 (311)
T ss_pred CcCCCCchHHHhhhhhcc----------------ceeEeeEEeecccccccccceeeEeccccccceeccc----ceeee
Confidence 489999999999999874 5666677999999999999999999998887644321 11223
Q ss_pred C-cEEEEEeccC
Q 040456 84 W-LEFLTSACGD 94 (146)
Q Consensus 84 ~-Kic~V~yAri 94 (146)
. |.|+|.-|..
T Consensus 164 ~gk~vevkrA~p 175 (311)
T KOG4205|consen 164 NGKKVEVKRAIP 175 (311)
T ss_pred cCceeeEeeccc
Confidence 3 8888877743
No 82
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=83.78 E-value=5.9 Score=34.16 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=42.1
Q ss_pred CCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcc-cCCCcEEEEEeccCc
Q 040456 37 RSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRW-EAQWLEFLTSACGDQ 95 (146)
Q Consensus 37 ~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w-~~~~Kic~V~yAriQ 95 (146)
+|..|-+-+ .---.+.++|-|||.|.+..+|...+..+||.+- +....-+.|.||..-
T Consensus 43 fG~~~e~tv-lrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ADTd 101 (371)
T KOG0146|consen 43 FGNIEECTV-LRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFADTD 101 (371)
T ss_pred cCCcceeEE-ecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEeccch
Confidence 455555532 1223477899999999999999999999999762 222267888999665
No 83
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=83.47 E-value=1.7 Score=35.71 Aligned_cols=50 Identities=18% Similarity=0.233 Sum_probs=42.0
Q ss_pred EEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcccCCCcEEEEEeccCc
Q 040456 43 LYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWEAQWLEFLTSACGDQ 95 (146)
Q Consensus 43 lYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~~~Kic~V~yAriQ 95 (146)
+=+|.|.-++...|||||-|.+.+.+...++ ++|..... ...+|++.++.
T Consensus 131 ~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~--~~i~vt~~r~~ 180 (231)
T KOG4209|consen 131 VTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPG--PAIEVTLKRTN 180 (231)
T ss_pred eeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccc--ccceeeeeeee
Confidence 4477787777799999999999999999999 99988777 77778887665
No 84
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=81.32 E-value=2.3 Score=30.62 Aligned_cols=73 Identities=16% Similarity=0.267 Sum_probs=37.7
Q ss_pred cCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCC---c
Q 040456 3 KNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKS---R 79 (146)
Q Consensus 3 rNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~---~ 79 (146)
.+++...++++|++.|.++ +...| +||..+..- |||=|.++++|..+...+.-. .
T Consensus 7 ~g~~~~~~re~iK~~f~~~----------------g~V~y----VD~~~G~~~--g~VRf~~~~~A~~a~~~~~~~~~~~ 64 (105)
T PF08777_consen 7 SGLGEPTSREDIKEAFSQF----------------GEVAY----VDFSRGDTE--GYVRFKTPEAAQKALEKLKEANDGK 64 (105)
T ss_dssp EE--SS--HHHHHHHT-SS------------------EEE----EE--TT-SE--EEEEESS---HHHHHHHHHHTTTS-
T ss_pred ecCCCCcCHHHHHHHHHhc----------------CCcce----EEecCCCCE--EEEEECCcchHHHHHHHHHhccCCc
Confidence 3567788999999999764 44444 577777765 569999999999888887544 2
Q ss_pred ccCCCcEEEEEeccCcChHH
Q 040456 80 WEAQWLEFLTSACGDQGMDA 99 (146)
Q Consensus 80 w~~~~Kic~V~yAriQG~~a 99 (146)
..- +-.++++--+.|.+.
T Consensus 65 ~~i--~~~~~~~~vLeGeeE 82 (105)
T PF08777_consen 65 LKI--KGKEVTLEVLEGEEE 82 (105)
T ss_dssp B-T--TSSSEEEE---HHHH
T ss_pred eEE--cCceEEEEECCCHHH
Confidence 111 233456666777654
No 85
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=81.01 E-value=2.9 Score=37.38 Aligned_cols=57 Identities=12% Similarity=0.187 Sum_probs=46.2
Q ss_pred CCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcC
Q 040456 5 IPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNK 77 (146)
Q Consensus 5 IPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g 77 (146)
|-.+++++|++..++. +|++-.+-|--+...+-.+||+||-|.+.+.-...+..+|=
T Consensus 218 vHpDLSe~DiKSVFEA----------------FG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNl 274 (544)
T KOG0124|consen 218 VHPDLSETDIKSVFEA----------------FGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNL 274 (544)
T ss_pred cCCCccHHHHHHHHHh----------------hcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcch
Confidence 4467788888888876 57888899999999999999999999887766666666653
No 86
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=79.98 E-value=2.4 Score=34.79 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=52.9
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|.++|++-.+++|-+++..... ..|. ..-.||+||-|.++.+|...+..++|+.+.
T Consensus 6 vg~~~~~~~~~d~E~~f~~yg~---------------~~d~---------~mk~gf~fv~fed~rda~Dav~~l~~~~l~ 61 (216)
T KOG0106|consen 6 IGRLPYRARERDVERFFKGYGK---------------IPDA---------DMKNGFGFVEFEDPRDADDAVHDLDGKELC 61 (216)
T ss_pred ecccCCccchhHHHHHHhhccc---------------cccc---------eeecccceeccCchhhhhcccchhcCceec
Confidence 5689999999999999987532 1111 123588899999999999999999999887
Q ss_pred CCCcEEEEEeccC
Q 040456 82 AQWLEFLTSACGD 94 (146)
Q Consensus 82 ~~~Kic~V~yAri 94 (146)
. ....|.||+.
T Consensus 62 ~--e~~vve~~r~ 72 (216)
T KOG0106|consen 62 G--ERLVVEHARG 72 (216)
T ss_pred c--eeeeeecccc
Confidence 6 4488888885
No 87
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=79.62 E-value=2.5 Score=35.77 Aligned_cols=65 Identities=26% Similarity=0.345 Sum_probs=51.6
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccC--------CcceeE----EEEeccChHHHH
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCH--------GANLGY----AFVNFTTSVAAV 69 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~--------~~N~GY----AFVNf~~~~~a~ 69 (146)
|-|||+.|+...|.+||.. .|..+-+||--.-.+ +-|.++ +.|-|.+...|.
T Consensus 79 lS~IPp~m~~~rlReil~~----------------yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK 142 (278)
T KOG3152|consen 79 LSNIPPYMDPVRLREILSQ----------------YGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAK 142 (278)
T ss_pred eccCCCccCHHHHHHHHHh----------------ccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHH
Confidence 5699999999999999986 479999999654333 445554 568999999999
Q ss_pred HHHHHhcCCcccC
Q 040456 70 RFAKAFNKSRWEA 82 (146)
Q Consensus 70 ~f~~~f~g~~w~~ 82 (146)
+-+..+||.....
T Consensus 143 ~iAe~Lnn~~Igg 155 (278)
T KOG3152|consen 143 RIAELLNNTPIGG 155 (278)
T ss_pred HHHHHhCCCccCC
Confidence 9999998766544
No 88
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=78.83 E-value=8.5 Score=35.57 Aligned_cols=54 Identities=13% Similarity=0.138 Sum_probs=43.3
Q ss_pred CCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcccCCCcEEEEEeccCcCh
Q 040456 37 RSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWEAQWLEFLTSACGDQGM 97 (146)
Q Consensus 37 ~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~~~Kic~V~yAriQG~ 97 (146)
.|+.-=+|+ | +.+.|.-||-|.+.++|....+++||.++.. |....+|-.++--
T Consensus 477 ~g~v~hi~v--d---~ns~g~VYvrc~s~~~A~~a~~alhgrWF~g--r~Ita~~~~~~~Y 530 (549)
T KOG0147|consen 477 HGKVCHIFV--D---KNSAGCVYVRCPSAEAAGTAVKALHGRWFAG--RMITAKYLPLERY 530 (549)
T ss_pred cCCeeEEEE--c---cCCCceEEEecCcHHHHHHHHHHHhhhhhcc--ceeEEEEeehhhh
Confidence 566666666 2 2334999999999999999999999999887 8988888876643
No 89
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=78.19 E-value=3.2 Score=37.22 Aligned_cols=79 Identities=16% Similarity=0.312 Sum_probs=62.2
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccce--EEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDF--LYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSR 79 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDF--lYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~ 79 (146)
+|-+|-.-|.++++++|+++. -..|| +-+.++- .+.--|=|||-|++.++|....+.-+++.
T Consensus 285 LRGLPy~AtvEdIL~FlgdFa---------------~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~ 348 (508)
T KOG1365|consen 285 LRGLPYEATVEDILDFLGDFA---------------TDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKL 348 (508)
T ss_pred ecCCChhhhHHHHHHHHHHHh---------------hhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhh
Confidence 578999999999999999873 46677 6666664 46778999999999999999998888877
Q ss_pred ccCCCcEEEEEeccCcChH
Q 040456 80 WEAQWLEFLTSACGDQGMD 98 (146)
Q Consensus 80 w~~~~Kic~V~yAriQG~~ 98 (146)
... ..|||--+..--.+
T Consensus 349 mk~--RYiEvfp~S~eeln 365 (508)
T KOG1365|consen 349 MKS--RYIEVFPCSVEELN 365 (508)
T ss_pred ccc--ceEEEeeccHHHHH
Confidence 644 68888766554443
No 90
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=76.59 E-value=7.7 Score=34.20 Aligned_cols=69 Identities=19% Similarity=0.114 Sum_probs=44.7
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+++=+..+..+|.+-+-+ .|..-++-+- .-.|-|||+|++.++|+....+.-+ |-
T Consensus 233 Ig~l~d~v~e~dIrdhFyq----------------yGeirsi~~~------~~~~CAFv~ftTR~aAE~Aae~~~n--~l 288 (377)
T KOG0153|consen 233 IGGLNDEVLEQDIRDHFYQ----------------YGEIRSIRIL------PRKGCAFVTFTTREAAEKAAEKSFN--KL 288 (377)
T ss_pred ecccccchhHHHHHHHHhh----------------cCCeeeEEee------cccccceeeehhhHHHHHHHHhhcc--ee
Confidence 3445456666666666654 3555555321 2245899999999999988887655 33
Q ss_pred CCC-cEEEEEeccC
Q 040456 82 AQW-LEFLTSACGD 94 (146)
Q Consensus 82 ~~~-Kic~V~yAri 94 (146)
... ..+.|.|++-
T Consensus 289 vI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 289 VINGFRLKIKWGRP 302 (377)
T ss_pred eecceEEEEEeCCC
Confidence 333 5667779876
No 91
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=74.73 E-value=4.9 Score=35.96 Aligned_cols=56 Identities=20% Similarity=0.248 Sum_probs=40.2
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccC--CcceeEEEEeccChHHHHHHHHHh
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCH--GANLGYAFVNFTTSVAAVRFAKAF 75 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~--~~N~GYAFVNf~~~~~a~~f~~~f 75 (146)
++|||-.-|..+|.+++..++. .-=. .|.-++ +.+..||||-|.+.+++...+++-
T Consensus 293 V~nlP~da~~~~l~~~Fk~FG~----------------Ik~~--~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As 350 (419)
T KOG0116|consen 293 VKNLPPDATPAELEEVFKQFGP----------------IKEG--GIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS 350 (419)
T ss_pred eecCCCCCCHHHHHHHHhhccc----------------cccc--ceEEeccCCCcCceEEEEEeecchhhhhhhcC
Confidence 6899999999999999987642 1111 222222 334499999999999988777664
No 92
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=72.93 E-value=3.8 Score=35.24 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=45.8
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHH
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKA 74 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~ 74 (146)
|-.|+...|++.|.+.+.. .|+.+=+++=.|-.++..+||+||+|.+++.+..-...
T Consensus 11 iGgisw~ttee~Lr~yf~~----------------~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~ 67 (311)
T KOG4205|consen 11 IGGLSWETTEESLREYFSQ----------------FGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA 67 (311)
T ss_pred ecCcCccccHHHHHHHhcc----------------cCceeeEEEeccCCCCCcccccceecCCCcchheeecc
Confidence 3468889999999998843 56777788889999999999999999988766544433
No 93
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=70.30 E-value=9.7 Score=34.88 Aligned_cols=57 Identities=23% Similarity=0.297 Sum_probs=45.0
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHH
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKA 74 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~ 74 (146)
||=+|=.-|.+++.++|.-. .-.=|=.-||+|..-+ .-|=|||-|.+.+.|+...+.
T Consensus 108 LRGLPfscte~dI~~FFaGL---------------~Iv~~gi~l~~d~rgR-~tGEAfVqF~sqe~ae~Al~r 164 (510)
T KOG4211|consen 108 LRGLPFSCTEEDIVEFFAGL---------------EIVPDGILLPMDQRGR-PTGEAFVQFESQESAEIALGR 164 (510)
T ss_pred ecCCCccCcHHHHHHHhcCC---------------cccccceeeeccCCCC-cccceEEEecCHHHHHHHHHH
Confidence 57889999999999998532 1122245699999888 999999999999999876654
No 94
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=63.94 E-value=17 Score=28.95 Aligned_cols=51 Identities=12% Similarity=0.085 Sum_probs=34.4
Q ss_pred CccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhc--CCcccCCCcEEEEEeccCcCh
Q 040456 38 SEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFN--KSRWEAQWLEFLTSACGDQGM 97 (146)
Q Consensus 38 ~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~--g~~w~~~~Kic~V~yAriQG~ 97 (146)
.-..|.||| +++-.-|+|.+++.|.+.++.++ +..... +.|.+.||..+..
T Consensus 21 ~~~~~~~L~-------sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g--~~l~~yf~~~~~~ 73 (184)
T PF04847_consen 21 PPVQFSPLK-------SFRRIRVVFESPESAQRARQLLHWDGTSFNG--KRLRVYFGQPTPI 73 (184)
T ss_dssp SS-EEEEET-------TTTEEEEE-SSTTHHHHHHHTST--TSEETT--EE-EEE----SS-
T ss_pred CceEEEEcC-------CCCEEEEEeCCHHHHHHHHHHhcccccccCC--CceEEEEcccccc
Confidence 456788886 57889999999999999999888 554444 8899999966654
No 95
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=62.58 E-value=16 Score=33.12 Aligned_cols=73 Identities=14% Similarity=0.165 Sum_probs=54.8
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
+-|||...++++|+..+.+.+.. ... |.+.+-|-+ ||.+-+.+.+.|....-..+++.+.
T Consensus 419 lsnip~svsee~lk~~f~~~g~~------------vka--fkff~kd~k------mal~q~~sveeA~~ali~~hnh~lg 478 (492)
T KOG1190|consen 419 LSNIPPSVSEEDLKNLFQEPGGQ------------VKA--FKFFQKDRK------MALPQLESVEEAIQALIDLHNHYLG 478 (492)
T ss_pred eccCCcccchhHHHHhhhcCCce------------EEe--eeecCCCcc------eeecccCChhHhhhhccccccccCC
Confidence 46999999999999999886421 233 444566654 9999999999999988888888776
Q ss_pred CCCcEEEEEeccCc
Q 040456 82 AQWLEFLTSACGDQ 95 (146)
Q Consensus 82 ~~~Kic~V~yAriQ 95 (146)
.. -...|++.+-+
T Consensus 479 en-~hlRvSFSks~ 491 (492)
T KOG1190|consen 479 EN-HHLRVSFSKST 491 (492)
T ss_pred CC-ceEEEEeeccc
Confidence 52 36778877543
No 96
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=59.03 E-value=13 Score=35.78 Aligned_cols=77 Identities=13% Similarity=0.066 Sum_probs=57.1
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
+-||+.+++..+|+..+..++. ....--+|-+.+-....-.--+||-|-+..+|.+|.+.++|...-
T Consensus 179 v~Nlnpsv~E~~ll~tfGrfgP-------------lasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~ 245 (877)
T KOG0151|consen 179 VGNLNPSVDENFLLRTFGRFGP-------------LASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVM 245 (877)
T ss_pred eecCCccccHHHHHHHhcccCc-------------ccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeee
Confidence 3599999999999999977643 234445565666555566667899999999999999999998755
Q ss_pred CCCcEEEEEecc
Q 040456 82 AQWLEFLTSACG 93 (146)
Q Consensus 82 ~~~Kic~V~yAr 93 (146)
. -...+.|++
T Consensus 246 ~--~e~K~gWgk 255 (877)
T KOG0151|consen 246 E--YEMKLGWGK 255 (877)
T ss_pred e--eeeeecccc
Confidence 5 344456653
No 97
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=56.61 E-value=46 Score=27.51 Aligned_cols=69 Identities=17% Similarity=0.277 Sum_probs=49.7
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceE-EEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFL-YLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRW 80 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFl-YLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w 80 (146)
+-|||..-+.++|..++..+ +.+.=+ .+| .-.|-|||-|.+...+....+.++|.+.
T Consensus 151 ~~niP~es~~e~l~~lf~qf----------------~g~keir~i~------~~~~iAfve~~~d~~a~~a~~~lq~~~i 208 (221)
T KOG4206|consen 151 LTNIPSESESEMLSDLFEQF----------------PGFKEIRLIP------PRSGIAFVEFLSDRQASAAQQALQGFKI 208 (221)
T ss_pred EecCCcchhHHHHHHHHhhC----------------cccceeEecc------CCCceeEEecchhhhhHHHhhhhcccee
Confidence 35899999999999988764 222222 222 1247899999999999999999999887
Q ss_pred cCCCcEEEEEecc
Q 040456 81 EAQWLEFLTSACG 93 (146)
Q Consensus 81 ~~~~Kic~V~yAr 93 (146)
.. .-...|++|+
T Consensus 209 t~-~~~m~i~~a~ 220 (221)
T KOG4206|consen 209 TK-KNTMQITFAK 220 (221)
T ss_pred cc-CceEEecccC
Confidence 75 2356666664
No 98
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=49.74 E-value=62 Score=29.78 Aligned_cols=53 Identities=13% Similarity=0.189 Sum_probs=40.4
Q ss_pred CCccceEEEceecc---CCcceeEEEEeccChHHHHHHHHHhcCCcccCCCcEEEEEe
Q 040456 37 RSEYDFLYLPMDFC---HGANLGYAFVNFTTSVAAVRFAKAFNKSRWEAQWLEFLTSA 91 (146)
Q Consensus 37 ~~~yDFlYLPiDf~---~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~~~Kic~V~y 91 (146)
.|...-+=.|.++. -....|=-||-|.+.+++.++..+++|.++.. -+...+|
T Consensus 433 ~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~n--RtVvtsY 488 (500)
T KOG0120|consen 433 FGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFAN--RTVVASY 488 (500)
T ss_pred cCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCC--cEEEEEe
Confidence 34555556676643 34578999999999999999999999999887 5544444
No 99
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=48.38 E-value=15 Score=30.09 Aligned_cols=62 Identities=21% Similarity=0.322 Sum_probs=47.5
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
++|++-++.+.+|.+.+... |+- -| ..++++.|||-|.+.+++.+.....+|....
T Consensus 104 ~~~~~~r~~~qdl~d~~~~~----------------g~~--~~------~~~~~~~~~v~Fs~~~da~ra~~~l~~~~~~ 159 (216)
T KOG0106|consen 104 VRNLSLRVSWQDLKDHFRPA----------------GEV--TY------VDARRNFAFVEFSEQEDAKRALEKLDGKKLN 159 (216)
T ss_pred eccchhhhhHHHHhhhhccc----------------CCC--ch------hhhhccccceeehhhhhhhhcchhccchhhc
Confidence 56888888899999887543 222 11 1238899999999999999999999999877
Q ss_pred CCCcEEEE
Q 040456 82 AQWLEFLT 89 (146)
Q Consensus 82 ~~~Kic~V 89 (146)
. +...+
T Consensus 160 ~--~~l~~ 165 (216)
T KOG0106|consen 160 G--RRISV 165 (216)
T ss_pred C--ceeee
Confidence 6 55555
No 100
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=47.91 E-value=22 Score=30.89 Aligned_cols=56 Identities=21% Similarity=0.327 Sum_probs=41.1
Q ss_pred cCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcccC
Q 040456 3 KNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWEA 82 (146)
Q Consensus 3 rNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~ 82 (146)
-||-.+-|-.+|...+.+.+.. -+-|- -.+||||-|.-.++|...++.++|..+..
T Consensus 84 gNis~tctn~ElRa~fe~ygpv-------------iecdi-----------vkdy~fvh~d~~eda~~air~l~~~~~~g 139 (346)
T KOG0109|consen 84 GNISPTCTNQELRAKFEKYGPV-------------IECDI-----------VKDYAFVHFDRAEDAVEAIRGLDNTEFQG 139 (346)
T ss_pred CCCCccccCHHHhhhhcccCCc-------------eeeee-----------ecceeEEEEeeccchHHHHhccccccccc
Confidence 4777777788888777654321 12222 36899999999999999998888877766
No 101
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=43.33 E-value=87 Score=27.86 Aligned_cols=92 Identities=22% Similarity=0.359 Sum_probs=49.4
Q ss_pred CccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceE-EEceeccCCcceeEEE--------EeccChHHHHHHHHHhcC
Q 040456 7 NRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFL-YLPMDFCHGANLGYAF--------VNFTTSVAAVRFAKAFNK 77 (146)
Q Consensus 7 nk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFl-YLPiDf~~~~N~GYAF--------VNf~~~~~a~~f~~~f~g 77 (146)
.+++++.|+++|+-.- ..||+ -..|| |-.-|-| ||.-+.+.+ ...|-.
T Consensus 242 ~RIs~etlk~vl~g~~----------------~~~f~kCiIID----CRFeYEY~GGHIinaVNi~s~~~l---~~~F~h 298 (427)
T COG5105 242 QRISVETLKQVLEGMY----------------NIDFLKCIIID----CRFEYEYRGGHIINAVNISSTKKL---GLLFRH 298 (427)
T ss_pred hhcCHHHHHHHHhchh----------------hhhhhceeEEe----ecceeeecCceeeeeeecchHHHH---HHHHHh
Confidence 3679999999997531 22222 12344 2222222 555555443 455555
Q ss_pred CcccCCC-cEEEEEeccCcChHHHHHHhccccccCCCCCcCceEEeC
Q 040456 78 SRWEAQW-LEFLTSACGDQGMDALKIHFQEKCFNCHTDSYLPVILAP 123 (146)
Q Consensus 78 ~~w~~~~-Kic~V~yAriQG~~al~~hf~ns~~~~~~~~y~P~~f~p 123 (146)
+....-. -|....+....|. .|..|++|.--+...+-| |++++|
T Consensus 299 kplThp~aLifHCEfSshRaP-~LA~HlRN~DR~~N~dhY-P~L~yP 343 (427)
T COG5105 299 KPLTHPRALIFHCEFSSHRAP-RLAQHLRNMDRMKNPDHY-PLLTYP 343 (427)
T ss_pred ccccCceeEEEEeecccccch-hHHHHHhhhhhhcCcccC-cccccc
Confidence 5443322 3444445555543 578999998766554444 565654
No 102
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=42.42 E-value=46 Score=30.60 Aligned_cols=54 Identities=19% Similarity=0.294 Sum_probs=40.6
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHH
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKA 74 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~ 74 (146)
+|-+|=.-|.++++++|.... +.. |+| --.++.+.|=|||-|++.+++.+..+.
T Consensus 15 ~rGLPwsat~~ei~~Ff~~~~-------------I~~---~~~---~r~~Gr~sGeA~Ve~~seedv~~Alkk 68 (510)
T KOG4211|consen 15 LRGLPWSATEKEILDFFSNCG-------------IEN---LEI---PRRNGRPSGEAYVEFTSEEDVEKALKK 68 (510)
T ss_pred ecCCCccccHHHHHHHHhcCc-------------eeE---EEE---eccCCCcCcceEEEeechHHHHHHHHh
Confidence 477898999999999997631 222 333 334688899999999999988776654
No 103
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=38.32 E-value=20 Score=21.25 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=13.6
Q ss_pred CCccCHHHHHHHHHhhch
Q 040456 6 PNRFKRHDLLQILDNHCW 23 (146)
Q Consensus 6 Pnk~t~~~L~~~ld~~c~ 23 (146)
|.++|-.+|+.+|+++.-
T Consensus 1 p~sltV~~Lk~iL~~~~I 18 (35)
T PF12949_consen 1 PKSLTVAQLKRILDEHGI 18 (35)
T ss_dssp STT--SHHHHHHHHHHT-
T ss_pred CCcCcHHHHHHHHHHcCC
Confidence 788999999999999853
No 104
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=34.80 E-value=1.4e+02 Score=20.09 Aligned_cols=67 Identities=12% Similarity=0.139 Sum_probs=50.2
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCcc-ceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEY-DFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRW 80 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~y-DFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w 80 (146)
.|+||.-+|.++|.+.-...|... .++ +--||..-+....++=||...=.|++++.+-.+.- |..+
T Consensus 5 er~~p~~it~e~l~~~~~~~~~~~------------~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~a-G~p~ 71 (77)
T PF14026_consen 5 ERDFPGGITAEDLAAAHAKSCAVQ------------AEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARRA-GLPA 71 (77)
T ss_pred EEeCCCCCCHHHHHHHHHHhHHHH------------hhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHHc-CCCc
Confidence 489999999999999877665432 344 44455555555667899999999999998888776 7766
Q ss_pred c
Q 040456 81 E 81 (146)
Q Consensus 81 ~ 81 (146)
+
T Consensus 72 d 72 (77)
T PF14026_consen 72 D 72 (77)
T ss_pred c
Confidence 5
No 105
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=34.05 E-value=92 Score=29.76 Aligned_cols=65 Identities=12% Similarity=0.129 Sum_probs=47.8
Q ss_pred HHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcccCCCcEEEEE
Q 040456 11 RHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWEAQWLEFLTS 90 (146)
Q Consensus 11 ~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~~~Kic~V~ 90 (146)
-.+|++||..+++.... -+..+-++.--.-|+||.+.+.+.|-+-+..+|...+-. ++..|.
T Consensus 419 AtDLKnlFSKyGKVvGA----------------KVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHG--rmISVE 480 (940)
T KOG4661|consen 419 ATDLKNLFSKYGKVVGA----------------KVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHG--RMISVE 480 (940)
T ss_pred hhHHHHHHHHhcceece----------------eeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcc--eeeeee
Confidence 35899999887543222 355566666777899999999999999888887766544 777777
Q ss_pred ecc
Q 040456 91 ACG 93 (146)
Q Consensus 91 yAr 93 (146)
-|+
T Consensus 481 kaK 483 (940)
T KOG4661|consen 481 KAK 483 (940)
T ss_pred ecc
Confidence 664
No 106
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=32.63 E-value=35 Score=31.22 Aligned_cols=69 Identities=20% Similarity=0.197 Sum_probs=49.4
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|-|+-...+..+|-.++...- ..+.=.|| .--||||||-.+..-|.+..+.++|+. +
T Consensus 6 ignL~p~~~psdl~svfg~ak-------------~~~~g~fl---------~k~gyafvd~pdq~wa~kaie~~sgk~-e 62 (584)
T KOG2193|consen 6 IGNLSPQVTPSDLESVFGDAK-------------IPGSGQFL---------VKSGYAFVDCPDQQWANKAIETLSGKV-E 62 (584)
T ss_pred ccccCCCCChHHHHHHhcccc-------------CCCCccee---------eecceeeccCCchhhhhhhHHhhchhh-h
Confidence 457777888899998886541 12333343 246999999999999999999999875 1
Q ss_pred CCCcEEEEEecc
Q 040456 82 AQWLEFLTSACG 93 (146)
Q Consensus 82 ~~~Kic~V~yAr 93 (146)
...|..+|.+.-
T Consensus 63 lqGkr~e~~~sv 74 (584)
T KOG2193|consen 63 LQGKRQEVEHSV 74 (584)
T ss_pred hcCceeeccchh
Confidence 222777887763
No 107
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=32.14 E-value=54 Score=23.50 Aligned_cols=71 Identities=15% Similarity=0.113 Sum_probs=39.0
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
+.|+|..-+...+..-|.+.+ +|- .|+.=.+ .-|-|.|-|.+++.|.+..+.++|--
T Consensus 7 V~NLP~~~d~~~I~~RL~qLs--dNC---------GGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEd-- 63 (90)
T PF11608_consen 7 VSNLPTNKDPSSIKNRLRQLS--DNC---------GGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGED-- 63 (90)
T ss_dssp EES--TTS-HHHHHHHHHHHH--HTT---------T--EEE------------TT-EEEEESSHHHHHHHHHHHTT----
T ss_pred EecCCCCCCHHHHHHHHHHHh--hcc---------CCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccc--
Confidence 578888777766655554432 221 3443222 13789999999999999999999864
Q ss_pred CCCcEEEEEeccCc
Q 040456 82 AQWLEFLTSACGDQ 95 (146)
Q Consensus 82 ~~~Kic~V~yAriQ 95 (146)
.+.-...|+|...+
T Consensus 64 VfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 64 VFGNKISVSFSPKN 77 (90)
T ss_dssp SSSS--EEESS--S
T ss_pred cccceEEEEEcCCc
Confidence 33334467777554
No 108
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=32.00 E-value=1.6e+02 Score=23.93 Aligned_cols=46 Identities=11% Similarity=0.082 Sum_probs=38.0
Q ss_pred ceeEEEEeccChHHHHHHHHHhcCCcccCCCc-EEEEEeccCcChHHHH
Q 040456 54 NLGYAFVNFTTSVAAVRFAKAFNKSRWEAQWL-EFLTSACGDQGMDALK 101 (146)
Q Consensus 54 N~GYAFVNf~~~~~a~~f~~~f~g~~w~~~~K-ic~V~yAriQG~~al~ 101 (146)
+++.-=|||.+++.|.+.....++..+.. | .|...+|..+-.+..-
T Consensus 50 sfrrvRi~f~~p~~a~~a~i~~~~~~f~~--~~~~k~yfaQ~~~~~~~~ 96 (193)
T KOG4019|consen 50 SFRRVRINFSNPEAAADARIKLHSTSFNG--KNELKLYFAQPGHPESNS 96 (193)
T ss_pred hhceeEEeccChhHHHHHHHHhhhcccCC--CceEEEEEccCCCccccc
Confidence 45666799999999999999999998777 7 8999999888766544
No 109
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=29.71 E-value=84 Score=26.45 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=29.8
Q ss_pred EEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcccC
Q 040456 43 LYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWEA 82 (146)
Q Consensus 43 lYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~ 82 (146)
+-+|-|-....- +|||||.+...+.-..+..||.++..
T Consensus 39 v~ip~~~d~~~k--Fa~v~f~~E~sv~~a~~L~ng~~l~~ 76 (267)
T KOG4454|consen 39 VGIPSGQDQEQK--FAYVFFPNENSVQLAGQLENGDDLEE 76 (267)
T ss_pred EeCCCCccCCCc--eeeeecccccchhhhhhhcccchhcc
Confidence 446766655555 99999999888888888899987765
No 110
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=28.29 E-value=1.6e+02 Score=24.98 Aligned_cols=61 Identities=16% Similarity=0.246 Sum_probs=43.9
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|-|+-...|++.|+++|... ..|.- |.+-- +-.+--||+.|.+.+.|-..+..++|..+.
T Consensus 215 ianl~~~~~ed~l~~~~~~~----------------~gf~~--l~~~~--~~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 215 IANLGPNCTEDELKQLLSRY----------------PGFHI--LKIRA--RGGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhccCCCCCHHHHHHHHHhC----------------CCceE--EEEec--CCCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 45788888999999999763 34444 44433 334456899999988888888888887765
Q ss_pred C
Q 040456 82 A 82 (146)
Q Consensus 82 ~ 82 (146)
.
T Consensus 275 ~ 275 (284)
T KOG1457|consen 275 S 275 (284)
T ss_pred c
Confidence 4
No 111
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=26.97 E-value=2.8e+02 Score=25.18 Aligned_cols=75 Identities=13% Similarity=0.115 Sum_probs=53.7
Q ss_pred CCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcccCC
Q 040456 4 NIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWEAQ 83 (146)
Q Consensus 4 NIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~~ 83 (146)
|-|-.+|++.|+.|.+++- ....+++-|=+. ..+..- +-+-|.+.++|....-..|.+..+.-
T Consensus 413 NaP~~vtEe~l~~i~nek~------------v~~~svkvFp~k---serSss--GllEfe~~s~Aveal~~~NH~pi~~p 475 (494)
T KOG1456|consen 413 NAPLGVTEEQLIGICNEKD------------VPPTSVKVFPLK---SERSSS--GLLEFENKSDAVEALMKLNHYPIEGP 475 (494)
T ss_pred cCCCccCHHHHHHHhhhcC------------CCcceEEeeccc---cccccc--ceeeeehHHHHHHHHHHhccccccCC
Confidence 7799999999999998862 124566655443 223333 45789999999999999998887764
Q ss_pred C----cEEEEEeccCc
Q 040456 84 W----LEFLTSACGDQ 95 (146)
Q Consensus 84 ~----Kic~V~yAriQ 95 (146)
. -++..+|+.-|
T Consensus 476 ~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 476 NGSFPFILKLCFSTSK 491 (494)
T ss_pred CCCCCeeeeeeecccc
Confidence 4 57777887655
No 112
>PF05573 NosL: NosL; InterPro: IPR008719 NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster. NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocentre assembly []. This entry also contains HTH-type transcriptional repressors, including YcnK. YcnK may act as a negative transcriptional regulator of YcnJ in the presence of copper and may use copper as a corepressor. The gene, ycnK, is significantly induced under copper-limiting conditions.; PDB: 2HQ3_A 2HPU_A.
Probab=25.50 E-value=70 Score=24.08 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=21.2
Q ss_pred CCcceeEEEEeccChHHHHHHHHHhcCCc
Q 040456 51 HGANLGYAFVNFTTSVAAVRFAKAFNKSR 79 (146)
Q Consensus 51 ~~~N~GYAFVNf~~~~~a~~f~~~f~g~~ 79 (146)
-..-+|+..|=|.+.++|.+|.+.+-|.-
T Consensus 110 ~~~pMg~~~~aF~~~~~A~~F~~~~GG~v 138 (149)
T PF05573_consen 110 VRGPMGPDLIAFASKEDAEAFAKEHGGKV 138 (149)
T ss_dssp SS-TTS--EEEES-HHHHHHHHHHTEEEE
T ss_pred cCCCCCCcccccCCHHHHHHHHHHcCCEE
Confidence 34567899999999999999999996654
No 113
>COG4154 FucU Fucose dissimilation pathway protein FucU [Carbohydrate transport and metabolism]
Probab=25.29 E-value=57 Score=25.18 Aligned_cols=20 Identities=25% Similarity=0.238 Sum_probs=15.2
Q ss_pred CCcCCCCccCHHHHHHHHHhh
Q 040456 1 MIKNIPNRFKRHDLLQILDNH 21 (146)
Q Consensus 1 MirNIPnk~t~~~L~~~ld~~ 21 (146)
|+||||.-++.+-|. .|-+.
T Consensus 1 MLK~I~p~LspdlL~-tLr~M 20 (144)
T COG4154 1 MLKGISPLLSPDLLK-TLREM 20 (144)
T ss_pred CCCCCCcccCHHHHH-HHHHh
Confidence 999999999986555 45443
No 114
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=24.67 E-value=1.3e+02 Score=23.80 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=29.8
Q ss_pred ceeccCCcceeEEEEeccChHHHHHHHHHhcCCc
Q 040456 46 PMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSR 79 (146)
Q Consensus 46 PiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~ 79 (146)
||+..|-|..-=|-|=|.+...|..+..+|+...
T Consensus 116 pI~SVT~cGrqsavVvF~d~~SAC~Av~Af~s~~ 149 (166)
T PF15023_consen 116 PIQSVTLCGRQSAVVVFKDITSACKAVSAFQSRA 149 (166)
T ss_pred CcceeeecCCceEEEEehhhHHHHHHHHhhcCCC
Confidence 6666688999999999999999999999998743
No 115
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=22.39 E-value=73 Score=26.95 Aligned_cols=36 Identities=14% Similarity=0.193 Sum_probs=29.6
Q ss_pred ceeEEEEeccChHHHHHHHHHhcCCcccCCCcEEEE
Q 040456 54 NLGYAFVNFTTSVAAVRFAKAFNKSRWEAQWLEFLT 89 (146)
Q Consensus 54 N~GYAFVNf~~~~~a~~f~~~f~g~~w~~~~Kic~V 89 (146)
=+|=+||-|...++|....+.+||.++..-+-.|++
T Consensus 109 l~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~ 144 (260)
T KOG2202|consen 109 LVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAEL 144 (260)
T ss_pred hhhhhhhhcccHHHHHHHHHHHcCccccCCcceeee
Confidence 478899999999999999999999988775433433
No 116
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=21.05 E-value=2.9e+02 Score=24.59 Aligned_cols=42 Identities=10% Similarity=0.109 Sum_probs=33.6
Q ss_pred CCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcccC
Q 040456 37 RSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWEA 82 (146)
Q Consensus 37 ~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~ 82 (146)
.|.++-|-| . -+-+-|=+=|+|.+++.|..-++.++|..+..
T Consensus 300 ~G~v~~vvv-~---d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdg 341 (382)
T KOG1548|consen 300 FGQVRKVVV-Y---DRHPDGVVTVSFRNNEEADQCIQTMDGRWFDG 341 (382)
T ss_pred hCCcceEEE-e---ccCCCceeEEEeCChHHHHHHHHHhcCeeecc
Confidence 567776633 2 24567899999999999999999999987765
No 117
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=20.98 E-value=31 Score=33.68 Aligned_cols=63 Identities=13% Similarity=0.021 Sum_probs=38.3
Q ss_pred CccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcccCCCcEEEEEeccCcChHHHHH
Q 040456 38 SEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWEAQWLEFLTSACGDQGMDALKI 102 (146)
Q Consensus 38 ~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~~~Kic~V~yAriQG~~al~~ 102 (146)
+..+++-+.+--.++.=+||||+=|..++.+.+.+..-.+.-... +..-|+=-..||..+-.+
T Consensus 692 ~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK--~~v~i~g~pf~gt~e~~k 754 (881)
T KOG0128|consen 692 GTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGK--ISVAISGPPFQGTKEELK 754 (881)
T ss_pred chhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhh--hhhheeCCCCCCchHHHH
Confidence 444444444444456667999999999887776654433333221 455566678999555333
No 118
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=20.13 E-value=58 Score=23.17 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=15.8
Q ss_pred EeccChHHHHHHHHHhcC
Q 040456 60 VNFTTSVAAVRFAKAFNK 77 (146)
Q Consensus 60 VNf~~~~~a~~f~~~f~g 77 (146)
+||.+.++|..|.+.+..
T Consensus 92 LnF~se~eA~~F~~~v~~ 109 (111)
T PF00568_consen 92 LNFASEEEADQFYKKVQE 109 (111)
T ss_dssp EEESSHHHHHHHHHHHHH
T ss_pred EecCCHHHHHHHHHHHhc
Confidence 799999999999988753
Done!