Query 040456
Match_columns 146
No_of_seqs 121 out of 241
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 13:45:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040456.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040456hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.5 1.3E-13 4.5E-18 96.2 8.6 75 2-94 24-98 (99)
2 2lkz_A RNA-binding protein 5; 99.4 3.2E-13 1.1E-17 94.4 5.5 79 1-93 13-93 (95)
3 3mdf_A Peptidyl-prolyl CIS-tra 99.4 1.8E-12 6.3E-17 86.0 7.3 74 2-93 12-85 (85)
4 3md1_A Nuclear and cytoplasmic 99.3 4.4E-12 1.5E-16 83.8 8.2 76 2-95 6-81 (83)
5 3bs9_A Nucleolysin TIA-1 isofo 99.3 4.7E-12 1.6E-16 84.4 8.1 76 2-95 11-86 (87)
6 1p1t_A Cleavage stimulation fa 99.3 1.4E-11 4.7E-16 84.8 10.5 83 2-102 13-95 (104)
7 2div_A TRNA selenocysteine ass 99.3 4.3E-12 1.5E-16 86.8 7.6 80 2-97 14-96 (99)
8 2e5h_A Zinc finger CCHC-type a 99.3 2.6E-12 8.9E-17 87.0 6.4 74 2-93 21-94 (94)
9 2cqc_A Arginine/serine-rich sp 99.3 9.7E-12 3.3E-16 84.1 8.5 74 2-93 20-93 (95)
10 1p27_B RNA-binding protein 8A; 99.3 7.7E-12 2.6E-16 86.5 8.1 77 2-96 28-104 (106)
11 1whw_A Hypothetical protein ri 99.3 7.6E-12 2.6E-16 85.6 8.0 78 2-97 13-90 (99)
12 2lxi_A RNA-binding protein 10; 99.3 2.3E-12 7.9E-17 88.3 5.3 79 1-96 5-84 (91)
13 2dnz_A Probable RNA-binding pr 99.3 7.4E-12 2.5E-16 84.8 7.8 77 2-96 10-86 (95)
14 2x1f_A MRNA 3'-END-processing 99.3 8.7E-12 3E-16 85.1 8.2 80 2-99 7-86 (96)
15 2cpz_A CUG triplet repeat RNA- 99.3 1.1E-11 3.6E-16 87.3 8.6 77 2-96 30-106 (115)
16 2cqb_A Peptidyl-prolyl CIS-tra 99.3 8.4E-12 2.9E-16 85.8 7.4 77 2-96 17-93 (102)
17 1x5s_A Cold-inducible RNA-bind 99.3 1.3E-11 4.5E-16 84.8 8.2 77 2-96 17-93 (102)
18 3p5t_L Cleavage and polyadenyl 99.3 9.2E-12 3.1E-16 84.4 7.2 77 2-96 6-84 (90)
19 1x5t_A Splicing factor 3B subu 99.3 1E-11 3.5E-16 84.3 7.0 77 2-96 10-87 (96)
20 2dnm_A SRP46 splicing factor; 99.3 8.8E-12 3E-16 86.0 6.6 78 2-97 18-95 (103)
21 2la6_A RNA-binding protein FUS 99.3 2.1E-11 7.3E-16 83.6 8.5 74 2-93 18-99 (99)
22 1oo0_B CG8781-PA, drosophila Y 99.3 1.5E-11 5.2E-16 85.7 7.4 78 2-97 31-108 (110)
23 2do4_A Squamous cell carcinoma 99.3 3.2E-11 1.1E-15 82.7 8.8 76 2-96 22-97 (100)
24 3s8s_A Histone-lysine N-methyl 99.2 2.2E-11 7.4E-16 86.6 8.1 76 2-95 11-86 (110)
25 2cq0_A Eukaryotic translation 99.2 1.1E-11 3.9E-16 85.4 6.4 77 2-96 20-96 (103)
26 2jrs_A RNA-binding protein 39; 99.2 2.5E-11 8.5E-16 85.5 8.2 76 2-95 31-106 (108)
27 2dgo_A Cytotoxic granule-assoc 99.2 2.6E-11 8.8E-16 85.1 8.1 77 2-96 20-96 (115)
28 2d9p_A Polyadenylate-binding p 99.2 1.9E-11 6.4E-16 84.3 7.2 75 2-96 20-94 (103)
29 4a8x_A RNA-binding protein wit 99.2 2E-11 6.8E-16 81.3 7.0 76 2-95 9-85 (88)
30 1x5u_A Splicing factor 3B subu 99.2 2E-11 7E-16 84.2 7.3 77 2-96 20-96 (105)
31 2dgp_A Bruno-like 4, RNA bindi 99.2 3.1E-11 1.1E-15 83.4 8.2 79 2-96 18-97 (106)
32 2ywk_A Putative RNA-binding pr 99.2 2.7E-11 9.4E-16 82.0 7.7 73 2-93 21-93 (95)
33 3ex7_B RNA-binding protein 8A; 99.2 2.1E-11 7.3E-16 86.8 7.4 78 2-97 27-104 (126)
34 3ulh_A THO complex subunit 4; 99.2 3.7E-11 1.3E-15 83.1 8.4 73 2-93 34-106 (107)
35 2cph_A RNA binding motif prote 99.2 3.3E-11 1.1E-15 83.2 7.8 77 2-96 20-98 (107)
36 2cpf_A RNA binding motif prote 99.2 3.3E-11 1.1E-15 82.2 7.6 77 2-96 10-89 (98)
37 2mss_A Protein (musashi1); RNA 99.2 1.9E-11 6.6E-16 79.6 6.0 72 2-92 4-75 (75)
38 2khc_A Testis-specific RNP-typ 99.2 1.4E-11 4.8E-16 86.8 5.6 74 2-93 45-118 (118)
39 2dgs_A DAZ-associated protein 99.2 4.1E-11 1.4E-15 82.0 7.5 76 2-96 15-90 (99)
40 3ucg_A Polyadenylate-binding p 99.2 3.3E-11 1.1E-15 80.5 6.8 74 2-94 11-84 (89)
41 2cpe_A RNA-binding protein EWS 99.2 3.8E-11 1.3E-15 84.0 7.4 78 2-97 20-105 (113)
42 1x4h_A RNA-binding protein 28; 99.2 5.9E-11 2E-15 82.5 8.3 77 2-96 20-102 (111)
43 2dh8_A DAZ-associated protein 99.2 4.2E-11 1.4E-15 82.8 7.3 76 2-96 21-96 (105)
44 1u6f_A Tcubp1, RNA-binding pro 99.2 6.9E-11 2.3E-15 85.5 8.7 76 2-95 47-122 (139)
45 2dgv_A HnRNP M, heterogeneous 99.2 6.2E-11 2.1E-15 79.8 7.7 75 2-96 13-87 (92)
46 2cqp_A RNA-binding protein 12; 99.2 2.7E-11 9.3E-16 82.6 5.9 75 2-94 20-94 (98)
47 2fc8_A NCL protein; structure 99.2 5.6E-11 1.9E-15 81.6 7.6 74 2-96 20-93 (102)
48 1h2v_Z 20 kDa nuclear CAP bind 99.2 5.4E-11 1.8E-15 87.9 8.0 77 2-96 44-120 (156)
49 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.2 3.2E-11 1.1E-15 86.6 6.5 73 2-92 68-140 (140)
50 2kn4_A Immunoglobulin G-bindin 99.2 5.6E-11 1.9E-15 87.5 7.9 77 2-96 75-151 (158)
51 1x5o_A RNA binding motif, sing 99.2 5.6E-11 1.9E-15 83.3 7.5 77 2-95 30-112 (114)
52 2dnh_A Bruno-like 5, RNA bindi 99.2 9.6E-11 3.3E-15 80.8 8.5 78 2-96 20-98 (105)
53 2fy1_A RNA-binding motif prote 99.2 6.7E-11 2.3E-15 84.3 7.9 76 2-96 12-87 (116)
54 3md3_A Nuclear and cytoplasmic 99.2 8.5E-11 2.9E-15 84.9 8.0 74 2-93 92-165 (166)
55 3ns6_A Eukaryotic translation 99.2 5.3E-11 1.8E-15 82.5 6.6 75 2-93 11-91 (100)
56 4f25_A Polyadenylate-binding p 99.2 8.7E-11 3E-15 83.3 7.8 75 2-96 10-84 (115)
57 2kxn_B Transformer-2 protein h 99.2 5.7E-11 2E-15 86.5 7.0 76 2-95 51-126 (129)
58 2hvz_A Splicing factor, argini 99.2 1.4E-10 4.6E-15 79.7 8.5 72 2-96 5-76 (101)
59 2kt5_A RNA and export factor-b 99.2 1.4E-10 4.7E-15 82.7 8.7 75 2-95 40-114 (124)
60 2ek1_A RNA-binding protein 12; 99.2 5.5E-11 1.9E-15 80.5 6.1 74 2-93 20-93 (95)
61 2ki2_A SS-DNA binding protein 99.1 2.4E-11 8.2E-16 81.7 4.1 76 2-96 6-81 (90)
62 2cqi_A Nucleolysin TIAR; RNA r 99.1 1.6E-10 5.5E-15 79.5 8.4 75 2-96 20-94 (103)
63 1rk8_A CG8781-PA, CG8781-PA pr 99.1 1.1E-10 3.7E-15 87.4 8.1 79 2-98 77-155 (165)
64 2cq3_A RNA-binding protein 9; 99.1 1.1E-10 3.8E-15 80.4 7.5 75 2-96 20-94 (103)
65 2dgw_A Probable RNA-binding pr 99.1 1.6E-10 5.4E-15 77.9 8.1 74 2-96 15-88 (91)
66 2cqd_A RNA-binding region cont 99.1 6.7E-11 2.3E-15 83.2 6.4 76 2-96 22-97 (116)
67 1iqt_A AUF1, heterogeneous nuc 99.1 5.4E-11 1.8E-15 77.3 5.3 72 2-92 4-75 (75)
68 3s7r_A Heterogeneous nuclear r 99.1 1.4E-10 4.6E-15 77.5 7.3 72 2-92 16-87 (87)
69 2dhg_A TRNA selenocysteine ass 99.1 8.8E-11 3E-15 80.9 6.5 76 2-95 14-90 (104)
70 1x4e_A RNA binding motif, sing 99.1 1.1E-11 3.8E-16 82.5 1.8 72 2-91 10-81 (85)
71 1fxl_A Paraneoplastic encephal 99.1 2E-10 6.8E-15 83.0 8.5 75 2-92 93-167 (167)
72 3n9u_C Cleavage and polyadenyl 99.1 1.5E-10 5E-15 87.1 8.1 80 2-99 60-141 (156)
73 2cpx_A Hypothetical protein FL 99.1 4.3E-11 1.5E-15 83.8 4.8 77 2-96 30-106 (115)
74 2do0_A HnRNP M, heterogeneous 99.1 2.1E-10 7.1E-15 80.2 8.2 76 2-96 20-95 (114)
75 2fc9_A NCL protein; structure 99.1 1.5E-10 5E-15 79.5 7.2 74 2-97 20-93 (101)
76 2dng_A Eukaryotic translation 99.1 1.3E-10 4.6E-15 80.1 6.8 75 2-96 20-94 (103)
77 2lea_A Serine/arginine-rich sp 99.1 5.4E-11 1.9E-15 87.1 5.0 78 2-97 52-129 (135)
78 1fxl_A Paraneoplastic encephal 99.1 3E-10 1E-14 82.1 8.9 78 1-96 6-83 (167)
79 1b7f_A Protein (SXL-lethal pro 99.1 2.1E-10 7.2E-15 83.4 8.0 77 2-96 8-84 (168)
80 1uaw_A Mouse-musashi-1; RNP-ty 99.1 8.3E-11 2.9E-15 76.6 5.2 72 2-92 5-76 (77)
81 1wi8_A EIF-4B, eukaryotic tran 99.1 1.1E-10 3.6E-15 80.8 6.0 75 2-96 20-95 (104)
82 2dis_A Unnamed protein product 99.1 1.5E-10 5.1E-15 80.3 6.8 77 2-96 13-93 (109)
83 1x4b_A Heterogeneous nuclear r 99.1 1.4E-10 4.8E-15 81.6 6.7 76 2-96 32-107 (116)
84 2g4b_A Splicing factor U2AF 65 99.1 2.2E-10 7.6E-15 83.7 7.9 74 2-93 99-172 (172)
85 2dgx_A KIAA0430 protein; RRM d 99.1 2.5E-10 8.6E-15 78.2 7.7 74 2-96 14-91 (96)
86 1b7f_A Protein (SXL-lethal pro 99.1 3.2E-10 1.1E-14 82.4 8.1 75 2-92 94-168 (168)
87 2m2b_A RNA-binding protein 10; 99.1 6.6E-11 2.3E-15 85.5 4.2 75 2-95 28-108 (131)
88 2jwn_A Embryonic polyadenylate 99.1 2.7E-10 9.1E-15 80.9 7.2 75 2-95 41-115 (124)
89 2cqg_A TDP-43, TAR DNA-binding 99.1 4.6E-10 1.6E-14 77.2 8.2 75 2-96 20-94 (103)
90 2cq4_A RNA binding motif prote 99.1 2.1E-10 7.3E-15 80.4 6.5 76 2-96 30-105 (114)
91 2qfj_A FBP-interacting repress 99.1 3.7E-10 1.3E-14 85.3 8.1 76 2-95 130-205 (216)
92 2err_A Ataxin-2-binding protei 99.1 2.8E-10 9.4E-15 80.0 6.8 74 2-95 34-107 (109)
93 1x4a_A Splicing factor, argini 99.1 3.1E-10 1.1E-14 79.0 6.8 74 2-96 27-100 (109)
94 2dha_A FLJ20171 protein; RRM d 99.1 3.7E-10 1.3E-14 82.4 7.2 91 2-108 28-118 (123)
95 1why_A Hypothetical protein ri 99.0 5.8E-10 2E-14 76.1 7.3 73 2-96 22-94 (97)
96 1nu4_A U1A RNA binding domain; 99.0 2.2E-10 7.6E-15 77.7 5.0 76 2-98 13-92 (97)
97 2cpy_A RNA-binding protein 12; 99.0 2.4E-10 8.4E-15 80.7 5.1 75 2-96 20-95 (114)
98 2yh0_A Splicing factor U2AF 65 99.0 6.6E-10 2.3E-14 82.9 7.7 78 2-97 119-196 (198)
99 2db1_A Heterogeneous nuclear r 99.0 4.9E-10 1.7E-14 79.9 6.6 86 2-104 22-107 (118)
100 1x4g_A Nucleolysin TIAR; struc 99.0 6.2E-10 2.1E-14 77.6 6.9 71 2-96 30-100 (109)
101 1fj7_A Nucleolin RBD1, protein 99.0 1.4E-10 4.7E-15 79.6 3.5 75 2-96 22-96 (101)
102 2cpj_A Non-POU domain-containi 99.0 4.9E-10 1.7E-14 76.7 6.1 71 2-96 20-90 (99)
103 2cpi_A CCR4-NOT transcription 99.0 2.8E-10 9.6E-15 80.0 5.0 77 2-96 20-102 (111)
104 1wel_A RNA-binding protein 12; 99.0 1.9E-10 6.5E-15 82.2 4.1 83 2-103 30-112 (124)
105 2dnq_A RNA-binding protein 4B; 99.0 8.3E-10 2.8E-14 74.3 6.9 70 2-97 13-82 (90)
106 1s79_A Lupus LA protein; RRM, 99.0 5.6E-10 1.9E-14 78.5 6.1 72 2-93 16-87 (103)
107 2lcw_A RNA-binding protein FUS 98.6 3.9E-11 1.3E-15 84.6 0.0 85 2-96 12-96 (116)
108 2f3j_A RNA and export factor b 99.0 9.2E-10 3.1E-14 84.2 7.7 76 2-96 93-168 (177)
109 1fjc_A Nucleolin RBD2, protein 99.0 5.1E-10 1.7E-14 75.9 5.5 73 2-97 21-93 (96)
110 2la4_A Nuclear and cytoplasmic 99.0 5.9E-10 2E-14 76.4 5.9 69 2-94 32-100 (101)
111 2jvo_A Nucleolar protein 3; nu 99.0 1E-09 3.5E-14 77.3 7.2 70 2-97 36-105 (108)
112 2e5j_A Methenyltetrahydrofolat 99.0 1.1E-09 3.8E-14 74.8 7.0 72 2-96 24-95 (97)
113 3nmr_A Cugbp ELAV-like family 99.0 2E-09 6.9E-14 78.4 8.7 78 2-95 8-88 (175)
114 2cqh_A IGF-II mRNA-binding pro 99.0 9.5E-10 3.3E-14 74.3 6.5 70 2-96 13-84 (93)
115 3nmr_A Cugbp ELAV-like family 99.0 1.8E-09 6.2E-14 78.7 8.5 74 2-92 100-174 (175)
116 3q2s_C Cleavage and polyadenyl 99.0 7.3E-10 2.5E-14 87.9 6.8 80 2-99 73-154 (229)
117 3lqv_A PRE-mRNA branch site pr 99.0 1.1E-09 3.8E-14 76.7 7.0 72 2-94 13-84 (115)
118 2cpd_A Apobec-1 stimulating pr 99.0 1.5E-09 5.1E-14 74.3 7.4 72 2-97 20-91 (99)
119 2cjk_A Nuclear polyadenylated 99.0 9E-10 3.1E-14 80.1 6.6 74 2-94 92-165 (167)
120 2nlw_A Eukaryotic translation 99.0 7.7E-10 2.6E-14 77.0 6.0 72 2-93 20-98 (105)
121 2hgl_A HNRPF protein, heteroge 99.0 6.7E-10 2.3E-14 82.3 5.9 76 2-97 49-127 (136)
122 2rs2_A Musashi-1, RNA-binding 99.0 9.3E-10 3.2E-14 77.4 6.2 76 2-96 30-105 (109)
123 1l3k_A Heterogeneous nuclear r 99.0 1.2E-09 4.3E-14 81.3 7.2 76 2-96 109-184 (196)
124 2qfj_A FBP-interacting repress 99.0 1.3E-09 4.5E-14 82.3 7.4 77 2-96 33-109 (216)
125 2j76_E EIF-4B, EIF4B, eukaryot 99.0 2.5E-10 8.7E-15 78.7 3.0 73 2-94 24-97 (100)
126 2dgu_A Heterogeneous nuclear r 99.0 2E-09 6.8E-14 74.3 7.5 70 2-97 16-85 (103)
127 2ytc_A PRE-mRNA-splicing facto 99.0 9.9E-10 3.4E-14 72.8 5.7 68 2-93 17-85 (85)
128 1wg5_A Heterogeneous nuclear r 99.0 8.8E-10 3E-14 76.6 5.5 75 2-96 20-95 (104)
129 4f02_A Polyadenylate-binding p 98.9 2.8E-09 9.7E-14 82.1 8.9 78 2-97 20-97 (213)
130 3egn_A RNA-binding protein 40; 98.9 5.2E-10 1.8E-14 81.5 4.3 77 2-96 50-131 (143)
131 1whx_A Hypothetical protein ri 98.9 1.4E-09 5E-14 76.7 6.5 69 2-94 15-83 (111)
132 1x4c_A Splicing factor, argini 98.9 1.9E-09 6.6E-14 75.2 6.7 71 2-95 20-93 (108)
133 2i2y_A Fusion protein consists 98.9 2.1E-09 7.3E-14 78.7 7.0 72 2-96 78-149 (150)
134 2dgt_A RNA-binding protein 30; 98.9 5.2E-09 1.8E-13 70.6 8.1 69 2-96 15-83 (92)
135 2xnq_A Nuclear polyadenylated 98.9 3.4E-09 1.2E-13 73.0 7.3 69 2-96 27-96 (97)
136 2lmi_A GRSF-1, G-rich sequence 98.9 6.7E-10 2.3E-14 77.6 3.7 84 2-102 16-99 (107)
137 2xs2_A Deleted in azoospermia- 98.9 1.4E-09 4.6E-14 74.7 5.1 72 2-94 14-85 (102)
138 1wg1_A KIAA1579 protein, homol 98.9 2.1E-09 7E-14 72.4 5.9 69 2-95 10-78 (88)
139 1sjq_A Polypyrimidine tract-bi 98.9 1.8E-09 6.1E-14 77.4 5.7 73 2-98 21-95 (105)
140 2jvr_A Nucleolar protein 3; RN 98.9 3.3E-09 1.1E-13 76.0 7.0 71 2-94 33-104 (111)
141 1l3k_A Heterogeneous nuclear r 98.9 3.6E-09 1.2E-13 78.8 7.5 75 2-95 18-92 (196)
142 4f02_A Polyadenylate-binding p 98.9 4.5E-09 1.5E-13 81.0 7.9 74 2-95 108-181 (213)
143 1uw4_A UPF3X; nonsense mediate 98.9 3.9E-09 1.3E-13 74.3 6.9 80 1-96 5-89 (91)
144 2a3j_A U1 small nuclear ribonu 98.9 5E-09 1.7E-13 76.6 7.3 79 2-97 34-112 (127)
145 2cq1_A PTB-like protein L; RRM 98.9 2.1E-09 7.2E-14 75.7 5.1 72 2-97 20-93 (101)
146 3md3_A Nuclear and cytoplasmic 98.9 4.5E-09 1.5E-13 75.8 6.9 75 2-95 5-79 (166)
147 2krb_A Eukaryotic translation 98.9 1.7E-09 5.8E-14 71.6 3.9 63 2-82 6-74 (81)
148 1wex_A Hypothetical protein (r 98.9 4.6E-09 1.6E-13 74.2 6.3 73 2-96 20-92 (104)
149 1wf1_A RNA-binding protein RAL 98.9 4.7E-09 1.6E-13 73.2 6.3 68 2-95 32-100 (110)
150 1wez_A HnRNP H', FTP-3, hetero 98.8 4E-09 1.4E-13 73.6 5.8 73 2-95 20-92 (102)
151 2kvi_A Nuclear polyadenylated 98.8 5.3E-09 1.8E-13 71.4 6.1 70 2-97 15-85 (96)
152 3d2w_A TAR DNA-binding protein 98.8 6.9E-09 2.3E-13 70.6 6.4 70 2-96 16-85 (89)
153 2cq2_A Hypothetical protein LO 98.8 5.2E-09 1.8E-13 76.0 5.9 68 4-93 34-104 (114)
154 2ad9_A Polypyrimidine tract-bi 98.8 5.7E-09 1.9E-13 76.1 6.1 72 2-97 36-109 (119)
155 2dnn_A RNA-binding protein 12; 98.8 8.9E-09 3E-13 73.4 6.9 72 2-94 21-92 (109)
156 2dnp_A RNA-binding protein 14; 98.8 1.3E-08 4.3E-13 68.4 7.3 69 2-96 14-82 (90)
157 3beg_B Splicing factor, argini 98.8 1.6E-09 5.4E-14 76.8 2.9 59 2-83 21-79 (115)
158 3pgw_S U1-70K; protein-RNA com 98.8 9.9E-09 3.4E-13 88.6 8.3 77 2-96 107-183 (437)
159 2wbr_A GW182, gawky, LD47780P; 98.8 8.1E-09 2.8E-13 72.5 6.1 67 2-92 12-78 (89)
160 3r27_A HnRNP L, heterogeneous 98.8 1.3E-08 4.3E-13 72.4 7.0 72 2-95 26-97 (100)
161 3smz_A Protein raver-1, ribonu 98.8 1.4E-08 4.9E-13 80.4 8.1 76 2-95 100-175 (284)
162 2l08_A Regulator of nonsense t 98.8 2.5E-09 8.4E-14 76.3 3.3 79 1-95 13-96 (97)
163 1fje_B Nucleolin RBD12, protei 98.8 8.1E-09 2.8E-13 75.8 6.1 70 2-94 104-173 (175)
164 3smz_A Protein raver-1, ribonu 98.8 1.4E-08 4.8E-13 80.5 7.8 76 2-96 189-265 (284)
165 2dnl_A Cytoplasmic polyadenyla 98.8 1.4E-08 4.6E-13 71.6 6.4 57 2-75 13-72 (114)
166 2ghp_A U4/U6 snRNA-associated 98.7 9.1E-09 3.1E-13 81.8 5.7 74 2-94 215-290 (292)
167 2e44_A Insulin-like growth fac 98.7 2.2E-08 7.6E-13 67.7 6.7 72 2-95 20-92 (96)
168 2cjk_A Nuclear polyadenylated 98.7 1.1E-08 3.9E-13 74.2 5.6 57 2-74 8-64 (167)
169 1x4d_A Matrin 3; structural ge 98.7 7.3E-09 2.5E-13 73.3 4.0 69 2-94 20-91 (102)
170 1fje_B Nucleolin RBD12, protei 98.7 5.8E-09 2E-13 76.7 3.5 74 2-95 18-91 (175)
171 1wf0_A TDP-43, TAR DNA-binding 98.7 1.5E-08 5.1E-13 67.8 5.0 70 2-96 10-79 (88)
172 3pgw_A U1-A; protein-RNA compl 98.7 6.2E-08 2.1E-12 76.6 8.5 78 2-96 14-91 (282)
173 2ghp_A U4/U6 snRNA-associated 98.7 5.4E-08 1.8E-12 77.3 7.6 77 2-97 122-199 (292)
174 2hgn_A Heterogeneous nuclear r 98.7 1.2E-08 4.2E-13 75.8 3.5 73 2-95 51-123 (139)
175 3sde_A Paraspeckle component 1 98.7 5.7E-08 2E-12 77.0 7.5 77 2-95 101-179 (261)
176 2hzc_A Splicing factor U2AF 65 98.6 4.2E-08 1.4E-12 64.9 5.3 75 2-90 11-85 (87)
177 1x4f_A Matrin 3; structural ge 98.6 2.4E-08 8.3E-13 72.0 4.3 71 2-94 30-101 (112)
178 1x5p_A Negative elongation fac 98.6 7.3E-08 2.5E-12 65.6 6.5 69 2-96 20-88 (97)
179 1qm9_A Polypyrimidine tract-bi 98.6 4.9E-08 1.7E-12 73.3 6.1 72 2-96 8-80 (198)
180 3pgw_A U1-A; protein-RNA compl 98.6 8.9E-08 3E-12 75.7 7.9 69 2-93 212-281 (282)
181 2adc_A Polypyrimidine tract-bi 98.6 7.1E-08 2.4E-12 75.0 7.1 71 2-95 39-110 (229)
182 1qm9_A Polypyrimidine tract-bi 98.6 7.1E-08 2.4E-12 72.4 6.7 71 2-95 125-197 (198)
183 2adc_A Polypyrimidine tract-bi 98.6 8E-08 2.7E-12 74.7 6.8 70 2-95 156-228 (229)
184 2hgm_A HNRPF protein, heteroge 98.6 2.5E-08 8.6E-13 73.1 3.7 71 2-93 47-119 (126)
185 1sjr_A Polypyrimidine tract-bi 98.6 2E-07 6.9E-12 71.6 8.8 75 2-96 51-125 (164)
186 3tyt_A Heterogeneous nuclear r 98.6 8.6E-08 2.9E-12 74.4 6.3 72 2-96 9-81 (205)
187 2pe8_A Splicing factor 45; RRM 98.6 2.4E-07 8.2E-12 65.4 7.7 75 2-94 13-93 (105)
188 2e5g_A U6 snRNA-specific termi 98.5 7.1E-08 2.4E-12 65.3 4.5 68 2-93 13-80 (94)
189 2voo_A Lupus LA protein; RNA-b 98.5 1.6E-07 5.5E-12 72.5 6.9 72 2-93 114-185 (193)
190 1jmt_A Splicing factor U2AF 35 98.5 1.4E-07 4.7E-12 66.3 4.7 53 37-92 51-103 (104)
191 2bz2_A Negative elongation fac 98.5 3.4E-07 1.2E-11 65.7 6.7 70 2-97 44-113 (121)
192 3zzy_A Polypyrimidine tract-bi 98.4 7E-07 2.4E-11 66.1 7.9 74 2-96 33-107 (130)
193 3u1l_A PRE-mRNA-splicing facto 98.4 3.2E-07 1.1E-11 74.1 6.6 72 2-95 139-229 (240)
194 2yh0_A Splicing factor U2AF 65 98.4 7.7E-08 2.6E-12 71.6 2.2 80 2-95 9-88 (198)
195 2g4b_A Splicing factor U2AF 65 98.4 3.9E-07 1.3E-11 66.3 5.8 79 2-95 9-88 (172)
196 2e5i_A Heterogeneous nuclear r 98.4 1.5E-06 5.1E-11 63.5 8.5 73 2-96 30-103 (124)
197 3sde_A Paraspeckle component 1 98.4 5.6E-07 1.9E-11 71.3 6.1 68 2-93 27-94 (261)
198 2dit_A HIV TAT specific factor 98.3 7.9E-07 2.7E-11 62.3 6.1 52 37-94 50-101 (112)
199 3tyt_A Heterogeneous nuclear r 98.3 1.3E-06 4.3E-11 67.8 6.8 65 2-84 128-194 (205)
200 3ue2_A Poly(U)-binding-splicin 98.3 1.6E-06 5.6E-11 62.5 6.8 56 37-94 49-108 (118)
201 2d9o_A DNAJ (HSP40) homolog, s 98.3 1.9E-06 6.6E-11 60.5 6.9 66 7-97 27-92 (100)
202 3v4m_A Splicing factor U2AF 65 98.3 1.5E-06 5.1E-11 61.2 6.3 56 37-94 39-96 (105)
203 2diu_A KIAA0430 protein; struc 98.2 1.8E-06 6.1E-11 61.3 5.5 67 2-95 14-84 (96)
204 3tht_A Alkylated DNA repair pr 98.0 8.5E-06 2.9E-10 68.9 6.1 69 2-92 23-96 (345)
205 2j8a_A Histone-lysine N-methyl 98.0 1.3E-05 4.3E-10 60.2 6.3 72 2-91 7-92 (136)
206 3s6e_A RNA-binding protein 39; 98.0 1.8E-05 6.2E-10 56.7 6.5 63 37-108 41-103 (114)
207 3dxb_A Thioredoxin N-terminall 97.4 0.00062 2.1E-08 52.2 7.6 55 37-93 153-211 (222)
208 1owx_A Lupus LA protein, SS-B, 95.4 0.013 4.5E-07 42.5 3.8 72 2-99 23-98 (121)
209 2dnr_A Synaptojanin-1; RRM dom 95.2 0.063 2.1E-06 37.4 6.5 63 7-93 22-84 (91)
210 1wey_A Calcipressin 1; structu 92.8 0.076 2.6E-06 37.9 3.1 44 41-93 39-82 (104)
211 2kn4_A Immunoglobulin G-bindin 91.7 0.16 5.3E-06 36.4 3.7 27 51-77 9-35 (158)
212 1ufw_A Synaptojanin 2; RNP dom 90.5 0.66 2.3E-05 32.4 5.8 60 8-91 32-91 (95)
213 2l9w_A U4/U6 snRNA-associated- 87.3 2.3 7.8E-05 30.8 6.9 68 4-90 28-95 (117)
214 2dhx_A Poly (ADP-ribose) polym 58.6 19 0.00063 25.4 5.0 53 2-74 13-66 (104)
215 2i2y_A Fusion protein consists 54.5 6.6 0.00023 27.5 2.2 39 52-93 10-49 (150)
216 3rw6_A Nuclear RNA export fact 44.0 38 0.0013 26.8 5.3 60 6-86 32-92 (267)
217 1eij_A Hypothetical protein MT 24.4 45 0.0015 22.3 2.3 18 4-21 51-68 (80)
218 2fh0_A Hypothetical 16.0 kDa p 22.0 53 0.0018 22.0 2.2 19 4-22 49-67 (81)
219 2hpu_A NOSL protein; alpha bet 22.0 55 0.0019 24.6 2.6 33 46-78 100-133 (175)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.48 E-value=1.3e-13 Score=96.25 Aligned_cols=75 Identities=24% Similarity=0.360 Sum_probs=70.4
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.+ .|....+.++.|..++.++|||||.|.++++|.++.+.+||..|.
T Consensus 24 V~nLp~~~te~~L~~~F~~----------------~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~ 87 (99)
T 4fxv_A 24 VNYLPQNMTQDELRSLFSS----------------IGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQ 87 (99)
T ss_dssp EESCCTTCCHHHHHHHHHT----------------TSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EeCCCCCCCHHHHHHHHHh----------------cCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEEC
Confidence 7899999999999999987 478889999999999999999999999999999999999999998
Q ss_pred CCCcEEEEEeccC
Q 040456 82 AQWLEFLTSACGD 94 (146)
Q Consensus 82 ~~~Kic~V~yAri 94 (146)
. +.+.|.||+.
T Consensus 88 g--r~l~V~~AkP 98 (99)
T 4fxv_A 88 S--KTIKVSYARP 98 (99)
T ss_dssp T--EECEEEECCB
T ss_pred C--EEEEEEEeeC
Confidence 7 9999999974
No 2
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.39 E-value=3.2e-13 Score=94.41 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=67.6
Q ss_pred CCcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcc
Q 040456 1 MIKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRW 80 (146)
Q Consensus 1 MirNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w 80 (146)
+|+|||...|+++|.++|.+++ .-..--+.++.|..++.++|||||.|.++++|.++.+.+||..+
T Consensus 13 fV~nL~~~~tee~L~~~F~~~G--------------~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~ 78 (95)
T 2lkz_A 13 ILRNIAPHTVVDSIMTALSPYA--------------SLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHP 78 (95)
T ss_dssp EEESCCTTCCHHHHHHHSTTTC--------------CCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSS
T ss_pred EEeCCCCcCCHHHHHHHHHhhC--------------CccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCC
Confidence 4899999999999999998753 11345688999999999999999999999999999999999875
Q ss_pred cCC--CcEEEEEecc
Q 040456 81 EAQ--WLEFLTSACG 93 (146)
Q Consensus 81 ~~~--~Kic~V~yAr 93 (146)
... .+.+.|.||+
T Consensus 79 ~~~i~Gr~i~V~~Ak 93 (95)
T 2lkz_A 79 PLKIDGKTIGVDFAK 93 (95)
T ss_dssp CEEETTEEEEEEECC
T ss_pred CceECCEEEEEEEcc
Confidence 421 2899999996
No 3
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.36 E-value=1.8e-12 Score=86.05 Aligned_cols=74 Identities=15% Similarity=0.223 Sum_probs=69.1
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++..+ |...-+.++.|..++.+.|||||.|.++++|.++.+.+||..+.
T Consensus 12 V~nl~~~~~~~~l~~~f~~~----------------G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 75 (85)
T 3mdf_A 12 VGGLAEEVDDKVLHAAFIPF----------------GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF 75 (85)
T ss_dssp EECCCTTCCHHHHHHHHGGG----------------SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EECCCCCCCHHHHHHHHhcc----------------CCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 68999999999999999874 68888999999999999999999999999999999999999987
Q ss_pred CCCcEEEEEecc
Q 040456 82 AQWLEFLTSACG 93 (146)
Q Consensus 82 ~~~Kic~V~yAr 93 (146)
. +.+.|.||+
T Consensus 76 g--~~l~v~~ak 85 (85)
T 3mdf_A 76 G--RTIRVNLAK 85 (85)
T ss_dssp T--EECEEEECC
T ss_pred C--cEEEEEEcC
Confidence 7 899999986
No 4
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.34 E-value=4.4e-12 Score=83.85 Aligned_cols=76 Identities=14% Similarity=0.182 Sum_probs=70.3
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.. .|....+.++.|..++.+.|||||.|.++++|.++.+.++|..+.
T Consensus 6 V~nlp~~~t~~~l~~~f~~----------------~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 69 (83)
T 3md1_A 6 VGDLNVNVDDETLRNAFKD----------------FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN 69 (83)
T ss_dssp EECCCTTCCHHHHHHHHTT----------------STTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred EeCCCCCCCHHHHHHHHHh----------------cCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC
Confidence 7899999999999999976 468888999999999999999999999999999999999999987
Q ss_pred CCCcEEEEEeccCc
Q 040456 82 AQWLEFLTSACGDQ 95 (146)
Q Consensus 82 ~~~Kic~V~yAriQ 95 (146)
. +.+.|.||+-+
T Consensus 70 g--~~l~v~~a~~~ 81 (83)
T 3md1_A 70 G--RPLRINWAAKL 81 (83)
T ss_dssp T--EECEEEECCCC
T ss_pred C--cEEEEEecCcC
Confidence 7 89999999754
No 5
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.33 E-value=4.7e-12 Score=84.36 Aligned_cols=76 Identities=12% Similarity=0.160 Sum_probs=69.1
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++..+ |...-+.++.|..++.+.|||||.|.++++|.++.+.++|..+.
T Consensus 11 v~nlp~~~t~~~l~~~F~~~----------------G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 74 (87)
T 3bs9_A 11 VGDLSPEITTAAIAAAFAPF----------------GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG 74 (87)
T ss_dssp EESCCTTCCHHHHHHHHGGG----------------SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EeCCCCCCCHHHHHHHHHhc----------------CCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 68999999999999999874 67888999999999999999999999999999999999999988
Q ss_pred CCCcEEEEEeccCc
Q 040456 82 AQWLEFLTSACGDQ 95 (146)
Q Consensus 82 ~~~Kic~V~yAriQ 95 (146)
. +.+.|.||+-+
T Consensus 75 g--~~l~v~~a~~k 86 (87)
T 3bs9_A 75 G--RQIRTNWATRK 86 (87)
T ss_dssp T--EECEEEEEC--
T ss_pred C--eEEEEEecCCC
Confidence 7 89999999754
No 6
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=1.4e-11 Score=84.77 Aligned_cols=83 Identities=16% Similarity=0.208 Sum_probs=74.9
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.. .|....+.++.|..++.+.|||||.|.++++|.+..+.++|..+.
T Consensus 13 V~nlp~~~~~~~l~~~f~~----------------~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (104)
T 1p1t_A 13 VGNIPYEATEEQLKDIFSE----------------VGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFS 76 (104)
T ss_dssp EESCCTTSCHHHHHHHHHT----------------TSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCS
T ss_pred EeCCCCcCCHHHHHHHHHh----------------cCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 6899999999999999987 468888999999999999999999999999999999999999987
Q ss_pred CCCcEEEEEeccCcChHHHHH
Q 040456 82 AQWLEFLTSACGDQGMDALKI 102 (146)
Q Consensus 82 ~~~Kic~V~yAriQG~~al~~ 102 (146)
. +.+.|.||+-+.......
T Consensus 77 g--~~l~v~~a~~~~~~~~~~ 95 (104)
T 1p1t_A 77 G--RALRVDNAASEKNKEELK 95 (104)
T ss_dssp S--SCBEEEETTCTTHHHHHH
T ss_pred C--cEEEEEeCCCccchhhhc
Confidence 7 889999999887665433
No 7
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=4.3e-12 Score=86.80 Aligned_cols=80 Identities=14% Similarity=0.144 Sum_probs=71.8
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccc-eEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYD-FLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRW 80 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yD-FlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w 80 (146)
|.|||...|+++|.+++.++ |... -+.++.|..++.+.|||||.|.++++|.++.+.+||..+
T Consensus 14 V~nLp~~~t~~~l~~~F~~~----------------G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 77 (99)
T 2div_A 14 MGDLEPYMDENFISRAFATM----------------GETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPL 77 (99)
T ss_dssp ECSCCTTCCHHHHHHHHHHT----------------TCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEE
T ss_pred EeCCCCCCCHHHHHHHHHHh----------------CCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCcc
Confidence 78999999999999999874 6777 889999999999999999999999999999999999998
Q ss_pred cCCC--cEEEEEeccCcCh
Q 040456 81 EAQW--LEFLTSACGDQGM 97 (146)
Q Consensus 81 ~~~~--Kic~V~yAriQG~ 97 (146)
.... +.+.|.||+.++.
T Consensus 78 ~g~~~~~~l~v~~a~~~~~ 96 (99)
T 2div_A 78 PGATPAKRFKLNYATYSGP 96 (99)
T ss_dssp SSCSSCEECCEEETTCCSS
T ss_pred CCCCcceeEEEeecCCCCC
Confidence 8733 3499999998875
No 8
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=2.6e-12 Score=86.95 Aligned_cols=74 Identities=19% Similarity=0.195 Sum_probs=69.0
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.. .|....+.++.|..++.+.|||||.|.++++|.++++.++|..+.
T Consensus 21 V~nlp~~~t~~~l~~~f~~----------------~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 84 (94)
T 2e5h_A 21 VSNLPFSLTNNDLYRIFSK----------------YGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF 84 (94)
T ss_dssp EESCCTTSCHHHHHHHTTT----------------TSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET
T ss_pred EECCCCCCCHHHHHHHHHh----------------cCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 7899999999999999976 468888999999999999999999999999999999999999988
Q ss_pred CCCcEEEEEecc
Q 040456 82 AQWLEFLTSACG 93 (146)
Q Consensus 82 ~~~Kic~V~yAr 93 (146)
. +.+.|.||+
T Consensus 85 g--~~l~v~~ak 94 (94)
T 2e5h_A 85 G--RVIKASIAI 94 (94)
T ss_dssp T--EEEEEEECC
T ss_pred C--cEEEEEecC
Confidence 7 999999986
No 9
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=9.7e-12 Score=84.09 Aligned_cols=74 Identities=15% Similarity=0.120 Sum_probs=69.2
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.. .|....+.++.|..++.+.|||||.|.++++|.+.++.++|..+.
T Consensus 20 v~nlp~~~t~~~l~~~f~~----------------~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 83 (95)
T 2cqc_A 20 VFGLSLYTTERDLREVFSK----------------YGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD 83 (95)
T ss_dssp EESCCSSCCHHHHHHHHHT----------------TSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred EECCCCCCCHHHHHHHHHh----------------cCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 7899999999999999987 468889999999999999999999999999999999999999987
Q ss_pred CCCcEEEEEecc
Q 040456 82 AQWLEFLTSACG 93 (146)
Q Consensus 82 ~~~Kic~V~yAr 93 (146)
. +.+.|.||+
T Consensus 84 g--~~l~v~~a~ 93 (95)
T 2cqc_A 84 G--RRIRVSGPS 93 (95)
T ss_dssp T--EEEEEECCS
T ss_pred C--EEEEEEecC
Confidence 7 899999986
No 10
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=7.7e-12 Score=86.50 Aligned_cols=77 Identities=17% Similarity=0.208 Sum_probs=71.4
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++..+ |...-+.++.|..++.+.|||||.|.++++|.++.+.++|..+.
T Consensus 28 V~nlp~~~t~~~l~~~f~~~----------------G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 91 (106)
T 1p27_B 28 VTGVHEEATEEDIHDKFAEY----------------GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM 91 (106)
T ss_dssp EECCCTTCCHHHHHHHHGGG----------------SCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSS
T ss_pred EeCCCCCCCHHHHHHHHhcc----------------CCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEEC
Confidence 68999999999999999874 68888999999999999999999999999999999999999988
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+-++
T Consensus 92 g--~~l~V~~a~~~~ 104 (106)
T 1p27_B 92 G--QPISVDWCFVRG 104 (106)
T ss_dssp S--SBCEEEESEESS
T ss_pred C--cEEEEEeecCCC
Confidence 7 889999998765
No 11
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.30 E-value=7.6e-12 Score=85.55 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=71.7
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.. .|...-+.++.|..++.+.|||||.|.++++|.++.+.++|..+.
T Consensus 13 V~nlp~~~t~~~l~~~F~~----------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (99)
T 1whw_A 13 VRNLSYTSSEEDLEKLFSA----------------YGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ 76 (99)
T ss_dssp EECCCTTCCHHHHHHHHHT----------------TSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESS
T ss_pred EeCCCCCCCHHHHHHHHHh----------------cCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 7899999999999999987 468888999999999999999999999999999999999999987
Q ss_pred CCCcEEEEEeccCcCh
Q 040456 82 AQWLEFLTSACGDQGM 97 (146)
Q Consensus 82 ~~~Kic~V~yAriQG~ 97 (146)
. +.+.|.||+-+..
T Consensus 77 g--~~l~V~~a~~~~~ 90 (99)
T 1whw_A 77 G--RMLHVLPSTIKKE 90 (99)
T ss_dssp S--CEEEEEECCCCST
T ss_pred C--cEEEEEEcCCCcc
Confidence 7 9999999987643
No 12
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.30 E-value=2.3e-12 Score=88.32 Aligned_cols=79 Identities=19% Similarity=0.241 Sum_probs=67.9
Q ss_pred CCcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHh-cCCc
Q 040456 1 MIKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAF-NKSR 79 (146)
Q Consensus 1 MirNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f-~g~~ 79 (146)
+|+|||...|+++|.+++.+++ ....-+.|+.|..++.++|||||.|.++++|.++.+.. ++..
T Consensus 5 ~v~nLp~~~te~~l~~~F~~~G---------------~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~ 69 (91)
T 2lxi_A 5 MLRMLPQAATEDDIRGQLQSHG---------------VQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLN 69 (91)
T ss_dssp EEETCCSSCCHHHHHHHHHHHT---------------CCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHhC---------------CEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeE
Confidence 4899999999999999998862 25667889999999999999999999999999999876 4556
Q ss_pred ccCCCcEEEEEeccCcC
Q 040456 80 WEAQWLEFLTSACGDQG 96 (146)
Q Consensus 80 w~~~~Kic~V~yAriQG 96 (146)
+.. +.+.|.||+.+-
T Consensus 70 ~~g--r~i~V~~a~~~~ 84 (91)
T 2lxi_A 70 ILG--QKVSMHYSDPKP 84 (91)
T ss_dssp ETT--EEEEEECCCSCC
T ss_pred ECC--EEEEEEEcCCCC
Confidence 665 899999997653
No 13
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=7.4e-12 Score=84.83 Aligned_cols=77 Identities=18% Similarity=0.210 Sum_probs=70.6
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.+ .|...-+.++.|..++.++|||||.|.++++|.++.+.++|..+.
T Consensus 10 v~nlp~~~t~~~l~~~f~~----------------~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (95)
T 2dnz_A 10 VGSLHFNITEDMLRGIFEP----------------FGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELA 73 (95)
T ss_dssp EESCCTTCCHHHHHHHHTT----------------TSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred EeCCCCCCCHHHHHHHHHh----------------cCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 7899999999999999976 468888999999999999999999999999999999999999988
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+-+.
T Consensus 74 g--~~l~V~~a~~~~ 86 (95)
T 2dnz_A 74 G--RPMRVGHVTERL 86 (95)
T ss_dssp S--SCCEEEESSCCC
T ss_pred C--cEEEEEEccccc
Confidence 7 889999997553
No 14
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.30 E-value=8.7e-12 Score=85.14 Aligned_cols=80 Identities=16% Similarity=0.238 Sum_probs=73.6
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.+ .|...-+.++.|..++.+.|||||.|.++++|.++.+.++|..+.
T Consensus 7 V~nLp~~~t~~~l~~~F~~----------------~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 70 (96)
T 2x1f_A 7 LGSIPYDQTEEQILDLCSN----------------VGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLG 70 (96)
T ss_dssp EESCCTTCCHHHHHHHHHT----------------TSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EECCCCCCCHHHHHHHHHh----------------cCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 7899999999999999987 468888999999999999999999999999999999999999988
Q ss_pred CCCcEEEEEeccCcChHH
Q 040456 82 AQWLEFLTSACGDQGMDA 99 (146)
Q Consensus 82 ~~~Kic~V~yAriQG~~a 99 (146)
. +.+.|.||+-++...
T Consensus 71 g--~~l~V~~a~~~~~~~ 86 (96)
T 2x1f_A 71 S--RFLKCGYSSNSDISG 86 (96)
T ss_dssp T--EECEEEECSCSSGGG
T ss_pred C--eEEEEEEcCCCCCCC
Confidence 7 999999998877553
No 15
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.30 E-value=1.1e-11 Score=87.29 Aligned_cols=77 Identities=17% Similarity=0.203 Sum_probs=71.4
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.++|..+ |....+.++.|..++.+.|||||.|.++++|.++++.++|..+.
T Consensus 30 V~nLp~~~t~~~l~~~F~~~----------------G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 93 (115)
T 2cpz_A 30 IYHLPQEFGDQDLLQMFMPF----------------GNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG 93 (115)
T ss_dssp EESCCSSCCHHHHHHHHGGG----------------SCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred EeCCCCCCCHHHHHHHHHhc----------------CCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC
Confidence 78999999999999999874 67888999999999999999999999999999999999999988
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+-+.
T Consensus 94 g--~~l~V~~a~~~~ 106 (115)
T 2cpz_A 94 M--KRLKVQLKRSKN 106 (115)
T ss_dssp T--EECEEECCCCSC
T ss_pred C--EEEEEEEcCCCC
Confidence 7 999999998765
No 16
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=8.4e-12 Score=85.76 Aligned_cols=77 Identities=14% Similarity=0.190 Sum_probs=71.0
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.++|.. .|....+.++.|..++.+.|||||.|.++++|.++++.++|..+.
T Consensus 17 V~nLp~~~t~~~l~~~f~~----------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 2cqb_A 17 VGGLAEEVDDKVLHAAFIP----------------FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF 80 (102)
T ss_dssp EESCCSSCCHHHHHHHHTT----------------TSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET
T ss_pred EeCCCCCCCHHHHHHHhhc----------------cCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 7899999999999999976 467888999999999999999999999999999999999999987
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+-+.
T Consensus 81 g--~~l~V~~a~~~~ 93 (102)
T 2cqb_A 81 G--RTIRVNLAKPMR 93 (102)
T ss_dssp T--EEEEEEECCCCC
T ss_pred C--cEEEEEeCCCCC
Confidence 7 999999998664
No 17
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=1.3e-11 Score=84.75 Aligned_cols=77 Identities=14% Similarity=0.171 Sum_probs=70.6
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.++|..+ |....+.++.|..++.+.|||||.|.++++|.+.++.+||..+.
T Consensus 17 v~nLp~~~t~~~l~~~f~~~----------------G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 1x5s_A 17 VGGLSFDTNEQSLEQVFSKY----------------GQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVD 80 (102)
T ss_dssp EESCCTTCCHHHHHHHHHHH----------------SCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTT
T ss_pred EECCCCCCCHHHHHHHHHhc----------------CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 78999999999999999875 67888999999999999999999999999999999999999987
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+-+.
T Consensus 81 g--~~l~v~~a~~~~ 93 (102)
T 1x5s_A 81 G--RQIRVDQAGKSS 93 (102)
T ss_dssp S--CCCEEEEEECCC
T ss_pred C--eEEEEEECCCCC
Confidence 7 889999997653
No 18
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.28 E-value=9.2e-12 Score=84.41 Aligned_cols=77 Identities=12% Similarity=0.158 Sum_probs=66.8
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCC--ccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRS--EYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSR 79 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~--~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~ 79 (146)
|+|||...|+++|.+++..+ | ...-+.++.|-.++.++|||||.|.+.++|.+..+.+||..
T Consensus 6 V~nL~~~~t~~~l~~~F~~~----------------G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~ 69 (90)
T 3p5t_L 6 IGNLTWWTTDEDLTEAVHSL----------------GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRE 69 (90)
T ss_dssp EESCCTTCCHHHHHHHHHTT----------------TCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSC
T ss_pred EeCCCCCCCHHHHHHHHHHh----------------CCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCe
Confidence 68999999999999999764 5 77888999999999999999999999999999999999999
Q ss_pred ccCCCcEEEEEeccCcC
Q 040456 80 WEAQWLEFLTSACGDQG 96 (146)
Q Consensus 80 w~~~~Kic~V~yAriQG 96 (146)
+.. +.+.|.+|..+.
T Consensus 70 ~~g--r~i~V~~~~~~~ 84 (90)
T 3p5t_L 70 LHG--QNPVVTPSNKLE 84 (90)
T ss_dssp SSS--CCCEECCC----
T ss_pred eCC--EEEEEEECCCCc
Confidence 887 889999987653
No 19
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=1e-11 Score=84.29 Aligned_cols=77 Identities=19% Similarity=0.131 Sum_probs=69.9
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceE-EEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFL-YLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRW 80 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFl-YLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w 80 (146)
|+|||...|+++|.+++..+ |...-+ .++.|..++.+.|||||.|.++++|.++.+.++|..+
T Consensus 10 V~nLp~~~t~~~l~~~F~~~----------------G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 73 (96)
T 1x5t_A 10 IGNLDPEIDEKLLYDTFSAF----------------GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL 73 (96)
T ss_dssp EECCCTTCCHHHHHHHHHTT----------------SCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE
T ss_pred EeCCCCCCCHHHHHHHHHhc----------------CCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE
Confidence 78999999999999999874 566667 9999999999999999999999999999999999998
Q ss_pred cCCCcEEEEEeccCcC
Q 040456 81 EAQWLEFLTSACGDQG 96 (146)
Q Consensus 81 ~~~~Kic~V~yAriQG 96 (146)
.. +.+.|.||+-+.
T Consensus 74 ~g--~~l~v~~a~~~~ 87 (96)
T 1x5t_A 74 CN--RPITVSYAFKKD 87 (96)
T ss_dssp TT--EECEEEESCCCC
T ss_pred CC--EEEEEEEecccC
Confidence 76 999999997654
No 20
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=8.8e-12 Score=85.97 Aligned_cols=78 Identities=18% Similarity=0.263 Sum_probs=71.4
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.++|.. .|...-+.++.|..++.+.|||||.|.++++|.+..+.++|..+.
T Consensus 18 V~nLp~~~t~~~l~~~f~~----------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (103)
T 2dnm_A 18 VDNLTYRTSPDSLRRVFEK----------------YGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD 81 (103)
T ss_dssp EESCCTTCCHHHHHHHHTT----------------TSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBT
T ss_pred EeCCCCCCCHHHHHHHHHh----------------cCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 7899999999999999976 468888999999999999999999999999999999999999988
Q ss_pred CCCcEEEEEeccCcCh
Q 040456 82 AQWLEFLTSACGDQGM 97 (146)
Q Consensus 82 ~~~Kic~V~yAriQG~ 97 (146)
. +.+.|.||+-+..
T Consensus 82 g--~~l~V~~a~~~~~ 95 (103)
T 2dnm_A 82 G--RELRVQVARYGRR 95 (103)
T ss_dssp T--BCCEEEECSSCCS
T ss_pred C--cEEEEEECCcCCC
Confidence 7 8999999986543
No 21
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.26 E-value=2.1e-11 Score=83.62 Aligned_cols=74 Identities=14% Similarity=0.096 Sum_probs=66.8
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccce--------EEEceeccCCcceeEEEEeccChHHHHHHHH
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDF--------LYLPMDFCHGANLGYAFVNFTTSVAAVRFAK 73 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDF--------lYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~ 73 (146)
|+|||...|+++|.+++..+ |.... +.++.|-.++.+.|||||.|.+.++|.+..+
T Consensus 18 V~nLp~~~t~~~l~~~F~~~----------------G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~ 81 (99)
T 2la6_A 18 VQGLGENVTIESVADYFKQI----------------GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAID 81 (99)
T ss_dssp EECCCSSCCHHHHHHHHTTT----------------SCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHHh----------------CCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHH
Confidence 68999999999999999874 45555 8999999999999999999999999999999
Q ss_pred HhcCCcccCCCcEEEEEecc
Q 040456 74 AFNKSRWEAQWLEFLTSACG 93 (146)
Q Consensus 74 ~f~g~~w~~~~Kic~V~yAr 93 (146)
.++|..+.. +.+.|.||+
T Consensus 82 ~l~g~~~~g--~~l~V~~A~ 99 (99)
T 2la6_A 82 WFDGKEFSG--NPIKVSFAT 99 (99)
T ss_dssp HHTTCBSSS--SBCEEEECC
T ss_pred HhCCCEeCC--cEEEEEecC
Confidence 999999887 888888885
No 22
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.25 E-value=1.5e-11 Score=85.66 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=71.9
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.++|..+ |...-+.++.|..++.+.|||||.|.++++|.++++.++|..+.
T Consensus 31 V~nlp~~~t~~~l~~~F~~~----------------G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 94 (110)
T 1oo0_B 31 VTSIHEEAQEDEIQEKFCDY----------------GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM 94 (110)
T ss_dssp EESCCTTCCHHHHHHHHGGG----------------SCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EeCCCCCCCHHHHHHHHHhc----------------CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 78999999999999999874 68888999999999999999999999999999999999999987
Q ss_pred CCCcEEEEEeccCcCh
Q 040456 82 AQWLEFLTSACGDQGM 97 (146)
Q Consensus 82 ~~~Kic~V~yAriQG~ 97 (146)
. +.+.|.||+.++.
T Consensus 95 g--~~l~V~~a~~~~~ 108 (110)
T 1oo0_B 95 G--QTIQVDWCFVKGP 108 (110)
T ss_dssp T--EECEEEESEESSC
T ss_pred C--cEEEEEEcccCCC
Confidence 7 9999999987763
No 23
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=3.2e-11 Score=82.73 Aligned_cols=76 Identities=14% Similarity=0.166 Sum_probs=69.3
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.. .|...-+.++.|. ++.+.|||||.|.++++|.++.+.++|..+.
T Consensus 22 v~nlp~~~t~~~l~~~F~~----------------~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 84 (100)
T 2do4_A 22 ISGLPFSCTKEELEEICKA----------------HGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIK 84 (100)
T ss_dssp EESCCTTCCHHHHHHHHTT----------------TSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESS
T ss_pred EeCCCCCCCHHHHHHHHHh----------------CCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 7899999999999999976 4678889999998 8999999999999999999999999999887
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+.+.
T Consensus 85 g--~~l~v~~a~~~~ 97 (100)
T 2do4_A 85 E--NIIKVAISNSGP 97 (100)
T ss_dssp S--CEEEEEECCCCS
T ss_pred C--EEEEEEECCCCC
Confidence 7 899999998654
No 24
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.25 E-value=2.2e-11 Score=86.63 Aligned_cols=76 Identities=13% Similarity=0.048 Sum_probs=70.5
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.+ .|...-+.++.|..|+.++|||||.|.++++|.++++.+||..+.
T Consensus 11 V~nL~~~~te~~L~~~F~~----------------~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~ 74 (110)
T 3s8s_A 11 FARLNDNVRETFLKDMCRK----------------YGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM 74 (110)
T ss_dssp EESCCTTCCHHHHHHHHTT----------------TSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EECCCCCCCHHHHHHHHHh----------------cCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 6899999999999999976 478899999999999999999999999999999999999999988
Q ss_pred CCCcEEEEEeccCc
Q 040456 82 AQWLEFLTSACGDQ 95 (146)
Q Consensus 82 ~~~Kic~V~yAriQ 95 (146)
. +.+.|.+|+-.
T Consensus 75 g--r~i~V~~a~~~ 86 (110)
T 3s8s_A 75 G--NIIHAQLDIKG 86 (110)
T ss_dssp T--EECEEEECSTT
T ss_pred C--eEEEEEECCCC
Confidence 7 99999999643
No 25
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=1.1e-11 Score=85.42 Aligned_cols=77 Identities=18% Similarity=0.293 Sum_probs=70.8
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|.|||...|+++|.+++.. .|....+.++.|..++.+.|||||.|.++++|.++++.++|..+.
T Consensus 20 V~nlp~~~t~~~l~~~f~~----------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 83 (103)
T 2cq0_A 20 VTNLSEDTRETDLQELFRP----------------FGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD 83 (103)
T ss_dssp EESCCTTCCHHHHHTTSTT----------------TCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEET
T ss_pred EeCCCCCCCHHHHHHHHHh----------------CCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 6899999999999999876 468888999999999999999999999999999999999999987
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+-+.
T Consensus 84 g--~~l~v~~a~~~~ 96 (103)
T 2cq0_A 84 H--LILNVEWAKPST 96 (103)
T ss_dssp T--EECEEEESSCCC
T ss_pred C--cEEEEEECCCCC
Confidence 7 999999998664
No 26
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.24 E-value=2.5e-11 Score=85.54 Aligned_cols=76 Identities=17% Similarity=0.238 Sum_probs=70.1
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.++|.. .|....+.++.|..++.+.|||||.|.++++|.++.+.++|..+.
T Consensus 31 V~nLp~~~te~~l~~~F~~----------------~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~ 94 (108)
T 2jrs_A 31 VGSLHFNITEDMLRGIFEP----------------FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA 94 (108)
T ss_dssp EECCCSSCCHHHHHHHHTT----------------TSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred EeCCCCCCCHHHHHHHHHh----------------cCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 7899999999999999976 468888999999999999999999999999999999999999987
Q ss_pred CCCcEEEEEeccCc
Q 040456 82 AQWLEFLTSACGDQ 95 (146)
Q Consensus 82 ~~~Kic~V~yAriQ 95 (146)
. +.+.|.||+-+
T Consensus 95 g--~~l~V~~a~~k 106 (108)
T 2jrs_A 95 G--RPMKVGHVTER 106 (108)
T ss_dssp S--SCCEEECSCSS
T ss_pred C--EEEEEEEcccC
Confidence 7 88999999765
No 27
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.24 E-value=2.6e-11 Score=85.11 Aligned_cols=77 Identities=13% Similarity=0.174 Sum_probs=71.0
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.++|..+ |....+.++.|..++.+.|||||.|.++++|.++++.++|..+.
T Consensus 20 V~nlp~~~t~~~l~~~F~~~----------------G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (115)
T 2dgo_A 20 VGDLSPEITTEDIKAAFAPF----------------GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG 83 (115)
T ss_dssp EESCCTTCCHHHHHHHHGGG----------------SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET
T ss_pred EeCCCCCCCHHHHHHHHHhc----------------CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 78999999999999999874 67888999999999999999999999999999999999999987
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+-+.
T Consensus 84 g--~~l~V~~a~~~~ 96 (115)
T 2dgo_A 84 G--RQIRTNWATRKP 96 (115)
T ss_dssp T--EECEEEESSCCC
T ss_pred C--EEEEEEEccCCC
Confidence 7 999999997654
No 28
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=1.9e-11 Score=84.29 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=68.4
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.++|.. .|...-+.++.| ++.+.|||||.|.++++|.++++.++|..+.
T Consensus 20 V~nlp~~~t~~~l~~~F~~----------------~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (103)
T 2d9p_A 20 VKNLDDGIDDERLRKAFSP----------------FGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 81 (103)
T ss_dssp EECCCTTCCHHHHHHTTTT----------------TSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred EeCCCCCCCHHHHHHHHHh----------------cCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 7899999999999999976 467888999999 8999999999999999999999999999987
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+-+.
T Consensus 82 g--~~l~V~~a~~~~ 94 (103)
T 2d9p_A 82 T--KPLYVALAQRKE 94 (103)
T ss_dssp S--SBCEEEECSSCC
T ss_pred C--cEEEEEEecccc
Confidence 6 899999997654
No 29
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.24 E-value=2e-11 Score=81.29 Aligned_cols=76 Identities=17% Similarity=0.350 Sum_probs=69.4
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCc-ceeEEEEeccChHHHHHHHHHhcCCcc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGA-NLGYAFVNFTTSVAAVRFAKAFNKSRW 80 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~-N~GYAFVNf~~~~~a~~f~~~f~g~~w 80 (146)
|+|||...|+++|.+++.. .|...-+.++.|..++. +.|||||.|.++++|.+..+.+||..+
T Consensus 9 V~nlp~~~t~~~l~~~F~~----------------~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 72 (88)
T 4a8x_A 9 IGRLTRNVTKDHIMEIFST----------------YGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQI 72 (88)
T ss_dssp EECCCTTCCHHHHHHHHHT----------------TSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred EeCCCCCCCHHHHHHHHHh----------------CCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeE
Confidence 7899999999999999986 46888899999998776 999999999999999999999999998
Q ss_pred cCCCcEEEEEeccCc
Q 040456 81 EAQWLEFLTSACGDQ 95 (146)
Q Consensus 81 ~~~~Kic~V~yAriQ 95 (146)
.. +.+.|.+|+.+
T Consensus 73 ~g--~~l~v~~a~~~ 85 (88)
T 4a8x_A 73 DG--QEITATAVLAP 85 (88)
T ss_dssp TT--EECEEEEECCC
T ss_pred CC--eEEEEEECCCC
Confidence 87 89999999765
No 30
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=2e-11 Score=84.21 Aligned_cols=77 Identities=14% Similarity=0.187 Sum_probs=71.0
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.++|.. .|....+.++.|..++.+.|||||.|.++++|.++++.++|..+.
T Consensus 20 V~nlp~~~t~~~l~~~F~~----------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (105)
T 1x5u_A 20 VGGLDEKVSEPLLWELFLQ----------------AGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY 83 (105)
T ss_dssp EECCCTTCCHHHHHHHHHT----------------TSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS
T ss_pred EeCCCCCCCHHHHHHHHHh----------------cCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 6899999999999999987 468888999999999999999999999999999999999999987
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+-+.
T Consensus 84 g--~~l~v~~a~~~~ 96 (105)
T 1x5u_A 84 G--KPIRVNKASAHN 96 (105)
T ss_dssp S--CBCEEEETTTTS
T ss_pred C--eEEEEEECCCCC
Confidence 7 889999997664
No 31
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.24 E-value=3.1e-11 Score=83.43 Aligned_cols=79 Identities=16% Similarity=0.251 Sum_probs=69.9
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|.|||...|+++|.+++..+ |...-+.++.|..++.++|||||.|.++++|.++++.++|..+-
T Consensus 18 V~nlp~~~t~~~l~~~F~~~----------------G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (106)
T 2dgp_A 18 IGQIPRNLDEKDLKPLFEEF----------------GKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTL 81 (106)
T ss_dssp EESCCTTCCHHHHHHHHHHH----------------SCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCC
T ss_pred EeCCCCCCCHHHHHHHHHhc----------------CCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCccc
Confidence 68999999999999999885 67888999999999999999999999999999999999998862
Q ss_pred C-CCcEEEEEeccCcC
Q 040456 82 A-QWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~-~~Kic~V~yAriQG 96 (146)
. ..+.+.|.||+-+.
T Consensus 82 ~~~g~~l~v~~a~~~~ 97 (106)
T 2dgp_A 82 PGMNRPIQVKPADSES 97 (106)
T ss_dssp TTCSSCCEEEECCCCS
T ss_pred CCCCceEEEEECCccc
Confidence 2 12888999997654
No 32
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.23 E-value=2.7e-11 Score=81.99 Aligned_cols=73 Identities=15% Similarity=0.134 Sum_probs=67.0
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++..+ |...-+.++.|.. +.+.|||||.|.++++|.+..+.++|..+.
T Consensus 21 v~nlp~~~~~~~l~~~F~~~----------------G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (95)
T 2ywk_A 21 VGNLEARVREEILYELFLQA----------------GPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLY 83 (95)
T ss_dssp EECCCTTCCHHHHHHHHGGG----------------SCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEET
T ss_pred EECCCCCCCHHHHHHHHHhc----------------CCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 78999999999999999874 6888899999976 889999999999999999999999999987
Q ss_pred CCCcEEEEEecc
Q 040456 82 AQWLEFLTSACG 93 (146)
Q Consensus 82 ~~~Kic~V~yAr 93 (146)
. +.+.|.||+
T Consensus 84 g--~~l~V~~a~ 93 (95)
T 2ywk_A 84 G--RPINVSGPS 93 (95)
T ss_dssp T--EECEEECCC
T ss_pred C--CEEEEEEcC
Confidence 7 889999986
No 33
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.23 E-value=2.1e-11 Score=86.80 Aligned_cols=78 Identities=17% Similarity=0.197 Sum_probs=71.7
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|.|||...|+++|.++|.. .|...-+.++.|..++.+.|||||.|.++++|..+++.++|..+.
T Consensus 27 V~nlp~~~t~~~l~~~F~~----------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 90 (126)
T 3ex7_B 27 VTGVHEEATEEDIHDKFAE----------------YGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM 90 (126)
T ss_dssp EESCCTTCCHHHHHHHHHT----------------TSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred EeCCCCCCCHHHHHHHHHh----------------cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 7899999999999999986 468889999999999999999999999999999999999999987
Q ss_pred CCCcEEEEEeccCcCh
Q 040456 82 AQWLEFLTSACGDQGM 97 (146)
Q Consensus 82 ~~~Kic~V~yAriQG~ 97 (146)
. +.+.|.||+.++.
T Consensus 91 g--~~l~v~~a~~~~~ 104 (126)
T 3ex7_B 91 G--QPISVDWCFVRGP 104 (126)
T ss_dssp S--SBCEEEESEESSS
T ss_pred C--eEEEEEEecCCCC
Confidence 7 8899999987654
No 34
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.23 E-value=3.7e-11 Score=83.14 Aligned_cols=73 Identities=16% Similarity=0.198 Sum_probs=67.6
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.. .|....+.++.|. ++.+.|||||.|.++++|.++++.++|..+.
T Consensus 34 V~nlp~~~t~~~l~~~F~~----------------~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 96 (107)
T 3ulh_A 34 VSNLDFGVSDADIQELFAE----------------FGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLD 96 (107)
T ss_dssp EESCCTTCCHHHHHHHHHT----------------TSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EeCCCCCCCHHHHHHHHHh----------------cCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 7899999999999999986 4788899999998 9999999999999999999999999999987
Q ss_pred CCCcEEEEEecc
Q 040456 82 AQWLEFLTSACG 93 (146)
Q Consensus 82 ~~~Kic~V~yAr 93 (146)
. +.+.|.||.
T Consensus 97 g--~~l~V~~a~ 106 (107)
T 3ulh_A 97 G--RPMNIQLVT 106 (107)
T ss_dssp T--EECEEEEEC
T ss_pred C--cEEEEEEeC
Confidence 7 889999884
No 35
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.22 E-value=3.3e-11 Score=83.23 Aligned_cols=77 Identities=19% Similarity=0.337 Sum_probs=70.3
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEcee-ccCCcceeEEEEeccChHHHHHHHHHh-cCCc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMD-FCHGANLGYAFVNFTTSVAAVRFAKAF-NKSR 79 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiD-f~~~~N~GYAFVNf~~~~~a~~f~~~f-~g~~ 79 (146)
|+|||...|+++|.++|.. .|...-+.++.| -.++.+.|||||.|.++++|.++++.+ +|..
T Consensus 20 V~nlp~~~t~~~l~~~F~~----------------~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 83 (107)
T 2cph_A 20 VRNIPFQANQREIRELFST----------------FGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTH 83 (107)
T ss_dssp EESCCTTCCHHHHHHHHHT----------------TSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCB
T ss_pred EeCCCCcCCHHHHHHHHHc----------------cCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCe
Confidence 7899999999999999987 468888999999 789999999999999999999999999 9999
Q ss_pred ccCCCcEEEEEeccCcC
Q 040456 80 WEAQWLEFLTSACGDQG 96 (146)
Q Consensus 80 w~~~~Kic~V~yAriQG 96 (146)
+.. +.+.|.||+-+.
T Consensus 84 ~~g--~~l~v~~a~~~~ 98 (107)
T 2cph_A 84 LYG--RRLVLEWADSEV 98 (107)
T ss_dssp SSS--CBCEEEECCCCC
T ss_pred ECC--CEEEEEeCCCCC
Confidence 887 889999997654
No 36
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.22 E-value=3.3e-11 Score=82.21 Aligned_cols=77 Identities=12% Similarity=0.124 Sum_probs=69.8
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceecc---CCcceeEEEEeccChHHHHHHHHHhcCC
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFC---HGANLGYAFVNFTTSVAAVRFAKAFNKS 78 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~---~~~N~GYAFVNf~~~~~a~~f~~~f~g~ 78 (146)
|+|||...|+++|.+++.. .|...-+.++.|.. ++.+.|||||.|.++++|.+.++.++|.
T Consensus 10 V~nLp~~~t~~~l~~~F~~----------------~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~ 73 (98)
T 2cpf_A 10 IKNLNFSTTEETLKGVFSK----------------VGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGH 73 (98)
T ss_dssp EESCCTTCCHHHHHHHHHT----------------TSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTC
T ss_pred EeCCCCCCCHHHHHHHHHh----------------cCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCC
Confidence 7899999999999999986 46888899999987 7799999999999999999999999999
Q ss_pred cccCCCcEEEEEeccCcC
Q 040456 79 RWEAQWLEFLTSACGDQG 96 (146)
Q Consensus 79 ~w~~~~Kic~V~yAriQG 96 (146)
.+.. +.+.|.||+-+.
T Consensus 74 ~~~g--~~l~V~~a~~~~ 89 (98)
T 2cpf_A 74 TVDG--HKLEVRISERAT 89 (98)
T ss_dssp EETT--EECEEECSSCSS
T ss_pred eeCC--eEEEEEEccCCC
Confidence 9887 899999997654
No 37
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.22 E-value=1.9e-11 Score=79.58 Aligned_cols=72 Identities=11% Similarity=0.158 Sum_probs=64.6
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.++ |...-+.++.|..++.+.|||||.|.++++|....+ ++|..+.
T Consensus 4 v~nlp~~~t~~~l~~~F~~~----------------G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~ 66 (75)
T 2mss_A 4 VGGLSVNTTVEDVKHYFEQF----------------GKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEIN 66 (75)
T ss_dssp EECCCSSCCHHHHHHHHHTT----------------SCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSS
T ss_pred EecCCCCCCHHHHHHHHHhc----------------CCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEEC
Confidence 68999999999999999874 678888999999999999999999999999999887 8999887
Q ss_pred CCCcEEEEEec
Q 040456 82 AQWLEFLTSAC 92 (146)
Q Consensus 82 ~~~Kic~V~yA 92 (146)
. +.+.|.||
T Consensus 67 g--~~l~v~~A 75 (75)
T 2mss_A 67 N--KMVECKKA 75 (75)
T ss_dssp S--CCCEEECC
T ss_pred C--EEEEEEeC
Confidence 7 77777776
No 38
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.21 E-value=1.4e-11 Score=86.84 Aligned_cols=74 Identities=18% Similarity=0.117 Sum_probs=67.9
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.++|.+ .|....+.++.|-.++.+.|||||.|.++++|.+.++.+||..+.
T Consensus 45 V~nlp~~~t~~~l~~~F~~----------------~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 108 (118)
T 2khc_A 45 IYHLPQEFTDTDLASTFLP----------------FGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG 108 (118)
T ss_dssp EECSCTTCCHHHHHHHTTT----------------SCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET
T ss_pred EeCCCCCCCHHHHHHHHHh----------------cCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 7899999999999999976 478888999999999999999999999999999999999999988
Q ss_pred CCCcEEEEEecc
Q 040456 82 AQWLEFLTSACG 93 (146)
Q Consensus 82 ~~~Kic~V~yAr 93 (146)
. +.+.|.|||
T Consensus 109 g--~~l~V~~ak 118 (118)
T 2khc_A 109 T--KRLKVQLKK 118 (118)
T ss_dssp T--EECCEEEC-
T ss_pred C--EEEEEEecC
Confidence 7 889999986
No 39
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=4.1e-11 Score=82.02 Aligned_cols=76 Identities=9% Similarity=0.124 Sum_probs=69.2
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.++|.+ .|...-+.++.|..++.+.|||||.|.+.++|.++.+ ++|..+.
T Consensus 15 V~nlp~~~t~~~l~~~F~~----------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~ 77 (99)
T 2dgs_A 15 VGGIPHNCGETELREYFKK----------------FGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIM 77 (99)
T ss_dssp EESCCSSCCHHHHHHHHSS----------------SSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSS
T ss_pred EeCCCCCCCHHHHHHHHHh----------------cCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEEC
Confidence 6899999999999999976 4788889999999999999999999999999999998 9999887
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+-+.
T Consensus 78 g--~~l~V~~a~~~~ 90 (99)
T 2dgs_A 78 G--KKVEVKRAEPRD 90 (99)
T ss_dssp S--CBCEEEECCCCC
T ss_pred C--eEEEEEECCCCc
Confidence 7 889999997654
No 40
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.20 E-value=3.3e-11 Score=80.52 Aligned_cols=74 Identities=12% Similarity=0.173 Sum_probs=68.4
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++..+ |....+.++.|..++.+.|||||.|.++++|.+.. .++|..+.
T Consensus 11 V~nlp~~~t~~~l~~~F~~~----------------G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~ 73 (89)
T 3ucg_A 11 VGNVDYGATAEELEAHFHGC----------------GSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFR 73 (89)
T ss_dssp EESCCTTCCHHHHHHHHGGG----------------CCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEET
T ss_pred EeCCCCCCCHHHHHHHHHhC----------------CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEEC
Confidence 68999999999999999874 68889999999999999999999999999999999 99999987
Q ss_pred CCCcEEEEEeccC
Q 040456 82 AQWLEFLTSACGD 94 (146)
Q Consensus 82 ~~~Kic~V~yAri 94 (146)
. +.+.|.+|+-
T Consensus 74 g--~~l~V~~a~~ 84 (89)
T 3ucg_A 74 G--RQIKVIPKRT 84 (89)
T ss_dssp T--EECEEEETTT
T ss_pred C--cEEEEEEccC
Confidence 7 8999999874
No 41
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=3.8e-11 Score=84.01 Aligned_cols=78 Identities=13% Similarity=0.180 Sum_probs=69.8
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccc--------eEEEceeccCCcceeEEEEeccChHHHHHHHH
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYD--------FLYLPMDFCHGANLGYAFVNFTTSVAAVRFAK 73 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yD--------FlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~ 73 (146)
|+|||...|+++|.++|..+ |... -+.++.|..++.+.|||||.|.++++|.++++
T Consensus 20 V~nLp~~~t~~~l~~~F~~~----------------G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 83 (113)
T 2cpe_A 20 VQGLNDSVTLDDLADFFKQC----------------GVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVE 83 (113)
T ss_dssp EECCCTTCCHHHHHHHHTTT----------------SCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHH
T ss_pred EcCCCCCCCHHHHHHHHHhc----------------CCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHH
Confidence 68999999999999999874 4555 58899999999999999999999999999999
Q ss_pred HhcCCcccCCCcEEEEEeccCcCh
Q 040456 74 AFNKSRWEAQWLEFLTSACGDQGM 97 (146)
Q Consensus 74 ~f~g~~w~~~~Kic~V~yAriQG~ 97 (146)
.++|..+.. +.+.|.||+-+..
T Consensus 84 ~l~g~~~~g--~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 84 WFDGKDFQG--SKLKVSLARKKPP 105 (113)
T ss_dssp HHTTCEETT--EECEEECSSCCCC
T ss_pred HcCCCccCC--CEEEEEECCCCCC
Confidence 999999887 8999999986643
No 42
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.20 E-value=5.9e-11 Score=82.46 Aligned_cols=77 Identities=16% Similarity=0.198 Sum_probs=70.8
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhc-----
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFN----- 76 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~----- 76 (146)
|+|||...|+++|.++|.. .|....+.++.|..++.+.|||||.|.+.++|.++++.++
T Consensus 20 V~nLp~~~t~~~l~~~F~~----------------~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~ 83 (111)
T 1x4h_A 20 IRNLSFDSEEEALGEVLQQ----------------FGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEG 83 (111)
T ss_dssp EESCCTTCCHHHHHHHHHT----------------TSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTT
T ss_pred EECCCCCCCHHHHHHHHHh----------------cCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhcccccc
Confidence 7899999999999999986 4788899999999999999999999999999999999999
Q ss_pred -CCcccCCCcEEEEEeccCcC
Q 040456 77 -KSRWEAQWLEFLTSACGDQG 96 (146)
Q Consensus 77 -g~~w~~~~Kic~V~yAriQG 96 (146)
|..+.. +.+.|.||+-+.
T Consensus 84 ~~~~~~g--~~l~v~~a~~~~ 102 (111)
T 1x4h_A 84 GGLKLDG--RQLKVDLAVTRD 102 (111)
T ss_dssp CCEESSS--CEEEEECCCCCC
T ss_pred CCcEEcC--EEEEEEECCCCc
Confidence 888876 899999997664
No 43
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=4.2e-11 Score=82.76 Aligned_cols=76 Identities=12% Similarity=0.159 Sum_probs=69.7
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.++|.. .|...-+.++.|..++.+.|||||.|.++++|.++.+. +|..+.
T Consensus 21 V~nlp~~~t~~~l~~~F~~----------------~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~ 83 (105)
T 2dh8_A 21 VGGLDWSTTQETLRSYFSQ----------------YGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD 83 (105)
T ss_dssp CBSCCTTCCHHHHHHHHHT----------------TSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEET
T ss_pred EeCCCCCCCHHHHHHHHHh----------------cCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeEC
Confidence 7899999999999999987 47888899999999999999999999999999999999 999887
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+.+.
T Consensus 84 g--~~l~V~~a~~~~ 96 (105)
T 2dh8_A 84 G--RNIDPKPCTPRG 96 (105)
T ss_dssp T--EEEBCCCSCCSS
T ss_pred C--EEEEEEEccCCC
Confidence 7 899999997654
No 44
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.20 E-value=6.9e-11 Score=85.46 Aligned_cols=76 Identities=16% Similarity=0.218 Sum_probs=70.4
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.++|..+ |...-+.++.|..++.+.|||||.|.++++|.++++.++|..+.
T Consensus 47 V~nLp~~~~~~~l~~~F~~~----------------G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 110 (139)
T 1u6f_A 47 VNYIPTTVDEVQLRQLFERY----------------GPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL 110 (139)
T ss_dssp EESCSTTCCHHHHHHHHHHH----------------SCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECS
T ss_pred EeCCCCCCCHHHHHHHHHhc----------------CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 78999999999999999875 67888999999999999999999999999999999999999987
Q ss_pred CCCcEEEEEeccCc
Q 040456 82 AQWLEFLTSACGDQ 95 (146)
Q Consensus 82 ~~~Kic~V~yAriQ 95 (146)
. +.+.|.||+-.
T Consensus 111 g--~~l~v~~a~~~ 122 (139)
T 1u6f_A 111 N--KRLKVALAASG 122 (139)
T ss_dssp S--CEEEEEESSCC
T ss_pred C--eEEEEEECCCC
Confidence 7 89999999754
No 45
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.19 E-value=6.2e-11 Score=79.79 Aligned_cols=75 Identities=17% Similarity=0.272 Sum_probs=66.5
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.++ |....+.++.| ++.+.|||||.|.++++|.++++.++|..+.
T Consensus 13 V~nlp~~~t~~~l~~~f~~~----------------G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 74 (92)
T 2dgv_A 13 VRNLPFDFTWKMLKDKFNEC----------------GHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLS 74 (92)
T ss_dssp ECSCCTTCCHHHHHHHHHTT----------------SCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBT
T ss_pred EeCCCCCCCHHHHHHHHHhc----------------CCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 78999999999999999874 67777777764 7889999999999999999999999999988
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+-+.
T Consensus 75 g--~~l~v~~a~~~~ 87 (92)
T 2dgv_A 75 G--REIDVRIDRNAS 87 (92)
T ss_dssp T--BCCCCEECSCCS
T ss_pred C--cEEEEEEcCCCC
Confidence 7 888899997654
No 46
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.19 E-value=2.7e-11 Score=82.61 Aligned_cols=75 Identities=13% Similarity=0.047 Sum_probs=66.9
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++..+ |...-+.++.|..++.+.|||||.|.++++|.++++.++|..|.
T Consensus 20 v~nLp~~~t~~~l~~~F~~~----------------G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 83 (98)
T 2cqp_A 20 VQNMPFTVSIDEILDFFYGY----------------QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG 83 (98)
T ss_dssp EESCCTTCCHHHHHHHTTTS----------------CCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEET
T ss_pred EeCCCCCCCHHHHHHHHHHc----------------CCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 78999999999999999764 45555668889899999999999999999999999999999988
Q ss_pred CCCcEEEEEeccC
Q 040456 82 AQWLEFLTSACGD 94 (146)
Q Consensus 82 ~~~Kic~V~yAri 94 (146)
. +.+.|.+|+-
T Consensus 84 g--~~l~V~~a~~ 94 (98)
T 2cqp_A 84 S--RKVKLVLGSG 94 (98)
T ss_dssp T--EECEEEESSC
T ss_pred C--eEEEEEEcCC
Confidence 7 8999999864
No 47
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=5.6e-11 Score=81.58 Aligned_cols=74 Identities=16% Similarity=0.220 Sum_probs=66.0
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.++|. .|--+.++.|..++.+.|||||.|.++++|.++++.++|..+.
T Consensus 20 V~nLp~~~t~~~l~~~F~-------------------~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 2fc8_A 20 VKGLSEDTTEETLKESFD-------------------GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 80 (102)
T ss_dssp EECCCTTCCHHHHHHTST-------------------TCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred EeCCCCccCHHHHHHHhc-------------------CCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 689999999999998764 3446788999999999999999999999999999999999987
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+-+.
T Consensus 81 g--~~l~V~~a~~~~ 93 (102)
T 2fc8_A 81 G--NKVTLDWAKPKG 93 (102)
T ss_dssp T--EECEEEECCCCC
T ss_pred C--eEEEEEEecCCC
Confidence 7 899999998654
No 48
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.19 E-value=5.4e-11 Score=87.89 Aligned_cols=77 Identities=12% Similarity=0.189 Sum_probs=70.8
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|.|||...|+++|.++|..+ |...-+.++.|..++.+.|||||.|.++++|.++++.++|..+.
T Consensus 44 V~nlp~~~t~~~l~~~F~~~----------------G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 107 (156)
T 1h2v_Z 44 VGNLSFYTTEEQIYELFSKS----------------GDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD 107 (156)
T ss_dssp EESCCTTCCHHHHHHHHGGG----------------SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET
T ss_pred EeCCCCCCCHHHHHHHHHhc----------------CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 78999999999999999874 67888999999999999999999999999999999999999997
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+-..
T Consensus 108 g--~~l~V~~a~~~~ 120 (156)
T 1h2v_Z 108 D--RIIRTDWDAGFK 120 (156)
T ss_dssp T--EECEEEEESCCC
T ss_pred C--eEEEEEECCCCC
Confidence 7 999999997543
No 49
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.19 E-value=3.2e-11 Score=86.64 Aligned_cols=73 Identities=15% Similarity=0.231 Sum_probs=67.2
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.++|..+ |....+.++.|..++.+.|||||.|.++++|.++.+.++|..+.
T Consensus 68 v~nlp~~~~~~~l~~~f~~~----------------G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 131 (140)
T 2ku7_A 68 VGGLAEEVDDKVLHAAFIPF----------------GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF 131 (140)
T ss_dssp EECCCTTCCHHHHHHHHGGG----------------SCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET
T ss_pred EEeCCCCCCHHHHHHHHHhc----------------CCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 78999999999999999874 68888999999999999999999999999999999999999887
Q ss_pred CCCcEEEEEec
Q 040456 82 AQWLEFLTSAC 92 (146)
Q Consensus 82 ~~~Kic~V~yA 92 (146)
. +.+.|.||
T Consensus 132 g--~~l~v~~A 140 (140)
T 2ku7_A 132 G--RTIRVNLA 140 (140)
T ss_dssp T--EEEEEEC-
T ss_pred C--EEEEEEeC
Confidence 6 88999887
No 50
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.18 E-value=5.6e-11 Score=87.49 Aligned_cols=77 Identities=18% Similarity=0.269 Sum_probs=71.3
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++..+ |....+.++.|..++.++|||||.|.+.++|.+..+.+||..+.
T Consensus 75 v~nl~~~~~~~~l~~~F~~~----------------G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 138 (158)
T 2kn4_A 75 VDNLTYRTSPDTLRRVFEKY----------------GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD 138 (158)
T ss_dssp EESCCTTCCHHHHHHHHHHH----------------SCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESS
T ss_pred EeCCCCCCCHHHHHHHHHhc----------------CCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 68999999999999999874 68889999999999999999999999999999999999999987
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+-+.
T Consensus 139 g--~~l~v~~a~~~~ 151 (158)
T 2kn4_A 139 G--RELRVQMARYGR 151 (158)
T ss_dssp S--SEEEEEEECCSS
T ss_pred C--eEEEEEECCCCC
Confidence 7 999999998664
No 51
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=5.6e-11 Score=83.25 Aligned_cols=77 Identities=17% Similarity=0.186 Sum_probs=68.0
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.. .|....+.++.|. ++.+.|||||.|.++++|.++.+.+||..+.
T Consensus 30 V~nlp~~~t~~~l~~~F~~----------------~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 92 (114)
T 1x5o_A 30 ISNLPLSMDEQELENMLKP----------------FGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIK 92 (114)
T ss_dssp EESCCTTCCHHHHHHTTTT----------------TSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCC
T ss_pred EeCCCCCCCHHHHHHHHHh----------------cCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEc
Confidence 6899999999999999976 4688889999998 9999999999999999999999999999985
Q ss_pred CCC------cEEEEEeccCc
Q 040456 82 AQW------LEFLTSACGDQ 95 (146)
Q Consensus 82 ~~~------Kic~V~yAriQ 95 (146)
... +.+.|.||...
T Consensus 93 ~~~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 93 TPPGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp CCTTSCCCSSCBEEEECCCS
T ss_pred CCccccCCCCceeEEccCCC
Confidence 422 78889998743
No 52
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.18 E-value=9.6e-11 Score=80.77 Aligned_cols=78 Identities=15% Similarity=0.164 Sum_probs=68.8
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.++|.. .|...-+.++.|. ++.+.|||||.|.++++|.+.++.++|..+.
T Consensus 20 v~nLp~~~t~~~l~~~F~~----------------~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 82 (105)
T 2dnh_A 20 VGMLNKQQSEEDVLRLFQP----------------FGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTM 82 (105)
T ss_dssp EESCCTTCCHHHHHHHHTT----------------TSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCC
T ss_pred EeCCCCCCCHHHHHHHHHh----------------cCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccC
Confidence 6899999999999999976 4678889999997 7899999999999999999999999999987
Q ss_pred CCC-cEEEEEeccCcC
Q 040456 82 AQW-LEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~-Kic~V~yAriQG 96 (146)
... +.+.|.||+-+.
T Consensus 83 gg~~~~l~V~~a~~~~ 98 (105)
T 2dnh_A 83 PGASSSLVVKFADTDK 98 (105)
T ss_dssp TTCSSCCEEEESCSSC
T ss_pred CCCCccEEEEECccCc
Confidence 533 678899997654
No 53
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.18 E-value=6.7e-11 Score=84.28 Aligned_cols=76 Identities=16% Similarity=0.203 Sum_probs=69.3
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.. .|...-+.++.|. ++.+.|||||.|.+.++|.++++.++|..+.
T Consensus 12 V~nLp~~~t~~~l~~~F~~----------------~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~ 74 (116)
T 2fy1_A 12 IGGLNRETNEKMLKAVFGK----------------HGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLH 74 (116)
T ss_dssp EECCTTTCCHHHHHHHHHT----------------SSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCS
T ss_pred EeCCCCCCCHHHHHHHHHh----------------cCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 6899999999999999987 4678889999998 8999999999999999999999999999987
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+-+.
T Consensus 75 g--~~l~V~~a~~~~ 87 (116)
T 2fy1_A 75 G--KAIKVEQAKKPS 87 (116)
T ss_dssp S--SBCEEEECCCSS
T ss_pred C--EEEEEEECCCCC
Confidence 7 889999997654
No 54
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.17 E-value=8.5e-11 Score=84.92 Aligned_cols=74 Identities=15% Similarity=0.191 Sum_probs=69.2
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|.++|.+++.. .|....+.++.|..++.+.|||||.|.++++|.+..+.+||..+.
T Consensus 92 v~nl~~~~t~~~l~~~f~~----------------~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 155 (166)
T 3md3_A 92 VGDLNVNVDDETLRNAFKD----------------FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN 155 (166)
T ss_dssp EESCCTTCCHHHHHHHHTT----------------STTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred ECCCCCCCCHHHHHHHHhc----------------cCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC
Confidence 6899999999999999976 478889999999999999999999999999999999999999987
Q ss_pred CCCcEEEEEecc
Q 040456 82 AQWLEFLTSACG 93 (146)
Q Consensus 82 ~~~Kic~V~yAr 93 (146)
. +.+.|.||+
T Consensus 156 g--~~i~v~~a~ 165 (166)
T 3md3_A 156 G--RPLRINWAA 165 (166)
T ss_dssp T--EECEEEESC
T ss_pred C--cEEEEEecC
Confidence 7 899999985
No 55
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.17 E-value=5.3e-11 Score=82.48 Aligned_cols=75 Identities=16% Similarity=0.278 Sum_probs=67.9
Q ss_pred CcCCCC------ccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHh
Q 040456 2 IKNIPN------RFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAF 75 (146)
Q Consensus 2 irNIPn------k~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f 75 (146)
|.|||. ..|+++|.+++.. .|...-+.+|.|-.|+.++|||||.|.++++|.++.+.+
T Consensus 11 V~nLp~v~~~~~~~~~~~L~~~F~~----------------~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~l 74 (100)
T 3ns6_A 11 VNGAPVIPSAKVPVLKKALTSLFSK----------------AGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSF 74 (100)
T ss_dssp EESCCCCBGGGHHHHHHHHHHHHHT----------------TSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHH
T ss_pred EeCCCcCChHHHHHHHHHHHHHHHh----------------cCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 689999 9999999999987 478889999999999999999999999999999999999
Q ss_pred cCCcccCCCcEEEEEecc
Q 040456 76 NKSRWEAQWLEFLTSACG 93 (146)
Q Consensus 76 ~g~~w~~~~Kic~V~yAr 93 (146)
||..+.. ++.+.|.+|+
T Consensus 75 ng~~~~g-~r~l~V~~a~ 91 (100)
T 3ns6_A 75 HGKRLDL-KHRLFLYTMK 91 (100)
T ss_dssp TTCBSSS-SCBCEEEESH
T ss_pred CCcccCC-CeEEEEEECc
Confidence 9999874 2577888885
No 56
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.16 E-value=8.7e-11 Score=83.28 Aligned_cols=75 Identities=20% Similarity=0.233 Sum_probs=66.8
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.++ |...-+.++.|- +.++|||||.|.++++|.++++.++|..+.
T Consensus 10 V~nLp~~~te~~L~~~F~~~----------------G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~ 71 (115)
T 4f25_A 10 IKNLDKSIDNKALYDTFSAF----------------GNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLN 71 (115)
T ss_dssp EESCCTTCCHHHHHHHHGGG----------------SCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred ECCCCCCCCHHHHHHHHhcc----------------CCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEEC
Confidence 68999999999999999874 678888999985 347999999999999999999999999988
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.+|+-+.
T Consensus 72 g--~~i~V~~a~~~~ 84 (115)
T 4f25_A 72 D--RKVFVGRFKSRK 84 (115)
T ss_dssp T--EECEEEESSCCC
T ss_pred C--EEEEEEECCCcc
Confidence 7 899999997654
No 57
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.16 E-value=5.7e-11 Score=86.47 Aligned_cols=76 Identities=13% Similarity=0.096 Sum_probs=70.1
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.++|.. .|...-+.++.|..++.+.|||||.|.++++|.++++.++|..+.
T Consensus 51 V~nLp~~~te~~L~~~F~~----------------~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~ 114 (129)
T 2kxn_B 51 VFGLSLYTTERDLREVFSK----------------YGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD 114 (129)
T ss_dssp EETCTTSCCHHHHHHHHTT----------------TSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred EeCCCCCCCHHHHHHHHHh----------------cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 7899999999999999976 478888999999999999999999999999999999999999987
Q ss_pred CCCcEEEEEeccCc
Q 040456 82 AQWLEFLTSACGDQ 95 (146)
Q Consensus 82 ~~~Kic~V~yAriQ 95 (146)
. +.+.|.||+-+
T Consensus 115 g--~~l~V~~a~~~ 126 (129)
T 2kxn_B 115 G--RRIRVDFSITK 126 (129)
T ss_dssp S--SCCEESCCSSS
T ss_pred C--EEEEEEEecCC
Confidence 7 88999999765
No 58
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.16 E-value=1.4e-10 Score=79.65 Aligned_cols=72 Identities=11% Similarity=0.149 Sum_probs=65.1
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.++ |...-+.++.| +.|||||.|.++++|.+..+.++|..+.
T Consensus 5 V~nLp~~~t~~~l~~~F~~~----------------G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~ 63 (101)
T 2hvz_A 5 VGNLGTGAGKGELERAFSYY----------------GPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVIC 63 (101)
T ss_dssp EECCCSSCSHHHHHHHHHHH----------------CCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSS
T ss_pred EeCCCCCCCHHHHHHHHHhc----------------CCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeEC
Confidence 68999999999999999875 57788888888 7899999999999999999999999887
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+-+.
T Consensus 64 g--~~l~V~~a~~~~ 76 (101)
T 2hvz_A 64 G--SRVRVELSTGMP 76 (101)
T ss_dssp S--CCCEEEESSSCC
T ss_pred C--cEEEEEEccCCC
Confidence 7 889999998765
No 59
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.16 E-value=1.4e-10 Score=82.69 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=68.9
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.. .|...-+.++.|. ++.+.|||||.|.+.++|.+..+.++|..+.
T Consensus 40 V~nlp~~~t~~~l~~~F~~----------------~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 102 (124)
T 2kt5_A 40 VSNLDFGVSDADIQELFAE----------------FGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLD 102 (124)
T ss_dssp EESCCSSCCHHHHHHHHHT----------------TSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESS
T ss_pred EeCCCCCCCHHHHHHHHHh----------------cCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 7899999999999999987 4688889999998 8999999999999999999999999999887
Q ss_pred CCCcEEEEEeccCc
Q 040456 82 AQWLEFLTSACGDQ 95 (146)
Q Consensus 82 ~~~Kic~V~yAriQ 95 (146)
. +.+.|.||...
T Consensus 103 g--~~l~V~~a~~~ 114 (124)
T 2kt5_A 103 G--RPMDIQLVASQ 114 (124)
T ss_dssp S--CEEEEEEECCT
T ss_pred C--cEEEEEEeCCC
Confidence 7 89999999754
No 60
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.15 E-value=5.5e-11 Score=80.47 Aligned_cols=74 Identities=15% Similarity=0.064 Sum_probs=65.9
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.++ |...-+.++.|-.++.+.|||||.|.++++|.++.+.+||..+.
T Consensus 20 V~nlp~~~t~~~l~~~F~~~----------------G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 83 (95)
T 2ek1_A 20 VQNMPFTVSIDEILDFFYGY----------------QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG 83 (95)
T ss_dssp EECCCTTCCHHHHHHHTTTS----------------CBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EeCCCCCCCHHHHHHHHHhc----------------CCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 78999999999999999764 45666778899899999999999999999999999999999987
Q ss_pred CCCcEEEEEecc
Q 040456 82 AQWLEFLTSACG 93 (146)
Q Consensus 82 ~~~Kic~V~yAr 93 (146)
. +.+.|.+|.
T Consensus 84 g--r~l~v~~a~ 93 (95)
T 2ek1_A 84 S--RKVKLSGPS 93 (95)
T ss_dssp T--EECEEECCC
T ss_pred C--cEEEEEecc
Confidence 7 888888774
No 61
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.15 E-value=2.4e-11 Score=81.70 Aligned_cols=76 Identities=8% Similarity=0.114 Sum_probs=66.8
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++..+ |...-+.++.|..++.+.|||||.|.+++ |.+..+.++|..+.
T Consensus 6 V~nLp~~~t~~~l~~~F~~~----------------G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~ 68 (90)
T 2ki2_A 6 VGNLVYSATSEQVKELFSQF----------------GKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFM 68 (90)
T ss_dssp EEEECTTSSHHHHTTTHHHH----------------TCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCS
T ss_pred ECCCCCCCCHHHHHHHHHhc----------------CCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEEC
Confidence 68999999999999999875 67888999999999999999999999999 99999999999988
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||.-+.
T Consensus 69 g--~~l~V~~a~~~~ 81 (90)
T 2ki2_A 69 G--RTIRVTEANPKK 81 (90)
T ss_dssp S--SSCSEEEC----
T ss_pred C--eEEEEEEcCCCC
Confidence 7 888889987654
No 62
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=1.6e-10 Score=79.53 Aligned_cols=75 Identities=16% Similarity=0.143 Sum_probs=67.0
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.++|..+ |....+.++.|-.+ +.|||||.|.++++|.++.+.++|..+.
T Consensus 20 V~nlp~~~t~~~l~~~F~~~----------------G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~ 81 (103)
T 2cqi_A 20 VGNLSRDVTEVLILQLFSQI----------------GPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKIL 81 (103)
T ss_dssp EESCCTTCCHHHHHHHHHHH----------------SCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred EeCCCccCCHHHHHHHHHhc----------------CCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcC
Confidence 78999999999999999875 67888889988443 7999999999999999999999999987
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+-+.
T Consensus 82 g--~~l~V~~a~~~~ 94 (103)
T 2cqi_A 82 G--KEVKVNWATTPS 94 (103)
T ss_dssp T--EEEEEEECCCTT
T ss_pred C--CeEEEEECCCCc
Confidence 7 999999998654
No 63
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.15 E-value=1.1e-10 Score=87.41 Aligned_cols=79 Identities=19% Similarity=0.255 Sum_probs=71.9
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|.|||...|+++|.++|..+ |....+.++.|..++.+.|||||.|.++++|..+++.+||..+.
T Consensus 77 V~nLp~~~t~~~L~~~F~~~----------------G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 140 (165)
T 1rk8_A 77 VTSIHEEAQEDEIQEKFCDY----------------GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM 140 (165)
T ss_dssp EESCCTTCCHHHHHHHHGGG----------------SCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EeCCCCCCCHHHHHHHhhcC----------------CCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 68999999999999999874 68889999999999999999999999999999999999999987
Q ss_pred CCCcEEEEEeccCcChH
Q 040456 82 AQWLEFLTSACGDQGMD 98 (146)
Q Consensus 82 ~~~Kic~V~yAriQG~~ 98 (146)
. +.+.|.||+.++..
T Consensus 141 g--~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 141 G--QTIQVDWCFVKGPK 155 (165)
T ss_dssp T--EECEEEESEECC--
T ss_pred C--EEEEEEEecCCCCC
Confidence 6 99999999887754
No 64
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=1.1e-10 Score=80.36 Aligned_cols=75 Identities=21% Similarity=0.266 Sum_probs=67.2
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.++|.. .|....+.++.|-.+ +.|||||.|.++++|.++++.++|..+.
T Consensus 20 V~nlp~~~t~~~l~~~f~~----------------~G~v~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~ 81 (103)
T 2cq3_A 20 VSNIPFRFRDPDLRQMFGQ----------------FGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVE 81 (103)
T ss_dssp EESCCTTCCHHHHHHHGGG----------------TSCEEEEEEECCTTT--TCCEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred EeCCCCCCCHHHHHHHHHh----------------cCCeEEEEEEecCCC--CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 7899999999999999976 468888999988653 8999999999999999999999999988
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+-+.
T Consensus 82 g--~~l~v~~a~~~~ 94 (103)
T 2cq3_A 82 G--RKIEVNNATARV 94 (103)
T ss_dssp T--EECEEEECCSSC
T ss_pred C--EEEEEEEcccCC
Confidence 7 999999997654
No 65
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=1.6e-10 Score=77.93 Aligned_cols=74 Identities=15% Similarity=0.220 Sum_probs=66.3
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.. . ...-+.++.| .++.+.|||||.|.++++|.++.+ ++|..+.
T Consensus 15 v~nLp~~~t~~~l~~~F~~----------------~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~ 75 (91)
T 2dgw_A 15 LRGAPFNVTEKNVMEFLAP----------------L-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMG 75 (91)
T ss_dssp EECCCSSCCHHHHHHHHTT----------------S-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEET
T ss_pred EECCCCCCCHHHHHHHHhh----------------C-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeC
Confidence 6899999999999999965 2 5667889999 899999999999999999999999 9999987
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.+|+-+.
T Consensus 76 g--r~i~v~~a~~~~ 88 (91)
T 2dgw_A 76 G--RYIEVFREKSGP 88 (91)
T ss_dssp T--EEEEEEEESSCC
T ss_pred C--cEEEEEECCcCC
Confidence 7 899999997653
No 66
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=6.7e-11 Score=83.24 Aligned_cols=76 Identities=17% Similarity=0.157 Sum_probs=68.6
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.++|.. .|....+.++.|-.++.++|||||.|.++++|.++++.+++ .+.
T Consensus 22 V~nlp~~~t~~~l~~~F~~----------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~ 84 (116)
T 2cqd_A 22 VGGLPYHTTDASLRKYFEG----------------FGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID 84 (116)
T ss_dssp EECCCSSCCHHHHHHHHHT----------------TSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET
T ss_pred EeCCCCCCCHHHHHHHHHh----------------CCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC
Confidence 7899999999999999986 47888999999999999999999999999999999999998 666
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||..+.
T Consensus 85 g--~~l~V~~a~~~~ 97 (116)
T 2cqd_A 85 G--RKANVNLAYLGA 97 (116)
T ss_dssp T--EECEEEESTTTC
T ss_pred C--EEEEEEEcccCC
Confidence 5 899999996553
No 67
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.14 E-value=5.4e-11 Score=77.26 Aligned_cols=72 Identities=11% Similarity=0.200 Sum_probs=63.0
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.++ |...-+.++.|..++.+.|||||.|.++++|.++.+. +|..+.
T Consensus 4 v~nLp~~~t~~~l~~~F~~~----------------G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~ 66 (75)
T 1iqt_A 4 VGGLSPDTPEEKIREYFGGF----------------GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVG 66 (75)
T ss_dssp ESCCCSSCCHHHHHHHHHHH----------------SCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBT
T ss_pred EeCCCCCCCHHHHHHHHHhc----------------CCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeEC
Confidence 68999999999999999885 5677788999999999999999999999999999986 777766
Q ss_pred CCCcEEEEEec
Q 040456 82 AQWLEFLTSAC 92 (146)
Q Consensus 82 ~~~Kic~V~yA 92 (146)
. +.+.|.+|
T Consensus 67 g--~~l~v~~a 75 (75)
T 1iqt_A 67 L--SKCEIKVA 75 (75)
T ss_dssp T--BCCCEEEC
T ss_pred C--EEEEEEEC
Confidence 5 66777665
No 68
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.14 E-value=1.4e-10 Score=77.50 Aligned_cols=72 Identities=14% Similarity=0.198 Sum_probs=63.9
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.. .|...-+.++.|..++.+.|||||.|.++++|.+..+. +|..+.
T Consensus 16 V~nlp~~~t~~~l~~~F~~----------------~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~ 78 (87)
T 3s7r_A 16 VGGLSWDTSKKDLKDYFTK----------------FGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLD 78 (87)
T ss_dssp EECCCTTCCHHHHHHHHTT----------------TSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEET
T ss_pred EeCCCCCCCHHHHHHHHHh----------------CCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEEC
Confidence 6899999999999999976 47888999999999999999999999999999999865 776665
Q ss_pred CCCcEEEEEec
Q 040456 82 AQWLEFLTSAC 92 (146)
Q Consensus 82 ~~~Kic~V~yA 92 (146)
. +.+.|.+|
T Consensus 79 g--~~i~v~~A 87 (87)
T 3s7r_A 79 G--RVIDPKKA 87 (87)
T ss_dssp T--EEEEEEEC
T ss_pred C--EEEEEEeC
Confidence 5 88888876
No 69
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=8.8e-11 Score=80.85 Aligned_cols=76 Identities=14% Similarity=0.135 Sum_probs=67.8
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCc-c
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSR-W 80 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~-w 80 (146)
|+|||...|+++|.+++... .|...-+.++.|. ++.+.|||||.|.++++|.++.+.++|.. +
T Consensus 14 V~nLp~~~t~~~l~~~F~~~---------------~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 77 (104)
T 2dhg_A 14 VGDLTPDVDDGMLYEFFVKV---------------YPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGL 77 (104)
T ss_dssp EECCCTTCCHHHHHHHHHHH---------------CTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSS
T ss_pred EeCCCCCCCHHHHHHHHHHh---------------CCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCccc
Confidence 78999999999999999872 2678889999998 99999999999999999999999999998 7
Q ss_pred cCCCcEEEEEeccCc
Q 040456 81 EAQWLEFLTSACGDQ 95 (146)
Q Consensus 81 ~~~~Kic~V~yAriQ 95 (146)
.. +.+.|.||+-+
T Consensus 78 ~g--~~l~v~~a~~~ 90 (104)
T 2dhg_A 78 GS--KPVRLSVAIPK 90 (104)
T ss_dssp SS--SCCCCCBCCCC
T ss_pred CC--EeEEEEEccCC
Confidence 76 77888888654
No 70
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=1.1e-11 Score=82.55 Aligned_cols=72 Identities=21% Similarity=0.220 Sum_probs=63.0
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|.|||...|+++|.+++.. .|....+.++.|..++.+.|||||.|.++++|.++.+.+||..+.
T Consensus 10 v~nlp~~~t~~~l~~~f~~----------------~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (85)
T 1x4e_A 10 IRGLQPGTTDQDLVKLCQP----------------YGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ 73 (85)
T ss_dssp EESCCTTCCHHHHHTTSTT----------------TSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred EeCCCCCCCHHHHHHHHHh----------------cCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe
Confidence 6899999999999999876 478888999999999999999999999999999999999999877
Q ss_pred CCCcEEEEEe
Q 040456 82 AQWLEFLTSA 91 (146)
Q Consensus 82 ~~~Kic~V~y 91 (146)
. +.+.+.|
T Consensus 74 g--~~~~~~~ 81 (85)
T 1x4e_A 74 A--QMAKQSG 81 (85)
T ss_dssp E--ESCCSSC
T ss_pred e--EEEeecC
Confidence 6 4444433
No 71
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.13 E-value=2e-10 Score=83.01 Aligned_cols=75 Identities=15% Similarity=0.226 Sum_probs=67.9
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++..+ |....+.++.|..++.+.|||||.|.++++|.+..+.+||..+.
T Consensus 93 v~nl~~~~t~~~l~~~f~~~----------------G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 156 (167)
T 1fxl_A 93 VSGLPKTMTQKELEQLFSQY----------------GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS 156 (167)
T ss_dssp EESCCTTCCHHHHHHHHGGG----------------SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred ECCCCCcCCHHHHHHHHHhc----------------CCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccC
Confidence 68999999999999999874 68888999999999999999999999999999999999999887
Q ss_pred CCCcEEEEEec
Q 040456 82 AQWLEFLTSAC 92 (146)
Q Consensus 82 ~~~Kic~V~yA 92 (146)
.-...+.|.||
T Consensus 157 g~~~~i~v~~A 167 (167)
T 1fxl_A 157 GATEPITVKFA 167 (167)
T ss_dssp TCSSCCEEEEC
T ss_pred CCccceEEEeC
Confidence 64456888887
No 72
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.13 E-value=1.5e-10 Score=87.14 Aligned_cols=80 Identities=11% Similarity=0.134 Sum_probs=72.6
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCC--ccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRS--EYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSR 79 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~--~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~ 79 (146)
|+|||...|+++|.++|..+ | ...-+.++.|-.++.++|||||.|.++++|.++++.++|..
T Consensus 60 VgnLp~~~te~~L~~~F~~~----------------G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~ 123 (156)
T 3n9u_C 60 VGSFSWWTTDQQLIQVIRSI----------------GVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKV 123 (156)
T ss_dssp EECCCTTCCHHHHHHHHHHT----------------TCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCE
T ss_pred EeCCCCCCCHHHHHHHHHHH----------------CCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCE
Confidence 68999999999999999874 6 78889999999999999999999999999999999999999
Q ss_pred ccCCCcEEEEEeccCcChHH
Q 040456 80 WEAQWLEFLTSACGDQGMDA 99 (146)
Q Consensus 80 w~~~~Kic~V~yAriQG~~a 99 (146)
+.. +.+.|.+|.-|....
T Consensus 124 ~~G--r~l~V~~a~~~~~~~ 141 (156)
T 3n9u_C 124 LNG--EKVDVRPATRQNLSQ 141 (156)
T ss_dssp ETT--EECEEEECCHHHHHH
T ss_pred ECC--eEeEEEEcCCCcchh
Confidence 887 999999998665443
No 73
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=4.3e-11 Score=83.83 Aligned_cols=77 Identities=17% Similarity=0.196 Sum_probs=66.3
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++..++ ...-+.++++..++.+.|||||.|.++++|.++++.++|..+.
T Consensus 30 V~nLp~~~t~~~l~~~f~~~G----------------~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 93 (115)
T 2cpx_A 30 LKNLSPRVTERDLVSLFARFQ----------------EKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLY 93 (115)
T ss_dssp EECCCTTCCHHHHHHHTHHHH----------------HSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCS
T ss_pred EeCCCCCCCHHHHHHHHHHhC----------------CccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 789999999999999998863 4444555666668999999999999999999999999999986
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+-+.
T Consensus 94 g--~~l~v~~a~~~~ 106 (115)
T 2cpx_A 94 G--KILVIEFGKNKK 106 (115)
T ss_dssp S--CBCEEEECCCCS
T ss_pred C--cEEEEEEccCCC
Confidence 6 889999997654
No 74
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=2.1e-10 Score=80.17 Aligned_cols=76 Identities=16% Similarity=0.097 Sum_probs=68.4
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.++|.. .|....+.++.|- ++.+.|||||.|.++++|.+.++.++|..+.
T Consensus 20 V~nlp~~~~~~~l~~~f~~----------------~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 82 (114)
T 2do0_A 20 VANLDYKVGWKKLKEVFSM----------------AGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLF 82 (114)
T ss_dssp EESCCTTCCHHHHHHHHTT----------------TSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EeCCCCCCCHHHHHHHHHh----------------cCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 7899999999999999976 4688889999996 6899999999999999999999999999987
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+-+.
T Consensus 83 g--~~l~v~~a~~~~ 95 (114)
T 2do0_A 83 D--RPMHVKMDERAL 95 (114)
T ss_dssp T--EECEEEECSCCC
T ss_pred C--CEEEEEEcccCC
Confidence 6 899999987643
No 75
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=1.5e-10 Score=79.50 Aligned_cols=74 Identities=22% Similarity=0.380 Sum_probs=64.9
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.+ |--+.++.| .++.+.|||||.|.++++|.++++.++|..+.
T Consensus 20 V~nLp~~~t~~~l~~~F~~-------------------~g~v~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (101)
T 2fc9_A 20 LSNLSYSATEETLQEVFEK-------------------ATFIKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIE 79 (101)
T ss_dssp EESCCTTCCHHHHHHHCSS-------------------CSEEECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEET
T ss_pred EeCCCCCCCHHHHHHHHHh-------------------CCEEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 7899999999999998754 334578888 78899999999999999999999999999988
Q ss_pred CCCcEEEEEeccCcCh
Q 040456 82 AQWLEFLTSACGDQGM 97 (146)
Q Consensus 82 ~~~Kic~V~yAriQG~ 97 (146)
. +.+.|.||+-++.
T Consensus 80 g--~~l~v~~a~~~~~ 93 (101)
T 2fc9_A 80 G--RAIRLELQGPRGS 93 (101)
T ss_dssp T--EEEEEEECSSCCC
T ss_pred C--eEEEEEEcCCCCC
Confidence 7 9999999987754
No 76
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.12 E-value=1.3e-10 Score=80.09 Aligned_cols=75 Identities=13% Similarity=0.144 Sum_probs=67.3
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.. .+ ..-+.++.|..++.+.|||||.|.++++|.++. .++|..+.
T Consensus 20 V~nLp~~~t~~~l~~~F~~----------------~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 81 (103)
T 2dng_A 20 VGNLPFNTVQGDIDAIFKD----------------LS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLG 81 (103)
T ss_dssp EESCCTTCCHHHHHHHTTT----------------SC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred EeCCCCCCCHHHHHHHHHh----------------CC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeEC
Confidence 6899999999999999865 23 777899999999999999999999999999999 89999987
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+-+.
T Consensus 82 g--~~l~V~~a~~~~ 94 (103)
T 2dng_A 82 D--RSLRVDIAEGRK 94 (103)
T ss_dssp T--EECEEEECCCCC
T ss_pred C--eEEEEEEecCCC
Confidence 7 899999997654
No 77
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.12 E-value=5.4e-11 Score=87.09 Aligned_cols=78 Identities=18% Similarity=0.255 Sum_probs=71.5
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.++|..+ |...-+.++.|..++.+.|||||.|.++++|.+.++.++|..+.
T Consensus 52 V~nLp~~~te~~L~~~F~~~----------------G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~ 115 (135)
T 2lea_A 52 VDNLTYRTSPDTLRRVFEKY----------------GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD 115 (135)
T ss_dssp EECCCSSCHHHHHHHHHGGG----------------SCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSS
T ss_pred EeCCCCCCCHHHHHHHHHhc----------------CCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 78999999999999999874 67888999999999999999999999999999999999999987
Q ss_pred CCCcEEEEEeccCcCh
Q 040456 82 AQWLEFLTSACGDQGM 97 (146)
Q Consensus 82 ~~~Kic~V~yAriQG~ 97 (146)
. +.+.|.||+-+..
T Consensus 116 g--~~l~V~~a~~~~~ 129 (135)
T 2lea_A 116 G--RELRVQMARYGRP 129 (135)
T ss_dssp S--SCCEEEECCCCCC
T ss_pred C--EEEEEEECCCCCC
Confidence 7 8899999987654
No 78
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.11 E-value=3e-10 Score=82.05 Aligned_cols=78 Identities=19% Similarity=0.326 Sum_probs=70.6
Q ss_pred CCcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcc
Q 040456 1 MIKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRW 80 (146)
Q Consensus 1 MirNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w 80 (146)
.|+|||...|+++|.+++.. .|...-+.++.|..++.+.|||||.|.++++|.++.+.++|..+
T Consensus 6 ~v~nlp~~~~~~~l~~~f~~----------------~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~ 69 (167)
T 1fxl_A 6 IVNYLPQNMTQEEFRSLFGS----------------IGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 69 (167)
T ss_dssp EEESCCTTCCHHHHHHHHHT----------------TSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred EEcCCCCCCCHHHHHHHHHh----------------cCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 37899999999999999987 46888899999999999999999999999999999999999988
Q ss_pred cCCCcEEEEEeccCcC
Q 040456 81 EAQWLEFLTSACGDQG 96 (146)
Q Consensus 81 ~~~~Kic~V~yAriQG 96 (146)
.. +.+.|.||+.+.
T Consensus 70 ~g--~~l~v~~~~~~~ 83 (167)
T 1fxl_A 70 QT--KTIKVSYARPSS 83 (167)
T ss_dssp TT--EECEEEECCCCC
T ss_pred CC--ceEEEEecCCCc
Confidence 77 888999987543
No 79
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.11 E-value=2.1e-10 Score=83.37 Aligned_cols=77 Identities=21% Similarity=0.345 Sum_probs=70.7
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.+ .|...-+.++.|..++.+.|||||.|.++++|.++.+.++|..+.
T Consensus 8 v~nlp~~~~~~~l~~~f~~----------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 71 (168)
T 1b7f_A 8 VNYLPQDMTDRELYALFRA----------------IGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVR 71 (168)
T ss_dssp EECCCTTCCHHHHHHHHHT----------------TSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EeCCCCCCCHHHHHHHHHh----------------cCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeC
Confidence 7899999999999999987 468888999999999999999999999999999999999999987
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+.++
T Consensus 72 g--~~l~v~~~~~~~ 84 (168)
T 1b7f_A 72 N--KRLKVSYARPGG 84 (168)
T ss_dssp T--EECEEEECCCCS
T ss_pred C--cEEEEEecCCCc
Confidence 6 888999998655
No 80
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.11 E-value=8.3e-11 Score=76.56 Aligned_cols=72 Identities=11% Similarity=0.110 Sum_probs=64.0
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.+ .|....+.++.|..++.+.|||||.|.++++|.+..+.++ ..+.
T Consensus 5 v~nlp~~~t~~~l~~~F~~----------------~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~ 67 (77)
T 1uaw_A 5 IGGLSWQTTQEGLREYFGQ----------------FGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELD 67 (77)
T ss_dssp EESCCSSCCSHHHHHHHTT----------------TSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCS
T ss_pred EeCCCCCCCHHHHHHHHHh----------------cCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccC
Confidence 6899999999999999976 3678889999999999999999999999999999999888 7666
Q ss_pred CCCcEEEEEec
Q 040456 82 AQWLEFLTSAC 92 (146)
Q Consensus 82 ~~~Kic~V~yA 92 (146)
. +.+.|.+|
T Consensus 68 g--~~l~v~~a 76 (77)
T 1uaw_A 68 S--KTIDPKVA 76 (77)
T ss_dssp S--CCCEEEEC
T ss_pred C--EEEEEEec
Confidence 6 67777776
No 81
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=1.1e-10 Score=80.75 Aligned_cols=75 Identities=9% Similarity=0.195 Sum_probs=67.8
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccC-CcceeEEEEeccChHHHHHHHHHhcCCcc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCH-GANLGYAFVNFTTSVAAVRFAKAFNKSRW 80 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~-~~N~GYAFVNf~~~~~a~~f~~~f~g~~w 80 (146)
|+|||...|+++|.++|.. .| ..-+.++.|..+ +.+.|||||.|.++++|.++. .++|..+
T Consensus 20 V~nlp~~~t~~~l~~~F~~----------------~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~ 81 (104)
T 1wi8_A 20 LGNLPYDVTEESIKEFFRG----------------LN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL 81 (104)
T ss_dssp EESCCSSCCHHHHHHHTTT----------------SC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEE
T ss_pred EeCCCCcCCHHHHHHHHHH----------------CC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEe
Confidence 6899999999999999976 35 788999999988 999999999999999999999 9999998
Q ss_pred cCCCcEEEEEeccCcC
Q 040456 81 EAQWLEFLTSACGDQG 96 (146)
Q Consensus 81 ~~~~Kic~V~yAriQG 96 (146)
.. +.+.|.||+-+.
T Consensus 82 ~g--~~l~V~~a~~~~ 95 (104)
T 1wi8_A 82 GN--KRIRVDVADQAQ 95 (104)
T ss_dssp TT--EECEEEECCCCC
T ss_pred CC--cEEEEEEccCCC
Confidence 77 899999997653
No 82
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=1.5e-10 Score=80.31 Aligned_cols=77 Identities=18% Similarity=0.166 Sum_probs=67.4
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCc-cceEEEc-eeccCCcceeEEEEeccChHHHHHHHHHhc--C
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSE-YDFLYLP-MDFCHGANLGYAFVNFTTSVAAVRFAKAFN--K 77 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~-yDFlYLP-iDf~~~~N~GYAFVNf~~~~~a~~f~~~f~--g 77 (146)
|.|||...|+++|.++|.++ |. ..-+.++ .|-.++.+.|||||.|.++++|..+.+.++ +
T Consensus 13 V~nLp~~~t~~~l~~~f~~~----------------G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~ 76 (109)
T 2dis_A 13 IGGIPKMKKREEILEEIAKV----------------TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGR 76 (109)
T ss_dssp EECCCTTSCHHHHHHHHHHH----------------STTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCC
T ss_pred EeCCCCcCCHHHHHHHHHHh----------------cCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCC
Confidence 68999999999999999885 44 7777887 888889999999999999999999999996 5
Q ss_pred CcccCCCcEEEEEeccCcC
Q 040456 78 SRWEAQWLEFLTSACGDQG 96 (146)
Q Consensus 78 ~~w~~~~Kic~V~yAriQG 96 (146)
..+.. +.+.|.||+.+.
T Consensus 77 ~~~~g--~~l~V~~a~~~~ 93 (109)
T 2dis_A 77 IQLWG--HQIAVDWAEPEI 93 (109)
T ss_dssp SCBTT--BCCEEEESCSSC
T ss_pred ceecC--CeEEEEEcCCCC
Confidence 77776 888999998664
No 83
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=1.4e-10 Score=81.60 Aligned_cols=76 Identities=11% Similarity=0.070 Sum_probs=69.2
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.++|.. .|...-+.++.|..++.+.|||||.|.++++|.++.+. +|..+.
T Consensus 32 V~nLp~~~te~~l~~~F~~----------------~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~ 94 (116)
T 1x4b_A 32 IGGLSFETTEESLRNYYEQ----------------WGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSID 94 (116)
T ss_dssp EECCTTCCCHHHHHHHHTS----------------SCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEET
T ss_pred EeCCCCCCCHHHHHHHHHh----------------cCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEEC
Confidence 6899999999999999976 46888899999999999999999999999999999998 998887
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+.+.
T Consensus 95 g--~~l~V~~a~~~~ 107 (116)
T 1x4b_A 95 G--RVVEPKRAVARE 107 (116)
T ss_dssp T--EEEEEECCSSCC
T ss_pred C--EEEEEEECCCCc
Confidence 7 999999998764
No 84
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.11 E-value=2.2e-10 Score=83.73 Aligned_cols=74 Identities=18% Similarity=0.280 Sum_probs=68.6
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.. .|....+.++.|..++.+.|||||.|.++++|.+..+.+||..+.
T Consensus 99 v~nlp~~~t~~~l~~~f~~----------------~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 162 (172)
T 2g4b_A 99 IGGLPNYLNDDQVKELLTS----------------FGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG 162 (172)
T ss_dssp EECCCTTCCHHHHHHHHHT----------------TSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEET
T ss_pred EEcCCCcCCHHHHHHHHHh----------------cCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEEC
Confidence 7899999999999999986 478899999999999999999999999999999999999999988
Q ss_pred CCCcEEEEEecc
Q 040456 82 AQWLEFLTSACG 93 (146)
Q Consensus 82 ~~~Kic~V~yAr 93 (146)
. +.+.|.||.
T Consensus 163 g--~~l~V~~As 172 (172)
T 2g4b_A 163 D--KKLLVQRAS 172 (172)
T ss_dssp T--EECEEEECC
T ss_pred C--eEEEEEeCC
Confidence 7 889999883
No 85
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=2.5e-10 Score=78.22 Aligned_cols=74 Identities=16% Similarity=0.173 Sum_probs=65.6
Q ss_pred CcCCCCccCHHHHH----HHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcC
Q 040456 2 IKNIPNRFKRHDLL----QILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNK 77 (146)
Q Consensus 2 irNIPnk~t~~~L~----~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g 77 (146)
|.|||...|+++|. +++.++ |...-+.++.|..+ .|||||.|.++++|.+.++.+||
T Consensus 14 V~nL~~~~~~~~l~~~l~~~F~~~----------------G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g 74 (96)
T 2dgx_A 14 VSNIDYRLSRKELQQLLQEAFARH----------------GKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHR 74 (96)
T ss_dssp EESCCTTSCHHHHHHHHHHHHHHH----------------SCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTT
T ss_pred EECCCCCCCHHHHHHHHHHhcccc----------------CcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCC
Confidence 68999999999999 666653 67888999999876 89999999999999999999999
Q ss_pred CcccCCCcEEEEEeccCcC
Q 040456 78 SRWEAQWLEFLTSACGDQG 96 (146)
Q Consensus 78 ~~w~~~~Kic~V~yAriQG 96 (146)
..+.. +.+.|.||+-+.
T Consensus 75 ~~~~g--r~l~V~~a~~~~ 91 (96)
T 2dgx_A 75 YKIGS--KKILVSLATGAS 91 (96)
T ss_dssp EEETT--EEEEEEECCCSS
T ss_pred CEECC--eEEEEEEcCCCC
Confidence 99887 999999997653
No 86
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.09 E-value=3.2e-10 Score=82.41 Aligned_cols=75 Identities=19% Similarity=0.156 Sum_probs=68.0
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.. .|....+.++.|..++.+.|||||.|.++++|.+..+.+||..+.
T Consensus 94 v~nl~~~~t~~~l~~~f~~----------------~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 157 (168)
T 1b7f_A 94 VTNLPRTITDDQLDTIFGK----------------YGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPE 157 (168)
T ss_dssp EESCCTTCCHHHHHHHHTS----------------SSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred EeCCCCCCCHHHHHHhhhc----------------CCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEec
Confidence 6899999999999999976 478899999999999999999999999999999999999999886
Q ss_pred CCCcEEEEEec
Q 040456 82 AQWLEFLTSAC 92 (146)
Q Consensus 82 ~~~Kic~V~yA 92 (146)
.-.+.+.|.||
T Consensus 158 g~~~~l~V~~A 168 (168)
T 1b7f_A 158 GGSQPLSVRLA 168 (168)
T ss_dssp TCSSCCEEEEC
T ss_pred CCCeEEEEEeC
Confidence 54477788887
No 87
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.08 E-value=6.6e-11 Score=85.52 Aligned_cols=75 Identities=13% Similarity=0.158 Sum_probs=67.7
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccce--EEEceeccCCcceeEEEEeccChHHHHHHHHHhcCC-
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDF--LYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKS- 78 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDF--lYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~- 78 (146)
|+|||...|+++|.++|..+ |...- +.++.|..++.++|||||.|.++ +|.+.++.++|.
T Consensus 28 V~nL~~~~te~~L~~~F~~~----------------G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~ 90 (131)
T 2m2b_A 28 LRNLNPHSTMDSILGALAPY----------------AVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALH 90 (131)
T ss_dssp ECSCCTTCCSHHHHHHHGGG----------------CCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCC
T ss_pred EeCCCCCCCHHHHHHHHHHh----------------CCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCC
Confidence 78999999999999999874 56666 89999999999999999999999 999999999999
Q ss_pred ---cccCCCcEEEEEeccCc
Q 040456 79 ---RWEAQWLEFLTSACGDQ 95 (146)
Q Consensus 79 ---~w~~~~Kic~V~yAriQ 95 (146)
.+.. +.+.|.||+-+
T Consensus 91 ~~~~~~g--r~l~V~~a~~~ 108 (131)
T 2m2b_A 91 PPLTIDG--KTINVEFAKGS 108 (131)
T ss_dssp CSCCGGG--CCCCCEECCCS
T ss_pred CCccCCC--EEEEEEECCCC
Confidence 7766 88899999764
No 88
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.08 E-value=2.7e-10 Score=80.86 Aligned_cols=75 Identities=13% Similarity=0.182 Sum_probs=68.6
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.++|.. .|...-+.++.|-.++.+.|||||.|.+.++|.+.. .++|..+.
T Consensus 41 V~nlp~~~t~~~l~~~F~~----------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 103 (124)
T 2jwn_A 41 VGNVDYGSTAQDLEAHFSS----------------CGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFR 103 (124)
T ss_dssp EEEECTTCCHHHHHHHHHT----------------TSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEET
T ss_pred EeCCCCCCCHHHHHHHHHh----------------cCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeEC
Confidence 6899999999999999987 468888999999999999999999999999999999 89999987
Q ss_pred CCCcEEEEEeccCc
Q 040456 82 AQWLEFLTSACGDQ 95 (146)
Q Consensus 82 ~~~Kic~V~yAriQ 95 (146)
. +.+.|.||+-+
T Consensus 104 g--~~l~V~~a~~~ 115 (124)
T 2jwn_A 104 G--RTIKVLPKRTN 115 (124)
T ss_dssp T--EECEEEESSCC
T ss_pred C--eEEEEEECCCC
Confidence 7 89999999754
No 89
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=4.6e-10 Score=77.20 Aligned_cols=75 Identities=16% Similarity=0.234 Sum_probs=65.8
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++..+ |....+.++.|..++.+.|||||.|.++++|.+..+ ++..+.
T Consensus 20 v~nlp~~~t~~~l~~~F~~~----------------G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~ 81 (103)
T 2cqg_A 20 VLGLPWKTTEQDLKEYFSTF----------------GEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMID 81 (103)
T ss_dssp EESCCSSCCHHHHHHHHGGG----------------SCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEET
T ss_pred EEcCCCcCCHHHHHHHHHhc----------------CCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeC
Confidence 78999999999999999874 688889999999999999999999999999999988 465555
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+-+.
T Consensus 82 g--~~l~v~~a~~~~ 94 (103)
T 2cqg_A 82 G--RWCDCKLPNSKQ 94 (103)
T ss_dssp T--EEEEEECCCTTC
T ss_pred C--eEEEEEecCCCC
Confidence 5 899999997653
No 90
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=2.1e-10 Score=80.41 Aligned_cols=76 Identities=13% Similarity=0.152 Sum_probs=69.3
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|.|||...|+++|.++|.. .|...-+.++.|-.++.+.|||||.|.++++|.+++ .++|..+.
T Consensus 30 V~nlp~~~t~~~l~~~F~~----------------~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 92 (114)
T 2cq4_A 30 CMQLAARIRPRDLEDFFSA----------------VGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLL 92 (114)
T ss_dssp EESCCTTCCHHHHHHHHTT----------------TSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEET
T ss_pred EeCCCCCCCHHHHHHHHHh----------------CCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeC
Confidence 7899999999999999976 468888999999999999999999999999999999 99999987
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+-+.
T Consensus 93 g--~~l~V~~a~~~~ 105 (114)
T 2cq4_A 93 G--VPIIVQASQAEK 105 (114)
T ss_dssp T--EEEEEEEHHHHH
T ss_pred C--eEEEEEecCCCc
Confidence 7 999999997543
No 91
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.07 E-value=3.7e-10 Score=85.33 Aligned_cols=76 Identities=11% Similarity=0.192 Sum_probs=70.3
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.. .|....+.++.|..++.+.|||||.|.+.++|.+..+.+||..+.
T Consensus 130 v~nlp~~~t~~~l~~~f~~----------------~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~ 193 (216)
T 2qfj_A 130 VASVHQDLSDDDIKSVFEA----------------FGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLG 193 (216)
T ss_dssp EECCCTTCCHHHHHHHHTT----------------SSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred EeCCCCcCCHHHHHHHHhc----------------cCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeC
Confidence 6899999999999999976 478999999999999999999999999999999999999999987
Q ss_pred CCCcEEEEEeccCc
Q 040456 82 AQWLEFLTSACGDQ 95 (146)
Q Consensus 82 ~~~Kic~V~yAriQ 95 (146)
. +.+.|.||+..
T Consensus 194 g--~~i~V~~a~~~ 205 (216)
T 2qfj_A 194 G--QYLRVGKAVTP 205 (216)
T ss_dssp S--SBCEEEECSSC
T ss_pred C--cEEEEEEecCC
Confidence 6 88999999754
No 92
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=2.8e-10 Score=79.97 Aligned_cols=74 Identities=22% Similarity=0.293 Sum_probs=66.0
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.. .|....+.++.|-. .+.|||||.|.+.++|.++.+.++|..+.
T Consensus 34 V~nLp~~~te~~l~~~F~~----------------~G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~ 95 (109)
T 2err_A 34 VSNIPFRFRDPDLRQMFGQ----------------FGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVE 95 (109)
T ss_dssp EESCCTTCCHHHHHHHGGG----------------TCCCSCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTTCEET
T ss_pred EECCCCcCCHHHHHHHHHh----------------cCCEEEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 6899999999999999986 46778889998843 48999999999999999999999999988
Q ss_pred CCCcEEEEEeccCc
Q 040456 82 AQWLEFLTSACGDQ 95 (146)
Q Consensus 82 ~~~Kic~V~yAriQ 95 (146)
. +.+.|.||+-+
T Consensus 96 g--~~l~V~~a~~~ 107 (109)
T 2err_A 96 G--RKIEVNNATAR 107 (109)
T ss_dssp T--EECEEEECCCS
T ss_pred C--EEEEEEECCCC
Confidence 7 99999999765
No 93
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=3.1e-10 Score=78.98 Aligned_cols=74 Identities=12% Similarity=0.151 Sum_probs=64.5
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.++|.++ |...-+.++.+ +.+.|||||.|.++++|.++++.++|..+.
T Consensus 27 V~nLp~~~t~~~l~~~F~~~----------------G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 87 (109)
T 1x4a_A 27 VGNLPPDIRTKDIEDVFYKY----------------GAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYD 87 (109)
T ss_dssp EESCCTTCCHHHHHHHHGGG----------------SCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEET
T ss_pred EeCCCCCCCHHHHHHHHHhc----------------CCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 68999999999999999874 56777777654 447999999999999999999999999887
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+-+.
T Consensus 88 g--~~l~V~~a~~~~ 100 (109)
T 1x4a_A 88 G--YRLRVEFPRSGR 100 (109)
T ss_dssp T--EECEEECCCCCC
T ss_pred C--eEEEEEEcccCC
Confidence 6 899999997654
No 94
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=3.7e-10 Score=82.36 Aligned_cols=91 Identities=13% Similarity=0.141 Sum_probs=74.8
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||-..|.++|++++..+|. +.+..+-+.|+.| .++.+.|||||.|.++++|.+.++. ++..+.
T Consensus 28 V~nLp~~~te~dl~~~F~~~g~------------v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~ 93 (123)
T 2dha_A 28 MRGLPFTATAEEVVAFFGQHCP------------ITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLG 93 (123)
T ss_dssp ECSCCTTCCHHHHHHHHHTTSC------------CTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESS
T ss_pred EeCCCCCCCHHHHHHHHHhhCC------------ccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeC
Confidence 7999999999999999998651 2356788999999 6899999999999999999999987 887766
Q ss_pred CCCcEEEEEeccCcChHHHHHHhcccc
Q 040456 82 AQWLEFLTSACGDQGMDALKIHFQEKC 108 (146)
Q Consensus 82 ~~~Kic~V~yAriQG~~al~~hf~ns~ 108 (146)
. +.++|..|..+-....+++.++++
T Consensus 94 g--R~i~V~~a~~~e~~~~~~~~~~~p 118 (123)
T 2dha_A 94 K--RYIELFRSTAAEVQQVLNRFSSAS 118 (123)
T ss_dssp S--CEECCEEECHHHHHHHHHHHTTCS
T ss_pred C--eEEEEEECCHHHHHHHHHhccCCC
Confidence 5 788898887666555566655554
No 95
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.04 E-value=5.8e-10 Score=76.10 Aligned_cols=73 Identities=7% Similarity=-0.011 Sum_probs=61.8
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|.|||...|+++|.+++.++ |...-+.++.+ .|||||.|.++++|.++++.+||..+.
T Consensus 22 V~nlp~~~t~~~l~~~F~~~----------------G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (97)
T 1why_A 22 VGGLGPNTSLAALAREFDRF----------------GSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLG 79 (97)
T ss_dssp EECCCSSCCHHHHHHHHHTT----------------SCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred EeCCCCCCCHHHHHHHHHhc----------------CCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 68999999999999999874 56666666643 799999999999999999999999998
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
...+.+.|.||+-+.
T Consensus 80 ~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 80 GPDRRLRVDFAKSGP 94 (97)
T ss_dssp SSSCBCEEEECCCCC
T ss_pred CCCcEEEEEECCCCC
Confidence 212889999998764
No 96
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.04 E-value=2.2e-10 Score=77.73 Aligned_cols=76 Identities=14% Similarity=0.116 Sum_probs=64.3
Q ss_pred CcCCCCccCHHHHH----HHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcC
Q 040456 2 IKNIPNRFKRHDLL----QILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNK 77 (146)
Q Consensus 2 irNIPnk~t~~~L~----~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g 77 (146)
|+|||...|+++|. +++.. .|...-+.++ .++.+.|||||.|.++++|.+..+.++|
T Consensus 13 V~nLp~~~~~~~l~~~l~~~f~~----------------~G~i~~v~i~---~~~~~~g~afV~f~~~~~A~~A~~~l~g 73 (97)
T 1nu4_A 13 INNLNEKIKKDELKKSLHAIFSR----------------FGQILDILVS---RSLKMRGQAFVIFKEVSSATNALRSMQG 73 (97)
T ss_dssp EESCCTTSCHHHHHHHHHHHHGG----------------GSCEEEEECC---HHHHHTTCEEEEESSHHHHHHHHHHHTT
T ss_pred EeCCCCCCCHHHHHHHHHHHHHh----------------CCCEEEEEEE---cCCCcCcEEEEEeCCHHHHHHHHHHhCC
Confidence 78999999999999 66554 3566667666 4677889999999999999999999999
Q ss_pred CcccCCCcEEEEEeccCcChH
Q 040456 78 SRWEAQWLEFLTSACGDQGMD 98 (146)
Q Consensus 78 ~~w~~~~Kic~V~yAriQG~~ 98 (146)
..+.. +.+.|.||+-+...
T Consensus 74 ~~~~g--~~l~v~~a~~~~~~ 92 (97)
T 1nu4_A 74 FPFYD--KPMRIQYAKTDSDI 92 (97)
T ss_dssp CEETT--EECEEEECSSCCTH
T ss_pred CEECC--cEEEEEEccCCCcc
Confidence 99876 99999999887643
No 97
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=2.4e-10 Score=80.69 Aligned_cols=75 Identities=23% Similarity=0.324 Sum_probs=66.5
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCcc-ceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEY-DFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRW 80 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~y-DFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w 80 (146)
|+|||...|+++|.+++..+ |.. +-+.|+.|. ++.+.|||||.|.+.++|.++++. +|..+
T Consensus 20 V~nLp~~~t~~~l~~~F~~~----------------g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~ 81 (114)
T 2cpy_A 20 ITNIPFSITKMDVLQFLEGI----------------PVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKL 81 (114)
T ss_dssp EESCCTTSCHHHHHHHTTTS----------------CCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEE
T ss_pred EeCcCCcCCHHHHHHHHHhC----------------CCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCcc
Confidence 78999999999999999763 566 678999998 899999999999999999999988 99888
Q ss_pred cCCCcEEEEEeccCcC
Q 040456 81 EAQWLEFLTSACGDQG 96 (146)
Q Consensus 81 ~~~~Kic~V~yAriQG 96 (146)
.. +.+.|.+|.-+-
T Consensus 82 ~g--r~i~v~~a~~~~ 95 (114)
T 2cpy_A 82 NG--REAFVHVVTLED 95 (114)
T ss_dssp TT--EEEEEEEECHHH
T ss_pred CC--eEEEEEECCHHH
Confidence 77 899999997554
No 98
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.02 E-value=6.6e-10 Score=82.90 Aligned_cols=78 Identities=17% Similarity=0.246 Sum_probs=71.5
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.. .|....+.++.|..++.+.|||||.|.++++|.+..+.++|..+.
T Consensus 119 v~nl~~~~~~~~l~~~f~~----------------~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 182 (198)
T 2yh0_A 119 IGGLPNYLNDDQVKELLTS----------------FGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG 182 (198)
T ss_dssp EECCCTTCCHHHHHHHHHT----------------BSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEET
T ss_pred EeCCCCCCCHHHHHHHHHH----------------cCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 6899999999999999987 368889999999999999999999999999999999999999987
Q ss_pred CCCcEEEEEeccCcCh
Q 040456 82 AQWLEFLTSACGDQGM 97 (146)
Q Consensus 82 ~~~Kic~V~yAriQG~ 97 (146)
. +.+.|.||+..++
T Consensus 183 g--~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 183 D--KKLLVQRASVGAK 196 (198)
T ss_dssp T--EECEEEESCCCCC
T ss_pred C--EEEEEEECCCCCC
Confidence 6 8999999987654
No 99
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.02 E-value=4.9e-10 Score=79.95 Aligned_cols=86 Identities=14% Similarity=0.072 Sum_probs=70.1
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++..++ ..+...-+.|+.|.. +.++|||||.|.++++|.++.+ ++|..+.
T Consensus 22 V~nLp~~~te~~l~~~F~~~G-------------~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~ 86 (118)
T 2db1_A 22 LRGLPWSCSIEDVQNFLSDCT-------------IHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMG 86 (118)
T ss_dssp EESCCTTCCHHHHHHHTTTSC-------------BTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEET
T ss_pred EeCCCCCCCHHHHHHHHHHcC-------------CccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeEC
Confidence 789999999999999997642 112277889999977 8899999999999999999999 8998877
Q ss_pred CCCcEEEEEeccCcChHHHHHHh
Q 040456 82 AQWLEFLTSACGDQGMDALKIHF 104 (146)
Q Consensus 82 ~~~Kic~V~yAriQG~~al~~hf 104 (146)
. +.++|.+|.-+-.+...++-
T Consensus 87 g--r~i~V~~a~~~~~~~~~~~~ 107 (118)
T 2db1_A 87 H--RYIEVFKSHRTEMDWVLKHS 107 (118)
T ss_dssp T--EEEEEEEECHHHHHHHHHTT
T ss_pred C--eEEEEEECCHHHHHHHHHHh
Confidence 6 89999999755444444443
No 100
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=6.2e-10 Score=77.60 Aligned_cols=71 Identities=15% Similarity=0.123 Sum_probs=63.8
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++..+ |....+.++.| .|||||.|.++++|.++++.++|..+.
T Consensus 30 V~nl~~~~t~~~l~~~F~~~----------------G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~ 87 (109)
T 1x4g_A 30 CGGIASGLTDQLMRQTFSPF----------------GQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIE 87 (109)
T ss_dssp EECCSSCCCHHHHHHHHHHH----------------SCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EeCCCCCCCHHHHHHHHHhc----------------CCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 68999999999999999875 57777777776 799999999999999999999999988
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+-+.
T Consensus 88 g--~~l~v~~a~~~~ 100 (109)
T 1x4g_A 88 G--HVVKCYWGKESP 100 (109)
T ss_dssp T--EECEEECCCCCC
T ss_pred C--cEEEEEecCCCC
Confidence 7 999999998765
No 101
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.02 E-value=1.4e-10 Score=79.61 Aligned_cols=75 Identities=12% Similarity=0.093 Sum_probs=64.6
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|.|||...|+++|.++|.+++.. .- .++.|..++.+.|||||.|.++++|.++.+ ++|..+.
T Consensus 22 V~nLp~~~t~~~l~~~F~~~G~v----------------~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~ 83 (101)
T 1fj7_A 22 IGNLNPNKSVAELKVAISELFAK----------------ND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVF 83 (101)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHH----------------HT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBT
T ss_pred EeCCCCCCCHHHHHHHHHHhCCc----------------ce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEEC
Confidence 68999999999999999987531 11 467888889999999999999999999998 9999988
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+-+.
T Consensus 84 g--~~l~V~~a~~~~ 96 (101)
T 1fj7_A 84 G--NEIKLEKPKGRD 96 (101)
T ss_dssp T--BCCEEECCSCCC
T ss_pred C--cEEEEEEcCCCC
Confidence 7 889999997653
No 102
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.02 E-value=4.9e-10 Score=76.74 Aligned_cols=71 Identities=10% Similarity=0.245 Sum_probs=62.1
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.++ |...-+.++.| .|||||.|.++++|.++++.++|..+.
T Consensus 20 V~nlp~~~t~~~l~~~F~~~----------------G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~ 77 (99)
T 2cpj_A 20 VGNLPPDITEEEMRKLFEKY----------------GKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLR 77 (99)
T ss_dssp EESCCTTCCHHHHHHHTSTT----------------CCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBT
T ss_pred EeCCCCCCCHHHHHHHHhhc----------------CCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 78999999999999999764 56777777743 799999999999999999999999987
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+-+.
T Consensus 78 g--~~l~v~~a~~~~ 90 (99)
T 2cpj_A 78 G--KQLRVRFACHSA 90 (99)
T ss_dssp T--BCCEEEESSCCS
T ss_pred C--ceEEEEEcCCCC
Confidence 7 889999997653
No 103
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.01 E-value=2.8e-10 Score=80.03 Aligned_cols=77 Identities=12% Similarity=0.127 Sum_probs=66.9
Q ss_pred CcCCCCccCHHHHH---HHHHhhchhhhhhcccCCCCCCCccceEEEceeccC---CcceeEEEEeccChHHHHHHHHHh
Q 040456 2 IKNIPNRFKRHDLL---QILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCH---GANLGYAFVNFTTSVAAVRFAKAF 75 (146)
Q Consensus 2 irNIPnk~t~~~L~---~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~---~~N~GYAFVNf~~~~~a~~f~~~f 75 (146)
|.|||...|+++|+ +++.+ .|...-+.++.|-.+ +.+.|||||.|.++++|.++++.+
T Consensus 20 V~nLp~~~~~~~l~~~~~~F~~----------------~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~l 83 (111)
T 2cpi_A 20 VVGLSQRLADPEVLKRPEYFGK----------------FGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCV 83 (111)
T ss_dssp EEEECTTTCCHHHHHSTTTTTT----------------TSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHH
T ss_pred EECCCCCCCHHHHHHHHHHhhc----------------cCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHh
Confidence 67999999999999 77765 477888899888764 466799999999999999999999
Q ss_pred cCCcccCCCcEEEEEeccCcC
Q 040456 76 NKSRWEAQWLEFLTSACGDQG 96 (146)
Q Consensus 76 ~g~~w~~~~Kic~V~yAriQG 96 (146)
||..+.. +.+.|.||+.+.
T Consensus 84 ng~~~~g--r~l~V~~a~~k~ 102 (111)
T 2cpi_A 84 NNVVVDG--RTLKASLGTTKY 102 (111)
T ss_dssp TTEEETT--EEEEEESCCCCS
T ss_pred CCCEECC--EEEEEEeccccc
Confidence 9999877 999999997664
No 104
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=1.9e-10 Score=82.21 Aligned_cols=83 Identities=12% Similarity=0.027 Sum_probs=68.1
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.++|..+ |...-+.+++|-.++.+.|||||.|.++++|.++.+ ++|..+.
T Consensus 30 V~nLp~~~te~~l~~~F~~~----------------G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~ 92 (124)
T 1wel_A 30 LKGLPFEAENKHVIDFFKKL----------------DIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMG 92 (124)
T ss_dssp EECCCTTCCHHHHHHHSCSS----------------CBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCST
T ss_pred EeCCCCCCCHHHHHHHHHhc----------------CCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeEC
Confidence 68999999999999999764 444445566777899999999999999999999999 9999887
Q ss_pred CCCcEEEEEeccCcChHHHHHH
Q 040456 82 AQWLEFLTSACGDQGMDALKIH 103 (146)
Q Consensus 82 ~~~Kic~V~yAriQG~~al~~h 103 (146)
. +.+.|.+|.-+.....++.
T Consensus 93 g--r~i~V~~a~~~~~~~~~~~ 112 (124)
T 1wel_A 93 N--RFIQVHPITKKGMLEKIDM 112 (124)
T ss_dssp T--SCBEEEEECHHHHHHHHHH
T ss_pred C--cEEEEEECCHHHHHHHHHH
Confidence 7 8899999977654333333
No 105
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.01 E-value=8.3e-10 Score=74.33 Aligned_cols=70 Identities=13% Similarity=0.221 Sum_probs=61.3
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++..+ |...-+.++ .|||||.|.++++|.++.+.++|..+.
T Consensus 13 V~nlp~~~t~~~l~~~F~~~----------------G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~ 68 (90)
T 2dnq_A 13 IGNLPREATEQEIRSLFEQY----------------GKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLH 68 (90)
T ss_dssp EESCCSSCCHHHHHHHHHTS----------------SCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred EeCCCCCCCHHHHHHHHHhC----------------CCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccC
Confidence 68999999999999999874 566677776 689999999999999999999999887
Q ss_pred CCCcEEEEEeccCcCh
Q 040456 82 AQWLEFLTSACGDQGM 97 (146)
Q Consensus 82 ~~~Kic~V~yAriQG~ 97 (146)
. +.+.|.||+-+..
T Consensus 69 g--~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 69 G--VNINVEASKNKSK 82 (90)
T ss_dssp S--CBCEEECSSCCCC
T ss_pred C--cEEEEEECCCCCC
Confidence 7 8899999987653
No 106
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=5.6e-10 Score=78.50 Aligned_cols=72 Identities=18% Similarity=0.255 Sum_probs=64.6
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.. .|...-+.+|.|.. +.+.|||||.|.++++|..+.. .+|..+.
T Consensus 16 V~~Lp~~~te~~L~~~F~~----------------~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~ 77 (103)
T 1s79_A 16 IKGFPTDATLDDIKEWLED----------------KGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYK 77 (103)
T ss_dssp EECCCTTCCHHHHHHHHHT----------------SSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCT
T ss_pred EECCCCCCCHHHHHHHHhh----------------cCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEEC
Confidence 6899999999999999987 47889999999987 9999999999999999999998 8898887
Q ss_pred CCCcEEEEEecc
Q 040456 82 AQWLEFLTSACG 93 (146)
Q Consensus 82 ~~~Kic~V~yAr 93 (146)
. +.+.|.+|.
T Consensus 78 g--r~l~V~~~~ 87 (103)
T 1s79_A 78 E--TDLLILFKD 87 (103)
T ss_dssp T--TTCEEEEHH
T ss_pred C--EEEEEEEch
Confidence 6 778888774
No 107
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.56 E-value=3.9e-11 Score=84.61 Aligned_cols=85 Identities=12% Similarity=0.088 Sum_probs=68.3
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++..++..... .......+.++.|..++.+.|||||.|.++++|.++++.++|..+.
T Consensus 12 V~nLp~~~t~~~l~~~F~~~G~i~~~--------~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 12 VQGLGENVTIESVADYFKQIGIIKTN--------KKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 78999999999999999875311000 0011122889999999999999999999999999999999999988
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+-+.
T Consensus 84 g--~~l~V~~a~~~~ 96 (116)
T 2lcw_A 84 G--NPIKVSFATRRA 96 (116)
Confidence 7 889999997653
No 108
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.00 E-value=9.2e-10 Score=84.19 Aligned_cols=76 Identities=16% Similarity=0.175 Sum_probs=69.4
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|.|||...|+++|.++|.+ .|...-+.++.|. ++.+.|||||.|.++++|..+++.++|..+.
T Consensus 93 V~nLp~~~te~~L~~~F~~----------------~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~ 155 (177)
T 2f3j_A 93 VSNLDFGVSDADIQELFAE----------------FGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLD 155 (177)
T ss_dssp EECCCSCCCHHHHHHHHHH----------------TSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCS
T ss_pred EeCCCCCCCHHHHHHHHHh----------------cCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 6899999999999999987 4688889999998 8999999999999999999999999999887
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||....
T Consensus 156 G--r~l~V~~a~~~~ 168 (177)
T 2f3j_A 156 G--RPMDIQLVASQI 168 (177)
T ss_dssp S--SBCEEEEESSGG
T ss_pred C--EEEEEEEecCCC
Confidence 7 889999997653
No 109
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.00 E-value=5.1e-10 Score=75.95 Aligned_cols=73 Identities=15% Similarity=0.266 Sum_probs=61.8
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++..+ |....+ ..++.+.|||||.|.++++|.+..+.++|..+.
T Consensus 21 V~nL~~~~t~~~l~~~F~~~----------------g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 79 (96)
T 1fjc_A 21 AKNLSFNITEDELKEVFEDA----------------LEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID 79 (96)
T ss_dssp EESCCSSCCHHHHHHHHCSE----------------EEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEET
T ss_pred EeCCCCCCCHHHHHHHHhhC----------------CcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 68999999999999998653 222222 467889999999999999999999999999987
Q ss_pred CCCcEEEEEeccCcCh
Q 040456 82 AQWLEFLTSACGDQGM 97 (146)
Q Consensus 82 ~~~Kic~V~yAriQG~ 97 (146)
. +.+.|.||+-++.
T Consensus 80 g--~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 80 G--RSVSLYYTGEKGG 93 (96)
T ss_dssp T--EEEEEEECSSSCC
T ss_pred C--eEEEEEEcCCCCC
Confidence 7 8999999987653
No 110
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.99 E-value=5.9e-10 Score=76.41 Aligned_cols=69 Identities=19% Similarity=0.196 Sum_probs=60.3
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.++ |....+.++ .+.|||||.|.+.++|.++++.++|..|.
T Consensus 32 V~nlp~~~~~~~l~~~f~~~----------------G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 89 (101)
T 2la4_A 32 IGNIPHFATEADLIPLFQNF----------------GFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQ 89 (101)
T ss_dssp EESCCTTCCHHHHHHHHHTT----------------SCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred EcCCCcccCHHHHHHHHHhC----------------CCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 68999999999999999874 566666665 46899999999999999999999999998
Q ss_pred CCCcEEEEEeccC
Q 040456 82 AQWLEFLTSACGD 94 (146)
Q Consensus 82 ~~~Kic~V~yAri 94 (146)
. +.+.|.||+-
T Consensus 90 g--~~l~V~~a~~ 100 (101)
T 2la4_A 90 G--RNLRTGWGKE 100 (101)
T ss_dssp T--EECCCCBCCC
T ss_pred C--eEEEEEeccC
Confidence 7 8888999874
No 111
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.99 E-value=1e-09 Score=77.30 Aligned_cols=70 Identities=13% Similarity=0.207 Sum_probs=61.8
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++..+ |...-+.++ .|||||.|.+.++|.++.+.++|..+.
T Consensus 36 V~nLp~~~t~~~L~~~F~~~----------------G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (108)
T 2jvo_A 36 VRPFPLDVQESELNEIFGPF----------------GPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFA 91 (108)
T ss_dssp ECSSCTTCCHHHHHHHHTTT----------------SCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred EECCCCCCCHHHHHHHHHhc----------------CCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 78999999999999999764 566677766 799999999999999999999999987
Q ss_pred CCCcEEEEEeccCcCh
Q 040456 82 AQWLEFLTSACGDQGM 97 (146)
Q Consensus 82 ~~~Kic~V~yAriQG~ 97 (146)
. +.+.|.||+-+.+
T Consensus 92 g--~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 92 N--QPLEVVYSKLPAK 105 (108)
T ss_dssp T--EECEEESCSCCC-
T ss_pred C--eEEEEEEecCCCC
Confidence 6 9999999987754
No 112
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=1.1e-09 Score=74.81 Aligned_cols=72 Identities=19% Similarity=0.216 Sum_probs=60.4
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|.|||...|+++|.+++.++ |... +-++. +.+.|||||.|.++++|.+..+.+||..+.
T Consensus 24 V~nL~~~~t~~~l~~~F~~~----------------G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 82 (97)
T 2e5j_A 24 VGNLPRDARVSDLKRALREL----------------GSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLG 82 (97)
T ss_dssp EECCCTTCCHHHHHHHHHHT----------------TCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSS
T ss_pred EeCCCCcCcHHHHHHHHHhc----------------CCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 68999999999999999875 3333 23333 367899999999999999999999999987
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+-+.
T Consensus 83 g--~~l~V~~a~~~~ 95 (97)
T 2e5j_A 83 T--DTLRVALARQQR 95 (97)
T ss_dssp S--SCCEEEECCCCC
T ss_pred C--cEEEEEEcCCCC
Confidence 7 889999998764
No 113
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.98 E-value=2e-09 Score=78.41 Aligned_cols=78 Identities=15% Similarity=0.237 Sum_probs=68.1
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCC--cceeEEEEeccChHHHHHHHHHhcCCc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHG--ANLGYAFVNFTTSVAAVRFAKAFNKSR 79 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~--~N~GYAFVNf~~~~~a~~f~~~f~g~~ 79 (146)
|+|||...|+++|.+++.. .|...-+.++.|..++ .+.|||||.|.++++|.++.+.++|..
T Consensus 8 V~nLp~~~te~~l~~~F~~----------------~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~ 71 (175)
T 3nmr_A 8 VGQVPRTWSEKDLRELFEQ----------------YGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMK 71 (175)
T ss_dssp EESCCTTCCHHHHHHHHHT----------------TSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTC
T ss_pred EeCCCCCCCHHHHHHHHHh----------------CCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcE
Confidence 7899999999999999987 4688899999999887 999999999999999999999999988
Q ss_pred ccCCC-cEEEEEeccCc
Q 040456 80 WEAQW-LEFLTSACGDQ 95 (146)
Q Consensus 80 w~~~~-Kic~V~yAriQ 95 (146)
+.... +...+.++..+
T Consensus 72 ~~~~~~~~~~~~~~~~~ 88 (175)
T 3nmr_A 72 VLPGMHHPIQMKPADSE 88 (175)
T ss_dssp CCTTCSSCCEEEECGGG
T ss_pred EccCCccceEEcccccc
Confidence 76443 67777777543
No 114
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=9.5e-10 Score=74.32 Aligned_cols=70 Identities=19% Similarity=0.217 Sum_probs=59.1
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCc-cceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcC-Cc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSE-YDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNK-SR 79 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~-yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g-~~ 79 (146)
|.|||...|+++|.+++..+ |. .+.+.+ .+.|||||.|.++++|.++++.+|| ..
T Consensus 13 V~nLp~~~t~~~l~~~F~~~----------------G~vv~~~~~-------~~~g~afV~f~~~~~A~~A~~~l~g~~~ 69 (93)
T 2cqh_A 13 IGNLSPAVTADDLRQLFGDR----------------KLPLAGQVL-------LKSGYAFVDYPDQNWAIRAIETLSGKVE 69 (93)
T ss_dssp EECCCTTCCHHHHHHHHHHT----------------TCCCSSCEE-------EETTEEEECCSCHHHHHHHHHHHTTTCE
T ss_pred EeCCCCCCCHHHHHHHHHHc----------------CCceEEEEE-------cCCCEEEEEECCHHHHHHHHHHccCCee
Confidence 68999999999999999875 33 444444 3589999999999999999999999 88
Q ss_pred ccCCCcEEEEEeccCcC
Q 040456 80 WEAQWLEFLTSACGDQG 96 (146)
Q Consensus 80 w~~~~Kic~V~yAriQG 96 (146)
+.. +.+.|.||+-+.
T Consensus 70 ~~g--~~l~v~~a~~~~ 84 (93)
T 2cqh_A 70 LHG--KIMEVDYSVSKK 84 (93)
T ss_dssp ETT--EECEEEECCCCC
T ss_pred ECC--EEEEEEEccCcc
Confidence 876 899999997654
No 115
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.98 E-value=1.8e-09 Score=78.65 Aligned_cols=74 Identities=19% Similarity=0.207 Sum_probs=65.0
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++..+ |....+.++.|- ++.+.|||||.|.++++|.+..+.+||..+.
T Consensus 100 v~nl~~~~t~~~l~~~F~~~----------------G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 162 (175)
T 3nmr_A 100 IGMISKKCTENDIRVMFSSF----------------GQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTM 162 (175)
T ss_dssp EESCCTTCCHHHHHHHHGGG----------------SCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCC
T ss_pred EcCCCCcCCHHHHHHHHHhC----------------CCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCccc
Confidence 68999999999999999874 678889999984 6889999999999999999999999998765
Q ss_pred CC-CcEEEEEec
Q 040456 82 AQ-WLEFLTSAC 92 (146)
Q Consensus 82 ~~-~Kic~V~yA 92 (146)
.. .+.+.|.||
T Consensus 163 ~g~~~~l~V~~a 174 (175)
T 3nmr_A 163 EGCSSPMVVKFA 174 (175)
T ss_dssp TTCSSCCEEEEC
T ss_pred CCCCCCeEEEec
Confidence 43 277888887
No 116
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.98 E-value=7.3e-10 Score=87.90 Aligned_cols=80 Identities=13% Similarity=0.163 Sum_probs=72.3
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCC--ccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRS--EYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSR 79 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~--~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~ 79 (146)
|+|||...|+++|.++|.. .| ...-+.|+.|-.++.++|||||.|.+.++|.+.++.+||..
T Consensus 73 VgnL~~~~te~~L~~~F~~----------------~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~ 136 (229)
T 3q2s_C 73 IGNLTWWTTDEDLTEAVHS----------------LGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRE 136 (229)
T ss_dssp EESCCTTCCHHHHHHHHHT----------------TTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSC
T ss_pred EeCCCCCCCHHHHHHHHHH----------------HCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCe
Confidence 7899999999999999976 36 78889999999999999999999999999999999999999
Q ss_pred ccCCCcEEEEEeccCcChHH
Q 040456 80 WEAQWLEFLTSACGDQGMDA 99 (146)
Q Consensus 80 w~~~~Kic~V~yAriQG~~a 99 (146)
+.. +.+.|.+|+-|....
T Consensus 137 ~~G--r~l~V~~a~~~~~~~ 154 (229)
T 3q2s_C 137 LHG--QNPVVTPVNKQFLSQ 154 (229)
T ss_dssp BTT--BCCEEEECCHHHHHH
T ss_pred ECC--EEeEEEECCCCccch
Confidence 887 899999998665443
No 117
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.98 E-value=1.1e-09 Score=76.66 Aligned_cols=72 Identities=11% Similarity=0.152 Sum_probs=63.9
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|.++|.+++.. .|...-+.++.| +.+.|||||.|.++++|.++.+.+||..+.
T Consensus 13 V~nlp~~~t~~~l~~~F~~----------------~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 73 (115)
T 3lqv_A 13 IRNLPYKITAEEMYDIFGK----------------YGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVS 73 (115)
T ss_dssp EESCCTTCCHHHHHHHHHT----------------TSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred EeCCCCCCCHHHHHHHHHh----------------cCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 7899999999999999986 467788888876 345899999999999999999999999987
Q ss_pred CCCcEEEEEeccC
Q 040456 82 AQWLEFLTSACGD 94 (146)
Q Consensus 82 ~~~Kic~V~yAri 94 (146)
. +.+.|.||+.
T Consensus 74 g--~~l~v~~a~~ 84 (115)
T 3lqv_A 74 N--RYLVVLYYNA 84 (115)
T ss_dssp S--CBCEEEECCH
T ss_pred C--eEEEEEEecC
Confidence 7 8899999974
No 118
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=1.5e-09 Score=74.27 Aligned_cols=72 Identities=17% Similarity=0.138 Sum_probs=61.1
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.++|..++ .|....+.++ .|||||.|.++++|.++++.++|..+.
T Consensus 20 V~nLp~~~t~~~l~~~F~~~g--------------~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (99)
T 2cpd_A 20 VRNLMLSTSEEMIEKEFNNIK--------------PGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLD 77 (99)
T ss_dssp EESCCTTCCHHHHHHHHHTTS--------------TTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEET
T ss_pred EeCCCCCCCHHHHHHHHHhcC--------------CcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 689999999999999998752 1455555544 689999999999999999999999987
Q ss_pred CCCcEEEEEeccCcCh
Q 040456 82 AQWLEFLTSACGDQGM 97 (146)
Q Consensus 82 ~~~Kic~V~yAriQG~ 97 (146)
. +.+.|.||+-+.+
T Consensus 78 g--~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 78 G--SPIEVTLAKPVDK 91 (99)
T ss_dssp T--EEEEEECCCCCCC
T ss_pred C--cEEEEEECCCCCC
Confidence 6 9999999987653
No 119
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.98 E-value=9e-10 Score=80.10 Aligned_cols=74 Identities=12% Similarity=0.156 Sum_probs=66.7
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.. .|....+.++.|..++.+.|||||.|.++++|.+..+ .+|..+.
T Consensus 92 V~nlp~~~t~~~l~~~F~~----------------~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~ 154 (167)
T 2cjk_A 92 VGGIGPDVRPKEFEEFFSQ----------------WGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFK 154 (167)
T ss_dssp EEEECTTCCHHHHHHHHHT----------------TSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSS
T ss_pred ECCCCCCCCHHHHHHHHHh----------------CccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeC
Confidence 6899999999999999986 4788899999999999999999999999999999987 7888776
Q ss_pred CCCcEEEEEeccC
Q 040456 82 AQWLEFLTSACGD 94 (146)
Q Consensus 82 ~~~Kic~V~yAri 94 (146)
. +.+.|.||..
T Consensus 155 g--~~i~V~~a~p 165 (167)
T 2cjk_A 155 D--RKIEIKRAEP 165 (167)
T ss_dssp S--SCEEEEECCC
T ss_pred C--eEEEEeecCC
Confidence 6 8899999864
No 120
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.98 E-value=7.7e-10 Score=77.05 Aligned_cols=72 Identities=17% Similarity=0.294 Sum_probs=63.9
Q ss_pred CcCCCCcc------CHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHh
Q 040456 2 IKNIPNRF------KRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAF 75 (146)
Q Consensus 2 irNIPnk~------t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f 75 (146)
|.|||... |+++|.+++..+ |...-+.+| -.++.+.|||||.|.++++|.+..+.+
T Consensus 20 V~nLp~~~~~~~~~t~~~l~~~F~~~----------------G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l 81 (105)
T 2nlw_A 20 VDNVPQVGPDRLEKLKNVIHKIFSKF----------------GKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNA 81 (105)
T ss_dssp EESCCCCCTTTTTHHHHHHHHHHGGG----------------SCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHC
T ss_pred EeCCCcchhhhhHHHHHHHHHHHhcC----------------CCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 67999999 789999999874 677778888 368899999999999999999999999
Q ss_pred cCCcccCCCc-EEEEEecc
Q 040456 76 NKSRWEAQWL-EFLTSACG 93 (146)
Q Consensus 76 ~g~~w~~~~K-ic~V~yAr 93 (146)
||..+.. + .+.|.+|.
T Consensus 82 ~g~~~~g--~~~l~V~~a~ 98 (105)
T 2nlw_A 82 DGYKLDK--QHTFRVNLFT 98 (105)
T ss_dssp SSEECST--TCEEEEECSC
T ss_pred CCcccCC--CceEEEEEcc
Confidence 9999887 7 89999985
No 121
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.97 E-value=6.7e-10 Score=82.26 Aligned_cols=76 Identities=13% Similarity=0.068 Sum_probs=66.7
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCc---cceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCC
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSE---YDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKS 78 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~---yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~ 78 (146)
|+|||...|+++|.+++..+ |. ..-+.|+.|.. +.++|||||.|.++++|.++.+ ++|.
T Consensus 49 VgnLp~~~te~dL~~~F~~~----------------G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~ 110 (136)
T 2hgl_A 49 LRGLPWSCSVEDVQNFLSDC----------------TIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRE 110 (136)
T ss_dssp EESCCTTCCHHHHHHHTTTC----------------CCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEE
T ss_pred EeCCCCCCCHHHHHHHHHHh----------------CCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCC
Confidence 78999999999999999764 45 77899999987 9999999999999999999999 9998
Q ss_pred cccCCCcEEEEEeccCcCh
Q 040456 79 RWEAQWLEFLTSACGDQGM 97 (146)
Q Consensus 79 ~w~~~~Kic~V~yAriQG~ 97 (146)
.+.. +.++|.+|.-+-.
T Consensus 111 ~l~g--r~i~V~~a~~~e~ 127 (136)
T 2hgl_A 111 SMGH--RYIEVFKSHRTEM 127 (136)
T ss_dssp ESSS--SEEEEEECCHHHH
T ss_pred EECC--EEEEEEECChHHH
Confidence 8776 8899999864433
No 122
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.97 E-value=9.3e-10 Score=77.36 Aligned_cols=76 Identities=11% Similarity=0.092 Sum_probs=66.7
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.. .|...-+.++.|..++.+.|||||.|.+.++|.++.+.. |..+.
T Consensus 30 V~nLp~~~te~~L~~~F~~----------------~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~ 92 (109)
T 2rs2_A 30 IGGLSWQTTQEGLREYFGQ----------------FGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELD 92 (109)
T ss_dssp EESCCTTCCHHHHHHHHTT----------------TSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEET
T ss_pred EeCCCCCCCHHHHHHHHHc----------------cCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCC
Confidence 6899999999999999976 478888999999999999999999999999999999875 46655
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.+|..+.
T Consensus 93 g--~~l~V~~a~~~~ 105 (109)
T 2rs2_A 93 S--KTIDPKVAFPRR 105 (109)
T ss_dssp T--EEEEEEECCCCC
T ss_pred C--EEEEEEEccCCC
Confidence 5 889999987553
No 123
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.97 E-value=1.2e-09 Score=81.26 Aligned_cols=76 Identities=13% Similarity=0.191 Sum_probs=66.6
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.. .|....+.++.|..++.+.|||||.|.++++|.+.... +|..+.
T Consensus 109 V~nLp~~~t~~~l~~~F~~----------------~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~ 171 (196)
T 1l3k_A 109 VGGIKEDTEEHHLRDYFEQ----------------YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVN 171 (196)
T ss_dssp EECCTTTCCHHHHHHHHTT----------------TSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEET
T ss_pred EeCCCCCCCHHHHHHHHhc----------------CCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEEC
Confidence 6899999999999999976 47889999999999999999999999999999999987 788777
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||..+.
T Consensus 172 G--~~i~v~~a~~k~ 184 (196)
T 1l3k_A 172 G--HNCEVRKALSKQ 184 (196)
T ss_dssp T--EECEEEECC---
T ss_pred C--EEEEEEecCChh
Confidence 6 899999996543
No 124
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.96 E-value=1.3e-09 Score=82.27 Aligned_cols=77 Identities=14% Similarity=0.151 Sum_probs=66.7
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.++|..+ |...-+.++.|..++.+.|||||.|.++++|.++.+.++|..+.
T Consensus 33 V~nLp~~~t~~~l~~~f~~~----------------G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 96 (216)
T 2qfj_A 33 VGSIYYELGEDTIRQAFAPF----------------GPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLG 96 (216)
T ss_dssp EECCCTTCCHHHHHHHHGGG----------------SCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC
T ss_pred EECCCCCCCHHHHHHHHHhC----------------CCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeC
Confidence 78999999999999999874 68888999999999999999999999999999999999999887
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.++.-+.
T Consensus 97 g--~~l~v~~~~~~~ 109 (216)
T 2qfj_A 97 G--RNIKVGRPSNIG 109 (216)
T ss_dssp ---CCCEEECCSCCG
T ss_pred C--eeEEEecCCCcc
Confidence 7 777788876554
No 125
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.96 E-value=2.5e-10 Score=78.74 Aligned_cols=73 Identities=10% Similarity=0.186 Sum_probs=65.3
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceec-cCCcceeEEEEeccChHHHHHHHHHhcCCcc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDF-CHGANLGYAFVNFTTSVAAVRFAKAFNKSRW 80 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf-~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w 80 (146)
|+|||...|+++|.+++.. .| ..-+.++.|. .++.+.|||||.|.+.++|.++. .++|..+
T Consensus 24 V~nLp~~~t~~~l~~~F~~----------------~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~ 85 (100)
T 2j76_E 24 LGNLPYDVTEESIKEFFRG----------------LN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL 85 (100)
T ss_dssp ESCCSSCCSSSHHHHHSCS----------------SC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCB
T ss_pred EeCCCCCCCHHHHHHHHHh----------------cC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEE
Confidence 6899999999999999875 36 7888899998 58999999999999999999999 9999998
Q ss_pred cCCCcEEEEEeccC
Q 040456 81 EAQWLEFLTSACGD 94 (146)
Q Consensus 81 ~~~~Kic~V~yAri 94 (146)
.. +.+.|.||+-
T Consensus 86 ~g--~~l~V~~a~~ 97 (100)
T 2j76_E 86 GN--RRIRVDVADQ 97 (100)
T ss_dssp TT--BCCCCEECCC
T ss_pred CC--eEEEEEeccC
Confidence 77 7888888864
No 126
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.96 E-value=2e-09 Score=74.26 Aligned_cols=70 Identities=16% Similarity=0.206 Sum_probs=61.3
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++..+ |...-+.++ .|||||.|.++++|.++++.++|..+.
T Consensus 16 V~nl~~~~t~~~l~~~F~~~----------------G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~ 71 (103)
T 2dgu_A 16 VRNLANTVTEEILEKAFSQF----------------GKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLE 71 (103)
T ss_dssp EECCCTTCCHHHHHHHHHHH----------------SCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEET
T ss_pred EeCCCCCCCHHHHHHHHHhc----------------CCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccC
Confidence 68999999999999999885 566666665 469999999999999999999999988
Q ss_pred CCCcEEEEEeccCcCh
Q 040456 82 AQWLEFLTSACGDQGM 97 (146)
Q Consensus 82 ~~~Kic~V~yAriQG~ 97 (146)
. +.+.|.||+-+..
T Consensus 72 g--~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 72 G--ENIEIVFAKPPDQ 85 (103)
T ss_dssp T--EEEEEEECCCCCC
T ss_pred C--CEEEEEEcCCCcc
Confidence 7 9999999987653
No 127
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=9.9e-10 Score=72.78 Aligned_cols=68 Identities=18% Similarity=0.110 Sum_probs=59.5
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHh-cCCcc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAF-NKSRW 80 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f-~g~~w 80 (146)
|.|||...|+++|.+++.++ |....+.++. +.|||||.|.++++|.+..+.+ +|..+
T Consensus 17 V~~l~~~~t~~~l~~~f~~~----------------G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~ 74 (85)
T 2ytc_A 17 VGGLGDTITETDLRNHFYQF----------------GEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIV 74 (85)
T ss_dssp EECCTTTSCHHHHHHHHHTT----------------SCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEE
T ss_pred EcCCCCCCCHHHHHHHHHhC----------------CCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeE
Confidence 68999999999999999874 5677777764 4799999999999999999988 99988
Q ss_pred cCCCcEEEEEecc
Q 040456 81 EAQWLEFLTSACG 93 (146)
Q Consensus 81 ~~~~Kic~V~yAr 93 (146)
.. +.+.|.|||
T Consensus 75 ~g--~~l~v~~ak 85 (85)
T 2ytc_A 75 NG--RRLNVKWGR 85 (85)
T ss_dssp TT--EECCEEECC
T ss_pred CC--CEEEEEecC
Confidence 87 889999986
No 128
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=8.8e-10 Score=76.63 Aligned_cols=75 Identities=20% Similarity=0.291 Sum_probs=63.8
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccce-EEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDF-LYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRW 80 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDF-lYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w 80 (146)
|+|||...|+++|.+++..+ |...- +.++.| .++.+.|||||.|.++++|.++.+. +|..+
T Consensus 20 V~nLp~~~te~~l~~~F~~~----------------G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~ 81 (104)
T 1wg5_A 20 LRGLPFGCSKEEIVQFFSGL----------------EIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERI 81 (104)
T ss_dssp EESCCTTCCHHHHHHHTTTC----------------CEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCS
T ss_pred EeCCCCCCCHHHHHHHHHhc----------------CCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-Ccchh
Confidence 68999999999999999763 45544 889999 8999999999999999999999998 88877
Q ss_pred cCCCcEEEEEeccCcC
Q 040456 81 EAQWLEFLTSACGDQG 96 (146)
Q Consensus 81 ~~~~Kic~V~yAriQG 96 (146)
.. +.++|.+|.-+.
T Consensus 82 ~g--r~i~v~~~~~~~ 95 (104)
T 1wg5_A 82 GH--RYIEIFKSSRAE 95 (104)
T ss_dssp SS--SCCEEEEECTTT
T ss_pred CC--cEEEEEECCHHH
Confidence 66 777888876543
No 129
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.95 E-value=2.8e-09 Score=82.08 Aligned_cols=78 Identities=15% Similarity=0.132 Sum_probs=70.5
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.++ |....+.++.|..++.+.|||||.|.++++|.+.++.++|..+.
T Consensus 20 VgnLp~~~te~~L~~~F~~~----------------G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~ 83 (213)
T 4f02_A 20 VGDLHPDVTEAMLYEKFSPA----------------GPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIK 83 (213)
T ss_dssp EESCCTTCCHHHHHHHHGGG----------------SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EeCCCCCCCHHHHHHHHHhh----------------CCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcC
Confidence 68999999999999999874 68888999999999999999999999999999999999999887
Q ss_pred CCCcEEEEEeccCcCh
Q 040456 82 AQWLEFLTSACGDQGM 97 (146)
Q Consensus 82 ~~~Kic~V~yAriQG~ 97 (146)
. +.+.+.+|..+..
T Consensus 84 g--~~i~~~~~~~~~~ 97 (213)
T 4f02_A 84 G--KPVRIMWSQRDPS 97 (213)
T ss_dssp T--EECEEEECCCCTH
T ss_pred C--ccccccccccccc
Confidence 7 8888888876553
No 130
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.95 E-value=5.2e-10 Score=81.45 Aligned_cols=77 Identities=18% Similarity=0.222 Sum_probs=63.7
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceE--EEcee---ccCCcceeEEEEeccChHHHHHHHHHhc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFL--YLPMD---FCHGANLGYAFVNFTTSVAAVRFAKAFN 76 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFl--YLPiD---f~~~~N~GYAFVNf~~~~~a~~f~~~f~ 76 (146)
|+|||...|.++|.++|..++ ....+ .+++| ..++.+.|||||.|.++++|.++.+.+|
T Consensus 50 V~nLp~~~te~~L~~~F~~~G----------------~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~ln 113 (143)
T 3egn_A 50 VKNLAKHVQEKDLKYIFGRYV----------------DFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEAN 113 (143)
T ss_dssp EEEECTTCCHHHHHHHHGGGC----------------CTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHHHhC----------------CcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhC
Confidence 789999999999999998753 33322 23334 2578899999999999999999999999
Q ss_pred CCcccCCCcEEEEEeccCcC
Q 040456 77 KSRWEAQWLEFLTSACGDQG 96 (146)
Q Consensus 77 g~~w~~~~Kic~V~yAriQG 96 (146)
|..+.. +.+.|.||+-+.
T Consensus 114 g~~~~g--~~l~V~~a~~~~ 131 (143)
T 3egn_A 114 GYVLFG--KPMVVQFARSAR 131 (143)
T ss_dssp TBEETT--EECEEEECCCSC
T ss_pred CCEeCC--cEEEEEECCCCC
Confidence 999877 999999997654
No 131
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.94 E-value=1.4e-09 Score=76.72 Aligned_cols=69 Identities=14% Similarity=0.162 Sum_probs=61.1
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++..+ |...-+.++- +.|||||.|.++++|.+.++.+||..+.
T Consensus 15 V~nLp~~~te~~L~~~F~~~----------------G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 72 (111)
T 1whx_A 15 AKNLPAGTLAAEIQETFSRF----------------GSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFH 72 (111)
T ss_dssp EESCCTTCCHHHHHHHHHTT----------------SCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSS
T ss_pred EeCCCCCCCHHHHHHHHHhc----------------CCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 68999999999999999874 6777777763 6799999999999999999999999987
Q ss_pred CCCcEEEEEeccC
Q 040456 82 AQWLEFLTSACGD 94 (146)
Q Consensus 82 ~~~Kic~V~yAri 94 (146)
. +.+.|.||+.
T Consensus 73 g--~~l~V~~a~~ 83 (111)
T 1whx_A 73 H--VPLYLEWAPI 83 (111)
T ss_dssp S--SBCEEEEEET
T ss_pred C--eEEEEEECCC
Confidence 7 8889999974
No 132
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.93 E-value=1.9e-09 Score=75.20 Aligned_cols=71 Identities=11% Similarity=0.186 Sum_probs=62.6
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|.|||...|+++|.+++.++ |....+.++.| |||||.|.++++|.++++.+||..+.
T Consensus 20 V~nLp~~~t~~~l~~~F~~~----------------G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~ 76 (108)
T 1x4c_A 20 VSGLPPSGSWQDLKDHMREA----------------GDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFR 76 (108)
T ss_dssp EESCCSSCCHHHHHHHHGGG----------------SCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEE
T ss_pred EeCCCCCCCHHHHHHHHHhc----------------CCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCcc
Confidence 68999999999999999874 67888888887 99999999999999999999999987
Q ss_pred CCC---cEEEEEeccCc
Q 040456 82 AQW---LEFLTSACGDQ 95 (146)
Q Consensus 82 ~~~---Kic~V~yAriQ 95 (146)
... +.+.|.+|+-.
T Consensus 77 g~~~~~~~i~V~~a~~~ 93 (108)
T 1x4c_A 77 SHEGETAYIRVKVDGPR 93 (108)
T ss_dssp CTTSCEEEEEEEESSCC
T ss_pred CCcCcceEEEEEeCCCC
Confidence 633 78999999763
No 133
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.93 E-value=2.1e-09 Score=78.75 Aligned_cols=72 Identities=13% Similarity=0.205 Sum_probs=64.4
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++..+ |....+.++.| +.|||||.|.++++|.+..+.+||..+.
T Consensus 78 V~nl~~~~t~~~l~~~F~~~----------------G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~ 136 (150)
T 2i2y_A 78 VGNLGNNGNKTELERAFGYY----------------GPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLC 136 (150)
T ss_dssp EESCCSCCSCHHHHHHHHHH----------------SCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSS
T ss_pred EeCCCCCCCHHHHHHHHHhh----------------CCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 68999999999999999875 67888888887 5899999999999999999999999887
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+-+.
T Consensus 137 g--~~l~v~~a~~~~ 149 (150)
T 2i2y_A 137 G--CRVRVELSNGEK 149 (150)
T ss_dssp S--SCCEEEECCCCC
T ss_pred C--eEEEEEEcCCCC
Confidence 6 889999997653
No 134
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=5.2e-09 Score=70.64 Aligned_cols=69 Identities=13% Similarity=0.175 Sum_probs=60.7
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++..+ |....+.++ .|||||.|.++++|.++++.++|..+.
T Consensus 15 V~nLp~~~t~~~l~~~F~~~----------------G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~ 70 (92)
T 2dgt_A 15 VGNISPTCTNQELRAKFEEY----------------GPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQ 70 (92)
T ss_dssp EESCCSSCCHHHHHHHHHTT----------------SCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEET
T ss_pred EeCCCCCCCHHHHHHHHHhc----------------CCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 68999999999999999874 577777776 349999999999999999999999987
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+-+.
T Consensus 71 g--~~l~V~~a~~~~ 83 (92)
T 2dgt_A 71 G--KRMHVQLSTSRL 83 (92)
T ss_dssp T--EEEEEEESSCCC
T ss_pred C--cEEEEEEccCCC
Confidence 7 999999997654
No 135
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.91 E-value=3.4e-09 Score=73.00 Aligned_cols=69 Identities=12% Similarity=0.210 Sum_probs=60.3
Q ss_pred CcCCCC-ccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcc
Q 040456 2 IKNIPN-RFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRW 80 (146)
Q Consensus 2 irNIPn-k~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w 80 (146)
|+|||. ..|+++|.+++..+ |...-+.++ .|||||.|.+.++|.++.+.++|..+
T Consensus 27 V~nLp~~~~t~~~L~~~F~~~----------------G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (97)
T 2xnq_A 27 IGNLPLKNVSKEDLFRIFSPY----------------GHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMN 82 (97)
T ss_dssp EESCCSSCCCHHHHHHHHGGG----------------SCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEE
T ss_pred EeCCCcccCCHHHHHHHHHhc----------------CCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 689998 99999999999874 566666663 79999999999999999999999998
Q ss_pred cCCCcEEEEEeccCcC
Q 040456 81 EAQWLEFLTSACGDQG 96 (146)
Q Consensus 81 ~~~~Kic~V~yAriQG 96 (146)
.. +.+.|.||+-++
T Consensus 83 ~g--~~l~V~~a~~~~ 96 (97)
T 2xnq_A 83 FG--KKLILEVSSSNA 96 (97)
T ss_dssp TT--EECEEEECCCCC
T ss_pred CC--EEEEEEecCCCC
Confidence 76 889999998665
No 136
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.91 E-value=6.7e-10 Score=77.61 Aligned_cols=84 Identities=12% Similarity=0.126 Sum_probs=68.3
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++..++ ..+...-+.|+.|.. +.+.|||||.|.+.++|.++.+ .+|..+.
T Consensus 16 V~nLp~~~te~~l~~~F~~~g-------------~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~ 80 (107)
T 2lmi_A 16 AQGLPWSCTMEDVLNFFSDCR-------------IRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMG 80 (107)
T ss_dssp EECCCSSCCSHHHHHHTTTSC-------------BTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSS
T ss_pred EeCCCCCCCHHHHHHHHHhcC-------------CcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeC
Confidence 789999999999999997642 123378899999987 9999999999999999999999 8998776
Q ss_pred CCCcEEEEEeccCcChHHHHH
Q 040456 82 AQWLEFLTSACGDQGMDALKI 102 (146)
Q Consensus 82 ~~~Kic~V~yAriQG~~al~~ 102 (146)
. +.+.|.+|.-+.....++
T Consensus 81 g--r~i~V~~a~~~~~~~~~~ 99 (107)
T 2lmi_A 81 Q--RYVEVYEINNEDVDALMK 99 (107)
T ss_dssp S--SCCCCEECCHHHHHHHHH
T ss_pred C--eEEEEEECCHHHHHHHHH
Confidence 6 778888887554443333
No 137
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.91 E-value=1.4e-09 Score=74.72 Aligned_cols=72 Identities=14% Similarity=0.258 Sum_probs=63.4
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++..+ |...-+.++.|. ++.+.|||||.|.++++|.+..+ +|..+.
T Consensus 14 V~nLp~~~t~~~l~~~F~~~----------------G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~ 74 (102)
T 2xs2_A 14 VGGIDVRMDETEIRSFFARY----------------GSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFH 74 (102)
T ss_dssp EECCCTTCCHHHHHHHHGGG----------------SCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEET
T ss_pred EeCCCCCCCHHHHHHHHHhC----------------CCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeEC
Confidence 68999999999999999774 688889999998 99999999999999999999998 777766
Q ss_pred CCCcEEEEEeccC
Q 040456 82 AQWLEFLTSACGD 94 (146)
Q Consensus 82 ~~~Kic~V~yAri 94 (146)
. +.+.|.+|.-
T Consensus 75 g--~~l~v~~a~~ 85 (102)
T 2xs2_A 75 G--KKLKLGPAIR 85 (102)
T ss_dssp T--EECEEEEEEE
T ss_pred C--EEEEEEECCc
Confidence 6 7788888753
No 138
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.91 E-value=2.1e-09 Score=72.37 Aligned_cols=69 Identities=17% Similarity=0.354 Sum_probs=57.9
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.++ ....+.+ | .+.|||||.|.++++|.+..+.+||..+.
T Consensus 10 V~nLp~~~t~~~l~~~F~~~-----------------~v~~~~i--~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 66 (88)
T 1wg1_A 10 VKNLPQDSNCQEVHDLLKDY-----------------DLKYCYV--D----RNKRTAFVTLLNGEQAQNAIQMFHQYSFR 66 (88)
T ss_dssp EESCCSSCCHHHHHHHTCSS-----------------CCCCEEE--E----GGGTEEEECCSCHHHHHHHHHHHTTEEET
T ss_pred EeCCCCCCCHHHHHHHHhhC-----------------CeEEEEE--e----CCCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 68999999999999988642 3333444 3 67899999999999999999999999988
Q ss_pred CCCcEEEEEeccCc
Q 040456 82 AQWLEFLTSACGDQ 95 (146)
Q Consensus 82 ~~~Kic~V~yAriQ 95 (146)
. +.+.|.||.-.
T Consensus 67 g--~~l~V~~a~~~ 78 (88)
T 1wg1_A 67 G--KDLIVQLQPTD 78 (88)
T ss_dssp T--EEEEEEECCCC
T ss_pred C--cEEEEEEcCCC
Confidence 7 89999998654
No 139
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=1.8e-09 Score=77.37 Aligned_cols=73 Identities=11% Similarity=0.169 Sum_probs=62.6
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcC--Cc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNK--SR 79 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g--~~ 79 (146)
|+|||...|+++|.+++.++ |...-+.++.| +|||||.|.+.++|...++.+++ ..
T Consensus 21 V~nLp~~vte~dL~~lF~~f----------------G~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~ 78 (105)
T 1sjq_A 21 IRKLPIDVTEGEVISLGLPF----------------GKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPV 78 (105)
T ss_dssp ECSCCTTSCHHHHHHHHHHH----------------CCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCE
T ss_pred EeCCCCCCCHHHHHHHHHhc----------------CCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCce
Confidence 78999999999999999885 67888888765 69999999999999999999875 44
Q ss_pred ccCCCcEEEEEeccCcChH
Q 040456 80 WEAQWLEFLTSACGDQGMD 98 (146)
Q Consensus 80 w~~~~Kic~V~yAriQG~~ 98 (146)
+.. +.+.|.||+-|...
T Consensus 79 l~G--r~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 79 LRG--QPIYIQFSNHKELK 95 (105)
T ss_dssp ETT--EECCBCCCSSSSCC
T ss_pred ECC--EEEEEEEcCCCCCC
Confidence 554 89999999877654
No 140
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.90 E-value=3.3e-09 Score=76.04 Aligned_cols=71 Identities=17% Similarity=0.211 Sum_probs=61.6
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCC-ccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRS-EYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRW 80 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~-~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w 80 (146)
|+|||...|+++|.+++.++ | ...++.++.+ .+.|||||.|.+.++|.+.++.+||..+
T Consensus 33 VgnLp~~~te~dL~~~F~~~----------------G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l 92 (111)
T 2jvr_A 33 MKNLPEGCSWQDLKDLAREN----------------SLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEF 92 (111)
T ss_dssp EECSSCCCCHHHHHHHHHHH----------------TCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEE
T ss_pred EECCCCCCCHHHHHHHHHHh----------------CCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 68999999999999999875 4 6667766543 3789999999999999999999999998
Q ss_pred cCCCcEEEEEeccC
Q 040456 81 EAQWLEFLTSACGD 94 (146)
Q Consensus 81 ~~~~Kic~V~yAri 94 (146)
.. +.+.|.+|+-
T Consensus 93 ~G--r~i~V~~a~~ 104 (111)
T 2jvr_A 93 RG--SVITVERDDN 104 (111)
T ss_dssp TT--EEEEEEESCC
T ss_pred CC--eEEEEEECCC
Confidence 87 8899999863
No 141
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.90 E-value=3.6e-09 Score=78.75 Aligned_cols=75 Identities=11% Similarity=0.062 Sum_probs=66.0
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.++|..+ |...-+.++.|..++.+.|||||.|.++++|.++.+. +|..+.
T Consensus 18 V~nLp~~~te~~l~~~F~~~----------------G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~ 80 (196)
T 1l3k_A 18 IGGLSFETTDESLRSHFEQW----------------GTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVD 80 (196)
T ss_dssp EESCCTTCCHHHHHHHHGGG----------------SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEET
T ss_pred EeCCCCCCCHHHHHHHHHhC----------------CCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEEC
Confidence 78999999999999999874 6888899999999999999999999999999999987 777776
Q ss_pred CCCcEEEEEeccCc
Q 040456 82 AQWLEFLTSACGDQ 95 (146)
Q Consensus 82 ~~~Kic~V~yAriQ 95 (146)
. +.+.|.+|.-+
T Consensus 81 g--~~l~v~~~~~~ 92 (196)
T 1l3k_A 81 G--RVVEPKRAVSR 92 (196)
T ss_dssp T--EECEEEECCC-
T ss_pred C--EEeeeecccCc
Confidence 6 78888887644
No 142
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.89 E-value=4.5e-09 Score=80.96 Aligned_cols=74 Identities=20% Similarity=0.241 Sum_probs=66.4
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++..+ |....+.++.|- +.+.|||||.|.++++|.++++.+||..+.
T Consensus 108 v~nl~~~~t~~~l~~~F~~~----------------G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~ 169 (213)
T 4f02_A 108 IKNLDKSIDNKALYDTFSAF----------------GNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLN 169 (213)
T ss_dssp EESCCTTCCHHHHHHHHGGG----------------SCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred ECCcccccHHHHHHHHHhhc----------------CCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 68999999999999999874 678888898884 447999999999999999999999999987
Q ss_pred CCCcEEEEEeccCc
Q 040456 82 AQWLEFLTSACGDQ 95 (146)
Q Consensus 82 ~~~Kic~V~yAriQ 95 (146)
. +.+.|.||+-+
T Consensus 170 g--~~i~V~~a~~~ 181 (213)
T 4f02_A 170 D--RKVFVGRFKSR 181 (213)
T ss_dssp T--EECEEEECCCH
T ss_pred C--EEEEEEEcCCC
Confidence 7 99999999764
No 143
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.89 E-value=3.9e-09 Score=74.25 Aligned_cols=80 Identities=16% Similarity=0.259 Sum_probs=67.7
Q ss_pred CCcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceE-EEceeccCC-cceeEEEEeccChHHHHHHHHHhcCC
Q 040456 1 MIKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFL-YLPMDFCHG-ANLGYAFVNFTTSVAAVRFAKAFNKS 78 (146)
Q Consensus 1 MirNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFl-YLPiDf~~~-~N~GYAFVNf~~~~~a~~f~~~f~g~ 78 (146)
.||++|..+|++++.+.|+. ..++|++ |.|-+...+ .--+.|||||.+++++..|.+.|+|+
T Consensus 5 VIRrLPP~LteeeF~~~l~~----------------~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~ 68 (91)
T 1uw4_A 5 VIRRLPPTLTKEQLQEHLQP----------------MPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGY 68 (91)
T ss_dssp EEEEECTTCCHHHHHHHHCS----------------CCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTC
T ss_pred EEeCCCCCCCHHHHHHHhcC----------------cccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Confidence 38999999999999999975 2467877 467776654 55699999999999999999999999
Q ss_pred cccCCC---cEEEEEeccCcC
Q 040456 79 RWEAQW---LEFLTSACGDQG 96 (146)
Q Consensus 79 ~w~~~~---Kic~V~yAriQG 96 (146)
.|.... -.+.|.||-.|-
T Consensus 69 ~F~D~kg~~~~a~VE~AP~qk 89 (91)
T 1uw4_A 69 VFLDNKGQEYPAIVEFAPFQK 89 (91)
T ss_dssp EEECTTCCEEECEEEECSSCC
T ss_pred EEEcCCCCEeeeEEEEcCCCc
Confidence 998876 688899998884
No 144
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.87 E-value=5e-09 Score=76.63 Aligned_cols=79 Identities=18% Similarity=0.223 Sum_probs=61.6
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||.+.|.++|.+.|.+.... .|...-+.++ .++.++|||||.|.++++|..+++.+||..+.
T Consensus 34 V~nL~~~~~e~~L~~~L~~~F~~------------~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~ 98 (127)
T 2a3j_A 34 ITNINPEVPKEKLQALLYALASS------------QGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQ 98 (127)
T ss_dssp EESCCTTSCHHHHHHHHHHHHHH------------HSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCT
T ss_pred EeCCCCCCCHHHHHHHHHHHhcc------------CCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 68999999999987543322111 3555555554 36678999999999999999999999999887
Q ss_pred CCCcEEEEEeccCcCh
Q 040456 82 AQWLEFLTSACGDQGM 97 (146)
Q Consensus 82 ~~~Kic~V~yAriQG~ 97 (146)
. +.+.|.||+-+..
T Consensus 99 g--r~l~V~~a~~~~~ 112 (127)
T 2a3j_A 99 G--NPLVITFSETPQS 112 (127)
T ss_dssp T--SCCEEEECCCCCH
T ss_pred C--CEEEEEEccCcch
Confidence 6 8999999987654
No 145
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=2.1e-09 Score=75.69 Aligned_cols=72 Identities=10% Similarity=0.207 Sum_probs=59.7
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCC--c
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKS--R 79 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~--~ 79 (146)
|+|||...|+++|.+++..+ |...-+.++.| +|||||.|.+.++|..+++.+++. .
T Consensus 20 V~nLp~~~te~~L~~~F~~f----------------G~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~ 77 (101)
T 2cq1_A 20 IRKLPGEVTETEVIALGLPF----------------GKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPH 77 (101)
T ss_dssp EESCCTTCCHHHHHHTTTTT----------------SCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCE
T ss_pred EeCCCCCCCHHHHHHHHHhc----------------CCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCce
Confidence 68999999999999999764 66666766654 799999999999999999988654 3
Q ss_pred ccCCCcEEEEEeccCcCh
Q 040456 80 WEAQWLEFLTSACGDQGM 97 (146)
Q Consensus 80 w~~~~Kic~V~yAriQG~ 97 (146)
+.. +.+.|.||+-|..
T Consensus 78 ~~G--r~l~V~~a~~~~~ 93 (101)
T 2cq1_A 78 LRN--QPIYIQYSNHKEL 93 (101)
T ss_dssp ETT--EECEEEECSCSSC
T ss_pred ECC--cEEEEEEcCcccC
Confidence 444 8999999987654
No 146
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.87 E-value=4.5e-09 Score=75.75 Aligned_cols=75 Identities=17% Similarity=0.136 Sum_probs=65.3
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++..+ |...-+.++.|.. +.+.|||||.|.++++|.++.+.++|..+.
T Consensus 5 V~nlp~~~t~~~l~~~f~~~----------------G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 67 (166)
T 3md3_A 5 VGNLDKAITEDILKQYFQVG----------------GPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIE 67 (166)
T ss_dssp EEEEETTCCHHHHHHHHGGG----------------SCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred ECCCCCcCCHHHHHHHHHhc----------------CCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccC
Confidence 78999999999999999874 6788888988864 569999999999999999999999999987
Q ss_pred CCCcEEEEEeccCc
Q 040456 82 AQWLEFLTSACGDQ 95 (146)
Q Consensus 82 ~~~Kic~V~yAriQ 95 (146)
. +.+.|.+|.-+
T Consensus 68 g--~~i~v~~~~~~ 79 (166)
T 3md3_A 68 N--NIVKINWAFQS 79 (166)
T ss_dssp T--EECEEEECCCC
T ss_pred C--CeeEEEEcCCC
Confidence 6 88888888543
No 147
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.85 E-value=1.7e-09 Score=71.60 Aligned_cols=63 Identities=17% Similarity=0.315 Sum_probs=55.6
Q ss_pred CcCCCCcc------CHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHh
Q 040456 2 IKNIPNRF------KRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAF 75 (146)
Q Consensus 2 irNIPnk~------t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f 75 (146)
|.|||... |+++|.+++.. .|...-+.+| -.++.+.|||||.|.++++|.++.+.+
T Consensus 6 V~nLp~~~~~~~~~t~~~l~~~F~~----------------~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~l 67 (81)
T 2krb_A 6 VDNVPQVGPDRLEKLKNVIHKIFSK----------------FGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNA 67 (81)
T ss_dssp EESCCCCCTTTHHHHHHHHHHHHHT----------------TCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTS
T ss_pred EeCCCCCcHHHHHHHHHHHHHHHhh----------------cCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHh
Confidence 68999999 78999999976 4677778877 468899999999999999999999999
Q ss_pred cCCcccC
Q 040456 76 NKSRWEA 82 (146)
Q Consensus 76 ~g~~w~~ 82 (146)
||..+..
T Consensus 68 ng~~~~g 74 (81)
T 2krb_A 68 DGYKLDK 74 (81)
T ss_dssp SSCCCSS
T ss_pred cCcccCC
Confidence 9999876
No 148
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.85 E-value=4.6e-09 Score=74.20 Aligned_cols=73 Identities=10% Similarity=0.038 Sum_probs=59.8
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.++ |...-+.++.+ +|||||.|.+.++|...++.+++....
T Consensus 20 V~nLp~~~te~~L~~~F~~f----------------G~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~ 77 (104)
T 1wex_A 20 VRGLCESVVEADLVEALEKF----------------GTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVY 77 (104)
T ss_dssp EESCCSSCCHHHHHHHHTTT----------------SCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCB
T ss_pred EeCCCCCCCHHHHHHHHHhC----------------CCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCce
Confidence 68999999999999999874 67777776543 799999999999999999999876522
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
-..+.+.|.||+-|.
T Consensus 78 i~Gr~l~V~~a~~~~ 92 (104)
T 1wex_A 78 IAGQQAFFNYSTSKR 92 (104)
T ss_dssp SSSSBCEEEECSSSS
T ss_pred ECCEEEEEEEccCcc
Confidence 223888999997654
No 149
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.85 E-value=4.7e-09 Score=73.18 Aligned_cols=68 Identities=19% Similarity=0.223 Sum_probs=59.6
Q ss_pred CcCCCCc-cCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcc
Q 040456 2 IKNIPNR-FKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRW 80 (146)
Q Consensus 2 irNIPnk-~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w 80 (146)
|+|||.. .|+++|.++|..+ |...-+.+ +.|||||.|.++++|.++++.++|..+
T Consensus 32 V~nl~~~~~t~~~l~~~F~~~----------------G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~ 87 (110)
T 1wf1_A 32 IGNLNTALVKKSDVETIFSKY----------------GRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVL 87 (110)
T ss_dssp ECSCCCSSCCHHHHHHHHGGG----------------SCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEE
T ss_pred EeCCCcccCCHHHHHHHHHhC----------------CCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 6899999 9999999999875 45666655 579999999999999999999999998
Q ss_pred cCCCcEEEEEeccCc
Q 040456 81 EAQWLEFLTSACGDQ 95 (146)
Q Consensus 81 ~~~~Kic~V~yAriQ 95 (146)
.. +.+.|.||+-+
T Consensus 88 ~g--~~l~V~~a~~~ 100 (110)
T 1wf1_A 88 AG--QTLDINMAGEP 100 (110)
T ss_dssp TT--EECCEEESCCC
T ss_pred CC--eEEEEEECCCC
Confidence 77 88999999754
No 150
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=4e-09 Score=73.63 Aligned_cols=73 Identities=16% Similarity=0.151 Sum_probs=61.2
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++..+ +.. -+.|+.|- ++.++|||||.|.++++|.++++ .++..+.
T Consensus 20 V~nLp~~~te~~l~~~F~~~----------------G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~ 80 (102)
T 1wez_A 20 MRGLPYRATENDIYNFFSPL----------------NPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQ 80 (102)
T ss_dssp EESCCTTCCHHHHHHSSCSC----------------CCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSS
T ss_pred EeCCCCCCCHHHHHHHHHHc----------------Cce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeEC
Confidence 78999999999999998763 333 68899997 89999999999999999999995 6888776
Q ss_pred CCCcEEEEEeccCc
Q 040456 82 AQWLEFLTSACGDQ 95 (146)
Q Consensus 82 ~~~Kic~V~yAriQ 95 (146)
. +.++|..|.-.
T Consensus 81 g--r~i~V~~~~~~ 92 (102)
T 1wez_A 81 H--RYVELFLNSTA 92 (102)
T ss_dssp S--SCCEEEEECCC
T ss_pred C--cEEEEEECCCC
Confidence 6 67777777644
No 151
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.84 E-value=5.3e-09 Score=71.36 Aligned_cols=70 Identities=11% Similarity=0.205 Sum_probs=60.0
Q ss_pred CcCCCC-ccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcc
Q 040456 2 IKNIPN-RFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRW 80 (146)
Q Consensus 2 irNIPn-k~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w 80 (146)
|+|||. ..|+++|.+++..+ |...-+.++ .|||||.|.++++|..+++.++|..+
T Consensus 15 V~nlp~~~~t~~~l~~~F~~~----------------G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~ 70 (96)
T 2kvi_A 15 IGNLPLKNVSKEDLFRIFSPY----------------GHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMN 70 (96)
T ss_dssp EESSTTSCCCHHHHHHHHTTT----------------CCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSC
T ss_pred EeCCCcccCCHHHHHHHHHhc----------------CCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCee
Confidence 689998 99999999999764 566666664 79999999999999999999999988
Q ss_pred cCCCcEEEEEeccCcCh
Q 040456 81 EAQWLEFLTSACGDQGM 97 (146)
Q Consensus 81 ~~~~Kic~V~yAriQG~ 97 (146)
.. +.+.|.||+-+..
T Consensus 71 ~g--~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 71 FG--KKLILEVSSSNAR 85 (96)
T ss_dssp BT--TTBCEEEEECCCC
T ss_pred CC--cEEEEEEcCcCCC
Confidence 76 7788899876554
No 152
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.83 E-value=6.9e-09 Score=70.64 Aligned_cols=70 Identities=14% Similarity=0.176 Sum_probs=57.1
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|.|||...|+++|.+++.+ .|...-+.++.| ++|||||.|.++++|. .++|..+.
T Consensus 16 V~~Lp~~~te~~L~~~F~~----------------~G~i~~v~i~~~-----srGfaFV~F~~~~~A~----~~~~~~~~ 70 (89)
T 3d2w_A 16 VGRCTEDMTAEELQQFFCQ----------------YGEVVDVFIPKP-----FRAFAFVTFADDKVAQ----SLCGEDLI 70 (89)
T ss_dssp EESCCTTCCHHHHHHHHTT----------------TSCEEEEECCSS-----CCSEEEEEESCHHHHH----HHTTCEEE
T ss_pred EeCCCCCCCHHHHHHHHhc----------------cCCEEEEEEeeC-----CCCEEEEEECCHHHHH----HHcCCCcc
Confidence 6899999999999999987 478888889886 7899999999999987 47887665
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
...+.+.|.+|+.+.
T Consensus 71 ~~g~~v~v~~a~~k~ 85 (89)
T 3d2w_A 71 IKGISVHISNAEPKH 85 (89)
T ss_dssp ETTEEEEEEECC---
T ss_pred cCCEEEEEEEcCCCC
Confidence 434889999997654
No 153
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=5.2e-09 Score=75.97 Aligned_cols=68 Identities=19% Similarity=0.297 Sum_probs=58.3
Q ss_pred CCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcc-cC
Q 040456 4 NIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRW-EA 82 (146)
Q Consensus 4 NIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w-~~ 82 (146)
|||...|+++|.+++.++ |...-+++|.| +|||||.|.++++|.++++.+||+.+ ..
T Consensus 34 ~L~~~~te~~L~~~F~~f----------------G~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~ 91 (114)
T 2cq2_A 34 GLGNGVSRNQLLPVLEKC----------------GLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDD 91 (114)
T ss_dssp TGGGTCCHHHHHHHHHHH----------------SCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECT
T ss_pred CCCCCCCHHHHHHHHHhc----------------CCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccc
Confidence 499999999999999986 57777888753 79999999999999999999999988 43
Q ss_pred CC--cEEEEEecc
Q 040456 83 QW--LEFLTSACG 93 (146)
Q Consensus 83 ~~--Kic~V~yAr 93 (146)
.. +++.|.||+
T Consensus 92 lg~g~~l~v~~a~ 104 (114)
T 2cq2_A 92 LGQKITLYLNFVE 104 (114)
T ss_dssp TSCEEECEEEEES
T ss_pred cCCCcEEEEEecc
Confidence 33 788888874
No 154
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=5.7e-09 Score=76.10 Aligned_cols=72 Identities=11% Similarity=0.148 Sum_probs=61.1
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCC--c
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKS--R 79 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~--~ 79 (146)
|+|||...|+++|.+++.. .|...-+.++.| +|||||.|.+.++|..+++.+++. .
T Consensus 36 VgNLp~~vte~dL~~lF~~----------------fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~ 93 (119)
T 2ad9_A 36 IRKLPIDVTEGEVISLGLP----------------FGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPV 93 (119)
T ss_dssp EESCCTTCCHHHHHHHHTT----------------TSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCC
T ss_pred EeCCCCCCCHHHHHHHHHh----------------cCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCce
Confidence 6899999999999999987 467777888765 699999999999999999999863 4
Q ss_pred ccCCCcEEEEEeccCcCh
Q 040456 80 WEAQWLEFLTSACGDQGM 97 (146)
Q Consensus 80 w~~~~Kic~V~yAriQG~ 97 (146)
+.. +.+.|.||+-|..
T Consensus 94 l~G--r~l~V~~a~~k~~ 109 (119)
T 2ad9_A 94 LRG--QPIYIQFSNHKEL 109 (119)
T ss_dssp BTT--BCCEEEECSSSSC
T ss_pred ECC--eEEEEEEccCCCC
Confidence 444 8899999987654
No 155
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=8.9e-09 Score=73.36 Aligned_cols=72 Identities=17% Similarity=0.171 Sum_probs=62.3
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||-..|.++|.+++..+ ...-+.|+.|-. +.+.|||||.|.++++|.++. ..+|..+.
T Consensus 21 V~nLp~~~te~dl~~~F~~~-----------------~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~ 81 (109)
T 2dnn_A 21 VHGMPFSAMENDVRDFFHGL-----------------RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMI 81 (109)
T ss_dssp EECCCSSCCHHHHHHHTTTS-----------------CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEET
T ss_pred EeCCCCCCCHHHHHHHhccC-----------------CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeEC
Confidence 78999999999999998652 457889999965 889999999999999999998 68998877
Q ss_pred CCCcEEEEEeccC
Q 040456 82 AQWLEFLTSACGD 94 (146)
Q Consensus 82 ~~~Kic~V~yAri 94 (146)
. +.++|..|.-
T Consensus 82 g--r~i~V~~a~~ 92 (109)
T 2dnn_A 82 Q--RYVEVSPATE 92 (109)
T ss_dssp T--EEEEEEECCH
T ss_pred C--eEEEEEECCc
Confidence 6 8888988753
No 156
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=1.3e-08 Score=68.43 Aligned_cols=69 Identities=12% Similarity=0.120 Sum_probs=60.5
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++..+ |...-+.++ .|||||.|.++++|.+.++.++|..+.
T Consensus 14 V~nlp~~~t~~~l~~~F~~~----------------G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~ 69 (90)
T 2dnp_A 14 VGNVSAACTSQELRSLFERR----------------GRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVK 69 (90)
T ss_dssp EESCCTTCCHHHHHHHHHHH----------------SCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEET
T ss_pred EeCCCCCCCHHHHHHHHHcC----------------CCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 68999999999999999885 566667776 349999999999999999999999987
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+-+.
T Consensus 70 g--~~l~v~~a~~~~ 82 (90)
T 2dnp_A 70 G--KRINVELSTKGQ 82 (90)
T ss_dssp T--EECEEEESCCCC
T ss_pred C--cEEEEEECCCCC
Confidence 7 999999997654
No 157
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.81 E-value=1.6e-09 Score=76.85 Aligned_cols=59 Identities=12% Similarity=0.252 Sum_probs=53.5
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|.|||...|+++|.+++..+ |....+.++.| |||||.|.++++|..+++.+||..+.
T Consensus 21 V~nLp~~~t~~~l~~~F~~~----------------G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~ 77 (115)
T 3beg_B 21 VSGLPPSGSWQDLKDHMREA----------------GDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFR 77 (115)
T ss_dssp EEECCSSCCTTHHHHHHGGG----------------SCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCC
T ss_pred EeCCCCCCCHHHHHHHHHhc----------------CCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 67999999999999999874 67888888877 99999999999999999999999988
Q ss_pred CC
Q 040456 82 AQ 83 (146)
Q Consensus 82 ~~ 83 (146)
.-
T Consensus 78 gr 79 (115)
T 3beg_B 78 SH 79 (115)
T ss_dssp CT
T ss_pred Cc
Confidence 73
No 158
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.81 E-value=9.9e-09 Score=88.63 Aligned_cols=77 Identities=10% Similarity=0.119 Sum_probs=70.6
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|.|||...|+++|.++|.. .|.+..+.|+.|-.++.+.|||||.|.++++|..+++.+||..+.
T Consensus 107 V~nL~~~~te~~L~~~F~~----------------~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~ 170 (437)
T 3pgw_S 107 VARVNYDTTESKLRREFEV----------------YGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKID 170 (437)
T ss_pred EeCCCCCCCHHHHHHHHHH----------------cCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEEC
Confidence 7899999999999999987 468888999999999999999999999999999999999999987
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+-+.
T Consensus 171 g--r~i~V~~a~~~~ 183 (437)
T 3pgw_S 171 G--RRVLVDVERGRT 183 (437)
T ss_pred C--EEEEEEEeCCCC
Confidence 7 999999997543
No 159
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.80 E-value=8.1e-09 Score=72.49 Aligned_cols=67 Identities=18% Similarity=0.192 Sum_probs=59.7
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+||+.+.|.++|.+++.++ |..--++|.. +.|||||-|.++++|.+..+.+||.++.
T Consensus 12 VgNL~~~~te~~L~~lF~q~----------------G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~ 69 (89)
T 2wbr_A 12 LKNLTAQIDGPTLRTLCMQH----------------GPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLA 69 (89)
T ss_dssp EECCCTTCCCHHHHHHHHHH----------------SCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred EeCCCccCCHHHHHHHHHhh----------------CCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEEC
Confidence 68999999999999999997 4555566644 6899999999999999999999999988
Q ss_pred CCCcEEEEEec
Q 040456 82 AQWLEFLTSAC 92 (146)
Q Consensus 82 ~~~Kic~V~yA 92 (146)
. +...|.+|
T Consensus 70 g--r~I~V~~A 78 (89)
T 2wbr_A 70 N--TTIFAESP 78 (89)
T ss_dssp T--EEEEEECC
T ss_pred C--cEEEEEEC
Confidence 7 99999999
No 160
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.79 E-value=1.3e-08 Score=72.36 Aligned_cols=72 Identities=13% Similarity=0.127 Sum_probs=59.7
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.++ |...-+.++. .+|||||.|.+.++|...++.++|....
T Consensus 26 V~NLp~~~te~~L~~lF~~f----------------G~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~ 83 (100)
T 3r27_A 26 IRGLIDGVVEADLVEALQEF----------------GPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIY 83 (100)
T ss_dssp EESCCTTCCHHHHHHHHGGG----------------SCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEE
T ss_pred EeCCCCCCCHHHHHHHHhcc----------------CCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCce
Confidence 68999999999999999874 5666666652 4699999999999999999999998632
Q ss_pred CCCcEEEEEeccCc
Q 040456 82 AQWLEFLTSACGDQ 95 (146)
Q Consensus 82 ~~~Kic~V~yAriQ 95 (146)
-..+.+.|.||+-|
T Consensus 84 i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 84 IAGHPAFVNYSTSQ 97 (100)
T ss_dssp ETTEEEEEEECSCS
T ss_pred eCCcEEEEEecccc
Confidence 22299999999765
No 161
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.79 E-value=1.4e-08 Score=80.41 Aligned_cols=76 Identities=12% Similarity=0.225 Sum_probs=69.6
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|.++|.+++..+ |...-+.++.|..++.+.|||||.|.++++|.++.+.++|..+.
T Consensus 100 v~nlp~~~t~~~l~~~f~~~----------------G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 163 (284)
T 3smz_A 100 VANLPPSLTQQQFEELVRPF----------------GSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLG 163 (284)
T ss_dssp EESCCTTCCHHHHHHHHGGG----------------SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EcCCCCcCCHHHHHHHHHhc----------------CCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 78999999999999999874 67888999999999999999999999999999999999999887
Q ss_pred CCCcEEEEEeccCc
Q 040456 82 AQWLEFLTSACGDQ 95 (146)
Q Consensus 82 ~~~Kic~V~yAriQ 95 (146)
. +.+.|.||...
T Consensus 164 g--~~i~v~~a~~~ 175 (284)
T 3smz_A 164 P--RTLYVHWTDAG 175 (284)
T ss_dssp T--EECEEEECCGG
T ss_pred C--cEEEEEECCCC
Confidence 6 88999998643
No 162
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=98.79 E-value=2.5e-09 Score=76.29 Aligned_cols=79 Identities=15% Similarity=0.245 Sum_probs=65.3
Q ss_pred CCcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceE-EEceeccCCc-ceeEEEEeccChHHHHHHHHHhcCC
Q 040456 1 MIKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFL-YLPMDFCHGA-NLGYAFVNFTTSVAAVRFAKAFNKS 78 (146)
Q Consensus 1 MirNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFl-YLPiDf~~~~-N~GYAFVNf~~~~~a~~f~~~f~g~ 78 (146)
.||.+|+.+|++++++.|+.. -+.|++ |.|-|...+. -.+.|||||++++++..|.+.|+|+
T Consensus 13 VIRrLPP~Ltee~F~~~l~~~----------------~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~ 76 (97)
T 2l08_A 13 VIRRLPPGLTKEQLEEQLRPL----------------PAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGY 76 (97)
T ss_dssp EEECCCSCSCHHHHTTTTSCC----------------SSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTE
T ss_pred EEeCCCCCCCHHHHHHHhCCc----------------CccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCc
Confidence 389999999999999998752 124655 5777776544 4489999999999999999999999
Q ss_pred cccCCC---cEEEEEeccCc
Q 040456 79 RWEAQW---LEFLTSACGDQ 95 (146)
Q Consensus 79 ~w~~~~---Kic~V~yAriQ 95 (146)
.|...+ -.+.|.||-.|
T Consensus 77 ~F~D~kg~~~~a~VE~APyq 96 (97)
T 2l08_A 77 IFLDSKGLEYPAVVEFAPFQ 96 (97)
T ss_dssp EEECTTCCEEEEEEEECCCC
T ss_pred EEEeCCCCEeeeEEEecCCC
Confidence 998876 58889999887
No 163
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.79 E-value=8.1e-09 Score=75.85 Aligned_cols=70 Identities=14% Similarity=0.255 Sum_probs=59.8
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++..+ |....+ ..++.+.|||||.|.++++|.+..+.++|..+.
T Consensus 104 v~nlp~~~t~~~l~~~F~~~----------------g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 162 (175)
T 1fje_B 104 AKNLSFNITEDELKEVFEDA----------------LEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID 162 (175)
T ss_dssp EESCCSSCCHHHHHHHCTTC----------------SEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEET
T ss_pred EeCCCCCCCHHHHHHHHHhc----------------CeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 68999999999999988652 333333 567889999999999999999999999999988
Q ss_pred CCCcEEEEEeccC
Q 040456 82 AQWLEFLTSACGD 94 (146)
Q Consensus 82 ~~~Kic~V~yAri 94 (146)
. +.+.|.||+-
T Consensus 163 g--~~i~v~~a~~ 173 (175)
T 1fje_B 163 G--RSVSLYYTGE 173 (175)
T ss_dssp T--EEEEEEECSS
T ss_pred C--eEEEEEecCC
Confidence 7 8899999964
No 164
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.79 E-value=1.4e-08 Score=80.45 Aligned_cols=76 Identities=17% Similarity=0.228 Sum_probs=68.4
Q ss_pred CcCCCCcc-CHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcc
Q 040456 2 IKNIPNRF-KRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRW 80 (146)
Q Consensus 2 irNIPnk~-t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w 80 (146)
|+|||..+ |+++|.+++.. .|....+.++.|. ++.+.|||||.|.++++|.+..+.++|..+
T Consensus 189 v~nlp~~~~~~~~l~~~f~~----------------~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 251 (284)
T 3smz_A 189 VDRLPPGFNDVDALCRALSA----------------VHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSL 251 (284)
T ss_dssp EECCCTTCCCHHHHHHHTCS----------------SSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred EecCCcccCCHHHHHHHhhC----------------CCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Confidence 78999997 99999999976 4788899999987 788999999999999999999999999999
Q ss_pred cCCCcEEEEEeccCcC
Q 040456 81 EAQWLEFLTSACGDQG 96 (146)
Q Consensus 81 ~~~~Kic~V~yAriQG 96 (146)
.. +.+.|+||....
T Consensus 252 ~g--~~l~v~~a~~~~ 265 (284)
T 3smz_A 252 GG--SHLRVSFCAPGP 265 (284)
T ss_dssp TT--EECEEEECCSSS
T ss_pred CC--eEEEEEEecCCC
Confidence 76 899999997544
No 165
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=1.4e-08 Score=71.61 Aligned_cols=57 Identities=14% Similarity=0.223 Sum_probs=51.7
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccC---CcceeEEEEeccChHHHHHHHHHh
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCH---GANLGYAFVNFTTSVAAVRFAKAF 75 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~---~~N~GYAFVNf~~~~~a~~f~~~f 75 (146)
|.|||...|+++|.+++.++ |... +.++.|-.+ +.++|||||.|.++++|.++.+.+
T Consensus 13 VgnLp~~~te~~L~~~F~~~----------------G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 13 VGGLPPDIDEDEITASFRRF----------------GPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp EECCCTTCCHHHHHHHTTTT----------------CCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred EcCCCCCCCHHHHHHHHHhc----------------CCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 68999999999999999763 6777 889999887 699999999999999999999988
No 166
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.75 E-value=9.1e-09 Score=81.83 Aligned_cols=74 Identities=20% Similarity=0.243 Sum_probs=65.9
Q ss_pred CcCCCCc-cCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceecc-CCcceeEEEEeccChHHHHHHHHHhcCCc
Q 040456 2 IKNIPNR-FKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFC-HGANLGYAFVNFTTSVAAVRFAKAFNKSR 79 (146)
Q Consensus 2 irNIPnk-~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~-~~~N~GYAFVNf~~~~~a~~f~~~f~g~~ 79 (146)
|+|||.. .|+++|.+++..+ |....+.++.|.. |+.+.|||||.|.++++|.++. .+||..
T Consensus 215 v~nlp~~~~t~~~l~~~F~~~----------------G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~ 277 (292)
T 2ghp_A 215 IRNLSTELLDENLLRESFEGF----------------GSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSL 277 (292)
T ss_dssp EEEECTTTCCHHHHHHHHGGG----------------SCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEE
T ss_pred EECCCcccCCHHHHHHHHhcc----------------CCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCE
Confidence 7899999 9999999999874 6888899999887 6899999999999999999999 999999
Q ss_pred ccCCCcEEEEEeccC
Q 040456 80 WEAQWLEFLTSACGD 94 (146)
Q Consensus 80 w~~~~Kic~V~yAri 94 (146)
+.. +.+.|.||+-
T Consensus 278 ~~g--~~i~V~~a~~ 290 (292)
T 2ghp_A 278 LGN--REISVSLADK 290 (292)
T ss_dssp ETT--EEEEEEECCC
T ss_pred ECC--cEEEEEEecC
Confidence 877 9999999964
No 167
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=2.2e-08 Score=67.71 Aligned_cols=72 Identities=17% Similarity=0.152 Sum_probs=62.6
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceE-EEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFL-YLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRW 80 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFl-YLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w 80 (146)
|+|||...|+++|.+++..+ |....+ .++.|..++. |||.|.++++|....+.++|..+
T Consensus 20 V~nlp~~~t~~~l~~~F~~~----------------G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~ 79 (96)
T 2e44_A 20 IRNIPPHLQWEVLDSLLVQY----------------GVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQL 79 (96)
T ss_dssp EEEECSSSCHHHHHHHHHHH----------------SCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBC
T ss_pred EEcCCCCCCHHHHHHHHHhc----------------CCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEE
Confidence 68999999999999999875 577778 6888876544 99999999999999999999998
Q ss_pred cCCCcEEEEEeccCc
Q 040456 81 EAQWLEFLTSACGDQ 95 (146)
Q Consensus 81 ~~~~Kic~V~yAriQ 95 (146)
.. +.+.|.||+-.
T Consensus 80 ~g--~~l~V~~a~~~ 92 (96)
T 2e44_A 80 EN--FTLKVAYIPDE 92 (96)
T ss_dssp SS--CBCEEEECCCC
T ss_pred CC--cEEEEEEcCcc
Confidence 77 88899998643
No 168
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.74 E-value=1.1e-08 Score=74.18 Aligned_cols=57 Identities=16% Similarity=0.227 Sum_probs=53.1
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHH
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKA 74 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~ 74 (146)
|+|||...|+++|.+++.. .|...-+.++.|..++.+.|||||.|.++++|..+.+.
T Consensus 8 v~nLp~~~t~~~l~~~F~~----------------~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 8 IGGLNWDTTEDNLREYFGK----------------YGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp ECSCCTTCCHHHHHHHHTT----------------TCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS
T ss_pred EeCCCCCCCHHHHHHHHHh----------------CCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc
Confidence 7899999999999999976 47888999999999999999999999999999999985
No 169
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.73 E-value=7.3e-09 Score=73.35 Aligned_cols=69 Identities=13% Similarity=0.118 Sum_probs=59.6
Q ss_pred CcCCCC-ccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCc-
Q 040456 2 IKNIPN-RFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSR- 79 (146)
Q Consensus 2 irNIPn-k~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~- 79 (146)
|+|||. ..|+++|.+++.++ |...-+.++.| .|||||.|.+.++|..+++.++|..
T Consensus 20 V~nLp~~~~te~dL~~lF~~f----------------G~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~ 77 (102)
T 1x4d_A 20 IMDFQRGKNLRYQLLQLVEPF----------------GVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPA 77 (102)
T ss_dssp EESCCCSSSHHHHHHTTTGGG----------------SCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCC
T ss_pred EeCCCCCcCCHHHHHHHHHhc----------------CCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCc
Confidence 689999 99999999999874 67888888765 4899999999999999999999865
Q ss_pred -ccCCCcEEEEEeccC
Q 040456 80 -WEAQWLEFLTSACGD 94 (146)
Q Consensus 80 -w~~~~Kic~V~yAri 94 (146)
+.. +.+.|.||+-
T Consensus 78 ~~~G--r~l~V~~a~~ 91 (102)
T 1x4d_A 78 LVFG--KPVRVHLSQK 91 (102)
T ss_dssp EETT--EECEEEEECC
T ss_pred eECC--cEEEEEECCC
Confidence 444 8999999974
No 170
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.72 E-value=5.8e-09 Score=76.66 Aligned_cols=74 Identities=14% Similarity=0.114 Sum_probs=63.0
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.++|.+++.. ++ .+..|..++.+.|||||.|.++++|.++. .++|..+.
T Consensus 18 V~nLp~~~t~~~l~~~f~~~g~~---------------~~--~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 79 (175)
T 1fje_B 18 IGNLNPNKSVAELKVAISELFAK---------------ND--LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVF 79 (175)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHH---------------HT--CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEET
T ss_pred EeCCCCCCCHHHHHHHHHHhCCc---------------ce--EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeC
Confidence 78999999999999999987532 22 35667788899999999999999999999 59999888
Q ss_pred CCCcEEEEEeccCc
Q 040456 82 AQWLEFLTSACGDQ 95 (146)
Q Consensus 82 ~~~Kic~V~yAriQ 95 (146)
. +.+.|.+|.-+
T Consensus 80 g--~~l~v~~~~~~ 91 (175)
T 1fje_B 80 G--NEIKLEKPKGR 91 (175)
T ss_dssp T--EEEEEECCCCS
T ss_pred C--eEEEEecCCCc
Confidence 6 88999998754
No 171
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.71 E-value=1.5e-08 Score=67.80 Aligned_cols=70 Identities=11% Similarity=0.180 Sum_probs=56.8
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|.|||...|+++|.+++.+ .|...-+.++.| +.|||||.|.++++|. ..++..+.
T Consensus 10 V~nLp~~~te~~l~~~F~~----------------~G~i~~v~i~~~-----~~g~afV~f~~~~~a~----~~~~~~~~ 64 (88)
T 1wf0_A 10 VGRCTGDMTEDELREFFSQ----------------YGDVMDVFIPKP-----FRAFAFVTFADDQIAQ----SLCGEDLI 64 (88)
T ss_dssp EESCCSSSCHHHHHHHSTT----------------TSCCCEEECCSS-----CCSCCEEECSCHHHHH----HTTTCEEE
T ss_pred EeCCCCCCCHHHHHHHHHH----------------cCCeeEEEEecC-----CCCEEEEEECCHHHHH----HHhcCCce
Confidence 6899999999999999976 367777888766 7899999999999996 35676554
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
...+.+.|.+|+.+.
T Consensus 65 ~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 65 IKGISVHISNAEPKH 79 (88)
T ss_dssp ETTEEEEEECCCCCC
T ss_pred eCCEEEEEEecCCCC
Confidence 333889999997654
No 172
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.68 E-value=6.2e-08 Score=76.63 Aligned_cols=78 Identities=14% Similarity=0.081 Sum_probs=63.0
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|++.|.++.. -.|...-+.++. ++.++|||||.|.++++|.+.++.+||..|.
T Consensus 14 V~nlp~~~~~~~l~~~L~~~F~------------~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 78 (282)
T 3pgw_A 14 INNLNEKIKKDELKKSLYAIFS------------QFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFY 78 (282)
T ss_pred EeCCCCCCCHHHHHHHHHHHHh------------ccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeC
Confidence 7899999999998854444321 145666666654 6779999999999999999999999999987
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+-+.
T Consensus 79 g--~~l~v~~a~~~~ 91 (282)
T 3pgw_A 79 D--KPMRIQYAKTDS 91 (282)
T ss_pred C--cEEEEEEeccCc
Confidence 7 899999997654
No 173
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.66 E-value=5.4e-08 Score=77.33 Aligned_cols=77 Identities=14% Similarity=0.232 Sum_probs=62.2
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCC-ccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRS-EYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRW 80 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~-~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w 80 (146)
|+|||...|+++|.+++..+ | ....+.++.|-. +.+.|||||.|.++++|.++.+.++|..+
T Consensus 122 v~nlp~~~t~~~l~~~f~~~----------------G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 184 (292)
T 2ghp_A 122 MTNFPPSYTQRNIRDLLQDI----------------NVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKI 184 (292)
T ss_dssp EECCCTTCCHHHHHHHHHHT----------------TCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred EECCCCCCCHHHHHHHHHHh----------------CCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEe
Confidence 68999999999999999873 6 788899988876 67899999999999999999999999998
Q ss_pred cCCCcEEEEEeccCcCh
Q 040456 81 EAQWLEFLTSACGDQGM 97 (146)
Q Consensus 81 ~~~~Kic~V~yAriQG~ 97 (146)
.. +.+.|.||..+..
T Consensus 185 ~g--~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 185 EG--YTLVTKVSNPLEK 199 (292)
T ss_dssp TT--EECEEEECCCC--
T ss_pred CC--cEEEEEECCCCcc
Confidence 77 8889999876654
No 174
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.66 E-value=1.2e-08 Score=75.76 Aligned_cols=73 Identities=14% Similarity=0.113 Sum_probs=61.6
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++..+ + ..-+.|+.|.. +.++|||||.|.++++|.+++ ..++..+.
T Consensus 51 V~nLp~~~te~dL~~~F~~~----------------G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~ 111 (139)
T 2hgn_A 51 MRGLPYKATENDIYNFFSPL----------------N-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQ 111 (139)
T ss_dssp CCSCCTTCCHHHHHHHHCSC----------------C-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSS
T ss_pred EeCCCCCCCHHHHHHHHHhc----------------C-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEEC
Confidence 78999999999999999763 3 34788999965 899999999999999999999 77888776
Q ss_pred CCCcEEEEEeccCc
Q 040456 82 AQWLEFLTSACGDQ 95 (146)
Q Consensus 82 ~~~Kic~V~yAriQ 95 (146)
. +.++|..|...
T Consensus 112 g--R~i~V~~a~~~ 123 (139)
T 2hgn_A 112 H--RYIELFLNSTT 123 (139)
T ss_dssp S--CCCCCEECCCS
T ss_pred C--EEEEEEECCCC
Confidence 6 67777777544
No 175
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.65 E-value=5.7e-08 Score=77.02 Aligned_cols=77 Identities=14% Similarity=0.150 Sum_probs=66.7
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|.++|.+++..+ |....+.++.| .++.+.|||||.|.++++|.++.+.++|..+-
T Consensus 101 v~nl~~~~t~~~l~~~F~~~----------------G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 163 (261)
T 3sde_A 101 VKNLSPVVSNELLEQAFSQF----------------GPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFL 163 (261)
T ss_dssp EESCCTTCCHHHHHHHHGGG----------------SCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEE
T ss_pred ccCCCCCCCHHHHHHHHHhc----------------CCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEE
Confidence 68999999999999999764 68889999999 78999999999999999999999999776664
Q ss_pred CCC--cEEEEEeccCc
Q 040456 82 AQW--LEFLTSACGDQ 95 (146)
Q Consensus 82 ~~~--Kic~V~yAriQ 95 (146)
... +.+.|.+|.-+
T Consensus 164 ~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 164 LTTTPRPVIVEPMEQF 179 (261)
T ss_dssp SSSSCCBCEEEECCCE
T ss_pred ecCCCceEEEeecccc
Confidence 322 88999998643
No 176
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.63 E-value=4.2e-08 Score=64.90 Aligned_cols=75 Identities=13% Similarity=0.228 Sum_probs=54.7
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|.|||...|+++|.+++.+++.... ... .......-+.++.| .|||||.|.++++|.++. .++|..+.
T Consensus 11 V~nLp~~~t~~~l~~~F~~~~~~~g----~~~-~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 11 VGNIPFGITEEAMMDFFNAQMRLGG----LTQ-APGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp EESCCTTCCHHHHHHHHHHHHHHTT----CCS-SSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred EeCCCCCCCHHHHHHHHHHHhhhcc----ccc-CCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 6899999999999999988631100 000 00115556666644 799999999999999999 99999987
Q ss_pred CCCcEEEEE
Q 040456 82 AQWLEFLTS 90 (146)
Q Consensus 82 ~~~Kic~V~ 90 (146)
. +.+.|.
T Consensus 79 g--~~l~V~ 85 (87)
T 2hzc_A 79 G--QSLKIR 85 (87)
T ss_dssp T--EECEEE
T ss_pred C--eEEEEe
Confidence 6 555554
No 177
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.63 E-value=2.4e-08 Score=72.03 Aligned_cols=71 Identities=14% Similarity=0.121 Sum_probs=57.4
Q ss_pred CcCCCCc-cCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcc
Q 040456 2 IKNIPNR-FKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRW 80 (146)
Q Consensus 2 irNIPnk-~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w 80 (146)
|+|||.. .|+++|.+++.. .|...-+.|+. ++|||||.|.+.++|..+++.+++...
T Consensus 30 V~NLp~~~~te~~L~~lF~~----------------fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~ 87 (112)
T 1x4f_A 30 LSNLPHSGYSDSAVLKLAEP----------------YGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKAL 87 (112)
T ss_dssp EESCCCSSCCSHHHHTTTTT----------------TSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCC
T ss_pred EeCCCCccCCHHHHHHHHHh----------------cCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCc
Confidence 6899997 999999999876 46777888752 479999999999999999999987542
Q ss_pred cCCCcEEEEEeccC
Q 040456 81 EAQWLEFLTSACGD 94 (146)
Q Consensus 81 ~~~~Kic~V~yAri 94 (146)
.-..+.+.|.||+-
T Consensus 88 ~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 88 WFQGRCVKVDLSEK 101 (112)
T ss_dssp CSSSSCCEEEEECS
T ss_pred eECCEEEEEEECcc
Confidence 22228888999853
No 178
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=7.3e-08 Score=65.60 Aligned_cols=69 Identities=13% Similarity=0.094 Sum_probs=57.9
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|.|+ ..|+++|.+++.++ |...-+.++ .+.|||||.|.++++|.++++.++|..+.
T Consensus 20 V~n~--~~t~~~l~~~F~~~----------------G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 75 (97)
T 1x5p_A 20 VYGE--DMTPTLLRGAFSPF----------------GNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVE 75 (97)
T ss_dssp EECS--SCCHHHHHHHHTTT----------------SCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEET
T ss_pred EcCC--CCCHHHHHHHHhhC----------------CCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 4564 78999999999764 566666663 57899999999999999999999999987
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
. +.+.|.||+-+.
T Consensus 76 g--~~l~v~~a~~~~ 88 (97)
T 1x5p_A 76 S--VQLKVNIARKQP 88 (97)
T ss_dssp T--EEEEEECCSSCC
T ss_pred C--eEEEEEECCCCC
Confidence 6 999999998765
No 179
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.62 E-value=4.9e-08 Score=73.30 Aligned_cols=72 Identities=11% Similarity=0.113 Sum_probs=63.2
Q ss_pred CcCCCC-ccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcc
Q 040456 2 IKNIPN-RFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRW 80 (146)
Q Consensus 2 irNIPn-k~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w 80 (146)
|+|||. ..|+++|.+++..+ |...-+.++.|. .|||||.|.++++|.++.+.++|..+
T Consensus 8 v~nlp~~~~~~~~l~~~F~~~----------------G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~ 66 (198)
T 1qm9_A 8 VSNLNPERVTPQSLFILFGVY----------------GDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKL 66 (198)
T ss_dssp EECCCSSSCCHHHHHHHHHTT----------------CCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCC
T ss_pred EeCCCcccCCHHHHHHHHHhc----------------CCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCee
Confidence 789999 99999999999874 567778787764 78999999999999999999999998
Q ss_pred cCCCcEEEEEeccCcC
Q 040456 81 EAQWLEFLTSACGDQG 96 (146)
Q Consensus 81 ~~~~Kic~V~yAriQG 96 (146)
.. +.+.|.||+-+.
T Consensus 67 ~g--~~l~v~~a~~~~ 80 (198)
T 1qm9_A 67 HG--KPIRITLSKHQN 80 (198)
T ss_dssp SS--CCCEEEECCCCS
T ss_pred cC--eEEEEEEecCCC
Confidence 77 888999998653
No 180
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.62 E-value=8.9e-08 Score=75.70 Aligned_cols=69 Identities=17% Similarity=0.167 Sum_probs=60.4
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++..+ |....+.++.|- .|||||.|.+.++|.+..+.+||..+.
T Consensus 212 v~nl~~~~~~~~l~~~F~~~----------------G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~ 270 (282)
T 3pgw_A 212 LTNLPEETNELMLSMLFNQF----------------PGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKIT 270 (282)
T ss_pred EeCCCCcCCHHHHHHHHHhc----------------CCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeC
Confidence 78999999999999999874 677777776443 599999999999999999999999987
Q ss_pred -CCCcEEEEEecc
Q 040456 82 -AQWLEFLTSACG 93 (146)
Q Consensus 82 -~~~Kic~V~yAr 93 (146)
. +.+.|+||+
T Consensus 271 ~g--~~l~v~~ak 281 (282)
T 3pgw_A 271 QN--NAMKISFAK 281 (282)
T ss_pred CC--CEEEEEEec
Confidence 5 899999996
No 181
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.62 E-value=7.1e-08 Score=74.96 Aligned_cols=71 Identities=11% Similarity=0.112 Sum_probs=63.2
Q ss_pred CcCCCC-ccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcc
Q 040456 2 IKNIPN-RFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRW 80 (146)
Q Consensus 2 irNIPn-k~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w 80 (146)
|+|||. ..|+++|.+++..+ |...-+.++.|- .|||||.|.++++|.++.+.++|..+
T Consensus 39 V~nLp~~~~te~~L~~~F~~~----------------G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~ 97 (229)
T 2adc_A 39 VSNLNPERVTPQSLFILFGVY----------------GDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKL 97 (229)
T ss_dssp EESCCTTTCCHHHHHHHHHHH----------------TCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBC
T ss_pred EeCCCcccCCHHHHHHHHHhC----------------CCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeE
Confidence 789999 99999999999875 567778887774 79999999999999999999999998
Q ss_pred cCCCcEEEEEeccCc
Q 040456 81 EAQWLEFLTSACGDQ 95 (146)
Q Consensus 81 ~~~~Kic~V~yAriQ 95 (146)
.. +.+.|.||+-+
T Consensus 98 ~g--~~l~v~~a~~~ 110 (229)
T 2adc_A 98 HG--KPIRITLSKHQ 110 (229)
T ss_dssp SS--SBCEEECCSCC
T ss_pred CC--eEEEEEEecCc
Confidence 77 88999999765
No 182
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.61 E-value=7.1e-08 Score=72.39 Aligned_cols=71 Identities=13% Similarity=0.133 Sum_probs=59.5
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCC-ccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRS-EYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRW 80 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~-~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w 80 (146)
|+|||...|+++|.+++..+ | ....+.+-.+ +.|||||.|.++++|.+..+.+||..+
T Consensus 125 v~nl~~~~~~~~l~~~f~~~----------------G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~ 183 (198)
T 1qm9_A 125 LSNIPPSVSEEDLKVLFSSN----------------GGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDL 183 (198)
T ss_dssp ECCCCTTCCHHHHHHHHHHT----------------TSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCC
T ss_pred EeCCCCCCCHHHHHHHHHHc----------------CCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCcc
Confidence 78999999999999999874 5 5666665222 279999999999999999999999999
Q ss_pred c-CCCcEEEEEeccCc
Q 040456 81 E-AQWLEFLTSACGDQ 95 (146)
Q Consensus 81 ~-~~~Kic~V~yAriQ 95 (146)
. . +.+.|+||+-|
T Consensus 184 ~~g--~~l~v~~a~~~ 197 (198)
T 1qm9_A 184 GEN--HHLRVSFSKST 197 (198)
T ss_dssp SSC--CSCCEEEECCC
T ss_pred CCC--CeEEEEeeccc
Confidence 7 5 78889998754
No 183
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.60 E-value=8e-08 Score=74.66 Aligned_cols=70 Identities=13% Similarity=0.147 Sum_probs=59.8
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCC-ccceEEE-ceeccCCcceeEEEEeccChHHHHHHHHHhcCCc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRS-EYDFLYL-PMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSR 79 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~-~yDFlYL-PiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~ 79 (146)
|+|||...|+++|.+++.++ | ....+.+ |- +.|||||.|.++++|.+..+.++|..
T Consensus 156 V~nlp~~~t~~~l~~~f~~~----------------G~~i~~v~i~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~ 213 (229)
T 2adc_A 156 LSNIPPSVSEEDLKVLFSSN----------------GGVVKGFKFFQK------DRKMALIQMGSVEEAVQALIDLHNHD 213 (229)
T ss_dssp EECCCTTCCHHHHHHHHHTT----------------SCCEEEEEECSS------STTCEEEEESSHHHHHHHHHHHTTCB
T ss_pred EeCCCccCCHHHHHHHHHHc----------------CCCeeEEEEEEC------CCcEEEEEECCHHHHHHHHHHHCCCc
Confidence 68999999999999999873 5 5666655 42 36999999999999999999999999
Q ss_pred cc-CCCcEEEEEeccCc
Q 040456 80 WE-AQWLEFLTSACGDQ 95 (146)
Q Consensus 80 w~-~~~Kic~V~yAriQ 95 (146)
+. . +.+.|+||+-|
T Consensus 214 ~~~g--~~l~v~~a~~~ 228 (229)
T 2adc_A 214 LGEN--HHLRVSFSKST 228 (229)
T ss_dssp SSSS--CBCEEEECSSC
T ss_pred cCCC--CeEEEEEecCC
Confidence 97 5 78999999764
No 184
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.59 E-value=2.5e-08 Score=73.08 Aligned_cols=71 Identities=21% Similarity=0.254 Sum_probs=58.2
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccc--eEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYD--FLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSR 79 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yD--FlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~ 79 (146)
|+|||...|+++|.+++..+ ... -+.++.|.. +.++|||||.|.++++|.++++. ++..
T Consensus 47 VgnLp~~~te~dL~~~F~~~-----------------~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~ 107 (126)
T 2hgm_A 47 LRGLPFGCTKEEIVQFFSGL-----------------EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKER 107 (126)
T ss_dssp EECCCTTCCHHHHHHHTTTS-----------------CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCC
T ss_pred EeCCCCCCCHHHHHHHHhcC-----------------CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCE
Confidence 68999999999999998652 222 788999977 88999999999999999999985 6666
Q ss_pred ccCCCcEEEEEecc
Q 040456 80 WEAQWLEFLTSACG 93 (146)
Q Consensus 80 w~~~~Kic~V~yAr 93 (146)
+.. +.++|..|.
T Consensus 108 l~g--R~I~V~~a~ 119 (126)
T 2hgm_A 108 IGH--RYIEVFKSS 119 (126)
T ss_dssp BTT--BCCCCEEEC
T ss_pred ECC--EEEEEEECC
Confidence 655 666776664
No 185
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.59 E-value=2e-07 Score=71.64 Aligned_cols=75 Identities=11% Similarity=-0.004 Sum_probs=63.1
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|.|||...|+++|.+++..+ |...-+.+.. +.+.|||||.|.+.++|.+.++.+||..+.
T Consensus 51 VgNL~~~vted~L~~~Fs~f----------------G~V~~V~i~~----k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~ 110 (164)
T 1sjr_A 51 VENLFYPVTLDVLHQIFSKF----------------GTVLKIITFT----KNNQFQALLQYADPVSAQHAKLSLDGQNIY 110 (164)
T ss_dssp ECSCCSCCCHHHHHHHHHHH----------------SCEEEEEEEE----SSSCEEEEEEESCHHHHHHHHHHSTTBCSS
T ss_pred EeCcCCCCCHHHHHHHHHhc----------------CCEEEEEEEe----CCCCCEEEEEECCHHHHHHHHHHhCCCEec
Confidence 68999999999999999885 5777777742 236899999999999999999999999985
Q ss_pred CCCcEEEEEeccCcC
Q 040456 82 AQWLEFLTSACGDQG 96 (146)
Q Consensus 82 ~~~Kic~V~yAriQG 96 (146)
...+.+.|.||+.+.
T Consensus 111 g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 111 NACCTLRIDFSKLTS 125 (164)
T ss_dssp SSCSCEEEEECSSSS
T ss_pred CCCcEEEEEEecCCc
Confidence 433778999999764
No 186
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.57 E-value=8.6e-08 Score=74.41 Aligned_cols=72 Identities=8% Similarity=0.089 Sum_probs=62.6
Q ss_pred CcCCC-CccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcc
Q 040456 2 IKNIP-NRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRW 80 (146)
Q Consensus 2 irNIP-nk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w 80 (146)
|+||| .+.|+++|.+++.. .|...-+.++.| ..|||||.|.++++|...++.+||..+
T Consensus 9 V~nL~~~~~~~~~L~~~F~~----------------~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~ 67 (205)
T 3tyt_A 9 VYGLDQSKMNCDRVFNVFCL----------------YGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFM 67 (205)
T ss_dssp EECCCTTTCCHHHHHHHHTT----------------TSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEE
T ss_pred EeCCCcccCCHHHHHHHHHh----------------cCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 78999 89999999999976 467777777655 369999999999999999999999998
Q ss_pred cCCCcEEEEEeccCcC
Q 040456 81 EAQWLEFLTSACGDQG 96 (146)
Q Consensus 81 ~~~~Kic~V~yAriQG 96 (146)
.. +.+.|.||+-+.
T Consensus 68 ~g--~~l~v~~s~~~~ 81 (205)
T 3tyt_A 68 FG--QKMNVCVSKQPA 81 (205)
T ss_dssp TT--EECEEEECSCSC
T ss_pred CC--ceEEEEEccCCc
Confidence 87 999999998654
No 187
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.55 E-value=2.4e-07 Score=65.37 Aligned_cols=75 Identities=7% Similarity=-0.027 Sum_probs=60.3
Q ss_pred CcCCCC--cc---CHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccC-CcceeEEEEeccChHHHHHHHHHh
Q 040456 2 IKNIPN--RF---KRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCH-GANLGYAFVNFTTSVAAVRFAKAF 75 (146)
Q Consensus 2 irNIPn--k~---t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~-~~N~GYAFVNf~~~~~a~~f~~~f 75 (146)
|+|+.. .+ ++++|.+++.+ .|...-+.+|.|..+ +.+.|||||.|.++++|.+.++.+
T Consensus 13 l~Nm~~~~~l~dd~~~dl~~~f~~----------------~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~l 76 (105)
T 2pe8_A 13 LRNMVGAGEVDEDLEVETKEECEK----------------YGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDL 76 (105)
T ss_dssp EESSSCSCCC---CHHHHHHHGGG----------------GSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHH
T ss_pred EEcCCChHHhhHHHHHHHHHHHHh----------------cCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHH
Confidence 566653 23 45666666654 478888999998654 678999999999999999999999
Q ss_pred cCCcccCCCcEEEEEeccC
Q 040456 76 NKSRWEAQWLEFLTSACGD 94 (146)
Q Consensus 76 ~g~~w~~~~Kic~V~yAri 94 (146)
||+.+.. +.+.|.||..
T Consensus 77 nG~~~~G--r~i~v~~a~~ 93 (105)
T 2pe8_A 77 NGRYFGG--RVVKACFYNL 93 (105)
T ss_dssp TTCEETT--EECEEEECCH
T ss_pred CCCEECC--cEEEEEEcCH
Confidence 9999887 8999999963
No 188
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=7.1e-08 Score=65.33 Aligned_cols=68 Identities=12% Similarity=0.096 Sum_probs=56.6
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|.|||...|+++|.+++.++ |...-+ ++|-.++. ||||.|.++++|....+ ++|..+.
T Consensus 13 V~nl~~~~t~~~l~~~F~~~----------------G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~ 70 (94)
T 2e5g_A 13 VSGFPRGVDSAQLSEYFLAF----------------GPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLG 70 (94)
T ss_dssp EECCCTTCCHHHHHHHGGGT----------------SCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEET
T ss_pred EECCCCCCCHHHHHHHHHhc----------------CCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEEC
Confidence 68999999999999999874 444433 77777665 99999999999999999 9999887
Q ss_pred CCCcEEEEEecc
Q 040456 82 AQWLEFLTSACG 93 (146)
Q Consensus 82 ~~~Kic~V~yAr 93 (146)
. +.+.|.+|.
T Consensus 71 g--~~l~V~~a~ 80 (94)
T 2e5g_A 71 G--HRLRVRPRE 80 (94)
T ss_dssp T--EECCCBCSC
T ss_pred C--EEEEEEECC
Confidence 7 777777764
No 189
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.53 E-value=1.6e-07 Score=72.46 Aligned_cols=72 Identities=18% Similarity=0.261 Sum_probs=61.5
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.+++.. .|...-+.+|.|.. +.+.|||||.|.++++|..+.+..+ ..+.
T Consensus 114 V~nLp~~~t~~~L~~~F~~----------------~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~ 175 (193)
T 2voo_A 114 IKGFPTDATLDDIKEWLED----------------KGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPG-QKYK 175 (193)
T ss_dssp EECCCTTCCHHHHHHHHTT----------------SCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTT-CEET
T ss_pred ecCCCCcCCHHHHHHHHhc----------------CCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCC-CeEC
Confidence 6899999999999999976 47888899999864 8899999999999999999997654 4665
Q ss_pred CCCcEEEEEecc
Q 040456 82 AQWLEFLTSACG 93 (146)
Q Consensus 82 ~~~Kic~V~yAr 93 (146)
. +.+.|.+++
T Consensus 176 G--r~l~V~~~~ 185 (193)
T 2voo_A 176 E--TDLLILFKD 185 (193)
T ss_dssp T--EECEEEETT
T ss_pred C--EEEEEEEhH
Confidence 5 788888764
No 190
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.47 E-value=1.4e-07 Score=66.31 Aligned_cols=53 Identities=11% Similarity=0.138 Sum_probs=46.9
Q ss_pred CCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcccCCCcEEEEEec
Q 040456 37 RSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWEAQWLEFLTSAC 92 (146)
Q Consensus 37 ~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~~~Kic~V~yA 92 (146)
.|...-+.++.|.. +.++|||||.|.++++|.+.++.+||+.+.. +...|.||
T Consensus 51 ~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~G--r~i~v~~s 103 (104)
T 1jmt_A 51 YGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNG--QPIHAELS 103 (104)
T ss_dssp TCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETT--EECCEEEC
T ss_pred CCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECC--EEEEEEEc
Confidence 57888899998864 6789999999999999999999999998877 77778776
No 191
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.47 E-value=3.4e-07 Score=65.72 Aligned_cols=70 Identities=14% Similarity=0.113 Sum_probs=58.0
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|.|+ ..|+++|.++|..+ |...-+.++ .+.|||||.|.+.++|.++++.++|..+.
T Consensus 44 Vgnl--~~te~~L~~~F~~~----------------G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~ 99 (121)
T 2bz2_A 44 VYGE--DMTPTLLRGAFSPF----------------GNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVE 99 (121)
T ss_dssp EECS--SCCHHHHHHHHSTT----------------CCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCS
T ss_pred EcCC--CCCHHHHHHHHHcc----------------CCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4564 48999999999774 555556664 57899999999999999999999999887
Q ss_pred CCCcEEEEEeccCcCh
Q 040456 82 AQWLEFLTSACGDQGM 97 (146)
Q Consensus 82 ~~~Kic~V~yAriQG~ 97 (146)
. +.+.|.||+-+..
T Consensus 100 g--~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 100 S--VQLKVNIARKQPM 113 (121)
T ss_dssp S--CBCEEEECCSSCC
T ss_pred C--eEEEEEEeCCCCC
Confidence 6 8899999987754
No 192
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.44 E-value=7e-07 Score=66.07 Aligned_cols=74 Identities=11% Similarity=0.048 Sum_probs=62.5
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeE-EEEeccChHHHHHHHHHhcCCcc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGY-AFVNFTTSVAAVRFAKAFNKSRW 80 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GY-AFVNf~~~~~a~~f~~~f~g~~w 80 (146)
|.|+|...|.++|.+++.++ |...-+.++.+ +.|+ |||-|.++++|...++.+||..+
T Consensus 33 V~NL~~~vte~~L~~lFs~y----------------G~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i 91 (130)
T 3zzy_A 33 VENLFYPVTLDVLHQIFSKF----------------GTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNI 91 (130)
T ss_dssp EESCCSCCCHHHHHHHHTTS----------------SCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred ECCCCCCCCHHHHHHHHhCc----------------CCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCee
Confidence 68999999999999999874 67777777643 2476 99999999999999999999999
Q ss_pred cCCCcEEEEEeccCcC
Q 040456 81 EAQWLEFLTSACGDQG 96 (146)
Q Consensus 81 ~~~~Kic~V~yAriQG 96 (146)
..-.+.+.|.||+.+.
T Consensus 92 ~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 92 YNACCTLRIDFSKLTS 107 (130)
T ss_dssp ETTEEEEEEEECSCSS
T ss_pred cCCCcEEEEEecCCCc
Confidence 7633788999998764
No 193
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.44 E-value=3.2e-07 Score=74.13 Aligned_cols=72 Identities=11% Similarity=0.112 Sum_probs=58.7
Q ss_pred CcCCCCcc---------CHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHH
Q 040456 2 IKNIPNRF---------KRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFA 72 (146)
Q Consensus 2 irNIPnk~---------t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~ 72 (146)
|.|||... |+++|.+++.+ .|...-+.++. ++|||||.|.+.++|..++
T Consensus 139 VgnL~~~~~~~~~~~~~tEe~L~~~F~~----------------fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~ 196 (240)
T 3u1l_A 139 VGGIDGALNSKHLKPAQIESRIRFVFSR----------------LGDIDRIRYVE------SKNCGFVKFKYQANAEFAK 196 (240)
T ss_dssp EECTTGGGTTCCCCHHHHHHHHHHHHHT----------------TSCEEEEEEEG------GGTEEEEEESSHHHHHHHH
T ss_pred cCCCChhhhcccccccCcHHHHHHHHHc----------------cCCEEEEEEEC------CCCEEEEEeCCHHHHHHHH
Confidence 56888877 79999999987 47888887763 5899999999999999999
Q ss_pred HHhcCCccc----------CCCcEEEEEeccCc
Q 040456 73 KAFNKSRWE----------AQWLEFLTSACGDQ 95 (146)
Q Consensus 73 ~~f~g~~w~----------~~~Kic~V~yAriQ 95 (146)
++++|..+. ...+.+.|.||+-.
T Consensus 197 ~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 197 EAMSNQTLLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp HHHTTCCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred HHhCCCEEeccccccccccCCCCEEEEEEccCC
Confidence 999999881 01278999999754
No 194
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.41 E-value=7.7e-08 Score=71.55 Aligned_cols=80 Identities=11% Similarity=0.202 Sum_probs=58.1
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|+++|.++|..++....- ..... + ...+...+.+.|||||.|.++++|.++. .++|..+.
T Consensus 9 V~nLp~~~te~~l~~~F~~~g~i~g~-------~~~~~-~---~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 9 VGNIPFGITEEAMMDFFNAQMRLGGL-------TQAPG-N---PVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp EESCCTTCCHHHHHHHHHHHHHHHTC-------CSSSS-C---SEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred EcCCCCCCCHHHHHHHHHHHHhhccc-------ccCCC-C---ceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 78999999999999999987422110 00000 0 1122233556899999999999999999 89999987
Q ss_pred CCCcEEEEEeccCc
Q 040456 82 AQWLEFLTSACGDQ 95 (146)
Q Consensus 82 ~~~Kic~V~yAriQ 95 (146)
. +.+.|.+|+-+
T Consensus 77 g--~~i~v~~~~~~ 88 (198)
T 2yh0_A 77 G--QSLKIRRPHDY 88 (198)
T ss_dssp T--EEEEEECCCCC
T ss_pred C--ceEEEeCCCCC
Confidence 7 88999988643
No 195
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.41 E-value=3.9e-07 Score=66.25 Aligned_cols=79 Identities=11% Similarity=0.190 Sum_probs=56.7
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCC-ccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRS-EYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRW 80 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~-~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w 80 (146)
|+|||...|+++|.+++.+++....-. ...+ ..--+ ....+.|||||.|.++++|.++. .++|..+
T Consensus 9 V~nLp~~~t~~~l~~~F~~~g~~~g~~------~~~~~~v~~~------~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 9 VGNIPFGITEEAMMDFFNAQMRLGGLT------QAPGNPVLAV------QINQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp EESCCTTCCHHHHHHHHHHHHHHTTCC------SSSSCSEEEE------EEETTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred EcCCCcccCHHHHHHHHHHHhhhcccc------cCCCCceeee------EecCCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 789999999999999999874211000 0000 22222 22345899999999999999999 8999998
Q ss_pred cCCCcEEEEEeccCc
Q 040456 81 EAQWLEFLTSACGDQ 95 (146)
Q Consensus 81 ~~~~Kic~V~yAriQ 95 (146)
.. +.+.|.+|+-+
T Consensus 76 ~g--~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QG--QSLKIRRPHDY 88 (172)
T ss_dssp TT--EECEEECCSSC
T ss_pred cC--ceeeecCCccc
Confidence 76 78888887643
No 196
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.39 E-value=1.5e-06 Score=63.54 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=60.8
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeE-EEEeccChHHHHHHHHHhcCCcc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGY-AFVNFTTSVAAVRFAKAFNKSRW 80 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GY-AFVNf~~~~~a~~f~~~f~g~~w 80 (146)
|.|||...|+++|.+++.++ |...-+.+.. + + |+ |||-|.++++|..+++.+||..+
T Consensus 30 V~NL~~~vt~~~L~~~Fs~y----------------G~V~~v~i~~--~---~-Gf~aFVef~~~~~A~~A~~~LnG~~i 87 (124)
T 2e5i_A 30 IQNPLYPITVDVLYTVCNPV----------------GKVQRIVIFK--R---N-GIQAMVEFESVLCAQKAKAALNGADI 87 (124)
T ss_dssp EESCCSCCCHHHHHHHHTTT----------------SCEEEEEEEE--S---S-SEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred EcCcCCCCCHHHHHHHHHhc----------------CCEEEEEEEe--C---C-CCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 57999999999999999874 6777777742 2 2 85 99999999999999999999998
Q ss_pred cCCCcEEEEEeccCcC
Q 040456 81 EAQWLEFLTSACGDQG 96 (146)
Q Consensus 81 ~~~~Kic~V~yAriQG 96 (146)
..-...+.|.||+.+.
T Consensus 88 ~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 88 YAGCCTLKIEYARPTR 103 (124)
T ss_dssp BTTBSEEEEECCSCSC
T ss_pred cCCCeEEEEEEecCCc
Confidence 7622478899998775
No 197
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.36 E-value=5.6e-07 Score=71.26 Aligned_cols=68 Identities=10% Similarity=0.259 Sum_probs=58.2
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCccc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWE 81 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~ 81 (146)
|+|||...|.++|.+++..+ |...-+.+. .+.|||||.|.++++|.++...++|..+.
T Consensus 27 V~nLp~~~te~~l~~~F~~~----------------G~i~~v~i~------~~kg~afV~f~~~~~A~~A~~~l~g~~i~ 84 (261)
T 3sde_A 27 VGNLPTDITEEDFKRLFERY----------------GEPSEVFIN------RDRGFGFIRLESRTLAEIAKAELDGTILK 84 (261)
T ss_dssp EESCCTTCCHHHHHHHTGGG----------------CCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred EECCCCCCCHHHHHHHHHhc----------------CCEEEEEEe------CCCcEEEEEECCHHHHHHHHHHcCCcEEC
Confidence 78999999999999999774 456666663 34799999999999999999999999987
Q ss_pred CCCcEEEEEecc
Q 040456 82 AQWLEFLTSACG 93 (146)
Q Consensus 82 ~~~Kic~V~yAr 93 (146)
. +.+.|.||.
T Consensus 85 g--~~l~v~~a~ 94 (261)
T 3sde_A 85 S--RPLRIRFAT 94 (261)
T ss_dssp T--EECEEEECC
T ss_pred C--ceeEeeecc
Confidence 6 888888874
No 198
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.35 E-value=7.9e-07 Score=62.34 Aligned_cols=52 Identities=17% Similarity=0.125 Sum_probs=43.3
Q ss_pred CCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcccCCCcEEEEEeccC
Q 040456 37 RSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWEAQWLEFLTSACGD 94 (146)
Q Consensus 37 ~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~~~Kic~V~yAri 94 (146)
.|...-+++ .|- .+.|||||.|.++++|.+.++.+||..+.. +.+.|.||.-
T Consensus 50 ~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~~~g--r~l~v~~a~~ 101 (112)
T 2dit_A 50 FGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRWFGG--RQITAQAWDG 101 (112)
T ss_dssp TSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCEETT--EECEEEECCS
T ss_pred cCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCEECC--cEEEEEEeCC
Confidence 466666766 343 379999999999999999999999999876 8999999854
No 199
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.30 E-value=1.3e-06 Score=67.77 Aligned_cols=65 Identities=9% Similarity=0.072 Sum_probs=52.9
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCcc--ceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCc
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEY--DFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSR 79 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~y--DFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~ 79 (146)
|+|||...|+++|.+++.++ |.. .-+-+..|- +...|||||.|.+.++|......+||..
T Consensus 128 v~NLp~~~t~~~L~~~F~~~----------------G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~ 189 (205)
T 3tyt_A 128 FFNAPLEVTEENFFEICDEL----------------GVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQ 189 (205)
T ss_dssp EEEECTTCCHHHHHHHHHHH----------------TCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCE
T ss_pred EeCCCCCCCHHHHHHHHHhc----------------CCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCC
Confidence 68999999999999999986 444 445554443 3345999999999999999999999998
Q ss_pred ccCCC
Q 040456 80 WEAQW 84 (146)
Q Consensus 80 w~~~~ 84 (146)
+..-.
T Consensus 190 ~~g~~ 194 (205)
T 3tyt_A 190 MKNPN 194 (205)
T ss_dssp ECCSS
T ss_pred ccCCC
Confidence 87654
No 200
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.29 E-value=1.6e-06 Score=62.52 Aligned_cols=56 Identities=9% Similarity=0.105 Sum_probs=49.8
Q ss_pred CCccceEEEceecc----CCcceeEEEEeccChHHHHHHHHHhcCCcccCCCcEEEEEeccC
Q 040456 37 RSEYDFLYLPMDFC----HGANLGYAFVNFTTSVAAVRFAKAFNKSRWEAQWLEFLTSACGD 94 (146)
Q Consensus 37 ~~~yDFlYLPiDf~----~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~~~Kic~V~yAri 94 (146)
.|...-+.+|.|.. ++..+|+|||.|.++++|.+.++.+||+.+.. +.+.|.|+..
T Consensus 49 ~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G--R~i~v~~~~~ 108 (118)
T 3ue2_A 49 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG--RKVVAEVYDQ 108 (118)
T ss_dssp TSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEEECH
T ss_pred cCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC--cEEEEEEcCh
Confidence 68899999999976 45788999999999999999999999999877 8888988853
No 201
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=1.9e-06 Score=60.53 Aligned_cols=66 Identities=23% Similarity=0.113 Sum_probs=53.8
Q ss_pred CccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcccCCCcE
Q 040456 7 NRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWEAQWLE 86 (146)
Q Consensus 7 nk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~~~Ki 86 (146)
..+|+++|.+++.+ .|...-++++ +.+.|||||.|.++++|..+++..++. .. +.
T Consensus 27 ~~~te~~L~~~F~~----------------~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~~--~g--~~ 81 (100)
T 2d9o_A 27 GGYSKDVLLRLLQK----------------YGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVGL--VD--NP 81 (100)
T ss_dssp CSCCHHHHHHHHHT----------------TSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCBC--SS--SB
T ss_pred CCCCHHHHHHHHHh----------------cCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCCC--CC--Ce
Confidence 45899999999987 4678888887 467899999999999999999885553 22 77
Q ss_pred EEEEeccCcCh
Q 040456 87 FLTSACGDQGM 97 (146)
Q Consensus 87 c~V~yAriQG~ 97 (146)
+.|.||+-+..
T Consensus 82 l~V~~a~~~~~ 92 (100)
T 2d9o_A 82 LKISWLEGQPQ 92 (100)
T ss_dssp CEEECSSCCCC
T ss_pred EEEEEccCCCC
Confidence 88999987653
No 202
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.29 E-value=1.5e-06 Score=61.16 Aligned_cols=56 Identities=14% Similarity=0.202 Sum_probs=49.8
Q ss_pred CCccceEEEceeccC--CcceeEEEEeccChHHHHHHHHHhcCCcccCCCcEEEEEeccC
Q 040456 37 RSEYDFLYLPMDFCH--GANLGYAFVNFTTSVAAVRFAKAFNKSRWEAQWLEFLTSACGD 94 (146)
Q Consensus 37 ~~~yDFlYLPiDf~~--~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~~~Kic~V~yAri 94 (146)
.|...-+.+|.|..+ +.+.|+|||.|.++++|.+.++.+||+.+.. +.+.|+|+..
T Consensus 39 ~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~G--R~i~v~~~~~ 96 (105)
T 3v4m_A 39 YGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFAN--RVVVTKYCDP 96 (105)
T ss_dssp TSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEEECH
T ss_pred cCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCC--CEEEEEEeCH
Confidence 588899999999865 3689999999999999999999999999877 8899998753
No 203
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.22 E-value=1.8e-06 Score=61.31 Aligned_cols=67 Identities=16% Similarity=0.157 Sum_probs=52.8
Q ss_pred CcCCCCccCHHHHHH----HHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcC
Q 040456 2 IKNIPNRFKRHDLLQ----ILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNK 77 (146)
Q Consensus 2 irNIPnk~t~~~L~~----~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g 77 (146)
|+|||-+.+.++|++ ++++++ |+.=-+ ++ |+|||-|.+.++|.+..+.++|
T Consensus 14 V~NL~~~~~~~~lk~~L~~lF~~yG---------------G~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G 68 (96)
T 2diu_A 14 VYNLPANKDGKSVSNRLRRLSDNCG---------------GKVLSI-------TG---CSAILRFINQDSAERAQKRMEN 68 (96)
T ss_dssp EESCCTTSCHHHHHHHHHHHHHTTT---------------CCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTT
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHcC---------------CeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcC
Confidence 789999999998664 555431 121111 33 9999999999999999999999
Q ss_pred CcccCCCcEEEEEeccCc
Q 040456 78 SRWEAQWLEFLTSACGDQ 95 (146)
Q Consensus 78 ~~w~~~~Kic~V~yAriQ 95 (146)
..... |.+.|.||+..
T Consensus 69 ~~l~g--r~i~v~~A~~~ 84 (96)
T 2diu_A 69 EDVFG--NRIIVSFTPKN 84 (96)
T ss_dssp CCSSS--SCCEEESSCCS
T ss_pred CccCC--ceEEEEecCCC
Confidence 98776 99999999765
No 204
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=97.99 E-value=8.5e-06 Score=68.91 Aligned_cols=69 Identities=22% Similarity=0.340 Sum_probs=56.5
Q ss_pred CcC--CCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCc
Q 040456 2 IKN--IPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSR 79 (146)
Q Consensus 2 irN--IPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~ 79 (146)
|.| ++...|+++|.+++.++ |+.+-+.+|. ++|||||.|.+.++|.++++.+||..
T Consensus 23 VgN~gl~~~~te~~L~~~F~~~----------------G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~ 80 (345)
T 3tht_A 23 VANGGLGNGVSRNQLLPVLEKC----------------GLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKE 80 (345)
T ss_dssp EETCSGGGTCCHHHHHHHHHTT----------------SCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCE
T ss_pred EEcCCCCCCCCHHHHHHHHHhc----------------CCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCc
Confidence 457 57899999999999884 6777777764 57999999999999999999999998
Q ss_pred ccCCC---cEEEEEec
Q 040456 80 WEAQW---LEFLTSAC 92 (146)
Q Consensus 80 w~~~~---Kic~V~yA 92 (146)
.-... ++.-|+|+
T Consensus 81 ~~~~~g~~~~ly~~~~ 96 (345)
T 3tht_A 81 VVDDLGQKITLYLNFV 96 (345)
T ss_dssp EECTTSCEEECEEEEC
T ss_pred cccccCCceEEEEEEe
Confidence 84331 46677777
No 205
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=97.98 E-value=1.3e-05 Score=60.19 Aligned_cols=72 Identities=7% Similarity=0.011 Sum_probs=60.2
Q ss_pred CcCC----CCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccC----hHH----HH
Q 040456 2 IKNI----PNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTT----SVA----AV 69 (146)
Q Consensus 2 irNI----Pnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~----~~~----a~ 69 (146)
|.|+ |...|+..|.+++.+ .|+..-+-+++|..|+.++|||||-|.+ ++. |.
T Consensus 7 VgnL~~~~~~~tte~~Lk~~Fs~----------------fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~ 70 (136)
T 2j8a_A 7 VYPAQDSTTTNIQDISIKNYFKK----------------YGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAF 70 (136)
T ss_dssp EEESSSSCCCCCCHHHHHHHHHT----------------TSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHH
T ss_pred EeCCCCCCCCCCCHHHHHHHHHh----------------cCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHH
Confidence 5688 999999999999987 5799999999999999999999999996 332 78
Q ss_pred HHHH--HhcCCcccCCCcEEEEEe
Q 040456 70 RFAK--AFNKSRWEAQWLEFLTSA 91 (146)
Q Consensus 70 ~f~~--~f~g~~w~~~~Kic~V~y 91 (146)
+++. ..+|..+.. ....|.+
T Consensus 71 kAi~~~~lng~~I~G--r~irV~l 92 (136)
T 2j8a_A 71 SAVRKHESSGCFIMG--FKFEVIL 92 (136)
T ss_dssp HHHHHTTTTCEEETT--EEEEEEE
T ss_pred HHHHHhhhcCCeecC--cEEEEEE
Confidence 8888 568888887 5666655
No 206
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=97.95 E-value=1.8e-05 Score=56.72 Aligned_cols=63 Identities=11% Similarity=0.119 Sum_probs=51.5
Q ss_pred CCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcccCCCcEEEEEeccCcChHHHHHHhcccc
Q 040456 37 RSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWEAQWLEFLTSACGDQGMDALKIHFQEKC 108 (146)
Q Consensus 37 ~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~~~Kic~V~yAriQG~~al~~hf~ns~ 108 (146)
.|...-++++.|- ..|+|||.|.++++|.+.++.+||+.+.. +...|.|+..+.. .++|..+.
T Consensus 41 fG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G--R~i~v~~~~~~~y---~~~fp~a~ 103 (114)
T 3s6e_A 41 HGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFAG--KMITAAYVPLPTY---HNLFPDSM 103 (114)
T ss_dssp TTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEETT--EECEEEEECHHHH---HHHCGGGS
T ss_pred cCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEECC--EEEEEEEEcHHHH---HHhCcccc
Confidence 5777778887663 48999999999999999999999999887 9999999975533 45666554
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.35 E-value=0.00062 Score=52.20 Aligned_cols=55 Identities=9% Similarity=0.102 Sum_probs=47.1
Q ss_pred CCccceEEEceecc----CCcceeEEEEeccChHHHHHHHHHhcCCcccCCCcEEEEEecc
Q 040456 37 RSEYDFLYLPMDFC----HGANLGYAFVNFTTSVAAVRFAKAFNKSRWEAQWLEFLTSACG 93 (146)
Q Consensus 37 ~~~yDFlYLPiDf~----~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~~~Kic~V~yAr 93 (146)
.|...-+.+|.+.. ++..+|++||.|.+.++|.+.++.+||..+.. +...+.|+.
T Consensus 153 ~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g--r~i~~~~~~ 211 (222)
T 3dxb_A 153 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG--RKVVAEVYD 211 (222)
T ss_dssp TSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS--SBCEEEECC
T ss_pred cCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC--eEEEEEEcC
Confidence 46778888886654 44899999999999999999999999999887 888888875
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.39 E-value=0.013 Score=42.53 Aligned_cols=72 Identities=15% Similarity=0.060 Sum_probs=53.9
Q ss_pred CcCCCCc-cCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccC-hHHHHHHHHHhc--C
Q 040456 2 IKNIPNR-FKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTT-SVAAVRFAKAFN--K 77 (146)
Q Consensus 2 irNIPnk-~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~-~~~a~~f~~~f~--g 77 (146)
|.|+|.. .|+++|+++|.+ .|..-|+-+..|-.+ |||=|.+ +.+|..++..++ |
T Consensus 23 v~~l~~~~~sredLke~F~~----------------~G~V~~Vd~~~g~~t------gfVrf~~~~~~A~~av~~ln~~~ 80 (121)
T 1owx_A 23 FSGDLDDQTCREDLHILFSN----------------HGEIKWIDFVRGAKE------GIILFKEKAKEALGKAKDANNGN 80 (121)
T ss_dssp EEESCCSSCCHHHHHHHTCS----------------SCCEEEEECCTTCSE------EEEEESSCHHHHHHHHHHTTTSC
T ss_pred EecCCCCcCCHHHHHHHHHh----------------cCCEEEEEEecCCCE------EEEEECCChHHHHHHHHHhhcCC
Confidence 5689999 999999999976 367788877777664 9999999 789999999985 3
Q ss_pred CcccCCCcEEEEEeccCcChHH
Q 040456 78 SRWEAQWLEFLTSACGDQGMDA 99 (146)
Q Consensus 78 ~~w~~~~Kic~V~yAriQG~~a 99 (146)
..... .++++--+.|.+.
T Consensus 81 ~~i~g----~~~~~evL~GeeE 98 (121)
T 1owx_A 81 LQLRN----KEVTWEVLEGEVE 98 (121)
T ss_dssp BCTTS----SSEEEEECCHHHH
T ss_pred cEEeC----cEEEEEECCCHHH
Confidence 33332 2345556667654
No 209
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.18 E-value=0.063 Score=37.38 Aligned_cols=63 Identities=14% Similarity=0.106 Sum_probs=47.2
Q ss_pred CccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcccCCCcE
Q 040456 7 NRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWEAQWLE 86 (146)
Q Consensus 7 nk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~~~Ki 86 (146)
+-|+.+...++++.+.. .|..=-+.+..|. +||.|.+.+.|....+ ++|.+... |.
T Consensus 22 ~~fd~~l~~~L~~~F~~-------------~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G--r~ 77 (91)
T 2dnr_A 22 NFFDDALIDELLQQFAS-------------FGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN--RT 77 (91)
T ss_dssp CSCCHHHHHHHHHHHHT-------------TCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT--EE
T ss_pred ccCCHHHHHHHHHHHHh-------------CCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC--eE
Confidence 44676555555555431 4555555666665 8999999999999998 99998777 99
Q ss_pred EEEEecc
Q 040456 87 FLTSACG 93 (146)
Q Consensus 87 c~V~yAr 93 (146)
+.|..|+
T Consensus 78 LkV~lkt 84 (91)
T 2dnr_A 78 ITIALKS 84 (91)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 9998886
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.80 E-value=0.076 Score=37.87 Aligned_cols=44 Identities=16% Similarity=0.226 Sum_probs=37.5
Q ss_pred ceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcccCCCcEEEEEecc
Q 040456 41 DFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWEAQWLEFLTSACG 93 (146)
Q Consensus 41 DFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~~~Kic~V~yAr 93 (146)
-|-|||- ..-.-|||.++++|.+....+|+..... +.|.|.+|.
T Consensus 39 tF~~lkS-------FRRirv~F~~~~~A~~AR~~Lh~~~f~g--~~~r~YFgq 82 (104)
T 1wey_A 39 TFQYFKS-------FKRVRINFSNPLSAADARLRLHKTEFLG--KEMKLYFAQ 82 (104)
T ss_dssp EEEEETT-------TTEEEEECSSTTHHHHHHHTSTTSEETT--EECEEECCC
T ss_pred ceeecCc-------ceEEEEEeCChHHHHHHHHHhccceecC--ceeEEEecC
Confidence 3778863 3467899999999999999999988766 999999997
No 211
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=91.69 E-value=0.16 Score=36.37 Aligned_cols=27 Identities=11% Similarity=0.068 Sum_probs=23.7
Q ss_pred CCcceeEEEEeccChHHHHHHHHHhcC
Q 040456 51 HGANLGYAFVNFTTSVAAVRFAKAFNK 77 (146)
Q Consensus 51 ~~~N~GYAFVNf~~~~~a~~f~~~f~g 77 (146)
.....|||||-|.+++.|.+..+.+++
T Consensus 9 ~~~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 9 GKTLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp CSSCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred CccccchhHHHHHHHHhHHHHHHhhcc
Confidence 345899999999999999999988875
No 212
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.51 E-value=0.66 Score=32.42 Aligned_cols=60 Identities=10% Similarity=0.079 Sum_probs=41.8
Q ss_pred ccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcccCCCcEE
Q 040456 8 RFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWEAQWLEF 87 (146)
Q Consensus 8 k~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~~~Kic 87 (146)
.|+.+...++++.+.. .|..=-+.+..|- +||.|.+.+.|....+ ++|.+... +..
T Consensus 32 ~fd~~l~~~L~~~F~~-------------~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~G--r~L 87 (95)
T 1ufw_A 32 EFPEDLRTELMQTLGS-------------YGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKG--RAV 87 (95)
T ss_dssp SCCHHHHHHHHHHHHH-------------HSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETT--EEE
T ss_pred cCCHHHHHHHHHHHHH-------------CCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCC--eEE
Confidence 4565555555555431 2444455555554 9999999999999998 99999877 777
Q ss_pred EEEe
Q 040456 88 LTSA 91 (146)
Q Consensus 88 ~V~y 91 (146)
.|.+
T Consensus 88 ~V~~ 91 (95)
T 1ufw_A 88 KISG 91 (95)
T ss_dssp EEEC
T ss_pred EEec
Confidence 6654
No 213
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=87.30 E-value=2.3 Score=30.79 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=56.6
Q ss_pred CCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcccCC
Q 040456 4 NIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWEAQ 83 (146)
Q Consensus 4 NIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~~ 83 (146)
|||.+.+.+.+..++.+... .-.+.+-=+||.-|. |=|.|=|.+...|-+..-+.+|..++.
T Consensus 28 ~ipDtvndarIr~lve~~~~-----------i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~g- 89 (117)
T 2l9w_A 28 PLSDKVSPSLICQFLQEEIH-----------INEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQG- 89 (117)
T ss_dssp CCCTTCCHHHHHHHHHHHTC-----------CCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETT-
T ss_pred cCCCCCCHHHHHHHHhhhhc-----------cCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecC-
Confidence 89999999999999988521 124778889999997 579999999999999999999999985
Q ss_pred CcEEEEE
Q 040456 84 WLEFLTS 90 (146)
Q Consensus 84 ~Kic~V~ 90 (146)
+++.+.
T Consensus 90 -r~Lr~g 95 (117)
T 2l9w_A 90 -KVIRSG 95 (117)
T ss_dssp -EEEEEE
T ss_pred -eEEEec
Confidence 555443
No 214
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.62 E-value=19 Score=25.40 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=36.1
Q ss_pred CcCCCCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccce-EEEceeccCCcceeEEEEeccChHHHHHHHHH
Q 040456 2 IKNIPNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDF-LYLPMDFCHGANLGYAFVNFTTSVAAVRFAKA 74 (146)
Q Consensus 2 irNIPnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDF-lYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~ 74 (146)
++|||...+++.|.-.|+.. + ++. .|...- -|+| +=|.|-|.++++|.+-.+.
T Consensus 13 V~~lPp~~~~e~L~LYFEn~------r---rsG--GG~V~~v~~~~---------~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 13 VRGLPPAVPDELLTLYFENR------R---RSG--GGPVLSWQRLG---------CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp EESCCTTSCHHHHHHHHHCT------T---TTC--CCCEEEEEEET---------TEEEEEESSHHHHHHHHTC
T ss_pred EECCCCCCChhHheEEEeCC------C---cCC--CceeeEEEEcC---------CcEEEEEcChHHHHHHhcC
Confidence 57999999988777777542 1 111 244433 3666 4579999999999776654
No 215
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=54.48 E-value=6.6 Score=27.51 Aligned_cols=39 Identities=13% Similarity=0.127 Sum_probs=29.9
Q ss_pred CcceeEEEEeccChHHHHHHHHHh-cCCcccCCCcEEEEEecc
Q 040456 52 GANLGYAFVNFTTSVAAVRFAKAF-NKSRWEAQWLEFLTSACG 93 (146)
Q Consensus 52 ~~N~GYAFVNf~~~~~a~~f~~~f-~g~~w~~~~Kic~V~yAr 93 (146)
..-.|+++|-|.+++.|.+..+.+ ||..+.. ...+.+|+
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G---~~~~~~a~ 49 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG---EWTYDDAT 49 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC---EEEEETTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC---ceeccccc
Confidence 344799999999999999999999 8876655 34444443
No 216
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=44.04 E-value=38 Score=26.79 Aligned_cols=60 Identities=18% Similarity=0.280 Sum_probs=42.5
Q ss_pred CCccCHHHHHHHHHhhchhhhhhcccCCCCCCCccceEEEceeccCCcceeEEEEeccChHHHHHHHHHhcCCcccCCC-
Q 040456 6 PNRFKRHDLLQILDNHCWAENMKAKLHSDPCRSEYDFLYLPMDFCHGANLGYAFVNFTTSVAAVRFAKAFNKSRWEAQW- 84 (146)
Q Consensus 6 Pnk~t~~~L~~~ld~~c~~~n~~~~~~~~~~~~~yDFlYLPiDf~~~~N~GYAFVNf~~~~~a~~f~~~f~g~~w~~~~- 84 (146)
..+|+.+.|++.|..+|. .. +-|++|...-+....|| .+...|.. ....+|+.|....
T Consensus 32 g~ky~k~~ll~~i~~~~~----------------~~--f~p~~~~~~~~~~~ffV--~~~~~A~~-l~~~~g~i~~~~~~ 90 (267)
T 3rw6_A 32 GRKYDKAWLLSMIQSKCS----------------VP--FTPIEFHYENTRAQFFV--EDASTASA-LKAVNYKILDRENR 90 (267)
T ss_dssp GGGSCHHHHHHHHHHTCS----------------SC--CCCEEEEEETTEEEEEE--SCHHHHHH-HHHTTSSCBCTTSC
T ss_pred ccccCHHHHHHHHHHhCC----------------CC--cEeEEEEEeCCEEEEEe--CChHHHHH-HHhcCcEEECCCCC
Confidence 468999999999999872 11 35677776666677888 44555554 5578999987654
Q ss_pred cE
Q 040456 85 LE 86 (146)
Q Consensus 85 Ki 86 (146)
|+
T Consensus 91 ki 92 (267)
T 3rw6_A 91 RI 92 (267)
T ss_dssp BC
T ss_pred EE
Confidence 44
No 217
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=24.39 E-value=45 Score=22.28 Aligned_cols=18 Identities=11% Similarity=0.324 Sum_probs=16.6
Q ss_pred CCCCccCHHHHHHHHHhh
Q 040456 4 NIPNRFKRHDLLQILDNH 21 (146)
Q Consensus 4 NIPnk~t~~~L~~~ld~~ 21 (146)
.|+.+.|++.|+++|+..
T Consensus 51 qi~~ki~e~~L~~lL~~i 68 (80)
T 1eij_A 51 RVRSKITDEQLKELLKRV 68 (80)
T ss_dssp SSCCCCCHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHH
Confidence 589999999999999986
No 218
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=22.02 E-value=53 Score=22.01 Aligned_cols=19 Identities=16% Similarity=0.492 Sum_probs=16.9
Q ss_pred CCCCccCHHHHHHHHHhhc
Q 040456 4 NIPNRFKRHDLLQILDNHC 22 (146)
Q Consensus 4 NIPnk~t~~~L~~~ld~~c 22 (146)
.|+.+.|++.|+++|+...
T Consensus 49 qi~~ki~e~~L~~lL~~i~ 67 (81)
T 2fh0_A 49 NVTHKITEAEIVSILNGIA 67 (81)
T ss_dssp CCSCCBCHHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHh
Confidence 5899999999999999863
No 219
>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A
Probab=21.99 E-value=55 Score=24.55 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=26.4
Q ss_pred ceeccCCccee-EEEEeccChHHHHHHHHHhcCC
Q 040456 46 PMDFCHGANLG-YAFVNFTTSVAAVRFAKAFNKS 78 (146)
Q Consensus 46 PiDf~~~~N~G-YAFVNf~~~~~a~~f~~~f~g~ 78 (146)
.++-.-..-+| +.++=|.+.++|..|.+.+-|+
T Consensus 100 VvgS~~~gpMG~~~l~pFa~k~dAe~Fa~~~GG~ 133 (175)
T 2hpu_A 100 VVGSARRGGMGAPEAVPFSSRDEAAAFVLAEGGQ 133 (175)
T ss_dssp EEESSSSCSSSCCCEEEESCHHHHHHHHHHTEEE
T ss_pred EeCCCCCCCCCCCcccCcCCHHHHHHHHHHcCCE
Confidence 34444456678 9999999999999999998763
Done!