Query 040458
Match_columns 732
No_of_seqs 423 out of 2996
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 08:40:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040458.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040458hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 2.3E-46 5E-51 399.8 23.8 260 104-540 1-307 (307)
2 cd05562 Peptidases_S53_like Pe 100.0 2E-43 4.4E-48 368.6 19.1 246 131-575 1-274 (275)
3 PTZ00262 subtilisin-like prote 100.0 5.4E-43 1.2E-47 388.4 18.5 98 450-580 521-618 (639)
4 cd07497 Peptidases_S8_14 Pepti 100.0 7.8E-42 1.7E-46 361.9 20.3 87 448-539 219-311 (311)
5 cd07475 Peptidases_S8_C5a_Pept 100.0 1.4E-41 3E-46 369.6 21.9 270 127-575 2-346 (346)
6 cd07479 Peptidases_S8_SKI-1_li 100.0 6.7E-42 1.5E-46 354.5 18.5 208 128-543 1-254 (255)
7 cd07478 Peptidases_S8_CspA-lik 100.0 8.8E-42 1.9E-46 379.4 20.6 365 132-566 1-455 (455)
8 cd07489 Peptidases_S8_5 Peptid 100.0 9.5E-41 2.1E-45 357.5 20.6 256 124-577 2-300 (312)
9 cd07476 Peptidases_S8_thiazoli 100.0 3.9E-40 8.4E-45 343.0 18.0 210 127-544 2-254 (267)
10 cd07474 Peptidases_S8_subtilis 100.0 7E-39 1.5E-43 340.7 22.0 251 134-573 1-295 (295)
11 cd07493 Peptidases_S8_9 Peptid 100.0 4.8E-39 1E-43 335.6 18.8 206 136-540 1-261 (261)
12 cd07483 Peptidases_S8_Subtilis 100.0 9.1E-39 2E-43 337.8 19.3 72 449-540 220-291 (291)
13 cd05561 Peptidases_S8_4 Peptid 100.0 7.7E-39 1.7E-43 328.6 17.6 199 137-566 1-239 (239)
14 KOG1153 Subtilisin-related pro 100.0 5.7E-39 1.2E-43 332.2 13.6 297 29-540 77-461 (501)
15 cd07481 Peptidases_S8_Bacillop 100.0 5.5E-38 1.2E-42 328.0 19.2 78 448-540 185-264 (264)
16 cd04857 Peptidases_S8_Tripepti 100.0 1.4E-37 3E-42 335.4 22.1 82 448-542 327-412 (412)
17 cd07485 Peptidases_S8_Fervidol 100.0 3.3E-37 7.2E-42 323.8 18.0 219 126-538 1-273 (273)
18 cd04077 Peptidases_S8_PCSK9_Pr 100.0 9.2E-37 2E-41 317.4 19.7 200 127-541 17-255 (255)
19 cd07494 Peptidases_S8_10 Pepti 100.0 2E-36 4.4E-41 319.9 19.3 129 124-294 10-173 (298)
20 cd07487 Peptidases_S8_1 Peptid 100.0 4.2E-36 9E-41 314.1 19.6 217 134-540 1-264 (264)
21 cd07484 Peptidases_S8_Thermita 100.0 3.8E-36 8.3E-41 313.7 18.6 212 113-542 9-259 (260)
22 cd04842 Peptidases_S8_Kp43_pro 100.0 1.6E-35 3.6E-40 314.5 19.9 236 130-540 2-293 (293)
23 cd07490 Peptidases_S8_6 Peptid 100.0 1.8E-35 3.8E-40 307.6 18.5 216 136-540 1-254 (254)
24 cd04847 Peptidases_S8_Subtilis 100.0 8.6E-36 1.9E-40 316.0 15.9 88 451-540 199-291 (291)
25 cd07480 Peptidases_S8_12 Pepti 100.0 4.2E-35 9.1E-40 311.4 17.7 87 465-571 210-296 (297)
26 cd04843 Peptidases_S8_11 Pepti 100.0 7E-35 1.5E-39 304.7 18.3 80 450-540 193-277 (277)
27 cd07496 Peptidases_S8_13 Pepti 100.0 1.4E-34 3.1E-39 305.7 18.0 82 449-538 202-285 (285)
28 cd04059 Peptidases_S8_Protein_ 100.0 1.4E-34 3.1E-39 307.9 17.7 75 448-540 216-297 (297)
29 cd07473 Peptidases_S8_Subtilis 100.0 4.3E-34 9.2E-39 298.1 19.1 211 135-540 2-259 (259)
30 cd07498 Peptidases_S8_15 Pepti 100.0 1.8E-34 3.9E-39 297.8 16.0 201 137-538 1-242 (242)
31 cd07492 Peptidases_S8_8 Peptid 100.0 3.6E-34 7.8E-39 291.6 17.3 192 136-540 1-222 (222)
32 cd07482 Peptidases_S8_Lantibio 100.0 1.1E-33 2.4E-38 300.6 17.4 86 446-538 199-294 (294)
33 cd07491 Peptidases_S8_7 Peptid 100.0 7.1E-34 1.5E-38 292.4 15.2 127 134-293 2-169 (247)
34 cd07477 Peptidases_S8_Subtilis 100.0 1.3E-33 2.9E-38 288.8 16.9 189 136-538 1-229 (229)
35 PF00082 Peptidase_S8: Subtila 100.0 2.4E-34 5.2E-39 303.7 10.9 235 138-575 1-282 (282)
36 KOG4266 Subtilisin kexin isozy 100.0 1.3E-32 2.9E-37 291.8 19.4 348 25-595 42-496 (1033)
37 cd04848 Peptidases_S8_Autotran 100.0 3.7E-32 8.1E-37 284.4 17.2 72 453-540 196-267 (267)
38 cd07488 Peptidases_S8_2 Peptid 100.0 1.2E-29 2.7E-34 260.0 13.2 71 451-538 168-246 (247)
39 KOG1114 Tripeptidyl peptidase 100.0 3.3E-28 7.1E-33 269.3 19.1 101 449-575 453-557 (1304)
40 cd00306 Peptidases_S8_S53 Pept 99.9 1.1E-25 2.3E-30 230.8 17.9 159 209-538 39-241 (241)
41 COG1404 AprE Subtilisin-like s 99.8 7.4E-20 1.6E-24 208.2 17.7 77 448-541 316-398 (508)
42 KOG3526 Subtilisin-like propro 99.8 2.4E-20 5.2E-25 189.0 9.1 96 498-596 377-475 (629)
43 cd04056 Peptidases_S53 Peptida 99.4 1.8E-12 3.8E-17 141.3 10.6 71 228-298 112-199 (361)
44 cd02133 PA_C5a_like PA_C5a_lik 99.3 3.9E-11 8.4E-16 113.1 11.4 116 325-459 25-141 (143)
45 cd02120 PA_subtilisin_like PA_ 99.2 6.1E-11 1.3E-15 109.4 12.0 119 303-426 2-121 (126)
46 PF05922 Inhibitor_I9: Peptida 99.0 1.2E-09 2.6E-14 92.6 6.7 74 34-107 1-82 (82)
47 cd04816 PA_SaNapH_like PA_SaNa 98.7 6.6E-08 1.4E-12 88.5 9.7 96 326-426 17-117 (122)
48 cd02129 PA_hSPPL_like PA_hSPPL 98.7 9E-08 2E-12 86.1 9.9 92 325-423 19-114 (120)
49 PF02225 PA: PA domain; Inter 98.7 2.5E-08 5.4E-13 88.0 6.3 92 326-421 6-101 (101)
50 cd02127 PA_hPAP21_like PA_hPAP 98.6 1.5E-07 3.2E-12 85.2 9.1 83 343-426 21-111 (118)
51 cd02122 PA_GRAIL_like PA _GRAI 98.6 1.5E-07 3.3E-12 87.5 9.4 86 341-426 42-133 (138)
52 cd04818 PA_subtilisin_1 PA_sub 98.6 2.7E-07 5.8E-12 84.0 9.1 85 341-426 25-113 (118)
53 cd02124 PA_PoS1_like PA_PoS1_l 98.5 2E-06 4.4E-11 79.1 12.4 95 328-425 28-123 (129)
54 cd02126 PA_EDEM3_like PA_EDEM3 98.5 5.7E-07 1.2E-11 82.6 8.5 83 343-426 27-121 (126)
55 cd00538 PA PA: Protease-associ 98.4 6.6E-07 1.4E-11 82.3 8.3 84 343-426 30-121 (126)
56 cd02130 PA_ScAPY_like PA_ScAPY 98.4 8.3E-07 1.8E-11 81.3 8.6 92 326-426 22-117 (122)
57 cd02132 PA_GO-like PA_GO-like: 98.4 9.8E-07 2.1E-11 82.6 8.8 81 343-426 48-134 (139)
58 cd04813 PA_1 PA_1: Protease-as 98.4 8.5E-07 1.8E-11 80.1 7.7 80 342-423 26-111 (117)
59 cd02125 PA_VSR PA_VSR: Proteas 98.4 1.9E-06 4.2E-11 79.0 10.1 84 343-426 22-122 (127)
60 PF06280 DUF1034: Fn3-like dom 98.4 5.5E-06 1.2E-10 74.6 12.3 84 640-725 8-112 (112)
61 cd04817 PA_VapT_like PA_VapT_l 98.3 1.3E-06 2.8E-11 80.9 7.5 73 352-424 51-134 (139)
62 cd02123 PA_C_RZF_like PA_C-RZF 98.3 1.9E-06 4.1E-11 82.0 8.7 82 343-424 50-140 (153)
63 cd04819 PA_2 PA_2: Protease-as 98.0 2.4E-05 5.1E-10 72.1 9.1 91 325-425 22-121 (127)
64 KOG3525 Subtilisin-like propro 97.7 0.00053 1.1E-08 76.0 13.6 77 498-575 248-324 (431)
65 COG4934 Predicted protease [Po 97.3 0.0017 3.6E-08 78.0 12.2 43 250-292 345-395 (1174)
66 cd04815 PA_M28_2 PA_M28_2: Pro 97.2 0.0012 2.6E-08 61.4 8.1 75 352-426 34-129 (134)
67 cd02128 PA_TfR PA_TfR: Proteas 97.0 0.002 4.4E-08 62.4 7.5 71 353-423 51-155 (183)
68 cd04814 PA_M28_1 PA_M28_1: Pro 96.8 0.0024 5.3E-08 59.4 6.3 64 325-392 19-100 (142)
69 cd04820 PA_M28_1_1 PA_M28_1_1: 96.6 0.0047 1E-07 57.2 6.6 65 325-393 21-97 (137)
70 KOG2442 Uncharacterized conser 96.5 0.007 1.5E-07 65.6 7.6 73 353-425 91-169 (541)
71 cd04822 PA_M28_1_3 PA_M28_1_3: 96.5 0.0078 1.7E-07 56.8 6.8 65 325-393 19-101 (151)
72 PF14874 PapD-like: Flagellar- 96.4 0.074 1.6E-06 46.7 12.3 94 620-728 8-101 (102)
73 KOG3920 Uncharacterized conser 95.5 0.02 4.3E-07 52.8 4.6 92 343-439 74-175 (193)
74 cd02121 PA_GCPII_like PA_GCPII 95.4 0.023 5E-07 57.1 5.4 59 325-393 44-107 (220)
75 PF10633 NPCBM_assoc: NPCBM-as 95.4 0.074 1.6E-06 44.3 7.5 57 640-696 5-62 (78)
76 cd02131 PA_hNAALADL2_like PA_h 95.2 0.022 4.8E-07 53.1 4.1 40 354-393 37-76 (153)
77 KOG4628 Predicted E3 ubiquitin 93.7 0.16 3.4E-06 54.2 6.8 80 344-423 63-149 (348)
78 PF11614 FixG_C: IG-like fold 91.7 2.7 5.8E-05 37.9 11.3 53 643-696 34-86 (118)
79 cd04821 PA_M28_1_2 PA_M28_1_2: 90.4 0.72 1.6E-05 43.9 6.5 64 325-392 21-103 (157)
80 PF06030 DUF916: Bacterial pro 89.1 4.5 9.7E-05 36.8 10.3 70 640-715 27-120 (121)
81 COG1470 Predicted membrane pro 86.5 2.5 5.5E-05 46.4 8.1 56 641-696 398-454 (513)
82 KOG1114 Tripeptidyl peptidase 80.4 1.2 2.6E-05 52.6 2.8 81 213-293 309-434 (1304)
83 PF00345 PapD_N: Pili and flag 78.0 18 0.00039 32.6 9.4 51 642-694 16-73 (122)
84 TIGR02745 ccoG_rdxA_fixG cytoc 75.1 13 0.00029 41.6 9.0 54 642-696 348-401 (434)
85 COG1470 Predicted membrane pro 72.3 21 0.00045 39.6 9.2 56 640-696 284-345 (513)
86 PF00635 Motile_Sperm: MSP (Ma 69.9 34 0.00073 29.9 8.9 53 641-696 19-71 (109)
87 PF07718 Coatamer_beta_C: Coat 68.5 48 0.001 30.8 9.5 68 641-714 70-138 (140)
88 smart00635 BID_2 Bacterial Ig- 46.4 58 0.0013 27.0 5.8 39 669-716 4-42 (81)
89 PF07610 DUF1573: Protein of u 44.2 80 0.0017 23.0 5.5 43 646-692 2-45 (45)
90 PF07705 CARDB: CARDB; InterP 41.6 1.4E+02 0.003 25.2 7.7 52 640-695 19-72 (101)
91 PF02845 CUE: CUE domain; Int 36.7 36 0.00079 24.4 2.6 25 516-540 5-29 (42)
92 PF08260 Kinin: Insect kinin p 34.4 19 0.0004 16.4 0.5 6 452-457 3-8 (8)
93 PLN03080 Probable beta-xylosid 31.8 95 0.0021 37.7 6.6 52 641-694 685-744 (779)
94 PF12690 BsuPI: Intracellular 31.6 2.1E+02 0.0045 24.0 6.8 53 643-696 3-72 (82)
95 PRK15098 beta-D-glucoside gluc 30.7 1.1E+02 0.0024 37.2 6.9 54 640-696 667-729 (765)
96 PF00927 Transglut_C: Transglu 29.7 3.7E+02 0.0081 23.3 9.4 55 640-696 15-78 (107)
97 PRK15019 CsdA-binding activato 27.5 59 0.0013 30.6 3.0 32 501-533 78-109 (147)
98 PRK13202 ureB urease subunit b 27.3 1.3E+02 0.0028 26.4 4.8 49 642-691 21-83 (104)
99 PRK15308 putative fimbrial pro 26.5 2E+02 0.0044 29.4 6.9 51 643-694 34-100 (234)
100 TIGR03391 FeS_syn_CsdE cystein 26.3 64 0.0014 30.0 3.1 34 500-534 72-105 (138)
101 PF04255 DUF433: Protein of un 23.9 66 0.0014 24.7 2.3 38 499-536 11-54 (56)
102 PRK13203 ureB urease subunit b 23.5 1.5E+02 0.0034 25.8 4.6 50 641-691 19-82 (102)
103 cd00407 Urease_beta Urease bet 23.3 1.7E+02 0.0037 25.5 4.8 50 641-691 19-82 (101)
104 smart00546 CUE Domain that may 23.3 1.2E+02 0.0026 21.7 3.4 25 515-539 5-29 (43)
105 PRK09296 cysteine desufuration 23.3 79 0.0017 29.5 3.0 32 501-533 68-99 (138)
106 PF13940 Ldr_toxin: Toxin Ldr, 23.2 63 0.0014 22.0 1.7 13 507-519 14-26 (35)
107 PF05753 TRAP_beta: Translocon 22.6 4.9E+02 0.011 25.4 8.6 68 640-715 38-114 (181)
108 PF11611 DUF4352: Domain of un 22.6 3.4E+02 0.0073 23.9 7.1 55 641-696 37-103 (123)
109 COG4856 Uncharacterized protei 22.2 3.5E+02 0.0075 29.5 7.8 55 642-696 92-148 (403)
110 COG0065 LeuC 3-isopropylmalate 21.9 90 0.0019 34.1 3.5 61 446-519 353-413 (423)
111 PRK15233 putative fimbrial cha 21.6 4.1E+02 0.009 27.4 8.1 52 641-695 55-111 (246)
112 TIGR00192 urease_beta urease, 21.2 1.9E+02 0.004 25.3 4.6 50 641-691 19-82 (101)
113 PRK13205 ureB urease subunit b 21.2 1.6E+02 0.0036 27.5 4.5 51 640-691 18-82 (162)
114 PF02657 SufE: Fe-S metabolism 21.1 98 0.0021 28.3 3.2 33 501-534 59-91 (125)
115 TIGR01451 B_ant_repeat conserv 21.1 3.6E+02 0.0078 20.4 5.8 31 640-670 12-43 (53)
116 PF00699 Urease_beta: Urease b 20.9 1.9E+02 0.004 25.3 4.5 16 640-655 17-32 (100)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.3e-46 Score=399.75 Aligned_cols=260 Identities=61% Similarity=1.018 Sum_probs=220.3
Q ss_pred eecccCCCCcccCCcCCCCccccccccCCCCCccEEEEEecCCCCCCCCcccCCCCCCCCcccceeecCCCCCCccCCce
Q 040458 104 RHLHTTRSPQFLGLKSSSDSAGLLLKESDFGSDLVIGVIDTGVWPERQSFNDRDLGPVPRKWKGQCVTTNDFPATSCNRK 183 (732)
Q Consensus 104 ~~~~~~~s~~~~gl~~~~~~~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~k 183 (732)
+++++++++.++|+...+. ..+|..+.+|+||+|||||||||++||+|++....+++..|.+.|..+..+....||+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 78 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWG--GSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNK 78 (307)
T ss_pred CCccccCCHHHcCCCCCCC--cccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCe
Confidence 4688999999999998766 23688899999999999999999999999999888999999999999988888889999
Q ss_pred eEeeeecccCccccCCCCCCCCCCCCCCCCCCCcccchhhhhcc------------------------------------
Q 040458 184 LIGARFFSQGYESTNGKMNETTEFRSPRDSDGHGTHTASIAAGS------------------------------------ 227 (732)
Q Consensus 184 iig~~~~~~g~~~~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~------------------------------------ 227 (732)
+++.++|..+++.... .+...+..++.|..||||||||||||+
T Consensus 79 i~g~~~~~~~~~~~~~-~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~ 157 (307)
T cd04852 79 LIGARYFSDGYDAYGG-FNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGC 157 (307)
T ss_pred EEEEEEcccchhhccC-cccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCc
Confidence 9999999987654322 122344567889999999999999873
Q ss_pred -----------cccCCCeEEEecCCCCCCCCcccHHHHHHHhhhcCCceEEEecCCCCCCCCcccccCCCceeecCCCcC
Q 040458 228 -----------AVSDGVDVVSLSVGGVVVPYFLDAIAIAAFGASDHGVFVSASAGNGGPGGLTVTNVAPWVTTVGAGTID 296 (732)
Q Consensus 228 -----------Ai~dgvdVInlSlG~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~G~~~~~~~~~~p~v~tVga~~~~ 296 (732)
|+++|++|||||||........+.+..++..+.++|++||+||||+|+...+.++..||+++||+.+
T Consensus 158 ~~~~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~-- 235 (307)
T cd04852 158 FGSDILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST-- 235 (307)
T ss_pred cHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc--
Confidence 6778999999999986545566788888889999999999999999987777888888999888620
Q ss_pred cccceeEEcCCCeEEeeeeeecCCCCCCCceEEEEEcCCCCCCCCCccccCCCCCCCCCccceEEEEecCCCCcchhhHH
Q 040458 297 RDFPADVHLGNGKIIPGVSVYSGPGLKKDQMYSLVYAGSESGDGYSASLCLEGSLDPAFVRGKIVVCDRGINSRPAKGEV 376 (732)
Q Consensus 297 ~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~ 376 (732)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHcCceEEEEEcCCCCCccccccCCcccEEEEccccHHHHHHHHHhcCCCCCCceEEEEeceeEeccCCCCccccccCC
Q 040458 377 VKKAGGVGMILANGVFDGEGLVADCHVLPATSVGAASGDEIRKYIMSAEKSKSPATATIVFKGTRVNVRPAPVVASFSAR 456 (732)
Q Consensus 377 ~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~ 456 (732)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCcEEeCCCcEEecCCCCCCCCCCCCCCCccceeeecCcccchhHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 040458 457 GPNPETPEILKPDVIAPGLNILAAWPDKVGPSGIPTDKRKTEFNILSGTSMACPHVSGLAALLKAAHPDWSPAAIRSALM 536 (732)
Q Consensus 457 Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~sp~~ik~~L~ 536 (732)
+||||+|||.+|++++..... .........|..++|||||||+|||++|||+|++|+|+|.|||++|+
T Consensus 236 ---------~~~di~apG~~i~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~ 303 (307)
T cd04852 236 ---------LKPDIAAPGVDILAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALM 303 (307)
T ss_pred ---------CccceeeccCceeecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 467999999999999875311 11122234799999999999999999999999999999999999999
Q ss_pred hhcc
Q 040458 537 TTAY 540 (732)
Q Consensus 537 ~TA~ 540 (732)
+||+
T Consensus 304 ~tA~ 307 (307)
T cd04852 304 TTAY 307 (307)
T ss_pred HhcC
Confidence 9985
No 2
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=2e-43 Score=368.58 Aligned_cols=246 Identities=27% Similarity=0.292 Sum_probs=182.0
Q ss_pred CCCCCccEEEEEecCCCCCCCCcccCCCCCCCCcccceeecCCCCCCccCCceeEeeeecccCccccCCCCCCCCCCCCC
Q 040458 131 SDFGSDLVIGVIDTGVWPERQSFNDRDLGPVPRKWKGQCVTTNDFPATSCNRKLIGARFFSQGYESTNGKMNETTEFRSP 210 (732)
Q Consensus 131 ~~~G~GV~VgVIDTGId~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~ 210 (732)
+++|+||+|||||||||.+||+|.+...+.++..+ .+... ....
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l~~~~-----------------------~~~~~-------------~~~~ 44 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGDLPGNV-----------------------NVLGD-------------LDGG 44 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCCCCcce-----------------------eeccc-------------cCCC
Confidence 57999999999999999999966433211111111 11110 1234
Q ss_pred CCCCCCcccchhhhhcc------------------------cccCCCeEEEecCCCCCCCC-cccHHHHHHHhhhcC-Cc
Q 040458 211 RDSDGHGTHTASIAAGS------------------------AVSDGVDVVSLSVGGVVVPY-FLDAIAIAAFGASDH-GV 264 (732)
Q Consensus 211 ~D~~gHGTHVAGi~ag~------------------------Ai~dgvdVInlSlG~~~~~~-~~~~~~~~~~~a~~~-Gi 264 (732)
.|..||||||||||+|. +++.|+||||||||....++ ....+..++.++.++ |+
T Consensus 45 ~d~~gHGT~vAgii~GvAP~a~l~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~~~~~ai~~a~~~~Gv 124 (275)
T cd05562 45 SGGGDEGRAMLEIIHDIAPGAELAFHTAGGGELDFAAAIRALAAAGADIIVDDIGYLNEPFFQDGPIAQAVDEVVASPGV 124 (275)
T ss_pred CCCCchHHHHHHHHhccCCCCEEEEEecCCCHHHHHHHHHHHHHcCCCEEEecccccCCCcccCCHHHHHHHHHHHcCCc
Confidence 67889999999999987 77889999999999864443 334678888888887 99
Q ss_pred eEEEecCCCCCCCC-cccccCCCceeecCCCcCcccceeEEcCCCeEEeeeeeecCCCCCCCceEEEEEcCCCCCCCCCc
Q 040458 265 FVSASAGNGGPGGL-TVTNVAPWVTTVGAGTIDRDFPADVHLGNGKIIPGVSVYSGPGLKKDQMYSLVYAGSESGDGYSA 343 (732)
Q Consensus 265 ~vV~aAGN~G~~~~-~~~~~~p~v~tVga~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~~~~lv~~~~~~~~~~~~ 343 (732)
+||+||||+|.... ..++..|++|+|||...+......
T Consensus 125 lvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~----------------------------------------- 163 (275)
T cd05562 125 LYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFG----------------------------------------- 163 (275)
T ss_pred EEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCcccc-----------------------------------------
Confidence 99999999998543 346788999999985432110000
Q ss_pred cccCCCCCCCCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCCCccccccCCcccEEEEccccHHHHHHHHHh
Q 040458 344 SLCLEGSLDPAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFDGEGLVADCHVLPATSVGAASGDEIRKYIMS 423 (732)
Q Consensus 344 ~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~ 423 (732)
.|. .
T Consensus 164 -s~~----~----------------------------------------------------------------------- 167 (275)
T cd05562 164 -SDP----A----------------------------------------------------------------------- 167 (275)
T ss_pred -ccc----c-----------------------------------------------------------------------
Confidence 000 0
Q ss_pred cCCCCCCceEEEEeceeEeccCCCCccccccCCCCCCCCCCCCCCcEEeCCC-cEEecCCCCCCCCCCCCCCCccceeee
Q 040458 424 AEKSKSPATATIVFKGTRVNVRPAPVVASFSARGPNPETPEILKPDVIAPGL-NILAAWPDKVGPSGIPTDKRKTEFNIL 502 (732)
Q Consensus 424 ~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~-~I~sa~~~~~~~~~~~~~~~~~~y~~~ 502 (732)
+ .......+.||++||+.+ +++||||+|||. ++.+++..+ .|..+
T Consensus 168 -------~------------~~~~s~~~~~~~~~p~~~--~~~~~di~Apgg~~~~~~~~~~-------------~~~~~ 213 (275)
T cd05562 168 -------P------------GGTPSSFDPVGIRLPTPE--VRQKPDVTAPDGVNGTVDGDGD-------------GPPNF 213 (275)
T ss_pred -------c------------CCCcccccCCcccCcCCC--CCcCCeEEcCCcccccCCCcCC-------------ceeec
Confidence 0 000013456788999876 789999999965 455555443 79999
Q ss_pred cCcccchhHHHHHHHHHHhhCCCCCHHHHHHHHHhhcccccCCCCccccCCCCCCCCCCCCCCCcccccccCC
Q 040458 503 SGTSMACPHVSGLAALLKAAHPDWSPAAIRSALMTTAYTVDNRGETMIDESTGNTSTALDFGAGHVHPQKAMN 575 (732)
Q Consensus 503 sGTSMAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~ 575 (732)
+|||||||||||++|||+|++|+|++++||++|++||+++. .+..+..||||+||+.+|++
T Consensus 214 sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~------------~~g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 214 FGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMG------------EPGYDNASGSGLVDADRAVA 274 (275)
T ss_pred ccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccC------------CCCCCCCcCcCcccHHHHhh
Confidence 99999999999999999999999999999999999999874 23455699999999999986
No 3
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=5.4e-43 Score=388.43 Aligned_cols=98 Identities=24% Similarity=0.404 Sum_probs=79.7
Q ss_pred cccccCCCCCCCCCCCCCCcEEeCCCcEEecCCCCCCCCCCCCCCCccceeeecCcccchhHHHHHHHHHHhhCCCCCHH
Q 040458 450 VASFSARGPNPETPEILKPDVIAPGLNILAAWPDKVGPSGIPTDKRKTEFNILSGTSMACPHVSGLAALLKAAHPDWSPA 529 (732)
Q Consensus 450 ~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~sp~ 529 (732)
++.||++|.. ++||+|||++|+++++.+ .|..++|||||||||||+||||++++|+|+++
T Consensus 521 ~s~~Snyg~~-------~VDIaAPG~dI~St~p~g-------------~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~ 580 (639)
T PTZ00262 521 LSPNSFYSAK-------YCQLAAPGTNIYSTFPKN-------------SYRKLNGTSMAAPHVAAIASLILSINPSLSYE 580 (639)
T ss_pred ccccccCCCC-------cceEEeCCCCeeeccCCC-------------ceeecCCCchhHHHHHHHHHHHHhhCCCCCHH
Confidence 3456666532 359999999999999876 79999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccCCCCccccCCCCCCCCCCCCCCCcccccccCCCCccc
Q 040458 530 AIRSALMTTAYTVDNRGETMIDESTGNTSTALDFGAGHVHPQKAMNPGLIY 580 (732)
Q Consensus 530 ~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~~lv~ 580 (732)
+|+++|++||.++... .....| .|+||+.+|++..+-+
T Consensus 581 qV~~iL~~TA~~l~~~------------~n~~~w-gG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 581 EVIRILKESIVQLPSL------------KNKVKW-GGYLDIHHAVNLAIAS 618 (639)
T ss_pred HHHHHHHHhCccCCCC------------CCcccc-CcEEcHHHHHHHHHhc
Confidence 9999999999876421 111223 3899999999866544
No 4
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.8e-42 Score=361.90 Aligned_cols=87 Identities=34% Similarity=0.420 Sum_probs=72.9
Q ss_pred CccccccCCCCCCCCCCCCCCcEEeCCCcEEecCCCCCCCCCCCCCCCccceeeecCcccchhHHHHHHHHHHhhCC---
Q 040458 448 PVVASFSARGPNPETPEILKPDVIAPGLNILAAWPDKVGPSGIPTDKRKTEFNILSGTSMACPHVSGLAALLKAAHP--- 524 (732)
Q Consensus 448 ~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p--- 524 (732)
+.++.||||||+.+ +++||||+|||++|+++.+...... .......|..++|||||||||||++|||+|++|
T Consensus 219 ~~~~~fSs~Gp~~~--g~~kPdv~ApG~~i~s~~~~~~~~~---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~ 293 (311)
T cd07497 219 GDVVSWSSRGPSIA--GDPKPDLAAIGAFAWAPGRVLDSGG---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKE 293 (311)
T ss_pred CCccccccCCCCcc--cCCCCceeccCcceEeecccCCCCc---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhc
Confidence 46899999999987 9999999999999999877542100 011123699999999999999999999999876
Q ss_pred ---CCCHHHHHHHHHhhc
Q 040458 525 ---DWSPAAIRSALMTTA 539 (732)
Q Consensus 525 ---~~sp~~ik~~L~~TA 539 (732)
.++|++||++|++||
T Consensus 294 ~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 294 GVGEYDPFLVRTILMSTA 311 (311)
T ss_pred CCCCCCHHHHHHHHHhcC
Confidence 689999999999997
No 5
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=1.4e-41 Score=369.58 Aligned_cols=270 Identities=32% Similarity=0.411 Sum_probs=197.8
Q ss_pred ccccCC-CCCccEEEEEecCCCCCCCCcccCCCCCCCC-----cccceeecCCCCCCccCCceeEeeeecccCccccCCC
Q 040458 127 LLKESD-FGSDLVIGVIDTGVWPERQSFNDRDLGPVPR-----KWKGQCVTTNDFPATSCNRKLIGARFFSQGYESTNGK 200 (732)
Q Consensus 127 ~~~~~~-~G~GV~VgVIDTGId~~Hp~f~~~~~~~~~~-----~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~ 200 (732)
+|+++. +|+||+|||||||||++||+|.+....+... .+...+.. -...+++.+++.+++|.++.+.
T Consensus 2 ~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---- 74 (346)
T cd07475 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGI---GYGKYYNEKVPFAYNYADNNDD---- 74 (346)
T ss_pred hhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccC---CCCcccccCCCeeEcCCCCCCc----
Confidence 688877 9999999999999999999998764332211 12222221 1223567889998888874211
Q ss_pred CCCCCCCCCCCCCCCCcccchhhhhcc--------------------------------------------cccCCCeEE
Q 040458 201 MNETTEFRSPRDSDGHGTHTASIAAGS--------------------------------------------AVSDGVDVV 236 (732)
Q Consensus 201 ~~~~~~~~~~~D~~gHGTHVAGi~ag~--------------------------------------------Ai~dgvdVI 236 (732)
.....|..+|||||||||+|. +++.|++||
T Consensus 75 ------~~~~~~~~~HGT~vagiiag~~~~~~~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vi 148 (346)
T cd07475 75 ------ILDEDDGSSHGMHVAGIVAGNGDEEDNGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVI 148 (346)
T ss_pred ------cCCCCCCCCcHHHHHHHHhcCCCccccCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 111457899999999999863 456699999
Q ss_pred EecCCCCCCC-CcccHHHHHHHhhhcCCceEEEecCCCCCCCCcccc----------------cCCCceeecCCCcCccc
Q 040458 237 SLSVGGVVVP-YFLDAIAIAAFGASDHGVFVSASAGNGGPGGLTVTN----------------VAPWVTTVGAGTIDRDF 299 (732)
Q Consensus 237 nlSlG~~~~~-~~~~~~~~~~~~a~~~Gi~vV~aAGN~G~~~~~~~~----------------~~p~v~tVga~~~~~~~ 299 (732)
|||||..... .....+..++.++.++|++||+||||+|........ ..+++++|++..
T Consensus 149 n~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~----- 223 (346)
T cd07475 149 NMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASAN----- 223 (346)
T ss_pred EECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeecc-----
Confidence 9999986332 445677888889999999999999999865332111 111222222110
Q ss_pred ceeEEcCCCeEEeeeeeecCCCCCCCceEEEEEcCCCCCCCCCccccCCCCCCCCCccceEEEEecCCCCcchhhHHHHH
Q 040458 300 PADVHLGNGKIIPGVSVYSGPGLKKDQMYSLVYAGSESGDGYSASLCLEGSLDPAFVRGKIVVCDRGINSRPAKGEVVKK 379 (732)
Q Consensus 300 ~~~~~~~~g~~~~~~s~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~ 379 (732)
T Consensus 224 -------------------------------------------------------------------------------- 223 (346)
T cd07475 224 -------------------------------------------------------------------------------- 223 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEEEcCCCCCccccccCCcccEEEEccccHHHHHHHHHhcCCCCCCceEEEEeceeEeccCCCCccccccCCCCC
Q 040458 380 AGGVGMILANGVFDGEGLVADCHVLPATSVGAASGDEIRKYIMSAEKSKSPATATIVFKGTRVNVRPAPVVASFSARGPN 459 (732)
Q Consensus 380 ~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~ 459 (732)
..........++.||+|||+
T Consensus 224 ------------------------------------------------------------~~~~~~~~~~~~~~S~~G~~ 243 (346)
T cd07475 224 ------------------------------------------------------------KKVPNPNGGQMSGFSSWGPT 243 (346)
T ss_pred ------------------------------------------------------------cccCCCCCCccCCCcCCCCC
Confidence 00001233568899999999
Q ss_pred CCCCCCCCCcEEeCCCcEEecCCCCCCCCCCCCCCCccceeeecCcccchhHHHHHHHHHHhh----CCCCCHHH----H
Q 040458 460 PETPEILKPDVIAPGLNILAAWPDKVGPSGIPTDKRKTEFNILSGTSMACPHVSGLAALLKAA----HPDWSPAA----I 531 (732)
Q Consensus 460 ~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~----~p~~sp~~----i 531 (732)
.. .++||||+|||.+|+++...+ .|..++|||||||+|||++|||+|+ +|.|++.+ |
T Consensus 244 ~~--~~~~pdi~apG~~i~s~~~~~-------------~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~i 308 (346)
T cd07475 244 PD--LDLKPDITAPGGNIYSTVNDN-------------TYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLV 308 (346)
T ss_pred cc--cCcCCeEEeCCCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHH
Confidence 86 899999999999999998765 7999999999999999999999997 79999887 7
Q ss_pred HHHHHhhcccccCCCCccccCCCCCCCCCCCCCCCcccccccCC
Q 040458 532 RSALMTTAYTVDNRGETMIDESTGNTSTALDFGAGHVHPQKAMN 575 (732)
Q Consensus 532 k~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~ 575 (732)
|.+|++||.+... ....+.++.+.++|+|+||+.+|++
T Consensus 309 k~~l~~ta~~~~~------~~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 309 KNLLMNTATPPLD------SEDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred HHHHHhcCCcccc------cCCCCccCCccccCcchhcHHHhhC
Confidence 8889999985321 1123566788899999999999985
No 6
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=6.7e-42 Score=354.53 Aligned_cols=208 Identities=27% Similarity=0.357 Sum_probs=164.8
Q ss_pred cccCCCCCccEEEEEecCCCCCCCCcccCCCCCCCCcccceeecCCCCCCccCCceeEeeeecccCccccCCCCCCCCCC
Q 040458 128 LKESDFGSDLVIGVIDTGVWPERQSFNDRDLGPVPRKWKGQCVTTNDFPATSCNRKLIGARFFSQGYESTNGKMNETTEF 207 (732)
Q Consensus 128 ~~~~~~G~GV~VgVIDTGId~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~ 207 (732)
|.++++|+||+|||||||||.+||+|++.. ...+|.. .
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~----------------------------~~~~~~~--------------~ 38 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVK----------------------------ERTNWTN--------------E 38 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccc----------------------------cccccCC--------------C
Confidence 788999999999999999999999996320 0011111 1
Q ss_pred CCCCCCCCCcccchhhhhcc------------------------------------cccCCCeEEEecCCCCCCCCcccH
Q 040458 208 RSPRDSDGHGTHTASIAAGS------------------------------------AVSDGVDVVSLSVGGVVVPYFLDA 251 (732)
Q Consensus 208 ~~~~D~~gHGTHVAGi~ag~------------------------------------Ai~dgvdVInlSlG~~~~~~~~~~ 251 (732)
....|+.||||||||||+|+ ++++++||||||||... +...+
T Consensus 39 ~~~~d~~gHGT~VAGiIa~~~~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~--~~~~~ 116 (255)
T cd07479 39 KTLDDGLGHGTFVAGVIASSREQCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGGPD--FMDKP 116 (255)
T ss_pred CCCCCCCCcHHHHHHHHHccCCCceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccCCC--CCCcH
Confidence 23467889999999999985 66789999999999743 23456
Q ss_pred HHHHHHhhhcCCceEEEecCCCCCCCCc--ccccCCCceeecCCCcCcccceeEEcCCCeEEeeeeeecCCCCCCCceEE
Q 040458 252 IAIAAFGASDHGVFVSASAGNGGPGGLT--VTNVAPWVTTVGAGTIDRDFPADVHLGNGKIIPGVSVYSGPGLKKDQMYS 329 (732)
Q Consensus 252 ~~~~~~~a~~~Gi~vV~aAGN~G~~~~~--~~~~~p~v~tVga~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~~~~ 329 (732)
+..++.++.++|++||+||||+|+...+ .+...+++|+||+..
T Consensus 117 ~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~----------------------------------- 161 (255)
T cd07479 117 FVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGID----------------------------------- 161 (255)
T ss_pred HHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeec-----------------------------------
Confidence 7777788899999999999999975433 334556677776621
Q ss_pred EEEcCCCCCCCCCccccCCCCCCCCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCCCccccccCCcccEEEE
Q 040458 330 LVYAGSESGDGYSASLCLEGSLDPAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFDGEGLVADCHVLPATSV 409 (732)
Q Consensus 330 lv~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~v 409 (732)
T Consensus 162 -------------------------------------------------------------------------------- 161 (255)
T cd07479 162 -------------------------------------------------------------------------------- 161 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccHHHHHHHHHhcCCCCCCceEEEEeceeEeccCCCCccccccCCCCCCC----CCCCCCCcEEeCCCcEEecCCCCC
Q 040458 410 GAASGDEIRKYIMSAEKSKSPATATIVFKGTRVNVRPAPVVASFSARGPNPE----TPEILKPDVIAPGLNILAAWPDKV 485 (732)
Q Consensus 410 ~~~~g~~l~~~~~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~----~~~~lKPDI~APG~~I~sa~~~~~ 485 (732)
..+.++.|||+|++.. ..+++||||+|||.+|+++...+
T Consensus 162 ------------------------------------~~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~~- 204 (255)
T cd07479 162 ------------------------------------FDDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLKG- 204 (255)
T ss_pred ------------------------------------cCCccccccCCCCCcccccCCCCCcCccEEecCCCeeccccCC-
Confidence 1235688999996521 13788999999999999987654
Q ss_pred CCCCCCCCCCccceeeecCcccchhHHHHHHHHHHhhCC----CCCHHHHHHHHHhhccccc
Q 040458 486 GPSGIPTDKRKTEFNILSGTSMACPHVSGLAALLKAAHP----DWSPAAIRSALMTTAYTVD 543 (732)
Q Consensus 486 ~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p----~~sp~~ik~~L~~TA~~~~ 543 (732)
.|..++|||||||||||++|||+|++| .++|++||++|++||++++
T Consensus 205 ------------~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 205 ------------GCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred ------------CeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 789999999999999999999999998 7999999999999999874
No 7
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=8.8e-42 Score=379.39 Aligned_cols=365 Identities=23% Similarity=0.293 Sum_probs=204.5
Q ss_pred CCCCccEEEEEecCCCCCCCCcccC-CCCCCCCcccceeecCCCCCCccCCceeEeeeeccc-CccccCCCCCCCCCCCC
Q 040458 132 DFGSDLVIGVIDTGVWPERQSFNDR-DLGPVPRKWKGQCVTTNDFPATSCNRKLIGARFFSQ-GYESTNGKMNETTEFRS 209 (732)
Q Consensus 132 ~~G~GV~VgVIDTGId~~Hp~f~~~-~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~-g~~~~~~~~~~~~~~~~ 209 (732)
++|+||+|||||||||+.||+|++. +.+++...|++....+..- ....+...+.. ..+.... ...+.+...
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~------~~~~~~~~~~~~~i~~~~~-~~~p~~~~~ 73 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPP------GGYYGGGEYTEEIINAALA-SDNPYDIVP 73 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCC------ccccCceEEeHHHHHHHHh-cCCccccCc
Confidence 4799999999999999999999855 5678999999987643211 11111111111 0000000 011122234
Q ss_pred CCCCCCCcccchhhhhcc-------------------------c------------------------cc-----CCCeE
Q 040458 210 PRDSDGHGTHTASIAAGS-------------------------A------------------------VS-----DGVDV 235 (732)
Q Consensus 210 ~~D~~gHGTHVAGi~ag~-------------------------A------------------------i~-----dgvdV 235 (732)
..|+.||||||||||||+ . ++ ....|
T Consensus 74 ~~D~~GHGThvAGIiag~~~~~~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~~~p~V 153 (455)
T cd07478 74 SRDENGHGTHVAGIAAGNGDNNPDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKPLV 153 (455)
T ss_pred CCCCCCchHHHHHHHhcCCCCCCCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHHhCCCeE
Confidence 578999999999999987 0 00 12459
Q ss_pred EEecCCCCCCCC-cccHHHHHHHhhhcC-CceEEEecCCCCCCCCcccccC-C----C--ceeecCCCcCcccce-----
Q 040458 236 VSLSVGGVVVPY-FLDAIAIAAFGASDH-GVFVSASAGNGGPGGLTVTNVA-P----W--VTTVGAGTIDRDFPA----- 301 (732)
Q Consensus 236 InlSlG~~~~~~-~~~~~~~~~~~a~~~-Gi~vV~aAGN~G~~~~~~~~~~-p----~--v~tVga~~~~~~~~~----- 301 (732)
||||||...+++ ..++++.++..+.++ |++||+||||+|....+..... + - -+.|+... ..+.-
T Consensus 154 InlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~~--~~~~~eiW~~ 231 (455)
T cd07478 154 INISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGE--KGFNLEIWGD 231 (455)
T ss_pred EEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCCC--cceEEEEecC
Confidence 999999875444 456778888877766 9999999999997544333210 0 0 01222110 11100
Q ss_pred -------eEEcCCCeEEeeeeeecCCCCCCCceEEEEEcCCCCCCCCCccccCCCCCCCCCccceEEEEecCCCCcchhh
Q 040458 302 -------DVHLGNGKIIPGVSVYSGPGLKKDQMYSLVYAGSESGDGYSASLCLEGSLDPAFVRGKIVVCDRGINSRPAKG 374 (732)
Q Consensus 302 -------~~~~~~g~~~~~~s~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~ 374 (732)
.+....|+........... ...+.+.+... ..|.... .+....|.-.+.- +.
T Consensus 232 ~~d~~~v~i~sP~Ge~~~~i~~~~~~----~~~~~~~~~~t--------~i~v~y~-~~~~~~g~~~i~i--------~~ 290 (455)
T cd07478 232 FPDRFSVSIISPSGESSGRINPGIGG----SESYKFVFEGT--------TVYVYYY-LPEPYTGDQLIFI--------RF 290 (455)
T ss_pred CCCEEEEEEECCCCCccCccCcCCCc----ceeEEEEECCe--------EEEEEEc-CCCCCCCCeEEEE--------Ec
Confidence 1111111111000000000 00001111000 0000000 0011111111111 11
Q ss_pred HHHHHcCceEEEEEcCCCCCccccccCCcccEEEEccccHHHHHHHHHhcCCCCCCceEEEEece------eEeccCC-C
Q 040458 375 EVVKKAGGVGMILANGVFDGEGLVADCHVLPATSVGAASGDEIRKYIMSAEKSKSPATATIVFKG------TRVNVRP-A 447 (732)
Q Consensus 375 ~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~~~~~i~~~~------t~~~~~~-~ 447 (732)
.+ ...|-+-+.+.........+ ..++|...+...+...+ ... +..+|+.+. ++..... .
T Consensus 291 ~~-~~~GiW~i~~~~~~~~~g~~---~~Wlp~~~~~~~~t~f~----~~~------~~~tit~Pa~~~~vitVga~~~~~ 356 (455)
T cd07478 291 KN-IKPGIWKIRLTGVSITDGRF---DAWLPSRGLLSENTRFL----EPD------PYTTLTIPGTARSVITVGAYNQNN 356 (455)
T ss_pred cC-CCccceEEEEEeccCCCceE---EEEecCcCcCCCCCEee----cCC------CCceEecCCCCCCcEEEEEEeCCC
Confidence 11 22355555555443321111 11233222211111111 111 334444443 2222222 3
Q ss_pred CccccccCCCCCCCCCCCCCCcEEeCCCcEEecCCCCCCCCCCCCCCCccceeeecCcccchhHHHHHHHHHHhhC----
Q 040458 448 PVVASFSARGPNPETPEILKPDVIAPGLNILAAWPDKVGPSGIPTDKRKTEFNILSGTSMACPHVSGLAALLKAAH---- 523 (732)
Q Consensus 448 ~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~---- 523 (732)
+.++.||||||+.+ +++||||+|||++|+++++.+ .|..++|||||||||||++|||+|.+
T Consensus 357 ~~~~~~Ss~G~~~~--~~~kpdi~APG~~i~s~~~~~-------------~~~~~sGTS~Aap~vaG~aALl~~~~~~~~ 421 (455)
T cd07478 357 NSIAIFSGRGPTRD--GRIKPDIAAPGVNILTASPGG-------------GYTTRSGTSVAAAIVAGACALLLQWGIVRG 421 (455)
T ss_pred CcccCccCCCcCCC--CCcCceEEecCCCEEEeecCC-------------cEEeeCcHHHHHHHHHHHHHHHHHhchhcc
Confidence 56999999999987 899999999999999999875 79999999999999999999999975
Q ss_pred --CCCCHHHHHHHHHhhcccccCCCCccccCCCCCCCCCCCCCCC
Q 040458 524 --PDWSPAAIRSALMTTAYTVDNRGETMIDESTGNTSTALDFGAG 566 (732)
Q Consensus 524 --p~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G 566 (732)
|.|++++||++|++||+++. +..+++.+||||
T Consensus 422 ~~p~~~~~~ik~~L~~tA~~~~-----------~~~~pn~~~GyG 455 (455)
T cd07478 422 NDPYLYGEKIKTYLIRGARRRP-----------GDEYPNPEWGYG 455 (455)
T ss_pred CCCCCCHHHHHHHHHHhCccCC-----------CCCCCCCCCCCC
Confidence 56799999999999999874 245778899998
No 8
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.5e-41 Score=357.46 Aligned_cols=256 Identities=36% Similarity=0.448 Sum_probs=195.2
Q ss_pred cccccccCCCCCccEEEEEecCCCCCCCCcccCCCCCCCCcccceeecCCCCCCccCCceeEeeeecccC-ccccCCCCC
Q 040458 124 AGLLLKESDFGSDLVIGVIDTGVWPERQSFNDRDLGPVPRKWKGQCVTTNDFPATSCNRKLIGARFFSQG-YESTNGKMN 202 (732)
Q Consensus 124 ~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g-~~~~~~~~~ 202 (732)
++.+|+.+++|+||+|||||+|||++||+|.+.-.+ +.++.+.++|... +... +
T Consensus 2 v~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~---------------------~~~~~~~~d~~~~~~~~~----~ 56 (312)
T cd07489 2 VDKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP---------------------GCKVAGGYDFVGDDYDGT----N 56 (312)
T ss_pred hhhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC---------------------CceeccccccCCcccccc----c
Confidence 356899999999999999999999999999754110 1133444444331 1100 1
Q ss_pred CCCCCCCCCCCCCCcccchhhhhcc--------------------------------------cccCCCeEEEecCCCCC
Q 040458 203 ETTEFRSPRDSDGHGTHTASIAAGS--------------------------------------AVSDGVDVVSLSVGGVV 244 (732)
Q Consensus 203 ~~~~~~~~~D~~gHGTHVAGi~ag~--------------------------------------Ai~dgvdVInlSlG~~~ 244 (732)
...+...+.|..||||||||||+|. ++++|++|||+|||...
T Consensus 57 ~~~~~~~~~d~~gHGT~vAgiia~~~~~~~~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~g~~~ 136 (312)
T cd07489 57 PPVPDDDPMDCQGHGTHVAGIIAANPNAYGFTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLGGPS 136 (312)
T ss_pred CCCCCCCCCCCCCcHHHHHHHHhcCCCCCceEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCcCC
Confidence 1222345678899999999999875 77889999999999854
Q ss_pred CCCcccHHHHHHHhhhcCCceEEEecCCCCCCCC---cccccCCCceeecCCCcCcccceeEEcCCCeEEeeeeeecCCC
Q 040458 245 VPYFLDAIAIAAFGASDHGVFVSASAGNGGPGGL---TVTNVAPWVTTVGAGTIDRDFPADVHLGNGKIIPGVSVYSGPG 321 (732)
Q Consensus 245 ~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~G~~~~---~~~~~~p~v~tVga~~~~~~~~~~~~~~~g~~~~~~s~~~~~~ 321 (732)
. +..+.+...+.++.++|+++|+||||+|.... ..+...+++++||+.
T Consensus 137 ~-~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~---------------------------- 187 (312)
T cd07489 137 G-WSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASV---------------------------- 187 (312)
T ss_pred C-CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEe----------------------------
Confidence 3 33477888888899999999999999986432 122334455555431
Q ss_pred CCCCceEEEEEcCCCCCCCCCccccCCCCCCCCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCCCccccccC
Q 040458 322 LKKDQMYSLVYAGSESGDGYSASLCLEGSLDPAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFDGEGLVADC 401 (732)
Q Consensus 322 ~~~~~~~~lv~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~ 401 (732)
T Consensus 188 -------------------------------------------------------------------------------- 187 (312)
T cd07489 188 -------------------------------------------------------------------------------- 187 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccEEEEccccHHHHHHHHHhcCCCCCCceEEEEeceeEeccCCCCccccccCCCCCCCCCCCCCCcEEeCCCcEEecC
Q 040458 402 HVLPATSVGAASGDEIRKYIMSAEKSKSPATATIVFKGTRVNVRPAPVVASFSARGPNPETPEILKPDVIAPGLNILAAW 481 (732)
Q Consensus 402 ~~~p~~~v~~~~g~~l~~~~~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~ 481 (732)
-+.||+|||+.+ ...||||+|||.+|++++
T Consensus 188 ------------------------------------------------~~~~s~~g~~~~--~~~kpdv~ApG~~i~~~~ 217 (312)
T cd07489 188 ------------------------------------------------DSYFSSWGPTNE--LYLKPDVAAPGGNILSTY 217 (312)
T ss_pred ------------------------------------------------cCCccCCCCCCC--CCcCccEEcCCCCEEEee
Confidence 056899999987 889999999999999998
Q ss_pred CCCCCCCCCCCCCCccceeeecCcccchhHHHHHHHHHHhhC-CCCCHHHHHHHHHhhcccccCCCCccccCCCCCCCCC
Q 040458 482 PDKVGPSGIPTDKRKTEFNILSGTSMACPHVSGLAALLKAAH-PDWSPAAIRSALMTTAYTVDNRGETMIDESTGNTSTA 560 (732)
Q Consensus 482 ~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~-p~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~ 560 (732)
+...+ .|..++|||||||+|||++|||+|++ |.+++.+||++|++||.++...+..-. ...+++.
T Consensus 218 ~~~~~-----------~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~---~~~~~~~ 283 (312)
T cd07489 218 PLAGG-----------GYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSA---LPDLAPV 283 (312)
T ss_pred eCCCC-----------ceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCcc---ccCCCCH
Confidence 87632 59999999999999999999999999 999999999999999998764332111 1124677
Q ss_pred CCCCCCcccccccCCCC
Q 040458 561 LDFGAGHVHPQKAMNPG 577 (732)
Q Consensus 561 ~~~G~G~vd~~~A~~~~ 577 (732)
.++|+|+||+.+|++..
T Consensus 284 ~~~G~G~vn~~~a~~~~ 300 (312)
T cd07489 284 AQQGAGLVNAYKALYAT 300 (312)
T ss_pred hhcCcceeeHHHHhcCC
Confidence 89999999999999854
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=3.9e-40 Score=342.98 Aligned_cols=210 Identities=30% Similarity=0.355 Sum_probs=170.4
Q ss_pred ccccCCCCCccEEEEEecCCCCCCCCcccCCCCCCCCcccceeecCCCCCCccCCceeEeeeecccCccccCCCCCCCCC
Q 040458 127 LLKESDFGSDLVIGVIDTGVWPERQSFNDRDLGPVPRKWKGQCVTTNDFPATSCNRKLIGARFFSQGYESTNGKMNETTE 206 (732)
Q Consensus 127 ~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~ 206 (732)
+|..+++|+||+|||||+|||++||+|++....+. ..+.. .
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~--------------------------~~~~~-------------~ 42 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPL--------------------------FTYAA-------------A 42 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccc--------------------------cCccc-------------c
Confidence 79999999999999999999999999975421100 00000 0
Q ss_pred CCCCCCCCCCcccchhhhhcc--------------------------------------cccCCCeEEEecCCCCCC-CC
Q 040458 207 FRSPRDSDGHGTHTASIAAGS--------------------------------------AVSDGVDVVSLSVGGVVV-PY 247 (732)
Q Consensus 207 ~~~~~D~~gHGTHVAGi~ag~--------------------------------------Ai~dgvdVInlSlG~~~~-~~ 247 (732)
.....|..+|||||||||+|+ |++.|+||||||||.... ..
T Consensus 43 ~~~~~~~~gHGT~VAgii~g~~~~~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~~ 122 (267)
T cd07476 43 ACQDGGASAHGTHVASLIFGQPCSSVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQTGE 122 (267)
T ss_pred CCCCCCCCCcHHHHHHHHhcCCCCCceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCCCCC
Confidence 123457789999999999966 677899999999997532 23
Q ss_pred cccHHHHHHHhhhcCCceEEEecCCCCCCCCcccccCCCceeecCCCcCcccceeEEcCCCeEEeeeeeecCCCCCCCce
Q 040458 248 FLDAIAIAAFGASDHGVFVSASAGNGGPGGLTVTNVAPWVTTVGAGTIDRDFPADVHLGNGKIIPGVSVYSGPGLKKDQM 327 (732)
Q Consensus 248 ~~~~~~~~~~~a~~~Gi~vV~aAGN~G~~~~~~~~~~p~v~tVga~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~~ 327 (732)
....+..++.+|.++|++||+||||+|.....+++..|++++||+...
T Consensus 123 ~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~-------------------------------- 170 (267)
T cd07476 123 ADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDD-------------------------------- 170 (267)
T ss_pred CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecC--------------------------------
Confidence 345678888889999999999999999877777788889999987310
Q ss_pred EEEEEcCCCCCCCCCccccCCCCCCCCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCCCccccccCCcccEE
Q 040458 328 YSLVYAGSESGDGYSASLCLEGSLDPAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFDGEGLVADCHVLPAT 407 (732)
Q Consensus 328 ~~lv~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~ 407 (732)
T Consensus 171 -------------------------------------------------------------------------------- 170 (267)
T cd07476 171 -------------------------------------------------------------------------------- 170 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEccccHHHHHHHHHhcCCCCCCceEEEEeceeEeccCCCCccccccCCCCCCCCCCCCCCcEEeCCCcEEecCCCCCCC
Q 040458 408 SVGAASGDEIRKYIMSAEKSKSPATATIVFKGTRVNVRPAPVVASFSARGPNPETPEILKPDVIAPGLNILAAWPDKVGP 487 (732)
Q Consensus 408 ~v~~~~g~~l~~~~~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~ 487 (732)
.+.++.||+||+.. .||||+|||.+|+++.+.+
T Consensus 171 ---------------------------------------~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~~--- 203 (267)
T cd07476 171 ---------------------------------------DGLPLKFSNWGADY-----RKKGILAPGENILGAALGG--- 203 (267)
T ss_pred ---------------------------------------CCCeeeecCCCCCC-----CCceEEecCCCceeecCCC---
Confidence 12346789999864 3789999999999998875
Q ss_pred CCCCCCCCccceeeecCcccchhHHHHHHHHHHhhCCC----CCHHHHHHHHHhhcccccC
Q 040458 488 SGIPTDKRKTEFNILSGTSMACPHVSGLAALLKAAHPD----WSPAAIRSALMTTAYTVDN 544 (732)
Q Consensus 488 ~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~----~sp~~ik~~L~~TA~~~~~ 544 (732)
.|..++|||||||||||++|||+|++|. ++|++||++|++||+++..
T Consensus 204 ----------~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 204 ----------EVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred ----------CeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 7999999999999999999999999887 9999999999999999864
No 10
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7e-39 Score=340.71 Aligned_cols=251 Identities=39% Similarity=0.546 Sum_probs=184.4
Q ss_pred CCccEEEEEecCCCCCCCCcccCCCCCCCCcccceeecCCCCCCccCCceeEeeeecccCc-cccCCCCC-CCCCCCCCC
Q 040458 134 GSDLVIGVIDTGVWPERQSFNDRDLGPVPRKWKGQCVTTNDFPATSCNRKLIGARFFSQGY-ESTNGKMN-ETTEFRSPR 211 (732)
Q Consensus 134 G~GV~VgVIDTGId~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~-~~~~~~~~-~~~~~~~~~ 211 (732)
|+||+|||||+|||++||+|.+.. +.+.++...++|.... +....... .........
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG---------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAG 59 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC---------------------CCCCceeeeeECccCCCCcccccccccccccCCCC
Confidence 899999999999999999997531 1344555566554421 11000000 000112245
Q ss_pred CCCCCcccchhhhhcc---------------------------------------cccCCCeEEEecCCCCCCCCcccHH
Q 040458 212 DSDGHGTHTASIAAGS---------------------------------------AVSDGVDVVSLSVGGVVVPYFLDAI 252 (732)
Q Consensus 212 D~~gHGTHVAGi~ag~---------------------------------------Ai~dgvdVInlSlG~~~~~~~~~~~ 252 (732)
|..+|||||||+|+|+ +++++++|||||||..... ..+.+
T Consensus 60 ~~~~HGT~vAgiiag~~~n~~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~~~-~~~~~ 138 (295)
T cd07474 60 DATGHGTHVAGIIAGNGVNVGTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSVNG-PDDPD 138 (295)
T ss_pred CCCCcHHHHHHHHhcCCCccCceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCC-CCCHH
Confidence 6899999999999955 6778999999999975332 35678
Q ss_pred HHHHHhhhcCCceEEEecCCCCCCCCcc--cccCCCceeecCCCcCcccceeEEcCCCeEEeeeeeecCCCCCCCceEEE
Q 040458 253 AIAAFGASDHGVFVSASAGNGGPGGLTV--TNVAPWVTTVGAGTIDRDFPADVHLGNGKIIPGVSVYSGPGLKKDQMYSL 330 (732)
Q Consensus 253 ~~~~~~a~~~Gi~vV~aAGN~G~~~~~~--~~~~p~v~tVga~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~~~~l 330 (732)
..++.++.++|+++|+||||+|...... +...+++++||+......
T Consensus 139 ~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~-------------------------------- 186 (295)
T cd07474 139 AIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV-------------------------------- 186 (295)
T ss_pred HHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc--------------------------------
Confidence 8888899999999999999998765543 456788888887420000
Q ss_pred EEcCCCCCCCCCccccCCCCCCCCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCCCccccccCCcccEEEEc
Q 040458 331 VYAGSESGDGYSASLCLEGSLDPAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFDGEGLVADCHVLPATSVG 410 (732)
Q Consensus 331 v~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~v~ 410 (732)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccHHHHHHHHHhcCCCCCCceEEEEeceeEeccCCCCccccc-cCCCCCCCCCCCCCCcEEeCCCcEEecCCCCCCCCC
Q 040458 411 AASGDEIRKYIMSAEKSKSPATATIVFKGTRVNVRPAPVVASF-SARGPNPETPEILKPDVIAPGLNILAAWPDKVGPSG 489 (732)
Q Consensus 411 ~~~g~~l~~~~~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~f-Ss~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~ 489 (732)
........| |+.|+... ..+||||+|||.+|++++.....
T Consensus 187 ----------------------------------~~~~~~~~~~s~~~~~~~--~~~kpdv~apG~~i~~~~~~~~~--- 227 (295)
T cd07474 187 ----------------------------------AEADTVGPSSSRGPPTSD--SAIKPDIVAPGVDIMSTAPGSGT--- 227 (295)
T ss_pred ----------------------------------CCCCceeccCCCCCCCCC--CCcCCCEECCcCceEeeccCCCC---
Confidence 000122334 44555554 89999999999999999887422
Q ss_pred CCCCCCccceeeecCcccchhHHHHHHHHHHhhCCCCCHHHHHHHHHhhcccccCCCCccccCCCCCCCCCCCCCCCccc
Q 040458 490 IPTDKRKTEFNILSGTSMACPHVSGLAALLKAAHPDWSPAAIRSALMTTAYTVDNRGETMIDESTGNTSTALDFGAGHVH 569 (732)
Q Consensus 490 ~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd 569 (732)
.|..++|||||||+|||++|||+|++|.|++++||++|++||++....+. ...++..+|+|+||
T Consensus 228 --------~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~--------~~~~~~~~G~G~l~ 291 (295)
T cd07474 228 --------GYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG--------VVYPVSRQGAGRVD 291 (295)
T ss_pred --------ceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC--------CcCChhccCcceec
Confidence 79999999999999999999999999999999999999999998764321 22355799999999
Q ss_pred cccc
Q 040458 570 PQKA 573 (732)
Q Consensus 570 ~~~A 573 (732)
+.+|
T Consensus 292 ~~~A 295 (295)
T cd07474 292 ALRA 295 (295)
T ss_pred cccC
Confidence 9887
No 11
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.8e-39 Score=335.58 Aligned_cols=206 Identities=34% Similarity=0.445 Sum_probs=164.7
Q ss_pred ccEEEEEecCCCCCCCCcccCCCCCCCCcccceeecCCCCCCccCCceeEeeeecccCccccCCCCCCCCCCCC-CCCCC
Q 040458 136 DLVIGVIDTGVWPERQSFNDRDLGPVPRKWKGQCVTTNDFPATSCNRKLIGARFFSQGYESTNGKMNETTEFRS-PRDSD 214 (732)
Q Consensus 136 GV~VgVIDTGId~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~-~~D~~ 214 (732)
||+|||||||||++||+|.... ..++.++.+.++|.+.. .. ..|..
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~--------------------~~~~~~i~~~~~~~~~~-------------~~~~~~~~ 47 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKH--------------------LFKNLRILGEYDFVDNS-------------NNTNYTDD 47 (261)
T ss_pred CCEEEEEccCCCccCcchhhhc--------------------cccCCceeeeecCccCC-------------CCCCCCCC
Confidence 7999999999999999995220 11345677777776521 11 36788
Q ss_pred CCcccchhhhhcc---------------------------------------cccCCCeEEEecCCCCCCCCc-------
Q 040458 215 GHGTHTASIAAGS---------------------------------------AVSDGVDVVSLSVGGVVVPYF------- 248 (732)
Q Consensus 215 gHGTHVAGi~ag~---------------------------------------Ai~dgvdVInlSlG~~~~~~~------- 248 (732)
||||||||||+|+ +.+.|++|||||||.......
T Consensus 48 ~HGT~vagiia~~~~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~~~~ 127 (261)
T cd07493 48 DHGTAVLSTMAGYTPGVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTYA 127 (261)
T ss_pred CchhhhheeeeeCCCCCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCcccccccc
Confidence 9999999999986 455699999999998532211
Q ss_pred -----ccHHHHHHHhhhcCCceEEEecCCCCCCC---CcccccCCCceeecCCCcCcccceeEEcCCCeEEeeeeeecCC
Q 040458 249 -----LDAIAIAAFGASDHGVFVSASAGNGGPGG---LTVTNVAPWVTTVGAGTIDRDFPADVHLGNGKIIPGVSVYSGP 320 (732)
Q Consensus 249 -----~~~~~~~~~~a~~~Gi~vV~aAGN~G~~~---~~~~~~~p~v~tVga~~~~~~~~~~~~~~~g~~~~~~s~~~~~ 320 (732)
...+..++..+.++|+++|+||||+|... ...+...+++++||+..
T Consensus 128 ~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~-------------------------- 181 (261)
T cd07493 128 DMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVD-------------------------- 181 (261)
T ss_pred cccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEec--------------------------
Confidence 23567788889999999999999999762 34556677777777621
Q ss_pred CCCCCceEEEEEcCCCCCCCCCccccCCCCCCCCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCCCcccccc
Q 040458 321 GLKKDQMYSLVYAGSESGDGYSASLCLEGSLDPAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFDGEGLVAD 400 (732)
Q Consensus 321 ~~~~~~~~~lv~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~ 400 (732)
T Consensus 182 -------------------------------------------------------------------------------- 181 (261)
T cd07493 182 -------------------------------------------------------------------------------- 181 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccEEEEccccHHHHHHHHHhcCCCCCCceEEEEeceeEeccCCCCccccccCCCCCCCCCCCCCCcEEeCCCcEEec
Q 040458 401 CHVLPATSVGAASGDEIRKYIMSAEKSKSPATATIVFKGTRVNVRPAPVVASFSARGPNPETPEILKPDVIAPGLNILAA 480 (732)
Q Consensus 401 ~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa 480 (732)
..+.++.||++||+.+ +++||||+|||.+|++.
T Consensus 182 ---------------------------------------------~~~~~~~~S~~G~~~~--~~~~pdi~a~G~~~~~~ 214 (261)
T cd07493 182 ---------------------------------------------ANGNKASFSSIGPTAD--GRLKPDVMALGTGIYVI 214 (261)
T ss_pred ---------------------------------------------cCCCCCccCCcCCCCC--CCcCCceEecCCCeEEE
Confidence 1124678999999986 89999999999999986
Q ss_pred CCCCCCCCCCCCCCCccceeeecCcccchhHHHHHHHHHHhhCCCCCHHHHHHHHHhhcc
Q 040458 481 WPDKVGPSGIPTDKRKTEFNILSGTSMACPHVSGLAALLKAAHPDWSPAAIRSALMTTAY 540 (732)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~ 540 (732)
...+ .|..++|||||||||||++|||+|++|+|++.|||++|++||+
T Consensus 215 ~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 215 NGDG-------------NITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred cCCC-------------cEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 5443 7999999999999999999999999999999999999999985
No 12
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=9.1e-39 Score=337.78 Aligned_cols=72 Identities=39% Similarity=0.612 Sum_probs=66.3
Q ss_pred ccccccCCCCCCCCCCCCCCcEEeCCCcEEecCCCCCCCCCCCCCCCccceeeecCcccchhHHHHHHHHHHhhCCCCCH
Q 040458 449 VVASFSARGPNPETPEILKPDVIAPGLNILAAWPDKVGPSGIPTDKRKTEFNILSGTSMACPHVSGLAALLKAAHPDWSP 528 (732)
Q Consensus 449 ~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~sp 528 (732)
.++.||++|+. +|||+|||.+|+++.+.+ .|..++|||||||||||++|||+|++|+|++
T Consensus 220 ~~~~~Sn~G~~-------~vdi~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~ 279 (291)
T cd07483 220 LVANFSNYGKK-------NVDVFAPGERIYSTTPDN-------------EYETDSGTSMAAPVVSGVAALIWSYYPNLTA 279 (291)
T ss_pred cccccCCCCCC-------ceEEEeCCCCeEeccCcC-------------CeEeeccHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 47889999975 359999999999998765 7999999999999999999999999999999
Q ss_pred HHHHHHHHhhcc
Q 040458 529 AAIRSALMTTAY 540 (732)
Q Consensus 529 ~~ik~~L~~TA~ 540 (732)
.|||++|++||.
T Consensus 280 ~~v~~~L~~ta~ 291 (291)
T cd07483 280 KEVKQIILESGV 291 (291)
T ss_pred HHHHHHHHHhCC
Confidence 999999999984
No 13
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.7e-39 Score=328.62 Aligned_cols=199 Identities=32% Similarity=0.448 Sum_probs=158.3
Q ss_pred cEEEEEecCCCCCCCCcccCCCCCCCCcccceeecCCCCCCccCCceeEeeeecccCccccCCCCCCCCCCCCCCCCCCC
Q 040458 137 LVIGVIDTGVWPERQSFNDRDLGPVPRKWKGQCVTTNDFPATSCNRKLIGARFFSQGYESTNGKMNETTEFRSPRDSDGH 216 (732)
Q Consensus 137 V~VgVIDTGId~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~D~~gH 216 (732)
|+|||||||||++||+|++.. +..+++.. ....|..+|
T Consensus 1 V~VavIDsGvd~~hp~l~~~~---------------------------~~~~~~~~---------------~~~~~~~~H 38 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVV---------------------------IARLFFAG---------------PGAPAPSAH 38 (239)
T ss_pred CEEEEEeCCCCCCCcccccCc---------------------------cccccCCC---------------CCCCCCCCC
Confidence 789999999999999996431 11111111 134578899
Q ss_pred cccchhhhhcc---------------------------------------cccCCCeEEEecCCCCCCCCcccHHHHHHH
Q 040458 217 GTHTASIAAGS---------------------------------------AVSDGVDVVSLSVGGVVVPYFLDAIAIAAF 257 (732)
Q Consensus 217 GTHVAGi~ag~---------------------------------------Ai~dgvdVInlSlG~~~~~~~~~~~~~~~~ 257 (732)
||||||||+|+ +++.|++|||||||+.. ...+..++.
T Consensus 39 GT~vAgiia~~~~~~~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~----~~~l~~ai~ 114 (239)
T cd05561 39 GTAVASLLAGAGAQRPGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP----NALLAAAVA 114 (239)
T ss_pred HHHHHHHHhCCCCCCcccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC----CHHHHHHHH
Confidence 99999999974 66679999999999632 356778888
Q ss_pred hhhcCCceEEEecCCCCCCC-CcccccCCCceeecCCCcCcccceeEEcCCCeEEeeeeeecCCCCCCCceEEEEEcCCC
Q 040458 258 GASDHGVFVSASAGNGGPGG-LTVTNVAPWVTTVGAGTIDRDFPADVHLGNGKIIPGVSVYSGPGLKKDQMYSLVYAGSE 336 (732)
Q Consensus 258 ~a~~~Gi~vV~aAGN~G~~~-~~~~~~~p~v~tVga~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~~~~lv~~~~~ 336 (732)
++.++|++||+||||+|+.. ..+++..+.+++|++..
T Consensus 115 ~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~------------------------------------------ 152 (239)
T cd05561 115 AAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVD------------------------------------------ 152 (239)
T ss_pred HHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeec------------------------------------------
Confidence 99999999999999998753 34455566777776521
Q ss_pred CCCCCCccccCCCCCCCCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCCCccccccCCcccEEEEccccHHH
Q 040458 337 SGDGYSASLCLEGSLDPAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFDGEGLVADCHVLPATSVGAASGDE 416 (732)
Q Consensus 337 ~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~v~~~~g~~ 416 (732)
T Consensus 153 -------------------------------------------------------------------------------- 152 (239)
T cd05561 153 -------------------------------------------------------------------------------- 152 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCCCCceEEEEeceeEeccCCCCccccccCCCCCCCCCCCCCCcEEeCCCcEEecCCCCCCCCCCCCCCCc
Q 040458 417 IRKYIMSAEKSKSPATATIVFKGTRVNVRPAPVVASFSARGPNPETPEILKPDVIAPGLNILAAWPDKVGPSGIPTDKRK 496 (732)
Q Consensus 417 l~~~~~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~ 496 (732)
..+.++.||++|+.. ||+|||.+|+++.+.+
T Consensus 153 -----------------------------~~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~~------------ 183 (239)
T cd05561 153 -----------------------------ARGRLYREANRGAHV--------DFAAPGVDVWVAAPGG------------ 183 (239)
T ss_pred -----------------------------CCCCccccCCCCCcc--------eEEccccceecccCCC------------
Confidence 113467899999875 9999999999987665
Q ss_pred cceeeecCcccchhHHHHHHHHHHhhCCCCCHHHHHHHHHhhcccccCCCCccccCCCCCCCCCCCCCCC
Q 040458 497 TEFNILSGTSMACPHVSGLAALLKAAHPDWSPAAIRSALMTTAYTVDNRGETMIDESTGNTSTALDFGAG 566 (732)
Q Consensus 497 ~~y~~~sGTSMAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G 566 (732)
.|..++|||||||||||++|||+|++| ++++|||++|++||+++. .+..+..||||
T Consensus 184 -~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g------------~~~~d~~~G~G 239 (239)
T cd05561 184 -GYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLG------------PPGRDPVFGYG 239 (239)
T ss_pred -CEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccC------------CCCcCCCcCCC
Confidence 799999999999999999999999999 999999999999999774 33455689998
No 14
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-39 Score=332.20 Aligned_cols=297 Identities=31% Similarity=0.482 Sum_probs=229.7
Q ss_pred CCCCCeEEEEeCCCCCCCCCcchHHHHHHhhccCC---------------------CcEEEEec---ceeeEEEEEcCHH
Q 040458 29 AETPKTFIIKVQYDAKPSIFPTHKHWYESSLSSAS---------------------ATLLHTYD---TVFHGFSAKLTPS 84 (732)
Q Consensus 29 ~~~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~v~~~y~---~~~ng~s~~~~~~ 84 (732)
+..+.+|||.|++......+..|.+|+++...... ..+.+.|. .+|+|+.-.++.+
T Consensus 77 ~~~~~~YiV~f~~~~~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft~~ 156 (501)
T KOG1153|consen 77 EALPSRYIVVFKPDASQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFTGE 156 (501)
T ss_pred cccccceEEEeCCCccHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhccccccccc
Confidence 34578999999977666677778888876654211 11344443 3888999999999
Q ss_pred HHHHHhCCCCeEEEEeceeeeccc-----CCCCcccCCcCCCCcc-------ccccccCCCCCccEEEEEecCCCCCCCC
Q 040458 85 EALRLKTLPHVLAVFSEQVRHLHT-----TRSPQFLGLKSSSDSA-------GLLLKESDFGSDLVIGVIDTGVWPERQS 152 (732)
Q Consensus 85 ~~~~L~~~p~V~~V~~~~~~~~~~-----~~s~~~~gl~~~~~~~-------~~~~~~~~~G~GV~VgVIDTGId~~Hp~ 152 (732)
-+..++++|-++.++++..++... .+....|||.++.... ..+...-..|+||..+|+||||+.+||+
T Consensus 157 ~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H~d 236 (501)
T KOG1153|consen 157 SVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEHPD 236 (501)
T ss_pred eeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEecccccccccc
Confidence 999999999999999999887754 4556679998875521 0111233479999999999999999999
Q ss_pred cccCCCCCCCCcccceeecCCCCCCccCCceeEeeeecccCccccCCCCCCCCCCCCCCCCCCCcccchhhhhcc-----
Q 040458 153 FNDRDLGPVPRKWKGQCVTTNDFPATSCNRKLIGARFFSQGYESTNGKMNETTEFRSPRDSDGHGTHTASIAAGS----- 227 (732)
Q Consensus 153 f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~----- 227 (732)
|.++ +.| |.|. +. .....|++||||||||+|+++
T Consensus 237 FegR------a~w-Ga~i-----~~-----------------------------~~~~~D~nGHGTH~AG~I~sKt~GvA 275 (501)
T KOG1153|consen 237 FEGR------AIW-GATI-----PP-----------------------------KDGDEDCNGHGTHVAGLIGSKTFGVA 275 (501)
T ss_pred cccc------eec-cccc-----CC-----------------------------CCcccccCCCcceeeeeeeccccccc
Confidence 9876 344 2221 10 122468999999999999999
Q ss_pred ----------------------------cccC---------CCeEEEecCCCCCCCCcccHHHHHHHhhhcCCceEEEec
Q 040458 228 ----------------------------AVSD---------GVDVVSLSVGGVVVPYFLDAIAIAAFGASDHGVFVSASA 270 (732)
Q Consensus 228 ----------------------------Ai~d---------gvdVInlSlG~~~~~~~~~~~~~~~~~a~~~Gi~vV~aA 270 (732)
.++. +--|.|||+|+.. +-.+..|+.+|.+.|+++++||
T Consensus 276 K~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~----S~aLn~AV~~A~~~Gi~fa~AA 351 (501)
T KOG1153|consen 276 KNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFR----SAALNMAVNAASERGIHFAVAA 351 (501)
T ss_pred cccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCcc----cHHHHHHHHHHhhcCeEEEEcC
Confidence 1111 3459999999843 4578889999999999999999
Q ss_pred CCCCCCCC-cccccCCCceeecCCCcCcccceeEEcCCCeEEeeeeeecCCCCCCCceEEEEEcCCCCCCCCCccccCCC
Q 040458 271 GNGGPGGL-TVTNVAPWVTTVGAGTIDRDFPADVHLGNGKIIPGVSVYSGPGLKKDQMYSLVYAGSESGDGYSASLCLEG 349 (732)
Q Consensus 271 GN~G~~~~-~~~~~~p~v~tVga~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~C~~~ 349 (732)
||+..+.+ +.++.+..+|||||++.
T Consensus 352 GNe~eDAC~~SPass~~aITVGAst~------------------------------------------------------ 377 (501)
T KOG1153|consen 352 GNEHEDACNSSPASSKKAITVGASTK------------------------------------------------------ 377 (501)
T ss_pred CCcchhhhccCcccccccEEeccccc------------------------------------------------------
Confidence 99987755 45577888999998531
Q ss_pred CCCCCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCCCccccccCCcccEEEEccccHHHHHHHHHhcCCCCC
Q 040458 350 SLDPAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFDGEGLVADCHVLPATSVGAASGDEIRKYIMSAEKSKS 429 (732)
Q Consensus 350 ~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~ 429 (732)
T Consensus 378 -------------------------------------------------------------------------------- 377 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------- 377 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEeceeEeccCCCCccccccCCCCCCCCCCCCCCcEEeCCCcEEecCCCCCCCCCCCCCCCccceeeecCcccch
Q 040458 430 PATATIVFKGTRVNVRPAPVVASFSARGPNPETPEILKPDVIAPGLNILAAWPDKVGPSGIPTDKRKTEFNILSGTSMAC 509 (732)
Q Consensus 430 ~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAa 509 (732)
.+.++.||+||+|+ ||.|||++|+|+|.+... .-.++||||||+
T Consensus 378 -----------------~D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~~-----------at~ilSGTSMas 421 (501)
T KOG1153|consen 378 -----------------NDTIAFFSNWGKCV--------DIFAPGVNILSSWIGSNN-----------ATAILSGTSMAS 421 (501)
T ss_pred -----------------ccchhhhcCcccee--------eeecCchhhhhhhhcCcc-----------chheeecccccC
Confidence 14689999999999 999999999999998743 678999999999
Q ss_pred hHHHHHHHHHHhhCCC---------CCHHHHHHHHHhhcc
Q 040458 510 PHVSGLAALLKAAHPD---------WSPAAIRSALMTTAY 540 (732)
Q Consensus 510 P~VAG~aALl~q~~p~---------~sp~~ik~~L~~TA~ 540 (732)
|||||++|.+++.+|. .+|.++|..+..-..
T Consensus 422 PhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 422 PHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred cchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 9999999999999883 388888887776554
No 15
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=5.5e-38 Score=328.03 Aligned_cols=78 Identities=47% Similarity=0.668 Sum_probs=73.1
Q ss_pred CccccccCCCCCCCCCCCCCCcEEeCCCcEEecCCCCCCCCCCCCCCCccceeeecCcccchhHHHHHHHHHHhhCCC--
Q 040458 448 PVVASFSARGPNPETPEILKPDVIAPGLNILAAWPDKVGPSGIPTDKRKTEFNILSGTSMACPHVSGLAALLKAAHPD-- 525 (732)
Q Consensus 448 ~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~-- 525 (732)
+.++.||++||... +++||||+|||.+|+++++.+ .|..++|||||||+|||++|||+|++|+
T Consensus 185 ~~~~~~S~~g~~~~--~~~~~dv~ApG~~i~s~~~~~-------------~~~~~~GTS~AaP~vaG~aAll~~~~p~~~ 249 (264)
T cd07481 185 DVLADFSSRGPSTY--GRIKPDISAPGVNIRSAVPGG-------------GYGSSSGTSMAAPHVAGVAALLWSANPSLI 249 (264)
T ss_pred CCCccccCCCCCCC--CCcCceEEECCCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHhCCCCC
Confidence 35688999999986 899999999999999999875 7999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhcc
Q 040458 526 WSPAAIRSALMTTAY 540 (732)
Q Consensus 526 ~sp~~ik~~L~~TA~ 540 (732)
++++|||++|++||+
T Consensus 250 l~~~~v~~~L~~tA~ 264 (264)
T cd07481 250 GDVDATEAILTETAR 264 (264)
T ss_pred CCHHHHHHHHHHhcC
Confidence 999999999999985
No 16
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=1.4e-37 Score=335.45 Aligned_cols=82 Identities=29% Similarity=0.392 Sum_probs=71.2
Q ss_pred CccccccCCCCCCCCCCCCCCcEEeCCCcEEecCCCCCCCCCCCCCCCccceeeecCcccchhHHHHHHHHHHh----hC
Q 040458 448 PVVASFSARGPNPETPEILKPDVIAPGLNILAAWPDKVGPSGIPTDKRKTEFNILSGTSMACPHVSGLAALLKA----AH 523 (732)
Q Consensus 448 ~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~~ 523 (732)
+.++.||||||+.+ +.+||||+|||+.|.++-.... ..|..|+|||||||||||++|||++ .+
T Consensus 327 ~~~~~fSSrGP~~d--G~~~pdI~APG~~I~s~p~~~~-----------~~~~~~sGTSmAaP~VAG~aALllSa~k~~~ 393 (412)
T cd04857 327 GNQYTWSSRGPTAD--GALGVSISAPGGAIASVPNWTL-----------QGSQLMNGTSMSSPNACGGIALLLSGLKAEG 393 (412)
T ss_pred CccccccccCCccc--CCcCceEEeCCCcEEEcccCCC-----------CCeEEecccHHHHHHHHHHHHHHHhhhhhcC
Confidence 45789999999997 9999999999999988522211 1689999999999999999999985 47
Q ss_pred CCCCHHHHHHHHHhhcccc
Q 040458 524 PDWSPAAIRSALMTTAYTV 542 (732)
Q Consensus 524 p~~sp~~ik~~L~~TA~~~ 542 (732)
|+|+|.+||++|++||+++
T Consensus 394 ~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 394 IPYTPYSVRRALENTAKKL 412 (412)
T ss_pred CCCCHHHHHHHHHHhCccC
Confidence 8999999999999999864
No 17
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=3.3e-37 Score=323.76 Aligned_cols=219 Identities=30% Similarity=0.361 Sum_probs=164.9
Q ss_pred cccccCCCCCccEEEEEecCCCCCCCCcccCCCCCCCCcccceeecCCCCCCccCCceeEeeeecccCccccCCCCCCCC
Q 040458 126 LLLKESDFGSDLVIGVIDTGVWPERQSFNDRDLGPVPRKWKGQCVTTNDFPATSCNRKLIGARFFSQGYESTNGKMNETT 205 (732)
Q Consensus 126 ~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~ 205 (732)
++|..+.+|+||+|||||||||++||+|.+.... ..+ ..+...+...... ..
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~-------------~~~------------~~~~~~~~~~~~~---~~ 52 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDG-------------DGY------------DPAVNGYNFVPNV---GD 52 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCC-------------CCc------------ccccCCccccccc---CC
Confidence 3799999999999999999999999999865110 000 0000111100000 01
Q ss_pred CCCCCCCCCCCcccchhhhhcc---------------------------------------------cccCCCeEEEecC
Q 040458 206 EFRSPRDSDGHGTHTASIAAGS---------------------------------------------AVSDGVDVVSLSV 240 (732)
Q Consensus 206 ~~~~~~D~~gHGTHVAGi~ag~---------------------------------------------Ai~dgvdVInlSl 240 (732)
......|..||||||||||+|+ +++.|++||||||
T Consensus 53 ~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~ 132 (273)
T cd07485 53 IDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIAGAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSW 132 (273)
T ss_pred cCCCCCCCCCCHHHHHHHHHcccCCCcceeccccccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecC
Confidence 1233467889999999999872 6777999999999
Q ss_pred CCCCCCCcccHHHHHHHhhhcC-------CceEEEecCCCCCCCCcccccCCCceeecCCCcCcccceeEEcCCCeEEee
Q 040458 241 GGVVVPYFLDAIAIAAFGASDH-------GVFVSASAGNGGPGGLTVTNVAPWVTTVGAGTIDRDFPADVHLGNGKIIPG 313 (732)
Q Consensus 241 G~~~~~~~~~~~~~~~~~a~~~-------Gi~vV~aAGN~G~~~~~~~~~~p~v~tVga~~~~~~~~~~~~~~~g~~~~~ 313 (732)
|......+...+..++..+.++ |++||+||||+|......++..+++++|++..
T Consensus 133 g~~~~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~------------------- 193 (273)
T cd07485 133 GGTGGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALD------------------- 193 (273)
T ss_pred CCCCccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEecc-------------------
Confidence 9864333456677778888877 99999999999987666667777888887631
Q ss_pred eeeecCCCCCCCceEEEEEcCCCCCCCCCccccCCCCCCCCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCC
Q 040458 314 VSVYSGPGLKKDQMYSLVYAGSESGDGYSASLCLEGSLDPAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFD 393 (732)
Q Consensus 314 ~s~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 393 (732)
T Consensus 194 -------------------------------------------------------------------------------- 193 (273)
T cd07485 194 -------------------------------------------------------------------------------- 193 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccCCcccEEEEccccHHHHHHHHHhcCCCCCCceEEEEeceeEeccCCCCccccccCCCCCCCCCCCCCCcEEeC
Q 040458 394 GEGLVADCHVLPATSVGAASGDEIRKYIMSAEKSKSPATATIVFKGTRVNVRPAPVVASFSARGPNPETPEILKPDVIAP 473 (732)
Q Consensus 394 ~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~AP 473 (732)
..+.++.||++|+.. ||+||
T Consensus 194 ----------------------------------------------------~~~~~~~~S~~g~~~--------~i~ap 213 (273)
T cd07485 194 ----------------------------------------------------TNDNKASFSNYGRWV--------DIAAP 213 (273)
T ss_pred ----------------------------------------------------CCCCcCccccCCCce--------EEEeC
Confidence 112457899999876 99999
Q ss_pred CC-cEEecCCCCCCCCCCCCCCCccceeeecCcccchhHHHHHHHHHHhhCCC-CCHHHHHHHHHhh
Q 040458 474 GL-NILAAWPDKVGPSGIPTDKRKTEFNILSGTSMACPHVSGLAALLKAAHPD-WSPAAIRSALMTT 538 (732)
Q Consensus 474 G~-~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~-~sp~~ik~~L~~T 538 (732)
|. .|+++++.... .....|..++|||||||+|||++|||+|++|. ++|+|||++|++|
T Consensus 214 G~~~i~~~~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 214 GVGTILSTVPKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred CCCccccccccccC-------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 99 99998875421 11127899999999999999999999999999 9999999999986
No 18
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=9.2e-37 Score=317.37 Aligned_cols=200 Identities=38% Similarity=0.518 Sum_probs=161.7
Q ss_pred ccccCCCCCccEEEEEecCCCCCCCCcccCCCCCCCCcccceeecCCCCCCccCCceeEeeeecccCccccCCCCCCCCC
Q 040458 127 LLKESDFGSDLVIGVIDTGVWPERQSFNDRDLGPVPRKWKGQCVTTNDFPATSCNRKLIGARFFSQGYESTNGKMNETTE 206 (732)
Q Consensus 127 ~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~ 206 (732)
+|..+++|+||+|||||+||+++||+|.+. +...++|...
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~---------------------------~~~~~~~~~~------------- 56 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR---------------------------AIWGADFVGG------------- 56 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC---------------------------eeeeeecCCC-------------
Confidence 667789999999999999999999999643 2222233221
Q ss_pred CCCCCCCCCCcccchhhhhcc---------------------------------cccC-----CCeEEEecCCCCCCCCc
Q 040458 207 FRSPRDSDGHGTHTASIAAGS---------------------------------AVSD-----GVDVVSLSVGGVVVPYF 248 (732)
Q Consensus 207 ~~~~~D~~gHGTHVAGi~ag~---------------------------------Ai~d-----gvdVInlSlG~~~~~~~ 248 (732)
....|..+|||||||||+++ ++.. +++|||+|||...
T Consensus 57 -~~~~d~~~HGT~vAgiia~~~~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~---- 131 (255)
T cd04077 57 -DPDSDCNGHGTHVAGTVGGKTYGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGA---- 131 (255)
T ss_pred -CCCCCCCccHHHHHHHHHccccCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCC----
Confidence 12567889999999999986 3333 5899999999853
Q ss_pred ccHHHHHHHhhhcCCceEEEecCCCCCCC-CcccccCCCceeecCCCcCcccceeEEcCCCeEEeeeeeecCCCCCCCce
Q 040458 249 LDAIAIAAFGASDHGVFVSASAGNGGPGG-LTVTNVAPWVTTVGAGTIDRDFPADVHLGNGKIIPGVSVYSGPGLKKDQM 327 (732)
Q Consensus 249 ~~~~~~~~~~a~~~Gi~vV~aAGN~G~~~-~~~~~~~p~v~tVga~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~~ 327 (732)
...+..++.++.++|+++|+||||+|... ...++..|++++||+...
T Consensus 132 ~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~-------------------------------- 179 (255)
T cd04077 132 STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDS-------------------------------- 179 (255)
T ss_pred CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCC--------------------------------
Confidence 45677788889999999999999999765 344566778888877311
Q ss_pred EEEEEcCCCCCCCCCccccCCCCCCCCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCCCccccccCCcccEE
Q 040458 328 YSLVYAGSESGDGYSASLCLEGSLDPAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFDGEGLVADCHVLPAT 407 (732)
Q Consensus 328 ~~lv~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~ 407 (732)
T Consensus 180 -------------------------------------------------------------------------------- 179 (255)
T cd04077 180 -------------------------------------------------------------------------------- 179 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEccccHHHHHHHHHhcCCCCCCceEEEEeceeEeccCCCCccccccCCCCCCCCCCCCCCcEEeCCCcEEecCCCCCCC
Q 040458 408 SVGAASGDEIRKYIMSAEKSKSPATATIVFKGTRVNVRPAPVVASFSARGPNPETPEILKPDVIAPGLNILAAWPDKVGP 487 (732)
Q Consensus 408 ~v~~~~g~~l~~~~~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~ 487 (732)
.+.++.||++||.. ||+|||.+|+++......
T Consensus 180 ---------------------------------------~~~~~~~S~~g~~~--------~i~apG~~i~~~~~~~~~- 211 (255)
T cd04077 180 ---------------------------------------DDARASFSNYGSCV--------DIFAPGVDILSAWIGSDT- 211 (255)
T ss_pred ---------------------------------------CCCccCcccCCCCC--------cEEeCCCCeEecccCCCC-
Confidence 12357899999986 999999999998875322
Q ss_pred CCCCCCCCccceeeecCcccchhHHHHHHHHHHhhCCCCCHHHHHHHHHhhccc
Q 040458 488 SGIPTDKRKTEFNILSGTSMACPHVSGLAALLKAAHPDWSPAAIRSALMTTAYT 541 (732)
Q Consensus 488 ~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~ 541 (732)
.|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 212 ----------~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 212 ----------ATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred ----------cEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 79999999999999999999999999999999999999999974
No 19
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2e-36 Score=319.86 Aligned_cols=129 Identities=26% Similarity=0.326 Sum_probs=96.9
Q ss_pred cccccccCCCCCccEEEEEecCCCCCCCCcccCCCCCCCCcccceeecCCCCCCccCCceeEeeeecccCccccCCCCCC
Q 040458 124 AGLLLKESDFGSDLVIGVIDTGVWPERQSFNDRDLGPVPRKWKGQCVTTNDFPATSCNRKLIGARFFSQGYESTNGKMNE 203 (732)
Q Consensus 124 ~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~ 203 (732)
+.++|+++.+|+||+|||||||||..|| |...+. .+ ++ .+..+
T Consensus 10 ~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~-------~~---------------~~----~~~~~---------- 52 (298)
T cd07494 10 ATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGY-------QV---------------RV----VLAPG---------- 52 (298)
T ss_pred hhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCc-------cc---------------ee----ecCCC----------
Confidence 3558999999999999999999999998 754311 00 00 00000
Q ss_pred CCCCCCCCCCCCCcccchhhhhcc-------------------------cccCCCeEEEecCCCCCCCC----------c
Q 040458 204 TTEFRSPRDSDGHGTHTASIAAGS-------------------------AVSDGVDVVSLSVGGVVVPY----------F 248 (732)
Q Consensus 204 ~~~~~~~~D~~gHGTHVAGi~ag~-------------------------Ai~dgvdVInlSlG~~~~~~----------~ 248 (732)
......|++||||||||++.|- +++.|+||||||||...... .
T Consensus 53 --~~~~~~D~~gHGT~vag~i~GvAP~a~i~~vkv~~~~~~~~~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~ 130 (298)
T cd07494 53 --ATDPACDENGHGTGESANLFAIAPGAQFIGVKLGGPDLVNSVGAFKKAISLSPDIISNSWGYDLRSPGTSWSRSLPNA 130 (298)
T ss_pred --CCCCCCCCCCcchheeeceeEeCCCCeEEEEEccCCCcHHHHHHHHHHHhcCCCEEEeecccCCCCcccccccccchh
Confidence 0123567889999999998887 77889999999999852211 1
Q ss_pred ccHHHHHHHhhhcCCceEEEecCCCCCCCCcccccCCCceeecCCC
Q 040458 249 LDAIAIAAFGASDHGVFVSASAGNGGPGGLTVTNVAPWVTTVGAGT 294 (732)
Q Consensus 249 ~~~~~~~~~~a~~~Gi~vV~aAGN~G~~~~~~~~~~p~v~tVga~~ 294 (732)
...+..++.+|.++|++||+||||++. .+++..|++++||+..
T Consensus 131 ~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~ 173 (298)
T cd07494 131 LKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVF 173 (298)
T ss_pred hHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEe
Confidence 235777888889999999999999974 4688899999999853
No 20
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.2e-36 Score=314.14 Aligned_cols=217 Identities=37% Similarity=0.514 Sum_probs=166.7
Q ss_pred CCccEEEEEecCCCCCCCCcccCCCCCCCCcccceeecCCCCCCccCCceeEeeeecccCccccCCCCCCCCCCCCCCCC
Q 040458 134 GSDLVIGVIDTGVWPERQSFNDRDLGPVPRKWKGQCVTTNDFPATSCNRKLIGARFFSQGYESTNGKMNETTEFRSPRDS 213 (732)
Q Consensus 134 G~GV~VgVIDTGId~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~D~ 213 (732)
|+||+|+|||+|||++||+|.+.... .+.+.... .......|.
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~---------------------------~~~~~~~~----------~~~~~~~d~ 43 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR---------------------------FADFVNTV----------NGRTTPYDD 43 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc---------------------------cccccccc----------cCCCCCCCC
Confidence 89999999999999999999764210 00010000 112345678
Q ss_pred CCCcccchhhhhcc----------------------------------------cccC----CCeEEEecCCCCCC-CCc
Q 040458 214 DGHGTHTASIAAGS----------------------------------------AVSD----GVDVVSLSVGGVVV-PYF 248 (732)
Q Consensus 214 ~gHGTHVAGi~ag~----------------------------------------Ai~d----gvdVInlSlG~~~~-~~~ 248 (732)
.+|||||||||+|+ +++. +++|||||||.... ...
T Consensus 44 ~~HGT~vAgiiag~~~~~~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~~~~ 123 (264)
T cd07487 44 NGHGTHVAGIIAGSGRASNGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYG 123 (264)
T ss_pred CCchHHHHHHHhcCCcccCCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCCCCC
Confidence 89999999999874 4444 99999999998643 445
Q ss_pred ccHHHHHHHhhhcCCceEEEecCCCCCCCC--cccccCCCceeecCCCcCcccceeEEcCCCeEEeeeeeecCCCCCCCc
Q 040458 249 LDAIAIAAFGASDHGVFVSASAGNGGPGGL--TVTNVAPWVTTVGAGTIDRDFPADVHLGNGKIIPGVSVYSGPGLKKDQ 326 (732)
Q Consensus 249 ~~~~~~~~~~a~~~Gi~vV~aAGN~G~~~~--~~~~~~p~v~tVga~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~ 326 (732)
.+.+..++.++.++|++||+||||+|.... ..+...+.+++||+...+..
T Consensus 124 ~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~---------------------------- 175 (264)
T cd07487 124 EDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP---------------------------- 175 (264)
T ss_pred CCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC----------------------------
Confidence 678888999999999999999999997765 44566788888887421100
Q ss_pred eEEEEEcCCCCCCCCCccccCCCCCCCCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCCCccccccCCcccE
Q 040458 327 MYSLVYAGSESGDGYSASLCLEGSLDPAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFDGEGLVADCHVLPA 406 (732)
Q Consensus 327 ~~~lv~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~ 406 (732)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEccccHHHHHHHHHhcCCCCCCceEEEEeceeEeccCCCCccccccCCCCCCCCCCCCCCcEEeCCCcEEecCCCCCC
Q 040458 407 TSVGAASGDEIRKYIMSAEKSKSPATATIVFKGTRVNVRPAPVVASFSARGPNPETPEILKPDVIAPGLNILAAWPDKVG 486 (732)
Q Consensus 407 ~~v~~~~g~~l~~~~~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~ 486 (732)
....++.||++||+.+ +++||||+|||.+|+++.+....
T Consensus 176 ---------------------------------------~~~~~~~~s~~G~~~~--~~~~~di~apG~~i~~~~~~~~~ 214 (264)
T cd07487 176 ---------------------------------------HDDGISYFSSRGPTGD--GRIKPDVVAPGENIVSCRSPGGN 214 (264)
T ss_pred ---------------------------------------CCccccccccCCCCCC--CCcCCCEEccccceEeccccccc
Confidence 0024688999999987 89999999999999998664311
Q ss_pred CCCCCCCCCccceeeecCcccchhHHHHHHHHHHhhCCCCCHHHHHHHHHhhcc
Q 040458 487 PSGIPTDKRKTEFNILSGTSMACPHVSGLAALLKAAHPDWSPAAIRSALMTTAY 540 (732)
Q Consensus 487 ~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~ 540 (732)
. .......|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 215 ~----~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 215 P----GAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred c----CCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 0 1112237899999999999999999999999999999999999999985
No 21
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=3.8e-36 Score=313.67 Aligned_cols=212 Identities=36% Similarity=0.444 Sum_probs=171.9
Q ss_pred cccCCcCCCCccccccccCCCCCccEEEEEecCCCCCCCCcccCCCCCCCCcccceeecCCCCCCccCCceeEeeeeccc
Q 040458 113 QFLGLKSSSDSAGLLLKESDFGSDLVIGVIDTGVWPERQSFNDRDLGPVPRKWKGQCVTTNDFPATSCNRKLIGARFFSQ 192 (732)
Q Consensus 113 ~~~gl~~~~~~~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~ 192 (732)
..|.+..+. +..+|..+ +|+||+|||||+||+++||+|... ++...+++..
T Consensus 9 ~~w~~~~~~--~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~--------------------------~~~~~~~~~~ 59 (260)
T cd07484 9 YQWNLDQIG--APKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV--------------------------KFVLGYDFVD 59 (260)
T ss_pred cCCCccccC--hHHHHhhc-CCCCCEEEEEeCCCCCCCcccccC--------------------------CcccceeccC
Confidence 346665553 36689888 999999999999999999998422 2223333322
Q ss_pred CccccCCCCCCCCCCCCCCCCCCCcccchhhhhcc---------------------------------------cccCCC
Q 040458 193 GYESTNGKMNETTEFRSPRDSDGHGTHTASIAAGS---------------------------------------AVSDGV 233 (732)
Q Consensus 193 g~~~~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~---------------------------------------Ai~dgv 233 (732)
+ ...+.|..||||||||||++. +++.|+
T Consensus 60 ~-------------~~~~~d~~~HGT~vagii~~~~~~~~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~ 126 (260)
T cd07484 60 N-------------DSDAMDDNGHGTHVAGIIAAATNNGTGVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGA 126 (260)
T ss_pred C-------------CCCCCCCCCcHHHHHHHHhCccCCCCceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCC
Confidence 1 123567889999999999874 567799
Q ss_pred eEEEecCCCCCCCCcccHHHHHHHhhhcCCceEEEecCCCCCCCCcccccCCCceeecCCCcCcccceeEEcCCCeEEee
Q 040458 234 DVVSLSVGGVVVPYFLDAIAIAAFGASDHGVFVSASAGNGGPGGLTVTNVAPWVTTVGAGTIDRDFPADVHLGNGKIIPG 313 (732)
Q Consensus 234 dVInlSlG~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~G~~~~~~~~~~p~v~tVga~~~~~~~~~~~~~~~g~~~~~ 313 (732)
+|||||||... ....+..++..+.++|++||+||||+|.....+++..+++++||+.+.
T Consensus 127 ~iin~S~g~~~---~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~------------------ 185 (260)
T cd07484 127 KVINLSLGGGL---GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQ------------------ 185 (260)
T ss_pred eEEEecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCC------------------
Confidence 99999999853 345677788888999999999999999887777888888888887321
Q ss_pred eeeecCCCCCCCceEEEEEcCCCCCCCCCccccCCCCCCCCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCC
Q 040458 314 VSVYSGPGLKKDQMYSLVYAGSESGDGYSASLCLEGSLDPAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFD 393 (732)
Q Consensus 314 ~s~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 393 (732)
T Consensus 186 -------------------------------------------------------------------------------- 185 (260)
T cd07484 186 -------------------------------------------------------------------------------- 185 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccCCcccEEEEccccHHHHHHHHHhcCCCCCCceEEEEeceeEeccCCCCccccccCCCCCCCCCCCCCCcEEeC
Q 040458 394 GEGLVADCHVLPATSVGAASGDEIRKYIMSAEKSKSPATATIVFKGTRVNVRPAPVVASFSARGPNPETPEILKPDVIAP 473 (732)
Q Consensus 394 ~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~AP 473 (732)
.+.++.||++|+.. |++||
T Consensus 186 -----------------------------------------------------~~~~~~~s~~g~~~--------~~~ap 204 (260)
T cd07484 186 -----------------------------------------------------DDKRASFSNYGKWV--------DVSAP 204 (260)
T ss_pred -----------------------------------------------------CCCcCCcCCCCCCc--------eEEeC
Confidence 12456789999875 99999
Q ss_pred CCcEEecCCCCCCCCCCCCCCCccceeeecCcccchhHHHHHHHHHHhhCCCCCHHHHHHHHHhhcccc
Q 040458 474 GLNILAAWPDKVGPSGIPTDKRKTEFNILSGTSMACPHVSGLAALLKAAHPDWSPAAIRSALMTTAYTV 542 (732)
Q Consensus 474 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~ 542 (732)
|.+|+++.+.. .|..++|||||||+|||++||++|++| |++.+||++|++||+++
T Consensus 205 G~~i~~~~~~~-------------~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 205 GGGILSTTPDG-------------DYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred CCCcEeecCCC-------------CEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 99999988764 799999999999999999999999999 99999999999999875
No 22
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=1.6e-35 Score=314.49 Aligned_cols=236 Identities=33% Similarity=0.410 Sum_probs=166.6
Q ss_pred cCCCCCccEEEEEecCCCCCCCCcccCCCCCCCCcccceeecCCCCCCccCCceeEeeeecccCccccCCCCCCCCCCCC
Q 040458 130 ESDFGSDLVIGVIDTGVWPERQSFNDRDLGPVPRKWKGQCVTTNDFPATSCNRKLIGARFFSQGYESTNGKMNETTEFRS 209 (732)
Q Consensus 130 ~~~~G~GV~VgVIDTGId~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~ 209 (732)
++++|+||+|||||||||++||+|.+... .+.. ..++++.....+.. .
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~----~~~~~~~~~~~~~~----------------~ 49 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTN----LFHRKIVRYDSLSD----------------T 49 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCc----cCcccEEEeeccCC----------------C
Confidence 57899999999999999999999976421 0011 12344443333222 1
Q ss_pred CCCCCCCcccchhhhhcc-------------------------------------------cccCCCeEEEecCCCCCCC
Q 040458 210 PRDSDGHGTHTASIAAGS-------------------------------------------AVSDGVDVVSLSVGGVVVP 246 (732)
Q Consensus 210 ~~D~~gHGTHVAGi~ag~-------------------------------------------Ai~dgvdVInlSlG~~~~~ 246 (732)
..|..+|||||||||+|+ +.+.|++|||||||.....
T Consensus 50 ~~d~~~HGT~vAgiia~~~~~~~~~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~~ 129 (293)
T cd04842 50 KDDVDGHGTHVAGIIAGKGNDSSSISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNN 129 (293)
T ss_pred CCCCCCCcchhheeeccCCcCCCcccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCCCcc
Confidence 227899999999999872 4556899999999986432
Q ss_pred CcccHHHHHHHhhh-c-CCceEEEecCCCCCCCC---cccccCCCceeecCCCcCcccceeEEcCCCeEEeeeeeecCCC
Q 040458 247 YFLDAIAIAAFGAS-D-HGVFVSASAGNGGPGGL---TVTNVAPWVTTVGAGTIDRDFPADVHLGNGKIIPGVSVYSGPG 321 (732)
Q Consensus 247 ~~~~~~~~~~~~a~-~-~Gi~vV~aAGN~G~~~~---~~~~~~p~v~tVga~~~~~~~~~~~~~~~g~~~~~~s~~~~~~ 321 (732)
.......++.++. + +|++||+||||+|.... ..+...+++++||+........
T Consensus 130 -~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~--------------------- 187 (293)
T cd04842 130 -GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSN--------------------- 187 (293)
T ss_pred -ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccc---------------------
Confidence 1233344444433 3 89999999999997764 5667889999999854322100
Q ss_pred CCCCceEEEEEcCCCCCCCCCccccCCCCCCCCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCCCccccccC
Q 040458 322 LKKDQMYSLVYAGSESGDGYSASLCLEGSLDPAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFDGEGLVADC 401 (732)
Q Consensus 322 ~~~~~~~~lv~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~ 401 (732)
...|..
T Consensus 188 ---------------------~~~~~~----------------------------------------------------- 193 (293)
T cd04842 188 ---------------------GEGGLG----------------------------------------------------- 193 (293)
T ss_pred ---------------------cccccc-----------------------------------------------------
Confidence 000000
Q ss_pred CcccEEEEccccHHHHHHHHHhcCCCCCCceEEEEeceeEeccCCCCccccccCCCCCCCCCCCCCCcEEeCCCcEEecC
Q 040458 402 HVLPATSVGAASGDEIRKYIMSAEKSKSPATATIVFKGTRVNVRPAPVVASFSARGPNPETPEILKPDVIAPGLNILAAW 481 (732)
Q Consensus 402 ~~~p~~~v~~~~g~~l~~~~~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~ 481 (732)
.......++.||++||+.+ +++||||+|||++|+++.
T Consensus 194 -----------------------------------------~~~~~~~~~~~S~~G~~~~--~~~~pdv~ApG~~i~~~~ 230 (293)
T cd04842 194 -----------------------------------------QSDNSDTVASFSSRGPTYD--GRIKPDLVAPGTGILSAR 230 (293)
T ss_pred -----------------------------------------ccCCCCccccccCcCCCCC--CCcCCCEECCCCCeEecc
Confidence 0011246789999999986 899999999999999997
Q ss_pred CCCCCCCCCCCCCCccceeeecCcccchhHHHHHHHHHHhhC-----C---CCCHHHHHHHHHhhcc
Q 040458 482 PDKVGPSGIPTDKRKTEFNILSGTSMACPHVSGLAALLKAAH-----P---DWSPAAIRSALMTTAY 540 (732)
Q Consensus 482 ~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~-----p---~~sp~~ik~~L~~TA~ 540 (732)
+.... ........|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 231 ~~~~~----~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 231 SGGGG----IGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCCCC----CCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 55300 001112378999999999999999999999985 4 6777899999999985
No 23
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.8e-35 Score=307.63 Aligned_cols=216 Identities=36% Similarity=0.495 Sum_probs=154.1
Q ss_pred ccEEEEEecCCCCCCCCcccCCCCCCCCcccceeecCCCCCCccCCceeEeeeecccCccccCCCCCCCCCCCCCCCCCC
Q 040458 136 DLVIGVIDTGVWPERQSFNDRDLGPVPRKWKGQCVTTNDFPATSCNRKLIGARFFSQGYESTNGKMNETTEFRSPRDSDG 215 (732)
Q Consensus 136 GV~VgVIDTGId~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~D~~g 215 (732)
||+|||||||||++||+|.+. +...++|... .........|..+
T Consensus 1 GV~VaviDsGv~~~hp~l~~~---------------------------~~~~~~~~~~---------~~~~~~~~~d~~~ 44 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR---------------------------VAQWADFDEN---------RRISATEVFDAGG 44 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc---------------------------cCCceeccCC---------CCCCCCCCCCCCC
Confidence 799999999999999999753 1111122111 0011234567889
Q ss_pred Ccccchhhhhcc-------------------------------------cccCCCeEEEecCCCCCCCCcccHHHHHHHh
Q 040458 216 HGTHTASIAAGS-------------------------------------AVSDGVDVVSLSVGGVVVPYFLDAIAIAAFG 258 (732)
Q Consensus 216 HGTHVAGi~ag~-------------------------------------Ai~dgvdVInlSlG~~~~~~~~~~~~~~~~~ 258 (732)
|||||||||+|+ +++.+++|||||||..... .+++..++..
T Consensus 45 HGT~vAgiia~~~~~~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~--~~~~~~~~~~ 122 (254)
T cd07490 45 HGTHVSGTIGGGGAKGVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS--EDPLEEAVEA 122 (254)
T ss_pred cHHHHHHHHhcCCCCCCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC--CcHHHHHHHH
Confidence 999999999986 5667999999999985432 4566666555
Q ss_pred hhc-CCceEEEecCCCCCCCCcccccCCCceeecCCCcCcccceeEEcCCCeEEeeeeeecCCCCCCCceEEEEEcCCCC
Q 040458 259 ASD-HGVFVSASAGNGGPGGLTVTNVAPWVTTVGAGTIDRDFPADVHLGNGKIIPGVSVYSGPGLKKDQMYSLVYAGSES 337 (732)
Q Consensus 259 a~~-~Gi~vV~aAGN~G~~~~~~~~~~p~v~tVga~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~~~~lv~~~~~~ 337 (732)
+.+ +|++||+||||+|......+...+++++||+...+.... .+
T Consensus 123 ~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~------------------------------~~----- 167 (254)
T cd07490 123 LSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDA------------------------------WF----- 167 (254)
T ss_pred HHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCcc------------------------------Cc-----
Confidence 554 699999999999988777778889999999854221100 00
Q ss_pred CCCCCccccCCCCCCCCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCCCccccccCCcccEEEEccccHHHH
Q 040458 338 GDGYSASLCLEGSLDPAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFDGEGLVADCHVLPATSVGAASGDEI 417 (732)
Q Consensus 338 ~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~v~~~~g~~l 417 (732)
. .
T Consensus 168 --------------s-----------~----------------------------------------------------- 169 (254)
T cd07490 168 --------------S-----------S----------------------------------------------------- 169 (254)
T ss_pred --------------c-----------C-----------------------------------------------------
Confidence 0 0
Q ss_pred HHHHHhcCCCCCCceEEEEeceeEeccCCCCccccccCCCCCCCCCCCCCCcEEeCCCcEEecCCCCCCCCCCCCCCCcc
Q 040458 418 RKYIMSAEKSKSPATATIVFKGTRVNVRPAPVVASFSARGPNPETPEILKPDVIAPGLNILAAWPDKVGPSGIPTDKRKT 497 (732)
Q Consensus 418 ~~~~~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~ 497 (732)
........++.+|... ....||||+|||.+|+++..... ...
T Consensus 170 ----------------------------~g~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~~~~~~~---------~~~ 211 (254)
T cd07490 170 ----------------------------FGSSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSARQGAN---------GDG 211 (254)
T ss_pred ----------------------------CcccccccccCCCCCc-cCCcCceEEeccCCeEccccCCC---------CCC
Confidence 0000112223333332 26789999999999999653211 112
Q ss_pred ceeeecCcccchhHHHHHHHHHHhhCCCCCHHHHHHHHHhhcc
Q 040458 498 EFNILSGTSMACPHVSGLAALLKAAHPDWSPAAIRSALMTTAY 540 (732)
Q Consensus 498 ~y~~~sGTSMAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~ 540 (732)
.|..++|||||||+|||++|||+|++|+|++.+||++|++||+
T Consensus 212 ~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 212 QYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred CeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 7999999999999999999999999999999999999999984
No 24
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.6e-36 Score=315.98 Aligned_cols=88 Identities=31% Similarity=0.392 Sum_probs=70.5
Q ss_pred ccccCCCCCCCCCCCCCCcEEeCCCcEEecCCCCCCCCC-----CCCCCCccceeeecCcccchhHHHHHHHHHHhhCCC
Q 040458 451 ASFSARGPNPETPEILKPDVIAPGLNILAAWPDKVGPSG-----IPTDKRKTEFNILSGTSMACPHVSGLAALLKAAHPD 525 (732)
Q Consensus 451 a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~-----~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~ 525 (732)
+.||+|||... +.+||||+|||++|.++.+....... .........|..++|||||||||||++|||+|++|+
T Consensus 199 ~~fs~~Gp~~~--~~~KPDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~ 276 (291)
T cd04847 199 GATTSSGPGSP--GPIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPE 276 (291)
T ss_pred CCccccCCCCC--CCcCCcEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCC
Confidence 34999999987 99999999999999986543210000 000112237999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhcc
Q 040458 526 WSPAAIRSALMTTAY 540 (732)
Q Consensus 526 ~sp~~ik~~L~~TA~ 540 (732)
++|++||++|++||+
T Consensus 277 ~t~~~ikalL~~sA~ 291 (291)
T cd04847 277 LSPETIRALLIHSAE 291 (291)
T ss_pred CCHHHHHHHHHhhcC
Confidence 999999999999984
No 25
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.2e-35 Score=311.38 Aligned_cols=87 Identities=31% Similarity=0.381 Sum_probs=69.5
Q ss_pred CCCCcEEeCCCcEEecCCCCCCCCCCCCCCCccceeeecCcccchhHHHHHHHHHHhhCCCCCHHHHHHHHHhhcccccC
Q 040458 465 ILKPDVIAPGLNILAAWPDKVGPSGIPTDKRKTEFNILSGTSMACPHVSGLAALLKAAHPDWSPAAIRSALMTTAYTVDN 544 (732)
Q Consensus 465 ~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~~ 544 (732)
..||||+|||.+|+++++.+ .|..++|||||||+|||++|||+|++|.+++.+++.+|+........
T Consensus 210 ~~~~dv~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~ 276 (297)
T cd07480 210 NGEVDIAAPGVDIVSAAPGG-------------GYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAART 276 (297)
T ss_pred CCceEEEeCCCCeEeecCCC-------------cEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhccc
Confidence 45789999999999998776 79999999999999999999999999999999988888854333110
Q ss_pred CCCccccCCCCCCCCCCCCCCCccccc
Q 040458 545 RGETMIDESTGNTSTALDFGAGHVHPQ 571 (732)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~G~G~vd~~ 571 (732)
. ..........+|+|++++.
T Consensus 277 ~-------~~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 277 T-------QFAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred C-------CCCCCCChhhcCCceeecC
Confidence 0 0122345668999999875
No 26
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7e-35 Score=304.66 Aligned_cols=80 Identities=28% Similarity=0.321 Sum_probs=64.4
Q ss_pred cccccCCCCCCCCCCCCCCcEEeCCCcEEecCCCCCCCCCCCCCCCccceeeecCcccchhHHHHHHHHHHh----h-CC
Q 040458 450 VASFSARGPNPETPEILKPDVIAPGLNILAAWPDKVGPSGIPTDKRKTEFNILSGTSMACPHVSGLAALLKA----A-HP 524 (732)
Q Consensus 450 ~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~-~p 524 (732)
++.||++|+.. ||+|||++|+++.+....... ......|..++|||||||||||++|||++ + +|
T Consensus 193 ~~~fSn~G~~v--------di~APG~~i~s~~~~~~~~~~---~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p 261 (277)
T cd04843 193 RLAFSNYGSRV--------DVYGWGENVTTTGYGDLQDLG---GENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGT 261 (277)
T ss_pred cccccCCCCcc--------ceEcCCCCeEecCCCCccccc---CCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCC
Confidence 78999999976 999999999999876431100 00111357899999999999999999975 3 49
Q ss_pred CCCHHHHHHHHHhhcc
Q 040458 525 DWSPAAIRSALMTTAY 540 (732)
Q Consensus 525 ~~sp~~ik~~L~~TA~ 540 (732)
+|+|+|||++|++|++
T Consensus 262 ~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 262 PLTPIEMRELLTATGT 277 (277)
T ss_pred CCCHHHHHHHHHhcCC
Confidence 9999999999999974
No 27
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-34 Score=305.71 Aligned_cols=82 Identities=40% Similarity=0.552 Sum_probs=65.8
Q ss_pred ccccccCCCCCCCCCCCCCCcEEeCCCcEEecCCCCCCCC--CCCCCCCccceeeecCcccchhHHHHHHHHHHhhCCCC
Q 040458 449 VVASFSARGPNPETPEILKPDVIAPGLNILAAWPDKVGPS--GIPTDKRKTEFNILSGTSMACPHVSGLAALLKAAHPDW 526 (732)
Q Consensus 449 ~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~--~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~ 526 (732)
.++.||++|+.. ||+|||.+|.++........ ..........|..++|||||||+|||++|||+|++|+|
T Consensus 202 ~~~~~S~~g~~v--------di~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~l 273 (285)
T cd07496 202 QRASYSNYGPAV--------DVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSL 273 (285)
T ss_pred CcccccCCCCCC--------CEEeCCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCC
Confidence 467899999986 99999999998876542110 00011122378999999999999999999999999999
Q ss_pred CHHHHHHHHHhh
Q 040458 527 SPAAIRSALMTT 538 (732)
Q Consensus 527 sp~~ik~~L~~T 538 (732)
++++||++|++|
T Consensus 274 t~~~v~~~L~~t 285 (285)
T cd07496 274 TPAQIESLLQST 285 (285)
T ss_pred CHHHHHHHHHhC
Confidence 999999999976
No 28
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=1.4e-34 Score=307.85 Aligned_cols=75 Identities=28% Similarity=0.248 Sum_probs=64.6
Q ss_pred CccccccCCCCCCCCCCCCCCcEEeCCCc-------EEecCCCCCCCCCCCCCCCccceeeecCcccchhHHHHHHHHHH
Q 040458 448 PVVASFSARGPNPETPEILKPDVIAPGLN-------ILAAWPDKVGPSGIPTDKRKTEFNILSGTSMACPHVSGLAALLK 520 (732)
Q Consensus 448 ~~~a~fSs~Gp~~~~~~~lKPDI~APG~~-------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~ 520 (732)
+.++.||++|+.. +++|||.. |+++..... ...|..++|||||||+|||++|||+
T Consensus 216 g~~~~~s~~g~~~--------~~~a~g~~~~~~~~~i~~~~~~~~----------~~~~~~~sGTS~AaP~VAG~aAll~ 277 (297)
T cd04059 216 GVRASYSEVGSSV--------LASAPSGGSGNPEASIVTTDLGGN----------CNCTSSHNGTSAAAPLAAGVIALML 277 (297)
T ss_pred CCCcCCCCCCCcE--------EEEecCCCCCCCCCceEeCCCCCC----------CCcccccCCcchhhhhhHhHHHHhh
Confidence 3567899999987 89999987 777766520 0167899999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHhhcc
Q 040458 521 AAHPDWSPAAIRSALMTTAY 540 (732)
Q Consensus 521 q~~p~~sp~~ik~~L~~TA~ 540 (732)
|+||+|++.|||.+|++||+
T Consensus 278 ~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 278 EANPNLTWRDVQHILALTAR 297 (297)
T ss_pred ccCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999985
No 29
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.3e-34 Score=298.12 Aligned_cols=211 Identities=34% Similarity=0.471 Sum_probs=155.1
Q ss_pred CccEEEEEecCCCCCCCCcccCCCCCCCCcccce---eecCCCCCCccCCceeEeeeecccCccccCCCCCCCCCCCCCC
Q 040458 135 SDLVIGVIDTGVWPERQSFNDRDLGPVPRKWKGQ---CVTTNDFPATSCNRKLIGARFFSQGYESTNGKMNETTEFRSPR 211 (732)
Q Consensus 135 ~GV~VgVIDTGId~~Hp~f~~~~~~~~~~~w~g~---~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~ 211 (732)
+||+|||||||||++||+|.+. .|... |..+.... ....+.. ..+|+.. .....+.
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~-------~~~~~~~~~~~~~~~~----~~~~~~~---~~~~~~~-------~~~~~~~ 60 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIPGNGIDDD----GNGYVDD---IYGWNFV-------NNDNDPM 60 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc-------cccCcccccccCcccC----CCCcccC---CCccccc-------CCCCCCC
Confidence 6999999999999999999865 23211 11111110 0000000 0022211 1234567
Q ss_pred CCCCCcccchhhhhcc---------------------------------------cccCCCeEEEecCCCCCCCCcccHH
Q 040458 212 DSDGHGTHTASIAAGS---------------------------------------AVSDGVDVVSLSVGGVVVPYFLDAI 252 (732)
Q Consensus 212 D~~gHGTHVAGi~ag~---------------------------------------Ai~dgvdVInlSlG~~~~~~~~~~~ 252 (732)
|..||||||||||+|+ +++.+++|||+|||.... ...+
T Consensus 61 d~~~HGT~va~ii~~~~~~~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~---~~~~ 137 (259)
T cd07473 61 DDNGHGTHVAGIIGAVGNNGIGIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP---SQAL 137 (259)
T ss_pred CCCCcHHHHHHHHHCcCCCCCceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC---CHHH
Confidence 8899999999999875 667899999999998532 5677
Q ss_pred HHHHHhhhcCCceEEEecCCCCCCCC---cccc--cCCCceeecCCCcCcccceeEEcCCCeEEeeeeeecCCCCCCCce
Q 040458 253 AIAAFGASDHGVFVSASAGNGGPGGL---TVTN--VAPWVTTVGAGTIDRDFPADVHLGNGKIIPGVSVYSGPGLKKDQM 327 (732)
Q Consensus 253 ~~~~~~a~~~Gi~vV~aAGN~G~~~~---~~~~--~~p~v~tVga~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~~ 327 (732)
..++.++.++|+++|+||||+|.... .++. ..+++++||+..
T Consensus 138 ~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~--------------------------------- 184 (259)
T cd07473 138 RDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATD--------------------------------- 184 (259)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecC---------------------------------
Confidence 88888999999999999999986522 2222 235566665521
Q ss_pred EEEEEcCCCCCCCCCccccCCCCCCCCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCCCccccccCCcccEE
Q 040458 328 YSLVYAGSESGDGYSASLCLEGSLDPAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFDGEGLVADCHVLPAT 407 (732)
Q Consensus 328 ~~lv~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~ 407 (732)
T Consensus 185 -------------------------------------------------------------------------------- 184 (259)
T cd07473 185 -------------------------------------------------------------------------------- 184 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEccccHHHHHHHHHhcCCCCCCceEEEEeceeEeccCCCCccccccCCCCCCCCCCCCCCcEEeCCCcEEecCCCCCCC
Q 040458 408 SVGAASGDEIRKYIMSAEKSKSPATATIVFKGTRVNVRPAPVVASFSARGPNPETPEILKPDVIAPGLNILAAWPDKVGP 487 (732)
Q Consensus 408 ~v~~~~g~~l~~~~~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~ 487 (732)
..+.++.||++||.. ||+.|||.++++..+..
T Consensus 185 --------------------------------------~~~~~~~~s~~g~~~-------~~~~apG~~~~~~~~~~--- 216 (259)
T cd07473 185 --------------------------------------SNDALASFSNYGKKT-------VDLAAPGVDILSTSPGG--- 216 (259)
T ss_pred --------------------------------------CCCCcCcccCCCCCC-------cEEEeccCCeEeccCCC---
Confidence 123456799999864 59999999999977655
Q ss_pred CCCCCCCCccceeeecCcccchhHHHHHHHHHHhhCCCCCHHHHHHHHHhhcc
Q 040458 488 SGIPTDKRKTEFNILSGTSMACPHVSGLAALLKAAHPDWSPAAIRSALMTTAY 540 (732)
Q Consensus 488 ~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~ 540 (732)
.|..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 217 ----------~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 217 ----------GYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred ----------cEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 7999999999999999999999999999999999999999984
No 30
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.8e-34 Score=297.83 Aligned_cols=201 Identities=33% Similarity=0.424 Sum_probs=153.6
Q ss_pred cEEEEEecCCCCCCCCcccCCCCCCCCcccceeecCCCCCCccCCceeEeeeecccCccccCCCCCCCCCCCCCCCCCCC
Q 040458 137 LVIGVIDTGVWPERQSFNDRDLGPVPRKWKGQCVTTNDFPATSCNRKLIGARFFSQGYESTNGKMNETTEFRSPRDSDGH 216 (732)
Q Consensus 137 V~VgVIDTGId~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~D~~gH 216 (732)
|+|||||+|||++||+|++.. ++...+.+.. . ...+.|..+|
T Consensus 1 V~VaviDsGi~~~hp~l~~~~-------------------------~~~~~~~~~~------~-------~~~~~~~~~H 42 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP-------------------------KLVPGWNFVS------N-------NDPTSDIDGH 42 (242)
T ss_pred CEEEEecCCCCCCChhhccCc-------------------------CccCCccccC------C-------CCCCCCCCCC
Confidence 789999999999999997530 0111111111 0 1135678999
Q ss_pred cccchhhhhcc---------------------------------------cccCCCeEEEecCCCCCC-CCcccHHHHHH
Q 040458 217 GTHTASIAAGS---------------------------------------AVSDGVDVVSLSVGGVVV-PYFLDAIAIAA 256 (732)
Q Consensus 217 GTHVAGi~ag~---------------------------------------Ai~dgvdVInlSlG~~~~-~~~~~~~~~~~ 256 (732)
||||||||+|+ +++.+++|||||||.... ......+..++
T Consensus 43 GT~vAgiiag~~~~~~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~~ 122 (242)
T cd07498 43 GTACAGVAAAVGNNGLGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNAA 122 (242)
T ss_pred HHHHHHHHHhccCCCceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchHHHHHHHHH
Confidence 99999999986 566799999999998533 22345667777
Q ss_pred Hhhhc-CCceEEEecCCCCCCCCcccccCCCceeecCCCcCcccceeEEcCCCeEEeeeeeecCCCCCCCceEEEEEcCC
Q 040458 257 FGASD-HGVFVSASAGNGGPGGLTVTNVAPWVTTVGAGTIDRDFPADVHLGNGKIIPGVSVYSGPGLKKDQMYSLVYAGS 335 (732)
Q Consensus 257 ~~a~~-~Gi~vV~aAGN~G~~~~~~~~~~p~v~tVga~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~~~~lv~~~~ 335 (732)
..+.+ +|+++|+||||+|......++..+++++||+.+.
T Consensus 123 ~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~---------------------------------------- 162 (242)
T cd07498 123 TYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDS---------------------------------------- 162 (242)
T ss_pred HHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCC----------------------------------------
Confidence 77888 9999999999999876666777888999987321
Q ss_pred CCCCCCCccccCCCCCCCCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCCCccccccCCcccEEEEccccHH
Q 040458 336 ESGDGYSASLCLEGSLDPAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFDGEGLVADCHVLPATSVGAASGD 415 (732)
Q Consensus 336 ~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~v~~~~g~ 415 (732)
T Consensus 163 -------------------------------------------------------------------------------- 162 (242)
T cd07498 163 -------------------------------------------------------------------------------- 162 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCCCCceEEEEeceeEeccCCCCccccccCCCCCCCCCCCCCCcEEeCCCcEEecCCCCCCCCCCCCCCC
Q 040458 416 EIRKYIMSAEKSKSPATATIVFKGTRVNVRPAPVVASFSARGPNPETPEILKPDVIAPGLNILAAWPDKVGPSGIPTDKR 495 (732)
Q Consensus 416 ~l~~~~~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 495 (732)
.+.++.||++||.. |++|||.+++......... .+..
T Consensus 163 -------------------------------~~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~----~~~~ 199 (242)
T cd07498 163 -------------------------------NDARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSA----GDYP 199 (242)
T ss_pred -------------------------------CCCccCcCCCCCCe--------EEEeCcCCcccCCcccccc----ccCC
Confidence 12457899999986 9999999999885442111 1112
Q ss_pred ccceeeecCcccchhHHHHHHHHHHhhCCCCCHHHHHHHHHhh
Q 040458 496 KTEFNILSGTSMACPHVSGLAALLKAAHPDWSPAAIRSALMTT 538 (732)
Q Consensus 496 ~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~sp~~ik~~L~~T 538 (732)
...|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 200 ~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 200 GGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred CCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 2378999999999999999999999999999999999999975
No 31
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.6e-34 Score=291.61 Aligned_cols=192 Identities=27% Similarity=0.312 Sum_probs=144.6
Q ss_pred ccEEEEEecCCCCCCCCcccCCCCCCCCcccceeecCCCCCCccCCceeEeeeeccc-CccccCCCCCCCCCCCCCCCCC
Q 040458 136 DLVIGVIDTGVWPERQSFNDRDLGPVPRKWKGQCVTTNDFPATSCNRKLIGARFFSQ-GYESTNGKMNETTEFRSPRDSD 214 (732)
Q Consensus 136 GV~VgVIDTGId~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~-g~~~~~~~~~~~~~~~~~~D~~ 214 (732)
||+|||||||||++||+|.+.-. ..+.+.. .+ ..+.....|..
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~---------------------------~~~~~~~~~~---------~~~~~~~~d~~ 44 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLAL---------------------------DGEVTIDLEI---------IVVSAEGGDKD 44 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccc---------------------------cccccccccc---------ccCCCCCCCCC
Confidence 79999999999999999975411 0000100 00 01123456789
Q ss_pred CCcccchhhhhcc-----------------------------cccCCCeEEEecCCCCCCCCcccHHHHHHHhhhcCCce
Q 040458 215 GHGTHTASIAAGS-----------------------------AVSDGVDVVSLSVGGVVVPYFLDAIAIAAFGASDHGVF 265 (732)
Q Consensus 215 gHGTHVAGi~ag~-----------------------------Ai~dgvdVInlSlG~~~~~~~~~~~~~~~~~a~~~Gi~ 265 (732)
||||||||||++. +++.|++|||||||..... ....+..++.++.++|++
T Consensus 45 gHGT~vAgiia~~~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~-~~~~~~~~~~~a~~~g~l 123 (222)
T cd07492 45 GHGTACAGIIKKYAPEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGDR-DFPLLKELLEYAYKAGGI 123 (222)
T ss_pred CcHHHHHHHHHccCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC-cCHHHHHHHHHHHHCCCE
Confidence 9999999999988 6778999999999985322 235667778888899999
Q ss_pred EEEecCCCCCCCCcccccCCCceeecCCCcCcccceeEEcCCCeEEeeeeeecCCCCCCCceEEEEEcCCCCCCCCCccc
Q 040458 266 VSASAGNGGPGGLTVTNVAPWVTTVGAGTIDRDFPADVHLGNGKIIPGVSVYSGPGLKKDQMYSLVYAGSESGDGYSASL 345 (732)
Q Consensus 266 vV~aAGN~G~~~~~~~~~~p~v~tVga~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~ 345 (732)
+|+||||++..... ++..+.+++|++...+
T Consensus 124 ~V~aagN~~~~~~~-Pa~~~~vi~V~~~~~~------------------------------------------------- 153 (222)
T cd07492 124 IVAAAPNNNDIGTP-PASFPNVIGVKSDTAD------------------------------------------------- 153 (222)
T ss_pred EEEECCCCCCCCCC-CccCCceEEEEecCCC-------------------------------------------------
Confidence 99999999864332 4556667777652100
Q ss_pred cCCCCCCCCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCCCccccccCCcccEEEEccccHHHHHHHHHhcC
Q 040458 346 CLEGSLDPAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFDGEGLVADCHVLPATSVGAASGDEIRKYIMSAE 425 (732)
Q Consensus 346 C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~ 425 (732)
T Consensus 154 -------------------------------------------------------------------------------- 153 (222)
T cd07492 154 -------------------------------------------------------------------------------- 153 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCceEEEEeceeEeccCCCCccccccCCCCCCCCCCCCCCcEEeCCCcEEecCCCCCCCCCCCCCCCccceeeecCc
Q 040458 426 KSKSPATATIVFKGTRVNVRPAPVVASFSARGPNPETPEILKPDVIAPGLNILAAWPDKVGPSGIPTDKRKTEFNILSGT 505 (732)
Q Consensus 426 ~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGT 505 (732)
... +.+++ ++|+.|||.+|+++++.+ .|..++||
T Consensus 154 ----------------------~~~---~~~~~--------~~~~~apg~~i~~~~~~~-------------~~~~~~GT 187 (222)
T cd07492 154 ----------------------DPK---SFWYI--------YVEFSADGVDIIAPAPHG-------------RYLTVSGN 187 (222)
T ss_pred ----------------------CCc---ccccC--------CceEEeCCCCeEeecCCC-------------CEEEeccH
Confidence 000 11122 349999999999998875 79999999
Q ss_pred ccchhHHHHHHHHHHhhCCCCCHHHHHHHHHhhcc
Q 040458 506 SMACPHVSGLAALLKAAHPDWSPAAIRSALMTTAY 540 (732)
Q Consensus 506 SMAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~ 540 (732)
|||||+|||++|||+|++|+|+++|||++|++||+
T Consensus 188 S~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 188 SFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999985
No 32
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=1.1e-33 Score=300.61 Aligned_cols=86 Identities=30% Similarity=0.342 Sum_probs=64.3
Q ss_pred CCCccccccCCCCCCCCCCCCCCcEEeCCCcEEecCCCCCCC---CC------CCCCCCccceeeecCcccchhHHHHHH
Q 040458 446 PAPVVASFSARGPNPETPEILKPDVIAPGLNILAAWPDKVGP---SG------IPTDKRKTEFNILSGTSMACPHVSGLA 516 (732)
Q Consensus 446 ~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~---~~------~~~~~~~~~y~~~sGTSMAaP~VAG~a 516 (732)
..+.++.||++|+.. +|++|||+++....+..... .. .........|..++|||||||+|||++
T Consensus 199 ~~~~~~~~S~~g~~~-------~~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~a 271 (294)
T cd07482 199 NNGNLSSFSNYGNSR-------IDLAAPGGDFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGAL 271 (294)
T ss_pred CCCCcCccccCCCCc-------ceEECCCCCcccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHH
Confidence 345778899998765 49999999986332211100 00 000122347899999999999999999
Q ss_pred HHHHhhCCCCCH-HHHHHHHHhh
Q 040458 517 ALLKAAHPDWSP-AAIRSALMTT 538 (732)
Q Consensus 517 ALl~q~~p~~sp-~~ik~~L~~T 538 (732)
|||+|++|.+++ .|||++|++|
T Consensus 272 All~~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 272 ALIIDKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred HHHHHHCCCCCcHHHHHHHHhhC
Confidence 999999999999 9999999986
No 33
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.1e-34 Score=292.38 Aligned_cols=127 Identities=24% Similarity=0.251 Sum_probs=91.3
Q ss_pred CCccEEEEEecCCCCCCCCcccCCCCCCCCcccceeecCCCCCCccCCceeEeeeecccCccccCCCCCCCCCCCCCCCC
Q 040458 134 GSDLVIGVIDTGVWPERQSFNDRDLGPVPRKWKGQCVTTNDFPATSCNRKLIGARFFSQGYESTNGKMNETTEFRSPRDS 213 (732)
Q Consensus 134 G~GV~VgVIDTGId~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~D~ 213 (732)
|++|+|||||||||++||+|++. ++..++|...... + ........|+
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~---------------------------i~~~~~~~~~~~~--~----~~~~~~~~d~ 48 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK---------------------------IIGGKSFSPYEGD--G----NKVSPYYVSA 48 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc---------------------------cccCCCCCCCCCC--c----ccCCCCCCCC
Confidence 78999999999999999999753 1222222221000 0 0001123578
Q ss_pred CCCcccchhhhhcc-----------------------------------cccCCCeEEEecCCCCCCC---CcccHHHHH
Q 040458 214 DGHGTHTASIAAGS-----------------------------------AVSDGVDVVSLSVGGVVVP---YFLDAIAIA 255 (732)
Q Consensus 214 ~gHGTHVAGi~ag~-----------------------------------Ai~dgvdVInlSlG~~~~~---~~~~~~~~~ 255 (732)
.||||||||||+|- |+++|+||||||||..... .....+..+
T Consensus 49 ~gHGT~vAgiI~gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~~~~~~l~~a 128 (247)
T cd07491 49 DGHGTAMARMICRICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPEDNDNDINELENA 128 (247)
T ss_pred CCcHHHHHHHHHHHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeecccccccccchHHHHHH
Confidence 99999999999985 7788999999999985321 125678888
Q ss_pred HHhhhcCCceEEEecCCCCCCCC-cc--cccCCCceeecCC
Q 040458 256 AFGASDHGVFVSASAGNGGPGGL-TV--TNVAPWVTTVGAG 293 (732)
Q Consensus 256 ~~~a~~~Gi~vV~aAGN~G~~~~-~~--~~~~p~v~tVga~ 293 (732)
+.+|.++|++||+||||+|.... .+ +...|++++|||.
T Consensus 129 i~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~ 169 (247)
T cd07491 129 IKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAA 169 (247)
T ss_pred HHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEee
Confidence 88999999999999999997654 22 3456788888773
No 34
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=1.3e-33 Score=288.84 Aligned_cols=189 Identities=37% Similarity=0.584 Sum_probs=152.0
Q ss_pred ccEEEEEecCCCCCCCCcccCCCCCCCCcccceeecCCCCCCccCCceeEeeeecccCccccCCCCCCCCCCCCCCCCCC
Q 040458 136 DLVIGVIDTGVWPERQSFNDRDLGPVPRKWKGQCVTTNDFPATSCNRKLIGARFFSQGYESTNGKMNETTEFRSPRDSDG 215 (732)
Q Consensus 136 GV~VgVIDTGId~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~D~~g 215 (732)
||+|||||+||+++||+|.+. ++..++|... . ...+.|..+
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~---------------------------~~~~~~~~~~-----------~-~~~~~~~~~ 41 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN---------------------------IVGGANFTGD-----------D-NNDYQDGNG 41 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc---------------------------ccCcccccCC-----------C-CCCCCCCCC
Confidence 799999999999999999753 1122222221 0 023567889
Q ss_pred Ccccchhhhhcc--------------------------------------cccCCCeEEEecCCCCCCCCcccHHHHHHH
Q 040458 216 HGTHTASIAAGS--------------------------------------AVSDGVDVVSLSVGGVVVPYFLDAIAIAAF 257 (732)
Q Consensus 216 HGTHVAGi~ag~--------------------------------------Ai~dgvdVInlSlG~~~~~~~~~~~~~~~~ 257 (732)
|||||||||++. +++.|++|||||||... ....+..++.
T Consensus 42 HGT~vA~ii~~~~~~~~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~---~~~~~~~~~~ 118 (229)
T cd07477 42 HGTHVAGIIAALDNGVGVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS---DSPALREAIK 118 (229)
T ss_pred CHHHHHHHHhcccCCCccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC---CCHHHHHHHH
Confidence 999999999885 66779999999999742 2345677777
Q ss_pred hhhcCCceEEEecCCCCCCCCcc--cccCCCceeecCCCcCcccceeEEcCCCeEEeeeeeecCCCCCCCceEEEEEcCC
Q 040458 258 GASDHGVFVSASAGNGGPGGLTV--TNVAPWVTTVGAGTIDRDFPADVHLGNGKIIPGVSVYSGPGLKKDQMYSLVYAGS 335 (732)
Q Consensus 258 ~a~~~Gi~vV~aAGN~G~~~~~~--~~~~p~v~tVga~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~~~~lv~~~~ 335 (732)
.+.++|+++|+||||++...... ++..+++++||+...
T Consensus 119 ~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~---------------------------------------- 158 (229)
T cd07477 119 KAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDS---------------------------------------- 158 (229)
T ss_pred HHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecC----------------------------------------
Confidence 88999999999999999776554 667778888876321
Q ss_pred CCCCCCCccccCCCCCCCCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCCCccccccCCcccEEEEccccHH
Q 040458 336 ESGDGYSASLCLEGSLDPAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFDGEGLVADCHVLPATSVGAASGD 415 (732)
Q Consensus 336 ~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~v~~~~g~ 415 (732)
T Consensus 159 -------------------------------------------------------------------------------- 158 (229)
T cd07477 159 -------------------------------------------------------------------------------- 158 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCCCCceEEEEeceeEeccCCCCccccccCCCCCCCCCCCCCCcEEeCCCcEEecCCCCCCCCCCCCCCC
Q 040458 416 EIRKYIMSAEKSKSPATATIVFKGTRVNVRPAPVVASFSARGPNPETPEILKPDVIAPGLNILAAWPDKVGPSGIPTDKR 495 (732)
Q Consensus 416 ~l~~~~~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 495 (732)
.+.++.||++|+.. |+.|||.+|+++++.+
T Consensus 159 -------------------------------~~~~~~~s~~g~~~--------~~~apg~~i~~~~~~~----------- 188 (229)
T cd07477 159 -------------------------------NNNRASFSSTGPEV--------ELAAPGVDILSTYPNN----------- 188 (229)
T ss_pred -------------------------------CCCcCCccCCCCCc--------eEEeCCCCeEEecCCC-----------
Confidence 12456789999875 9999999999998875
Q ss_pred ccceeeecCcccchhHHHHHHHHHHhhCCCCCHHHHHHHHHhh
Q 040458 496 KTEFNILSGTSMACPHVSGLAALLKAAHPDWSPAAIRSALMTT 538 (732)
Q Consensus 496 ~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~sp~~ik~~L~~T 538 (732)
.|..++|||||||+|||++|||+|++|.+++.+||++|++|
T Consensus 189 --~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 189 --DYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred --CEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 78999999999999999999999999999999999999976
No 35
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=2.4e-34 Score=303.73 Aligned_cols=235 Identities=37% Similarity=0.527 Sum_probs=172.8
Q ss_pred EEEEEecCCCCCCCCcc-cCCCCCCCCcccceeecCCCCCCccCCceeEeeeecccCccccCCCCCCCCCCCCCCCCCCC
Q 040458 138 VIGVIDTGVWPERQSFN-DRDLGPVPRKWKGQCVTTNDFPATSCNRKLIGARFFSQGYESTNGKMNETTEFRSPRDSDGH 216 (732)
Q Consensus 138 ~VgVIDTGId~~Hp~f~-~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~D~~gH 216 (732)
+|||||||||++||+|. .. ....++.+.+.|.++. .......|..+|
T Consensus 1 ~V~viDtGid~~h~~~~~~~----------------------~~~~~~~~~~~~~~~~----------~~~~~~~~~~~H 48 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN----------------------FIWSKVPGGYNFVDGN----------PNPSPSDDDNGH 48 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT----------------------EEEEEEEEEEETTTTB----------STTTSSSTSSSH
T ss_pred CEEEEcCCcCCCChhHccCC----------------------cccccccceeeccCCC----------CCcCccccCCCc
Confidence 69999999999999997 32 0112344555555531 112345678999
Q ss_pred cccchhhhhcc---------------------------------------cc-cCCCeEEEecCCCCCC---CCcccHHH
Q 040458 217 GTHTASIAAGS---------------------------------------AV-SDGVDVVSLSVGGVVV---PYFLDAIA 253 (732)
Q Consensus 217 GTHVAGi~ag~---------------------------------------Ai-~dgvdVInlSlG~~~~---~~~~~~~~ 253 (732)
||||||||+|. ++ .++++|||||||.... ....+.+.
T Consensus 49 GT~va~ii~~~~~~~~~~~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~ 128 (282)
T PF00082_consen 49 GTHVAGIIAGNGGNNGPGINGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDILE 128 (282)
T ss_dssp HHHHHHHHHHTTSSSSSSETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHHH
T ss_pred cchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhccCCccccccccccccccccccccccc
Confidence 99999999643 44 6788999999987321 22234456
Q ss_pred HHHHhhhcCCceEEEecCCCCCCCCc---ccccCCCceeecCCCcCcccceeEEcCCCeEEeeeeeecCCCCCCCceEEE
Q 040458 254 IAAFGASDHGVFVSASAGNGGPGGLT---VTNVAPWVTTVGAGTIDRDFPADVHLGNGKIIPGVSVYSGPGLKKDQMYSL 330 (732)
Q Consensus 254 ~~~~~a~~~Gi~vV~aAGN~G~~~~~---~~~~~p~v~tVga~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~~~~l 330 (732)
.+...+.++|+++|+||||+|..... .+...+++++||+..
T Consensus 129 ~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~------------------------------------ 172 (282)
T PF00082_consen 129 EAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVD------------------------------------ 172 (282)
T ss_dssp HHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEE------------------------------------
T ss_pred cccccccccCcceeeccccccccccccccccccccccccccccc------------------------------------
Confidence 66668899999999999999876542 344456677776521
Q ss_pred EEcCCCCCCCCCccccCCCCCCCCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCCCccccccCCcccEEEEc
Q 040458 331 VYAGSESGDGYSASLCLEGSLDPAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFDGEGLVADCHVLPATSVG 410 (732)
Q Consensus 331 v~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~v~ 410 (732)
T Consensus 173 -------------------------------------------------------------------------------- 172 (282)
T PF00082_consen 173 -------------------------------------------------------------------------------- 172 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccHHHHHHHHHhcCCCCCCceEEEEeceeEeccCCCCccccccCCCCCCCCCCCCCCcEEeCCCcEEecCCCCCCCCCC
Q 040458 411 AASGDEIRKYIMSAEKSKSPATATIVFKGTRVNVRPAPVVASFSARGPNPETPEILKPDVIAPGLNILAAWPDKVGPSGI 490 (732)
Q Consensus 411 ~~~g~~l~~~~~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~ 490 (732)
....++.||++|+... .+++||||+|||.+|+++++....
T Consensus 173 -----------------------------------~~~~~~~~s~~g~~~~-~~~~~~di~a~G~~i~~~~~~~~~---- 212 (282)
T PF00082_consen 173 -----------------------------------NNGQPASYSNYGGPSD-DGRIKPDIAAPGGNILSAVPGSDR---- 212 (282)
T ss_dssp -----------------------------------TTSSBSTTSSBSTTET-TCTTCEEEEEECSSEEEEETTTES----
T ss_pred -----------------------------------cccccccccccccccc-cccccccccccccccccccccccc----
Confidence 1124578999976553 389999999999999998876520
Q ss_pred CCCCCccceeeecCcccchhHHHHHHHHHHhhCCCCCHHHHHHHHHhhcccccCCCCccccCCCCCCCCCCCCCCCcccc
Q 040458 491 PTDKRKTEFNILSGTSMACPHVSGLAALLKAAHPDWSPAAIRSALMTTAYTVDNRGETMIDESTGNTSTALDFGAGHVHP 570 (732)
Q Consensus 491 ~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~ 570 (732)
..|..++|||||||+|||++|||+|++|+|++.+||.+|++||.++...+ .......||||+||+
T Consensus 213 ------~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~---------~~~~~~~~G~G~in~ 277 (282)
T PF00082_consen 213 ------GSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN---------GEGYDNSYGWGLINA 277 (282)
T ss_dssp ------EEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT---------SSSSHHHHTTSBE-H
T ss_pred ------ccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC---------CCCCCCCccCChhCH
Confidence 15889999999999999999999999999999999999999999886211 234455889999999
Q ss_pred cccCC
Q 040458 571 QKAMN 575 (732)
Q Consensus 571 ~~A~~ 575 (732)
.+|++
T Consensus 278 ~~a~~ 282 (282)
T PF00082_consen 278 EKALN 282 (282)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99874
No 36
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-32 Score=291.79 Aligned_cols=348 Identities=25% Similarity=0.348 Sum_probs=247.4
Q ss_pred CCCCCCCCCeEEEEeCCCCCCCCCcchHHHHHHhhccCC---------CcEEEEecceeeEEEEEcCH-----HHHHHHh
Q 040458 25 NKNEAETPKTFIIKVQYDAKPSIFPTHKHWYESSLSSAS---------ATLLHTYDTVFHGFSAKLTP-----SEALRLK 90 (732)
Q Consensus 25 ~~~~~~~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~y~~~~ng~s~~~~~-----~~~~~L~ 90 (732)
..+....+.+|||.|+..... ..+...+++.++..+ ...-..|..-|.-.-++-.. -+++.|.
T Consensus 42 ~f~~tvve~EyIv~F~~y~~A---k~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe 118 (1033)
T KOG4266|consen 42 PFNVTVVESEYIVRFKQYKPA---KDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLE 118 (1033)
T ss_pred ccceeeecceeEEEecccccc---hHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehh
Confidence 345566788999999976542 346667777777544 22333455555555554432 3578999
Q ss_pred CCCCeEEEEeceeeeccc------------CCCCcccC-C---------------cC-----------CCCccccccccC
Q 040458 91 TLPHVLAVFSEQVRHLHT------------TRSPQFLG-L---------------KS-----------SSDSAGLLLKES 131 (732)
Q Consensus 91 ~~p~V~~V~~~~~~~~~~------------~~s~~~~g-l---------------~~-----------~~~~~~~~~~~~ 131 (732)
.+|+|+.|.|.+.+.+-. +.+-+++. . .+ .-+ ++-+|+.|
T Consensus 119 ~hp~vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~-Ad~LWk~G 197 (1033)
T KOG4266|consen 119 MHPDVKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLG-ADHLWKKG 197 (1033)
T ss_pred cCCCceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhc-hhhHHhcc
Confidence 999999999998776521 00000110 0 00 001 45689999
Q ss_pred CCCCccEEEEEecCCCCCCCCcccCCCCCCCCcccceeecCCCCCCccCCceeEeeeecccCccccCCCCCCCCCCCCCC
Q 040458 132 DFGSDLVIGVIDTGVWPERQSFNDRDLGPVPRKWKGQCVTTNDFPATSCNRKLIGARFFSQGYESTNGKMNETTEFRSPR 211 (732)
Q Consensus 132 ~~G~GV~VgVIDTGId~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~ 211 (732)
++|++|+|||.|||+.-+||.|+..-. ...| .| ...-.
T Consensus 198 yTGa~VkvAiFDTGl~~~HPHFrnvKE---RTNW--------------TN-------------------------E~tLd 235 (1033)
T KOG4266|consen 198 YTGAKVKVAIFDTGLRADHPHFRNVKE---RTNW--------------TN-------------------------EDTLD 235 (1033)
T ss_pred ccCCceEEEEeecccccCCccccchhh---hcCC--------------cC-------------------------ccccc
Confidence 999999999999999999999974300 0011 00 12334
Q ss_pred CCCCCcccchhhhhcc-----------------------------------cccCCCeEEEecCCCCCCCCcccHHHHHH
Q 040458 212 DSDGHGTHTASIAAGS-----------------------------------AVSDGVDVVSLSVGGVVVPYFLDAIAIAA 256 (732)
Q Consensus 212 D~~gHGTHVAGi~ag~-----------------------------------Ai~dgvdVInlSlG~~~~~~~~~~~~~~~ 256 (732)
|..||||.|||+|||. ||...+||+|+|+|++ ++.+.|+.+-+
T Consensus 236 D~lgHGTFVAGvia~~~ec~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGP--DfmD~PFVeKV 313 (1033)
T KOG4266|consen 236 DNLGHGTFVAGVIAGRNECLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGP--DFMDLPFVEKV 313 (1033)
T ss_pred cCcccceeEeeeeccchhhcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCc--ccccchHHHHH
Confidence 6889999999999998 8888999999999985 34456777777
Q ss_pred HhhhcCCceEEEecCCCCCCCCcccccCCCceeecCCCcCcccceeEEcCCCeEEeeeeeecCCCCCCCceEEEEEcCCC
Q 040458 257 FGASDHGVFVSASAGNGGPGGLTVTNVAPWVTTVGAGTIDRDFPADVHLGNGKIIPGVSVYSGPGLKKDQMYSLVYAGSE 336 (732)
Q Consensus 257 ~~a~~~Gi~vV~aAGN~G~~~~~~~~~~p~v~tVga~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~~~~lv~~~~~ 336 (732)
.....+.|++|.|+||+||-.++..+.++-.-.||.+
T Consensus 314 wEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVG------------------------------------------- 350 (1033)
T KOG4266|consen 314 WELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVG------------------------------------------- 350 (1033)
T ss_pred HhhccCcEEEEEecCCCCcceeecCCcccccceeeec-------------------------------------------
Confidence 8889999999999999999887766654421111111
Q ss_pred CCCCCCccccCCCCCCCCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCCCccccccCCcccEEEEccccHHH
Q 040458 337 SGDGYSASLCLEGSLDPAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFDGEGLVADCHVLPATSVGAASGDE 416 (732)
Q Consensus 337 ~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~v~~~~g~~ 416 (732)
T Consensus 351 -------------------------------------------------------------------------------- 350 (1033)
T KOG4266|consen 351 -------------------------------------------------------------------------------- 350 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCCCCceEEEEeceeEeccCCCCccccccCCCCCCC----CCCCCCCcEEeCCCcEEecCCCCCCCCCCCC
Q 040458 417 IRKYIMSAEKSKSPATATIVFKGTRVNVRPAPVVASFSARGPNPE----TPEILKPDVIAPGLNILAAWPDKVGPSGIPT 492 (732)
Q Consensus 417 l~~~~~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~~~----~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~ 492 (732)
+.+-.+.++.|||||-+.. ..+|+||||++-|.+|.......
T Consensus 351 --------------------------GIdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~~-------- 396 (1033)
T KOG4266|consen 351 --------------------------GIDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVST-------- 396 (1033)
T ss_pred --------------------------cccccchhhhhccCCcceeecCCcccccCCceEeeccccccCcccc--------
Confidence 1122357899999997753 34899999999999999776654
Q ss_pred CCCccceeeecCcccchhHHHHHHHHHHh----hCCCCCHHHHHHHHHhhcccccCCCCccccCCCCCCCCCCCCCCCcc
Q 040458 493 DKRKTEFNILSGTSMACPHVSGLAALLKA----AHPDWSPAAIRSALMTTAYTVDNRGETMIDESTGNTSTALDFGAGHV 568 (732)
Q Consensus 493 ~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~~p~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~v 568 (732)
+...+||||.|+|.|||+++||.+ +.--++|+.+|.+|+..|.+++. ..-++||+|++
T Consensus 397 -----GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg-------------~NMfEQGaGkl 458 (1033)
T KOG4266|consen 397 -----GCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPG-------------PNMFEQGAGKL 458 (1033)
T ss_pred -----cchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCC-------------CchhhccCcch
Confidence 678999999999999999999976 34557999999999999999863 23479999999
Q ss_pred cccccCCCCccc-----------cCCchhhhhhhhccC
Q 040458 569 HPQKAMNPGLIY-----------DLTSYDYVNFLCNSN 595 (732)
Q Consensus 569 d~~~A~~~~lv~-----------d~~~~dy~~~lc~~~ 595 (732)
|+.++.+--+-| |.+..-|+.-.|++.
T Consensus 459 dLL~syqiL~SYkP~asl~PsylD~t~cpYmWPycsQP 496 (1033)
T KOG4266|consen 459 DLLESYQILKSYKPRASLFPSYLDYTDCPYMWPYCSQP 496 (1033)
T ss_pred hHHHHHHHHHhcCCCceecchhcccccCcccCccccCc
Confidence 998877632223 333333555557766
No 37
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=99.98 E-value=3.7e-32 Score=284.42 Aligned_cols=72 Identities=40% Similarity=0.503 Sum_probs=62.3
Q ss_pred ccCCCCCCCCCCCCCCcEEeCCCcEEecCCCCCCCCCCCCCCCccceeeecCcccchhHHHHHHHHHHhhCCCCCHHHHH
Q 040458 453 FSARGPNPETPEILKPDVIAPGLNILAAWPDKVGPSGIPTDKRKTEFNILSGTSMACPHVSGLAALLKAAHPDWSPAAIR 532 (732)
Q Consensus 453 fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~sp~~ik 532 (732)
||++|+... .+++.|||.+|+++.+.... .|..++|||||||+|||++||++|++|.+++++||
T Consensus 196 ~s~~~~~~~-----~~~~~apG~~i~~~~~~~~~-----------~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~ 259 (267)
T cd04848 196 YSNRCGVAA-----NWCLAAPGENIYSTDPDGGN-----------GYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVR 259 (267)
T ss_pred ccccchhhh-----hheeecCcCceeecccCCCC-----------cccccceeEchHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 488887543 34799999999999874211 78999999999999999999999999999999999
Q ss_pred HHHHhhcc
Q 040458 533 SALMTTAY 540 (732)
Q Consensus 533 ~~L~~TA~ 540 (732)
++|++||+
T Consensus 260 ~~l~~tA~ 267 (267)
T cd04848 260 QTLLTTAT 267 (267)
T ss_pred HHHHhhcC
Confidence 99999985
No 38
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.96 E-value=1.2e-29 Score=260.04 Aligned_cols=71 Identities=30% Similarity=0.327 Sum_probs=55.9
Q ss_pred ccccCC--CCCCCCCCCCCCcEEeCCCcEEecCCCCCCCCCCCCCCCccceeeecCcccchhHHHHHHHHHHhhCCCCC-
Q 040458 451 ASFSAR--GPNPETPEILKPDVIAPGLNILAAWPDKVGPSGIPTDKRKTEFNILSGTSMACPHVSGLAALLKAAHPDWS- 527 (732)
Q Consensus 451 a~fSs~--Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s- 527 (732)
+.||++ ||+. .+..||||+|||++|++ +.+ .|..++|||||||||||++|||++++|++.
T Consensus 168 s~~sn~~~~~~~--~~~~~~di~APG~~i~s--~~~-------------~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~ 230 (247)
T cd07488 168 SDVSNAGSEINS--YGRRKVLIVAPGSNYNL--PDG-------------KDDFVSGTSFSAPLVTGIIALLLEFYDRQYK 230 (247)
T ss_pred cccccccCCCCC--CCCceeEEEEeeeeEEC--CCC-------------ceeeecccchHHHHHHHHHHHHHHHChhhhh
Confidence 455664 4444 37899999999999998 332 688999999999999999999999987765
Q ss_pred -----HHHHHHHHHhh
Q 040458 528 -----PAAIRSALMTT 538 (732)
Q Consensus 528 -----p~~ik~~L~~T 538 (732)
--++|.+|+++
T Consensus 231 ~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 231 KGNNNLIALRALVSSS 246 (247)
T ss_pred CcchhHHHHHHHHhcc
Confidence 44566666655
No 39
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.3e-28 Score=269.33 Aligned_cols=101 Identities=28% Similarity=0.396 Sum_probs=85.6
Q ss_pred ccccccCCCCCCCCCCCCCCcEEeCCCcEEecCCCCCCCCCCCCCCCccceeeecCcccchhHHHHHHHHHHh----hCC
Q 040458 449 VVASFSARGPNPETPEILKPDVIAPGLNILAAWPDKVGPSGIPTDKRKTEFNILSGTSMACPHVSGLAALLKA----AHP 524 (732)
Q Consensus 449 ~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~~p 524 (732)
....+|||||+.| |.+--.|.|||+-|.+.-.-.. ..-..|.|||||+|+++|.+|||++ .+-
T Consensus 453 ~~YtWsSRgP~~D--G~lGVsi~APggAiAsVP~~tl-----------q~~qLMNGTSMsSP~acG~IAllLSgLKa~ni 519 (1304)
T KOG1114|consen 453 NPYTWSSRGPCLD--GDLGVSISAPGGAIASVPQYTL-----------QNSQLMNGTSMSSPSACGAIALLLSGLKAQNI 519 (1304)
T ss_pred CccccccCCCCcC--CCcceEEecCCccccCCchhhh-----------hhhhhhCCcccCCccccchHHHHHHHHHhcCC
Confidence 4678999999997 8999999999999876432211 1457999999999999999999965 567
Q ss_pred CCCHHHHHHHHHhhcccccCCCCccccCCCCCCCCCCCCCCCcccccccCC
Q 040458 525 DWSPAAIRSALMTTAYTVDNRGETMIDESTGNTSTALDFGAGHVHPQKAMN 575 (732)
Q Consensus 525 ~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~ 575 (732)
.|||..||.+|++||+++.+ -.+|.||.|+|++.+|.+
T Consensus 520 ~ytpysVrrAlenTa~~l~~-------------id~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 520 PYTPYSVRRALENTATKLGD-------------IDSFAQGQGMLQVDKAYE 557 (1304)
T ss_pred CCcHHHHHHHHHhcccccCc-------------cchhccCcceeehhHHHH
Confidence 89999999999999999863 257899999999999987
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.93 E-value=1.1e-25 Score=230.79 Aligned_cols=159 Identities=44% Similarity=0.593 Sum_probs=124.7
Q ss_pred CCCCCCCCcccchhhhhcc--------------------------------------cc-cCCCeEEEecCCCCCCCCcc
Q 040458 209 SPRDSDGHGTHTASIAAGS--------------------------------------AV-SDGVDVVSLSVGGVVVPYFL 249 (732)
Q Consensus 209 ~~~D~~gHGTHVAGi~ag~--------------------------------------Ai-~dgvdVInlSlG~~~~~~~~ 249 (732)
...|..+|||||||+|++. ++ ..+++|||||||..... ..
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~~~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~-~~ 117 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNGGGVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSP-PS 117 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCCCCEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCC-CC
Confidence 3457889999999999988 44 67999999999985333 34
Q ss_pred cHHHHHHHhhhcC-CceEEEecCCCCCCCC---cccccCCCceeecCCCcCcccceeEEcCCCeEEeeeeeecCCCCCCC
Q 040458 250 DAIAIAAFGASDH-GVFVSASAGNGGPGGL---TVTNVAPWVTTVGAGTIDRDFPADVHLGNGKIIPGVSVYSGPGLKKD 325 (732)
Q Consensus 250 ~~~~~~~~~a~~~-Gi~vV~aAGN~G~~~~---~~~~~~p~v~tVga~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~~~ 325 (732)
..+...+..+.++ |+++|+|+||++.... ..++..+++++||+...+.
T Consensus 118 ~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~---------------------------- 169 (241)
T cd00306 118 SALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG---------------------------- 169 (241)
T ss_pred HHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC----------------------------
Confidence 5677777788887 9999999999998765 4667788888888743211
Q ss_pred ceEEEEEcCCCCCCCCCccccCCCCCCCCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCCCccccccCCccc
Q 040458 326 QMYSLVYAGSESGDGYSASLCLEGSLDPAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFDGEGLVADCHVLP 405 (732)
Q Consensus 326 ~~~~lv~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p 405 (732)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEccccHHHHHHHHHhcCCCCCCceEEEEeceeEeccCCCCccc-cccCCCCCCCCCCCCCCcEEeCCCcEEecCCCC
Q 040458 406 ATSVGAASGDEIRKYIMSAEKSKSPATATIVFKGTRVNVRPAPVVA-SFSARGPNPETPEILKPDVIAPGLNILAAWPDK 484 (732)
Q Consensus 406 ~~~v~~~~g~~l~~~~~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a-~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~ 484 (732)
... .++++| .|||+.|||.++.......
T Consensus 170 -------------------------------------------~~~~~~~~~~--------~~~~~~apg~~~~~~~~~~ 198 (241)
T cd00306 170 -------------------------------------------TPASPSSNGG--------AGVDIAAPGGDILSSPTTG 198 (241)
T ss_pred -------------------------------------------CccCCcCCCC--------CCceEEeCcCCccCcccCC
Confidence 111 234443 4569999999998852211
Q ss_pred CCCCCCCCCCCccceeeecCcccchhHHHHHHHHHHhhCCCCCHHHHHHHHHhh
Q 040458 485 VGPSGIPTDKRKTEFNILSGTSMACPHVSGLAALLKAAHPDWSPAAIRSALMTT 538 (732)
Q Consensus 485 ~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~sp~~ik~~L~~T 538 (732)
. ..|..++|||||||+|||++||++|++|++++.++|++|++|
T Consensus 199 ~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 199 G-----------GGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred C-----------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 1 279999999999999999999999999999999999999875
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=7.4e-20 Score=208.16 Aligned_cols=77 Identities=48% Similarity=0.729 Sum_probs=64.7
Q ss_pred CccccccCCCCCCCCCCCCCCcEEeCCCcEEe-----cCCCCCCCCCCCCCCCccceeeecCcccchhHHHHHHHHHHhh
Q 040458 448 PVVASFSARGPNPETPEILKPDVIAPGLNILA-----AWPDKVGPSGIPTDKRKTEFNILSGTSMACPHVSGLAALLKAA 522 (732)
Q Consensus 448 ~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~s-----a~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~ 522 (732)
+.++.||++|+.. ..|++|||.+|.+ ++++.. ..|..++||||++|||+|++||+++.
T Consensus 316 ~~~~~~s~~g~~~------~~~~~apg~~i~~~~~~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~ 378 (508)
T COG1404 316 DTVASFSNDGSPT------GVDIAAPGVNILSLSAVNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSA 378 (508)
T ss_pred CccccccccCCCC------CcceeCCCccccccccceeeeCCc-----------cceEeeccccccccHHHHHHHHHHcc
Confidence 4678899999852 1299999999998 444431 14999999999999999999999999
Q ss_pred CC-CCCHHHHHHHHHhhccc
Q 040458 523 HP-DWSPAAIRSALMTTAYT 541 (732)
Q Consensus 523 ~p-~~sp~~ik~~L~~TA~~ 541 (732)
+| .+++.+++..+.+++..
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~ 398 (508)
T COG1404 379 NPNELTPAQVRNLIVTTAGL 398 (508)
T ss_pred CcccCCHHHHHHHHhhcccc
Confidence 99 89999999998888874
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.4e-20 Score=188.99 Aligned_cols=96 Identities=17% Similarity=0.146 Sum_probs=65.1
Q ss_pred ceeeecCcccchhHHHHHHHHHHhhCCCCCHHHHHHHHHhhcccccCCC-Cc-c-ccCCCCCCCCCCCCCCCcccccccC
Q 040458 498 EFNILSGTSMACPHVSGLAALLKAAHPDWSPAAIRSALMTTAYTVDNRG-ET-M-IDESTGNTSTALDFGAGHVHPQKAM 574 (732)
Q Consensus 498 ~y~~~sGTSMAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~~~~-~~-~-~~~~~~~~~~~~~~G~G~vd~~~A~ 574 (732)
+....||||.|+|-.||+.||-++++|.++..+++.+-.-|++...... .- . ..........+.-+|+|.+|+.+-+
T Consensus 377 ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf~w~mngvglefnhlfgfgvldagamv 456 (629)
T KOG3526|consen 377 CTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNGVGLEFNHLFGFGVLDAGAMV 456 (629)
T ss_pred eecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceEEEeccccceeeecccccccccHHHHH
Confidence 6678899999999999999999999999999999988777766533211 00 0 0000112234557999999998776
Q ss_pred CCCccccCCchhhhhhhhccCC
Q 040458 575 NPGLIYDLTSYDYVNFLCNSNY 596 (732)
Q Consensus 575 ~~~lv~d~~~~dy~~~lc~~~~ 596 (732)
....-+...+.- |-|.-|.
T Consensus 457 ~lak~wktvppr---yhc~ag~ 475 (629)
T KOG3526|consen 457 MLAKAWKTVPPR---YHCTAGL 475 (629)
T ss_pred HHHHHhccCCCc---eeecccc
Confidence 644444444443 3466653
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.37 E-value=1.8e-12 Score=141.34 Aligned_cols=71 Identities=30% Similarity=0.431 Sum_probs=55.4
Q ss_pred cccC---CCeEEEecCCCCCCCC---cccHHHHHHHhhhcCCceEEEecCCCCCCCC-----------cccccCCCceee
Q 040458 228 AVSD---GVDVVSLSVGGVVVPY---FLDAIAIAAFGASDHGVFVSASAGNGGPGGL-----------TVTNVAPWVTTV 290 (732)
Q Consensus 228 Ai~d---gvdVInlSlG~~~~~~---~~~~~~~~~~~a~~~Gi~vV~aAGN~G~~~~-----------~~~~~~p~v~tV 290 (732)
++.+ +++|||+|||...... +.+.+..++.+|..+||.||+|+||+|.... ..++..|||++|
T Consensus 112 ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~GitvvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sV 191 (361)
T cd04056 112 AVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAV 191 (361)
T ss_pred HHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeee
Confidence 5555 9999999999863321 2356777888889999999999999997653 345789999999
Q ss_pred cCCCcCcc
Q 040458 291 GAGTIDRD 298 (732)
Q Consensus 291 ga~~~~~~ 298 (732)
|+.+....
T Consensus 192 Ggt~~~~~ 199 (361)
T cd04056 192 GGTTLYTG 199 (361)
T ss_pred ecccccCC
Confidence 99876543
No 44
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.26 E-value=3.9e-11 Score=113.14 Aligned_cols=116 Identities=27% Similarity=0.351 Sum_probs=90.7
Q ss_pred CceEEEEEcCCCCCCCCCccccCCCCCCCCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCCCcccccc-CCc
Q 040458 325 DQMYSLVYAGSESGDGYSASLCLEGSLDPAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFDGEGLVAD-CHV 403 (732)
Q Consensus 325 ~~~~~lv~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~-~~~ 403 (732)
..+.+++|.+. |....+...+++|||+||+||.|.+.+|..+++++||.++|++|+.......... ...
T Consensus 25 ~~~~~lv~~g~----------g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~ 94 (143)
T cd02133 25 GKTYELVDAGL----------GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVF 94 (143)
T ss_pred CcEEEEEEccC----------CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCe
Confidence 46788998665 3344455568999999999999999999999999999999999887643222211 246
Q ss_pred ccEEEEccccHHHHHHHHHhcCCCCCCceEEEEeceeEeccCCCCccccccCCCCC
Q 040458 404 LPATSVGAASGDEIRKYIMSAEKSKSPATATIVFKGTRVNVRPAPVVASFSARGPN 459 (732)
Q Consensus 404 ~p~~~v~~~~g~~l~~~~~~~~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSs~Gp~ 459 (732)
+|++.|+.++|..|.+++++ .++|.+..+.. ..+++.++.||||||+
T Consensus 95 iP~v~Is~~dG~~L~~~l~~--------~~~i~~~~~~~-~~~~p~va~fSsrgp~ 141 (143)
T cd02133 95 IPVVFISKEDGEALKAALES--------SKKLTFNTKKE-KATNPDLADFSSRGPW 141 (143)
T ss_pred EeEEEecHHHHHHHHHHHhC--------CCeEEEEeccc-cccCCccccccCcCCC
Confidence 89999999999999999975 24555555544 4577889999999997
No 45
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.25 E-value=6.1e-11 Score=109.40 Aligned_cols=119 Identities=56% Similarity=0.850 Sum_probs=96.0
Q ss_pred EEcCCCeEEeeeeeecCCCCCCCceEEEEEcCCCCCCCCCccccCCCCCCCCCccceEEEEecCCC-CcchhhHHHHHcC
Q 040458 303 VHLGNGKIIPGVSVYSGPGLKKDQMYSLVYAGSESGDGYSASLCLEGSLDPAFVRGKIVVCDRGIN-SRPAKGEVVKKAG 381 (732)
Q Consensus 303 ~~~~~g~~~~~~s~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~-~~~~~~~~~~~~G 381 (732)
++++||+++.|++++.... ..+++++.... ........|.+..++..+++||||+|+++.| .+.++..+++++|
T Consensus 2 i~LGng~~i~G~sl~~~~~----~~~~~~~~~~~-~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~G 76 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL----KTYPLVYKSAN-SGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAG 76 (126)
T ss_pred EEeCCCCEEEEEEccCCCC----CccceEeccCc-CCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcC
Confidence 6789999999999996442 35667663332 1334557899888888899999999999999 8899999999999
Q ss_pred ceEEEEEcCCCCCccccccCCcccEEEEccccHHHHHHHHHhcCC
Q 040458 382 GVGMILANGVFDGEGLVADCHVLPATSVGAASGDEIRKYIMSAEK 426 (732)
Q Consensus 382 a~g~i~~n~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~ 426 (732)
|.|+|++++.............+|.+.|+.++|..|++|++++..
T Consensus 77 A~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~ 121 (126)
T cd02120 77 GAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSN 121 (126)
T ss_pred CcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCC
Confidence 999999988765433333346899999999999999999998765
No 46
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.96 E-value=1.2e-09 Score=92.60 Aligned_cols=74 Identities=41% Similarity=0.627 Sum_probs=57.6
Q ss_pred eEEEEeCCCCCCCC-CcchHHHHHHhhc-------cCCCcEEEEecceeeEEEEEcCHHHHHHHhCCCCeEEEEeceeee
Q 040458 34 TFIIKVQYDAKPSI-FPTHKHWYESSLS-------SASATLLHTYDTVFHGFSAKLTPSEALRLKTLPHVLAVFSEQVRH 105 (732)
Q Consensus 34 ~yIV~l~~~~~~~~-~~~~~~~~~~~~~-------~~~~~v~~~y~~~~ng~s~~~~~~~~~~L~~~p~V~~V~~~~~~~ 105 (732)
+|||.|++...... ...+.+|+.+.+. ....++.+.|+..||||+++++++++++|+++|+|++|+||+.++
T Consensus 1 ~YIV~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~ 80 (82)
T PF05922_consen 1 RYIVVFKDDASAASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVS 80 (82)
T ss_dssp EEEEEE-TTSTHHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEE
T ss_pred CEEEEECCCCCcchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEe
Confidence 69999999876554 5667777775433 235899999999999999999999999999999999999999988
Q ss_pred cc
Q 040458 106 LH 107 (732)
Q Consensus 106 ~~ 107 (732)
++
T Consensus 81 l~ 82 (82)
T PF05922_consen 81 LH 82 (82)
T ss_dssp E-
T ss_pred cC
Confidence 64
No 47
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.71 E-value=6.6e-08 Score=88.54 Aligned_cols=96 Identities=26% Similarity=0.279 Sum_probs=75.8
Q ss_pred ceEEEEEcCCCCCCCCCccccCCCCCCCCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCCCc---cccc--c
Q 040458 326 QMYSLVYAGSESGDGYSASLCLEGSLDPAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFDGE---GLVA--D 400 (732)
Q Consensus 326 ~~~~lv~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~---~~~~--~ 400 (732)
-.-++++... ...+.|.+..+...+++|||+||+||.|.+.+|..+++++||.++|++|+..... .... .
T Consensus 17 i~~~lv~~~~-----~~~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~ 91 (122)
T cd04816 17 VTAPLVPLDP-----ERPAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNI 91 (122)
T ss_pred cEEEEEEcCC-----CCccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCC
Confidence 3456666432 2357899888777889999999999999999999999999999999998776321 1111 3
Q ss_pred CCcccEEEEccccHHHHHHHHHhcCC
Q 040458 401 CHVLPATSVGAASGDEIRKYIMSAEK 426 (732)
Q Consensus 401 ~~~~p~~~v~~~~g~~l~~~~~~~~~ 426 (732)
...+|.++|+..+|+.|+.++..+.+
T Consensus 92 ~~~iP~~~Is~~~G~~l~~~l~~g~~ 117 (122)
T cd04816 92 DLKVPVGVITKAAGAALRRRLGAGET 117 (122)
T ss_pred CCeeeEEEEcHHHHHHHHHHHcCCCE
Confidence 35699999999999999999987743
No 48
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.70 E-value=9e-08 Score=86.12 Aligned_cols=92 Identities=18% Similarity=0.206 Sum_probs=73.8
Q ss_pred CceEEEEEcCCCCCCCCCccccCCCCCCCCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCCCc--ccc--cc
Q 040458 325 DQMYSLVYAGSESGDGYSASLCLEGSLDPAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFDGE--GLV--AD 400 (732)
Q Consensus 325 ~~~~~lv~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~--~~~--~~ 400 (732)
...+|++... ....|....+.+.+++|||+|++||.|.|.+|..+++++||.++|++|+..... ... ..
T Consensus 19 ~~~~~~~~~~-------~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~ 91 (120)
T cd02129 19 ATLLPLRNLT-------SSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYE 91 (120)
T ss_pred CcceeeecCC-------CcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCc
Confidence 4556776533 357899888877889999999999999999999999999999999999876311 111 13
Q ss_pred CCcccEEEEccccHHHHHHHHHh
Q 040458 401 CHVLPATSVGAASGDEIRKYIMS 423 (732)
Q Consensus 401 ~~~~p~~~v~~~~g~~l~~~~~~ 423 (732)
...+|+++|+.++|+.|.+.+..
T Consensus 92 ~v~IP~v~Is~~dG~~i~~~l~~ 114 (120)
T cd02129 92 KIDIPVALLSYKDMLDIQQTFGD 114 (120)
T ss_pred CCcccEEEEeHHHHHHHHHHhcc
Confidence 45789999999999999888764
No 49
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.70 E-value=2.5e-08 Score=88.02 Aligned_cols=92 Identities=28% Similarity=0.328 Sum_probs=69.7
Q ss_pred ceEEEEEcCCCCCCCCCccccCCCCCCCCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCC----CCccccccC
Q 040458 326 QMYSLVYAGSESGDGYSASLCLEGSLDPAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVF----DGEGLVADC 401 (732)
Q Consensus 326 ~~~~lv~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~----~~~~~~~~~ 401 (732)
...+||.... ......|.+......+++||||||+||.|.+.+|..+++++||.|+|++|... .........
T Consensus 6 ~~~~lV~~~~----~~~~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~ 81 (101)
T PF02225_consen 6 VTGPLVPAGN----GIDEGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDP 81 (101)
T ss_dssp EEEEEEEETT----EEECCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTS
T ss_pred EEEEEEEecC----CCCcccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCC
Confidence 4566663222 22345567777778999999999999999999999999999999999999211 222334456
Q ss_pred CcccEEEEccccHHHHHHHH
Q 040458 402 HVLPATSVGAASGDEIRKYI 421 (732)
Q Consensus 402 ~~~p~~~v~~~~g~~l~~~~ 421 (732)
..+|+++|+..+|+.|++|+
T Consensus 82 ~~iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 82 IDIPVVFISYEDGEALLAYI 101 (101)
T ss_dssp TBSEEEEE-HHHHHHHHHHH
T ss_pred cEEEEEEeCHHHHhhhhccC
Confidence 88999999999999999985
No 50
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.63 E-value=1.5e-07 Score=85.23 Aligned_cols=83 Identities=24% Similarity=0.217 Sum_probs=67.9
Q ss_pred ccccCCCCCCCCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCCC-c-cc--cc----cCCcccEEEEccccH
Q 040458 343 ASLCLEGSLDPAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFDG-E-GL--VA----DCHVLPATSVGAASG 414 (732)
Q Consensus 343 ~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~-~~--~~----~~~~~p~~~v~~~~g 414 (732)
.+.|.+... ..+++|+|+|++||.|.|.+|..+++++||.++|++|+.... . .+ .. ....+|+++|+..+|
T Consensus 21 ~~gC~~~~~-~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELRN-IHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCCC-ccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 467987443 567999999999999999999999999999999999876542 1 11 11 234789999999999
Q ss_pred HHHHHHHHhcCC
Q 040458 415 DEIRKYIMSAEK 426 (732)
Q Consensus 415 ~~l~~~~~~~~~ 426 (732)
+.|+..+..+..
T Consensus 100 ~~L~~~l~~g~~ 111 (118)
T cd02127 100 YMIRKTLERLGL 111 (118)
T ss_pred HHHHHHHHcCCc
Confidence 999999998866
No 51
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.63 E-value=1.5e-07 Score=87.54 Aligned_cols=86 Identities=14% Similarity=0.083 Sum_probs=70.8
Q ss_pred CCccccCCCCC--CCCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCCCc-ccc---ccCCcccEEEEccccH
Q 040458 341 YSASLCLEGSL--DPAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFDGE-GLV---ADCHVLPATSVGAASG 414 (732)
Q Consensus 341 ~~~~~C~~~~~--~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~-~~~---~~~~~~p~~~v~~~~g 414 (732)
...+.|.+... ++.++.|+|+|++||.|.|.+|..+++++||.++|++|+..... .+. .....+|+++|+..+|
T Consensus 42 ~~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G 121 (138)
T cd02122 42 NDHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKG 121 (138)
T ss_pred CCcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHH
Confidence 34678998776 56789999999999999999999999999999999999886221 221 1224689999999999
Q ss_pred HHHHHHHHhcCC
Q 040458 415 DEIRKYIMSAEK 426 (732)
Q Consensus 415 ~~l~~~~~~~~~ 426 (732)
+.|+.++..+.+
T Consensus 122 ~~l~~~l~~G~~ 133 (138)
T cd02122 122 MEILELLERGIS 133 (138)
T ss_pred HHHHHHHHcCCc
Confidence 999999987754
No 52
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.57 E-value=2.7e-07 Score=84.04 Aligned_cols=85 Identities=25% Similarity=0.340 Sum_probs=69.4
Q ss_pred CCccccCCCCCCCCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCCCcccc----ccCCcccEEEEccccHHH
Q 040458 341 YSASLCLEGSLDPAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFDGEGLV----ADCHVLPATSVGAASGDE 416 (732)
Q Consensus 341 ~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~----~~~~~~p~~~v~~~~g~~ 416 (732)
...+.|.+..+. .+++|||+||+|+.|.+.+|..+++++||.++|++|+........ .....+|++.|+.++|..
T Consensus 25 ~~~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~ 103 (118)
T cd04818 25 SNTDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDA 103 (118)
T ss_pred CcccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHH
Confidence 345789888774 469999999999999999999999999999999998876422211 123469999999999999
Q ss_pred HHHHHHhcCC
Q 040458 417 IRKYIMSAEK 426 (732)
Q Consensus 417 l~~~~~~~~~ 426 (732)
|+.|++.+..
T Consensus 104 l~~~l~~g~~ 113 (118)
T cd04818 104 LKAALAAGGT 113 (118)
T ss_pred HHHHHhcCCc
Confidence 9999987644
No 53
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.48 E-value=2e-06 Score=79.11 Aligned_cols=95 Identities=15% Similarity=0.137 Sum_probs=71.2
Q ss_pred EEEEEcCCCCCCCCCccccCCCCCCCCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCCCccc-cccCCcccE
Q 040458 328 YSLVYAGSESGDGYSASLCLEGSLDPAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFDGEGL-VADCHVLPA 406 (732)
Q Consensus 328 ~~lv~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~-~~~~~~~p~ 406 (732)
+|++..... .....+.|.+.+.+..+++|||+|++||.|.|.+|..+++++||.++|++|+....... ..+...+|.
T Consensus 28 ~p~~~~~~~--~~~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~ 105 (129)
T cd02124 28 LPLWALSLD--TSVADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIA 105 (129)
T ss_pred ceEEEeecc--cCCCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceee
Confidence 666554433 22445789987666668999999999999999999999999999999999887542211 122334566
Q ss_pred EEEccccHHHHHHHHHhcC
Q 040458 407 TSVGAASGDEIRKYIMSAE 425 (732)
Q Consensus 407 ~~v~~~~g~~l~~~~~~~~ 425 (732)
+.+ .++|+.|++.++.+.
T Consensus 106 ~~~-~~~G~~l~~~l~~G~ 123 (129)
T cd02124 106 AVT-PEDGEAWIDALAAGS 123 (129)
T ss_pred EEe-HHHHHHHHHHHhcCC
Confidence 666 999999999998764
No 54
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.46 E-value=5.7e-07 Score=82.63 Aligned_cols=83 Identities=23% Similarity=0.263 Sum_probs=66.8
Q ss_pred ccccCCCCCCCCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCCC-----ccc--c-----ccCCcccEEEEc
Q 040458 343 ASLCLEGSLDPAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFDG-----EGL--V-----ADCHVLPATSVG 410 (732)
Q Consensus 343 ~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-----~~~--~-----~~~~~~p~~~v~ 410 (732)
.+.|.+... +.+++|||+|++||.|.|.+|..+++++||.++|++|+.... ..+ . .+...+|+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 467987554 557899999999999999999999999999999999876532 111 1 123578999999
Q ss_pred cccHHHHHHHHHhcCC
Q 040458 411 AASGDEIRKYIMSAEK 426 (732)
Q Consensus 411 ~~~g~~l~~~~~~~~~ 426 (732)
..+|+.|+..+..+..
T Consensus 106 ~~dG~~L~~~l~~~~~ 121 (126)
T cd02126 106 SKEGSKLLAAIKEHQN 121 (126)
T ss_pred HHHHHHHHHHHHhCCc
Confidence 9999999999987643
No 55
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.44 E-value=6.6e-07 Score=82.27 Aligned_cols=84 Identities=25% Similarity=0.274 Sum_probs=68.9
Q ss_pred ccccCCCC--CCCCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCCC-cccc-----ccCCcccEEEEccccH
Q 040458 343 ASLCLEGS--LDPAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFDG-EGLV-----ADCHVLPATSVGAASG 414 (732)
Q Consensus 343 ~~~C~~~~--~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~~~~-----~~~~~~p~~~v~~~~g 414 (732)
...|.+.. +...+++|||+||+|+.|.+.+|..+++++||.|+|++++.... .... .....+|++.|+.++|
T Consensus 30 ~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~g 109 (126)
T cd00538 30 LVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYADG 109 (126)
T ss_pred eEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHHH
Confidence 45687776 66788999999999999999999999999999999999887632 1111 1345799999999999
Q ss_pred HHHHHHHHhcCC
Q 040458 415 DEIRKYIMSAEK 426 (732)
Q Consensus 415 ~~l~~~~~~~~~ 426 (732)
..|+.++.++.+
T Consensus 110 ~~l~~~~~~~~~ 121 (126)
T cd00538 110 EALLSLLEAGKT 121 (126)
T ss_pred HHHHHHHhcCCc
Confidence 999999987643
No 56
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.43 E-value=8.3e-07 Score=81.29 Aligned_cols=92 Identities=22% Similarity=0.265 Sum_probs=71.4
Q ss_pred ceEEEEEcCCCCCCCCCccccCCCCCCCCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCCCcc---c-cccC
Q 040458 326 QMYSLVYAGSESGDGYSASLCLEGSLDPAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFDGEG---L-VADC 401 (732)
Q Consensus 326 ~~~~lv~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~---~-~~~~ 401 (732)
..-++++.. ...|.+..+ +.+++|||+|++||.|.+.+|..+++++||.++|++|+...+.. . ..+.
T Consensus 22 ~~g~lv~~~--------~~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~ 92 (122)
T cd02130 22 VTGPLVVVP--------NLGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSG 92 (122)
T ss_pred cEEEEEEeC--------CCCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCC
Confidence 345666642 346876554 35799999999999999999999999999999999988742211 1 1124
Q ss_pred CcccEEEEccccHHHHHHHHHhcCC
Q 040458 402 HVLPATSVGAASGDEIRKYIMSAEK 426 (732)
Q Consensus 402 ~~~p~~~v~~~~g~~l~~~~~~~~~ 426 (732)
..+|.+.|+.++|+.|+..++++.+
T Consensus 93 ~~Ip~v~Is~~~G~~L~~~l~~g~~ 117 (122)
T cd02130 93 PYVPTVGISQEDGKALVAALANGGE 117 (122)
T ss_pred CEeeEEEecHHHHHHHHHHHhcCCc
Confidence 5799999999999999999988754
No 57
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.41 E-value=9.8e-07 Score=82.55 Aligned_cols=81 Identities=17% Similarity=0.315 Sum_probs=66.2
Q ss_pred ccccCCCCCCCCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCCCcccc------ccCCcccEEEEccccHHH
Q 040458 343 ASLCLEGSLDPAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFDGEGLV------ADCHVLPATSVGAASGDE 416 (732)
Q Consensus 343 ~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~------~~~~~~p~~~v~~~~g~~ 416 (732)
.+.|.+.. .+++|||+|++||.|.|.+|..+++++||.++|++|+........ .....+|+++|+..+|+.
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 46798764 478999999999999999999999999999999998765321111 113579999999999999
Q ss_pred HHHHHHhcCC
Q 040458 417 IRKYIMSAEK 426 (732)
Q Consensus 417 l~~~~~~~~~ 426 (732)
|+..+..+..
T Consensus 125 L~~~l~~g~~ 134 (139)
T cd02132 125 LNKSLDQGKK 134 (139)
T ss_pred HHHHHHcCCc
Confidence 9999987744
No 58
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.40 E-value=8.5e-07 Score=80.10 Aligned_cols=80 Identities=16% Similarity=0.151 Sum_probs=65.2
Q ss_pred CccccCCCCCCCCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCCCcc--cc----ccCCcccEEEEccccHH
Q 040458 342 SASLCLEGSLDPAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFDGEG--LV----ADCHVLPATSVGAASGD 415 (732)
Q Consensus 342 ~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~--~~----~~~~~~p~~~v~~~~g~ 415 (732)
..+.|.+. +..+++|||+|++||.|.|.+|..+++++||.++|++|+...... .. .....+|+++++.++++
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~ 103 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYH 103 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHH
Confidence 35789766 557899999999999999999999999999999999987764211 11 22347899999999999
Q ss_pred HHHHHHHh
Q 040458 416 EIRKYIMS 423 (732)
Q Consensus 416 ~l~~~~~~ 423 (732)
.|+.++..
T Consensus 104 ~L~~l~~~ 111 (117)
T cd04813 104 LLSSLLPK 111 (117)
T ss_pred HHHHhccc
Confidence 99988754
No 59
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.40 E-value=1.9e-06 Score=79.04 Aligned_cols=84 Identities=23% Similarity=0.251 Sum_probs=66.0
Q ss_pred ccccCCCCCC--CC----CccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCCCc-cc----------cccCCccc
Q 040458 343 ASLCLEGSLD--PA----FVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFDGE-GL----------VADCHVLP 405 (732)
Q Consensus 343 ~~~C~~~~~~--~~----~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~-~~----------~~~~~~~p 405 (732)
.+.|.+.... +. ...++|+|++||.|.|.+|..+++++||.++|++|+..... .. ......+|
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP 101 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIP 101 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEe
Confidence 5678876543 22 37789999999999999999999999999999999865321 11 11223689
Q ss_pred EEEEccccHHHHHHHHHhcCC
Q 040458 406 ATSVGAASGDEIRKYIMSAEK 426 (732)
Q Consensus 406 ~~~v~~~~g~~l~~~~~~~~~ 426 (732)
+++|+..+|+.|+..+..+..
T Consensus 102 ~v~Is~~~G~~L~~~l~~g~~ 122 (127)
T cd02125 102 SALITKAFGEKLKKAISNGEM 122 (127)
T ss_pred EEEECHHHHHHHHHHHhcCCe
Confidence 999999999999999987744
No 60
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.37 E-value=5.5e-06 Score=74.63 Aligned_cols=84 Identities=21% Similarity=0.383 Sum_probs=58.0
Q ss_pred eeEEEEEEEEecCCCCceEEEEEeC--------CCCc-----------EEEEecceeEEecCCcEEEEEEEEEEcccccC
Q 040458 640 MSTHFIRTVTNVGDPNSAYKVTIRP--------PSGM-----------TVTVQPEKLVFRRVGQKLNFLVRVEATAVKLS 700 (732)
Q Consensus 640 ~~~~~~rtvtn~~~~~~ty~~~v~~--------~~g~-----------~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~ 700 (732)
...+++.||+|.|+...+|+++... ..|. .+...|.++++ ++||+++++|+|+.+.. ..
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~~p~~-~~ 85 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTITPPSG-LD 85 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE--GG-GH
T ss_pred CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEEehhc-CC
Confidence 3588899999999999999988761 1111 57777888998 89999999999999541 11
Q ss_pred CCCCCceEEEEEEEC-Ccc-EEEeEEE
Q 040458 701 PGSSSMKSGKIVWSD-GKH-NVTSPIV 725 (732)
Q Consensus 701 ~~~~~~~~G~i~~~~-~~~-~vr~P~~ 725 (732)
...+.+++|+|.+++ ..+ .+++||+
T Consensus 86 ~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 86 ASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp HTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred cccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 123789999999987 444 8999996
No 61
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.33 E-value=1.3e-06 Score=80.94 Aligned_cols=73 Identities=25% Similarity=0.264 Sum_probs=59.8
Q ss_pred CCCCccceEEEEecCCCC-----cchhhHHHHHcCceEEEEEcCCCCCc----cccc--cCCcccEEEEccccHHHHHHH
Q 040458 352 DPAFVRGKIVVCDRGINS-----RPAKGEVVKKAGGVGMILANGVFDGE----GLVA--DCHVLPATSVGAASGDEIRKY 420 (732)
Q Consensus 352 ~~~~~~gkivl~~~g~~~-----~~~~~~~~~~~Ga~g~i~~n~~~~~~----~~~~--~~~~~p~~~v~~~~g~~l~~~ 420 (732)
...+++|||+|++||.|. |.+|..+++++||.++|++|+..... .+.. ....+|++.|+.++|+.|+..
T Consensus 51 ~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~~ 130 (139)
T cd04817 51 ICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLAA 130 (139)
T ss_pred cCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHHH
Confidence 345799999999999999 99999999999999999999973211 1111 135899999999999999998
Q ss_pred HHhc
Q 040458 421 IMSA 424 (732)
Q Consensus 421 ~~~~ 424 (732)
+...
T Consensus 131 l~~~ 134 (139)
T cd04817 131 LGQS 134 (139)
T ss_pred hcCC
Confidence 8543
No 62
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.33 E-value=1.9e-06 Score=81.96 Aligned_cols=82 Identities=22% Similarity=0.233 Sum_probs=67.5
Q ss_pred ccccCCCCCCC---CCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCCCc-cccc-----cCCcccEEEEcccc
Q 040458 343 ASLCLEGSLDP---AFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFDGE-GLVA-----DCHVLPATSVGAAS 413 (732)
Q Consensus 343 ~~~C~~~~~~~---~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~-~~~~-----~~~~~p~~~v~~~~ 413 (732)
.++|.+....+ ..+.|+|+|++||.|.|.+|..+++++||.++|++|+..... .... ....+|+++|+..+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 56798766544 789999999999999999999999999999999999875321 1111 13589999999999
Q ss_pred HHHHHHHHHhc
Q 040458 414 GDEIRKYIMSA 424 (732)
Q Consensus 414 g~~l~~~~~~~ 424 (732)
|+.|+.++...
T Consensus 130 g~~L~~~l~~~ 140 (153)
T cd02123 130 GEILKKYASYE 140 (153)
T ss_pred HHHHHHHHhcC
Confidence 99999998765
No 63
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=98.03 E-value=2.4e-05 Score=72.12 Aligned_cols=91 Identities=23% Similarity=0.207 Sum_probs=70.0
Q ss_pred CceEEEEEcCCCCCCCCCccccCCCCCCCCCccceEEEEecCCC--CcchhhHHHHHcCceEEEEEcCCCCCccc-----
Q 040458 325 DQMYSLVYAGSESGDGYSASLCLEGSLDPAFVRGKIVVCDRGIN--SRPAKGEVVKKAGGVGMILANGVFDGEGL----- 397 (732)
Q Consensus 325 ~~~~~lv~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~--~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~----- 397 (732)
..+.++++.+.. .+..+...+++|||++++++.+ .+.+|..+++++||.|+|++|+.......
T Consensus 22 ~~~~~lV~~g~G----------~~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~ 91 (127)
T cd04819 22 EAKGEPVDAGYG----------LPKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEG 91 (127)
T ss_pred CeeEEEEEeCCC----------CHHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCccccccc
Confidence 457888887653 1222334679999999999999 88899999999999999999876542211
Q ss_pred c--ccCCcccEEEEccccHHHHHHHHHhcC
Q 040458 398 V--ADCHVLPATSVGAASGDEIRKYIMSAE 425 (732)
Q Consensus 398 ~--~~~~~~p~~~v~~~~g~~l~~~~~~~~ 425 (732)
. .....+|++.|+.++|+.|...++.+.
T Consensus 92 ~~~~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 92 TEDGPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred ccCCCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 1 223579999999999999999998653
No 64
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00053 Score=76.00 Aligned_cols=77 Identities=18% Similarity=0.155 Sum_probs=57.1
Q ss_pred ceeeecCcccchhHHHHHHHHHHhhCCCCCHHHHHHHHHhhcccccCCCCccccCCCCCCCCCCCCCCCcccccccCC
Q 040458 498 EFNILSGTSMACPHVSGLAALLKAAHPDWSPAAIRSALMTTAYTVDNRGETMIDESTGNTSTALDFGAGHVHPQKAMN 575 (732)
Q Consensus 498 ~y~~~sGTSMAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~ 575 (732)
.-.--.|||.++|..||..+|.++++|.++..++..+...++...............+. .....+|+|++|..+-+.
T Consensus 248 c~e~h~g~s~~~~~~a~~~~~~~~~~~~ls~~d~~~l~~~~~~~~~~~~~~~~~n~~g~-~~~h~~g~~~~~~~~~~~ 324 (431)
T KOG3525|consen 248 CTEGHTGTSASAPLAAGIIALALEANPCLSWRDSQHLIVLTSRPKVLLKGKWKSNGAGG-LVSHLYGFGLLDAKALVS 324 (431)
T ss_pred ccccCCCCcCccchhcchhhhhhccCccccccchhhhhhhhcchhhccCCCceEecCCc-eeeeeecccccCcchhhh
Confidence 34456799999999999999999999999999999999999887543333222211111 122379999999877665
No 65
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0017 Score=77.97 Aligned_cols=43 Identities=30% Similarity=0.448 Sum_probs=33.4
Q ss_pred cHHHHHHHhhhcCCceEEEecCCCCCCCCc--------ccccCCCceeecC
Q 040458 250 DAIAIAAFGASDHGVFVSASAGNGGPGGLT--------VTNVAPWVTTVGA 292 (732)
Q Consensus 250 ~~~~~~~~~a~~~Gi~vV~aAGN~G~~~~~--------~~~~~p~v~tVga 292 (732)
+....-...|..+||.+++|+|-+|....+ .++.+||+++||-
T Consensus 345 ~~~d~l~~qasaeGITi~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 345 DLMDLLYEQASAEGITIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred HHHHHHHHHhhccceEEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 445555667889999999999999866542 3467899999986
No 66
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=97.23 E-value=0.0012 Score=61.41 Aligned_cols=75 Identities=17% Similarity=0.244 Sum_probs=59.2
Q ss_pred CCCCccceEEEEecCCC------Ccchh-------hHHHHHcCceEEEEEcCCCC-------Ccccc-ccCCcccEEEEc
Q 040458 352 DPAFVRGKIVVCDRGIN------SRPAK-------GEVVKKAGGVGMILANGVFD-------GEGLV-ADCHVLPATSVG 410 (732)
Q Consensus 352 ~~~~~~gkivl~~~g~~------~~~~~-------~~~~~~~Ga~g~i~~n~~~~-------~~~~~-~~~~~~p~~~v~ 410 (732)
...+++|||+++.++.| .+..| ...++++||.++|++|.... +.... .....+|++.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 35689999999999999 88887 69999999999999985421 11111 223469999999
Q ss_pred cccHHHHHHHHHhcCC
Q 040458 411 AASGDEIRKYIMSAEK 426 (732)
Q Consensus 411 ~~~g~~l~~~~~~~~~ 426 (732)
.+++..|...++.+..
T Consensus 114 ~ed~~~L~r~l~~g~~ 129 (134)
T cd04815 114 VEDADMLERLAARGKP 129 (134)
T ss_pred hhcHHHHHHHHhCCCC
Confidence 9999999999887643
No 67
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=97.00 E-value=0.002 Score=62.42 Aligned_cols=71 Identities=21% Similarity=0.221 Sum_probs=55.9
Q ss_pred CCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCCCcc------------------c-----------c--c--
Q 040458 353 PAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFDGEG------------------L-----------V--A-- 399 (732)
Q Consensus 353 ~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~------------------~-----------~--~-- 399 (732)
..+++|||+|+++|.|.+.+|..+|+++||+|+|++++..+... + . .
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 46799999999999999999999999999999999988521100 0 0 0
Q ss_pred -cCCcccEEEEccccHHHHHHHHHh
Q 040458 400 -DCHVLPATSVGAASGDEIRKYIMS 423 (732)
Q Consensus 400 -~~~~~p~~~v~~~~g~~l~~~~~~ 423 (732)
....||++-|+..++..|+..+.-
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCC
Confidence 113588899999999999998753
No 68
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=96.85 E-value=0.0024 Score=59.44 Aligned_cols=64 Identities=22% Similarity=0.188 Sum_probs=52.5
Q ss_pred CceEEEEEcCCCCCCCCCccccCCCCCCCCCccceEEEEecCCC------------------CcchhhHHHHHcCceEEE
Q 040458 325 DQMYSLVYAGSESGDGYSASLCLEGSLDPAFVRGKIVVCDRGIN------------------SRPAKGEVVKKAGGVGMI 386 (732)
Q Consensus 325 ~~~~~lv~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~------------------~~~~~~~~~~~~Ga~g~i 386 (732)
....++|+.+.+ .....|....+...+++||||++.+|.| .+..|..+++++||.|+|
T Consensus 19 ~~~aelVfvGyG----i~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvI 94 (142)
T cd04814 19 IKDAPLVFVGYG----IKAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVL 94 (142)
T ss_pred ccceeeEEecCC----cCCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEE
Confidence 356888888764 2345688888888899999999999877 356799999999999999
Q ss_pred EEcCCC
Q 040458 387 LANGVF 392 (732)
Q Consensus 387 ~~n~~~ 392 (732)
++++..
T Consensus 95 ii~~~~ 100 (142)
T cd04814 95 IVHELA 100 (142)
T ss_pred EEeCCC
Confidence 999865
No 69
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.65 E-value=0.0047 Score=57.16 Aligned_cols=65 Identities=28% Similarity=0.246 Sum_probs=52.5
Q ss_pred CceEEEEEcCCCCCCCCCccccCCCCCCCCCccceEEEEecCCCC------------cchhhHHHHHcCceEEEEEcCCC
Q 040458 325 DQMYSLVYAGSESGDGYSASLCLEGSLDPAFVRGKIVVCDRGINS------------RPAKGEVVKKAGGVGMILANGVF 392 (732)
Q Consensus 325 ~~~~~lv~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~------------~~~~~~~~~~~Ga~g~i~~n~~~ 392 (732)
..+.++||.+.. .....|....+...+++|||||+.++.|. +..|..+++++||.|+|++++..
T Consensus 21 ~v~gelVfvGyG----~~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 21 SVEAPLVFVGYG----LVAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred CceEeEEEecCC----cCccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 456788888764 23456877777778999999999998873 55799999999999999999865
Q ss_pred C
Q 040458 393 D 393 (732)
Q Consensus 393 ~ 393 (732)
.
T Consensus 97 ~ 97 (137)
T cd04820 97 S 97 (137)
T ss_pred c
Confidence 3
No 70
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=96.50 E-value=0.007 Score=65.59 Aligned_cols=73 Identities=21% Similarity=0.310 Sum_probs=60.1
Q ss_pred CCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCC------CccccccCCcccEEEEccccHHHHHHHHHhcC
Q 040458 353 PAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFD------GEGLVADCHVLPATSVGAASGDEIRKYIMSAE 425 (732)
Q Consensus 353 ~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~------~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~ 425 (732)
..++++|++++.||.|.|.+|+..++++||.++++.|+..+ ++........||.+.+++++++.+.....++.
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~ 169 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSND 169 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCC
Confidence 36789999999999999999999999999999999999552 22223345789999999999999987555443
No 71
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.45 E-value=0.0078 Score=56.77 Aligned_cols=65 Identities=23% Similarity=0.214 Sum_probs=51.4
Q ss_pred CceEEEEEcCCCCCCCCCccccCCCCCCCCCccceEEEEecCC------------------CCcchhhHHHHHcCceEEE
Q 040458 325 DQMYSLVYAGSESGDGYSASLCLEGSLDPAFVRGKIVVCDRGI------------------NSRPAKGEVVKKAGGVGMI 386 (732)
Q Consensus 325 ~~~~~lv~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~------------------~~~~~~~~~~~~~Ga~g~i 386 (732)
..+-++||.+.+ .....|....+...+++|||||+.++. |.+..|..+++++||.|+|
T Consensus 19 ~vtg~lVfvGyG----i~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVI 94 (151)
T cd04822 19 AVTAPVVFAGYG----ITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVI 94 (151)
T ss_pred CceEeEEEecCC----cCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEE
Confidence 346788887764 234567777777789999999998763 5567899999999999999
Q ss_pred EEcCCCC
Q 040458 387 LANGVFD 393 (732)
Q Consensus 387 ~~n~~~~ 393 (732)
++++...
T Consensus 95 v~~d~~~ 101 (151)
T cd04822 95 VVNGPNS 101 (151)
T ss_pred EEeCCcc
Confidence 9998764
No 72
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=96.36 E-value=0.074 Score=46.70 Aligned_cols=94 Identities=15% Similarity=0.192 Sum_probs=67.6
Q ss_pred CCccCCCceEEEEeecCCcceeEEEEEEEEecCCCCceEEEEEeCCCCcEEEEecceeEEecCCcEEEEEEEEEEccccc
Q 040458 620 VGNLNYPSLSAVFQQYGKHKMSTHFIRTVTNVGDPNSAYKVTIRPPSGMTVTVQPEKLVFRRVGQKLNFLVRVEATAVKL 699 (732)
Q Consensus 620 ~~~ln~psi~~~~~~~~~~~~~~~~~rtvtn~~~~~~ty~~~v~~~~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~ 699 (732)
+..|++..+.+. ...+.+.+|+|.|..+..|++.......-.++++|..-.+ ++|++.++.|+|....
T Consensus 8 P~~ldFG~v~~g--------~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~--- 75 (102)
T PF14874_consen 8 PKELDFGNVFVG--------QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTK--- 75 (102)
T ss_pred CCEEEeeEEccC--------CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCC---
Confidence 446777655432 2456677899999999999998754334567777776555 8999999999999543
Q ss_pred CCCCCCceEEEEEEECCccEEEeEEEEEe
Q 040458 700 SPGSSSMKSGKIVWSDGKHNVTSPIVVTM 728 (732)
Q Consensus 700 ~~~~~~~~~G~i~~~~~~~~vr~P~~~~~ 728 (732)
+ -+.+.+.|...-.+..+.+|+-+..
T Consensus 76 -~--~g~~~~~l~i~~e~~~~~i~v~a~~ 101 (102)
T PF14874_consen 76 -P--LGDYEGSLVITTEGGSFEIPVKAEV 101 (102)
T ss_pred -C--CceEEEEEEEEECCeEEEEEEEEEE
Confidence 2 2446888888766668888886653
No 73
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=95.48 E-value=0.02 Score=52.77 Aligned_cols=92 Identities=21% Similarity=0.159 Sum_probs=68.7
Q ss_pred ccccCCCCCCCCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCCCccc----------cccCCcccEEEEccc
Q 040458 343 ASLCLEGSLDPAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFDGEGL----------VADCHVLPATSVGAA 412 (732)
Q Consensus 343 ~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~----------~~~~~~~p~~~v~~~ 412 (732)
..+|..... .-...+.+.+++||.|+|..|..+++++||..+|+.++......+ ..+...+|+.++-..
T Consensus 74 p~aC~elrN-~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fllg~ 152 (193)
T KOG3920|consen 74 PHACEELRN-EIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLLGV 152 (193)
T ss_pred hhHHHHHhh-cccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEecc
Confidence 567876442 246778999999999999999999999999999998776543322 123468999999998
Q ss_pred cHHHHHHHHHhcCCCCCCceEEEEece
Q 040458 413 SGDEIRKYIMSAEKSKSPATATIVFKG 439 (732)
Q Consensus 413 ~g~~l~~~~~~~~~~~~~~~~~i~~~~ 439 (732)
+|-.++..++.-.. +.+.|..+.
T Consensus 153 ~Gy~ir~sL~r~~r----~ha~i~IPV 175 (193)
T KOG3920|consen 153 TGYYIRVSLKRYFR----DHAKIDIPV 175 (193)
T ss_pred ceEEEehhHHHhCC----ccEEEeccc
Confidence 88887777766655 555555443
No 74
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=95.43 E-value=0.023 Score=57.08 Aligned_cols=59 Identities=31% Similarity=0.287 Sum_probs=46.9
Q ss_pred CceEEEEEcCCCCCCCCCccccCCCCC-----CCCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCC
Q 040458 325 DQMYSLVYAGSESGDGYSASLCLEGSL-----DPAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFD 393 (732)
Q Consensus 325 ~~~~~lv~~~~~~~~~~~~~~C~~~~~-----~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 393 (732)
..+.++||++.. ....+ ...+++|||+|+++|.+.+..|..+++++||+|+|++++..+
T Consensus 44 ~v~g~lVyvnyG----------~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d 107 (220)
T cd02121 44 NVTAELVYANYG----------SPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPAD 107 (220)
T ss_pred CceEEEEEcCCC----------cHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCchh
Confidence 356788886653 32222 246899999999999998889999999999999999998754
No 75
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.38 E-value=0.074 Score=44.29 Aligned_cols=57 Identities=23% Similarity=0.323 Sum_probs=38.2
Q ss_pred eeEEEEEEEEecCCCC-ceEEEEEeCCCCcEEEEecceeEEecCCcEEEEEEEEEEcc
Q 040458 640 MSTHFIRTVTNVGDPN-SAYKVTIRPPSGMTVTVQPEKLVFRRVGQKLNFLVRVEATA 696 (732)
Q Consensus 640 ~~~~~~rtvtn~~~~~-~ty~~~v~~~~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~ 696 (732)
.+.+++.+|+|.|... ...++++..|+|-++...|..+.-.++||+++++++|+++.
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~ 62 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPA 62 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-T
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCC
Confidence 4678899999999765 46889999999999888888886558999999999999876
No 76
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=95.20 E-value=0.022 Score=53.10 Aligned_cols=40 Identities=23% Similarity=0.172 Sum_probs=37.4
Q ss_pred CCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCC
Q 040458 354 AFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFD 393 (732)
Q Consensus 354 ~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 393 (732)
.+++|||+|++.|...+-.|..++++.||.|+|++.+..+
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~d 76 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPCD 76 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChhh
Confidence 6799999999999999999999999999999999988754
No 77
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.69 E-value=0.16 Score=54.17 Aligned_cols=80 Identities=18% Similarity=0.063 Sum_probs=62.6
Q ss_pred cccCCCCC---CCCCccceEEEEecCCCCcchhhHHHHHcCceEEEEEcCCCCCccc----cccCCcccEEEEccccHHH
Q 040458 344 SLCLEGSL---DPAFVRGKIVVCDRGINSRPAKGEVVKKAGGVGMILANGVFDGEGL----VADCHVLPATSVGAASGDE 416 (732)
Q Consensus 344 ~~C~~~~~---~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~----~~~~~~~p~~~v~~~~g~~ 416 (732)
++|.+... ........++++.||+|+|.+|..+++++|..++|++|+....... ......++..+++...|+.
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~ 142 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGEL 142 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHH
Confidence 56776332 2355667899999999999999999999999999999987755332 2344678889999999999
Q ss_pred HHHHHHh
Q 040458 417 IRKYIMS 423 (732)
Q Consensus 417 l~~~~~~ 423 (732)
|..|...
T Consensus 143 l~~~~~~ 149 (348)
T KOG4628|consen 143 LSSYAGR 149 (348)
T ss_pred HHHhhcc
Confidence 9887543
No 78
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=91.71 E-value=2.7 Score=37.94 Aligned_cols=53 Identities=15% Similarity=0.246 Sum_probs=38.3
Q ss_pred EEEEEEEecCCCCceEEEEEeCCCCcEEEEecceeEEecCCcEEEEEEEEEEcc
Q 040458 643 HFIRTVTNVGDPNSAYKVTIRPPSGMTVTVQPEKLVFRRVGQKLNFLVRVEATA 696 (732)
Q Consensus 643 ~~~rtvtn~~~~~~ty~~~v~~~~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~ 696 (732)
..+.+|+|.++.+.+|++++..++|+++......+.+ ++|++..+.|.+.++.
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~ 86 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPP 86 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-G
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECH
Confidence 4567899999999999999999889999665578888 8999999999999986
No 79
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=90.42 E-value=0.72 Score=43.92 Aligned_cols=64 Identities=19% Similarity=0.058 Sum_probs=43.5
Q ss_pred CceEEEEEcCCCCCCCCCccccCCCCCCCCCccceEEEEecCCCCcc-------------------hhhHHHHHcCceEE
Q 040458 325 DQMYSLVYAGSESGDGYSASLCLEGSLDPAFVRGKIVVCDRGINSRP-------------------AKGEVVKKAGGVGM 385 (732)
Q Consensus 325 ~~~~~lv~~~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~-------------------~~~~~~~~~Ga~g~ 385 (732)
..+.++|+.+.+-.. ..-....+...|++||||++..+...+. .|...+++.||.|+
T Consensus 21 ~~~~elVFvGyGi~a----pe~~~dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gv 96 (157)
T cd04821 21 LKDSPLVFVGYGIVA----PEYGWDDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGA 96 (157)
T ss_pred cccCCEEEeccCccC----cccCcccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEE
Confidence 355677887765211 0112234556799999999997654222 38999999999999
Q ss_pred EEEcCCC
Q 040458 386 ILANGVF 392 (732)
Q Consensus 386 i~~n~~~ 392 (732)
|++....
T Consensus 97 i~v~~~~ 103 (157)
T cd04821 97 LIVHETE 103 (157)
T ss_pred EEEeCCC
Confidence 9997754
No 80
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=89.11 E-value=4.5 Score=36.81 Aligned_cols=70 Identities=16% Similarity=0.264 Sum_probs=50.6
Q ss_pred eeEEEEEEEEecCCCCceEEEEEeC----CCC--------------cE------EEEecceeEEecCCcEEEEEEEEEEc
Q 040458 640 MSTHFIRTVTNVGDPNSAYKVTIRP----PSG--------------MT------VTVQPEKLVFRRVGQKLNFLVRVEAT 695 (732)
Q Consensus 640 ~~~~~~rtvtn~~~~~~ty~~~v~~----~~g--------------~~------v~v~p~~l~~~~~~~~~~~~vt~~~~ 695 (732)
.+.+++.+|+|.++...+|.+++.. ..| +. +++ |..+++ +++|++.++++++.+
T Consensus 27 q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~sk~V~~~i~~P 104 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNESKTVTFTIKMP 104 (121)
T ss_pred CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCCEEEEEEEEEcC
Confidence 4788999999999999999988741 111 00 222 445677 899999999999987
Q ss_pred ccccCCCCCCceEEEEEEEC
Q 040458 696 AVKLSPGSSSMKSGKIVWSD 715 (732)
Q Consensus 696 ~~~~~~~~~~~~~G~i~~~~ 715 (732)
. ..- .+.+-|-|.+++
T Consensus 105 ~---~~f-~G~ilGGi~~~e 120 (121)
T PF06030_consen 105 K---KAF-DGIILGGIYFSE 120 (121)
T ss_pred C---CCc-CCEEEeeEEEEe
Confidence 6 333 566788887763
No 81
>COG1470 Predicted membrane protein [Function unknown]
Probab=86.49 E-value=2.5 Score=46.43 Aligned_cols=56 Identities=14% Similarity=0.260 Sum_probs=49.8
Q ss_pred eEEEEEEEEecCCCCce-EEEEEeCCCCcEEEEecceeEEecCCcEEEEEEEEEEcc
Q 040458 641 STHFIRTVTNVGDPNSA-YKVTIRPPSGMTVTVQPEKLVFRRVGQKLNFLVRVEATA 696 (732)
Q Consensus 641 ~~~~~rtvtn~~~~~~t-y~~~v~~~~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~ 696 (732)
..++...+.|.|+.+.| -++++..|.|-++.|.|.++--.++||.+++.+|++++.
T Consensus 398 e~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~ 454 (513)
T COG1470 398 EKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPE 454 (513)
T ss_pred cceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCC
Confidence 57788899999988764 679999999999999999886669999999999999987
No 82
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=80.43 E-value=1.2 Score=52.56 Aligned_cols=81 Identities=36% Similarity=0.427 Sum_probs=63.4
Q ss_pred CCCCcccchhhhhcc-----------------------------------------cccCCCeEEEecCCCCCC-CCccc
Q 040458 213 SDGHGTHTASIAAGS-----------------------------------------AVSDGVDVVSLSVGGVVV-PYFLD 250 (732)
Q Consensus 213 ~~gHGTHVAGi~ag~-----------------------------------------Ai~dgvdVInlSlG~~~~-~~~~~ 250 (732)
..-|||||||||+|+ .++..|||||||+|-... +....
T Consensus 309 Sg~HGTHVAgIa~anhpe~p~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~a~~pn~GR 388 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPETPELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGEDAHLPNSGR 388 (1304)
T ss_pred CCCCcceehhhhccCCCCCccccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCccCCCCCcch
Confidence 346999999999999 677899999999998643 33344
Q ss_pred HHHHHHHhhhcCCceEEEecCCCCCCCCcccc---cCCCceeecCC
Q 040458 251 AIAIAAFGASDHGVFVSASAGNGGPGGLTVTN---VAPWVTTVGAG 293 (732)
Q Consensus 251 ~~~~~~~~a~~~Gi~vV~aAGN~G~~~~~~~~---~~p~v~tVga~ 293 (732)
.++..-..+-+.|+++|+||||+||...+++. +...+|.|||.
T Consensus 389 viEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAY 434 (1304)
T KOG1114|consen 389 VIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAY 434 (1304)
T ss_pred HHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeee
Confidence 45544444457899999999999999887774 34589999985
No 83
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=78.03 E-value=18 Score=32.63 Aligned_cols=51 Identities=20% Similarity=0.122 Sum_probs=39.3
Q ss_pred EEEEEEEEecCCCCceEEEEEeC---CCC----cEEEEecceeEEecCCcEEEEEEEEEE
Q 040458 642 THFIRTVTNVGDPNSAYKVTIRP---PSG----MTVTVQPEKLVFRRVGQKLNFLVRVEA 694 (732)
Q Consensus 642 ~~~~rtvtn~~~~~~ty~~~v~~---~~g----~~v~v~p~~l~~~~~~~~~~~~vt~~~ 694 (732)
.+.+.+|+|.++.+..+.+.+.. ..+ -.+.|+|..+.+ ++|+++.++| +..
T Consensus 16 ~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~ 73 (122)
T PF00345_consen 16 RSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRG 73 (122)
T ss_dssp SEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EEC
T ss_pred CEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-Eec
Confidence 45567999999977777777764 111 257799999999 7999999999 663
No 84
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=75.10 E-value=13 Score=41.57 Aligned_cols=54 Identities=11% Similarity=0.252 Sum_probs=46.2
Q ss_pred EEEEEEEEecCCCCceEEEEEeCCCCcEEEEecceeEEecCCcEEEEEEEEEEcc
Q 040458 642 THFIRTVTNVGDPNSAYKVTIRPPSGMTVTVQPEKLVFRRVGQKLNFLVRVEATA 696 (732)
Q Consensus 642 ~~~~rtvtn~~~~~~ty~~~v~~~~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~ 696 (732)
-..+..+.|.++.+.+|+++++..++.++...++.+++ ++||+.++.|++..+.
T Consensus 348 N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 348 NTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRTPP 401 (434)
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEech
Confidence 34567889999999999999999999999876557787 8999999999998875
No 85
>COG1470 Predicted membrane protein [Function unknown]
Probab=72.33 E-value=21 Score=39.62 Aligned_cols=56 Identities=16% Similarity=0.363 Sum_probs=45.4
Q ss_pred eeEEEEEEEEecCCCCceEEEEEe-CCCCcEEEEecc-----eeEEecCCcEEEEEEEEEEcc
Q 040458 640 MSTHFIRTVTNVGDPNSAYKVTIR-PPSGMTVTVQPE-----KLVFRRVGQKLNFLVRVEATA 696 (732)
Q Consensus 640 ~~~~~~rtvtn~~~~~~ty~~~v~-~~~g~~v~v~p~-----~l~~~~~~~~~~~~vt~~~~~ 696 (732)
.++.|+.++.|.|....+|.+++. .|+|-.+...-. ++.+ ++||++.++|.+..+.
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps~ 345 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPSL 345 (513)
T ss_pred CceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecCC
Confidence 467899999999999999999998 788766554322 4555 7999999999998875
No 86
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=69.94 E-value=34 Score=29.88 Aligned_cols=53 Identities=19% Similarity=0.293 Sum_probs=38.7
Q ss_pred eEEEEEEEEecCCCCceEEEEEeCCCCcEEEEecceeEEecCCcEEEEEEEEEEcc
Q 040458 641 STHFIRTVTNVGDPNSAYKVTIRPPSGMTVTVQPEKLVFRRVGQKLNFLVRVEATA 696 (732)
Q Consensus 641 ~~~~~rtvtn~~~~~~ty~~~v~~~~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~ 696 (732)
......+|+|.++....|++....|... .|.|..-.+ ++|++..+.|++....
T Consensus 19 ~~~~~l~l~N~s~~~i~fKiktt~~~~y--~v~P~~G~i-~p~~~~~i~I~~~~~~ 71 (109)
T PF00635_consen 19 QQSCELTLTNPSDKPIAFKIKTTNPNRY--RVKPSYGII-EPGESVEITITFQPFD 71 (109)
T ss_dssp -EEEEEEEEE-SSSEEEEEEEES-TTTE--EEESSEEEE--TTEEEEEEEEE-SSS
T ss_pred eEEEEEEEECCCCCcEEEEEEcCCCceE--EecCCCEEE-CCCCEEEEEEEEEecc
Confidence 3556679999999988999998888755 566987666 8999999999888643
No 87
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=68.46 E-value=48 Score=30.85 Aligned_cols=68 Identities=9% Similarity=0.172 Sum_probs=51.1
Q ss_pred eEEEEEEEEecCCCC-ceEEEEEeCCCCcEEEEecceeEEecCCcEEEEEEEEEEcccccCCCCCCceEEEEEEE
Q 040458 641 STHFIRTVTNVGDPN-SAYKVTIRPPSGMTVTVQPEKLVFRRVGQKLNFLVRVEATAVKLSPGSSSMKSGKIVWS 714 (732)
Q Consensus 641 ~~~~~rtvtn~~~~~-~ty~~~v~~~~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~~~~~G~i~~~ 714 (732)
...+...|-|..+.. ..-++....-.++++-=.|+.+++ .+++.++++.+|++++ . ..++.||.|++.
T Consensus 70 DIvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL-~P~~~~~i~~~iKVsS----t-etGvIfG~I~Yd 138 (140)
T PF07718_consen 70 DIVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITL-APHGFARIKATIKVSS----T-ETGVIFGNIVYD 138 (140)
T ss_pred eEEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceee-CCCcEEEEEEEEEEEe----c-cCCEEEEEEEEe
Confidence 445555666776533 245566666677888888999998 7999999999999986 2 268999999986
No 88
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=46.40 E-value=58 Score=26.98 Aligned_cols=39 Identities=26% Similarity=0.579 Sum_probs=28.2
Q ss_pred EEEEecceeEEecCCcEEEEEEEEEEcccccCCCCCCceEEEEEEECC
Q 040458 669 TVTVQPEKLVFRRVGQKLNFLVRVEATAVKLSPGSSSMKSGKIVWSDG 716 (732)
Q Consensus 669 ~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~~~~~G~i~~~~~ 716 (732)
.+++.|..+++ ..|+++.|+++++... ..- ...+.|+..
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~~~-------~~~-~~~v~w~Ss 42 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTPSS-------AKV-TGKVTWTSS 42 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEECCC-------CCc-cceEEEEEC
Confidence 57788999998 6999999999966433 111 566888653
No 89
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=44.23 E-value=80 Score=23.01 Aligned_cols=43 Identities=21% Similarity=0.202 Sum_probs=23.6
Q ss_pred EEEEecCCCCceEEEEEeCCCC-cEEEEecceeEEecCCcEEEEEEEE
Q 040458 646 RTVTNVGDPNSAYKVTIRPPSG-MTVTVQPEKLVFRRVGQKLNFLVRV 692 (732)
Q Consensus 646 rtvtn~~~~~~ty~~~v~~~~g-~~v~v~p~~l~~~~~~~~~~~~vt~ 692 (732)
.+++|+|+.+..-+ ++...=| ..+. .+.-.+ ++||+..++|++
T Consensus 2 F~~~N~g~~~L~I~-~v~tsCgCt~~~--~~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVIT-DVQTSCGCTTAE--YSKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEE-EeeEccCCEEee--CCcceE-CCCCEEEEEEEC
Confidence 36789998654321 1222222 2233 222234 799999888874
No 90
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=41.56 E-value=1.4e+02 Score=25.17 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=31.1
Q ss_pred eeEEEEEEEEecCCCC-ceEEEEEeCCCCcEEEEeccee-EEecCCcEEEEEEEEEEc
Q 040458 640 MSTHFIRTVTNVGDPN-SAYKVTIRPPSGMTVTVQPEKL-VFRRVGQKLNFLVRVEAT 695 (732)
Q Consensus 640 ~~~~~~rtvtn~~~~~-~ty~~~v~~~~g~~v~v~p~~l-~~~~~~~~~~~~vt~~~~ 695 (732)
...+++.+|+|.|... ..+.+.+... |..+. -..+ .+ ++|+++++++++...
T Consensus 19 ~~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~~--~~~i~~L-~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 19 EPVTITVTVKNNGTADAENVTVRLYLD-GNSVS--TVTIPSL-APGESETVTFTWTPP 72 (101)
T ss_dssp SEEEEEEEEEE-SSS-BEEEEEEEEET-TEEEE--EEEESEB--TTEEEEEEEEEE-S
T ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEC-Cceec--cEEECCc-CCCcEEEEEEEEEeC
Confidence 4678888999999864 4577776543 22221 1122 34 789998888887764
No 91
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=36.70 E-value=36 Score=24.35 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=19.4
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhhcc
Q 040458 516 AALLKAAHPDWSPAAIRSALMTTAY 540 (732)
Q Consensus 516 aALl~q~~p~~sp~~ik~~L~~TA~ 540 (732)
+--|++.+|+|++..|+..|...-.
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~~ 29 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANNG 29 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcCC
Confidence 3457889999999999999976543
No 92
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=34.37 E-value=19 Score=16.40 Aligned_cols=6 Identities=33% Similarity=0.839 Sum_probs=4.3
Q ss_pred cccCCC
Q 040458 452 SFSARG 457 (732)
Q Consensus 452 ~fSs~G 457 (732)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 477776
No 93
>PLN03080 Probable beta-xylosidase; Provisional
Probab=31.75 E-value=95 Score=37.73 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=33.9
Q ss_pred eEEEEEEEEecCCCCceEEEEEe--CCCCcEEEEec------ceeEEecCCcEEEEEEEEEE
Q 040458 641 STHFIRTVTNVGDPNSAYKVTIR--PPSGMTVTVQP------EKLVFRRVGQKLNFLVRVEA 694 (732)
Q Consensus 641 ~~~~~rtvtn~~~~~~ty~~~v~--~~~g~~v~v~p------~~l~~~~~~~~~~~~vt~~~ 694 (732)
..+++.+|||+|+......+.+- .|.. .+...+ ..+.+ ++||+++++++++.
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~-~~~~P~k~L~gF~kv~L-~~Ges~~V~~~l~~ 744 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPV-VPGVPEKQLVGFDRVHT-ASGRSTETEIVVDP 744 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCcc-CCCCcchhccCcEeEee-CCCCEEEEEEEeCc
Confidence 47788999999998777666653 3321 111111 13344 79999998888875
No 94
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=31.61 E-value=2.1e+02 Score=23.99 Aligned_cols=53 Identities=21% Similarity=0.274 Sum_probs=25.5
Q ss_pred EEEEEEEecCCCCc--------eEEEEEeCCCCcEEE---------EecceeEEecCCcEEEEEEEEEEcc
Q 040458 643 HFIRTVTNVGDPNS--------AYKVTIRPPSGMTVT---------VQPEKLVFRRVGQKLNFLVRVEATA 696 (732)
Q Consensus 643 ~~~rtvtn~~~~~~--------ty~~~v~~~~g~~v~---------v~p~~l~~~~~~~~~~~~vt~~~~~ 696 (732)
.++.+|+|.++.+. .|-+.+....|-+|- ---...++ ++||+++|+.++....
T Consensus 3 ~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l-~pGe~~~~~~~~~~~~ 72 (82)
T PF12690_consen 3 EFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETL-EPGESLTYEETWDLKD 72 (82)
T ss_dssp EEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE--TT-EEEEEEEESS--
T ss_pred EEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEE-CCCCEEEEEEEECCCC
Confidence 45667777776433 445555545444433 22234555 7999999988876543
No 95
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=30.72 E-value=1.1e+02 Score=37.18 Aligned_cols=54 Identities=20% Similarity=0.310 Sum_probs=35.3
Q ss_pred eeEEEEEEEEecCCCCceEEEEE--eCCCCcEEEEecc-------eeEEecCCcEEEEEEEEEEcc
Q 040458 640 MSTHFIRTVTNVGDPNSAYKVTI--RPPSGMTVTVQPE-------KLVFRRVGQKLNFLVRVEATA 696 (732)
Q Consensus 640 ~~~~~~rtvtn~~~~~~ty~~~v--~~~~g~~v~v~p~-------~l~~~~~~~~~~~~vt~~~~~ 696 (732)
.+.+++.+|||+|+....-.+.+ ..|.+ .+. .|. .+.+ ++||++++++++....
T Consensus 667 ~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~-~~~-~P~k~L~gF~Kv~L-~pGes~~V~~~l~~~~ 729 (765)
T PRK15098 667 GKVTASVTVTNTGKREGATVVQLYLQDVTA-SMS-RPVKELKGFEKIML-KPGETQTVSFPIDIEA 729 (765)
T ss_pred CeEEEEEEEEECCCCCccEEEEEeccCCCC-CCC-CHHHhccCceeEeE-CCCCeEEEEEeecHHH
Confidence 46789999999999776555555 33332 111 221 3344 8999999888887653
No 96
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=29.66 E-value=3.7e+02 Score=23.27 Aligned_cols=55 Identities=13% Similarity=0.170 Sum_probs=34.1
Q ss_pred eeEEEEEEEEecCCCC-ceEE-----EEEeCCCCcE---EEEecceeEEecCCcEEEEEEEEEEcc
Q 040458 640 MSTHFIRTVTNVGDPN-SAYK-----VTIRPPSGMT---VTVQPEKLVFRRVGQKLNFLVRVEATA 696 (732)
Q Consensus 640 ~~~~~~rtvtn~~~~~-~ty~-----~~v~~~~g~~---v~v~p~~l~~~~~~~~~~~~vt~~~~~ 696 (732)
...++..+++|..+.. .+-+ .++.. .|+. ....-..+++ ++||+++++++|....
T Consensus 15 ~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~y-tG~~~~~~~~~~~~~~l-~p~~~~~~~~~i~p~~ 78 (107)
T PF00927_consen 15 QDFTVSVSFTNPSSEPLRNVSLNLCAFTVEY-TGLTRDQFKKEKFEVTL-KPGETKSVEVTITPSQ 78 (107)
T ss_dssp SEEEEEEEEEE-SSS-EECEEEEEEEEEEEC-TTTEEEEEEEEEEEEEE--TTEEEEEEEEE-HHS
T ss_pred CCEEEEEEEEeCCcCccccceeEEEEEEEEE-CCcccccEeEEEcceee-CCCCEEEEEEEEEcee
Confidence 3677888999999876 4422 22333 3553 4555556676 7999999999988654
No 97
>PRK15019 CsdA-binding activator; Provisional
Probab=27.45 E-value=59 Score=30.64 Aligned_cols=32 Identities=28% Similarity=0.274 Sum_probs=27.0
Q ss_pred eecCcccchhHHHHHHHHHHhhCCCCCHHHHHH
Q 040458 501 ILSGTSMACPHVSGLAALLKAAHPDWSPAAIRS 533 (732)
Q Consensus 501 ~~sGTSMAaP~VAG~aALl~q~~p~~sp~~ik~ 533 (732)
.+.|.| =|+.|-|.+|||.+.+-..+|++|.+
T Consensus 78 ~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 78 HFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 344555 57999999999999999999999875
No 98
>PRK13202 ureB urease subunit beta; Reviewed
Probab=27.35 E-value=1.3e+02 Score=26.37 Aligned_cols=49 Identities=14% Similarity=0.206 Sum_probs=27.9
Q ss_pred EEEEEEEEecCCCC----ceEEEE-Ee--------CCCCcEEEEe-cceeEEecCCcEEEEEEE
Q 040458 642 THFIRTVTNVGDPN----SAYKVT-IR--------PPSGMTVTVQ-PEKLVFRRVGQKLNFLVR 691 (732)
Q Consensus 642 ~~~~rtvtn~~~~~----~ty~~~-v~--------~~~g~~v~v~-p~~l~~~~~~~~~~~~vt 691 (732)
.+++.+|+|+|+.+ +-|++- +. ..-|..+.+. -..+.| ++||++++++.
T Consensus 21 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~LV 83 (104)
T PRK13202 21 SRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRF-EPGIPQIVGLV 83 (104)
T ss_pred ceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEE-CCCCeEEEEEE
Confidence 56788999999975 345422 21 1223333331 113456 78999876654
No 99
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=26.54 E-value=2e+02 Score=29.36 Aligned_cols=51 Identities=20% Similarity=0.193 Sum_probs=36.4
Q ss_pred EEEEEEEecCCCCceEEEEEe---CC---CC----------cEEEEecceeEEecCCcEEEEEEEEEE
Q 040458 643 HFIRTVTNVGDPNSAYKVTIR---PP---SG----------MTVTVQPEKLVFRRVGQKLNFLVRVEA 694 (732)
Q Consensus 643 ~~~rtvtn~~~~~~ty~~~v~---~~---~g----------~~v~v~p~~l~~~~~~~~~~~~vt~~~ 694 (732)
....+|.|.|+.+..+++++. .| .+ -++-++|..|.+ ++|+++.|+|.-..
T Consensus 34 ~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L-~pg~~q~IRli~lg 100 (234)
T PRK15308 34 ATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFAL-PAGTTRTVRVISLQ 100 (234)
T ss_pred eEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEE-CCCCeEEEEEEEcC
Confidence 345688999998887777763 22 11 257788999998 79999888766543
No 100
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=26.30 E-value=64 Score=30.04 Aligned_cols=34 Identities=26% Similarity=0.245 Sum_probs=28.0
Q ss_pred eeecCcccchhHHHHHHHHHHhhCCCCCHHHHHHH
Q 040458 500 NILSGTSMACPHVSGLAALLKAAHPDWSPAAIRSA 534 (732)
Q Consensus 500 ~~~sGTSMAaP~VAG~aALl~q~~p~~sp~~ik~~ 534 (732)
..+.|.| =|+.|-|.+|||.+.+-..+|++|.+.
T Consensus 72 ~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 72 LHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 3345666 589999999999999999999998743
No 101
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=23.87 E-value=66 Score=24.73 Aligned_cols=38 Identities=24% Similarity=0.340 Sum_probs=22.9
Q ss_pred eeeecCcccchhHHHHHHH------HHHhhCCCCCHHHHHHHHH
Q 040458 499 FNILSGTSMACPHVSGLAA------LLKAAHPDWSPAAIRSALM 536 (732)
Q Consensus 499 y~~~sGTSMAaP~VAG~aA------Ll~q~~p~~sp~~ik~~L~ 536 (732)
--.+.||=+..=.|....+ -+.+.||.+++++|+++|.
T Consensus 11 ~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 11 QPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp --EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred cceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 4466677776655555432 3455799999999999984
No 102
>PRK13203 ureB urease subunit beta; Reviewed
Probab=23.53 E-value=1.5e+02 Score=25.84 Aligned_cols=50 Identities=22% Similarity=0.324 Sum_probs=28.0
Q ss_pred eEEEEEEEEecCCCCc----eEEEE-Ee--------CCCCcEEEEe-cceeEEecCCcEEEEEEE
Q 040458 641 STHFIRTVTNVGDPNS----AYKVT-IR--------PPSGMTVTVQ-PEKLVFRRVGQKLNFLVR 691 (732)
Q Consensus 641 ~~~~~rtvtn~~~~~~----ty~~~-v~--------~~~g~~v~v~-p~~l~~~~~~~~~~~~vt 691 (732)
..+++.+|+|+|+.+- -|++- +. ..-|..+.+. -..+.| ++|+++++++.
T Consensus 19 r~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~LV 82 (102)
T PRK13203 19 RETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRF-EPGQTREVELV 82 (102)
T ss_pred CCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeE-CCCCeEEEEEE
Confidence 4567889999999753 34421 11 1223333331 113456 78999876654
No 103
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=23.33 E-value=1.7e+02 Score=25.53 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=28.3
Q ss_pred eEEEEEEEEecCCCCc----eEEE-EEe--------CCCCcEEEEe-cceeEEecCCcEEEEEEE
Q 040458 641 STHFIRTVTNVGDPNS----AYKV-TIR--------PPSGMTVTVQ-PEKLVFRRVGQKLNFLVR 691 (732)
Q Consensus 641 ~~~~~rtvtn~~~~~~----ty~~-~v~--------~~~g~~v~v~-p~~l~~~~~~~~~~~~vt 691 (732)
..+++.+|+|+|+.+- -|++ ++. ..-|..+.+. -..+.| ++||++++++.
T Consensus 19 r~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~LV 82 (101)
T cd00407 19 REAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRF-EPGEEKEVELV 82 (101)
T ss_pred CCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEE-CCCCeEEEEEE
Confidence 4567789999999753 3442 121 1223333331 113456 78999976654
No 104
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=23.29 E-value=1.2e+02 Score=21.70 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.3
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHhhc
Q 040458 515 LAALLKAAHPDWSPAAIRSALMTTA 539 (732)
Q Consensus 515 ~aALl~q~~p~~sp~~ik~~L~~TA 539 (732)
.+..|++.+|+++...|+..|...-
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~ 29 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANN 29 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 4667889999999999999998643
No 105
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=23.25 E-value=79 Score=29.46 Aligned_cols=32 Identities=28% Similarity=0.331 Sum_probs=26.9
Q ss_pred eecCcccchhHHHHHHHHHHhhCCCCCHHHHHH
Q 040458 501 ILSGTSMACPHVSGLAALLKAAHPDWSPAAIRS 533 (732)
Q Consensus 501 ~~sGTSMAaP~VAG~aALl~q~~p~~sp~~ik~ 533 (732)
.+.|.| =|+.|-|.+|||.+.+-..+|++|.+
T Consensus 68 ~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 68 ELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 344555 68999999999999999999999874
No 106
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=23.16 E-value=63 Score=22.01 Aligned_cols=13 Identities=38% Similarity=0.723 Sum_probs=10.8
Q ss_pred cchhHHHHHHHHH
Q 040458 507 MACPHVSGLAALL 519 (732)
Q Consensus 507 MAaP~VAG~aALl 519 (732)
.|||.+||++|-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998754
No 107
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.65 E-value=4.9e+02 Score=25.42 Aligned_cols=68 Identities=18% Similarity=0.252 Sum_probs=42.4
Q ss_pred eeEEEEEEEEecCCCCceEEEEEeC----CCCcEEEEec---ceeEEecCCcEEEEEEEEEEcccccCCCCCCceEEE--
Q 040458 640 MSTHFIRTVTNVGDPNSAYKVTIRP----PSGMTVTVQP---EKLVFRRVGQKLNFLVRVEATAVKLSPGSSSMKSGK-- 710 (732)
Q Consensus 640 ~~~~~~rtvtn~~~~~~ty~~~v~~----~~g~~v~v~p---~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~~~~~G~-- 710 (732)
...+++.+|.|+|+. .-|.+++.. ++.+++. +- .++.--++|+..+.+++++.+. .+.+.++.
T Consensus 38 ~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~lv-sG~~s~~~~~i~pg~~vsh~~vv~p~~------~G~f~~~~a~ 109 (181)
T PF05753_consen 38 EDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFELV-SGSLSASWERIPPGENVSHSYVVRPKK------SGYFNFTPAV 109 (181)
T ss_pred cEEEEEEEEEECCCC-eEEEEEEECCCCCccccEec-cCceEEEEEEECCCCeEEEEEEEeeee------eEEEEccCEE
Confidence 367889999999985 557788764 2343431 11 1122237899999988888754 24555553
Q ss_pred EEEEC
Q 040458 711 IVWSD 715 (732)
Q Consensus 711 i~~~~ 715 (732)
++.++
T Consensus 110 VtY~~ 114 (181)
T PF05753_consen 110 VTYRD 114 (181)
T ss_pred EEEEC
Confidence 44544
No 108
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=22.64 E-value=3.4e+02 Score=23.91 Aligned_cols=55 Identities=15% Similarity=0.074 Sum_probs=29.4
Q ss_pred eEEEEEEEEecCCCCceEE---EEEeCCCCcEEEEec---------ceeEEecCCcEEEEEEEEEEcc
Q 040458 641 STHFIRTVTNVGDPNSAYK---VTIRPPSGMTVTVQP---------EKLVFRRVGQKLNFLVRVEATA 696 (732)
Q Consensus 641 ~~~~~rtvtn~~~~~~ty~---~~v~~~~g~~v~v~p---------~~l~~~~~~~~~~~~vt~~~~~ 696 (732)
-..+..+|+|.|+....+. +.+....|-.+.... ..-++ ++|++.+..+-|.++.
T Consensus 37 fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i-~pG~~~~g~l~F~vp~ 103 (123)
T PF11611_consen 37 FVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETI-KPGESVTGKLVFEVPK 103 (123)
T ss_dssp EEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE--TT-EEEEEEEEEEST
T ss_pred EEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEE-CCCCEEEEEEEEEECC
Confidence 4677889999998765432 445444443333222 12344 6888888888888875
No 109
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.20 E-value=3.5e+02 Score=29.55 Aligned_cols=55 Identities=27% Similarity=0.395 Sum_probs=36.5
Q ss_pred EEEEEEEEecCCCCceEEEEEe-CCCCcEEEEecceeEEe-cCCcEEEEEEEEEEcc
Q 040458 642 THFIRTVTNVGDPNSAYKVTIR-PPSGMTVTVQPEKLVFR-RVGQKLNFLVRVEATA 696 (732)
Q Consensus 642 ~~~~rtvtn~~~~~~ty~~~v~-~~~g~~v~v~p~~l~~~-~~~~~~~~~vt~~~~~ 696 (732)
..+.--+++-+.....-.++++ -|.|+.++|.|+..++. ...+++.|.|++....
T Consensus 92 FkV~ADLt~a~~Gt~evkl~ve~l~~~ltvsV~P~~~~Vti~kk~tkk~~V~vei~~ 148 (403)
T COG4856 92 FKVVADLTHAGVGTHEVKLQVEGLPDGLTVSVNPEKATVTIEKKVTKKFPVSVEIDQ 148 (403)
T ss_pred eEEEEEhhhcCCCceEeeeEeecCCCCceEEEccceeEEEEeeeeEEEEeeeEEEcH
Confidence 4445566777654333334443 48899999999977664 3446678888887764
No 110
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=21.87 E-value=90 Score=34.12 Aligned_cols=61 Identities=20% Similarity=0.148 Sum_probs=44.1
Q ss_pred CCCccccccCCCCCCCCCCCCCCcEEeCCCcEEecCCCCCCCCCCCCCCCccceeeecCcccchhHHHHHHHHH
Q 040458 446 PAPVVASFSARGPNPETPEILKPDVIAPGLNILAAWPDKVGPSGIPTDKRKTEFNILSGTSMACPHVSGLAALL 519 (732)
Q Consensus 446 ~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl 519 (732)
.++........||+. -.-||+.+||+...|+.+.+.... .-..-+=|=.++|.+|.++|+.
T Consensus 353 ~AG~~~~~pgCg~CL----g~~~gvL~~gE~c~STSNRNF~GR---------qG~~~a~~~L~SPA~AAAaAv~ 413 (423)
T COG0065 353 EAGFEWREPGCGPCL----GMHPGVLGPGERCASTSNRNFEGR---------QGSPGARTYLASPAMAAAAAVE 413 (423)
T ss_pred hcCcEEcCCCCcccc----ccCCCcCCCCCEEeeccCCCCCcc---------CCCCCCeEEecCHHHHHHHHhh
Confidence 345667778899995 578899999999999988864210 0012233557899999999975
No 111
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=21.60 E-value=4.1e+02 Score=27.35 Aligned_cols=52 Identities=13% Similarity=0.020 Sum_probs=35.7
Q ss_pred eEEEEEEEEecCCCCceEEEEE--eCC---CCcEEEEecceeEEecCCcEEEEEEEEEEc
Q 040458 641 STHFIRTVTNVGDPNSAYKVTI--RPP---SGMTVTVQPEKLVFRRVGQKLNFLVRVEAT 695 (732)
Q Consensus 641 ~~~~~rtvtn~~~~~~ty~~~v--~~~---~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~ 695 (732)
....+.+|+|.++. .|-+.. ... ....+.|+|.-+.+ ++++.+.++|.....
T Consensus 55 ~~~~sl~i~N~~~~--p~LvQsWvd~~~~~~~~pFiVtPPLfRL-ep~~~~~lRIi~~~~ 111 (246)
T PRK15233 55 APSTSFWIMNEKEY--PILVQTQVYNDDKSSKAPFIVTPPILKV-ESNARTRLKVIPTSN 111 (246)
T ss_pred CcEEEEEEEcCCCC--cEEEEEEEecCCCCccCCEEECCCeEEE-CCCCceEEEEEECCC
Confidence 45667788997654 355544 211 12347889999998 799999998887643
No 112
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=21.24 E-value=1.9e+02 Score=25.31 Aligned_cols=50 Identities=16% Similarity=0.245 Sum_probs=28.3
Q ss_pred eEEEEEEEEecCCCCc----eEEEE-Ee--------CCCCcEEEEe-cceeEEecCCcEEEEEEE
Q 040458 641 STHFIRTVTNVGDPNS----AYKVT-IR--------PPSGMTVTVQ-PEKLVFRRVGQKLNFLVR 691 (732)
Q Consensus 641 ~~~~~rtvtn~~~~~~----ty~~~-v~--------~~~g~~v~v~-p~~l~~~~~~~~~~~~vt 691 (732)
..+++.+|+|.|+.+- -|++- +. ..-|..+.+. -..+.| ++||++++++.
T Consensus 19 r~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~LV 82 (101)
T TIGR00192 19 RKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRF-EPGEEKSVELV 82 (101)
T ss_pred CcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeE-CCCCeEEEEEE
Confidence 4567789999999753 34421 11 1223333331 113456 78999976654
No 113
>PRK13205 ureB urease subunit beta; Reviewed
Probab=21.16 E-value=1.6e+02 Score=27.53 Aligned_cols=51 Identities=12% Similarity=0.167 Sum_probs=28.9
Q ss_pred eeEEEEEEEEecCCCC----ceEEEE-Ee--------CCCCcEEEEe-cceeEEecCCcEEEEEEE
Q 040458 640 MSTHFIRTVTNVGDPN----SAYKVT-IR--------PPSGMTVTVQ-PEKLVFRRVGQKLNFLVR 691 (732)
Q Consensus 640 ~~~~~~rtvtn~~~~~----~ty~~~-v~--------~~~g~~v~v~-p~~l~~~~~~~~~~~~vt 691 (732)
+..+++.+|+|+|+.+ +-|++- +. ..-|..+.+. -..+.| ++|+++++++.
T Consensus 18 GR~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRF-EPGe~ktV~LV 82 (162)
T PRK13205 18 GREAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRL-EPGDARTVNLV 82 (162)
T ss_pred CCcEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcCcccccCCCCeEeE-CCCCeEEEEEE
Confidence 3466788999999975 345522 21 1223333331 113456 78888877654
No 114
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=21.12 E-value=98 Score=28.27 Aligned_cols=33 Identities=27% Similarity=0.227 Sum_probs=26.1
Q ss_pred eecCcccchhHHHHHHHHHHhhCCCCCHHHHHHH
Q 040458 501 ILSGTSMACPHVSGLAALLKAAHPDWSPAAIRSA 534 (732)
Q Consensus 501 ~~sGTSMAaP~VAG~aALl~q~~p~~sp~~ik~~ 534 (732)
.+.|.|= |+.|-|.+|||.+.+-..+|++|.+.
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 4455554 67999999999999999999998754
No 115
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=21.09 E-value=3.6e+02 Score=20.35 Aligned_cols=31 Identities=35% Similarity=0.329 Sum_probs=20.3
Q ss_pred eeEEEEEEEEecCCCCce-EEEEEeCCCCcEE
Q 040458 640 MSTHFIRTVTNVGDPNSA-YKVTIRPPSGMTV 670 (732)
Q Consensus 640 ~~~~~~rtvtn~~~~~~t-y~~~v~~~~g~~v 670 (732)
...+++.+|+|.|....+ ..++-.-|+|+.+
T Consensus 12 d~v~Yti~v~N~g~~~a~~v~v~D~lP~g~~~ 43 (53)
T TIGR01451 12 DTITYTITVTNNGNVPATNVVVTDILPSGTTF 43 (53)
T ss_pred CEEEEEEEEEECCCCceEeEEEEEcCCCCCEE
Confidence 478899999999986543 3333345666554
No 116
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=20.86 E-value=1.9e+02 Score=25.25 Aligned_cols=16 Identities=31% Similarity=0.295 Sum_probs=11.2
Q ss_pred eeEEEEEEEEecCCCC
Q 040458 640 MSTHFIRTVTNVGDPN 655 (732)
Q Consensus 640 ~~~~~~rtvtn~~~~~ 655 (732)
+..+++.+|+|+|+.+
T Consensus 17 gr~~~~l~V~N~GDRP 32 (100)
T PF00699_consen 17 GRERITLEVTNTGDRP 32 (100)
T ss_dssp TSEEEEEEEEE-SSS-
T ss_pred CCcEEEEEEEeCCCcc
Confidence 3567788999999975
Done!