BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040459
         (187 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B0S1N0|ACKA_FINM2 Acetate kinase OS=Finegoldia magna (strain ATCC 29328) GN=ackA PE=3
           SV=1
          Length = 393

 Score = 34.3 bits (77), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 60  LHVLTIFIAVSSLSVATSSSNKCYAAHMVATVLTGIFQGSVSVLIFASTSDFLGYLKSYV 119
           ++++T+ +   S S+A   + KCY   M  T L G+  G+ S  +  +   FL   K Y 
Sbjct: 199 INIITVHLGNGS-SIAAVKNGKCYDTSMGLTPLEGLLMGTRSGDLDPTVMTFLMNEKGYS 257

Query: 120 REEDGAVILKLAGALSV 136
            +E   ++ K +G L V
Sbjct: 258 ADEMNQILNKKSGVLGV 274


>sp|P44542|SIAP_HAEIN Sialic acid-binding periplasmic protein SiaP OS=Haemophilus
           influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
           GN=siaP PE=1 SV=1
          Length = 329

 Score = 33.5 bits (75), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 75  ATSSSNKCYAAHMVATVLTGIFQGSVSVLIFASTSDFLGYLKSYVRE-EDGAVILKLAGA 133
           A +SSN+  AA M A  +    QG + + ++ S+   LG  ++ +++ +DG++    A +
Sbjct: 34  AGTSSNEYKAAEMFAKEVKEKSQGKIEISLYPSSQ--LGDDRAMLKQLKDGSLDFTFAES 91

Query: 134 LSVLIFFLEWVVLALTFLL 152
               +F+ E  V AL +++
Sbjct: 92  ARFQLFYPEAAVFALPYVI 110


>sp|Q4QP41|SIAP_HAEI8 Sialic acid-binding periplasmic protein SiaP OS=Haemophilus
           influenzae (strain 86-028NP) GN=siaP PE=3 SV=1
          Length = 329

 Score = 33.5 bits (75), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 75  ATSSSNKCYAAHMVATVLTGIFQGSVSVLIFASTSDFLGYLKSYVRE-EDGAVILKLAGA 133
           A +SSN+  AA M A  +    QG + + ++ S+   LG  ++ +++ +DG++    A +
Sbjct: 34  AGTSSNEYKAAEMFAKEVKEKSQGKIEISLYPSSQ--LGDDRAMLKQLKDGSLDFTFAES 91

Query: 134 LSVLIFFLEWVVLALTFLL 152
               +F+ E  V AL +++
Sbjct: 92  ARFQLFYPEAAVFALPYVI 110


>sp|Q6BDA0|ELF6_ARATH Probable lysine-specific demethylase ELF6 OS=Arabidopsis thaliana
           GN=ELF6 PE=1 SV=1
          Length = 1340

 Score = 32.7 bits (73), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/22 (59%), Positives = 17/22 (77%)

Query: 1   MGVSFNINPSSSSFAETHSRKH 22
           +GVSF+INP SSSF   H ++H
Sbjct: 886 IGVSFSINPCSSSFTVGHGQEH 907


>sp|B1K264|ARGC_BURCC N-acetyl-gamma-glutamyl-phosphate reductase OS=Burkholderia
           cenocepacia (strain MC0-3) GN=argC PE=3 SV=1
          Length = 313

 Score = 32.3 bits (72), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 27/55 (49%)

Query: 132 GALSVLIFFLEWVVLALTFLLRYHAFVGGSNSGAAGASRFQEEDSKAWSRPFQVY 186
           GA+ +L   L+  +L   + +  HA  G S  G A    F+  D+ A + P QVY
Sbjct: 121 GAIGLLRPLLQAGLLPRDYPVSIHAVSGYSGGGRAAVDAFESGDAAARALPLQVY 175


>sp|A0B466|ARGC_BURCH N-acetyl-gamma-glutamyl-phosphate reductase OS=Burkholderia
           cenocepacia (strain HI2424) GN=argC PE=3 SV=1
          Length = 313

 Score = 32.0 bits (71), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 27/55 (49%)

Query: 132 GALSVLIFFLEWVVLALTFLLRYHAFVGGSNSGAAGASRFQEEDSKAWSRPFQVY 186
           GA+ +L   L+  +L   + +  HA  G S  G A    F+  D+ A + P QVY
Sbjct: 121 GAIGLLRPLLQAGLLPRDYPVSIHAVSGYSGGGRAAVDAFESGDAAARALPLQVY 175


>sp|Q1BK31|ARGC_BURCA N-acetyl-gamma-glutamyl-phosphate reductase OS=Burkholderia
           cenocepacia (strain AU 1054) GN=argC PE=3 SV=1
          Length = 313

 Score = 32.0 bits (71), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 27/55 (49%)

Query: 132 GALSVLIFFLEWVVLALTFLLRYHAFVGGSNSGAAGASRFQEEDSKAWSRPFQVY 186
           GA+ +L   L+  +L   + +  HA  G S  G A    F+  D+ A + P QVY
Sbjct: 121 GAIGLLRPLLQAGLLPRDYPVSIHAVSGYSGGGRAAVDAFESGDAAARALPLQVY 175


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.326    0.136    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,962,349
Number of Sequences: 539616
Number of extensions: 1884767
Number of successful extensions: 6965
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 6952
Number of HSP's gapped (non-prelim): 36
length of query: 187
length of database: 191,569,459
effective HSP length: 111
effective length of query: 76
effective length of database: 131,672,083
effective search space: 10007078308
effective search space used: 10007078308
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)