Query 040459
Match_columns 187
No_of_seqs 26 out of 28
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 13:48:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040459.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040459hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kvd_A SMK toxin; halotolerant 38.5 6.3 0.00021 27.7 -0.1 32 65-98 12-46 (63)
2 1v54_M VIIIB, IX, cytochrome C 20.4 22 0.00075 23.6 0.0 29 94-122 16-44 (46)
3 2vnt_A Urokinase-type plasmino 20.3 24 0.00083 27.1 0.3 23 103-125 252-274 (276)
4 2y69_M Cytochrome C oxidase po 14.6 41 0.0014 24.1 0.3 30 94-123 40-69 (70)
5 3bej_E Nuclear receptor coacti 13.5 64 0.0022 19.3 0.9 14 12-25 6-19 (26)
6 4dkw_A Large terminase protein 12.7 61 0.0021 25.9 0.8 25 101-125 140-164 (211)
7 4er8_A Tnparep for protein; pr 12.6 35 0.0012 26.1 -0.5 16 167-182 120-135 (165)
8 2any_A Kininogenin, plasma kal 12.4 51 0.0017 25.0 0.3 24 102-125 218-241 (241)
9 1v96_A Hypothetical protein PH 10.5 43 0.0015 23.6 -0.6 14 109-122 134-147 (149)
10 3pjz_A Potassium uptake protei 9.8 2.1E+02 0.0073 25.9 3.5 86 52-143 204-295 (494)
No 1
>1kvd_A SMK toxin; halotolerant yeast; 1.80A {Pichia farinosa} SCOP: d.70.1.2 PDB: 1kve_A
Probab=38.49 E-value=6.3 Score=27.66 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=18.4
Q ss_pred HHHHhhcCcccccCC---CchHHHHHHHHHHHHHhhc
Q 040459 65 IFIAVSSLSVATSSS---NKCYAAHMVATVLTGIFQG 98 (187)
Q Consensus 65 i~~avsGCs~~~~~~---~~~ytaHmv~t~LTaIfqG 98 (187)
-+.+++|||++.+-. ++ -.--+++.+-||.||
T Consensus 12 tiaaiagcsgaatfgglagg--ivgciaagilailqg 46 (63)
T 1kvd_A 12 TIAAIAGCSGAATFGGLAGG--IVGCIAAGILAILQG 46 (63)
T ss_dssp CCCCBCCCSSCCCCTTCCSH--HHHHHHHHHHHHHHH
T ss_pred ehHHHhCCccchhcccccch--HHHHHHHHHHHHHhc
Confidence 356789999886411 11 112234556678887
No 2
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=20.36 E-value=22 Score=23.61 Aligned_cols=29 Identities=14% Similarity=0.054 Sum_probs=20.2
Q ss_pred HHhhcceeheehhhhhhHHhhhccccccC
Q 040459 94 GIFQGSVSVLIFASTSDFLGYLKSYVREE 122 (187)
Q Consensus 94 aIfqGs~svliFtrt~dfl~~LKSyvree 122 (187)
+|+.+...+.++.--+=+|.+||+|.+.|
T Consensus 16 aigl~v~f~~~L~PagWVLshL~~YKk~e 44 (46)
T 1v54_M 16 AIGLSVTFLSFLLPAGWVLYHLDNYKKSS 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHTC-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 34444444556777788999999998875
No 3
>2vnt_A Urokinase-type plasminogen activator; UPA, inhibitor complex, hydrolase; HET: QGG; 2.2A {Homo sapiens}
Probab=20.32 E-value=24 Score=27.14 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=19.0
Q ss_pred eehhhhhhHHhhhccccccCchh
Q 040459 103 LIFASTSDFLGYLKSYVREEDGA 125 (187)
Q Consensus 103 liFtrt~dfl~~LKSyvreedg~ 125 (187)
-+|||.+.|+.-+++..+|++|-
T Consensus 252 ~vyt~V~~y~~WI~~~~~~~nGl 274 (276)
T 2vnt_A 252 GVYTRVSHFLPWIRSHTKEENGL 274 (276)
T ss_dssp EEEEEGGGGHHHHHHHHSCC---
T ss_pred EEEEEHHHHHHHHHHHhhhhcCC
Confidence 58999999999999999999873
No 4
>2y69_M Cytochrome C oxidase polypeptide 8H; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=14.58 E-value=41 Score=24.08 Aligned_cols=30 Identities=13% Similarity=0.049 Sum_probs=20.1
Q ss_pred HHhhcceeheehhhhhhHHhhhccccccCc
Q 040459 94 GIFQGSVSVLIFASTSDFLGYLKSYVREED 123 (187)
Q Consensus 94 aIfqGs~svliFtrt~dfl~~LKSyvreed 123 (187)
+|+.+...+.++.--+=+|.+|++|-+.|.
T Consensus 40 aigltv~f~~~L~PagWVLshLe~YKk~e~ 69 (70)
T 2y69_M 40 AIGLSVTFLSFLLPAGWVLYHLDNYKKSSA 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHSCC--
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhccccC
Confidence 333334445567778889999999988753
No 5
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=13.54 E-value=64 Score=19.35 Aligned_cols=14 Identities=50% Similarity=0.683 Sum_probs=12.1
Q ss_pred CCcchhhhhhHHHH
Q 040459 12 SSFAETHSRKHKLL 25 (187)
Q Consensus 12 ~s~~~~h~~thk~f 25 (187)
+|..|.|.-+||++
T Consensus 6 ~sL~EkHkILHrLL 19 (26)
T 3bej_E 6 SSLTERHKILHRLL 19 (26)
T ss_pred hhHHHHHHHHHHHH
Confidence 57899999999975
No 6
>4dkw_A Large terminase protein; DNA-packaging, small terminase, nuclease FO endonuclease, DNA, DNA-packaging motor, hydrolase; 2.02A {Enterobacteria phage P22}
Probab=12.71 E-value=61 Score=25.88 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=22.0
Q ss_pred eheehhhhhhHHhhhccccccCchh
Q 040459 101 SVLIFASTSDFLGYLKSYVREEDGA 125 (187)
Q Consensus 101 svliFtrt~dfl~~LKSyvreedg~ 125 (187)
-+.++.+...++.|++.|+++++|+
T Consensus 140 ~i~v~~~C~~~i~E~~~Y~~d~~g~ 164 (211)
T 4dkw_A 140 RFKVFNTCEPFFEEFRLYHRDENGK 164 (211)
T ss_dssp CEEEETTCHHHHHHHHHCEECTTSC
T ss_pred eEEEeCCChHHHHHHHhCcCCCCCC
Confidence 4778888999999999999998884
No 7
>4er8_A Tnparep for protein; protein-DNA complex, guide sequence, catalytic tyrosine, RNA recognition motif, transposase, HUH motif, DNA binding PROT complex; HET: DNA; 2.60A {Escherichia coli}
Probab=12.64 E-value=35 Score=26.11 Aligned_cols=16 Identities=6% Similarity=0.046 Sum_probs=8.9
Q ss_pred cccccccccccCCCCc
Q 040459 167 GASRFQEEDSKAWSRP 182 (187)
Q Consensus 167 ~~~r~~~~~~k~w~~~ 182 (187)
|.|.+--++.++|||+
T Consensus 120 PVraglV~~~~dw~~S 135 (165)
T 4er8_A 120 PVKHGWVKQVSDWPFS 135 (165)
T ss_dssp HHHTTSCSSGGGCCSB
T ss_pred HHhhcccCChhhCCcc
Confidence 3333333456789874
No 8
>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A*
Probab=12.44 E-value=51 Score=25.02 Aligned_cols=24 Identities=8% Similarity=0.421 Sum_probs=19.2
Q ss_pred heehhhhhhHHhhhccccccCchh
Q 040459 102 VLIFASTSDFLGYLKSYVREEDGA 125 (187)
Q Consensus 102 vliFtrt~dfl~~LKSyvreedg~ 125 (187)
--+|||.+.|+.-+++.+++.||+
T Consensus 218 p~vyt~V~~~~~WI~~~~~~~~~~ 241 (241)
T 2any_A 218 PGVYTKVAEYMDWILEKTQSSDGK 241 (241)
T ss_dssp CEEEEEGGGGHHHHHHHHSCC---
T ss_pred CeEEEEHHHhHHHHHHHhhcccCC
Confidence 468999999999999999999875
No 9
>1v96_A Hypothetical protein PH0500; rossmann fold, tRNA synthetase, nucleotide binding protein, structural genomics; 1.75A {Pyrococcus horikoshii} SCOP: c.120.1.1 PDB: 1ye5_A 1y82_A
Probab=10.55 E-value=43 Score=23.56 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=6.5
Q ss_pred hhHHhhhccccccC
Q 040459 109 SDFLGYLKSYVREE 122 (187)
Q Consensus 109 ~dfl~~LKSyvree 122 (187)
.+|++.+++|+|+|
T Consensus 134 ~efl~~~~~~~~~~ 147 (149)
T 1v96_A 134 DKFIKEVELMVEKE 147 (149)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 34444444555443
No 10
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=9.81 E-value=2.1e+02 Score=25.87 Aligned_cols=86 Identities=13% Similarity=0.174 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHHHHHHHhhcCcccccCCCchH---HHHHHHHHHHHHhhcceeheehhhhhhHHh---hhccccccCchh
Q 040459 52 LVGFFLILLHVLTIFIAVSSLSVATSSSNKCY---AAHMVATVLTGIFQGSVSVLIFASTSDFLG---YLKSYVREEDGA 125 (187)
Q Consensus 52 ~~G~~lIllhalTi~~avsGCs~~~~~~~~~y---taHmv~t~LTaIfqGs~svliFtrt~dfl~---~LKSyvreedg~ 125 (187)
.-+++--+.|+++.++- +|.|-... +=.-| ..+++.+.+ +..|+..+.+..+-- .+ ..|.|.|+++.+
T Consensus 204 Gm~~fdAi~Ha~Sa~~t-gGFs~~~~-Si~~~~s~~i~~vi~~~--milggl~F~v~~~~~--~~~~~~~~~~~~~~e~r 277 (494)
T 3pjz_A 204 GMTPFDAISHSFSTIAI-GGFSTHDA-SMGYFDSYAINLITVVF--LLISACNFTLHFAAF--ASGGVHPKYYWKDPEFR 277 (494)
T ss_dssp TCCSHHHHTTTHHHHTT-CCCCSSTT-GGGSSCCTTHHHHHHHH--HHHHTSCHHHHHHHT--TTSTTCHHHHHTSHHHH
T ss_pred CCcHHHHHHHHHHHHhC-CCCCCccc-hhhhhcCHHHHHHHHHH--HHHHhccHHHHHHHH--hcccchhhHHhCCcHHH
Confidence 34567788899887765 67753321 10222 245665554 344555555443321 11 256677777777
Q ss_pred HHHHhhhhHHHHHHHHHH
Q 040459 126 VILKLAGALSVLIFFLEW 143 (187)
Q Consensus 126 VILkl~GgL~~~ifclew 143 (187)
+.+.+...+.+++...+|
T Consensus 278 ~~l~~~~~~~~~~~~~l~ 295 (494)
T 3pjz_A 278 AFIFIQVLLFLVCFLLLL 295 (494)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 777766666555555544
Done!