Query 040459
Match_columns 187
No_of_seqs 26 out of 28
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 13:48:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040459.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040459hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 g1kve.1 d.70.1.2 (A:,B:) SMK t 17.0 11 0.00077 27.9 -0.6 32 65-98 12-46 (140)
2 d1v54m_ f.23.7.1 (M:) Mitochon 10.1 29 0.0021 21.3 0.0 28 93-120 15-42 (43)
3 d1o82a_ a.64.2.1 (A:) Bacterio 7.4 45 0.0033 22.1 0.1 42 80-123 22-63 (70)
4 d1ybea2 d.41.2.2 (A:8-167) Nic 6.1 30 0.0022 25.3 -1.5 41 108-149 102-148 (160)
5 d2h00a1 c.66.1.54 (A:5-254) Me 5.9 64 0.0046 24.0 0.3 16 33-48 68-83 (250)
6 d1orsc_ f.14.1.1 (C:) Potassiu 4.8 3E+02 0.021 18.3 3.3 25 121-145 32-56 (132)
7 d1xl4a2 f.14.1.1 (A:23-138) In 4.5 4.4E+02 0.032 16.5 5.4 40 116-156 9-48 (116)
8 d1h2sb_ f.17.4.1 (B:) Sensory 4.4 2.4E+02 0.017 17.8 2.3 18 54-71 1-18 (60)
9 d1rk8b_ d.232.1.1 (B:) Mago na 4.1 1.3E+02 0.0094 22.2 0.9 11 172-182 68-78 (141)
10 d1or7c_ a.180.1.1 (C:) N-termi 4.0 2E+02 0.014 17.7 1.7 15 79-93 30-44 (66)
No 1
>g1kve.1 d.70.1.2 (A:,B:) SMK toxin {Halotolerant yeast (Pichia farinosa) [TaxId: 4920]}
Probab=16.95 E-value=11 Score=27.90 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=18.3
Q ss_pred HHHHhhcCcccccC---CCchHHHHHHHHHHHHHhhc
Q 040459 65 IFIAVSSLSVATSS---SNKCYAAHMVATVLTGIFQG 98 (187)
Q Consensus 65 i~~avsGCs~~~~~---~~~~ytaHmv~t~LTaIfqG 98 (187)
-+.+++|||++.+- .++ -.--+++.+-||.||
T Consensus 12 tiaaiagcsgaatfgglagg--ivgciaagilailqg 46 (140)
T g1kve.1 12 TIAAIAGCSGAATFGGLAGG--IVGCIAAGILAILQG 46 (140)
T ss_dssp CCCCBCCCSSCCCGGGCCSH--HHHHHHHHHHHHHHH
T ss_pred ehhhhhCCccccccccccch--hHHHHHHHHHHHHhc
Confidence 35678999987541 111 112244556678776
No 2
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.08 E-value=29 Score=21.35 Aligned_cols=28 Identities=14% Similarity=0.051 Sum_probs=19.5
Q ss_pred HHHhhcceeheehhhhhhHHhhhccccc
Q 040459 93 TGIFQGSVSVLIFASTSDFLGYLKSYVR 120 (187)
Q Consensus 93 TaIfqGs~svliFtrt~dfl~~LKSyvr 120 (187)
.||+..+..+-+..-.+=+|.+|.+|.|
T Consensus 15 ~aigLt~~f~~~L~PaGwVLshLe~YKk 42 (43)
T d1v54m_ 15 QAIGLSVTFLSFLLPAGWVLYHLDNYKK 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHhcc
Confidence 3555555556666777888888888866
No 3
>d1o82a_ a.64.2.1 (A:) Bacteriocin AS-48 {Enterococcus faecalis [TaxId: 1351]}
Probab=7.42 E-value=45 Score=22.09 Aligned_cols=42 Identities=21% Similarity=0.376 Sum_probs=33.1
Q ss_pred CchHHHHHHHHHHHHHhhcceeheehhhhhhHHhhhccccccCc
Q 040459 80 NKCYAAHMVATVLTGIFQGSVSVLIFASTSDFLGYLKSYVREED 123 (187)
Q Consensus 80 ~~~ytaHmv~t~LTaIfqGs~svliFtrt~dfl~~LKSyvreed 123 (187)
++|-+ .+...|+|+|.|-.|++.-.-.+...++||....+..
T Consensus 22 gg~vt--tivsil~avgsgglsllaaag~e~i~~~lkk~i~~kg 63 (70)
T d1o82a_ 22 GGWVT--TIVSILTAVGSGGLSLLAAAGRESIKAYLKKEIKKKG 63 (70)
T ss_dssp TCCHH--HHHHHHHHHCHHHHHHHHHTTTSCHHHHHHHHHHHHC
T ss_pred Ccchh--hHHHHHHHHccccHHHHHHhcHHHHHHHHHHHHHHhC
Confidence 45554 4567899999999999999888888999987666544
No 4
>d1ybea2 d.41.2.2 (A:8-167) Nicotinate phosphoribosyltransferase, N-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
Probab=6.06 E-value=30 Score=25.29 Aligned_cols=41 Identities=27% Similarity=0.421 Sum_probs=29.2
Q ss_pred hhhHHhhhccccc------cCchhHHHHhhhhHHHHHHHHHHHHHHHH
Q 040459 108 TSDFLGYLKSYVR------EEDGAVILKLAGALSVLIFFLEWVVLALT 149 (187)
Q Consensus 108 t~dfl~~LKSyvr------eedg~VILkl~GgL~~~ifclew~vL~LA 149 (187)
..+|+++||.|.- .+||++.+++-|=+.-+++ +|..+|.+-
T Consensus 102 ~~~fl~~L~~f~f~~~~~~~~eG~l~i~V~GP~~~~~L-~EtplLaII 148 (160)
T d1ybea2 102 EPEFLSWLSSYQLPEYELFKRDGQYELNFHGRWMDTTL-WEIPALSII 148 (160)
T ss_dssp CHHHHHHHHTCCCCCCEEEECSSCEEEEECSBHHHHGG-GHHHHHHHH
T ss_pred CHHHHHHHhcCCCCceEEEecCCcEEEEEEEEHHHHHH-HHHHHHHHH
Confidence 4688888875543 3478888999998877665 677666543
No 5
>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.89 E-value=64 Score=24.00 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=14.2
Q ss_pred HhhhhhHHHHHhhhhc
Q 040459 33 LAASSSFIFLTLSLRL 48 (187)
Q Consensus 33 L~aAsscIfltLsLRL 48 (187)
+|.+++||.++|+-|.
T Consensus 68 iGtGsg~I~~~l~~~~ 83 (250)
T d2h00a1 68 IGTGASCIYPLLGATL 83 (250)
T ss_dssp ESCTTTTHHHHHHHHH
T ss_pred eCCCchHHHHHHHHhC
Confidence 6899999999998876
No 6
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]}
Probab=4.82 E-value=3e+02 Score=18.27 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=21.7
Q ss_pred cCchhHHHHhhhhHHHHHHHHHHHH
Q 040459 121 EEDGAVILKLAGALSVLIFFLEWVV 145 (187)
Q Consensus 121 eedg~VILkl~GgL~~~ifclew~v 145 (187)
+++...++...--.+..+|.+|.+.
T Consensus 32 ~~~~~~~l~~~e~v~~~iF~~E~~l 56 (132)
T d1orsc_ 32 SGEYLVRLYLVDLILVIILWADYAY 56 (132)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHH
Confidence 6677888999999999999999763
No 7
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}
Probab=4.49 E-value=4.4e+02 Score=16.53 Aligned_cols=40 Identities=15% Similarity=0.241 Sum_probs=27.1
Q ss_pred ccccccCchhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 040459 116 KSYVREEDGAVILKLAGALSVLIFFLEWVVLALTFLLRYHA 156 (187)
Q Consensus 116 KSyvreedg~VILkl~GgL~~~ifclew~vL~LAF~l~y~~ 156 (187)
|.|.+|.-. .++++---..++.+++.++...+.|.+=|+.
T Consensus 9 ~g~~~D~f~-~ll~~~~~~~~~~~~~~~~~~~~~fa~~y~~ 48 (116)
T d1xl4a2 9 RGWLDDHYH-DLLTVSWPVFITLITGLYLVTNALFALAYLA 48 (116)
T ss_dssp CCSSCSSTT-HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666554 4567766677777777777777777766653
No 8
>d1h2sb_ f.17.4.1 (B:) Sensory rhodopsin II transducer, Htr2 {Natronomonas pharaonis [TaxId: 2257]}
Probab=4.42 E-value=2.4e+02 Score=17.76 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 040459 54 GFFLILLHVLTIFIAVSS 71 (187)
Q Consensus 54 G~~lIllhalTi~~avsG 71 (187)
|-.+|+..++|+.++...
T Consensus 1 gavfifvgaltvlfgaia 18 (60)
T d1h2sb_ 1 GAVFIFVGALTVLFGAIA 18 (60)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEcHHHHHHhhhh
Confidence 346788999999887543
No 9
>d1rk8b_ d.232.1.1 (B:) Mago nashi protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=4.13 E-value=1.3e+02 Score=22.23 Aligned_cols=11 Identities=36% Similarity=0.878 Sum_probs=8.4
Q ss_pred ccccccCCCCc
Q 040459 172 QEEDSKAWSRP 182 (187)
Q Consensus 172 ~~~~~k~w~~~ 182 (187)
-+||.+.||-|
T Consensus 68 ~kedD~~WP~p 78 (141)
T d1rk8b_ 68 MQEDDLPWPPP 78 (141)
T ss_dssp GGCCCTTSCCC
T ss_pred cccccccCCCC
Confidence 45678899976
No 10
>d1or7c_ a.180.1.1 (C:) N-terminal, cytoplasmic domain of anti-sigmaE factor RseA {Escherichia coli [TaxId: 562]}
Probab=4.03 E-value=2e+02 Score=17.69 Aligned_cols=15 Identities=7% Similarity=0.206 Sum_probs=12.8
Q ss_pred CCchHHHHHHHHHHH
Q 040459 79 SNKCYAAHMVATVLT 93 (187)
Q Consensus 79 ~~~~ytaHmv~t~LT 93 (187)
...|..+|++.-++=
T Consensus 30 ~~~W~~Yhli~d~lr 44 (66)
T d1or7c_ 30 QKTWESYHLIRDSMR 44 (66)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 469999999998874
Done!