Query 040461
Match_columns 318
No_of_seqs 166 out of 1056
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 08:42:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040461.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040461hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02373 soluble inorganic pyr 100.0 1.5E-70 3.2E-75 492.0 20.6 183 63-245 1-183 (188)
2 PRK00642 inorganic pyrophospha 100.0 3.1E-67 6.7E-72 475.7 20.6 177 67-243 5-203 (205)
3 PRK01250 inorganic pyrophospha 100.0 9.9E-66 2.1E-70 456.7 20.0 171 72-242 1-175 (176)
4 PLN02707 Soluble inorganic pyr 100.0 1.7E-65 3.6E-70 479.6 21.3 203 43-247 30-258 (267)
5 PRK02230 inorganic pyrophospha 100.0 3.2E-61 6.9E-66 430.6 19.0 159 85-243 3-162 (184)
6 cd00412 pyrophosphatase Inorga 100.0 3.7E-61 7.9E-66 420.1 17.3 154 85-238 1-155 (155)
7 PF00719 Pyrophosphatase: Inor 100.0 8.6E-61 1.9E-65 417.2 15.0 155 88-242 1-156 (156)
8 COG0221 Ppa Inorganic pyrophos 100.0 3.5E-59 7.6E-64 413.4 17.9 170 72-242 1-171 (171)
9 KOG1626 Inorganic pyrophosphat 100.0 1.3E-57 2.8E-62 423.4 15.7 203 47-251 5-238 (279)
10 KOG1626 Inorganic pyrophosphat 95.0 0.022 4.8E-07 54.9 3.6 114 48-162 15-158 (279)
11 PF13953 PapC_C: PapC C-termin 50.9 23 0.00051 26.7 3.6 31 253-283 33-66 (68)
12 PF08250 Sperm_act_pep: Sperm- 41.5 10 0.00022 20.0 0.3 8 294-301 2-9 (10)
13 PF14461 Prok-E2_B: Prokaryoti 40.8 34 0.00074 29.0 3.5 44 270-315 34-78 (133)
14 COG1094 Predicted RNA-binding 31.3 1E+02 0.0022 29.0 5.2 111 96-238 36-163 (194)
15 PF07177 Neuralized: Neuralize 28.8 52 0.0011 25.5 2.5 22 141-162 30-51 (69)
16 PF05193 Peptidase_M16_C: Pept 28.7 1.7E+02 0.0036 23.5 5.6 45 199-243 3-47 (184)
17 PF06249 EutQ: Ethanolamine ut 28.6 41 0.00089 30.2 2.1 29 90-126 122-150 (152)
18 cd05694 S1_Rrp5_repeat_hs2_sc2 28.3 40 0.00087 25.9 1.8 28 126-163 30-57 (74)
19 smart00588 NEUZ domain in neur 27.1 81 0.0018 26.9 3.6 47 136-186 26-72 (123)
20 TIGR01659 sex-lethal sex-letha 25.1 3.2E+02 0.0069 27.2 7.8 66 172-237 174-256 (346)
21 KOG1110 Putative steroid membr 23.8 39 0.00084 31.5 1.1 37 175-212 109-145 (183)
22 cd01460 vWA_midasin VWA_Midasi 23.4 33 0.00071 33.1 0.6 27 184-210 237-263 (266)
23 PF14259 RRM_6: RNA recognitio 21.6 95 0.0021 22.1 2.6 43 195-237 6-60 (70)
24 PRK15196 secreted effector pro 21.1 72 0.0016 31.8 2.5 85 196-302 30-115 (350)
No 1
>PLN02373 soluble inorganic pyrophosphatase
Probab=100.00 E-value=1.5e-70 Score=492.02 Aligned_cols=183 Identities=90% Similarity=1.437 Sum_probs=178.7
Q ss_pred ecccCCcccCCCCCCCCCCCCCCeEEEEEEecCCCCceEEEeccCCCeEeeeecccccccccccCccccccCCCCCcceE
Q 040461 63 SLSRRSVAAHPWHDLEIGPGAPNVFNCVVEITKGSKVKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDV 142 (318)
Q Consensus 63 s~~~~~~~~spwHDIPl~~~~p~~vnvVVEIPkgS~aKyEidk~~g~ik~DRvl~~~~~YP~NYGfIPqTl~gDGDPLDV 142 (318)
||+++...+|||||||++++.|+.+||||||||||++|||+|+++|.|++||++++++.||+|||||||||+||||||||
T Consensus 1 ~~~~~~~~~~~whdi~~~~~~~~~v~vVIEIP~gs~~KyE~dk~~g~i~~Dr~l~~~~~yP~nYGfIP~T~~~DgDPLDv 80 (188)
T PLN02373 1 SMSRRSVAAHPWHDLEIGPGAPAIFNCVVEITKGSKVKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDV 80 (188)
T ss_pred CcccccccCCccccCCCCCCCCCEEEEEEEECCCCCeeEEEccCCCCEEEeeecccCCcCCcccccccccccCCCCccEE
Confidence 47888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCccCCCeeEEEEEEeeeEEeeeCCCCccEEEEEeCCCcccCCCCCCCCCChhhHHHHHHHHHHcccCCCceeEeCe
Q 040461 143 LVLMQEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCADDPEYKHYTDIKELPPHRLTEIRRFFEDYKKNENKKVAVNE 222 (318)
Q Consensus 143 lVLg~~p~~pG~Vv~vRvIGvL~MiDeGE~D~KIIaV~~~DP~~~~i~dI~DLp~~~l~eI~~FF~~YK~leGK~v~v~g 222 (318)
|||++.|+.||++++|||||+|+|+|+||+|||||||+++||+|++++|++|||++++++|+|||++||.+|||++++++
T Consensus 81 lvl~~~~~~~G~vi~~R~iG~l~m~D~ge~D~KiIaV~~~dp~~~~i~dl~Dl~~~~l~~I~~fF~~YK~legK~v~v~g 160 (188)
T PLN02373 81 LVLMQEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCADDPEYRHYTDIKELPPHRLAEIRRFFEDYKKNENKEVAVND 160 (188)
T ss_pred EEecCCCCCCceEEEEEEEEEEEEeeCCCCCCeEEEEECCCcccccCCChHHCCHHHHHHHHHHHHHhcccCCCeEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCHHHHHHHHHHHHHHHhcccc
Q 040461 223 FLPTSTAVEAIQYSMCVRPKLSF 245 (318)
Q Consensus 223 ~~d~e~A~kvI~ea~~~y~~~~~ 245 (318)
|.|+++|+++|++|+++|+++..
T Consensus 161 ~~~~~~A~~~I~~~~~~y~~~~~ 183 (188)
T PLN02373 161 FLPAEAAIEAIQYSMDLYAEYIV 183 (188)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988753
No 2
>PRK00642 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=3.1e-67 Score=475.73 Aligned_cols=177 Identities=44% Similarity=0.668 Sum_probs=169.8
Q ss_pred CCcccCCCCCCCCCCCCCCeEEEEEEecCCCCceEEEeccCCCeEeeeecccccccccccCccccccC------------
Q 040461 67 RSVAAHPWHDLEIGPGAPNVFNCVVEITKGSKVKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLC------------ 134 (318)
Q Consensus 67 ~~~~~spwHDIPl~~~~p~~vnvVVEIPkgS~aKyEidk~~g~ik~DRvl~~~~~YP~NYGfIPqTl~------------ 134 (318)
.+..+|||||||++++.|+.|||||||||||++|||+|+++|.+++||++++++.||+|||||||||+
T Consensus 5 ~~~~~spwhdi~~~~~~~~~vn~VIEIP~gs~~KyE~dk~~g~~~ldr~l~~~~~yP~nYGfIPqT~~dp~~~~~~~~~~ 84 (205)
T PRK00642 5 PLSRAHPWHGLSLGPDAPESVCCYIEITPFDTVKYELDKATGYLKVDRPQKFSNFCPALYGFIPRTYCGDLSGKLSGEQS 84 (205)
T ss_pred cccccCccccCCCCCCCCCEEEEEEEECCCCCeeEEEecCCCceEEeeecccCCcCCcccCcCcccccCccccccccccc
Confidence 45568999999999998999999999999999999999999999999999999999999999999995
Q ss_pred ------CCCCcceEEEecCccCCCeeE-EEEEEeeeEEeeeCCCCccEEEEEeCCCcccCCCCCCCCCChhhHHHHHHHH
Q 040461 135 ------EDNDPLDVLVLMQEPVLPGCF-LRARAIGLMPMIDQGEKDDKIIAVCADDPEYKHYTDIKELPPHRLTEIRRFF 207 (318)
Q Consensus 135 ------gDGDPLDVlVLg~~p~~pG~V-v~vRvIGvL~MiDeGE~D~KIIaV~~~DP~~~~i~dI~DLp~~~l~eI~~FF 207 (318)
|||||||||||++.|+.||++ ++|||||+|+|+|+||+|||||||+++||+|++|+|++||+++++++|+|||
T Consensus 85 ~~~~~~gDgDPLDvlvl~~~~~~~G~v~i~~R~iG~l~miD~ge~D~KIiaV~~~Dp~~~~i~dl~Dl~~~~l~~I~~fF 164 (205)
T PRK00642 85 GREDIKGDGDPLDICVLTEKNITHGNILLQARPIGGLRMIDGGEADDKIIAVLEDDLVYGEIKDISECPGTLLDRLQHYF 164 (205)
T ss_pred ccccCCCCCCceEEEEecCCCcCCCceEEEEEEeEEEEEecCCCccceEEEEECCCCccccCCChHHCCHHHHHHHHHHH
Confidence 799999999999999999985 7999999999999999999999999999999999999999999999999999
Q ss_pred HHcccCCC---ceeEeCeecCHHHHHHHHHHHHHHHhcc
Q 040461 208 EDYKKNEN---KKVAVNEFLPTSTAVEAIQYSMCVRPKL 243 (318)
Q Consensus 208 ~~YK~leG---K~v~v~g~~d~e~A~kvI~ea~~~y~~~ 243 (318)
++||.++| |+++++||.|+++|+++|++||++|+++
T Consensus 165 ~~YK~legk~~k~~~~~g~~~~~~A~~vI~~~~~~y~~~ 203 (205)
T PRK00642 165 LTYKATPGELIKGVEIVGIYGKEEAQKVIQLAHEDYANK 203 (205)
T ss_pred HHHcCcccCCCCeEEECCCcCHHHHHHHHHHHHHHHHHh
Confidence 99999995 4488999999999999999999999875
No 3
>PRK01250 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=9.9e-66 Score=456.72 Aligned_cols=171 Identities=40% Similarity=0.695 Sum_probs=167.2
Q ss_pred CCCCCCCCCCCCCCeEEEEEEecCCCC-ceEEEeccCCCeEeeeecccccccccccCccccccCCCCCcceEEEecCccC
Q 040461 72 HPWHDLEIGPGAPNVFNCVVEITKGSK-VKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLVLMQEPV 150 (318)
Q Consensus 72 spwHDIPl~~~~p~~vnvVVEIPkgS~-aKyEidk~~g~ik~DRvl~~~~~YP~NYGfIPqTl~gDGDPLDVlVLg~~p~ 150 (318)
+.||++|.+.+.|+.|||||||||||+ +|||+|+++|.+++||++++++.||+|||||||||+|||||||||||++.++
T Consensus 1 ~~~~~l~~~~~~~~~v~vvvEIPkgs~~~KyE~d~~~g~~~~dR~l~~~~~yP~nYGfIP~T~~~DgDPLDvlvl~~~~~ 80 (176)
T PRK01250 1 MSLNKIPAGKDLPEDINVIIEIPANSDPIKYEVDKESGALFVDRFLYTAMFYPCNYGFIPHTLSLDGDPVDVLVVTPYPL 80 (176)
T ss_pred CChhhCCCCCCCCCEEEEEEEeCCCCCceeEEEecCCCCEEEeeccCCCCcCCcCcccCCCcccCCCCceEEEEecCCCC
Confidence 379999999999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEEEeeeEEeeeCCCCccEEEEEeCC--CcccCCCCCCCCCChhhHHHHHHHHHHcccCC-CceeEeCeecCHH
Q 040461 151 LPGCFLRARAIGLMPMIDQGEKDDKIIAVCAD--DPEYKHYTDIKELPPHRLTEIRRFFEDYKKNE-NKKVAVNEFLPTS 227 (318)
Q Consensus 151 ~pG~Vv~vRvIGvL~MiDeGE~D~KIIaV~~~--DP~~~~i~dI~DLp~~~l~eI~~FF~~YK~le-GK~v~v~g~~d~e 227 (318)
.||++++|||||+|+|+|+||.|||||||+++ ||+|++++|++|||++++++|+|||++||.++ ||++++.+|.|++
T Consensus 81 ~~G~vv~~r~iG~l~m~D~ge~D~KiiaV~~~~~dp~~~~i~dl~dl~~~~l~eI~~fF~~YK~le~gk~~~v~g~~~~~ 160 (176)
T PRK01250 81 VPGSVIRCRPVGVLKMEDESGEDAKIIAVPHDKLSPEYDHIKDVNDLPELLKAQIKHFFEHYKDLEKGKWVKVEGWGGAE 160 (176)
T ss_pred CCceEEEEEEEEEEEeecCCCCCCeEEEEECCCCCccccccCChHHCCHHHHHHHHHHHHHhcCCCCCCCEEecCccCHH
Confidence 99999999999999999999999999999998 79999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 040461 228 TAVEAIQYSMCVRPK 242 (318)
Q Consensus 228 ~A~kvI~ea~~~y~~ 242 (318)
+|+++|++|+++|++
T Consensus 161 ~A~~~I~~~~~~y~~ 175 (176)
T PRK01250 161 EAKAEIVEAIERAKK 175 (176)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999975
No 4
>PLN02707 Soluble inorganic pyrophosphatase
Probab=100.00 E-value=1.7e-65 Score=479.64 Aligned_cols=203 Identities=32% Similarity=0.482 Sum_probs=185.6
Q ss_pred chhhhcccCCCCCccceeeeecccCCcccCCCCCCCCCCCCCCeEEEEEEecCCCCceEEEecc--CCCeEeeeeccccc
Q 040461 43 SEEAANVSRSAPKLNERILSSLSRRSVAAHPWHDLEIGPGAPNVFNCVVEITKGSKVKYELDKK--TGLIKVDRVLYSSV 120 (318)
Q Consensus 43 ~~~~~~~~~~~~~~~~Rv~~s~~~~~~~~spwHDIPl~~~~p~~vnvVVEIPkgS~aKyEidk~--~g~ik~DRvl~~~~ 120 (318)
......++|..+|.+||++.. ...+..+|||||||++ ..+++|||||||||||++|||+|++ .+.|+|||.+...+
T Consensus 30 ~~~~~~~~G~~~t~~~r~~~~-~~~g~~~spwHdIpl~-~~~~~vn~VVEIPrgs~~KyEidk~~~~npi~qD~~~g~lr 107 (267)
T PLN02707 30 AAYAVEEEGEAETLDYRVFFS-DGSGKKVSPWHDIPLH-AGDGTFNFVVEIPKETSAKMEVATDEPFTPIKQDTKKGKLR 107 (267)
T ss_pred cceeEEeecCCCCcceEEEEE-CCCCCccCchhcCCCC-CCCCEEEEEEEECCCCceeEEECccCCCCCEEEeeecCceE
Confidence 344557789999999999842 3467789999999999 5689999999999999999999977 57899999998888
Q ss_pred cccc----ccCcccccc-------------CCCCCcceEEEecCccCCCeeEEEEEEeeeEEeeeCCCCccEEEEEeCCC
Q 040461 121 VYPH----NYGFIPRTL-------------CEDNDPLDVLVLMQEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCADD 183 (318)
Q Consensus 121 ~YP~----NYGfIPqTl-------------~gDGDPLDVlVLg~~p~~pG~Vv~vRvIGvL~MiDeGE~D~KIIaV~~~D 183 (318)
.||+ ||||||||| +|||||||||||++.++.||++++|||||+|+|+|+||+|||||||+++|
T Consensus 108 ~yP~~~~~NYGfIPqTwedp~~~~~~~~~l~gDgDPLDVlvi~~~~~~pG~Vv~vR~IGvL~miDeGE~D~KIIaV~~~D 187 (267)
T PLN02707 108 DYPYNINWNYGLLPQTWEDPTHANPEVEGAFGDNDPVDVVEIGERAAKIGEVLKVKPLGVLAMIDEGELDWKVVAISADD 187 (267)
T ss_pred ECCCcCccccccccccccCcccccccccccCCCCCccEEEEecCCCcCCccEEEEEEeEEEEEEeCCCCCCEEEEEECCC
Confidence 8887 999999997 48999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCChhh---HHHHHHHHHHcccCCCceeEe----CeecCHHHHHHHHHHHHHHHhcccccc
Q 040461 184 PEYKHYTDIKELPPHR---LTEIRRFFEDYKKNENKKVAV----NEFLPTSTAVEAIQYSMCVRPKLSFNF 247 (318)
Q Consensus 184 P~~~~i~dI~DLp~~~---l~eI~~FF~~YK~leGK~v~v----~g~~d~e~A~kvI~ea~~~y~~~~~~~ 247 (318)
|+|++|+|++||+++. +++|+|||++||.++||++++ ++|.|+++|+++|++||++|+++...+
T Consensus 188 p~~~~i~di~Dv~~~~pg~l~~I~~fF~~YK~~eGK~~n~~~~~~~~~~~~~A~~vI~e~~~~y~~l~~~~ 258 (267)
T PLN02707 188 PKASLVNDVDDVEKHFPGTLTAIRDWFRDYKIPDGKPANKFGLDNKPMDKDYALKVIEETNEAWAKLVKRS 258 (267)
T ss_pred CcccccCChhHhhhhhhhHHHHHHHHHHHhcCCCCCceeeccccCCcCCHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999765 899999999999999999876 589999999999999999999988433
No 5
>PRK02230 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=3.2e-61 Score=430.64 Aligned_cols=159 Identities=44% Similarity=0.683 Sum_probs=156.0
Q ss_pred CeEEEEEEecCCCCceEEEeccCCCeEeeeecccccccccccCccccccCCCCCcceEEEecCccCCCeeEEEEEEeeeE
Q 040461 85 NVFNCVVEITKGSKVKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLVLMQEPVLPGCFLRARAIGLM 164 (318)
Q Consensus 85 ~~vnvVVEIPkgS~aKyEidk~~g~ik~DRvl~~~~~YP~NYGfIPqTl~gDGDPLDVlVLg~~p~~pG~Vv~vRvIGvL 164 (318)
+.|||||||||||++|||+|+++|.|++||++++++.||+|||||||||++||||||||||++.|+.||++++|||||+|
T Consensus 3 ~~vnvvIEIP~gs~~KyE~d~~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DGDPLDvlvl~~~~~~pG~vi~~r~IGvl 82 (184)
T PRK02230 3 KIIEVTIEIPKGSNIKYEYDRKTNKIVVDRILRGDFVYPANYGFIKEALDWDGDELDVLVYSDQKFLPGTVLNARIIGAM 82 (184)
T ss_pred cEEEEEEEECCCCCeeEEEecCCCCEEEEeecCCCCCCCcCcccCCCccCCCCCceEEEEECCCCCCCccEEEEEEEEEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeCCCCccEEEEEeCCCcccCCCCCCCCCChhhHHHHHHHHHHcccCCCcee-EeCeecCHHHHHHHHHHHHHHHhcc
Q 040461 165 PMIDQGEKDDKIIAVCADDPEYKHYTDIKELPPHRLTEIRRFFEDYKKNENKKV-AVNEFLPTSTAVEAIQYSMCVRPKL 243 (318)
Q Consensus 165 ~MiDeGE~D~KIIaV~~~DP~~~~i~dI~DLp~~~l~eI~~FF~~YK~leGK~v-~v~g~~d~e~A~kvI~ea~~~y~~~ 243 (318)
+|+|+||.|||||||+.+||+|++|+|++|||++++++|+|||++||.++||++ +++||.|+++|+++|++|+++|+++
T Consensus 83 ~m~D~ge~D~KIIaV~~~dp~~~~i~di~Dlp~~~l~~I~~fF~~YK~legk~~~~v~g~~~~~~A~~~I~~~~~~y~~~ 162 (184)
T PRK02230 83 KMIDDGETDTKLIAVHDDDYRLDHINSLKDLPQHWLDEIEYFFSNYKNWKRKGITKVKGFEDEKWALKEYKECVELMKKY 162 (184)
T ss_pred EeccCCCcCcEEEEEECCCCChhhcCChHHCCHHHHHHHHHHHHHhcCCCCCCeEEeCCccCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999998876 5999999999999999999999998
No 6
>cd00412 pyrophosphatase Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers.
Probab=100.00 E-value=3.7e-61 Score=420.09 Aligned_cols=154 Identities=55% Similarity=0.912 Sum_probs=150.7
Q ss_pred CeEEEEEEecCCCCceEEEeccCCCeEeeeecccccccccccCccccccCCCCCcceEEEecCccCCCeeEEEEEEeeeE
Q 040461 85 NVFNCVVEITKGSKVKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLVLMQEPVLPGCFLRARAIGLM 164 (318)
Q Consensus 85 ~~vnvVVEIPkgS~aKyEidk~~g~ik~DRvl~~~~~YP~NYGfIPqTl~gDGDPLDVlVLg~~p~~pG~Vv~vRvIGvL 164 (318)
+.+||||||||||++|||+|+++|.|++||++++++.||+|||||||||++||||||||||++.|+.||++++||+||+|
T Consensus 1 ~~v~vvIEIP~gs~~KyE~d~~~g~i~~DR~l~~~~~yP~nYGfiP~T~~~DgDPlDvlvl~~~~~~~G~~~~~r~iG~l 80 (155)
T cd00412 1 EVVNVVIEIPKGSNAKYEIDKETGPIKVDRFLYSSMGYPWNYGFIPQTLEDDGDPLDVLVIGEEPLFPGSVIRVRPLGVL 80 (155)
T ss_pred CEEEEEEEECCCCceeEEEccCCCceeeccccccCCcCcccccccCCcccCCCCceEEEEEcCCCCCCeeEEEEEEEEEE
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeCCCCccEEEEEeCCCcccCCCCCCCCCChhhHHHHHHHHHHcccCCC-ceeEeCeecCHHHHHHHHHHHHH
Q 040461 165 PMIDQGEKDDKIIAVCADDPEYKHYTDIKELPPHRLTEIRRFFEDYKKNEN-KKVAVNEFLPTSTAVEAIQYSMC 238 (318)
Q Consensus 165 ~MiDeGE~D~KIIaV~~~DP~~~~i~dI~DLp~~~l~eI~~FF~~YK~leG-K~v~v~g~~d~e~A~kvI~ea~~ 238 (318)
+|+|+||+|||||||+.+||+|++++|++|||++++++|+|||++||.++| |++++.+|.|+++|+++|++|++
T Consensus 81 ~m~D~ge~D~KiiaV~~~dp~~~~i~~l~Dl~~~~l~~I~~fF~~YK~le~~k~~~~~g~~~~~~A~~~I~~~~~ 155 (155)
T cd00412 81 KMIDEGETDWKVIAVPVDDPRYSHINDISDVPPHLLDEIKHFFEHYKDLEGKKEVKVAGWKDKEEALKIIKESIE 155 (155)
T ss_pred EeccCCCccceEEEeeCCCcccccCCChHHCCHHHHHHHHHHHHHhcccCCCCceEECcCcCHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999997 78999999999999999999974
No 7
>PF00719 Pyrophosphatase: Inorganic pyrophosphatase; InterPro: IPR008162 Inorganic pyrophosphatase (3.6.1.1 from EC) (PPase) [, ] is the enzyme responsible for the hydrolysis of pyrophosphate (PPi) which is formed principally as the product of the many biosynthetic reactions that utilise ATP. All known PPases require the presence of divalent metal cations, with magnesium conferring the highest activity. Among other residues, a lysine has been postulated to be part of or close to the active site. PPases have been sequenced from bacteria such as Escherichia coli (homohexamer), Bacillus PS3 (Thermophilic bacterium PS-3) and Thermus thermophilus, from the archaebacteria Thermoplasma acidophilum, from fungi (homodimer), from a plant, and from bovine retina. In yeast, a mitochondrial isoform of PPase has been characterised which seems to be involved in energy production and whose activity is stimulated by uncouplers of ATP synthesis. The sequences of PPases share some regions of similarities, among which is a region that contains three conserved aspartates that are involved in the binding of cations.; GO: 0000287 magnesium ion binding, 0004427 inorganic diphosphatase activity, 0006796 phosphate-containing compound metabolic process, 0005737 cytoplasm; PDB: 2UXS_A 1WCF_A 1SXV_A 3I4Q_A 2PRD_A 2IHP_B 1PYP_A 2IK7_A 2IK4_A 1E9G_A ....
Probab=100.00 E-value=8.6e-61 Score=417.19 Aligned_cols=155 Identities=54% Similarity=0.870 Sum_probs=147.2
Q ss_pred EEEEEecCCCCceEEEeccCCCeEeeeecccccccccccCccccccCCCCCcceEEEecCccCCCeeEEEEEEeeeEEee
Q 040461 88 NCVVEITKGSKVKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLVLMQEPVLPGCFLRARAIGLMPMI 167 (318)
Q Consensus 88 nvVVEIPkgS~aKyEidk~~g~ik~DRvl~~~~~YP~NYGfIPqTl~gDGDPLDVlVLg~~p~~pG~Vv~vRvIGvL~Mi 167 (318)
||||||||||++|||+|+++|.+++||++++++.||+|||||||||+||||||||+||++.|+.||++++||+||+|+|+
T Consensus 1 n~viEIP~gs~~KyE~d~~~~~~~idr~~~~~~~yP~NYGfIP~T~~~DGDPLDvlvl~~~~~~~G~v~~~r~iG~l~m~ 80 (156)
T PF00719_consen 1 NVVIEIPKGSRAKYEYDKETGLNPIDRPLYSSMPYPFNYGFIPQTLGGDGDPLDVLVLGSEPLPPGSVVRVRVIGVLKMI 80 (156)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEE-SSSBS-SSEEEEETTEEBTTSSCEEEEEESSS---TTEEEEEEEEEEEEEE
T ss_pred CEEEEECCCCCeeEEECCCCCCccceeccccCcCCccccccccceecCCCCeeeEEEEecccccceeEEEEeceEEEEEe
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCccEEEEEeCCCcccCCCCCCCCCChhhHHHHHHHHHHcccC-CCceeEeCeecCHHHHHHHHHHHHHHHhc
Q 040461 168 DQGEKDDKIIAVCADDPEYKHYTDIKELPPHRLTEIRRFFEDYKKN-ENKKVAVNEFLPTSTAVEAIQYSMCVRPK 242 (318)
Q Consensus 168 DeGE~D~KIIaV~~~DP~~~~i~dI~DLp~~~l~eI~~FF~~YK~l-eGK~v~v~g~~d~e~A~kvI~ea~~~y~~ 242 (318)
|+||+|||||||+.+||+|++++|++|++++.+++|+|||++||.+ +||++.+++|.|+++|+++|++|+++|++
T Consensus 81 D~ge~D~KiiaV~~~dp~~~~i~dl~dl~~~~~~~i~~fF~~YK~l~~~k~~~~~~~~~~~~A~~~i~~~~~~y~~ 156 (156)
T PF00719_consen 81 DDGERDDKIIAVPVDDPRYDDIKDLEDLPPHLLDEIEHFFRNYKDLEENKWVEVGGWEDAEEALKVIKEAHERYKK 156 (156)
T ss_dssp ETTEEEEEEEEEETTCGGGTTHHSGGGSSHHHHHHHHHHHHHTTTTSTTEEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred eCCCCceEEEEeccCCcccCCcCcHHHhChhHHHHHHHHHHHhcCcCCCCeEEeCCCcCHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999 79999999999999999999999999985
No 8
>COG0221 Ppa Inorganic pyrophosphatase [Energy production and conversion]
Probab=100.00 E-value=3.5e-59 Score=413.41 Aligned_cols=170 Identities=49% Similarity=0.809 Sum_probs=166.7
Q ss_pred CCCCCCCCCCCCCCeEEEEEEecCCCCceEEEeccCCCeEeeeecccccccccccCccccccCCCCCcceEEEecCccCC
Q 040461 72 HPWHDLEIGPGAPNVFNCVVEITKGSKVKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLVLMQEPVL 151 (318)
Q Consensus 72 spwHDIPl~~~~p~~vnvVVEIPkgS~aKyEidk~~g~ik~DRvl~~~~~YP~NYGfIPqTl~gDGDPLDVlVLg~~p~~ 151 (318)
|+||+||.+++. +.+||+||||+||++|||+|+++|.+.+||++++++.||+|||||||||++|||||||||++++|+.
T Consensus 1 ~~~~~~~~~~~~-~~i~vviEIP~~s~~KyE~dk~~~~~~vdR~l~~~~~YP~NYGfiP~Tl~~DGDPlDvlVi~~~p~~ 79 (171)
T COG0221 1 MDLHKIPAGPDD-EDINVVIEIPKGSNIKYEVDKETGRLLVDRPLKTPMGYPVNYGFIPNTLSDDGDPLDVLVIGEEPLA 79 (171)
T ss_pred CCccccCCCCCc-ceEEEEEeccCCCccceEEeeecCceeeeecCCCCCcCCccccccCCcccCCCCceEEEEEcCcCCC
Confidence 689999999988 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEeeeEEeeeCCCCccEEEEEeCCCcccCCCCCCCCCChhhHHHHHHHHHHcccCC-CceeEeCeecCHHHHH
Q 040461 152 PGCFLRARAIGLMPMIDQGEKDDKIIAVCADDPEYKHYTDIKELPPHRLTEIRRFFEDYKKNE-NKKVAVNEFLPTSTAV 230 (318)
Q Consensus 152 pG~Vv~vRvIGvL~MiDeGE~D~KIIaV~~~DP~~~~i~dI~DLp~~~l~eI~~FF~~YK~le-GK~v~v~g~~d~e~A~ 230 (318)
||++++||+||+|+|+|+||.|||||||+..||+|++|+|++|++.+++++|+|||++||.+| ||++++.||.|+++|+
T Consensus 80 pG~vi~~r~iG~l~m~D~~e~D~Kviav~~~dp~~~~i~di~d~~~~~~~~i~~ffe~yK~le~~k~~~~~gw~~~~~A~ 159 (171)
T COG0221 80 PGCVIQARPIGVLKMIDEGEKDDKVIAVPKLDPRYEHIKDISDLPEHLLDEIQHFFETYKDLEKGKWVKVEGWEDAEEAK 159 (171)
T ss_pred ceeEEEEEEEEEEEEeeCCCcceEEEEecCCCcchhhccchhHHHHHHHHHHHHHHHHHHhcCCCcEEEeccccCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 5899999999999999
Q ss_pred HHHHHHHHHHhc
Q 040461 231 EAIQYSMCVRPK 242 (318)
Q Consensus 231 kvI~ea~~~y~~ 242 (318)
++|++|+++|++
T Consensus 160 ~~i~~~~~~~k~ 171 (171)
T COG0221 160 KEIKEAIERYKE 171 (171)
T ss_pred HHHHHHHHHhhC
Confidence 999999999985
No 9
>KOG1626 consensus Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38 [Energy production and conversion]
Probab=100.00 E-value=1.3e-57 Score=423.42 Aligned_cols=203 Identities=35% Similarity=0.556 Sum_probs=180.5
Q ss_pred hcccCCCCCccceeeeeccc-CCcccCCCCCCCCCCCCCCeEEEEEEecCCCCceEEEecc-----------CCCeEeee
Q 040461 47 ANVSRSAPKLNERILSSLSR-RSVAAHPWHDLEIGPGAPNVFNCVVEITKGSKVKYELDKK-----------TGLIKVDR 114 (318)
Q Consensus 47 ~~~~~~~~~~~~Rv~~s~~~-~~~~~spwHDIPl~~~~p~~vnvVVEIPkgS~aKyEidk~-----------~g~ik~DR 114 (318)
..++++..+++||++ +.+ .+..+|||||||+..+...++||||||||++++|+|+.++ .|.++++|
T Consensus 5 t~e~g~~~s~~~rvy--~~~~~~~~iS~fhdipl~a~~~~~~nmvvEiPrwtnak~EIs~k~~~~pikqD~KkGklR~v~ 82 (279)
T KOG1626|consen 5 TVETGKKYSLDYRVY--FPKLNGRIISPFHDIPLAAHPWHDLNMVVEIPRWTNAKMEISKKEPFNPIKQDKKKGKLRFVR 82 (279)
T ss_pred eeeccccCCccceee--ecCCCCccccccccCccccCccccEeecccccceeeeEEEEeccCCCCcceeeccCCceEEEE
Confidence 356778889999998 445 4558999999999998789999999999999999999854 47788899
Q ss_pred ecccccccccccCccccccC------------CCCCcceEEEecCccCCCeeEEEEEEeeeEEeeeCCCCccEEEEEeCC
Q 040461 115 VLYSSVVYPHNYGFIPRTLC------------EDNDPLDVLVLMQEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCAD 182 (318)
Q Consensus 115 vl~~~~~YP~NYGfIPqTl~------------gDGDPLDVlVLg~~p~~pG~Vv~vRvIGvL~MiDeGE~D~KIIaV~~~ 182 (318)
.+|++..||||||||||||+ |||||||||+||+++..+|++++||+||+|+||||||+|||||||+++
T Consensus 83 n~fp~~gYiwNYGalPqTwedP~~~~~~t~~~gDnDPiDV~eIg~~~~~~G~vl~vKvLG~malIDeGE~DwKiIAIdvn 162 (279)
T KOG1626|consen 83 NLFPYKGYIWNYGALPQTWEDPNHVDPETKAKGDNDPIDVLEIGQEPVLPGCVLQVKVLGLMALIDEGETDWKIIAIDVN 162 (279)
T ss_pred ecccccccccccccCcccccCCCcccccccccCCCCcceeeEecccccccccEEEEEeeeeeecccCCCccceEEEEECC
Confidence 99999999999999999997 588999999999999999999999999999999999999999999999
Q ss_pred CcccCCCC---CCCCCChhhHHHHHHHHHHcccCCCce----eEeCeecCHHHHHHHHHHHHHHHhcccccccCCe
Q 040461 183 DPEYKHYT---DIKELPPHRLTEIRRFFEDYKKNENKK----VAVNEFLPTSTAVEAIQYSMCVRPKLSFNFEADW 251 (318)
Q Consensus 183 DP~~~~i~---dI~DLp~~~l~eI~~FF~~YK~leGK~----v~v~g~~d~e~A~kvI~ea~~~y~~~~~~~~~~~ 251 (318)
||.+..++ |++.++||+|+++++|||.||.++||. +.++++.+++.|.++|++||+.|+++...+..+.
T Consensus 163 DP~A~~~ndi~DV~~~~Pg~L~~tr~wFr~YKiPdGKpeN~faf~~~f~n~~~A~~iIk~t~d~w~~li~~~~~~~ 238 (279)
T KOG1626|consen 163 DPLASEYNDIEDVEKLFPGLLEATRRWFRDYKIPDGKPENKFAFVGDFLNKKFALDIIKETHDLWAALIKGKLSDT 238 (279)
T ss_pred CcchhhhccHHHHHHhCcchHHHHHHHHHHcCCCCCCCccchhhcccccChHHHHHHHHHHHHHHHHHHhcccccc
Confidence 99555555 555578999999999999999777765 5678999999999999999999999997776433
No 10
>KOG1626 consensus Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38 [Energy production and conversion]
Probab=95.04 E-value=0.022 Score=54.86 Aligned_cols=114 Identities=25% Similarity=0.239 Sum_probs=75.2
Q ss_pred cccCCCCCccceeeeecccCCcccCCCCCCCCCCCCCCeEEEEEEec-CCCCceEEE---------ecc----------C
Q 040461 48 NVSRSAPKLNERILSSLSRRSVAAHPWHDLEIGPGAPNVFNCVVEIT-KGSKVKYEL---------DKK----------T 107 (318)
Q Consensus 48 ~~~~~~~~~~~Rv~~s~~~~~~~~spwHDIPl~~~~p~~vnvVVEIP-kgS~aKyEi---------dk~----------~ 107 (318)
.-+.....++.|++|+|......+++||++....+.|...|+++||. +++.++++. +.. -
T Consensus 15 ~~rvy~~~~~~~~iS~fhdipl~a~~~~~~nmvvEiPrwtnak~EIs~k~~~~pikqD~KkGklR~v~n~fp~~gYiwNY 94 (279)
T KOG1626|consen 15 DYRVYFPKLNGRIISPFHDIPLAAHPWHDLNMVVEIPRWTNAKMEISKKEPFNPIKQDKKKGKLRFVRNLFPYKGYIWNY 94 (279)
T ss_pred cceeeecCCCCccccccccCccccCccccEeecccccceeeeEEEEeccCCCCcceeeccCCceEEEEeccccccccccc
Confidence 34555778899999999999999999999999999999999999999 788887763 321 1
Q ss_pred CCeEee--------ee-cccccccccccCccccccCCCCCcceEEEecCccCCC-eeEEEEEEee
Q 040461 108 GLIKVD--------RV-LYSSVVYPHNYGFIPRTLCEDNDPLDVLVLMQEPVLP-GCFLRARAIG 162 (318)
Q Consensus 108 g~ik~D--------Rv-l~~~~~YP~NYGfIPqTl~gDGDPLDVlVLg~~p~~p-G~Vv~vRvIG 162 (318)
|.|-+- +. -.-+-.=|-+==-|=|+.+.=|+=|-|=+||.-++.- |+ ..=|+|.
T Consensus 95 GalPqTwedP~~~~~~t~~~gDnDPiDV~eIg~~~~~~G~vl~vKvLG~malIDeGE-~DwKiIA 158 (279)
T KOG1626|consen 95 GALPQTWEDPNHVDPETKAKGDNDPIDVLEIGQEPVLPGCVLQVKVLGLMALIDEGE-TDWKIIA 158 (279)
T ss_pred ccCcccccCCCcccccccccCCCCcceeeEecccccccccEEEEEeeeeeecccCCC-ccceEEE
Confidence 322211 00 0001112333335556666777777787887655432 43 3345553
No 11
>PF13953 PapC_C: PapC C-terminal domain; PDB: 3L48_E 2XET_A 3RFZ_E 2KT6_A.
Probab=50.85 E-value=23 Score=26.72 Aligned_cols=31 Identities=19% Similarity=0.516 Sum_probs=23.0
Q ss_pred EEEEeeCCccceeeecccCC---eeeeeeccccc
Q 040461 253 ILFVYDNFQPTELFFNWQGP---LCRVHYAFPEA 283 (318)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 283 (318)
.+|+-.-=....|...|.+- .|+++|.+|+.
T Consensus 33 ~vyl~~~~~~~~L~V~w~~~~~~~C~~~~~~~~~ 66 (68)
T PF13953_consen 33 QVYLSGLPPKGTLTVKWGDGANQQCQIDYPLPES 66 (68)
T ss_dssp EEEEEEE-TCEEEEEESTSCTTSEEEEEEET-CG
T ss_pred EEEEECCCCCcEEEEEECCCCCCeEEEEecCCCC
Confidence 34555555678899999888 99999999974
No 12
>PF08250 Sperm_act_pep: Sperm-activating peptides; InterPro: IPR013254 The sperm-activating peptides (SAPs) are isolated in egg-conditioned media (egg jelly) of sea urchins. SAPs have several effects on sea urchin spermatozoa: stimulate sperm respiration and motility through intracellular alkalinization, transient elevation of cAMP, cGMP and Ca2+ levels in sperm cells [, ].
Probab=41.51 E-value=10 Score=20.05 Aligned_cols=8 Identities=75% Similarity=1.630 Sum_probs=6.6
Q ss_pred EEecCCce
Q 040461 294 FQLGGGGM 301 (318)
Q Consensus 294 ~~~~~~~~ 301 (318)
|.|||||.
T Consensus 2 f~l~GgGV 9 (10)
T PF08250_consen 2 FSLGGGGV 9 (10)
T ss_pred cccccCcC
Confidence 77999985
No 13
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=40.83 E-value=34 Score=29.02 Aligned_cols=44 Identities=27% Similarity=0.545 Sum_probs=36.0
Q ss_pred cCCeeeeeeccccccCCCCCCcEEEEecCCce-eeeeccceeeeEEe
Q 040461 270 QGPLCRVHYAFPEAIGEPYIPPIVFQLGGGGM-EIHHLNKSFHLCYL 315 (318)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 315 (318)
+|---+++-.||.. -|+.||.|+-.-.-+. -+.|++..-.|||+
T Consensus 34 ~~~~~~l~l~~p~~--FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~ 78 (133)
T PF14461_consen 34 GGGPFPLRLVFPDD--FPYLPPRVYLEDPKQFPLLPHVESDGKLCLL 78 (133)
T ss_pred CCeEEEEEEEECCc--ccCcCCEEEecCccccCccCeEcCCCeEEEe
Confidence 45556788888888 8999999998865543 79999999999996
No 14
>COG1094 Predicted RNA-binding protein (contains KH domains) [General function prediction only]
Probab=31.33 E-value=1e+02 Score=28.98 Aligned_cols=111 Identities=26% Similarity=0.316 Sum_probs=79.3
Q ss_pred CCCceEEEeccCCCeEeeeeccccccc----------ccccCccccc---cCCCCCcceEEEecCccCCCee---EEEEE
Q 040461 96 GSKVKYELDKKTGLIKVDRVLYSSVVY----------PHNYGFIPRT---LCEDNDPLDVLVLMQEPVLPGC---FLRAR 159 (318)
Q Consensus 96 gS~aKyEidk~~g~ik~DRvl~~~~~Y----------P~NYGfIPqT---l~gDGDPLDVlVLg~~p~~pG~---Vv~vR 159 (318)
-...|.++|.++|.+.+...-.+..++ -..=||=|+- +-.|+==|||+.|++-...++. .++.|
T Consensus 36 ~~~~~~~iD~~~~~V~i~~~~~t~Dp~~~~ka~d~VkAIgrGF~pe~A~~LL~d~~~levIdi~~~~~~~~~~l~R~kgR 115 (194)
T COG1094 36 KTGVKLRIDSKTGSVTIRTTRKTEDPLALLKARDVVKAIGRGFPPEKALKLLEDDYYLEVIDLKDVVTLSGDHLRRIKGR 115 (194)
T ss_pred hcCeEEEEECCCCeEEEEecCCCCChHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEEEEEEHHHhccCchhhhhHhhce
Confidence 345788888888887776542111111 0245665553 4578889999999986555555 45688
Q ss_pred EeeeEEeeeCCCCccEEEEEeCCCcccCCCCCCCCCChhhHHHHHHHHHHcccCCCceeEe-CeecCHHHHHHHHHHHHH
Q 040461 160 AIGLMPMIDQGEKDDKIIAVCADDPEYKHYTDIKELPPHRLTEIRRFFEDYKKNENKKVAV-NEFLPTSTAVEAIQYSMC 238 (318)
Q Consensus 160 vIGvL~MiDeGE~D~KIIaV~~~DP~~~~i~dI~DLp~~~l~eI~~FF~~YK~leGK~v~v-~g~~d~e~A~kvI~ea~~ 238 (318)
+|| .+ -..+..|++.=+.|--.-|+.|.+ +++.+.+.|+++|+.+++
T Consensus 116 IIG------~~--------------------------GkTr~~IE~lt~~~I~V~g~tVaiiG~~~~v~iAr~AVemli~ 163 (194)
T COG1094 116 IIG------RE--------------------------GKTRRAIEELTGVYISVYGKTVAIIGGFEQVEIAREAVEMLIN 163 (194)
T ss_pred eeC------CC--------------------------chHHHHHHHHhCCeEEEeCcEEEEecChhhhHHHHHHHHHHHc
Confidence 888 21 246788999999999899999875 679999999999998875
No 15
>PF07177 Neuralized: Neuralized; InterPro: IPR006573 NEUZ is a domain of unknown function found in neuralized proteins, i.e. proteins involved in the specification of the neuroblast during cellular differentiation. ; PDB: 2YUE_A 2E63_A.
Probab=28.80 E-value=52 Score=25.47 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=15.7
Q ss_pred eEEEecCccCCCeeEEEEEEee
Q 040461 141 DVLVLMQEPVLPGCFLRARAIG 162 (318)
Q Consensus 141 DVlVLg~~p~~pG~Vv~vRvIG 162 (318)
..+|++++|+.+|+.+.+|+.-
T Consensus 30 ~giVFS~rPl~~~E~~~v~I~~ 51 (69)
T PF07177_consen 30 NGIVFSSRPLRIGEKFEVRIDE 51 (69)
T ss_dssp S-EEEESS-B-TT-EEEEEEEE
T ss_pred ceEEEecCCccCCCEEEEEEEe
Confidence 4689999999999999999853
No 16
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=28.70 E-value=1.7e+02 Score=23.48 Aligned_cols=45 Identities=16% Similarity=0.286 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHcccCCCceeEeCeecCHHHHHHHHHHHHHHHhcc
Q 040461 199 RLTEIRRFFEDYKKNENKKVAVNEFLPTSTAVEAIQYSMCVRPKL 243 (318)
Q Consensus 199 ~l~eI~~FF~~YK~leGK~v~v~g~~d~e~A~kvI~ea~~~y~~~ 243 (318)
.++++++|++.|=.+.+-.+.+.|=.+.+++.+.|++....+...
T Consensus 3 t~e~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~~~~l~~~ 47 (184)
T PF05193_consen 3 TLEDLRAFYKKFYRPSNMTLVIVGDIDPDELEKLIEKYFGSLPKS 47 (184)
T ss_dssp -HHHHHHHHHHHSSGGGEEEEEEESSGHHHHHHHHHHHHTTSSHS
T ss_pred CHHHHHHHHHHhcCccceEEEEEcCccHHHHHHHHHhhhhhhccc
Confidence 368899999999988876677777788889999999888777643
No 17
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=28.63 E-value=41 Score=30.21 Aligned_cols=29 Identities=34% Similarity=0.603 Sum_probs=16.3
Q ss_pred EEEecCCCCceEEEeccCCCeEeeeeccccccccccc
Q 040461 90 VVEITKGSKVKYELDKKTGLIKVDRVLYSSVVYPHNY 126 (318)
Q Consensus 90 VVEIPkgS~aKyEidk~~g~ik~DRvl~~~~~YP~NY 126 (318)
|+=|||||+..|.-. |....-...||+|+
T Consensus 122 vi~iPkGs~I~fst~--------~~a~~~Yv~yPa~W 150 (152)
T PF06249_consen 122 VIFIPKGSTITFSTP--------DYARFFYVTYPANW 150 (152)
T ss_dssp EEEE-TT-EEEEEEE--------EEEEEEEEEESTT-
T ss_pred EEEECCCCEEEEecC--------CCEEEEEEECCCcc
Confidence 344888888887643 33334456799986
No 18
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=28.28 E-value=40 Score=25.90 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=20.6
Q ss_pred cCccccccCCCCCcceEEEecCccCCCeeEEEEEEeee
Q 040461 126 YGFIPRTLCEDNDPLDVLVLMQEPVLPGCFLRARAIGL 163 (318)
Q Consensus 126 YGfIPqTl~gDGDPLDVlVLg~~p~~pG~Vv~vRvIGv 163 (318)
=||||.+--.+. ..+.+|+.+.|+++.+
T Consensus 30 ~Gfl~~~~~~~~----------~~~~~Gq~v~~~V~~v 57 (74)
T cd05694 30 TGFLPKKDAGNF----------SKLKVGQLLLCVVEKV 57 (74)
T ss_pred EEEEEHHHCCcc----------cccCCCCEEEEEEEEE
Confidence 377777754443 5688999999999863
No 19
>smart00588 NEUZ domain in neuralized proteins.
Probab=27.11 E-value=81 Score=26.85 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=30.9
Q ss_pred CCCcceEEEecCccCCCeeEEEEEEeeeEEeeeCCCCccEEEEEeCCCccc
Q 040461 136 DNDPLDVLVLMQEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCADDPEY 186 (318)
Q Consensus 136 DGDPLDVlVLg~~p~~pG~Vv~vRvIGvL~MiDeGE~D~KIIaV~~~DP~~ 186 (318)
+.+.=+.+|.+++|+.+|+.+.+|+.-.-..- .| -=-+++-..||..
T Consensus 26 ~~~f~~givFS~rPl~~~E~~~v~i~~~~~~w-~G---~l~~G~Ts~dP~~ 72 (123)
T smart00588 26 ASDFCNALVFSARPLRINELFEVKIEKVVRKW-SG---ALRFGVTTCDPAT 72 (123)
T ss_pred cCCcCceEEecCCCCcCCCEEEEEEEEecCCc-cC---ceEEEEecCCccc
Confidence 34466889999999999999999987432110 00 1124666678843
No 20
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=25.10 E-value=3.2e+02 Score=27.15 Aligned_cols=66 Identities=23% Similarity=0.238 Sum_probs=39.3
Q ss_pred CccEEEEEeCCCcccCCCCC----CCCCChhh-HHHHHHHHHHcccCC----------Cc--eeEeCeecCHHHHHHHHH
Q 040461 172 KDDKIIAVCADDPEYKHYTD----IKELPPHR-LTEIRRFFEDYKKNE----------NK--KVAVNEFLPTSTAVEAIQ 234 (318)
Q Consensus 172 ~D~KIIaV~~~DP~~~~i~d----I~DLp~~~-l~eI~~FF~~YK~le----------GK--~v~v~g~~d~e~A~kvI~ 234 (318)
...|-|-|....|....+.+ +..||..+ -++|++.|..|-... |+ -+....|.+.++|.++|+
T Consensus 174 l~gr~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~ 253 (346)
T TIGR01659 174 VRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAIS 253 (346)
T ss_pred cCCceeeeecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHH
Confidence 35566666544332222222 23455543 358899999886432 22 355778999999998887
Q ss_pred HHH
Q 040461 235 YSM 237 (318)
Q Consensus 235 ea~ 237 (318)
...
T Consensus 254 ~ln 256 (346)
T TIGR01659 254 ALN 256 (346)
T ss_pred HhC
Confidence 643
No 21
>KOG1110 consensus Putative steroid membrane receptor Hpr6.6/25-Dx [General function prediction only]
Probab=23.83 E-value=39 Score=31.46 Aligned_cols=37 Identities=16% Similarity=0.252 Sum_probs=27.7
Q ss_pred EEEEEeCCCcccCCCCCCCCCChhhHHHHHHHHHHccc
Q 040461 175 KIIAVCADDPEYKHYTDIKELPPHRLTEIRRFFEDYKK 212 (318)
Q Consensus 175 KIIaV~~~DP~~~~i~dI~DLp~~~l~eI~~FF~~YK~ 212 (318)
|.||...-|. -+.+.|++||.+..++.+.+|...||.
T Consensus 109 R~La~~s~d~-~d~~ddlsdL~a~e~eal~eWE~~fk~ 145 (183)
T KOG1110|consen 109 RGLAKMSFDL-SDETDDLSDLTAEELEALNEWETKFKA 145 (183)
T ss_pred HHHHhcccch-hhccccccccCHHHHHHHHHHHHHHhh
Confidence 3344433333 456778999999999999999999984
No 22
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=23.43 E-value=33 Score=33.09 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=23.2
Q ss_pred cccCCCCCCCCCChhhHHHHHHHHHHc
Q 040461 184 PEYKHYTDIKELPPHRLTEIRRFFEDY 210 (318)
Q Consensus 184 P~~~~i~dI~DLp~~~l~eI~~FF~~Y 210 (318)
|-|--++|+++||.-+-+.+++||+.-
T Consensus 237 pYy~~~~~~~~lp~~l~~~lrqwf~~~ 263 (266)
T cd01460 237 PYYVIVRDLNQLPSVLSDALRQWFELV 263 (266)
T ss_pred CeEEEecChhHhHHHHHHHHHHHHHHH
Confidence 556778999999999999999999853
No 23
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=21.59 E-value=95 Score=22.15 Aligned_cols=43 Identities=30% Similarity=0.494 Sum_probs=29.5
Q ss_pred CChh-hHHHHHHHHHHcccCC------C-----ceeEeCeecCHHHHHHHHHHHH
Q 040461 195 LPPH-RLTEIRRFFEDYKKNE------N-----KKVAVNEFLPTSTAVEAIQYSM 237 (318)
Q Consensus 195 Lp~~-~l~eI~~FF~~YK~le------G-----K~v~v~g~~d~e~A~kvI~ea~ 237 (318)
||+. ..++|+++|..|-..+ + +......+.+.++|.++++...
T Consensus 6 lp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~ 60 (70)
T PF14259_consen 6 LPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLN 60 (70)
T ss_dssp STTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCC
Confidence 4443 4578999999984321 1 3455678999999999888754
No 24
>PRK15196 secreted effector protein PipB2; Provisional
Probab=21.12 E-value=72 Score=31.85 Aligned_cols=85 Identities=21% Similarity=0.269 Sum_probs=51.2
Q ss_pred ChhhHHHHHHHHHHcccCCCceeEeCeecCHHHHHHHHHHHHHHHhcccccccCCeeEEEEeeCCccceeeec-ccCCee
Q 040461 196 PPHRLTEIRRFFEDYKKNENKKVAVNEFLPTSTAVEAIQYSMCVRPKLSFNFEADWAILFVYDNFQPTELFFN-WQGPLC 274 (318)
Q Consensus 196 p~~~l~eI~~FF~~YK~leGK~v~v~g~~d~e~A~kvI~ea~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 274 (318)
|+++++-|.+|| +..|-.-. +. ..-.++.+.+..+... ..+-++-+-|.+++++ ..| |
T Consensus 30 ~~~~~e~~~~~f----t~~~~~r~-~~-~~~~~~~~~~~~~l~~-------------~~~~~~~~~~~~i~~~~~~g--~ 88 (350)
T PRK15196 30 PKTILEYIINFF----TCGGIRRR-NE-TQYQELIETMAETLKS-------------TMPDRGAPLPENIILDDMDG--C 88 (350)
T ss_pred hHHHHHHHHHhh----cccchhhh-hh-hhHHHHHHHHHHHHHH-------------hhcCCCCCChHHeeeeccCC--e
Confidence 678888888888 55542211 11 1223333444444331 1223456779999999 887 9
Q ss_pred eeeeccccccCCCCCCcEEEEecCCcee
Q 040461 275 RVHYAFPEAIGEPYIPPIVFQLGGGGME 302 (318)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
.|-+..|++- +--=|-||=+-+||+++
T Consensus 89 ~~~~~~~~~~-~~~~~v~v~v~~~~~~~ 115 (350)
T PRK15196 89 RVEFNLPGEN-NEAGQVIVRVSKGDHSE 115 (350)
T ss_pred EEEecCCCcc-ccCCcEEEEEecCCCcC
Confidence 9999999863 33335667777777654
Done!