Query 040461
Match_columns 318
No_of_seqs 166 out of 1056
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 13:50:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040461.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040461hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q46_A TT-ippase; inorganic py 100.0 1E-71 3.6E-76 494.3 15.8 178 71-248 1-178 (178)
2 2prd_A Pyrophosphate phosphohy 100.0 4.4E-69 1.5E-73 475.9 20.1 171 72-242 1-174 (174)
3 3gvf_A Inorganic pyrophosphata 100.0 3.4E-69 1.2E-73 484.6 19.3 178 65-242 15-196 (196)
4 3fq3_A Inorganic pyrophosphata 100.0 7.9E-69 2.7E-73 482.5 19.7 178 65-242 15-196 (197)
5 3ld3_A Inorganic pyrophosphata 100.0 3.4E-68 1.2E-72 479.0 19.2 178 65-242 15-196 (199)
6 2au7_A Inorganic pyrophosphata 100.0 1.4E-67 4.7E-72 467.0 19.7 170 73-242 1-174 (175)
7 2bqx_A Inorganic pyrophosphata 100.0 2.5E-67 8.5E-72 464.3 18.1 170 72-242 1-173 (173)
8 3d53_A Inorganic pyrophosphata 100.0 8.6E-67 2.9E-71 461.2 18.7 167 72-239 2-172 (173)
9 3tr4_A Inorganic pyrophosphata 100.0 1.9E-66 6.4E-71 460.8 18.2 167 75-242 6-176 (178)
10 1e9g_A Ppase, inorganic pyroph 100.0 3.7E-67 1.3E-71 493.5 11.5 196 48-245 5-231 (286)
11 1qez_A Ppase, S-ppase, protein 100.0 1.4E-65 4.9E-70 453.3 19.4 167 76-242 2-171 (173)
12 1sxv_A Inorganic pyrophosphata 100.0 3.3E-64 1.1E-68 444.5 15.9 159 85-243 11-170 (172)
13 2l76_A Nfatc2-interacting prot 35.3 46 0.0016 26.7 4.5 64 81-147 16-94 (95)
14 2xet_A CAF1A usher, F1 capsule 34.7 38 0.0013 25.6 3.8 34 251-284 37-73 (89)
15 2kt5_A RNA and export factor-b 32.3 1.4E+02 0.0047 22.7 6.7 65 199-291 48-123 (124)
16 3r3q_A Suppressor protein STP2 31.8 64 0.0022 27.7 5.2 69 223-297 27-104 (162)
17 3gwb_A Peptidase M16 inactive 29.9 1.8E+02 0.0061 26.0 8.0 52 191-242 172-223 (434)
18 3obq_A Tumor susceptibility ge 27.0 84 0.0029 26.5 5.0 73 223-304 19-99 (146)
19 1why_A Hypothetical protein ri 22.6 69 0.0024 23.2 3.3 38 199-236 30-73 (97)
20 3bs9_A Nucleolysin TIA-1 isofo 22.1 98 0.0034 21.6 3.9 38 199-236 19-68 (87)
21 2ku7_A MLL1 PHD3-CYP33 RRM chi 22.0 1.1E+02 0.0038 23.3 4.5 36 200-235 77-124 (140)
22 2dgt_A RNA-binding protein 30; 21.4 1.2E+02 0.0042 21.6 4.4 38 199-236 23-64 (92)
23 1wf1_A RNA-binding protein RAL 21.4 73 0.0025 23.7 3.2 37 199-235 41-81 (110)
24 2yue_A Protein neuralized; str 20.8 86 0.0029 26.9 3.9 46 141-197 36-84 (168)
25 2cqh_A IGF-II mRNA-binding pro 20.4 1E+02 0.0035 22.0 3.8 38 199-236 21-64 (93)
26 2cqb_A Peptidyl-prolyl CIS-tra 20.2 1E+02 0.0034 22.4 3.7 37 199-235 25-73 (102)
No 1
>3q46_A TT-ippase; inorganic pyrophosphatase, hydrolase; HET: EPE; 0.99A {Thermococcus thioreducens} SCOP: b.40.5.1 PDB: 3r6e_A* 3q3l_A 3i98_A 3q4w_A 3q9m_A* 3r5u_A 3r5v_A* 3q5v_A* 1ude_A 1twl_A
Probab=100.00 E-value=1e-71 Score=494.30 Aligned_cols=178 Identities=42% Similarity=0.733 Sum_probs=172.2
Q ss_pred cCCCCCCCCCCCCCCeEEEEEEecCCCCceEEEeccCCCeEeeeecccccccccccCccccccCCCCCcceEEEecCccC
Q 040461 71 AHPWHDLEIGPGAPNVFNCVVEITKGSKVKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLVLMQEPV 150 (318)
Q Consensus 71 ~spwHDIPl~~~~p~~vnvVVEIPkgS~aKyEidk~~g~ik~DRvl~~~~~YP~NYGfIPqTl~gDGDPLDVlVLg~~p~ 150 (318)
+|||||||++.+.|+.|||||||||||++|||+|+++|.|++||++++++.||+|||||||||++||||||||||++.|+
T Consensus 1 ~spwhdi~~g~~~p~~~nvvIEIP~gs~~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~~~~ 80 (178)
T 3q46_A 1 MNPFHELEPGPEVPEVVYALIEIPKGSRNKYELDKATGLLKLDRVLYSPFFYPVDYGIIPQTWYDDGDPFDIMVIMREPV 80 (178)
T ss_dssp CCTTTTSCSCSBTTTBCCCEEEECTTCCEEEEECTTTSCEEEEEECSSSCCCSSEEEECTTCCBTTTBCCEEEECCSSCC
T ss_pred CCccccCCCCCCCCCEEEEEEEECCCCCeeEEECCCCCCEEEeecccCCCCCCcccccCCCccCCCCCeeEEEEEcCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEEEeeeEEeeeCCCCccEEEEEeCCCcccCCCCCCCCCChhhHHHHHHHHHHcccCCCceeEeCeecCHHHHH
Q 040461 151 LPGCFLRARAIGLMPMIDQGEKDDKIIAVCADDPEYKHYTDIKELPPHRLTEIRRFFEDYKKNENKKVAVNEFLPTSTAV 230 (318)
Q Consensus 151 ~pG~Vv~vRvIGvL~MiDeGE~D~KIIaV~~~DP~~~~i~dI~DLp~~~l~eI~~FF~~YK~leGK~v~v~g~~d~e~A~ 230 (318)
.||++++|||||+|+|+|+||+|||||||+++||+|++++|++|||++++++|+|||++||.+|||++++.+|.|+++|+
T Consensus 81 ~pG~vi~~r~iGvl~m~Dege~D~KiiaV~~~Dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~legK~v~~~g~~~~~~A~ 160 (178)
T 3q46_A 81 YPLTIIEARPIGIMKMEDSGDKDWKVLAVPVEDPYFNDWKDISDVPKAFLDEIAHFFQRYKELQGKTTKIEGWGNAEEAK 160 (178)
T ss_dssp CTTCBC-CEEEEEEEEEETTEECCEEEEECTTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTGGGTCCEEEEEEEEHHHHH
T ss_pred CCceEEEEEEEEEEEeecCCCccceEEEeeCCCccccccCChHHCCHHHHHHHHHHHHHhcCcCCCceEeccccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccccc
Q 040461 231 EAIQYSMCVRPKLSFNFE 248 (318)
Q Consensus 231 kvI~ea~~~y~~~~~~~~ 248 (318)
++|++|+++|+++-.+.|
T Consensus 161 ~~I~~~~~~~~~~~~~~~ 178 (178)
T 3q46_A 161 REILRAIEMYKEKFGKEE 178 (178)
T ss_dssp HHHHHHHHHHHHC-CCCC
T ss_pred HHHHHHHHHHHHHhccCC
Confidence 999999999998876543
No 2
>2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus} SCOP: b.40.5.1
Probab=100.00 E-value=4.4e-69 Score=475.90 Aligned_cols=171 Identities=41% Similarity=0.659 Sum_probs=168.8
Q ss_pred CCCCCCCCCCCCCCeEEEEEEecCCCCceEEEeccCCCeEeeeecccccccccccCccccccCCCCCcceEEEecCccCC
Q 040461 72 HPWHDLEIGPGAPNVFNCVVEITKGSKVKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLVLMQEPVL 151 (318)
Q Consensus 72 spwHDIPl~~~~p~~vnvVVEIPkgS~aKyEidk~~g~ik~DRvl~~~~~YP~NYGfIPqTl~gDGDPLDVlVLg~~p~~ 151 (318)
||||+||++++.|+.|||||||||||++|||+|+++|.+++||++++++.||+|||||||||++||||||||||++.|+.
T Consensus 1 ~~~h~ip~~~~~p~~~nvvIEIP~gs~~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~~p~~ 80 (174)
T 2prd_A 1 ANLKSLPVGDKAPEVVHMVIEVPRGSGNKYEYDPDLGAIKLDRVLPGAQFYPGDYGFIPSTLAEDGDPLDGLVLSTYPLL 80 (174)
T ss_dssp CCGGGSCCCTTTTTEEEEEEEECTTCCEEEEEETTTTEEEEEEECSSSCCCSSEEEECSSCCCTTSSCCEEEEECSSCCC
T ss_pred CCcccCCCCCCCCCEEEEEEEecCCCCeEEEEecCCCCEEEeeecCCCCcCCcccccccCcccCCCCceEEEEECCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEeeeEEeeeCCCCccEEEEEeCCCcccCCCCCCCCCChhhHHHHHHHHHHcccCC---CceeEeCeecCHHH
Q 040461 152 PGCFLRARAIGLMPMIDQGEKDDKIIAVCADDPEYKHYTDIKELPPHRLTEIRRFFEDYKKNE---NKKVAVNEFLPTST 228 (318)
Q Consensus 152 pG~Vv~vRvIGvL~MiDeGE~D~KIIaV~~~DP~~~~i~dI~DLp~~~l~eI~~FF~~YK~le---GK~v~v~g~~d~e~ 228 (318)
||++++|||||+|+|+|+||.|||||||+++||+|++++|++|||++++++|+|||++||.+| ||++++++|.|+++
T Consensus 81 pG~vi~~r~iGvl~m~Dege~D~KiiaV~~~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le~k~gK~v~~~gw~~~~~ 160 (174)
T 2prd_A 81 PGVVVEVRVVGLLLMEDEKGGDAKVIGVVAEDQRLDHIQDIGDVPEGVKQEIQHFFETYKALEAKKGKWVKVTGWRDRKA 160 (174)
T ss_dssp TTCEEEEEEEEEEEEEESSCEEEEEEEEETTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTGGGGGGTCCEEEEEEECHHH
T ss_pred CceEEEEEEEEEEEEecCCCCccEEEEEECCCcchhhcCChHHCCHHHHHHHHHHHHHhcCccccCCCceEECcccCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 040461 229 AVEAIQYSMCVRPK 242 (318)
Q Consensus 229 A~kvI~ea~~~y~~ 242 (318)
|+++|++|+++|++
T Consensus 161 A~~~I~~~~~~~~~ 174 (174)
T 2prd_A 161 ALEEVRACIARYKG 174 (174)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999975
No 3
>3gvf_A Inorganic pyrophosphatase; structural genomics, hydrolase, S structural genomics center for infectious disease, ssgcid; HET: PGE; 1.75A {Burkholderia pseudomallei 1710B} PDB: 3d63_A* 3eiy_A 3ej0_A* 3ej2_A* 3eiz_A*
Probab=100.00 E-value=3.4e-69 Score=484.57 Aligned_cols=178 Identities=37% Similarity=0.606 Sum_probs=167.8
Q ss_pred ccCCcccCCCCCCCCCCCCCCeEEEEEEecCCCC-ceEEEeccCCCeEeeeecccccccccccCccccccCCCCCcceEE
Q 040461 65 SRRSVAAHPWHDLEIGPGAPNVFNCVVEITKGSK-VKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVL 143 (318)
Q Consensus 65 ~~~~~~~spwHDIPl~~~~p~~vnvVVEIPkgS~-aKyEidk~~g~ik~DRvl~~~~~YP~NYGfIPqTl~gDGDPLDVl 143 (318)
+.+|+++|+||+||++++.|+.|||||||||||+ +|||+|+++|.|++||++++++.||+|||||||||++||||||||
T Consensus 15 ~~~g~~~m~~~~i~~g~~~p~~vnvvIEIP~gs~~~KyE~dk~~g~i~~DR~l~s~~~YP~NYGfIP~Tl~~DgDPLDvl 94 (196)
T 3gvf_A 15 QTQGPGSMSFSNVPAGKDLPQDFNVIIEIPAQSEPVKYEADKALGLLVVDRFIGTGMRYPVNYGFIPQTLSGDGDPVDVL 94 (196)
T ss_dssp --------CGGGSCSCSBTTTBEEEEEEECTTCCSEEEEEETTTTEEEEEEECTTCCCCSSEEEECTTCCCTTSSCCEEE
T ss_pred cccCCCCCchhhCCCCCCCCCEEEEEEEecCCCCceEEEEecCCCCEEEEeEcCCCccCCcccccccCccCCCCCceEEE
Confidence 4578999999999999999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred EecCccCCCeeEEEEEEeeeEEeeeCCCCccEEEEEeCCC--cccCCCCCCCCCChhhHHHHHHHHHHcccCC-CceeEe
Q 040461 144 VLMQEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCADD--PEYKHYTDIKELPPHRLTEIRRFFEDYKKNE-NKKVAV 220 (318)
Q Consensus 144 VLg~~p~~pG~Vv~vRvIGvL~MiDeGE~D~KIIaV~~~D--P~~~~i~dI~DLp~~~l~eI~~FF~~YK~le-GK~v~v 220 (318)
||+++|+.||++++|||||+|+|+|+||.|||||||+++| |+|++|+|++|||++++++|+|||++||.+| ||++++
T Consensus 95 vl~~~p~~pG~vi~~r~iGvl~M~Dege~D~KIIaVp~~d~~p~~~~i~di~dlp~~~l~~I~~fF~~YK~le~gK~v~v 174 (196)
T 3gvf_A 95 VITPFPLLAGSVVRARALGMLKMTDESGVDAKLVAVPHDKVCPMTANLKSIDDVPAYLKDQIKHFFEQYKALEKGKWVKV 174 (196)
T ss_dssp ECCSSCCCTTCEEEEEEEEEEEEEETTEEEEEEEEEECTTTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEE
T ss_pred EecCCccCCeeEEEEEEEEEEEEecCCCcccEEEEEecCCcCchhhhcCchhhCCHHHHHHHHHHHHHhcCcCCCCeEEe
Confidence 9999999999999999999999999999999999999998 9999999999999999999999999999999 999999
Q ss_pred CeecCHHHHHHHHHHHHHHHhc
Q 040461 221 NEFLPTSTAVEAIQYSMCVRPK 242 (318)
Q Consensus 221 ~g~~d~e~A~kvI~ea~~~y~~ 242 (318)
.+|.|+++|+++|++|+++|++
T Consensus 175 ~gw~~~~~A~~~I~~~~~~y~~ 196 (196)
T 3gvf_A 175 EGWDGIDAAHKEITDGVANFKK 196 (196)
T ss_dssp EEEECHHHHHHHHHHHHHHHTC
T ss_pred ccCcCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999975
No 4
>3fq3_A Inorganic pyrophosphatase:bacterial/archaeal INOR pyrophosphatase; ssgcid, inorganic phosphatase; 1.90A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3sw5_A
Probab=100.00 E-value=7.9e-69 Score=482.51 Aligned_cols=178 Identities=37% Similarity=0.664 Sum_probs=167.7
Q ss_pred ccCCcccCCCCCCCCCCCCCCeEEEEEEecCC-CCceEEEeccCCCeEeeeecccccccccccCccccccCCCCCcceEE
Q 040461 65 SRRSVAAHPWHDLEIGPGAPNVFNCVVEITKG-SKVKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVL 143 (318)
Q Consensus 65 ~~~~~~~spwHDIPl~~~~p~~vnvVVEIPkg-S~aKyEidk~~g~ik~DRvl~~~~~YP~NYGfIPqTl~gDGDPLDVl 143 (318)
+..|.++|+||+||++++.|+.|||||||||| |++|||+|+++|.|++||++++++.||+|||||||||++||||||||
T Consensus 15 ~~~g~~im~~~~ip~g~~~p~~vnvvIEIP~g~s~~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPLDvl 94 (197)
T 3fq3_A 15 QTQGPGSMNIDAISIGSNPPEDVNVIIEVPVGGQPIKYEMDKKAGALIVDRFLYTPMTYPGNYGFVPHTLSEDGDPIDVL 94 (197)
T ss_dssp -------CCGGGSCSCSSTTSCEEEEEEECTTCCSEEEEEETTTTEEEEEEECCSSBCCSSEEEECTTCCCTTSSCCEEE
T ss_pred ccCCCCcCCHHHCCCCCCCCCEEEEEEEecCCCCCEeEEEecCCCCEEEEeecCCCCcCCcccccccCcccCCCCceEEE
Confidence 34788899999999999999999999999985 99999999999999999999999999999999999999999999999
Q ss_pred EecCccCCCeeEEEEEEeeeEEeeeCCCCccEEEEEeCC--CcccCCCCCCCCCChhhHHHHHHHHHHcccCC-CceeEe
Q 040461 144 VLMQEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCAD--DPEYKHYTDIKELPPHRLTEIRRFFEDYKKNE-NKKVAV 220 (318)
Q Consensus 144 VLg~~p~~pG~Vv~vRvIGvL~MiDeGE~D~KIIaV~~~--DP~~~~i~dI~DLp~~~l~eI~~FF~~YK~le-GK~v~v 220 (318)
||+++|+.||++++|||||+|+|+|+||.|||||||+++ ||+|++|+|++|||++++++|+|||++||.+| ||++++
T Consensus 95 vl~~~p~~pG~vi~~r~iGvl~MiDege~D~KIIaVp~~~~dp~~~~i~di~Dlp~~~l~~I~~fF~~YK~le~~K~v~v 174 (197)
T 3fq3_A 95 VCNTRPLIPGCVINVRPIGVLVMEDNSGKDEKIIAVPSPHLTRRYEKIHDYTDMPEITLKQIAHFFEHYKDLEPGKWVKI 174 (197)
T ss_dssp ECCSSCCCTTCEEEEEEEEEEEEEETTEEEEEEEEEECTTTCSTTTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEE
T ss_pred EEcCCCCCCceEEEEEEEEEEEEecCCCCccEEEEEECCCCCchhcccCchHHCCHHHHHHHHHHHHHhcCcCCCCeEEe
Confidence 999999999999999999999999999999999999999 89999999999999999999999999999999 899999
Q ss_pred CeecCHHHHHHHHHHHHHHHhc
Q 040461 221 NEFLPTSTAVEAIQYSMCVRPK 242 (318)
Q Consensus 221 ~g~~d~e~A~kvI~ea~~~y~~ 242 (318)
.+|.|+++|+++|++|+++|++
T Consensus 175 ~~~~~~~~A~~~I~~~~~~~~~ 196 (197)
T 3fq3_A 175 GDWGDEDYARKFIVEAIERAKG 196 (197)
T ss_dssp CCCBCHHHHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999975
No 5
>3ld3_A Inorganic pyrophosphatase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.75A {Anaplasma phagocytophilum} PDB: 3lo0_A
Probab=100.00 E-value=3.4e-68 Score=479.04 Aligned_cols=178 Identities=38% Similarity=0.629 Sum_probs=164.2
Q ss_pred ccCCcccCCCCCCCCCCCCCCeEEEEEEecCCC-CceEEEeccCCCeEeeeecccccccccccCccccccCCCCCcceEE
Q 040461 65 SRRSVAAHPWHDLEIGPGAPNVFNCVVEITKGS-KVKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVL 143 (318)
Q Consensus 65 ~~~~~~~spwHDIPl~~~~p~~vnvVVEIPkgS-~aKyEidk~~g~ik~DRvl~~~~~YP~NYGfIPqTl~gDGDPLDVl 143 (318)
+.+|..+|+||+||++++.|+.||||||||||| ++|||+|+++|.|++||++++++.||+|||||||||++||||||||
T Consensus 15 ~~~g~~~m~~~~i~~g~~~p~~vnvvIEIP~gs~~~KyE~dk~~G~l~~DR~l~~~~~YP~NYGfIP~Tl~~DGDPLDvl 94 (199)
T 3ld3_A 15 QTQGPGSMNLDDIGSGSNAPEEVNVVIEVSQDSHPVKYEFDEKNGALWVDRFLPTAMYYPCNYGFIPNTIAGDGDPVDVL 94 (199)
T ss_dssp -----------CCCSCTTTTTSEEEEEEECTTCCSEEEEECTTTCCEEEEEECSSSBCCSSEEEECTTCCCTTSSCCEEE
T ss_pred ccCCCccCChHHCCCCCCCCCEEEEEEEecCCCCCEEEEEecCCCCEEEEEEcCCCCcCCcccccccccccCCCCceEEE
Confidence 357888999999999999999999999999998 5999999999999999999999999999999999999999999999
Q ss_pred EecCccCCCeeEEEEEEeeeEEeeeCCCCccEEEEEeCC--CcccCCCCCCCCCChhhHHHHHHHHHHcccCC-CceeEe
Q 040461 144 VLMQEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCAD--DPEYKHYTDIKELPPHRLTEIRRFFEDYKKNE-NKKVAV 220 (318)
Q Consensus 144 VLg~~p~~pG~Vv~vRvIGvL~MiDeGE~D~KIIaV~~~--DP~~~~i~dI~DLp~~~l~eI~~FF~~YK~le-GK~v~v 220 (318)
||++.|+.||++++|||||+|+|+|+||.|||||||+++ ||+|++|+|++|||++++++|+|||++||.+| ||++++
T Consensus 95 vl~~~p~~pG~vi~vr~IGvl~MiDege~D~KIIaVp~~~~dp~~~~i~di~Dlp~~~l~~I~~fF~~YK~le~gK~v~v 174 (199)
T 3ld3_A 95 VLARFPVMPGAVICVRPVGVLMMNDEKGEDAKVLAVPATKVDQYYGNIVNYSDLPSSFLDSISHFFSFYKKLEKDKFVSV 174 (199)
T ss_dssp ECCSSCCCTTCEEEEEEEEEEEEEETTEECCEEEEEECTTTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEE
T ss_pred EecCCCCCCceEEEEEEEEEEEEecCCCCcceEEEEECCCCCccccccCchHHCCHHHHHHHHHHHHHhcCcCCCceEEe
Confidence 999999999999999999999999999999999999999 99999999999999999999999999999998 799999
Q ss_pred CeecCHHHHHHHHHHHHHHHhc
Q 040461 221 NEFLPTSTAVEAIQYSMCVRPK 242 (318)
Q Consensus 221 ~g~~d~e~A~kvI~ea~~~y~~ 242 (318)
.+|.|+++|+++|++|+++|++
T Consensus 175 ~gw~~~~~A~~~I~~~~~~~~~ 196 (199)
T 3ld3_A 175 GCWQDAASAKELIRSAIIAAKK 196 (199)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999985
No 6
>2au7_A Inorganic pyrophosphatase; hydrolase, mutant; 1.05A {Escherichia coli} PDB: 1i40_A 1i6t_A 1igp_A 1obw_A 2au6_A 2au8_A 2au9_A 2auu_A 1mjy_A 1faj_A 1ino_A 1ipw_A 1jfd_A 2eip_A 1mjz_A 1mjx_A 1mjw_A 3i4q_A*
Probab=100.00 E-value=1.4e-67 Score=467.00 Aligned_cols=170 Identities=35% Similarity=0.589 Sum_probs=167.9
Q ss_pred CCCCCCCCCCCCCeEEEEEEecCCCC-ceEEEeccCCCeEeeeecccccccccccCccccccCCCCCcceEEEecCccCC
Q 040461 73 PWHDLEIGPGAPNVFNCVVEITKGSK-VKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLVLMQEPVL 151 (318)
Q Consensus 73 pwHDIPl~~~~p~~vnvVVEIPkgS~-aKyEidk~~g~ik~DRvl~~~~~YP~NYGfIPqTl~gDGDPLDVlVLg~~p~~ 151 (318)
+||+||++++.|+.|||||||||||+ +|||+|+++|.|++||++++++.||+|||||||||++||||||||||+++|+.
T Consensus 1 ~~~~ip~~~~~p~~~nvvIEIP~gs~p~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~~p~~ 80 (175)
T 2au7_A 1 SLLNVPAGKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDQFMSTAMFYPCNYGYINHTLSLDGDPVDVLVPTPYPLQ 80 (175)
T ss_dssp CGGGCCSCSBTTTBEEEEEEECTTCCSEEEEECTTTCCEEEEEECSSSCCCSSEEEECTTCCCTTSSCCEEEECCSSCCC
T ss_pred CcccCCCCCCCCCEEEEEEEecCCCCceeEEEecCCCCEEEeeecCCCCcCCcCcCccCCccCCCCCceEEEEECCCCCC
Confidence 69999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEeeeEEeeeCCCCccEEEEEeCC--CcccCCCCCCCCCChhhHHHHHHHHHHcccCC-CceeEeCeecCHHH
Q 040461 152 PGCFLRARAIGLMPMIDQGEKDDKIIAVCAD--DPEYKHYTDIKELPPHRLTEIRRFFEDYKKNE-NKKVAVNEFLPTST 228 (318)
Q Consensus 152 pG~Vv~vRvIGvL~MiDeGE~D~KIIaV~~~--DP~~~~i~dI~DLp~~~l~eI~~FF~~YK~le-GK~v~v~g~~d~e~ 228 (318)
||++++||+||+|+|+|+||.|||||||+++ ||+|++++|++|||++++++|+|||++||.+| ||++++.+|.|+++
T Consensus 81 pG~vi~~r~iGvl~m~Deg~~D~KiiaV~~~k~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le~gK~v~v~gw~~~~~ 160 (175)
T 2au7_A 81 PGSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEA 160 (175)
T ss_dssp TTCEEEEEEEEEEEEEETTEECCEEEEEECTTTCSTTTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEECHHH
T ss_pred CceEEEEEEEEEEEeecCCCCccEEEEEeCCCCCcchhhCCChHHCCHHHHHHHHHHHHHhhCccCCCCeEEccccCHHH
Confidence 9999999999999999999999999999999 99999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 040461 229 AVEAIQYSMCVRPK 242 (318)
Q Consensus 229 A~kvI~ea~~~y~~ 242 (318)
|+++|++|+++|++
T Consensus 161 A~~~I~~~~~~~~~ 174 (175)
T 2au7_A 161 AKAEIVASFERAKN 174 (175)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999986
No 7
>2bqx_A Inorganic pyrophosphatase; hydrolase; 1.90A {Helicobacter pylori} PDB: 1ygz_A 2bqy_A
Probab=100.00 E-value=2.5e-67 Score=464.34 Aligned_cols=170 Identities=39% Similarity=0.656 Sum_probs=161.6
Q ss_pred CCCCCCCCCCCCCCeEEEEEEecCCCCceEEEeccCCCeEeeeecccccccccccCccccccCCCCCcceEEEecCccCC
Q 040461 72 HPWHDLEIGPGAPNVFNCVVEITKGSKVKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLVLMQEPVL 151 (318)
Q Consensus 72 spwHDIPl~~~~p~~vnvVVEIPkgS~aKyEidk~~g~ik~DRvl~~~~~YP~NYGfIPqTl~gDGDPLDVlVLg~~p~~ 151 (318)
++||+||++++ |+.|||||||||||++|||+|+++|.+++||++++++.||+|||||||||++||||||||||+++|+.
T Consensus 1 m~~~~ip~~~~-p~~~nvvIEIP~gs~~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~~p~~ 79 (173)
T 2bqx_A 1 MNLEKLEVSHD-ADSLCVVIEISKHSNIKYELDKESGALMVDRVLYGAQNYPANYGFVPNTLGSDGDPVDALVLSDVAFQ 79 (173)
T ss_dssp ------CCCEE-TTEEEEEEEECTTCSEEEEECTTTCCEEEEEECSSSCCCSSEEEECSSCCCTTSSCCEEEECCSSCCC
T ss_pred CCcccCCCCCC-CCeEEEEEEECCCCCeEEEEecCCCCEEEeeecCCCCcCcccccccccccCCCCCceEEEEECCCCCC
Confidence 38999999998 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEeeeEEeeeCCCCccEEEEEeCC--CcccCCCCCCCCCChhhHHHHHHHHHHcccCC-CceeEeCeecCHHH
Q 040461 152 PGCFLRARAIGLMPMIDQGEKDDKIIAVCAD--DPEYKHYTDIKELPPHRLTEIRRFFEDYKKNE-NKKVAVNEFLPTST 228 (318)
Q Consensus 152 pG~Vv~vRvIGvL~MiDeGE~D~KIIaV~~~--DP~~~~i~dI~DLp~~~l~eI~~FF~~YK~le-GK~v~v~g~~d~e~ 228 (318)
||++++|||||+|+|+|+||.|||||||+++ ||+|++++|++|||++++++|+|||++||.+| ||++++.+|.|+++
T Consensus 80 ~G~vi~~r~iGvl~m~D~g~~D~KiiaV~~~k~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le~gK~v~~~g~~~~~~ 159 (173)
T 2bqx_A 80 AGSVVKARLVGVLNMEDESGMDEKLIALPIDKIDPTHSYVKDIDDLSKHTLDKIKHFFETYKDLEPNKWVKVKGFENKES 159 (173)
T ss_dssp TTCEEEEEEEEEEEEEETTEEEEEEEEEECTTTCCTTTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEEEHHH
T ss_pred CceEEEEEEEEEEEeccCCCCccEEEEEeCCCCCcchhhcCChhHCCHHHHHHHHHHHHHhccccCCCceeeCcCcCHHH
Confidence 9999999999999999999999999999999 99999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 040461 229 AVEAIQYSMCVRPK 242 (318)
Q Consensus 229 A~kvI~ea~~~y~~ 242 (318)
|+++|++|+++|++
T Consensus 160 A~~~I~~~~~~~~~ 173 (173)
T 2bqx_A 160 AIKVLEKAIKAYQG 173 (173)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999974
No 8
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=100.00 E-value=8.6e-67 Score=461.18 Aligned_cols=167 Identities=37% Similarity=0.598 Sum_probs=164.1
Q ss_pred CCCCCCCCCCCCCCeEEEEEEecCCCC-ceEEEeccCCCeEeeeecccccccccccCccccccCCCCCcceEEEecCccC
Q 040461 72 HPWHDLEIGPGAPNVFNCVVEITKGSK-VKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLVLMQEPV 150 (318)
Q Consensus 72 spwHDIPl~~~~p~~vnvVVEIPkgS~-aKyEidk~~g~ik~DRvl~~~~~YP~NYGfIPqTl~gDGDPLDVlVLg~~p~ 150 (318)
++||+||++++ |+.|||||||||||+ +|||+|+++|.|++||++++++.||+|||||||||++||||||||||+++|+
T Consensus 2 m~~~~ip~~~~-p~~~nvvIEIP~gs~p~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~~p~ 80 (173)
T 3d53_A 2 MFIKKIKAKAN-NNEINVIIEIPMNSGPIKYEFDKESGALFVDRFMQTTMSYPCNYGFIPDTLSNDGDPVDVLVVAHHPV 80 (173)
T ss_dssp -CGGGSCSCSS-TTCEEEEEEECTTCCSEEEEECTTTCCEEEEEECCSSCCCSSEEEECTTCCCTTSSCCEEEECCSSCC
T ss_pred CchhhCCCCCC-CCeEEEEEEeCCCCCceeEEEecCCCCEEEeeecCCCCcCCcccchhhCCccCCCCceEEEEECCCcc
Confidence 48999999999 999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEEEeeeEEeeeCCCCccEEEEEeCC--CcccCCCCCCCCCChhhHHHHHHHHHHcccCC-CceeEeCeecCHH
Q 040461 151 LPGCFLRARAIGLMPMIDQGEKDDKIIAVCAD--DPEYKHYTDIKELPPHRLTEIRRFFEDYKKNE-NKKVAVNEFLPTS 227 (318)
Q Consensus 151 ~pG~Vv~vRvIGvL~MiDeGE~D~KIIaV~~~--DP~~~~i~dI~DLp~~~l~eI~~FF~~YK~le-GK~v~v~g~~d~e 227 (318)
.||++++||+||+|+|+|+||.|||||||+++ ||+|++++|++|||++++++|+|||++||.+| ||++++.+|.|++
T Consensus 81 ~~G~vi~~r~iGvl~m~Dege~D~KiiaV~~~k~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le~gK~v~v~gw~~~~ 160 (173)
T 3d53_A 81 VPGSVIKCRAIGVLMMEDESGLDEKIIAVPTSKLDITFDHIKELDDLCEMLKKRIVHFFEHYKDLEKGKWVKVTGWGDKV 160 (173)
T ss_dssp CTTCEEEEEEEEEEEEEETTEEEEEEEEEECTTTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEECHH
T ss_pred CCceEEEEEEEEEEEEccCCCccceEEEEeCCCCCcchhhcCChhHCCHHHHHHHHHHHHHHcCccCCCcEEEccCcCHH
Confidence 99999999999999999999999999999999 99999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHH
Q 040461 228 TAVEAIQYSMCV 239 (318)
Q Consensus 228 ~A~kvI~ea~~~ 239 (318)
+|+++|++|+++
T Consensus 161 ~A~~~I~~~~~~ 172 (173)
T 3d53_A 161 KAETLIKEGIDR 172 (173)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 999999999975
No 9
>3tr4_A Inorganic pyrophosphatase; central intermediary metabolism, hydrolase; HET: MSE; 2.00A {Coxiella burnetii} SCOP: b.40.5.0
Probab=100.00 E-value=1.9e-66 Score=460.76 Aligned_cols=167 Identities=39% Similarity=0.642 Sum_probs=162.3
Q ss_pred CCCCCCCCCCCeEEEEEEecCCCC-ceEEEeccCCCeEeeeecccccccccccCccccccCCCCCcceEEEecCccCCCe
Q 040461 75 HDLEIGPGAPNVFNCVVEITKGSK-VKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLVLMQEPVLPG 153 (318)
Q Consensus 75 HDIPl~~~~p~~vnvVVEIPkgS~-aKyEidk~~g~ik~DRvl~~~~~YP~NYGfIPqTl~gDGDPLDVlVLg~~p~~pG 153 (318)
|+||++++. +.|||||||||||+ +|||+|+++|.|++||++++++.||+|||||||||+|||||||||||++.|+.||
T Consensus 6 h~ip~g~~~-~~vnvvIEIP~gs~~~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~~p~~pG 84 (178)
T 3tr4_A 6 FLVSAGKGI-DDFNVIIEIPANGGEVKYEYDKELGFLTVDRFMPTSMRYPCNYGFVPSTLAQDGDPLDVLVLTPVPVQPG 84 (178)
T ss_dssp --CCCEEET-TEEEEEEEECTTCCSEEEEEETTTTEEEEEEECCSSBCCSSEEEECTTCCCTTSSCCEEEECCSSCCCTT
T ss_pred ccCCCCCCC-CEEEEEEEecCCCCcEEEEEecCCCcEEEEEecCcCccCCccccccCCcccCCCCceEEEEECCCCCCCe
Confidence 999999887 99999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeeeEEeeeCCCCccEEEEEeCC--CcccCCCCCCCCCChhhHHHHHHHHHHcccCC-CceeEeCeecCHHHHH
Q 040461 154 CFLRARAIGLMPMIDQGEKDDKIIAVCAD--DPEYKHYTDIKELPPHRLTEIRRFFEDYKKNE-NKKVAVNEFLPTSTAV 230 (318)
Q Consensus 154 ~Vv~vRvIGvL~MiDeGE~D~KIIaV~~~--DP~~~~i~dI~DLp~~~l~eI~~FF~~YK~le-GK~v~v~g~~d~e~A~ 230 (318)
++++|||||+|+|+|+||+|||||||+++ ||+|++++|++|||++++++|+|||++||.+| ||++++.+|.|+++|+
T Consensus 85 ~vi~~r~iGvl~m~Dege~D~KiIaVp~~~~dp~~~~i~di~dl~~~~l~~i~~fF~~YK~le~gK~v~~~g~~~~~~A~ 164 (178)
T 3tr4_A 85 VLMRVRALGIMKMEDEAGEDSKVLAVPVVKACRAYEAIQSLKDISSLLLDAISHFFERYKDLEPNKWAKVKGWEDKEAAK 164 (178)
T ss_dssp CEEEEEEEEEEEEEETTEECCEEEEEECTTTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEECHHHHH
T ss_pred eEEEEEEEEEEEeccCCCCcceEEEEEcCCCCchhhhcCchhhCCHHHHHHHHHHHHHHcCcCCCceeEeccCcCHHHHH
Confidence 99999999999999999999999999999 89999999999999999999999999999999 6999999999999999
Q ss_pred HHHHHHHHHHhc
Q 040461 231 EAIQYSMCVRPK 242 (318)
Q Consensus 231 kvI~ea~~~y~~ 242 (318)
++|++|+++|++
T Consensus 165 ~~I~~~~~~~~~ 176 (178)
T 3tr4_A 165 KEFEASIVRFKE 176 (178)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999999987
No 10
>1e9g_A Ppase, inorganic pyrophosphatase; pyrophosphate phosphohydrolase, hydrolase, manganese; HET: PO4; 1.15A {Saccharomyces cerevisiae} SCOP: b.40.5.1 PDB: 1e6a_A* 1wgi_A 1wgj_A 2ihp_A* 8prk_A 2ik6_A 2ik2_A 2ik4_A 117e_A 2ik1_A* 2ik9_A 2ik0_A 2ik7_A 1m38_A 1ypp_A 1huk_A 1huj_A 1pyp_A
Probab=100.00 E-value=3.7e-67 Score=493.48 Aligned_cols=196 Identities=28% Similarity=0.431 Sum_probs=184.8
Q ss_pred cccCCCCCccceeeeecccCCcccCCCCCCCCCCCCC-CeEEEEEEecCCCCceEEEeccC-----------CCeEeeee
Q 040461 48 NVSRSAPKLNERILSSLSRRSVAAHPWHDLEIGPGAP-NVFNCVVEITKGSKVKYELDKKT-----------GLIKVDRV 115 (318)
Q Consensus 48 ~~~~~~~~~~~Rv~~s~~~~~~~~spwHDIPl~~~~p-~~vnvVVEIPkgS~aKyEidk~~-----------g~ik~DRv 115 (318)
.++|..++++||++ +...++.+|||||||++++.+ +.|||||||||||++|||+|+++ |.+++||.
T Consensus 5 ~~~G~~~t~~~r~~--~~~~g~~~sp~hdIp~~~~~~~~~~nvVIEIP~gs~~KyEidk~~~~nPIkqd~k~G~lr~dr~ 82 (286)
T 1e9g_A 5 RQIGAKNTLEYKVY--IEKDGKPVSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRN 82 (286)
T ss_dssp EEEEETTSTTCEEE--EEETTEEECTTTTSCSEEETTTTEEEEEEEECTTCCBCEEECTTSTTCCEEECEETTEECBCCE
T ss_pred eeecCCCCcceEEE--EEeCCeecCchhhCCCCCCCCCCEEEEEEEECCCCCeEEEEccCCCCCcchhhhcCCcEEEEec
Confidence 45788999999998 455799999999999998864 89999999999999999999997 77889999
Q ss_pred cccccccccccCcccccc------------CCCCCcceEEEecCccCCCeeEEEEEEeeeEEeeeCCCCccEEEEEeCCC
Q 040461 116 LYSSVVYPHNYGFIPRTL------------CEDNDPLDVLVLMQEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCADD 183 (318)
Q Consensus 116 l~~~~~YP~NYGfIPqTl------------~gDGDPLDVlVLg~~p~~pG~Vv~vRvIGvL~MiDeGE~D~KIIaV~~~D 183 (318)
+++++.||+||||||||| +|||||||||||++.|+.||++++|||||+|+|+|+||+|||||||+++|
T Consensus 83 l~~~~~YP~NYGfIPqTledp~~~~~~t~~~gDgDPLDVlvi~~~p~~pG~vi~vr~IGvl~MiDege~D~KIIaV~~~D 162 (286)
T 1e9g_A 83 CFPHHGYIHNYGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIND 162 (286)
T ss_dssp ETTCCSCSSEEEECSSCCCCTTSEETTTTEEBCSSCCEEEECCSSCCCTTCEEEEEEEEEECEEETTEECCEEEEEETTS
T ss_pred cCCCCCCccCcccCcccccCcccccccCCCCCCCCceEEEEecCccCCCccEEEEEEeEEEEeccCCCCCceEEEEeCCC
Confidence 999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCh---hhHHHHHHHHHHcccCCCcee---E-eCeecCHHHHHHHHHHHHHHHhcccc
Q 040461 184 PEYKHYTDIKELPP---HRLTEIRRFFEDYKKNENKKV---A-VNEFLPTSTAVEAIQYSMCVRPKLSF 245 (318)
Q Consensus 184 P~~~~i~dI~DLp~---~~l~eI~~FF~~YK~leGK~v---~-v~g~~d~e~A~kvI~ea~~~y~~~~~ 245 (318)
|+|++++|++||++ +++++|+|||++||.+|||++ . +++|.|+++|+++|++|+++|+++..
T Consensus 163 p~~~~i~di~Dl~~~~p~~l~~i~~fF~~YK~leGK~~n~~~~~~~~~~~~~A~~vI~~~~~~~~~l~~ 231 (286)
T 1e9g_A 163 PLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIA 231 (286)
T ss_dssp TTGGGCCSHHHHHHHSTTHHHHHHHHHHHTTGGGTCCCCEEGGGGCCBCHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccCCCHHHhchhhHHHHHHHHHHHHHhcCcCCCCcceeEecCcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999987 899999999999999999984 3 37999999999999999999999874
No 11
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase); thermostability, magnesium, hydrolase; 2.70A {Sulfolobus acidocaldarius} SCOP: b.40.5.1
Probab=100.00 E-value=1.4e-65 Score=453.29 Aligned_cols=167 Identities=45% Similarity=0.743 Sum_probs=162.5
Q ss_pred CCCCCCCCCCeEEEEEEecCCCCceEEEeccCCCeEeeeecccccccccccCccccccCCCCCcceEEEecCccCCCeeE
Q 040461 76 DLEIGPGAPNVFNCVVEITKGSKVKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLVLMQEPVLPGCF 155 (318)
Q Consensus 76 DIPl~~~~p~~vnvVVEIPkgS~aKyEidk~~g~ik~DRvl~~~~~YP~NYGfIPqTl~gDGDPLDVlVLg~~p~~pG~V 155 (318)
+||.+++.|+.|||||||||||++|||+|+++|.|++||++++++.||+|||||||||++||||||||||+++|+.||++
T Consensus 2 ~i~~g~~~p~~~nvvIEIP~gs~~KyE~dk~~g~l~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~~p~~~G~v 81 (173)
T 1qez_A 2 KLSPGKNAPDVVNVLVEIPQGSNIKYEYDDEEGVIKVDRVLYTSMNYPFNYGFIPGTLEEDGDPLDVLVITNYQLYPGSV 81 (173)
T ss_dssp CCCSCTTTTTSEEEEEEECTTCCEEEEEETTTTEEEEEEECSSSBCCSSEEEECTTCCCTTSSCCEEEECCSSCCCTTCE
T ss_pred CcCCCCCCCCeEEEEEEECCCCCeEEEEecCCCCEEEEeecCCCCcCCccccccccccCCCCCceEEEEECCCCCCCccE
Confidence 56777777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeeEEeeeCCCCccEEEEEeCC--CcccCCCCCCCCCChhhHHHHHHHHHHcccCC-CceeEeCeecCHHHHHHH
Q 040461 156 LRARAIGLMPMIDQGEKDDKIIAVCAD--DPEYKHYTDIKELPPHRLTEIRRFFEDYKKNE-NKKVAVNEFLPTSTAVEA 232 (318)
Q Consensus 156 v~vRvIGvL~MiDeGE~D~KIIaV~~~--DP~~~~i~dI~DLp~~~l~eI~~FF~~YK~le-GK~v~v~g~~d~e~A~kv 232 (318)
++|||||+|+|+|+||.|||||||+++ ||+|++++|++|||++++++|+|||++||.+| ||++++.+|.|+++|+++
T Consensus 82 i~~r~iGvl~m~Dege~D~KiiaV~~~k~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le~gK~v~~~gw~~~~~A~~~ 161 (173)
T 1qez_A 82 IEVRPIGILYMKDEEGEDAKIVAVPKDKTDPSFSNIKDINDLPQATKNKIVHFFEHYKELEPGKYVKISGWGSATEAKNR 161 (173)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEECTTTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEECHHHHHHH
T ss_pred EEEEEEEEEEeecCCCcccEEEEEeCCCCCcchhhcCChHHCCHHHHHHHHHHHHHhccccCCCceEEccccCHHHHHHH
Confidence 999999999999999999999999999 99999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHhc
Q 040461 233 IQYSMCVRPK 242 (318)
Q Consensus 233 I~ea~~~y~~ 242 (318)
|++|+++|++
T Consensus 162 I~~~~~~~~~ 171 (173)
T 1qez_A 162 IQLAIKRVSG 171 (173)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHh
Confidence 9999999987
No 12
>1sxv_A Inorganic pyrophosphatase; structural genomics, ppase,, hydrolase; 1.30A {Mycobacterium tuberculosis} PDB: 1wcf_A 2uxs_A 4ecp_A
Probab=100.00 E-value=3.3e-64 Score=444.50 Aligned_cols=159 Identities=40% Similarity=0.727 Sum_probs=155.0
Q ss_pred CeEEEEEEecCCCCceEEEeccCCCeEeeeecccccccccccCccccccCCCCCcceEEEecCccCCCeeEEEEEEeeeE
Q 040461 85 NVFNCVVEITKGSKVKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLVLMQEPVLPGCFLRARAIGLM 164 (318)
Q Consensus 85 ~~vnvVVEIPkgS~aKyEidk~~g~ik~DRvl~~~~~YP~NYGfIPqTl~gDGDPLDVlVLg~~p~~pG~Vv~vRvIGvL 164 (318)
-.|||||||||||++|||+|+++|.+++||++++++.||+|||||||||++||||||||||+++|+.||++++|||||+|
T Consensus 11 ~~~nvvIEIP~gs~~KyE~Dk~~G~l~~DR~l~~~~~YP~NYGfIP~Tl~~DGDPlDvlvl~~~p~~pG~vi~~r~iGvl 90 (172)
T 1sxv_A 11 MQFDVTIEIPKGQRNKYEVDHETGRVRLDRYLYTPMAYPTDYGFIEDTLGDDGDPLDALVLLPQPVFPGVLVAARPVGMF 90 (172)
T ss_dssp CCEEEEEEECTTCCEEC-CCTTTCCCCCCEECSSSCCCSSEEEEETTCCCTTSSCCEEEECCSSCCCTTCEEEEEEEEEE
T ss_pred eEEEEEEEECCCCCeEEEEEcCCCCEEEEeecCCCCCCCcCcCccCCccCCCCCCeEEEEEcCCCcCCceEEEEEEEEEE
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeCCCCccEEEEEeCCCcccCCCCCCCCCChhhHHHHHHHHHHcccCC-CceeEeCeecCHHHHHHHHHHHHHHHhcc
Q 040461 165 PMIDQGEKDDKIIAVCADDPEYKHYTDIKELPPHRLTEIRRFFEDYKKNE-NKKVAVNEFLPTSTAVEAIQYSMCVRPKL 243 (318)
Q Consensus 165 ~MiDeGE~D~KIIaV~~~DP~~~~i~dI~DLp~~~l~eI~~FF~~YK~le-GK~v~v~g~~d~e~A~kvI~ea~~~y~~~ 243 (318)
+|+|+||.|||||||+++||+|++++|++|||++++++|+|||++||.+| ||++++.+|.|+++|+++|++|+++|++.
T Consensus 91 ~m~Dege~D~KIIaVp~~Dp~~~~i~di~Dlp~~~l~~I~~fF~~YK~le~gK~v~v~gw~~~~~A~~~I~~~~~~~~~~ 170 (172)
T 1sxv_A 91 RMVDEHGGDDKVLCVPAGDPRWDHVQDIGDVPAFELDAIKHFFVHYKDLEPGKFVKAADWVDRAEAEAEVQRSVERFKAG 170 (172)
T ss_dssp EEEETTEECCEEEEEETTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEECHHHHHHHHHHHHHHHHC-
T ss_pred EecCCCCCCCEEEEEeCCCCCccccCChHHCCHHHHHHHHHHHHHhcCcCCCCeEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999 99999999999999999999999999874
No 13
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=35.31 E-value=46 Score=26.69 Aligned_cols=64 Identities=23% Similarity=0.308 Sum_probs=41.4
Q ss_pred CCCCCeEEEEEEecCCCCceEEEeccCCCeE------------ee--eecccccccccccCccccccC-CCCCcceEEEe
Q 040461 81 PGAPNVFNCVVEITKGSKVKYELDKKTGLIK------------VD--RVLYSSVVYPHNYGFIPRTLC-EDNDPLDVLVL 145 (318)
Q Consensus 81 ~~~p~~vnvVVEIPkgS~aKyEidk~~g~ik------------~D--Rvl~~~~~YP~NYGfIPqTl~-gDGDPLDVlVL 145 (318)
+.....+|+-|- -+|+...|.+-+.+.+=+ .+ |+++- .-..|=--=|++|+ +|||=+|++++
T Consensus 16 ~~~~~~IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfD--G~rI~~~~TP~~L~meD~DiID~~~~ 92 (95)
T 2l76_A 16 PETPRLFPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFG--ETELSPTATPRTLKLGVADIIDCVVL 92 (95)
T ss_dssp CSCCCCEEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEET--TEECCTTSCHHHHTCCSSCEEEEEEC
T ss_pred CCCCCeEEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEEC--CcCCCCCCCHhHcCCCCCCEEEEEEe
Confidence 344566888888 588889999988776411 11 22222 12233344566675 89999999998
Q ss_pred cC
Q 040461 146 MQ 147 (318)
Q Consensus 146 g~ 147 (318)
.+
T Consensus 93 ~~ 94 (95)
T 2l76_A 93 TS 94 (95)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 14
>2xet_A CAF1A usher, F1 capsule-anchoring protein; transport protein; 1.60A {Yersinia pestis}
Probab=34.66 E-value=38 Score=25.56 Aligned_cols=34 Identities=12% Similarity=0.358 Sum_probs=25.1
Q ss_pred eeEEEEeeCCccceeeeccc---CCeeeeeecccccc
Q 040461 251 WAILFVYDNFQPTELFFNWQ---GPLCRVHYAFPEAI 284 (318)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 284 (318)
.-.+|+-..=....|...|. +..|+++|..|+.-
T Consensus 37 ~G~vyl~g~~~~~~L~V~wg~~~~~~C~~~y~l~~~~ 73 (89)
T 2xet_A 37 NSGVYLTGLPKKSKILVKWGRDKNQSCSSNVVLPEKT 73 (89)
T ss_dssp TSEEEEEEECSEEEEEEESCSSTTSEEEEEEECCSCC
T ss_pred CCEEEEECCCCCCEEEEEECCCCCCcEEEEEeCCCCc
Confidence 33456655555678999994 56899999999874
No 15
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=32.29 E-value=1.4e+02 Score=22.68 Aligned_cols=65 Identities=12% Similarity=0.082 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHcccCC---------C--ceeEeCeecCHHHHHHHHHHHHHHHhcccccccCCeeEEEEeeCCccceeee
Q 040461 199 RLTEIRRFFEDYKKNE---------N--KKVAVNEFLPTSTAVEAIQYSMCVRPKLSFNFEADWAILFVYDNFQPTELFF 267 (318)
Q Consensus 199 ~l~eI~~FF~~YK~le---------G--K~v~v~g~~d~e~A~kvI~ea~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (318)
.-++|+++|..|-... | |...+..|.+.++|.++|+.... .
T Consensus 48 t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g----------------------------~ 99 (124)
T 2kt5_A 48 SDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKG----------------------------V 99 (124)
T ss_dssp CHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTT----------------------------E
T ss_pred CHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCC----------------------------C
Confidence 3467899999885332 1 23556788999999887764311 0
Q ss_pred cccCCeeeeeeccccccCCCCCCc
Q 040461 268 NWQGPLCRVHYAFPEAIGEPYIPP 291 (318)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~ 291 (318)
.+.|-..+|.+|-+...-.|..|+
T Consensus 100 ~~~g~~l~V~~a~~~~~~~~~~~~ 123 (124)
T 2kt5_A 100 PLDGRPMDIQLVASQIDLEHHHHH 123 (124)
T ss_dssp ESSSCEEEEEEECCTTCCCCCCCC
T ss_pred EECCcEEEEEEeCCCCCCCCCcCC
Confidence 124556677777777666665554
No 16
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=31.81 E-value=64 Score=27.72 Aligned_cols=69 Identities=13% Similarity=0.086 Sum_probs=47.8
Q ss_pred ecCHHHHHHHHHHHHHHHhcccccccCCeeEEEEeeCCccceeeecccCCeeee----e-ecccccc----CCCCCCcEE
Q 040461 223 FLPTSTAVEAIQYSMCVRPKLSFNFEADWAILFVYDNFQPTELFFNWQGPLCRV----H-YAFPEAI----GEPYIPPIV 293 (318)
Q Consensus 223 ~~d~e~A~kvI~ea~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~----~~~~~~~~~ 293 (318)
..+.+.+.+-+.+....|..+.-+++ .|.+++=. +++..+|+|++.-. . |.||=.| .-|+-||+|
T Consensus 27 Y~~~~~~~~dv~~~l~~yp~L~p~t~-----~yt~~dG~-~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v 100 (162)
T 3r3q_A 27 YNDGRTTFHDSLALLDNFHSLRPRTR-----VFTHSDGT-PQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFI 100 (162)
T ss_dssp CTTHHHHHHHHHHHHHHCTTEEEEEE-----EEECTTSC-EEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEE
T ss_pred ccChhHHHHHHHHHHHhCCCCceeee-----eEEcCCCC-hheEEEEECccCccccCcccccccEEEEeCcccCCCCCEE
Confidence 67888888888888888888876654 26665443 56778999988621 1 3344433 358899999
Q ss_pred EEec
Q 040461 294 FQLG 297 (318)
Q Consensus 294 ~~~~ 297 (318)
|-.-
T Consensus 101 ~v~p 104 (162)
T 3r3q_A 101 SINL 104 (162)
T ss_dssp EECG
T ss_pred EEEC
Confidence 8753
No 17
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=29.89 E-value=1.8e+02 Score=26.00 Aligned_cols=52 Identities=25% Similarity=0.297 Sum_probs=38.5
Q ss_pred CCCCCChhhHHHHHHHHHHcccCCCceeEeCeecCHHHHHHHHHHHHHHHhc
Q 040461 191 DIKELPPHRLTEIRRFFEDYKKNENKKVAVNEFLPTSTAVEAIQYSMCVRPK 242 (318)
Q Consensus 191 dI~DLp~~~l~eI~~FF~~YK~leGK~v~v~g~~d~e~A~kvI~ea~~~y~~ 242 (318)
+.++|..-..+++++|++.+-.+.+-.+.+.|=.+.+++.+.+++....+..
T Consensus 172 ~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~l~~ 223 (434)
T 3gwb_A 172 DAKSIPPITLAQLKAFHAKAYAAGNVVIALVGDLSRSDAEAIAAQVSAALPK 223 (434)
T ss_dssp CTTTTTTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHHHHHHHSCC
T ss_pred CHHHHHhCCHHHHHHHHHHhcCcCCeEEEEEcCCCHHHHHHHHHHHHhcCCC
Confidence 4555666668999999988776766566666656889999999887776643
No 18
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=27.04 E-value=84 Score=26.54 Aligned_cols=73 Identities=21% Similarity=0.328 Sum_probs=50.5
Q ss_pred ecCHHHHHHHHHHHHHHHhcccccccCCeeEEEEeeCCccceeeecccCCeee----eeecccccc----CCCCCCcEEE
Q 040461 223 FLPTSTAVEAIQYSMCVRPKLSFNFEADWAILFVYDNFQPTELFFNWQGPLCR----VHYAFPEAI----GEPYIPPIVF 294 (318)
Q Consensus 223 ~~d~e~A~kvI~ea~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----~~~~~~~~~~ 294 (318)
...++.+.+-+..+...|..+.-.++ +|. --+++.++|+|-+.- ..|.+|=.| .-|+-||+||
T Consensus 19 Y~~~d~t~~dv~~vl~~yp~L~p~~~-------~y~--G~~~~LL~l~GtIpv~y~g~~y~iPi~Iwlp~~YP~~pP~vf 89 (146)
T 3obq_A 19 YKYRDLTVRETVNVITLYKDLKPVLD-------SYG--TGSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICF 89 (146)
T ss_dssp CSSHHHHHHHHHHHHHHCTTEEEEEE-------ESS--STTCEEEEEEEEEEEECSSCEEEEEEEEECCTTTTTSCCEEE
T ss_pred CCCcchhHHHHHHHHHhCCCCceEee-------eee--CChheEEEEEEEeeeeecCccccceEEEEeCccCCCCCCEEE
Confidence 56677888888889999988875543 222 445678888887752 123343332 3588999999
Q ss_pred EecCCceeee
Q 040461 295 QLGGGGMEIH 304 (318)
Q Consensus 295 ~~~~~~~~~~ 304 (318)
-.---+|.|.
T Consensus 90 v~pt~~m~I~ 99 (146)
T 3obq_A 90 VKPTSSMTIK 99 (146)
T ss_dssp ECCCTTEEEC
T ss_pred EeCCCCCEEC
Confidence 9888889773
No 19
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=22.58 E-value=69 Score=23.23 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHcccC------CCceeEeCeecCHHHHHHHHHHH
Q 040461 199 RLTEIRRFFEDYKKN------ENKKVAVNEFLPTSTAVEAIQYS 236 (318)
Q Consensus 199 ~l~eI~~FF~~YK~l------eGK~v~v~g~~d~e~A~kvI~ea 236 (318)
.-++|+++|..|-.. .+|......|.+.++|.++|+..
T Consensus 30 t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l 73 (97)
T 1why_A 30 SLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKM 73 (97)
T ss_dssp CHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHH
Confidence 347889999998643 24556677899999998877643
No 20
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=22.10 E-value=98 Score=21.60 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHcccCC----------C--ceeEeCeecCHHHHHHHHHHH
Q 040461 199 RLTEIRRFFEDYKKNE----------N--KKVAVNEFLPTSTAVEAIQYS 236 (318)
Q Consensus 199 ~l~eI~~FF~~YK~le----------G--K~v~v~g~~d~e~A~kvI~ea 236 (318)
.-++|+++|..|-... | +......|.+.++|.++++..
T Consensus 19 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 68 (87)
T 3bs9_A 19 TTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 68 (87)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHc
Confidence 3467899999884221 2 234566889999998887744
No 21
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=22.03 E-value=1.1e+02 Score=23.27 Aligned_cols=36 Identities=19% Similarity=0.179 Sum_probs=25.8
Q ss_pred HHHHHHHHHHcccC------------CCceeEeCeecCHHHHHHHHHH
Q 040461 200 LTEIRRFFEDYKKN------------ENKKVAVNEFLPTSTAVEAIQY 235 (318)
Q Consensus 200 l~eI~~FF~~YK~l------------eGK~v~v~g~~d~e~A~kvI~e 235 (318)
-++|+++|..|-.. ..|...+..|.+.++|.++|+.
T Consensus 77 ~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 124 (140)
T 2ku7_A 77 DKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 124 (140)
T ss_dssp HHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 47889999998432 1234567789999999887763
No 22
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.44 E-value=1.2e+02 Score=21.60 Aligned_cols=38 Identities=32% Similarity=0.288 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHcccCCC----ceeEeCeecCHHHHHHHHHHH
Q 040461 199 RLTEIRRFFEDYKKNEN----KKVAVNEFLPTSTAVEAIQYS 236 (318)
Q Consensus 199 ~l~eI~~FF~~YK~leG----K~v~v~g~~d~e~A~kvI~ea 236 (318)
.-++|+++|..|-.... +......|.+.++|.++|+..
T Consensus 23 t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l 64 (92)
T 2dgt_A 23 TNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 64 (92)
T ss_dssp CHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHh
Confidence 44788999999865542 335566889999998887644
No 23
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=21.38 E-value=73 Score=23.73 Aligned_cols=37 Identities=16% Similarity=0.272 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHcccCC----CceeEeCeecCHHHHHHHHHH
Q 040461 199 RLTEIRRFFEDYKKNE----NKKVAVNEFLPTSTAVEAIQY 235 (318)
Q Consensus 199 ~l~eI~~FF~~YK~le----GK~v~v~g~~d~e~A~kvI~e 235 (318)
.-++|+++|..|-... .|...+..|.+.++|.++|++
T Consensus 41 t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~ 81 (110)
T 1wf1_A 41 KKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLG 81 (110)
T ss_dssp CHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHH
Confidence 4678999999997554 244556678899999887764
No 24
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=20.79 E-value=86 Score=26.89 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=33.2
Q ss_pred eEEEecCccCCCeeEEEEEEeeeEEeeeCCCCccE---EEEEeCCCcccCCCCCCCCCCh
Q 040461 141 DVLVLMQEPVLPGCFLRARAIGLMPMIDQGEKDDK---IIAVCADDPEYKHYTDIKELPP 197 (318)
Q Consensus 141 DVlVLg~~p~~pG~Vv~vRvIGvL~MiDeGE~D~K---IIaV~~~DP~~~~i~dI~DLp~ 197 (318)
+.+|.+++|+.+|+.+.+|+.- -+..|. -++|-.-||. .++. +||+
T Consensus 36 ~givFS~RPl~~~E~~~v~I~~-------~~~~wsG~l~~GvT~~dP~--~l~~--~lP~ 84 (168)
T 2yue_A 36 RAITFSARPVRINERICVKFAE-------ISNNWNGGIRFGFTSNDPV--TLEG--TLPK 84 (168)
T ss_dssp CCEEEESSCCCSSCCEEEEEEE-------CCSSSSSCCEEEEESSCGG--GTTT--CCCS
T ss_pred ceEEEECCCCcCCCEEEEEEEe-------ecCCcceeEEEeeeecCHH--HcCC--CCCC
Confidence 5689999999999999999853 233444 5678788885 3432 5665
No 25
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.35 E-value=1e+02 Score=22.02 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHccc-CCC-----ceeEeCeecCHHHHHHHHHHH
Q 040461 199 RLTEIRRFFEDYKK-NEN-----KKVAVNEFLPTSTAVEAIQYS 236 (318)
Q Consensus 199 ~l~eI~~FF~~YK~-leG-----K~v~v~g~~d~e~A~kvI~ea 236 (318)
.-++|+++|..|-. .+. |......|.+.++|.++|++.
T Consensus 21 t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l 64 (93)
T 2cqh_A 21 TADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETL 64 (93)
T ss_dssp CHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHc
Confidence 44788999999987 443 234556788999998887643
No 26
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.15 E-value=1e+02 Score=22.39 Aligned_cols=37 Identities=19% Similarity=0.160 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHcccCC------------CceeEeCeecCHHHHHHHHHH
Q 040461 199 RLTEIRRFFEDYKKNE------------NKKVAVNEFLPTSTAVEAIQY 235 (318)
Q Consensus 199 ~l~eI~~FF~~YK~le------------GK~v~v~g~~d~e~A~kvI~e 235 (318)
.-++|+++|..|-..+ .|......|.+.++|.++|+.
T Consensus 25 t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 2cqb_A 25 DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 73 (102)
T ss_dssp CHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHH
T ss_pred CHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 3578899999985332 123556788999999887764
Done!