BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040462
(726 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 526 bits (1355), Expect = e-149, Method: Compositional matrix adjust.
Identities = 296/631 (46%), Positives = 378/631 (59%), Gaps = 37/631 (5%)
Query: 112 TTRSWDFMGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGK 171
TTRSWDF+G ++ R+ VESNI++GV+D+GIWPES SF DEGF P P KWKG C
Sbjct: 1 TTRSWDFLGFPLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSN 60
Query: 172 NFTCNNKLIGARYYTTD--------GTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTA 223
NF CN K+IGAR Y RD +GHGTHTASTAAG V A+ YG+G GTA
Sbjct: 61 NFRCNRKIIGARSYHIGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTA 120
Query: 224 RGGVPSARIAAYKVCNPSGCASTXXXXXXXXXXXXGVDIITVSLGGNIPVDFIKDAIAIG 283
RGGVP ARIAAYKVC GC+ T GVDII++S+GG P + DAIAIG
Sbjct: 121 RGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIAIG 180
Query: 284 AFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYS 343
+FHA+E+GILT NSAGN G N S++PWL+SVAAST DR FV +V +GNG + G S
Sbjct: 181 SFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVS 240
Query: 344 INSFAMKGKKFPLVHGKEVSESCPEFS-SQACNPGCINSSLVKGKIVMCSKFDGYTEVHK 402
IN+F + +PLV G+++ + + S S+ C +N +L+KGKIV+C G E K
Sbjct: 241 INTF--DNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPHEFFK 298
Query: 403 V--GAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDF 460
GAAG +L + LP+ + + + + Y S + P A I K+ I +
Sbjct: 299 SLDGAAG-VLMTSNTRDYADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTILNA 357
Query: 461 DAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGT 520
APVV FSSRGPN D++KPDIS PGV+ILAA +AP+ +R ++I SGT
Sbjct: 358 SAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVG---GIRRNTLFNIISGT 414
Query: 521 SMACPHXXXXXXYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAV 580
SM+CPH YVK+++P WSP+AI+SA+MTTA PMN+ AE A+GSGHVNP+KAV
Sbjct: 415 SMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNPQAEFAYGSGHVNPLKAV 474
Query: 581 NPGLIYETSKQDYIKILCSIGYNESIVRSISGDNSTCPKGSNKLSAKDLNYPSMAAQVSR 640
PGL+Y+ ++ DY+K LC GYN VR I+GD S C G N DLNYPS VS
Sbjct: 475 RPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSG-NTGRVWDLNYPSFGLSVSP 533
Query: 641 AKPFTVNFPRIVTNVGLANSTYRAKFFQKFTIISXXXXXXXXXXXXXXXGKGLPE----- 695
++ F F R +T+V STYRA +IS GL +
Sbjct: 534 SQTFNQYFNRTLTSVAPQASTYRA-------MISAPQGLTISVNPNVLSFNGLGDRKSFT 586
Query: 696 -------SGTVVPATLVWSDGIHSVRSPIVV 719
G VV A+LVWSDG+H VRSPI +
Sbjct: 587 LTVRGSIKGFVVSASLVWSDGVHYVRSPITI 617
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 331 bits (849), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 240/657 (36%), Positives = 336/657 (51%), Gaps = 66/657 (10%)
Query: 112 TTRSWDFMGLNQS--ITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNG 169
TT + DF+ LN S + + ++I+ V+DSGIWPES SF D+G PK+WKG C
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKP 60
Query: 170 GKNFT---CNNKLIGARYYT------------TDGTARDKDGHGTHTASTAAGNEVKDAS 214
G F CN KLIGA Y+ T +ARD DGHGTH AS AGN K S
Sbjct: 61 GTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVS 120
Query: 215 FYGVGQGTARGGVPSARIAAYKVCNPSGCASTXXXXXXXXXXXXGVDIITVSLGGNIPVD 274
+G GTARG P AR+A YK G ++ GVD+I++S G +
Sbjct: 121 HFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYGYRF-IP 179
Query: 275 FIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLG 334
+DAI+I +F AM KG+L SAGN G +G + + +PW++ VA+ TDR F + LG
Sbjct: 180 LYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLG 239
Query: 335 NGATLSGYSINSFAMKGKKFPLVHGKEVSE-SCPEFSSQACNPGCINSSLVKGKIVMCSK 393
NG + G+S+ + P+++ K +S+ S E SQ NP + IV+C
Sbjct: 240 NGLKIRGWSLFPARAFVRDSPVIYNKTLSDCSSEELLSQVENP--------ENTIVICDD 291
Query: 394 FDGYTEVHKVGAAGSI---LFNDQYEKV--SFVVSLPAVAVSMENFNSLISYKNSTKKPE 448
+++ ++ + +F + V S P V V+ + +I+Y ++ P
Sbjct: 292 NGDFSDQMRIITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPT 351
Query: 449 AEILKTEAIKDFD-APVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSP-LAPISTDP 506
A I E D APVVA S+RGP+ I KPDI APGV ILAA P + S
Sbjct: 352 ATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSIGT 411
Query: 507 EDKRRVKYSIESGTSMACPHXXXXXXYVKSFHPDWSPSAIRSAIMTTAWPMNSSK--VND 564
Y +ESGTSMA PH +K+ HP+WSPSAIRSA+MTTA P+++++ + D
Sbjct: 412 NILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKD 471
Query: 565 AE-------VAFGSGHVNPVKAVNPGLIYETSKQDYIKILCSIGYNE----SIVRSISGD 613
++ + G+GHV+P +A++PGL+Y+ + QDY+ +LCS+ + E +I RS +
Sbjct: 472 SDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASH 531
Query: 614 NSTCPKGSNKLSAKDLNYPSMAAQVSRAKPFTV---NFPRIVTNVGLANSTYRAKF-FQK 669
N + P + DLNYPS A S FT+ F R VTNVG +TY+AK K
Sbjct: 532 NCSNP-------SADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPK 584
Query: 670 FTIISXXXXXXXXXXXXXXXGKGLP--------ESGTVVPATLVWSDGIHSVRSPIV 718
+ IS L +S V T V +G HSVRSPIV
Sbjct: 585 NSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIV 641
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 71/131 (54%), Gaps = 10/131 (7%)
Query: 449 AEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPED 508
++++ A+ +D V+ FSSRGP A + LKP++ APG I+AA + + D
Sbjct: 295 SKVITVGAVDKYD--VITDFSSRGPTA--DNRLKPEVVAPGNWIIAARASGTSMGQPIND 350
Query: 509 KRRVKYSIESGTSMACPHXXXXXXYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVA 568
Y+ GT+MA PH + HP W+P +++A++ TA + ++ A++A
Sbjct: 351 Y----YTAAPGTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETADIVKPDEI--ADIA 404
Query: 569 FGSGHVNPVKA 579
+G+G VN KA
Sbjct: 405 YGAGRVNAYKA 415
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 13/120 (10%)
Query: 190 TARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTXXX 249
T D +GHGTH AS AAG G +G P A++ KV N G S
Sbjct: 173 TPYDDNGHGTHVASIAAGTGA-------ASNGKYKGMAPGAKLVGIKVLNGQGSGSISDI 225
Query: 250 X-----XXXXXXXXGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSN 304
G+ +I +SLG + D D+++ +A + G++ + +AGNSG N
Sbjct: 226 INGVDWAVQNKDKYGIKVINLSLGSSQSSDGT-DSLSQAVNNAWDAGLVVVVAAGNSGPN 284
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 132/541 (24%), Positives = 216/541 (39%), Gaps = 131/541 (24%)
Query: 123 QSITRKHSVESNIIIGVIDSGIWPESESF-----------SDEGFGPAPKKWKGACNGGK 171
+++ K S + ++ VID+G E++ S E A KK G G
Sbjct: 16 KTLQEKASKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKA-KKEHGITYGE- 73
Query: 172 NFTCNNKLIGARYYTTDG-TARDKDGHGTHTASTAAGN---EVKDASFYGVGQGTARGGV 227
N+K+ Y+ DG TA D++ HGTH + +GN E K+ Y + G +
Sbjct: 74 --WVNDKVAYYHDYSKDGKTAVDQE-HGTHVSGILSGNAPSETKEP--YRL-----EGAM 123
Query: 228 PSARIAAYKVCNPSGCA--STXXXXXXXXXXXXGVDIITVSLG------GNIPVDFIKDA 279
P A++ +V +G A + G +I +S G N+P D K A
Sbjct: 124 PEAQLLLMRVEIVNGLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLP-DETKKA 182
Query: 280 IAIGAFHAMEKGILTLNSAGNSGS-------------NLGFVYS--VAPWLMSVAASTTD 324
+A KG+ + SAGN S + G V + A ++VA+ + D
Sbjct: 183 FD----YAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPD 238
Query: 325 RLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSL- 383
+ + ++ + + K+ P++ E + N G
Sbjct: 239 KQLTETA-----------TVKTDDHQAKEMPVLSTNRF-EPNKAYDYAYANRGMKEDDFK 286
Query: 384 -VKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSL 437
VKGKI + + D K GA G +++++Q + F + LP V F
Sbjct: 287 DVKGKIALIERGDIDFKDKIANAKKAGAVGVLIYDNQDK--GFPIELPNVDQMPAAF--- 341
Query: 438 ISYKNSTKKPEAEILKTEAIKD--FDA-PVVAP---------FSSRGPNAILPDILKPDI 485
IS K+ +LK + K F+A P V P FSS G A +KPDI
Sbjct: 342 ISRKDGL------LLKDNSKKTITFNATPKVLPTASDTKLSRFSSWGLTA--DGNIKPDI 393
Query: 486 SAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHXXXXXXYVK----SFHPDW 541
+APG DIL++V+ KY+ SGTSM+ P ++ + +PD
Sbjct: 394 AAPGQDILSSVA-------------NNKYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDM 440
Query: 542 SPSA----IRSAIMTTAWPMNSSKVNDAEVAF------GSGHVNPVKAVNPGLIYETSKQ 591
+PS + +M++A + ++ E A+ G+G V+ KA + +Y T K
Sbjct: 441 TPSERLDLAKKVLMSSATAL----YDEDEKAYFSPRQQGAGAVDAKKA-SAATMYVTDKD 495
Query: 592 D 592
+
Sbjct: 496 N 496
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 27/110 (24%)
Query: 466 APFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACP 525
APFSS GP + D+ APGV I ST P K Y SGTSMA P
Sbjct: 178 APFSSVGP--------ELDVMAPGVSIC---------STLPGGK----YGALSGTSMASP 216
Query: 526 HXXXXXXYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVN 575
H + S HP+W+ + +RS++ TA +K+ D+ +G G +N
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTA-----TKLGDS-FYYGKGLIN 260
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 27/110 (24%)
Query: 466 APFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACP 525
APFSS GP + D+ APGV I ST P K Y SGT+MA P
Sbjct: 178 APFSSVGP--------ELDVMAPGVSIC---------STLPGGK----YGALSGTAMASP 216
Query: 526 HXXXXXXYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVN 575
H + S HP+W+ + +RS++ TA +K+ D+ +G G +N
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTA-----TKLGDS-FYYGKGLIN 260
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 27/110 (24%)
Query: 466 APFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACP 525
A FSS GP + D+ APGV I +ST P +K Y +SGT+MA P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSI---------VSTLPGNK----YGAKSGTAMASP 216
Query: 526 HXXXXXXYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVN 575
H + S HP+W+ + +RS++ T ++K+ D+ +G G +N
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENT-----TTKLGDS-FYYGKGLIN 260
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 27/110 (24%)
Query: 466 APFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACP 525
A FSS GP + D+ APGV I +ST P +K Y +SGT+MA P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSI---------VSTLPGNK----YGAKSGTAMASP 216
Query: 526 HXXXXXXYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVN 575
H + S HP+W+ + +RS++ T ++K+ D+ +G G +N
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENT-----TTKLGDS-FYYGKGLIN 260
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 20/142 (14%)
Query: 450 EILKTEAIKDFDAPVVAPFSSRGPNAILPDILKP-------DISAPGVDI-----LAAVS 497
EI T+A K A + +S N+ LP + P DI+ P V + LA +
Sbjct: 291 EINSTKACKTAGAKGIIVYS----NSALPGLQNPFLVDANSDITVPSVSVDRATGLALKA 346
Query: 498 PLAPISTDPEDKRRVKYSIESGTSMACPHXXXXXXYVKSFHPDWSPSAIRSAIMTTAWPM 557
L ST ++ Y +GTSMA PH V S+HP+ S S +R+A+ TA +
Sbjct: 347 KLGQ-STTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDL 405
Query: 558 NSSKVNDAEVAFGSGHVNPVKA 579
V + G G +N V A
Sbjct: 406 ---SVAGRDNQTGYGMINAVAA 424
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 27/110 (24%)
Query: 466 APFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACP 525
A FSS GP + D+ APGV I ST P +K Y +SGTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIC---------STLPGNK----YGAKSGTSMASP 225
Query: 526 HXXXXXXYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVN 575
H + S HP+W+ + +RS++ T ++K+ D+ +G G +N
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT-----TTKLGDS-FYYGKGLIN 269
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 27/110 (24%)
Query: 466 APFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACP 525
A FSS GP + D+ APGV I ST P +K Y +SGTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIC---------STLPGNK----YGAKSGTSMASP 225
Query: 526 HXXXXXXYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVN 575
H + S HP+W+ + +RS++ T ++K+ D+ +G G +N
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT-----TTKLGDS-FYYGKGLIN 269
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 21/95 (22%)
Query: 466 APFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACP 525
A FSS GP + D+ APGV I ST P +K Y +SGTSMA P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSIC---------STLPGNK----YGAKSGTSMASP 216
Query: 526 HXXXXXXYVKSFHPDWSPSAIRSAIMTTAWPMNSS 560
H + S HP+W+ + +RS++ T + +S
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGNS 251
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 27/110 (24%)
Query: 466 APFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACP 525
A FSS GP + D+ APGV I ST P +K Y +SGTSMA P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSIC---------STLPGNK----YGAKSGTSMASP 216
Query: 526 HXXXXXXYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVN 575
H + S HP+W+ + +RS++ T ++K+ D+ +G G +N
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENT-----TTKLGDS-FYYGKGLIN 260
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 27/110 (24%)
Query: 466 APFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACP 525
A FSS GP + D+ APGV I ST P +K Y +SGTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQ---------STLPGNK----YGAKSGTSMASP 225
Query: 526 HXXXXXXYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVN 575
H + S HP+W+ + +RS++ T ++K+ D+ +G G +N
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT-----TTKLGDS-FYYGKGLIN 269
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 27/110 (24%)
Query: 466 APFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACP 525
A FSS GP + D+ APGV I ST P +K Y SGTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIX---------STLPGNK----YGAYSGTSMASP 225
Query: 526 HXXXXXXYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVN 575
H + S HP+W+ + +RS++ T ++K+ D+ +G G +N
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT-----TTKLGDS-FYYGKGLIN 269
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 27/110 (24%)
Query: 466 APFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACP 525
A FSS GP + D+ APGV I ST P +K Y +SGT MA P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSIC---------STLPGNK----YGAKSGTXMASP 216
Query: 526 HXXXXXXYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVN 575
H + S HP+W+ + +RS++ T ++K+ D+ +G G +N
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENT-----TTKLGDS-FYYGKGLIN 260
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 27/110 (24%)
Query: 466 APFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACP 525
A FSS GP + D+ APGV I ST P +K Y +SGT MA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQ---------STLPGNK----YGAKSGTXMASP 225
Query: 526 HXXXXXXYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVN 575
H + S HP+W+ + +RS++ T ++K+ D+ +G G +N
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT-----TTKLGDS-FYYGKGLIN 269
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 27/110 (24%)
Query: 466 APFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACP 525
A FSS GP + D+ APGV I ST P +K Y +SGT MA P
Sbjct: 175 ASFSSVGP--------ELDVMAPGVSIW---------STLPGNK----YGAKSGTXMASP 213
Query: 526 HXXXXXXYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVN 575
H + S HP+W+ + +RS++ T ++K+ D+ +G G +N
Sbjct: 214 HVAGAAALILSKHPNWTNTQVRSSLENT-----TTKLGDS-FYYGKGLIN 257
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 27/110 (24%)
Query: 466 APFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACP 525
A FSS GP + D+ APGV I ST P +K Y +GTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQ---------STLPGNK----YGAYNGTSMASP 225
Query: 526 HXXXXXXYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVN 575
H + S HP+W+ + +RS++ T ++K+ D+ +G G +N
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLQNT-----TTKLGDS-FYYGKGLIN 269
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 42/88 (47%), Gaps = 21/88 (23%)
Query: 466 APFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACP 525
A FSS GP + D+ APGV I ST P +K Y SGTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIX---------STLPGNK----YGAYSGTSMASP 225
Query: 526 HXXXXXXYVKSFHPDWSPSAIRSAIMTT 553
H + S HP+W+ + +RS++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 27/110 (24%)
Query: 466 APFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACP 525
A FSS GP + D+ APGV I ST P +K Y +GTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQ---------STLPGNK----YGAYNGTSMASP 225
Query: 526 HXXXXXXYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVN 575
H + S HP+W+ + +RS++ T ++K+ D+ +G G +N
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLQNT-----TTKLGDS-FYYGKGLIN 269
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 465 VAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMAC 524
VA FSSRGP +KPD+ APG IL+A S LAP S+ + KY+ GTSMA
Sbjct: 202 VAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAPDSSFWANHDS-KYAYMGGTSMAT 258
Query: 525 P 525
P
Sbjct: 259 P 259
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 27/110 (24%)
Query: 466 APFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACP 525
A FSS GP + D+ APGV I ST P +K Y +GTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQ---------STLPGNK----YGAYNGTSMASP 225
Query: 526 HXXXXXXYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVN 575
H + S HP+W+ + +RS++ T ++K+ D+ +G G +N
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT-----TTKLGDS-FYYGKGLIN 269
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 27/110 (24%)
Query: 466 APFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACP 525
A FSS GP + D+ APGV I ST P +K Y +GTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQ---------STLPGNK----YGAYNGTSMASP 225
Query: 526 HXXXXXXYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVN 575
H + S HP+W+ + +RS++ T ++K+ D+ +G G +N
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT-----TTKLGDS-FYYGKGLIN 269
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 27/110 (24%)
Query: 466 APFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACP 525
A FSS GP + D+ APGV I ST P +K Y +GTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQ---------STLPGNK----YGAYNGTSMASP 225
Query: 526 HXXXXXXYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVN 575
H + S HP+W+ + +RS++ T ++K+ D+ +G G +N
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT-----TTKLGDS-FYYGKGLIN 269
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 27/110 (24%)
Query: 466 APFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACP 525
A FSS GP + D+ APGV I ST P +K Y SGT MA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQ---------STLPGNK----YGAYSGTXMASP 225
Query: 526 HXXXXXXYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVN 575
H + S HP+W+ + +RS++ T ++K+ D+ +G G +N
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT-----TTKLGDS-FYYGKGLIN 269
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 27/110 (24%)
Query: 466 APFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACP 525
A FSS GP + D+ APGV I ST P +K Y SGT MA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQ---------STLPGNK----YGAYSGTXMASP 225
Query: 526 HXXXXXXYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVN 575
H + S HP+W+ + +RS++ T ++K+ D+ +G G +N
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT-----TTKLGDS-FYYGKGLIN 269
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 55/123 (44%), Gaps = 19/123 (15%)
Query: 193 DKDGHGTHTASTAAGNEVKD-ASFYGVGQGTARGGVPSARIAAYKVCNPSGC------AS 245
D++GHGTH A TA + D A YGV P A + AYKV SG A+
Sbjct: 67 DRNGHGTHVAGTALADGGSDQAGIYGV--------APDADLWAYKVLLDSGSGYSDDIAA 118
Query: 246 TXXXXXXXXXXXXGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNL 305
II++SLG + I A+ +A KG+L + +AGNSG +
Sbjct: 119 AIRHAADQATATGTKTIISMSLGSSANNSLISSAV----NYAYSKGVLIVAAAGNSGYSQ 174
Query: 306 GFV 308
G +
Sbjct: 175 GTI 177
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 55/123 (44%), Gaps = 19/123 (15%)
Query: 193 DKDGHGTHTASTAAGNEVKD-ASFYGVGQGTARGGVPSARIAAYKVCNPSGC------AS 245
D++GHGTH A TA + D A YGV P A + AYKV SG A+
Sbjct: 67 DRNGHGTHVAGTALADGGSDQAGIYGV--------APDADLWAYKVLLDSGSGYSDDIAA 118
Query: 246 TXXXXXXXXXXXXGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNL 305
II++SLG + I A+ +A KG+L + +AGNSG +
Sbjct: 119 AIRHAADQATATGTKTIISMSLGSSANNSLISSAV----NYAYSKGVLIVAAAGNSGYSQ 174
Query: 306 GFV 308
G +
Sbjct: 175 GTI 177
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 82/187 (43%), Gaps = 34/187 (18%)
Query: 403 VGAAGSILFNDQ--YEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDF 460
+G+ G +N Q ++ + + +L VA EN N+ ++ S +L A
Sbjct: 176 LGSDGQCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNN----VLSVGATTS- 230
Query: 461 DAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVK--YSIES 518
+ A FS+ G + D++APG DIL+ V D +R V YS +
Sbjct: 231 -RGIRASFSNYG--------VDVDLAAPGQDILSTV--------DSGTRRPVSDAYSFMA 273
Query: 519 GTSMACPHXXXXXXYV----KSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHV 574
GTSMA PH V S + + +P+ ++ +++T P N + A GSG V
Sbjct: 274 GTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGR----LDRALGSGIV 329
Query: 575 NPVKAVN 581
+ AVN
Sbjct: 330 DAEAAVN 336
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 19/92 (20%)
Query: 484 DISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHXXXXXXYVKSFHPDWSP 543
DI APGV++ ST P Y+ +GTSMA PH VK +P WS
Sbjct: 191 DIVAPGVNVQ---------STYPGST----YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 544 SAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVN 575
IR+ + TA + S+ + +GSG VN
Sbjct: 238 VQIRNHLKNTATSLGSTNL------YGSGLVN 263
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 82/187 (43%), Gaps = 34/187 (18%)
Query: 403 VGAAGSILFNDQ--YEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDF 460
+G+ G +N Q ++ + + +L VA EN N+ ++ S +L A
Sbjct: 176 LGSDGQCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNN----VLSVGATTS- 230
Query: 461 DAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVK--YSIES 518
+ A FS+ G + D++APG DIL+ V D +R V YS +
Sbjct: 231 -RGIRASFSNYG--------VDVDLAAPGQDILSTV--------DSGTRRPVSDAYSFMA 273
Query: 519 GTSMACPHXXXXXXYV----KSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHV 574
GTSMA PH V S + + +P+ ++ +++T P N + A GSG V
Sbjct: 274 GTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGR----LDRALGSGIV 329
Query: 575 NPVKAVN 581
+ AVN
Sbjct: 330 DAEAAVN 336
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 27/110 (24%)
Query: 466 APFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACP 525
A FSS GP + D+ APGV I ST P +K Y +GT MA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQ---------STLPGNK----YGAYNGTXMASP 225
Query: 526 HXXXXXXYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVN 575
H + S HP+W+ + +RS++ T ++K+ D+ +G G +N
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT-----TTKLGDS-FYYGKGLIN 269
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 27/110 (24%)
Query: 466 APFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACP 525
A FSS GP + D+ APGV I ST P +K Y +GT MA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQ---------STLPGNK----YGAYNGTXMASP 225
Query: 526 HXXXXXXYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVN 575
H + S HP+W+ + +RS++ T ++K+ D+ +G G +N
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT-----TTKLGDS-FYYGKGLIN 269
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 82/187 (43%), Gaps = 34/187 (18%)
Query: 403 VGAAGSILFNDQ--YEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDF 460
+G+ G +N Q ++ + + +L VA EN N+ ++ S +L A
Sbjct: 176 LGSDGQCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNN----VLSVGATTS- 230
Query: 461 DAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVK--YSIES 518
+ A FS+ G + D++APG DIL+ V D +R V YS +
Sbjct: 231 -RGIRASFSNYG--------VDVDLAAPGQDILSTV--------DSGTRRPVSDAYSFMA 273
Query: 519 GTSMACPHXXXXXXYV----KSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHV 574
GTSMA PH V S + + +P+ ++ +++T P N + A GSG V
Sbjct: 274 GTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGR----LDRALGSGIV 329
Query: 575 NPVKAVN 581
+ AVN
Sbjct: 330 DAEAAVN 336
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 19/92 (20%)
Query: 484 DISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHXXXXXXYVKSFHPDWSP 543
DI APGV++ ST P Y+ +GTSMA PH VK +P WS
Sbjct: 191 DIVAPGVNVQ---------STYPGST----YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 544 SAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVN 575
IR+ + TA + S+ + +GSG VN
Sbjct: 238 VQIRNHLKNTATSLGSTNL------YGSGLVN 263
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 16/146 (10%)
Query: 181 GARYYTTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNP 240
GA + + + +D +GHGTH A T A GV P+A + A KV
Sbjct: 46 GASFVPGEPSTQDGNGHGTHVAGTIAALN-NSIGVLGV--------APNAELYAVKVLGA 96
Query: 241 SGCASTXXXXXXXX-XXXXGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAG 299
SG S G+ + +SLG P ++ A+ A +G+L + ++G
Sbjct: 97 SGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVAASG 152
Query: 300 NSGSNLGFVYSVAPWLMSVAASTTDR 325
NSG+ G + A + ++A TD+
Sbjct: 153 NSGA--GSISYPARYANAMAVGATDQ 176
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 19/92 (20%)
Query: 484 DISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHXXXXXXYVKSFHPDWSP 543
DI APGV++ ST P Y+ +GTSMA PH VK +P WS
Sbjct: 191 DIVAPGVNVQ---------STYPGST----YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 544 SAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVN 575
IR+ + TA + S+ + +GSG VN
Sbjct: 238 VQIRNHLKNTATSLGSTNL------YGSGLVN 263
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 16/146 (10%)
Query: 181 GARYYTTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNP 240
GA + + + +D +GHGTH A T A GV P+A + A KV
Sbjct: 46 GASFVPGEPSTQDGNGHGTHVAGTIAALN-NSIGVLGV--------APNAELYAVKVLGA 96
Query: 241 SGCASTXXXXXXXX-XXXXGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAG 299
SG S G+ + +SLG P ++ A+ A +G+L + ++G
Sbjct: 97 SGGGSNSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVAASG 152
Query: 300 NSGSNLGFVYSVAPWLMSVAASTTDR 325
NSG+ G + A + ++A TD+
Sbjct: 153 NSGA--GSISYPARYANAMAVGATDQ 176
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 19/92 (20%)
Query: 484 DISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHXXXXXXYVKSFHPDWSP 543
DI APGV++ ST P Y+ +GTSMA PH VK +P WS
Sbjct: 191 DIVAPGVNVQ---------STYPGST----YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 544 SAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVN 575
IR+ + TA + S+ + +GSG VN
Sbjct: 238 VQIRNHLKNTATSLGSTNL------YGSGLVN 263
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 63/146 (43%), Gaps = 16/146 (10%)
Query: 181 GARYYTTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNP 240
GA + + + +D +GHGTH A T A GV PSA + A KV
Sbjct: 46 GASFVPGEPSTQDGNGHGTHVAGTIAALN-NSIGVLGV--------APSAELYAVKVLGA 96
Query: 241 SGCASTXXXXXXXX-XXXXGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAG 299
SG S G+ + +SLG P ++ A+ A +G+L + ++G
Sbjct: 97 SGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVAASG 152
Query: 300 NSGSNLGFVYSVAPWLMSVAASTTDR 325
NSG+ G + A + ++A TD+
Sbjct: 153 NSGA--GSISYPARYANAMAVGATDQ 176
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 19/92 (20%)
Query: 484 DISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHXXXXXXYVKSFHPDWSP 543
DI APGV++ ST P Y+ +GTSMA PH VK +P WS
Sbjct: 191 DIVAPGVNVQ---------STYPGST----YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 544 SAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVN 575
IR+ + TA + S+ + +GSG VN
Sbjct: 238 VQIRNHLKNTATSLGSTNL------YGSGLVN 263
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 14/124 (11%)
Query: 181 GARYYTTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNP 240
GA + + + +D +GHGTH A T A GV PSA + A KV
Sbjct: 46 GASFVPGEPSTQDGNGHGTHVAGTIAALN-NSIGVLGV--------APSAELYAVKVLGA 96
Query: 241 SG-CASTXXXXXXXXXXXXGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAG 299
G A + G+ + +SLG P ++ A+ A +G+L + ++G
Sbjct: 97 DGRGAISSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVAASG 152
Query: 300 NSGS 303
NSG+
Sbjct: 153 NSGA 156
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 72/171 (42%), Gaps = 39/171 (22%)
Query: 133 SNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTAR 192
+N+ +G+ID+GI + S +D GG +F + Y TDG
Sbjct: 24 ANVKVGIIDTGI---ASSHTDL-----------KVVGGASF------VSGESYNTDG--- 60
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCAS-TXXXXX 251
+GHGTH A T A + GV P+ + A KV N SG S +
Sbjct: 61 --NGHGTHVAGTVAALD-NTTGVLGV--------APNVSLYAIKVLNSSGSGSYSAIVSG 109
Query: 252 XXXXXXXGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSG 302
G+D+I +SLGG +K A+ A GI+ + +AGNSG
Sbjct: 110 IEWATQNGLDVINMSLGGPSGSTALKQAVD----KAYASGIVVVAAAGNSG 156
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 13/77 (16%)
Query: 484 DISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHXXXXXXYVKSFHPDWSP 543
++ APGV + ST P + Y+ +GTSMA PH + S +P S
Sbjct: 196 EVMAPGVSVY---------STYPSNT----YTSLNGTSMASPHVAGAAALILSKYPTLSA 242
Query: 544 SAIRSAIMTTAWPMNSS 560
S +R+ + +TA + S
Sbjct: 243 SQVRNRLSSTATNLGDS 259
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 465 VAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMAC 524
VA FSSRGP +KPD+ APG IL+A S LAP S+ + KY+ GTS A
Sbjct: 202 VAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAPDSSFWANHDS-KYAYXGGTSXAT 258
Query: 525 P 525
P
Sbjct: 259 P 259
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 27/110 (24%)
Query: 466 APFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACP 525
A FSS GP + D+ APGV I ST P +K Y +GTS A P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQ---------STLPGNK----YGAYNGTSXASP 225
Query: 526 HXXXXXXYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVN 575
H + S HP+W+ + +RS++ T ++K+ D+ +G G +N
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT-----TTKLGDS-FYYGKGLIN 269
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 19/92 (20%)
Query: 484 DISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHXXXXXXYVKSFHPDWSP 543
DI APGV++ ST P Y+ +GT MA PH VK +P WS
Sbjct: 191 DIVAPGVNVQ---------STYPGST----YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 544 SAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVN 575
IR+ + TA + S+ + +GSG VN
Sbjct: 238 VQIRNHLKNTATSLGSTNL------YGSGLVN 263
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 19/92 (20%)
Query: 484 DISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHXXXXXXYVKSFHPDWSP 543
DI APGV++ ST P Y+ +GT MA PH VK +P WS
Sbjct: 191 DIVAPGVNVQ---------STYPGST----YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 544 SAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVN 575
IR+ + TA + S+ + +GSG VN
Sbjct: 238 VQIRNHLKNTATSLGSTNL------YGSGLVN 263
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 16/146 (10%)
Query: 181 GARYYTTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNP 240
GA + + + +D +GHGTH A T A GV P+A + A KV
Sbjct: 46 GASFVPGEPSTQDGNGHGTHVAGTIAALN-NSIGVLGV--------APNAELYAVKVLGA 96
Query: 241 SGCASTXXXXXXXX-XXXXGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAG 299
SG S G+ + +SLG P ++ A+ A +G+L + ++G
Sbjct: 97 SGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVAASG 152
Query: 300 NSGSNLGFVYSVAPWLMSVAASTTDR 325
NSG+ G + A + ++A TD+
Sbjct: 153 NSGA--GSISYPARYANAMAVGATDQ 176
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 19/92 (20%)
Query: 484 DISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHXXXXXXYVKSFHPDWSP 543
DI APGV++ ST P Y+ +GT MA PH VK +P WS
Sbjct: 191 DIVAPGVNVQ---------STYPGST----YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 544 SAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVN 575
IR+ + TA + S+ + +GSG VN
Sbjct: 238 VQIRNHLKNTATSLGSTNL------YGSGLVN 263
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 16/146 (10%)
Query: 181 GARYYTTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNP 240
GA + + + +D +GHGTH A T A D S GV G PSA + A KV
Sbjct: 46 GASFVPGEPSTQDGNGHGTHVAGTIA---ALDNSI-GV-----LGVAPSAELYAVKVLGA 96
Query: 241 SGCASTXXXXXXXX-XXXXGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAG 299
SG + G+ + +SLG P ++ A+ A +G+L + ++G
Sbjct: 97 SGSGAISSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVAASG 152
Query: 300 NSGSNLGFVYSVAPWLMSVAASTTDR 325
NSG+ G + A + ++A TD+
Sbjct: 153 NSGA--GSISYPARYANAMAVGATDQ 176
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 19/92 (20%)
Query: 484 DISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHXXXXXXYVKSFHPDWSP 543
DI APGV++ ST P Y+ +GT MA PH VK +P WS
Sbjct: 191 DIVAPGVNVQ---------STYPGST----YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 544 SAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVN 575
IR+ + TA + S+ + +GSG VN
Sbjct: 238 VQIRNHLKNTATSLGSTNL------YGSGLVN 263
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 16/146 (10%)
Query: 181 GARYYTTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNP 240
GA + + + +D +GHGTH A T A D S GV G PSA + A KV
Sbjct: 46 GASFVPGEPSTQDGNGHGTHVAGTIA---ALDNSI-GV-----LGVAPSAELYAVKVLGA 96
Query: 241 SGCASTXXXXXXXX-XXXXGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAG 299
SG + G+ + +SLG P ++ A+ A +G+L + ++G
Sbjct: 97 SGSGAISSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVAASG 152
Query: 300 NSGSNLGFVYSVAPWLMSVAASTTDR 325
N G+ G + A + ++A TD+
Sbjct: 153 NEGA--GSIDYPARYANAMAVGATDQ 176
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 19/92 (20%)
Query: 484 DISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHXXXXXXYVKSFHPDWSP 543
DI APGV++ ST P Y+ +GTSMA PH VK +P WS
Sbjct: 191 DIVAPGVNVQ---------STYPGST----YASLNGTSMATPHVAGVAALVKQKNPSWSN 237
Query: 544 SAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVN 575
IR+ + TA + ++ + +GSG VN
Sbjct: 238 VQIRNHLKNTATGLGNTNL------YGSGLVN 263
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 63/146 (43%), Gaps = 16/146 (10%)
Query: 181 GARYYTTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNP 240
GA + + + +D +GHGTH A T A GV PSA + A KV
Sbjct: 46 GASFVPGEPSTQDGNGHGTHVAGTIAALN-NSIGVLGV--------APSAELYAVKVLGA 96
Query: 241 SGCASTXXXXXXXX-XXXXGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAG 299
SG S G+ + +SLG P ++ A+ A +G+L + ++G
Sbjct: 97 SGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVAASG 152
Query: 300 NSGSNLGFVYSVAPWLMSVAASTTDR 325
NSG+ G + A + ++A TD+
Sbjct: 153 NSGA--GSISYPARYANAMAVGATDQ 176
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 13/77 (16%)
Query: 484 DISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHXXXXXXYVKSFHPDWSP 543
D+ APGV I ST P Y +GTSMA PH + S HP W+
Sbjct: 197 DVMAPGVSIQ---------STLPGGT----YGAYNGTSMATPHVAGAAALILSKHPTWTN 243
Query: 544 SAIRSAIMTTAWPMNSS 560
+ +R + +TA + SS
Sbjct: 244 AQVRDRLESTATYLGSS 260
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 57/134 (42%), Gaps = 20/134 (14%)
Query: 175 CNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAA 234
C + +G + TD + D+ GHGTH A +A N + YGV P A + A
Sbjct: 51 CKDFTVGTNF--TDNSCTDRQGHGTHVAGSALANGGTGSGVYGV--------APEADLWA 100
Query: 235 YKVCNPSGC------ASTXXXXXXXXXXXXGVDIITVSLGGNIPVDFIKDAIAIGAFHAM 288
YKV G A +I +SLG + I +A+ +A
Sbjct: 101 YKVLGDDGSGYADDIAEAIRHAGDQATALNTKVVINMSLGSSGESSLITNAVD----YAY 156
Query: 289 EKGILTLNSAGNSG 302
+KG+L + +AGNSG
Sbjct: 157 DKGVLIIAAAGNSG 170
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 514 YSIESGTSMACPHXXXXXXYVKSFHPDWSPSAIRSAIMTTAWPMNSS 560
Y+ +GTSMA PH + S HP+ S S +R+ + +TA + SS
Sbjct: 214 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS 260
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 53/128 (41%), Gaps = 11/128 (8%)
Query: 177 NKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYK 236
N + GA + + D +GHGTH A T A + GV PS + A K
Sbjct: 44 NVVGGASFVAGEAYNTDGNGHGTHVAGTVAALD-NTTGVLGV--------APSVSLYAVK 94
Query: 237 VCNPSGCASTXXXXXXXX-XXXXGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTL 295
V N SG S G+D+I +SLGG +K A+ A+ +
Sbjct: 95 VLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASGSTAMKQAVD-NAYARGVVVVAAA 153
Query: 296 NSAGNSGS 303
++GNSGS
Sbjct: 154 GNSGNSGS 161
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 514 YSIESGTSMACPHXXXXXXYVKSFHPDWSPSAIRSAIMTTAWPMNSS 560
Y+ +GTSMA PH + S HP+ S S +R+ + +TA + SS
Sbjct: 214 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS 260
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Query: 177 NKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYK 236
N + GA + + D +GHGTH A T A + GV PS + A K
Sbjct: 44 NVVGGASFVAGEAYNTDGNGHGTHVAGTVAALD-NTTGVLGV--------APSVSLYAVK 94
Query: 237 VCNPSGCASTXXXXXXXX-XXXXGVDIITVSLGGNIPVDFIKDAI 280
V N SG S G+D+I +SLGG +K A+
Sbjct: 95 VLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASGSTAMKQAV 139
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 514 YSIESGTSMACPHXXXXXXYVKSFHPDWSPSAIRSAIMTTAWPMNSS 560
Y+ +GTSMA PH + S HP+ S S +R+ + +TA + SS
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS 259
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Query: 177 NKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYK 236
N + GA + + D +GHGTH A T A + GV PS + A K
Sbjct: 43 NVVGGASFVAGEAYNTDGNGHGTHVAGTVAALD-NTTGVLGV--------APSVSLYAVK 93
Query: 237 VCNPSGCASTXXXXXXXX-XXXXGVDIITVSLGGNIPVDFIKDAI 280
V N SG S G+D+I +SLGG +K A+
Sbjct: 94 VLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASGSTAMKQAV 138
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 514 YSIESGTSMACPHXXXXXXYVKSFHPDWSPSAIRSAIMTTAWPMNSS 560
Y+ +GTSMA PH + S HP+ S S +R+ + +TA + SS
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS 259
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 53/128 (41%), Gaps = 11/128 (8%)
Query: 177 NKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYK 236
N + GA + + D +GHGTH A T A + GV PS + A K
Sbjct: 43 NVVGGASFVAGEAYNTDGNGHGTHVAGTVAALD-NTTGVLGV--------APSVSLYAVK 93
Query: 237 VCNPSGCASTXXXXXXXX-XXXXGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTL 295
V N SG S G+D+I +SLGG +K A+ A+ +
Sbjct: 94 VLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASGSTAMKQAVD-NAYARGVVVVAAA 152
Query: 296 NSAGNSGS 303
++GNSGS
Sbjct: 153 GNSGNSGS 160
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 102/397 (25%), Positives = 155/397 (39%), Gaps = 97/397 (24%)
Query: 175 CNNKLIGARYYTTDG-TARDKDGHGTHTASTAAGN---EVKDASFYGVGQGTARGGVPSA 230
N+K+ Y+ DG TA D++ HGTH + +GN E K+ Y + G P A
Sbjct: 66 VNDKVAYYHDYSKDGKTAVDQE-HGTHVSGILSGNAPSETKEP--YRL-----EGAXPEA 117
Query: 231 RIAAYKVCNPSGCA--STXXXXXXXXXXXXGVDIITVSLG------GNIPVDFIKDAIAI 282
++ +V +G A + G +I S G N+P D K A
Sbjct: 118 QLLLXRVEIVNGLADYARNYAQAIRDAINLGAKVINXSFGNAALAYANLP-DETKKAFD- 175
Query: 283 GAFHAMEKGILTLNSAGNSGS-------------NLGFVYS--VAPWLMSVAASTTDRLF 327
+A KG+ + SAGN S + G V + A ++VA+ + D+
Sbjct: 176 ---YAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQL 232
Query: 328 VDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSL--VK 385
+ V + + + K+ P++ E + N G VK
Sbjct: 233 TETV-----------RVKTADQQDKEXPVLSTNRF-EPNKAYDYAYANRGTKEDDFKDVK 280
Query: 386 GKIVMCSKFD-----GYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISY 440
GKI + + D + K GA G +++++Q F + LP V F IS
Sbjct: 281 GKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQ--DKGFPIELPNVDQXPAAF---ISR 335
Query: 441 KNSTKKPEAEILKTEAIKD--FDA-PVVAP---------FSSRGPNAILPDILKPDISAP 488
K+ +LK K F+A P V P FSS G A +KPDI+AP
Sbjct: 336 KDGL------LLKDNPQKTITFNATPKVLPTASGTKLSRFSSWGLTA--DGNIKPDIAAP 387
Query: 489 GVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACP 525
G DIL++V+ KY+ SGTS + P
Sbjct: 388 GQDILSSVA-------------NNKYAKLSGTSXSAP 411
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 514 YSIESGTSMACPHXXXXXXYVKSFHPDWSPSAIRSAIMTTAWPMNSS 560
Y+ +GTSMA PH + S HP+ S S +R+ + +TA + SS
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS 259
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Query: 177 NKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYK 236
N + GA + + D +GHGTH A T A + GV PS + A K
Sbjct: 43 NVVGGASFVAGEAYNTDGNGHGTHVAGTVAALD-NTTGVLGV--------APSVSLYAVK 93
Query: 237 VCNPSGCASTXXXXXXXX-XXXXGVDIITVSLGGNIPVDFIKDAI 280
V N SG S G+D+I +SLGG +K A+
Sbjct: 94 VLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASGSTAMKQAV 138
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 514 YSIESGTSMACPHXXXXXXYVKSFHPDWSPSAIRSAIMTTAWPMNSS 560
Y+ +GTSMA PH + S HP+ S S +R+ + +TA + SS
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS 259
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 53/128 (41%), Gaps = 11/128 (8%)
Query: 177 NKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYK 236
N + GA + + D +GHGTH A T A + GV PS + A K
Sbjct: 43 NVVGGASFVAGEAYNTDGNGHGTHVAGTVAALD-NTTGVLGV--------APSVSLYAVK 93
Query: 237 VCNPSGCASTXXXXXXXX-XXXXGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTL 295
V N SG S G+D+I +SLGG +K A+ A+ +
Sbjct: 94 VLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASGSTAMKQAVD-NAYARGVVVVAAA 152
Query: 296 NSAGNSGS 303
++GNSGS
Sbjct: 153 GNSGNSGS 160
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 56/153 (36%), Gaps = 26/153 (16%)
Query: 146 PESESFSDEGFGP----APKKWKGACNGGKNFT------------CNNKLIGA-RYYTTD 188
P FS +GP AP+ W A G K++G + D
Sbjct: 3 PNDPYFSSRQYGPQKIQAPQAWDIAEGSGAKIAIVDTGVQSNHPDLAGKVVGGWDFVDND 62
Query: 189 GTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCAS-TX 247
T ++ +GHGTH A AA G P A I A +V + SG + T
Sbjct: 63 STPQNGNGHGTHCAGIAAAVTNNSTGIAGT--------APKASILAVRVLDNSGSGTWTA 114
Query: 248 XXXXXXXXXXXGVDIITVSLGGNIPVDFIKDAI 280
G +I++SLGG + ++ A+
Sbjct: 115 VANGITYAADQGAKVISLSLGGTVGNSGLQQAV 147
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 42/97 (43%), Gaps = 20/97 (20%)
Query: 484 DISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHXXXXXXYVKSFHPDWSP 543
D++APG I + P ST Y+ SGTSMA PH + S S
Sbjct: 201 DVAAPGSWIYSTY----PTST---------YASLSGTSMATPHVAGVAGLLASQGR--SA 245
Query: 544 SAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAV 580
S IR+AI TA K++ + G VN KAV
Sbjct: 246 SNIRAAIENTA-----DKISGTGTYWAKGRVNAYKAV 277
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 514 YSIESGTSMACPHXXXXXXYVKSFHPDWSPSAIRSAIMTTAWPMNSS 560
Y+ +GT MA PH + S HP+ S S +R+ + +TA + SS
Sbjct: 213 YATLNGTXMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS 259
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 53/128 (41%), Gaps = 11/128 (8%)
Query: 177 NKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYK 236
N + GA + + D +GHGTH A T A + GV PS + A K
Sbjct: 43 NVVGGASFVAGEAYNTDGNGHGTHVAGTVAALD-NTTGVLGV--------APSVSLYAVK 93
Query: 237 VCNPSGCASTXXXXXXXX-XXXXGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTL 295
V N SG S G+D+I +SLGG +K A+ A+ +
Sbjct: 94 VLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASGSTAMKQAVD-NAYARGVVVVAAA 152
Query: 296 NSAGNSGS 303
++GNSGS
Sbjct: 153 GNSGNSGS 160
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 56/153 (36%), Gaps = 26/153 (16%)
Query: 146 PESESFSDEGFGP----APKKWKGACNGGKNFT------------CNNKLIGA-RYYTTD 188
P FS +GP AP+ W A G K++G + D
Sbjct: 3 PNDPYFSSRQYGPQKIQAPQAWDIAEGSGAKIAIVDTGVQSNHPDLAGKVVGGWDFVDND 62
Query: 189 GTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCAS-TX 247
T ++ +GHGTH A AA G P A I A +V + SG + T
Sbjct: 63 STPQNGNGHGTHCAGIAAAVTNNSTGIAGT--------APKASILAVRVLDNSGSGTWTA 114
Query: 248 XXXXXXXXXXXGVDIITVSLGGNIPVDFIKDAI 280
G +I++SLGG + ++ A+
Sbjct: 115 VANGITYAADQGAKVISLSLGGTVGNSGLQQAV 147
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 42/97 (43%), Gaps = 20/97 (20%)
Query: 484 DISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHXXXXXXYVKSFHPDWSP 543
D++APG I + P ST Y+ SGTSMA PH + S S
Sbjct: 201 DVAAPGSSIYSTY----PTST---------YASLSGTSMATPHVAGVAGLLASQGR--SA 245
Query: 544 SAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAV 580
S IR+AI TA K++ + G VN KAV
Sbjct: 246 SNIRAAIENTA-----DKISGTGTYWAKGRVNAYKAV 277
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 13/71 (18%)
Query: 484 DISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHXXXXXXYVKSFHPDWSP 543
D+ APGV I ST P Y +GT MA PH + S HP W+
Sbjct: 197 DVMAPGVSIQ---------STLPGGT----YGAYNGTXMATPHVAGAAALILSKHPTWTN 243
Query: 544 SAIRSAIMTTA 554
+ +R + +TA
Sbjct: 244 AQVRDRLESTA 254
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 13/71 (18%)
Query: 484 DISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHXXXXXXYVKSFHPDWSP 543
D+ APGV I ST P Y +GT MA PH + S HP W+
Sbjct: 197 DVMAPGVSIQ---------STLPGGT----YGAYNGTCMATPHVAGAAALILSKHPTWTN 243
Query: 544 SAIRSAIMTTA 554
+ +R + +TA
Sbjct: 244 AQVRDRLESTA 254
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 25/77 (32%)
Query: 450 EILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDK 509
E++ AI D +A FS+R +P++SAPGVDIL ST P+D
Sbjct: 278 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDIL---------STYPDD- 315
Query: 510 RRVKYSIESGTSMACPH 526
Y GT+MA PH
Sbjct: 316 ---SYETLMGTAMATPH 329
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 48/124 (38%), Gaps = 18/124 (14%)
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGT---------ARGGVPSARIA---AYKVCNP 240
D++GHGTH T A D GV G ARG + IA + P
Sbjct: 149 DQNGHGTHVIGTIAALN-NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGP 207
Query: 241 SGCASTXXXXXXXXX-XXXGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAG 299
G A ++I++SLGG ++ D I A GI+ + ++G
Sbjct: 208 DGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMI----IQAYNAGIVIVAASG 263
Query: 300 NSGS 303
N G+
Sbjct: 264 NEGA 267
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 25/77 (32%)
Query: 450 EILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDK 509
E++ AI D +A FS+R +P++SAPGVDIL ST P+D
Sbjct: 278 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDIL---------STYPDD- 315
Query: 510 RRVKYSIESGTSMACPH 526
Y GT+MA PH
Sbjct: 316 ---SYETLMGTAMATPH 329
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 48/124 (38%), Gaps = 18/124 (14%)
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGT---------ARGGVPSARIA---AYKVCNP 240
D++GHGTH T A D GV G ARG + IA + P
Sbjct: 149 DQNGHGTHVIGTIAALN-NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGP 207
Query: 241 SGCASTXXXXXXXXX-XXXGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAG 299
G A ++I++SLGG ++ D I A GI+ + ++G
Sbjct: 208 DGVADKDGDGIIAGDPDADAAEVISMSLGGPADDSYLYDMI----IQAYNAGIVIVAASG 263
Query: 300 NSGS 303
N G+
Sbjct: 264 NEGA 267
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 25/77 (32%)
Query: 450 EILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDK 509
E++ AI D +A FS+R +P++SAPGVDIL ST P+D
Sbjct: 278 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDIL---------STYPDD- 315
Query: 510 RRVKYSIESGTSMACPH 526
Y GT+MA PH
Sbjct: 316 ---SYETLMGTAMATPH 329
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 48/124 (38%), Gaps = 18/124 (14%)
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGT---------ARGGVPSARIA---AYKVCNP 240
D++GHGTH T A D GV G ARG + IA + P
Sbjct: 149 DQNGHGTHVIGTIAALN-NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGP 207
Query: 241 SGCASTXXXXXXXXX-XXXGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAG 299
G A ++I++SLGG ++ D I A GI+ + ++G
Sbjct: 208 DGVADKDGDGIIAGDPDDAAAEVISMSLGGPADDSYLYDMI----IQAYNAGIVIVAASG 263
Query: 300 NSGS 303
N G+
Sbjct: 264 NEGA 267
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 25/89 (28%)
Query: 450 EILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDK 509
E++ AI D +A FS+R +P++SAPGVDIL ST P+D
Sbjct: 209 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDIL---------STYPDD- 246
Query: 510 RRVKYSIESGTSMACPHXXXXXXYVKSFH 538
Y GT+MA PH +++ +
Sbjct: 247 ---SYETLMGTAMATPHVSGVVALIQAAY 272
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 49/124 (39%), Gaps = 18/124 (14%)
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGT---------ARGGVPSARIA---AYKVCNP 240
D++GHGTH T A D GV G ARG + IA A + P
Sbjct: 80 DQNGHGTHVIGTIAALN-NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIAQAILGP 138
Query: 241 SGCASTXXXXXXXXX-XXXGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAG 299
G A ++I++SLGG ++ D I A GI+ + ++G
Sbjct: 139 DGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMI----IQAYNAGIVIVAASG 194
Query: 300 NSGS 303
N G+
Sbjct: 195 NEGA 198
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 25/89 (28%)
Query: 450 EILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDK 509
E++ AI D +A FS+R +P++SAPGVDIL ST P+D
Sbjct: 209 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDIL---------STYPDD- 246
Query: 510 RRVKYSIESGTSMACPHXXXXXXYVKSFH 538
Y GT+MA PH +++ +
Sbjct: 247 ---SYETLMGTAMATPHVSGVVALIQAAY 272
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 25/89 (28%)
Query: 450 EILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDK 509
E++ AI D +A FS+R +P++SAPGVDIL ST P+D
Sbjct: 275 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDIL---------STYPDD- 312
Query: 510 RRVKYSIESGTSMACPHXXXXXXYVKSFH 538
Y GT+MA PH +++ +
Sbjct: 313 ---SYETLMGTAMATPHVSGVVALIQAAY 338
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 48/124 (38%), Gaps = 18/124 (14%)
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGT---------ARGGVPSARIA---AYKVCNP 240
D++GHGTH T A D GV G ARG + IA + P
Sbjct: 146 DQNGHGTHVIGTIAALN-NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGP 204
Query: 241 SGCASTXXXXXXXXX-XXXGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAG 299
G A ++I++SLGG ++ D I A GI+ + ++G
Sbjct: 205 DGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMI----IQAYNAGIVIVAASG 260
Query: 300 NSGS 303
N G+
Sbjct: 261 NEGA 264
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 25/77 (32%)
Query: 450 EILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDK 509
E++ AI D +A FS+R +P++SAPGVDIL ST P+D
Sbjct: 278 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDIL---------STYPDD- 315
Query: 510 RRVKYSIESGTSMACPH 526
Y GT+MA PH
Sbjct: 316 ---SYETLMGTAMATPH 329
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 48/124 (38%), Gaps = 18/124 (14%)
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGT---------ARGGVPSARIA---AYKVCNP 240
D++GHGTH T A D GV G ARG + IA + P
Sbjct: 149 DQNGHGTHVIGTIAALN-NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGP 207
Query: 241 SGCASTXXXXXXXXX-XXXGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAG 299
G A ++I++SLGG ++ D I A GI+ + ++G
Sbjct: 208 DGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMI----IQAYNAGIVIVAASG 263
Query: 300 NSGS 303
N G+
Sbjct: 264 NEGA 267
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 13/116 (11%)
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCAS-TXXXXX 251
D + HGTH A AA E +A+ G A G P+ RI A + + +G + +
Sbjct: 68 DLNNHGTHVAGIAAA-ETNNAT------GIA-GMAPNTRILAVRALDRNGSGTLSDIADA 119
Query: 252 XXXXXXXGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGF 307
G ++I +SLG + +++A+ +A KG + + +AGN+GS+ F
Sbjct: 120 IIYAADSGAEVINLSLGCDCHTTTLENAVN----YAWNKGSVVVAAAGNNGSSTTF 171
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 20/97 (20%)
Query: 484 DISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHXXXXXXYVKSFHPDWSP 543
D+ APGVDI++ ++ +Y+ SGTSMA PH + S +
Sbjct: 202 DVVAPGVDIVSTITGN-------------RYAYMSGTSMASPHVAGLAALLAS--QGRNN 246
Query: 544 SAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAV 580
IR AI TA K++ F G +N AV
Sbjct: 247 IEIRQAIEQTA-----DKISGTGTYFKYGRINSYNAV 278
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 25/89 (28%)
Query: 450 EILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDK 509
E++ AI D +A FS+R +P++SAPGVDIL ST P+D
Sbjct: 200 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDIL---------STYPDD- 237
Query: 510 RRVKYSIESGTSMACPHXXXXXXYVKSFH 538
Y GT+MA PH +++ +
Sbjct: 238 ---SYETLMGTAMATPHVSGVVALIQAAY 263
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 25/89 (28%)
Query: 450 EILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDK 509
E++ AI D +A FS+R +P++SAPGVDIL ST P+D
Sbjct: 198 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDIL---------STYPDD- 235
Query: 510 RRVKYSIESGTSMACPHXXXXXXYVKSFH 538
Y GT+MA PH +++ +
Sbjct: 236 ---SYETLMGTAMATPHVSGVVALIQAAY 261
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 25/89 (28%)
Query: 450 EILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDK 509
E++ AI D +A FS+R +P++SAPGVDIL ST P+D
Sbjct: 198 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDIL---------STYPDD- 235
Query: 510 RRVKYSIESGTSMACPHXXXXXXYVKSFH 538
Y GT MA PH +++ +
Sbjct: 236 ---SYETLMGTXMATPHVSGVVALIQAAY 261
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 25/89 (28%)
Query: 450 EILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDK 509
E++ AI D +A FS+R +P++SAPGVDIL ST P+D
Sbjct: 198 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDIL---------STYPDD- 235
Query: 510 RRVKYSIESGTSMACPHXXXXXXYVKSFH 538
Y GT MA PH +++ +
Sbjct: 236 ---SYETLMGTCMATPHVSGVVALIQAAY 261
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 39/101 (38%), Gaps = 13/101 (12%)
Query: 465 VAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRV-----KYSIESG 519
VA FSSR + APGV IL+ V I + ++ Y G
Sbjct: 328 VAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQG 379
Query: 520 TSMACPHXXXXXXYVKSFHPDWSPSAIRSAIMTTAWPMNSS 560
TSMA PH + P+ P IR + TA+ N +
Sbjct: 380 TSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGN 420
>pdb|1JQE|A Chain A, Crystal Structure Analysis Of Human Histamine
Methyltransferase (Ile105 Polymorphic Variant) Complexed
With Adohcy And Antimalarial Drug Quinacrine
pdb|1JQE|B Chain B, Crystal Structure Analysis Of Human Histamine
Methyltransferase (Ile105 Polymorphic Variant) Complexed
With Adohcy And Antimalarial Drug Quinacrine
pdb|2AOW|A Chain A, Histamine Methyltransferase (Natural Variant I105)
Complexed With The Acetylcholinesterase Inhibitor And
Altzheimer's Disease Drug Tacrine
pdb|2AOW|B Chain B, Histamine Methyltransferase (Natural Variant I105)
Complexed With The Acetylcholinesterase Inhibitor And
Altzheimer's Disease Drug Tacrine
Length = 292
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 78 FNGFAAKLTDLERQKLASMEEVVSVFPSRTLQFHTTRSWDFMGLNQSI 125
+ AK+++LE K A +E S + SR L+ + WDF+ + Q +
Sbjct: 98 YKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQML 145
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 50/122 (40%), Gaps = 26/122 (21%)
Query: 466 APFSSRGPNAILPDILKPDISAPGVDILAA--VSPLAPISTDPEDKRRVKYSIESGTSMA 523
APFS+ G + ++APG +IL+ V P+ R Y +++GTSMA
Sbjct: 236 APFSNYG--------ARVHLAAPGTNILSTIDVGQAGPV--------RSSYGMKAGTSMA 279
Query: 524 CPHXXXXXXYV----KSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKA 579
PH V S +PS + ++ T N + GSG V+ A
Sbjct: 280 APHVSGVAALVISAANSIGKTLTPSELSDILVRTTSRFNGR----LDRGLGSGIVDANAA 335
Query: 580 VN 581
VN
Sbjct: 336 VN 337
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 49/122 (40%), Gaps = 26/122 (21%)
Query: 466 APFSSRGPNAILPDILKPDISAPGVDILAA--VSPLAPISTDPEDKRRVKYSIESGTSMA 523
APFS+ G L +APG +IL+ V P+ R Y +++GTSMA
Sbjct: 236 APFSNYGARVHL--------AAPGTNILSTIDVGQAGPV--------RSSYGMKAGTSMA 279
Query: 524 CPHXXXXXXYV----KSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKA 579
PH V S +PS + ++ T N + GSG V+ A
Sbjct: 280 APHVSGVAALVISAANSIGKTLTPSELSDILVRTTSRFNGR----LDRGLGSGIVDANAA 335
Query: 580 VN 581
VN
Sbjct: 336 VN 337
>pdb|1JQD|A Chain A, Crystal Structure Analysis Of Human Histamine
Methyltransferase (Thr105 Polymorphic Variant) Complexed
With Adohcy And Histamine
pdb|1JQD|B Chain B, Crystal Structure Analysis Of Human Histamine
Methyltransferase (Thr105 Polymorphic Variant) Complexed
With Adohcy And Histamine
pdb|2AOV|A Chain A, Histamine Methyltransferase Complexed With The Antifolate
Drug Metoprine
pdb|2AOV|B Chain B, Histamine Methyltransferase Complexed With The Antifolate
Drug Metoprine
pdb|2AOX|A Chain A, Histamine Methyltransferase (Primary Variant T105)
Complexed With The Acetylcholinesterase Inhibitor And
Altzheimer's Disease Drug Tacrine
pdb|2AOX|B Chain B, Histamine Methyltransferase (Primary Variant T105)
Complexed With The Acetylcholinesterase Inhibitor And
Altzheimer's Disease Drug Tacrine
Length = 292
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 78 FNGFAAKLTDLERQKLASMEEVVSVFPSRTLQFHTTRSWDFMGLNQSI 125
+ AK ++LE K A +E S + SR L+ + WDF+ + Q +
Sbjct: 98 YKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQML 145
>pdb|2AOU|B Chain B, Histamine Methyltransferase Complexed With The
Antimalarial Drug Amodiaquine
Length = 292
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 78 FNGFAAKLTDLERQKLASMEEVVSVFPSRTLQFHTTRSWDFMGLNQSI 125
+ AK ++LE K A +E S + SR L+ + WDF+ + Q +
Sbjct: 98 YKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQML 145
>pdb|2AOT|B Chain B, Histamine Methyltransferase Complexed With The
Antihistamine Drug Diphenhydramine
Length = 292
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 78 FNGFAAKLTDLERQKLASMEEVVSVFPSRTLQFHTTRSWDFMGLNQSI 125
+ AK ++LE K A +E S + SR L+ + WDF+ + Q +
Sbjct: 98 YKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQML 145
>pdb|2AOT|A Chain A, Histamine Methyltransferase Complexed With The
Antihistamine Drug Diphenhydramine
pdb|2AOU|A Chain A, Histamine Methyltransferase Complexed With The
Antimalarial Drug Amodiaquine
Length = 292
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 78 FNGFAAKLTDLERQKLASMEEVVSVFPSRTLQFHTTRSWDFMGLNQSI 125
+ AK ++LE K A +E S + SR L+ + WDF+ + Q +
Sbjct: 98 YKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQML 145
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 62/174 (35%), Gaps = 39/174 (22%)
Query: 136 IIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKD 195
IIGVID+G + ++ GG N T + Y + D +
Sbjct: 44 IIGVIDTGXQVDHPDLAER------------IIGGVNLTTD-------YGGDETNFSDNN 84
Query: 196 GHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTXXXXXXXXX 255
GHGTH A T A E G G G P A + K + G
Sbjct: 85 GHGTHVAGTVAAAE--------TGSGVV-GVAPKADLFIIKALSGDGSGEMGWIAKAIRY 135
Query: 256 XX-------XGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSG 302
+ IIT+SLGG + + DA+ +A+ + + +AGN G
Sbjct: 136 AVDWRGPKGEQMRIITMSLGGPTDSEELHDAVK----YAVSNNVSVVXAAGNEG 185
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 62/174 (35%), Gaps = 39/174 (22%)
Query: 136 IIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKD 195
IIGVID+G + ++ GG N T + Y + D +
Sbjct: 44 IIGVIDTGCQVDHPDLAER------------IIGGVNLTTD-------YGGDETNFSDNN 84
Query: 196 GHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTXXXXXXXXX 255
GHGTH A T A E G G G P A + K + G
Sbjct: 85 GHGTHVAGTVAAAE--------TGSGVV-GVAPKADLFIIKALSGDGSGEMGWIAKAIRY 135
Query: 256 XX-------XGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSG 302
+ IIT+SLGG + + DA+ +A+ + + +AGN G
Sbjct: 136 AVDWRGPKGEQMRIITMSLGGPTDSEELHDAVK----YAVSNNVSVVXAAGNEG 185
>pdb|2BTY|A Chain A, Acetylglutamate Kinase From Thermotoga Maritima Complexed
With Its Inhibitor Arginine
pdb|2BTY|B Chain B, Acetylglutamate Kinase From Thermotoga Maritima Complexed
With Its Inhibitor Arginine
pdb|2BTY|C Chain C, Acetylglutamate Kinase From Thermotoga Maritima Complexed
With Its Inhibitor Arginine
Length = 282
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 572 GHVNPVKAVNPGLIYETSKQDYIKILCSIGYNES 605
G+V VK VNP +++ + DYI ++ +G E
Sbjct: 140 GYVGKVKKVNPEILHALIENDYIPVIAPVGIGED 173
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 62/174 (35%), Gaps = 39/174 (22%)
Query: 136 IIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKD 195
IIGVID+G + ++ GG N T + Y + D +
Sbjct: 44 IIGVIDTGCQVDHPDLAER------------IIGGVNLTTD-------YGGDETNFSDNN 84
Query: 196 GHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTXXXXXXXXX 255
GHGTH A T A E G G G P A + K + G
Sbjct: 85 GHGTHVAGTVAAAE--------TGSGVV-GVAPKADLFIIKALSGDGSGEMGWIAKAIRY 135
Query: 256 XX-------XGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSG 302
+ IIT+SLGG + + DA+ +A+ + + +AGN G
Sbjct: 136 AVDWRGPKGEQMRIITMSLGGPTDSEELHDAVK----YAVSNNVSVVCAAGNEG 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,981,934
Number of Sequences: 62578
Number of extensions: 863162
Number of successful extensions: 2197
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1971
Number of HSP's gapped (non-prelim): 193
length of query: 726
length of database: 14,973,337
effective HSP length: 106
effective length of query: 620
effective length of database: 8,340,069
effective search space: 5170842780
effective search space used: 5170842780
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)