Query 040462
Match_columns 726
No_of_seqs 435 out of 3182
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 08:43:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040462.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040462hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 1.1E-52 2.3E-57 449.1 29.2 285 108-555 1-307 (307)
2 PTZ00262 subtilisin-like prote 100.0 3.3E-50 7.1E-55 447.2 24.1 295 114-586 294-618 (639)
3 cd07479 Peptidases_S8_SKI-1_li 100.0 5.1E-49 1.1E-53 408.5 24.3 243 126-558 1-254 (255)
4 cd05562 Peptidases_S53_like Pe 100.0 1.1E-48 2.5E-53 409.0 24.3 271 129-581 1-274 (275)
5 cd07497 Peptidases_S8_14 Pepti 100.0 3.5E-48 7.5E-53 411.3 25.5 285 132-554 1-311 (311)
6 cd07475 Peptidases_S8_C5a_Pept 100.0 6.4E-48 1.4E-52 419.6 27.3 306 124-581 1-346 (346)
7 cd07478 Peptidases_S8_CspA-lik 100.0 2.6E-47 5.6E-52 424.5 30.0 397 130-572 1-455 (455)
8 cd07489 Peptidases_S8_5 Peptid 100.0 1.4E-46 2.9E-51 403.0 26.3 290 120-584 1-301 (312)
9 cd07476 Peptidases_S8_thiazoli 100.0 1.6E-46 3.5E-51 391.7 25.6 248 125-560 2-255 (267)
10 cd07474 Peptidases_S8_subtilis 100.0 5.7E-45 1.2E-49 387.7 28.2 286 132-579 1-295 (295)
11 cd05561 Peptidases_S8_4 Peptid 100.0 2.1E-45 4.6E-50 377.9 24.1 234 135-572 1-239 (239)
12 cd07483 Peptidases_S8_Subtilis 100.0 2.8E-45 6E-50 388.1 23.8 258 133-555 1-291 (291)
13 cd07493 Peptidases_S8_9 Peptid 100.0 1.2E-44 2.7E-49 378.1 25.5 242 134-555 1-261 (261)
14 cd04857 Peptidases_S8_Tripepti 100.0 2.7E-44 5.8E-49 388.6 27.0 220 192-557 182-412 (412)
15 cd07481 Peptidases_S8_Bacillop 100.0 4.4E-44 9.6E-49 374.5 25.8 247 132-555 1-264 (264)
16 cd07487 Peptidases_S8_1 Peptid 100.0 1.4E-43 3E-48 370.8 26.2 257 132-555 1-264 (264)
17 cd07485 Peptidases_S8_Fervidol 100.0 1.1E-43 2.4E-48 373.3 25.0 263 124-553 1-273 (273)
18 cd07484 Peptidases_S8_Thermita 100.0 1.1E-42 2.4E-47 363.3 25.6 248 114-557 9-259 (260)
19 KOG1153 Subtilisin-related pro 100.0 1.5E-43 3.2E-48 367.6 17.9 326 29-555 77-461 (501)
20 cd04077 Peptidases_S8_PCSK9_Pr 100.0 1.3E-42 2.7E-47 361.8 24.6 232 125-556 17-255 (255)
21 cd07494 Peptidases_S8_10 Pepti 100.0 1.5E-42 3.3E-47 367.2 25.2 257 117-559 6-287 (298)
22 cd04847 Peptidases_S8_Subtilis 100.0 4.9E-43 1.1E-47 371.8 21.2 263 136-555 2-291 (291)
23 cd04842 Peptidases_S8_Kp43_pro 100.0 8.8E-42 1.9E-46 362.8 26.3 277 128-555 2-293 (293)
24 cd07490 Peptidases_S8_6 Peptid 100.0 5.9E-42 1.3E-46 356.6 24.4 253 134-555 1-254 (254)
25 cd07496 Peptidases_S8_13 Pepti 100.0 8.7E-42 1.9E-46 361.2 24.9 250 134-553 1-285 (285)
26 cd07498 Peptidases_S8_15 Pepti 100.0 6.6E-42 1.4E-46 353.6 23.1 240 135-553 1-242 (242)
27 cd07480 Peptidases_S8_12 Pepti 100.0 2.9E-41 6.4E-46 359.0 24.5 263 127-577 2-296 (297)
28 cd04843 Peptidases_S8_11 Pepti 100.0 3E-41 6.4E-46 353.4 23.5 247 120-555 3-277 (277)
29 cd07473 Peptidases_S8_Subtilis 100.0 8.4E-41 1.8E-45 348.9 25.1 249 133-555 2-259 (259)
30 cd07477 Peptidases_S8_Subtilis 100.0 2E-40 4.4E-45 339.5 24.5 226 134-553 1-229 (229)
31 PF00082 Peptidase_S8: Subtila 100.0 3.5E-41 7.5E-46 356.0 17.1 271 136-581 1-282 (282)
32 cd07492 Peptidases_S8_8 Peptid 100.0 1.3E-39 2.9E-44 331.9 23.3 221 134-555 1-222 (222)
33 cd07491 Peptidases_S8_7 Peptid 100.0 6.2E-40 1.3E-44 338.0 20.3 216 132-537 2-229 (247)
34 cd04059 Peptidases_S8_Protein_ 100.0 1.1E-39 2.3E-44 347.5 21.5 251 119-555 26-297 (297)
35 cd07482 Peptidases_S8_Lantibio 100.0 2.9E-39 6.2E-44 343.6 22.8 254 134-553 1-294 (294)
36 cd04848 Peptidases_S8_Autotran 100.0 5.2E-38 1.1E-42 328.7 23.0 243 131-555 1-267 (267)
37 KOG4266 Subtilisin kexin isozy 100.0 4.2E-36 9.2E-41 319.4 26.2 351 32-582 49-466 (1033)
38 cd07488 Peptidases_S8_2 Peptid 100.0 5.4E-33 1.2E-37 285.6 16.4 196 190-553 32-246 (247)
39 cd00306 Peptidases_S8_S53 Pept 100.0 1.8E-31 3.9E-36 273.5 23.4 234 135-553 1-241 (241)
40 KOG1114 Tripeptidyl peptidase 100.0 1.2E-31 2.6E-36 297.3 22.3 239 194-581 309-557 (1304)
41 COG1404 AprE Subtilisin-like s 99.9 3.3E-24 7.1E-29 243.6 23.9 269 124-581 131-420 (508)
42 KOG3526 Subtilisin-like propro 99.9 5.2E-24 1.1E-28 216.4 10.1 407 10-602 9-475 (629)
43 cd04056 Peptidases_S53 Peptida 99.7 2.6E-17 5.6E-22 179.5 15.7 101 222-325 82-198 (361)
44 cd02120 PA_subtilisin_like PA_ 99.1 4.4E-10 9.4E-15 103.9 12.1 116 331-451 2-126 (126)
45 cd02133 PA_C5a_like PA_C5a_lik 99.0 3.6E-09 7.7E-14 100.1 11.5 108 351-475 25-142 (143)
46 PF05922 Inhibitor_I9: Peptida 98.8 6E-09 1.3E-13 88.5 6.6 78 34-111 1-82 (82)
47 COG4934 Predicted protease [Po 98.6 1E-06 2.2E-11 104.8 15.6 163 124-320 219-395 (1174)
48 cd04816 PA_SaNapH_like PA_SaNa 98.2 5.7E-06 1.2E-10 76.0 8.5 80 371-450 29-121 (122)
49 cd04818 PA_subtilisin_1 PA_sub 98.2 9.5E-06 2.1E-10 74.0 9.3 81 369-450 25-117 (118)
50 KOG3525 Subtilisin-like propro 98.1 1.8E-05 3.9E-10 87.7 10.7 157 124-306 24-189 (431)
51 PF02225 PA: PA domain; Inter 98.0 2.8E-06 6.1E-11 75.0 3.2 71 371-441 19-101 (101)
52 cd00538 PA PA: Protease-associ 98.0 2.4E-05 5.1E-10 72.0 8.0 80 370-449 29-124 (126)
53 cd02130 PA_ScAPY_like PA_ScAPY 97.9 9.4E-05 2E-09 67.9 11.2 78 372-450 32-121 (122)
54 cd02122 PA_GRAIL_like PA _GRAI 97.9 6.5E-05 1.4E-09 70.3 9.3 82 370-451 43-138 (138)
55 cd02127 PA_hPAP21_like PA_hPAP 97.8 0.00012 2.6E-09 66.6 9.3 80 371-451 21-116 (118)
56 cd02126 PA_EDEM3_like PA_EDEM3 97.7 0.00012 2.6E-09 67.5 8.1 78 371-449 27-124 (126)
57 cd02129 PA_hSPPL_like PA_hSPPL 97.7 0.00012 2.6E-09 66.4 7.8 76 369-444 28-115 (120)
58 cd02124 PA_PoS1_like PA_PoS1_l 97.7 0.00036 7.7E-09 64.6 11.0 81 369-450 39-128 (129)
59 cd02132 PA_GO-like PA_GO-like: 97.6 0.00038 8.3E-09 65.4 10.3 76 371-449 48-137 (139)
60 cd04813 PA_1 PA_1: Protease-as 97.5 0.00042 9.1E-09 62.9 8.3 74 369-444 25-112 (117)
61 cd02125 PA_VSR PA_VSR: Proteas 97.4 0.00063 1.4E-08 62.7 8.2 80 371-450 22-126 (127)
62 cd04817 PA_VapT_like PA_VapT_l 97.4 0.00064 1.4E-08 63.4 8.0 65 380-444 51-134 (139)
63 cd02123 PA_C_RZF_like PA_C-RZF 97.3 0.0012 2.5E-08 63.1 8.7 76 371-446 50-142 (153)
64 cd04819 PA_2 PA_2: Protease-as 97.3 0.0029 6.3E-08 58.4 10.9 84 351-446 22-122 (127)
65 PF06280 DUF1034: Fn3-like dom 97.1 0.0049 1.1E-07 55.6 11.0 74 645-718 9-112 (112)
66 cd04815 PA_M28_2 PA_M28_2: Pro 95.9 0.023 5E-07 53.0 6.9 71 380-450 34-133 (134)
67 cd02128 PA_TfR PA_TfR: Proteas 94.3 0.065 1.4E-06 52.3 5.0 64 381-444 51-156 (183)
68 cd04822 PA_M28_1_3 PA_M28_1_3: 94.0 0.26 5.6E-06 46.8 8.2 82 353-440 21-131 (151)
69 cd04820 PA_M28_1_1 PA_M28_1_1: 92.2 0.35 7.6E-06 45.1 6.1 58 353-416 23-97 (137)
70 cd04814 PA_M28_1 PA_M28_1: Pro 91.4 0.58 1.3E-05 43.9 6.7 58 352-415 20-100 (142)
71 cd02131 PA_hNAALADL2_like PA_h 87.3 0.62 1.3E-05 43.8 3.6 35 382-416 37-76 (153)
72 KOG2442 Uncharacterized conser 86.7 2 4.4E-05 47.4 7.5 71 381-451 91-175 (541)
73 PF10633 NPCBM_assoc: NPCBM-as 85.9 2.6 5.7E-05 35.0 6.4 47 645-692 6-62 (78)
74 PF14874 PapD-like: Flagellar- 84.9 18 0.0004 31.4 11.7 72 645-720 21-100 (102)
75 cd02121 PA_GCPII_like PA_GCPII 81.7 1.7 3.6E-05 44.1 4.0 36 381-416 67-107 (220)
76 KOG1114 Tripeptidyl peptidase 79.2 1.3 2.9E-05 52.3 2.7 24 129-152 77-100 (1304)
77 PF06030 DUF916: Bacterial pro 68.7 93 0.002 28.3 12.8 62 645-707 28-119 (121)
78 PF15284 PAGK: Phage-encoded v 66.3 5.7 0.00012 31.1 2.5 20 1-20 1-20 (61)
79 cd04821 PA_M28_1_2 PA_M28_1_2: 61.8 13 0.00028 35.6 4.7 37 379-415 43-103 (157)
80 PF11614 FixG_C: IG-like fold 56.7 68 0.0015 28.8 8.4 48 645-693 32-87 (118)
81 PF07172 GRP: Glycine rich pro 55.8 9.3 0.0002 33.3 2.4 21 1-23 1-21 (95)
82 KOG4628 Predicted E3 ubiquitin 55.6 35 0.00075 36.9 7.1 73 372-444 63-150 (348)
83 COG1470 Predicted membrane pro 54.7 1.5E+02 0.0032 33.3 11.7 55 645-699 285-352 (513)
84 COG1470 Predicted membrane pro 53.5 51 0.0011 36.8 8.0 54 645-699 398-461 (513)
85 PF02845 CUE: CUE domain; Int 35.2 36 0.00079 24.5 2.4 24 531-554 5-28 (42)
86 PF00699 Urease_beta: Urease b 33.0 1.2E+02 0.0027 26.4 5.6 41 645-686 18-80 (100)
87 PF08821 CGGC: CGGC domain; I 32.6 1.6E+02 0.0035 26.2 6.6 41 228-270 36-76 (107)
88 KOG3920 Uncharacterized conser 30.7 50 0.0011 31.2 3.1 81 370-451 73-171 (193)
89 PLN03080 Probable beta-xylosid 30.2 2E+02 0.0043 35.1 9.0 71 645-716 685-778 (779)
90 PRK15098 beta-D-glucoside gluc 29.1 1.7E+02 0.0036 35.7 8.1 67 625-692 642-729 (765)
91 COG4808 Uncharacterized protei 29.0 1.2E+02 0.0027 28.0 5.2 37 64-100 89-125 (152)
92 smart00557 IG_FLMN Filamin-typ 25.4 4.2E+02 0.0091 22.5 8.4 59 659-723 31-92 (93)
93 PRK15019 CsdA-binding activato 25.2 66 0.0014 30.4 2.9 31 517-548 79-109 (147)
94 PF04255 DUF433: Protein of un 25.2 58 0.0012 25.2 2.2 38 514-551 11-54 (56)
95 PF08260 Kinin: Insect kinin p 24.6 36 0.00077 15.7 0.5 6 467-472 3-8 (8)
96 TIGR03391 FeS_syn_CsdE cystein 24.3 71 0.0015 29.9 3.0 32 516-548 73-104 (138)
97 PF13940 Ldr_toxin: Toxin Ldr, 21.0 73 0.0016 21.9 1.6 13 522-534 14-26 (35)
98 PRK10299 PhoPQ regulatory prot 21.0 87 0.0019 23.3 2.2 17 1-17 1-17 (47)
99 PRK09296 cysteine desufuration 20.8 91 0.002 29.2 2.9 32 516-548 68-99 (138)
100 PRK13203 ureB urease subunit b 20.6 1.2E+02 0.0025 26.7 3.3 41 645-686 19-81 (102)
101 COG2166 sufE Cysteine desulfur 20.6 87 0.0019 29.4 2.7 31 517-548 74-104 (144)
102 TIGR02745 ccoG_rdxA_fixG cytoc 20.0 2.8E+02 0.0061 31.2 7.1 47 645-692 347-401 (434)
103 COG4856 Uncharacterized protei 20.0 2.7E+02 0.0059 30.4 6.5 46 646-691 92-147 (403)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.1e-52 Score=449.07 Aligned_cols=285 Identities=59% Similarity=0.925 Sum_probs=249.3
Q ss_pred eccccCCCccccccchhhccC-----CCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCccc---CCcee
Q 040462 108 LQFHTTRSWDFMGLNQSITRK-----HSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFT---CNNKL 179 (726)
Q Consensus 108 ~~~~~~~s~~~~g~~~~~w~~-----~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~---~n~kl 179 (726)
++++++++|.|++++ .+|+. +.+|+||+|||||||||++||+|.+.+..+.+..|.+.|..+..+. ||+|+
T Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki 79 (307)
T cd04852 1 YQLHTTRSPDFLGLP-GAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKL 79 (307)
T ss_pred CCccccCCHHHcCCC-CCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeE
Confidence 468899999999999 66664 8899999999999999999999999989999999999999888874 99999
Q ss_pred eeeeecCC-------------CCCCCCCCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCC-CCCH
Q 040462 180 IGARYYTT-------------DGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPS-GCAS 245 (726)
Q Consensus 180 ig~~~~~~-------------~~~~~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~-g~~~ 245 (726)
++.++|.+ ..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++.. .+..
T Consensus 80 ~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~ 159 (307)
T cd04852 80 IGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFG 159 (307)
T ss_pred EEEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccH
Confidence 99999853 345678899999999999999877766677777778999999999999999984 4889
Q ss_pred HHHHHHHHHHHhCCCeEEEeccCCCCCCCccccHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEEeeeccCc
Q 040462 246 TDILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDR 325 (726)
Q Consensus 246 ~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~ 325 (726)
+++++||++|++++++|||||||... ...+.+.+..+++.+.++|++||+||||+|+...+.++..||+++||+++
T Consensus 160 ~~~~~ai~~a~~~g~~Vin~S~G~~~-~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~--- 235 (307)
T cd04852 160 SDILAAIDQAIADGVDVISYSIGGGS-PDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST--- 235 (307)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCC-CCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc---
Confidence 99999999999999999999999873 24566788888889999999999999999988888889999999999742
Q ss_pred ceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCc
Q 040462 326 LFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGA 405 (726)
Q Consensus 326 ~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga 405 (726)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCce
Q 040462 406 AGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDI 485 (726)
Q Consensus 406 ~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI 485 (726)
+||||
T Consensus 236 ---------------------------------------------------------------------------~~~di 240 (307)
T cd04852 236 ---------------------------------------------------------------------------LKPDI 240 (307)
T ss_pred ---------------------------------------------------------------------------Cccce
Confidence 46799
Q ss_pred EeCCccEEeecCCCCCCCCCCCCccccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 040462 486 SAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAW 555 (726)
Q Consensus 486 ~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 555 (726)
+|||++|++++.... ..........|..++|||||||+|||++|||+|++|+|+|.|||++|++||+
T Consensus 241 ~apG~~i~~~~~~~~---~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 241 AAPGVDILAAWTPEG---ADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred eeccCceeecccCcc---ccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999999999987531 1111223457999999999999999999999999999999999999999985
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=3.3e-50 Score=447.19 Aligned_cols=295 Identities=23% Similarity=0.244 Sum_probs=217.2
Q ss_pred CCccc--cccchhhcc--CCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCccc--CCc----eeeeee
Q 040462 114 RSWDF--MGLNQSITR--KHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFT--CNN----KLIGAR 183 (726)
Q Consensus 114 ~s~~~--~g~~~~~w~--~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~--~n~----klig~~ 183 (726)
.+|.+ ++++ .+|+ .+.+|+||+|||||||||++||+|.++-.. -+... .|.++. +++ .+.|..
T Consensus 294 ~qWgLd~i~~~-~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~-n~~el-----~GrdgiDdD~nG~vdd~~G~n 366 (639)
T PTZ00262 294 LQWGLDLTRLD-ETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDV-NVKEL-----HGRKGIDDDNNGNVDDEYGAN 366 (639)
T ss_pred cCcCcchhCch-HHHHHhhccCCCCcEEEEEccCCCCCChhhhhhccc-ccccc-----cCccccccccCCccccccccc
Confidence 44544 3455 5666 356899999999999999999999865211 00001 111110 111 112222
Q ss_pred ecCCCCCCCCCCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCCeE
Q 040462 184 YYTTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGVDI 262 (726)
Q Consensus 184 ~~~~~~~~~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdV 262 (726)
+.++...|.|..||||||||||||...++ .| +.||||+|+|+++|+++..| +..+++++||+||++.|++|
T Consensus 367 fVd~~~~P~D~~GHGTHVAGIIAA~gnN~-------~G-i~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~V 438 (639)
T PTZ00262 367 FVNNDGGPMDDNYHGTHVSGIISAIGNNN-------IG-IVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHM 438 (639)
T ss_pred ccCCCCCCCCCCCcchHHHHHHhccccCC-------Cc-eeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCE
Confidence 22345678899999999999999974321 12 38999999999999998877 88999999999999999999
Q ss_pred EEeccCCCCCCCccccHHHHHHHHHHhCCcEEEEecCCCCCCCCc--------------ccc----CCCceEEEeeeccC
Q 040462 263 ITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGF--------------VYS----VAPWLMSVAASTTD 324 (726)
Q Consensus 263 In~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--------------~~~----~~p~vitVgA~~~~ 324 (726)
||||||... ....+..++.+|.++|++||+||||+|..... +++ ..|++|+|||++.+
T Consensus 439 INmSlG~~~----~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d 514 (639)
T PTZ00262 439 INGSFSFDE----YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKD 514 (639)
T ss_pred EEeccccCC----ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCC
Confidence 999999762 33467778889999999999999999864321 222 24678888886433
Q ss_pred cceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcC
Q 040462 325 RLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVG 404 (726)
Q Consensus 325 ~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G 404 (726)
..
T Consensus 515 ~~------------------------------------------------------------------------------ 516 (639)
T PTZ00262 515 KN------------------------------------------------------------------------------ 516 (639)
T ss_pred CC------------------------------------------------------------------------------
Confidence 10
Q ss_pred ceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCc
Q 040462 405 AAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPD 484 (726)
Q Consensus 405 a~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPD 484 (726)
.....+.||++|.. ++|
T Consensus 517 --------------------------------------------------------~~~s~s~~Snyg~~-------~VD 533 (639)
T PTZ00262 517 --------------------------------------------------------NQYSLSPNSFYSAK-------YCQ 533 (639)
T ss_pred --------------------------------------------------------CcccccccccCCCC-------cce
Confidence 00123455666522 349
Q ss_pred eEeCCccEEeecCCCCCCCCCCCCccccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCC
Q 040462 485 ISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVND 564 (726)
Q Consensus 485 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~~~~~~ 564 (726)
|+|||++|+++++.+ .|..++|||||||||||+||||++++|+|++++|+++|++||.++...
T Consensus 534 IaAPG~dI~St~p~g-------------~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~---- 596 (639)
T PTZ00262 534 LAAPGTNIYSTFPKN-------------SYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPSL---- 596 (639)
T ss_pred EEeCCCCeeeccCCC-------------ceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCC----
Confidence 999999999998754 799999999999999999999999999999999999999999987542
Q ss_pred CCCcCCC-CccCccccCCCcccc
Q 040462 565 AEVAFGS-GHVNPVKAVNPGLIY 586 (726)
Q Consensus 565 ~~~~~G~-G~vn~~~A~~~glv~ 586 (726)
+..+|| |+||+++|++..+-+
T Consensus 597 -~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 597 -KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred -CCccccCcEEcHHHHHHHHHhc
Confidence 233343 899999999866554
No 3
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=5.1e-49 Score=408.47 Aligned_cols=243 Identities=25% Similarity=0.325 Sum_probs=201.4
Q ss_pred ccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhcc
Q 040462 126 TRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTA 205 (726)
Q Consensus 126 w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgia 205 (726)
|+.+++|+||+|||||||||.+||+|.+.. ...+ |.+.....|..||||||||||
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~-------------~~~~------------~~~~~~~~d~~gHGT~VAGiI 55 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVK-------------ERTN------------WTNEKTLDDGLGHGTFVAGVI 55 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccc-------------cccc------------cCCCCCCCCCCCcHHHHHHHH
Confidence 889999999999999999999999997420 0111 112335567889999999999
Q ss_pred ccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCCeEEEeccCCCCCCCccccHHHHHH
Q 040462 206 AGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGA 284 (726)
Q Consensus 206 ag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~a~ 284 (726)
+|+.. .+.||||+|+|+.+|++.+.+ +..++++++|+||+++++||||||||... +...++..++
T Consensus 56 a~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~---~~~~~~~~~~ 121 (255)
T cd07479 56 ASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGGPD---FMDKPFVDKV 121 (255)
T ss_pred HccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccCCC---CCCcHHHHHH
Confidence 99731 138999999999999998876 67788999999999999999999999762 2345666677
Q ss_pred HHHHhCCcEEEEecCCCCCCCCc--cccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCC
Q 040462 285 FHAMEKGILTLNSAGNSGSNLGF--VYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEV 362 (726)
Q Consensus 285 ~~a~~~Gi~vV~AAGN~g~~~~~--~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~ 362 (726)
.++.++|++||+||||+|+...+ .+...+++|+|||++.+
T Consensus 122 ~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~~-------------------------------------- 163 (255)
T cd07479 122 WELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDFD-------------------------------------- 163 (255)
T ss_pred HHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeeccC--------------------------------------
Confidence 78889999999999999975433 46678899999987543
Q ss_pred CCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHh
Q 040462 363 SESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKN 442 (726)
Q Consensus 363 ~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~ 442 (726)
T Consensus 164 -------------------------------------------------------------------------------- 163 (255)
T cd07479 164 -------------------------------------------------------------------------------- 163 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCeEEEeeeeeecCCCCCcccccCCCCCCCC----CCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecc
Q 040462 443 STKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAI----LPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIES 518 (726)
Q Consensus 443 ~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~----~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~s 518 (726)
+.++.|||+|++.. ..+++||||.|||.+|+++.... .|..++
T Consensus 164 --------------------~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~~-------------~~~~~s 210 (255)
T cd07479 164 --------------------DNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLKG-------------GCRALS 210 (255)
T ss_pred --------------------CccccccCCCCCcccccCCCCCcCccEEecCCCeeccccCC-------------CeEEec
Confidence 45688999997532 26788999999999999876543 688999
Q ss_pred cccchhHHHHHHHHHHHhhCC----CCCHHHHHHHHHhccccCC
Q 040462 519 GTSMACPHAAAVAAYVKSFHP----DWSPSAIRSAIMTTAWPMN 558 (726)
Q Consensus 519 GTSmAaP~VAG~aALl~~~~P----~~sp~~Ik~~L~~TA~~i~ 558 (726)
|||||||||||++|||+|++| .++|++||++|++||+++.
T Consensus 211 GTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 211 GTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred cHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 999999999999999999998 7999999999999999875
No 4
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=1.1e-48 Score=408.95 Aligned_cols=271 Identities=27% Similarity=0.241 Sum_probs=206.6
Q ss_pred CCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhccccC
Q 040462 129 HSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGN 208 (726)
Q Consensus 129 ~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag~ 208 (726)
+++|+||+|+|||||||..||++.+..-+..+..+.. ++ ......|..+|||||||||+
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l~~~~~~---------~~----------~~~~~~d~~gHGT~vAgii~-- 59 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGDLPGNVNV---------LG----------DLDGGSGGGDEGRAMLEIIH-- 59 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCCCCcceee---------cc----------ccCCCCCCCchHHHHHHHHh--
Confidence 5789999999999999999986543321212221110 00 02345688999999999984
Q ss_pred cCCCCccccccCcceeecccCceEEEEEeeCCCCCCHHHHHHHHHHHHhCCCeEEEeccCCCCCCCccccHHHHHHHHHH
Q 040462 209 EVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAM 288 (726)
Q Consensus 209 ~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~a~~~a~ 288 (726)
||||+|+|+.+|+. ...+++++||+|++++|++|||||||......+.+..+..++.++.
T Consensus 60 ----------------GvAP~a~l~~~~~~----~~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~~~~~ai~~a~ 119 (275)
T cd05562 60 ----------------DIAPGAELAFHTAG----GGELDFAAAIRALAAAGADIIVDDIGYLNEPFFQDGPIAQAVDEVV 119 (275)
T ss_pred ----------------ccCCCCEEEEEecC----CCHHHHHHHHHHHHHcCCCEEEecccccCCCcccCCHHHHHHHHHH
Confidence 57999999999875 4588999999999999999999999986333334456788888888
Q ss_pred hC-CcEEEEecCCCCCCCC-ccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCCCCC
Q 040462 289 EK-GILTLNSAGNSGSNLG-FVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESC 366 (726)
Q Consensus 289 ~~-Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~ 366 (726)
++ |++||+||||+|+... ..+...|++|+|||++.+.........+.
T Consensus 120 ~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~~~------------------------------- 168 (275)
T cd05562 120 ASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDPAP------------------------------- 168 (275)
T ss_pred HcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccccccc-------------------------------
Confidence 87 9999999999998643 34678999999999875532100000000
Q ss_pred CcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcCCC
Q 040462 367 PEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKK 446 (726)
Q Consensus 367 ~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~ 446 (726)
T Consensus 169 -------------------------------------------------------------------------------- 168 (275)
T cd05562 169 -------------------------------------------------------------------------------- 168 (275)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCc-cEEeecCCCCCCCCCCCCccccceeecccccchhH
Q 040462 447 PEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGV-DILAAVSPLAPISTDPEDKRRVKYSIESGTSMACP 525 (726)
Q Consensus 447 ~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~-~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP 525 (726)
.......+.||+|||+. +..+||||+|||. ++.+.+.. ..|..++|||||||
T Consensus 169 ------------~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~-------------~~~~~~sGTS~AaP 221 (275)
T cd05562 169 ------------GGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDG-------------DGPPNFFGTSAAAP 221 (275)
T ss_pred ------------CCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcC-------------CceeecccchHHHH
Confidence 00002345688899987 7889999999975 44444332 37899999999999
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCCCCCcCCCCccCccccCC
Q 040462 526 HAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVN 581 (726)
Q Consensus 526 ~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~~~~~~~~~~~G~G~vn~~~A~~ 581 (726)
||||++|||+|++|+|++++||++|++||+++.. +..+..||||+||+.+|++
T Consensus 222 ~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~---~g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 222 HAAGVAALVLSANPGLTPADIRDALRSTALDMGE---PGYDNASGSGLVDADRAVA 274 (275)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC---CCCCCCcCcCcccHHHHhh
Confidence 9999999999999999999999999999998764 2356789999999999986
No 5
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.5e-48 Score=411.29 Aligned_cols=285 Identities=26% Similarity=0.204 Sum_probs=192.0
Q ss_pred CCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCC--CCCCCCCCCCcchhhhccccCc
Q 040462 132 ESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTT--DGTARDKDGHGTHTASTAAGNE 209 (726)
Q Consensus 132 G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~--~~~~~D~~gHGThVAgiaag~~ 209 (726)
|+||+|+|||||||++||+|.++... .|.. .|.+...++...++.+ ...+.|++||||||||||||+.
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~------~~d~~~~~~~g~d~~~~~~~~~~D~~gHGThvAGiiag~~ 70 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKL------KFDYKAYLLPGMDKWGGFYVIMYDFFSHGTSCASVAAGRG 70 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----Cccc------ccCcCCCccCCcCCCCCccCCCCCccccchhHHHHHhccC
Confidence 89999999999999999999754210 0100 0101111111111111 1356899999999999999986
Q ss_pred CCCCcccccc-CcceeecccCceEEEEEeeCCCC-CCHHHHHH-------HHHHH--HhCCCeEEEeccCCCCCC----C
Q 040462 210 VKDASFYGVG-QGTARGGVPSARIAAYKVCNPSG-CASTDILA-------AFDDA--IADGVDIITVSLGGNIPV----D 274 (726)
Q Consensus 210 ~~~~~~~G~~-~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~-------ai~~A--~~~gvdVIn~S~G~~~~~----~ 274 (726)
..+.+.+++. ...+.||||+|+|+.+|+++..+ +....+.+ +++|. .+++++|||||||..... .
T Consensus 71 ~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~~~~~~~~~ 150 (311)
T cd07497 71 KMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTGYA 150 (311)
T ss_pred cccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcCCCCccccc
Confidence 4333322211 12359999999999999997543 33333333 33333 367999999999975211 0
Q ss_pred ccccHHHHHHHHH-HhCCcEEEEecCCCCCCCC--ccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCC
Q 040462 275 FIKDAIAIGAFHA-MEKGILTLNSAGNSGSNLG--FVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKG 351 (726)
Q Consensus 275 ~~~~~~~~a~~~a-~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~ 351 (726)
...+..+...+.+ .++|+++|+||||+|+... ..+..++++|+|||++..+..+.+
T Consensus 151 ~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~--------------------- 209 (311)
T cd07497 151 PGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFY--------------------- 209 (311)
T ss_pred cCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchh---------------------
Confidence 1122333333332 3899999999999998643 356688999999998643210000
Q ss_pred ceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeeh
Q 040462 352 KKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSM 431 (726)
Q Consensus 352 ~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~ 431 (726)
.+..
T Consensus 210 ---~~~~------------------------------------------------------------------------- 213 (311)
T cd07497 210 ---LFGY------------------------------------------------------------------------- 213 (311)
T ss_pred ---hhcc-------------------------------------------------------------------------
Confidence 0000
Q ss_pred hhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccc
Q 040462 432 ENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRR 511 (726)
Q Consensus 432 ~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~ 511 (726)
.....+.++.||||||+. ++++||||+|||++|+++.+...... .....
T Consensus 214 --------------------------~~~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i~s~~~~~~~~~---~~~~~ 262 (311)
T cd07497 214 --------------------------LPGGSGDVVSWSSRGPSI--AGDPKPDLAAIGAFAWAPGRVLDSGG---ALDGN 262 (311)
T ss_pred --------------------------ccCCCCCccccccCCCCc--ccCCCCceeccCcceEeecccCCCCc---ccCCC
Confidence 001225689999999998 89999999999999999876542100 01122
Q ss_pred cceeecccccchhHHHHHHHHHHHhhCC------CCCHHHHHHHHHhcc
Q 040462 512 VKYSIESGTSMACPHAAAVAAYVKSFHP------DWSPSAIRSAIMTTA 554 (726)
Q Consensus 512 ~~y~~~sGTSmAaP~VAG~aALl~~~~P------~~sp~~Ik~~L~~TA 554 (726)
..|..++|||||||||||++|||+|++| .++|++||.+|++||
T Consensus 263 ~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 263 EAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred cceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 4799999999999999999999999876 689999999999997
No 6
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=6.4e-48 Score=419.56 Aligned_cols=306 Identities=29% Similarity=0.367 Sum_probs=237.0
Q ss_pred hhccCCC-CCCCcEEEEEcccCCCCCCCCCCCCCCCCCC-----CccccccCCCcccCCceeeeeeecCC-CCC---CCC
Q 040462 124 SITRKHS-VESNIIIGVIDSGIWPESESFSDEGFGPAPK-----KWKGACNGGKNFTCNNKLIGARYYTT-DGT---ARD 193 (726)
Q Consensus 124 ~~w~~~~-~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~-----~~~g~~~~g~~f~~n~klig~~~~~~-~~~---~~D 193 (726)
.+|+++. +|+||+|+|||||||++||+|.+....+... .+...+..+...+.++|++..++|.+ ... ..|
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNNDDILDEDD 80 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCCCCcccccCCCeeEcCCCCCCccCCCCC
Confidence 3788887 9999999999999999999998764332211 22333344445567888888887742 222 347
Q ss_pred CCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCC--CC-CCHHHHHHHHHHHHhCCCeEEEeccCCC
Q 040462 194 KDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNP--SG-CASTDILAAFDDAIADGVDIITVSLGGN 270 (726)
Q Consensus 194 ~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~--~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~~ 270 (726)
..+|||||||||+|...+.. ....+.||||+|+|+.+|+++. .+ +....+++|++++++.|++|||||||..
T Consensus 81 ~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~ 155 (346)
T cd07475 81 GSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGST 155 (346)
T ss_pred CCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 89999999999999854321 1223499999999999999974 33 7888999999999999999999999987
Q ss_pred CCCCccccHHHHHHHHHHhCCcEEEEecCCCCCCCCc----------------cccCCCceEEEeeeccCcceeeEEEeC
Q 040462 271 IPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGF----------------VYSVAPWLMSVAASTTDRLFVDKVLLG 334 (726)
Q Consensus 271 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~----------------~~~~~p~vitVgA~~~~~~~~~~~~~g 334 (726)
.........+..++.++.++|++||+||||+|..... .+...+++|+||+....-
T Consensus 156 ~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~~~--------- 226 (346)
T cd07475 156 AGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANKKV--------- 226 (346)
T ss_pred CCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeeccccc---------
Confidence 4443556778888889999999999999999865432 123456677777654110
Q ss_pred CCceEeeeeeccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecC
Q 040462 335 NGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQ 414 (726)
Q Consensus 335 ~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~ 414 (726)
T Consensus 227 -------------------------------------------------------------------------------- 226 (346)
T cd07475 227 -------------------------------------------------------------------------------- 226 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEe
Q 040462 415 YEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILA 494 (726)
Q Consensus 415 ~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~s 494 (726)
.......++.||+|||+. ..++||||+|||.+|++
T Consensus 227 -------------------------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdi~apG~~i~s 261 (346)
T cd07475 227 -------------------------------------------PNPNGGQMSGFSSWGPTP--DLDLKPDITAPGGNIYS 261 (346)
T ss_pred -------------------------------------------CCCCCCccCCCcCCCCCc--ccCcCCeEEeCCCCeEE
Confidence 001225678999999998 88999999999999999
Q ss_pred ecCCCCCCCCCCCCccccceeecccccchhHHHHHHHHHHHhh----CCCCCHHH----HHHHHHhccccCCCC---CCC
Q 040462 495 AVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSF----HPDWSPSA----IRSAIMTTAWPMNSS---KVN 563 (726)
Q Consensus 495 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~P~~sp~~----Ik~~L~~TA~~i~~~---~~~ 563 (726)
+.... .|..++|||||||+|||++|||+|+ +|.|++.+ ||.+|++||.+.... ...
T Consensus 262 ~~~~~-------------~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~~~~~~~ 328 (346)
T cd07475 262 TVNDN-------------TYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDSEDTKTY 328 (346)
T ss_pred ecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcccccCCCCcc
Confidence 87653 6889999999999999999999998 79999877 788999999964332 223
Q ss_pred CCCCcCCCCccCccccCC
Q 040462 564 DAEVAFGSGHVNPVKAVN 581 (726)
Q Consensus 564 ~~~~~~G~G~vn~~~A~~ 581 (726)
..+..+|+|+||+.+|++
T Consensus 329 ~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 329 YSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred CCccccCcchhcHHHhhC
Confidence 467789999999999985
No 7
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=2.6e-47 Score=424.49 Aligned_cols=397 Identities=22% Similarity=0.242 Sum_probs=256.9
Q ss_pred CCCCCcEEEEEcccCCCCCCCCCC-CCCCCCCCCccccccCCCcccCCceeeeeeecC--------------CCCCCCCC
Q 040462 130 SVESNIIIGVIDSGIWPESESFSD-EGFGPAPKKWKGACNGGKNFTCNNKLIGARYYT--------------TDGTARDK 194 (726)
Q Consensus 130 ~~G~gV~VgVIDtGid~~Hp~f~~-~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~--------------~~~~~~D~ 194 (726)
.+|+||+|||||||||+.||+|.+ +|-+++...|+.....+... ....+...+. +.....|.
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~D~ 77 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPP---GGYYGGGEYTEEIINAALASDNPYDIVPSRDE 77 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCC---ccccCceEEeHHHHHHHHhcCCccccCcCCCC
Confidence 479999999999999999999984 46678888887766543221 1111111111 12345789
Q ss_pred CCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-----------CCHHHHHHHHHHHHhC-----
Q 040462 195 DGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-----------CASTDILAAFDDAIAD----- 258 (726)
Q Consensus 195 ~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-----------~~~~~i~~ai~~A~~~----- 258 (726)
.||||||||||||+..++ ..+.||||+|+|+++|++...+ +..++++.||+|+++.
T Consensus 78 ~GHGThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~~ 149 (455)
T cd07478 78 NGHGTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELN 149 (455)
T ss_pred CCchHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHHhC
Confidence 999999999999985432 2248999999999999998764 5688999999999874
Q ss_pred CCeEEEeccCCCCCCCccccHHHHHHHHHHhC-CcEEEEecCCCCCCCCccccC-CCceEEEeeeccCcceeeEEEeCCC
Q 040462 259 GVDIITVSLGGNIPVDFIKDAIAIGAFHAMEK-GILTLNSAGNSGSNLGFVYSV-APWLMSVAASTTDRLFVDKVLLGNG 336 (726)
Q Consensus 259 gvdVIn~S~G~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~~~~~~-~p~vitVgA~~~~~~~~~~~~~g~g 336 (726)
.++|||||||...+++...++++.++..+.++ |++||+||||+|....+.... .+. ...-.-.+.++.+
T Consensus 150 ~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~---------~~~~~ie~~v~~~ 220 (455)
T cd07478 150 KPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPN---------GETKTVELNVGEG 220 (455)
T ss_pred CCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccC---------CceEEEEEEECCC
Confidence 47899999999877777888999888888766 999999999999854443321 000 0000011222222
Q ss_pred ceEeeeeeccCCCCCceeeEEecCCCCCCC-C------------cCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhc
Q 040462 337 ATLSGYSINSFAMKGKKFPLVHGKEVSESC-P------------EFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKV 403 (726)
Q Consensus 337 ~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~-~------------~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~ 403 (726)
.......++......-...++......... . ......|... ..+....|.-.+.-+ . .-...
T Consensus 221 ~~~~~~eiW~~~~d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y-~~~~~~~g~~~i~i~---~-~~~~~ 295 (455)
T cd07478 221 EKGFNLEIWGDFPDRFSVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYY-YLPEPYTGDQLIFIR---F-KNIKP 295 (455)
T ss_pred CcceEEEEecCCCCEEEEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEEE-cCCCCCCCCeEEEEE---c-cCCCc
Confidence 221112222221111112222211100000 0 0000000000 011112222211111 1 12344
Q ss_pred CceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEee----eeeec--CCCCCcccccCCCCCCCCC
Q 040462 404 GAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILK----TEAIK--DFDAPVVAPFSSRGPNAIL 477 (726)
Q Consensus 404 Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~----~~~~~--~~~~~~~a~fSs~GP~~~~ 477 (726)
|.+-+.+.........+..++|.-.+..++. .++++....+.+++. ...++ +.....++.||||||+.
T Consensus 296 GiW~i~~~~~~~~~g~~~~Wlp~~~~~~~~t----~f~~~~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G~~~-- 369 (455)
T cd07478 296 GIWKIRLTGVSITDGRFDAWLPSRGLLSENT----RFLEPDPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRGPTR-- 369 (455)
T ss_pred cceEEEEEeccCCCceEEEEecCcCcCCCCC----EeecCCCCceEecCCCCCCcEEEEEEeCCCCcccCccCCCcCC--
Confidence 6677777777666667778888766554432 233444444554411 11222 22345699999999998
Q ss_pred CCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecccccchhHHHHHHHHHHHhhC------CCCCHHHHHHHHH
Q 040462 478 PDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFH------PDWSPSAIRSAIM 551 (726)
Q Consensus 478 ~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~------P~~sp~~Ik~~L~ 551 (726)
++++||||+|||++|+++++.+ .|..++|||||||||||++|||+|++ |.|++++||++|+
T Consensus 370 ~~~~kpdi~APG~~i~s~~~~~-------------~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~ 436 (455)
T cd07478 370 DGRIKPDIAAPGVNILTASPGG-------------GYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLI 436 (455)
T ss_pred CCCcCceEEecCCCEEEeecCC-------------cEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHHH
Confidence 8999999999999999998854 79999999999999999999999975 5679999999999
Q ss_pred hccccCCCCCCCCCCCcCCCC
Q 040462 552 TTAWPMNSSKVNDAEVAFGSG 572 (726)
Q Consensus 552 ~TA~~i~~~~~~~~~~~~G~G 572 (726)
+||+++... +.++..||||
T Consensus 437 ~tA~~~~~~--~~pn~~~GyG 455 (455)
T cd07478 437 RGARRRPGD--EYPNPEWGYG 455 (455)
T ss_pred HhCccCCCC--CCCCCCCCCC
Confidence 999988642 3467889998
No 8
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-46 Score=403.03 Aligned_cols=290 Identities=33% Similarity=0.454 Sum_probs=227.9
Q ss_pred ccchhhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcc
Q 040462 120 GLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGT 199 (726)
Q Consensus 120 g~~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGT 199 (726)
|++ .+|+.+.+|+||+|||||+|||++||+|.++ +.+... ...+.+|..++ ........+...+.|..+|||
T Consensus 1 ~v~-~~~~~g~tG~gv~VaViDsGid~~hp~l~~~-~~~~~~-----~~~~~d~~~~~-~~~~~~~~~~~~~~d~~gHGT 72 (312)
T cd07489 1 GVD-KLHAEGITGKGVKVAVVDTGIDYTHPALGGC-FGPGCK-----VAGGYDFVGDD-YDGTNPPVPDDDPMDCQGHGT 72 (312)
T ss_pred Chh-hHHhCCCCCCCCEEEEEECCCCCCChhhhcC-CCCCce-----eccccccCCcc-cccccCCCCCCCCCCCCCcHH
Confidence 355 7999999999999999999999999999864 111100 11122221110 000011112346678899999
Q ss_pred hhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCCeEEEeccCCCCCCCcccc
Q 040462 200 HTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGVDIITVSLGGNIPVDFIKD 278 (726)
Q Consensus 200 hVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~ 278 (726)
||||||++...+ .| +.||||+|+|+.+|+++..+ ...+.+++++++|++++++|||+|||... .+..+
T Consensus 73 ~vAgiia~~~~~----~~-----~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~g~~~--~~~~~ 141 (312)
T cd07489 73 HVAGIIAANPNA----YG-----FTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLGGPS--GWSED 141 (312)
T ss_pred HHHHHHhcCCCC----Cc-----eEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCcCC--CCCCC
Confidence 999999998532 22 38999999999999998666 77888999999999999999999999872 33447
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCCCCCC---ccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceee
Q 040462 279 AIAIGAFHAMEKGILTLNSAGNSGSNLG---FVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFP 355 (726)
Q Consensus 279 ~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~ 355 (726)
.+...+.++.++|+++|+||||+|.... ..+...|++|+||+.+
T Consensus 142 ~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~--------------------------------- 188 (312)
T cd07489 142 PWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD--------------------------------- 188 (312)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec---------------------------------
Confidence 7777888899999999999999987542 3356778999998753
Q ss_pred EEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHH
Q 040462 356 LVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFN 435 (726)
Q Consensus 356 l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~ 435 (726)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCcccccee
Q 040462 436 SLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYS 515 (726)
Q Consensus 436 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~ 515 (726)
+.||++||+. +...||||+|||++++++++... ..|.
T Consensus 189 ------------------------------~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~~~~-----------~~~~ 225 (312)
T cd07489 189 ------------------------------SYFSSWGPTN--ELYLKPDVAAPGGNILSTYPLAG-----------GGYA 225 (312)
T ss_pred ------------------------------CCccCCCCCC--CCCcCccEEcCCCCEEEeeeCCC-----------CceE
Confidence 3578999988 78899999999999999877641 2589
Q ss_pred ecccccchhHHHHHHHHHHHhhC-CCCCHHHHHHHHHhccccCCCCCC------CCCCCcCCCCccCccccCCCcc
Q 040462 516 IESGTSMACPHAAAVAAYVKSFH-PDWSPSAIRSAIMTTAWPMNSSKV------NDAEVAFGSGHVNPVKAVNPGL 584 (726)
Q Consensus 516 ~~sGTSmAaP~VAG~aALl~~~~-P~~sp~~Ik~~L~~TA~~i~~~~~------~~~~~~~G~G~vn~~~A~~~gl 584 (726)
.++|||||||+|||++|||+|++ |.+++.+||++|++||.++..... ..+...+|||+||+.+|++..-
T Consensus 226 ~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~a~~~~~ 301 (312)
T cd07489 226 VLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSALPDLAPVAQQGAGLVNAYKALYATT 301 (312)
T ss_pred eeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccccCCCCHhhcCcceeeHHHHhcCCc
Confidence 99999999999999999999999 999999999999999998654311 2355789999999999999543
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=1.6e-46 Score=391.69 Aligned_cols=248 Identities=25% Similarity=0.299 Sum_probs=207.1
Q ss_pred hccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhc
Q 040462 125 ITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTAST 204 (726)
Q Consensus 125 ~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgi 204 (726)
+|..+++|+||+|||||+|||++||+|.+..+.+....|. ......|..+|||||||+
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~~~~~----------------------~~~~~~~~~gHGT~VAgi 59 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPLFTYAA----------------------AACQDGGASAHGTHVASL 59 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccccCccc----------------------cCCCCCCCCCcHHHHHHH
Confidence 6999999999999999999999999998753322111110 123456788999999999
Q ss_pred cccCcCCCCccccccCcceeecccCceEEEEEeeCCCC--CCHHHHHHHHHHHHhCCCeEEEeccCCCCCCCccccHHHH
Q 040462 205 AAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG--CASTDILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAI 282 (726)
Q Consensus 205 aag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~ 282 (726)
|+|+... .+.||||+|+|+.+|++...+ ++..++++||+||+++|++|||||||...........+..
T Consensus 60 i~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~~~~~~l~~ 129 (267)
T cd07476 60 IFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQTGEADPILAN 129 (267)
T ss_pred HhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCCCCCCCHHHHH
Confidence 9987421 248999999999999987654 5578999999999999999999999976433445567888
Q ss_pred HHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCC
Q 040462 283 GAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEV 362 (726)
Q Consensus 283 a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~ 362 (726)
++.+|.++|+++|+||||+|.....++...|++|+|||++.+
T Consensus 130 a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~-------------------------------------- 171 (267)
T cd07476 130 AVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD-------------------------------------- 171 (267)
T ss_pred HHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC--------------------------------------
Confidence 888999999999999999998877788899999999987533
Q ss_pred CCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHh
Q 040462 363 SESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKN 442 (726)
Q Consensus 363 ~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~ 442 (726)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecccccc
Q 040462 443 STKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSM 522 (726)
Q Consensus 443 ~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSm 522 (726)
+.++.||++|+.. .||||+|||.+|+++.+.+ .|..++||||
T Consensus 172 --------------------~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~~-------------~~~~~sGTS~ 213 (267)
T cd07476 172 --------------------GLPLKFSNWGADY-----RKKGILAPGENILGAALGG-------------EVVRRSGTSF 213 (267)
T ss_pred --------------------CCeeeecCCCCCC-----CCceEEecCCCceeecCCC-------------CeEEeccHHH
Confidence 2346789999754 3889999999999987754 6999999999
Q ss_pred hhHHHHHHHHHHHhhCCC----CCHHHHHHHHHhccccCCCC
Q 040462 523 ACPHAAAVAAYVKSFHPD----WSPSAIRSAIMTTAWPMNSS 560 (726)
Q Consensus 523 AaP~VAG~aALl~~~~P~----~sp~~Ik~~L~~TA~~i~~~ 560 (726)
|||||||++|||+|++|. ++|++||++|++||+++.+.
T Consensus 214 AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~ 255 (267)
T cd07476 214 AAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDPE 255 (267)
T ss_pred HHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCCc
Confidence 999999999999999887 99999999999999998764
No 10
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.7e-45 Score=387.70 Aligned_cols=286 Identities=38% Similarity=0.558 Sum_probs=214.1
Q ss_pred CCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecC----CCCCCCCCCCCcchhhhcccc
Q 040462 132 ESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYT----TDGTARDKDGHGTHTASTAAG 207 (726)
Q Consensus 132 G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~----~~~~~~D~~gHGThVAgiaag 207 (726)
|+||+|||||+||+++||+|.+..+. . .....+++|..++.-....... ......|..+|||||||+|+|
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HGT~vAgiiag 74 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGFP-N-----DKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDATGHGTHVAGIIAG 74 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCCC-C-----CceeeeeECccCCCCcccccccccccccCCCCCCCCcHHHHHHHHhc
Confidence 89999999999999999999854210 0 0011122221111000000000 012244689999999999998
Q ss_pred CcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCCeEEEeccCCCCCCCccccHHHHHHHH
Q 040462 208 NEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFH 286 (726)
Q Consensus 208 ~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~a~~~ 286 (726)
...+ ...+.||||+|+|+.+|+++..+ +...+++++|+|+++++++|||||||... ....+.+..++.+
T Consensus 75 ~~~n--------~~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~--~~~~~~~~~~~~~ 144 (295)
T cd07474 75 NGVN--------VGTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSV--NGPDDPDAIAINN 144 (295)
T ss_pred CCCc--------cCceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC--CCCCCHHHHHHHH
Confidence 7532 12348999999999999998554 88899999999999999999999999862 2245677888889
Q ss_pred HHhCCcEEEEecCCCCCCCCcc--ccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCCC
Q 040462 287 AMEKGILTLNSAGNSGSNLGFV--YSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSE 364 (726)
Q Consensus 287 a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~ 364 (726)
+.++|+++|+||||+|...... +...+++|+||++.....
T Consensus 145 ~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~-------------------------------------- 186 (295)
T cd07474 145 AVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV-------------------------------------- 186 (295)
T ss_pred HHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc--------------------------------------
Confidence 9999999999999998765544 567899999999752200
Q ss_pred CCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcC
Q 040462 365 SCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNST 444 (726)
Q Consensus 365 ~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~ 444 (726)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeEEEeeeeeecCCCCCcccccCCC-CCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecccccch
Q 040462 445 KKPEAEILKTEAIKDFDAPVVAPFSSR-GPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMA 523 (726)
Q Consensus 445 ~~~~~~i~~~~~~~~~~~~~~a~fSs~-GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmA 523 (726)
........|+++ |++. ...+||||+|||++|++++... ...|..++|||||
T Consensus 187 ---------------~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~~-----------~~~~~~~~GTS~A 238 (295)
T cd07474 187 ---------------AEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPGS-----------GTGYARMSGTSMA 238 (295)
T ss_pred ---------------CCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccCC-----------CCceEEeccHHHH
Confidence 000223344444 5554 7889999999999999988753 1378999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCC-CCCCCcCCCCccCcccc
Q 040462 524 CPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKV-NDAEVAFGSGHVNPVKA 579 (726)
Q Consensus 524 aP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~~~~-~~~~~~~G~G~vn~~~A 579 (726)
||+|||++|||+|++|+|++++||++|++||+++..... ...+..+|+|+||+.+|
T Consensus 239 aP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 239 APHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDGVVYPVSRQGAGRVDALRA 295 (295)
T ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCCCcCChhccCcceeccccC
Confidence 999999999999999999999999999999998876422 22457899999999987
No 11
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.1e-45 Score=377.91 Aligned_cols=234 Identities=26% Similarity=0.396 Sum_probs=194.4
Q ss_pred cEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhccccCcCCCCc
Q 040462 135 IIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDAS 214 (726)
Q Consensus 135 V~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag~~~~~~~ 214 (726)
|+|||||||||++||+|.++-. .. +++. .....|..+|||||||||+|+...
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~------------~~------------~~~~-~~~~~~~~~HGT~vAgiia~~~~~--- 52 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVI------------AR------------LFFA-GPGAPAPSAHGTAVASLLAGAGAQ--- 52 (239)
T ss_pred CEEEEEeCCCCCCCcccccCcc------------cc------------ccCC-CCCCCCCCCCHHHHHHHHhCCCCC---
Confidence 7899999999999999975411 01 0111 124567899999999999997421
Q ss_pred cccccCcceeecccCceEEEEEeeCCCC----CCHHHHHHHHHHHHhCCCeEEEeccCCCCCCCccccHHHHHHHHHHhC
Q 040462 215 FYGVGQGTARGGVPSARIAAYKVCNPSG----CASTDILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEK 290 (726)
Q Consensus 215 ~~G~~~G~~~GvAP~A~l~~~kv~~~~g----~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~a~~~a~~~ 290 (726)
. .||||+|+|+.+|++...+ ++..++++||+||++.|++|||||||.. ....++.++.++.++
T Consensus 53 -------~-~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~-----~~~~l~~ai~~a~~~ 119 (239)
T cd05561 53 -------R-PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGP-----PNALLAAAVAAAAAR 119 (239)
T ss_pred -------C-cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCC-----CCHHHHHHHHHHHHC
Confidence 1 6999999999999998642 6788999999999999999999999975 235677778899999
Q ss_pred CcEEEEecCCCCCCC-CccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCCCCCCcC
Q 040462 291 GILTLNSAGNSGSNL-GFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEF 369 (726)
Q Consensus 291 Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 369 (726)
|++||+||||+|+.. ..++...+++|+|++++.+
T Consensus 120 gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~--------------------------------------------- 154 (239)
T cd05561 120 GMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDAR--------------------------------------------- 154 (239)
T ss_pred CCEEEEecCCCCCCCCccCcccCCCceEEEeecCC---------------------------------------------
Confidence 999999999999764 3567788999999986533
Q ss_pred CCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcCCCCeE
Q 040462 370 SSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEA 449 (726)
Q Consensus 370 ~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~ 449 (726)
T Consensus 155 -------------------------------------------------------------------------------- 154 (239)
T cd05561 155 -------------------------------------------------------------------------------- 154 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecccccchhHHHHH
Q 040462 450 EILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAA 529 (726)
Q Consensus 450 ~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG 529 (726)
+.++.||++|+.. ||.|||++|+++.+.+ .|..++|||||||||||
T Consensus 155 -------------~~~~~~s~~g~~~--------di~ApG~~i~~~~~~~-------------~~~~~sGTS~AaP~vaG 200 (239)
T cd05561 155 -------------GRLYREANRGAHV--------DFAAPGVDVWVAAPGG-------------GYRYVSGTSFAAPFVTA 200 (239)
T ss_pred -------------CCccccCCCCCcc--------eEEccccceecccCCC-------------CEEEeCCHHHHHHHHHH
Confidence 3457799999976 9999999999876543 69999999999999999
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCCCCCcCCCC
Q 040462 530 VAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSG 572 (726)
Q Consensus 530 ~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~~~~~~~~~~~G~G 572 (726)
++|||+|++| ++++|||++|++||+++.. +..+..||||
T Consensus 201 ~aAll~~~~p-~~~~~i~~~L~~ta~~~g~---~~~d~~~G~G 239 (239)
T cd05561 201 ALALLLQASP-LAPDDARARLAATAKDLGP---PGRDPVFGYG 239 (239)
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHhhccCC---CCcCCCcCCC
Confidence 9999999999 9999999999999998755 3467789998
No 12
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=2.8e-45 Score=388.09 Aligned_cols=258 Identities=26% Similarity=0.389 Sum_probs=192.6
Q ss_pred CCcEEEEEcccCCCCCCCCCCCCCC---CCC-----CCcccc--ccCCCccc---CCceeeeeeecC---------CCCC
Q 040462 133 SNIIIGVIDSGIWPESESFSDEGFG---PAP-----KKWKGA--CNGGKNFT---CNNKLIGARYYT---------TDGT 190 (726)
Q Consensus 133 ~gV~VgVIDtGid~~Hp~f~~~g~~---~~~-----~~~~g~--~~~g~~f~---~n~klig~~~~~---------~~~~ 190 (726)
|+|+|||||||||++||+|.++.+. +.| ...+|. ...|++|. +.+++++...++ ....
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 80 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEKGYGNNDVNG 80 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCccccccCeeccCCcccccccccCccccccccccccccCC
Confidence 6899999999999999999875221 011 111121 12455553 233344333221 1234
Q ss_pred CCCCCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCCCCHHHHHHHHHHHHhCCCeEEEeccCCC
Q 040462 191 ARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIADGVDIITVSLGGN 270 (726)
Q Consensus 191 ~~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~~gvdVIn~S~G~~ 270 (726)
+.|..+|||||||||++...++ .| +.||||+|+|+.+|++........++++||+||+++|++|||||||..
T Consensus 81 ~~~~~gHGT~VAGiIaa~~~n~-------~g-~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN~S~G~~ 152 (291)
T cd07483 81 PISDADHGTHVAGIIAAVRDNG-------IG-IDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVINMSFGKS 152 (291)
T ss_pred CCCCCCcHHHHHHHHhCcCCCC-------Cc-eEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 4568999999999999975321 12 389999999999999865446788999999999999999999999975
Q ss_pred CCCCccccHHHHHHHHHHhCCcEEEEecCCCCCCCCc---cc--------cCCCceEEEeeeccCcceeeEEEeCCCceE
Q 040462 271 IPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGF---VY--------SVAPWLMSVAASTTDRLFVDKVLLGNGATL 339 (726)
Q Consensus 271 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~--------~~~p~vitVgA~~~~~~~~~~~~~g~g~~~ 339 (726)
. ......+..++..|.++|+++|+||||+|.+... ++ ...+++|+||+++...
T Consensus 153 ~--~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~-------------- 216 (291)
T cd07483 153 F--SPNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY-------------- 216 (291)
T ss_pred C--CCccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC--------------
Confidence 2 1223456777778999999999999999865321 11 1346778887764331
Q ss_pred eeeeeccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCce
Q 040462 340 SGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVS 419 (726)
Q Consensus 340 ~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~ 419 (726)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCC
Q 040462 420 FVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPL 499 (726)
Q Consensus 420 ~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~ 499 (726)
....++.||++|+. +|||.|||++|+++.+.+
T Consensus 217 -----------------------------------------~~~~~~~~Sn~G~~-------~vdi~APG~~i~s~~~~~ 248 (291)
T cd07483 217 -----------------------------------------ENNLVANFSNYGKK-------NVDVFAPGERIYSTTPDN 248 (291)
T ss_pred -----------------------------------------CcccccccCCCCCC-------ceEEEeCCCCeEeccCcC
Confidence 01246889999974 359999999999987654
Q ss_pred CCCCCCCCCccccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 040462 500 APISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAW 555 (726)
Q Consensus 500 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 555 (726)
.|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 249 -------------~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 249 -------------EYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred -------------CeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 7999999999999999999999999999999999999999984
No 13
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.2e-44 Score=378.08 Aligned_cols=242 Identities=32% Similarity=0.377 Sum_probs=196.2
Q ss_pred CcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCC-CCCC-CCCCCCcchhhhccccCcCC
Q 040462 134 NIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTT-DGTA-RDKDGHGTHTASTAAGNEVK 211 (726)
Q Consensus 134 gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~-~~~~-~D~~gHGThVAgiaag~~~~ 211 (726)
||+||||||||+++||+|..... .++.++++.++|.+ ...+ .|..+|||||||+|+|+..
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~-----------------~~~~~i~~~~~~~~~~~~~~~~~~~HGT~vagiia~~~~- 62 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL-----------------FKNLRILGEYDFVDNSNNTNYTDDDHGTAVLSTMAGYTP- 62 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc-----------------ccCCceeeeecCccCCCCCCCCCCCchhhhheeeeeCCC-
Confidence 79999999999999999953210 12345555565532 2233 6789999999999999742
Q ss_pred CCccccccCcceeecccCceEEEEEeeCCCC---CCHHHHHHHHHHHHhCCCeEEEeccCCCCCCCc-----------cc
Q 040462 212 DASFYGVGQGTARGGVPSARIAAYKVCNPSG---CASTDILAAFDDAIADGVDIITVSLGGNIPVDF-----------IK 277 (726)
Q Consensus 212 ~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~-----------~~ 277 (726)
+...||||+|+|+.+|+..... ....+++.|++++.+.|++|||||||....... ..
T Consensus 63 ---------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~~~~~~~~~~ 133 (261)
T cd07493 63 ---------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTYADMDGKT 133 (261)
T ss_pred ---------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCcccccccccccccc
Confidence 2348999999999999876432 456678999999999999999999997632111 12
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCCCCC---CCccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCcee
Q 040462 278 DAIAIGAFHAMEKGILTLNSAGNSGSN---LGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKF 354 (726)
Q Consensus 278 ~~~~~a~~~a~~~Gi~vV~AAGN~g~~---~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~ 354 (726)
..+..++..+.++|+++|+||||+|.. ...++...+++|+|||.+.+
T Consensus 134 ~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~~------------------------------ 183 (261)
T cd07493 134 SFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDAN------------------------------ 183 (261)
T ss_pred hHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEeccC------------------------------
Confidence 457778888999999999999999987 34567788999999986533
Q ss_pred eEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhH
Q 040462 355 PLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENF 434 (726)
Q Consensus 355 ~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~ 434 (726)
T Consensus 184 -------------------------------------------------------------------------------- 183 (261)
T cd07493 184 -------------------------------------------------------------------------------- 183 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccce
Q 040462 435 NSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKY 514 (726)
Q Consensus 435 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y 514 (726)
+.++.||++||+. ++++||||+|||.+|++.... ..|
T Consensus 184 ----------------------------~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~~-------------~~~ 220 (261)
T cd07493 184 ----------------------------GNKASFSSIGPTA--DGRLKPDVMALGTGIYVINGD-------------GNI 220 (261)
T ss_pred ----------------------------CCCCccCCcCCCC--CCCcCCceEecCCCeEEEcCC-------------CcE
Confidence 3567899999987 889999999999999985443 368
Q ss_pred eecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 040462 515 SIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAW 555 (726)
Q Consensus 515 ~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 555 (726)
..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 221 ~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 221 TYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred EeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999985
No 14
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=2.7e-44 Score=388.59 Aligned_cols=220 Identities=27% Similarity=0.312 Sum_probs=166.7
Q ss_pred CCCCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCC-C--CCHHHHHHHHHHHHhCCCeEEEeccC
Q 040462 192 RDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPS-G--CASTDILAAFDDAIADGVDIITVSLG 268 (726)
Q Consensus 192 ~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~-g--~~~~~i~~ai~~A~~~gvdVIn~S~G 268 (726)
.|+.+|||||||||||+..+ .+.+.||||+|+|+.+|+++.. + +...++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~--------~~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPE--------EPERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCC--------CCceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 46789999999999998432 1234899999999999998754 2 34467999999999999999999999
Q ss_pred CCCCCCccccHHHHHHHH-HHhCCcEEEEecCCCCCCCCccc--c-CCCceEEEeeeccCcceeeEEEeCCCceEeeeee
Q 040462 269 GNIPVDFIKDAIAIGAFH-AMEKGILTLNSAGNSGSNLGFVY--S-VAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSI 344 (726)
Q Consensus 269 ~~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~~~~--~-~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~ 344 (726)
....... ...+..++.+ +.++||++|+||||+|+...++. . ..+++|+|||+...........+
T Consensus 254 ~~~~~~~-~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~y~~----------- 321 (412)
T cd04857 254 EATHWPN-SGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAEYSL----------- 321 (412)
T ss_pred cCCCCcc-chHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCcccccccc-----------
Confidence 8732221 1233334433 44789999999999998776643 2 46899999997533211000000
Q ss_pred ccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeee
Q 040462 345 NSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSL 424 (726)
Q Consensus 345 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ 424 (726)
.
T Consensus 322 ------------~------------------------------------------------------------------- 322 (412)
T cd04857 322 ------------R------------------------------------------------------------------- 322 (412)
T ss_pred ------------c-------------------------------------------------------------------
Confidence 0
Q ss_pred eEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCC
Q 040462 425 PAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPIST 504 (726)
Q Consensus 425 p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~ 504 (726)
....+.++.||||||+. ++.+||||+|||+.|.+.-...
T Consensus 323 ----------------------------------~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~~~----- 361 (412)
T cd04857 323 ----------------------------------EKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIASVPNWT----- 361 (412)
T ss_pred ----------------------------------cccCCccccccccCCcc--cCCcCceEEeCCCcEEEcccCC-----
Confidence 01125678999999998 9999999999999998752111
Q ss_pred CCCCccccceeecccccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHhccccC
Q 040462 505 DPEDKRRVKYSIESGTSMACPHAAAVAAYVKS----FHPDWSPSAIRSAIMTTAWPM 557 (726)
Q Consensus 505 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~~sp~~Ik~~L~~TA~~i 557 (726)
...|..|+|||||||||||++|||++ .+|+|+|.+||.+|++||+++
T Consensus 362 ------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 362 ------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred ------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 13689999999999999999999975 479999999999999999874
No 15
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=4.4e-44 Score=374.48 Aligned_cols=247 Identities=32% Similarity=0.389 Sum_probs=196.8
Q ss_pred CCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhccccCcCC
Q 040462 132 ESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVK 211 (726)
Q Consensus 132 G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag~~~~ 211 (726)
|+||+|||||+||+++||+|.+. +.+ .+.+.....+++.+ .......+.|..+|||||||||+|....
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~-~~~---~~~~~~~~~~~~~d--------~~~~~~~~~d~~~HGT~vagii~g~~~~ 68 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK-YRG---WGGGSADHDYNWFD--------PVGNTPLPYDDNGHGTHTMGTMVGNDGD 68 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc-ccc---cCCCCccccccccc--------CCCCCCCCCCCCCchhhhhhheeecCCC
Confidence 89999999999999999999865 110 00010111111000 0011345678899999999999987421
Q ss_pred CCccccccCcceeecccCceEEEEEeeCCCCCCHHHHHHHHHHHHh------------CCCeEEEeccCCCCCCCccccH
Q 040462 212 DASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIA------------DGVDIITVSLGGNIPVDFIKDA 279 (726)
Q Consensus 212 ~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~------------~gvdVIn~S~G~~~~~~~~~~~ 279 (726)
+...||||+|+|+.+|+++..+++..+++++++++++ .|++|||||||.... ....
T Consensus 69 ---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~~~~---~~~~ 136 (264)
T cd07481 69 ---------GQQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSG---DNEW 136 (264)
T ss_pred ---------CCceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCcCCC---CchH
Confidence 1128999999999999998877888999999999975 789999999998722 3345
Q ss_pred HHHHHHHHHhCCcEEEEecCCCCCCCCc---cccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeE
Q 040462 280 IAIGAFHAMEKGILTLNSAGNSGSNLGF---VYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPL 356 (726)
Q Consensus 280 ~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l 356 (726)
+..++..+.++|++||+||||++..... ++...|++|+||+.+.+
T Consensus 137 ~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~-------------------------------- 184 (264)
T cd07481 137 LQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN-------------------------------- 184 (264)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC--------------------------------
Confidence 5666668889999999999999876433 56788999999986543
Q ss_pred EecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHH
Q 040462 357 VHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNS 436 (726)
Q Consensus 357 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~ 436 (726)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceee
Q 040462 437 LISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSI 516 (726)
Q Consensus 437 l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~ 516 (726)
+.++.||++||.. .+.+||||+|||.+|+++++.+ .|..
T Consensus 185 --------------------------~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~~~~~-------------~~~~ 223 (264)
T cd07481 185 --------------------------DVLADFSSRGPST--YGRIKPDISAPGVNIRSAVPGG-------------GYGS 223 (264)
T ss_pred --------------------------CCCccccCCCCCC--CCCcCceEEECCCCeEEecCCC-------------ceEe
Confidence 4567899999987 6899999999999999998764 6899
Q ss_pred cccccchhHHHHHHHHHHHhhCCC--CCHHHHHHHHHhccc
Q 040462 517 ESGTSMACPHAAAVAAYVKSFHPD--WSPSAIRSAIMTTAW 555 (726)
Q Consensus 517 ~sGTSmAaP~VAG~aALl~~~~P~--~sp~~Ik~~L~~TA~ 555 (726)
++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 224 ~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 224 SSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred eCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999 999999999999985
No 16
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-43 Score=370.84 Aligned_cols=257 Identities=28% Similarity=0.419 Sum_probs=207.9
Q ss_pred CCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhccccCcCC
Q 040462 132 ESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVK 211 (726)
Q Consensus 132 G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag~~~~ 211 (726)
|+||+|+|||+||+++||+|.+.... .+ ++... ........|..+|||||||+|+|....
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~----~~--------~~~~~--------~~~~~~~~d~~~HGT~vAgiiag~~~~ 60 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR----FA--------DFVNT--------VNGRTTPYDDNGHGTHVAGIIAGSGRA 60 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc----cc--------ccccc--------ccCCCCCCCCCCchHHHHHHHhcCCcc
Confidence 89999999999999999999875211 01 11000 012346677889999999999998532
Q ss_pred CCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhC----CCeEEEeccCCCCCCCccccHHHHHHHH
Q 040462 212 DASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIAD----GVDIITVSLGGNIPVDFIKDAIAIGAFH 286 (726)
Q Consensus 212 ~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~----gvdVIn~S~G~~~~~~~~~~~~~~a~~~ 286 (726)
. .+.+.||||+|+|+.+|+++..+ ....++++||+|+++. +++|||+|||.........+.+..++.+
T Consensus 61 ~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~~~~~~~~~~~~~~ 133 (264)
T cd07487 61 S-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQAVER 133 (264)
T ss_pred c-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCCCCCCCHHHHHHHH
Confidence 1 22349999999999999998876 7888999999999998 9999999999884445677888899999
Q ss_pred HHhCCcEEEEecCCCCCCCC--ccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCCC
Q 040462 287 AMEKGILTLNSAGNSGSNLG--FVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSE 364 (726)
Q Consensus 287 a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~ 364 (726)
+.++|++||+||||++.... ..+...+++|+||+++.+..
T Consensus 134 ~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~-------------------------------------- 175 (264)
T cd07487 134 LWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP-------------------------------------- 175 (264)
T ss_pred HHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC--------------------------------------
Confidence 99999999999999998775 55678899999999765521
Q ss_pred CCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcC
Q 040462 365 SCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNST 444 (726)
Q Consensus 365 ~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~ 444 (726)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecccccchh
Q 040462 445 KKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMAC 524 (726)
Q Consensus 445 ~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAa 524 (726)
....++.||++||+. ++++||||+|||++|+++.+..... .......|..++||||||
T Consensus 176 ----------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~~----~~~~~~~~~~~~GTS~Aa 233 (264)
T cd07487 176 ----------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGNP----GAGVGSGYFEMSGTSMAT 233 (264)
T ss_pred ----------------CCccccccccCCCCC--CCCcCCCEEccccceEecccccccc----CCCCCCceEeccccchHH
Confidence 002468899999998 8999999999999999986543111 112235789999999999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 040462 525 PHAAAVAAYVKSFHPDWSPSAIRSAIMTTAW 555 (726)
Q Consensus 525 P~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 555 (726)
|+|||++|||+|++|.+++.+||++|++||+
T Consensus 234 p~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 234 PHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred HHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 9999999999999999999999999999985
No 17
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=1.1e-43 Score=373.29 Aligned_cols=263 Identities=30% Similarity=0.346 Sum_probs=202.6
Q ss_pred hhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhh
Q 040462 124 SITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTAS 203 (726)
Q Consensus 124 ~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAg 203 (726)
.+|..+.+|+||+|+|||||||++||+|.+........ .+.....+..+. -+......|..||||||||
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~~~----~~~~~~~~~~~~-------~~~~~~~~~~~gHGT~VAg 69 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGDGYD----PAVNGYNFVPNV-------GDIDNDVSVGGGHGTHVAG 69 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCCCcc----cccCCccccccc-------CCcCCCCCCCCCCHHHHHH
Confidence 37999999999999999999999999998761110000 001111111000 0012345678899999999
Q ss_pred ccccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCCeEEEeccCCCCCCCccccHHHH
Q 040462 204 TAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAI 282 (726)
Q Consensus 204 iaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~ 282 (726)
||+++.......-|.+ .+.|+||+|+|+.+|++...+ +...+++++|+++++.|++|||||||.. ....+...+..
T Consensus 70 iia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~-~~~~~~~~~~~ 146 (273)
T cd07485 70 TIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGT-GGGIYSPLLKD 146 (273)
T ss_pred HHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCC-CccccCHHHHH
Confidence 9999753322111111 236799999999999998765 7888999999999999999999999987 22334556777
Q ss_pred HHHHHHhC-------CcEEEEecCCCCCCCCccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceee
Q 040462 283 GAFHAMEK-------GILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFP 355 (726)
Q Consensus 283 a~~~a~~~-------Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~ 355 (726)
++..+.++ |++||+||||++......+...|++|+||+++.+
T Consensus 147 a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~------------------------------- 195 (273)
T cd07485 147 AFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN------------------------------- 195 (273)
T ss_pred HHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC-------------------------------
Confidence 77788887 9999999999998877778889999999997543
Q ss_pred EEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHH
Q 040462 356 LVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFN 435 (726)
Q Consensus 356 l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~ 435 (726)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCc-cEEeecCCCCCCCCCCCCccccce
Q 040462 436 SLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGV-DILAAVSPLAPISTDPEDKRRVKY 514 (726)
Q Consensus 436 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~-~I~sa~~~~~~~~~~~~~~~~~~y 514 (726)
+.++.||++|+.. ||.|||+ .|+++++.... .....|
T Consensus 196 ---------------------------~~~~~~S~~g~~~--------~i~apG~~~i~~~~~~~~~-------~~~~~~ 233 (273)
T cd07485 196 ---------------------------DNKASFSNYGRWV--------DIAAPGVGTILSTVPKLDG-------DGGGNY 233 (273)
T ss_pred ---------------------------CCcCccccCCCce--------EEEeCCCCccccccccccC-------CCCCCe
Confidence 3457899999987 9999999 89888764311 112478
Q ss_pred eecccccchhHHHHHHHHHHHhhCCC-CCHHHHHHHHHhc
Q 040462 515 SIESGTSMACPHAAAVAAYVKSFHPD-WSPSAIRSAIMTT 553 (726)
Q Consensus 515 ~~~sGTSmAaP~VAG~aALl~~~~P~-~sp~~Ik~~L~~T 553 (726)
..++|||||||+|||++|||+|++|. |+|+|||++|++|
T Consensus 234 ~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 234 EYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred EeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 99999999999999999999999999 9999999999986
No 18
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=1.1e-42 Score=363.30 Aligned_cols=248 Identities=33% Similarity=0.439 Sum_probs=206.3
Q ss_pred CCccc--cccchhhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCC
Q 040462 114 RSWDF--MGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTA 191 (726)
Q Consensus 114 ~s~~~--~g~~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~ 191 (726)
.+|.+ ++++ .+|+.+ +|+||+|+|||+||+++||+|....+ ..+.++ .++...+
T Consensus 9 ~~w~~~~~~~~-~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~~~-----------~~~~~~-----------~~~~~~~ 64 (260)
T cd07484 9 YQWNLDQIGAP-KAWDIT-GGSGVTVAVVDTGVDPTHPDLLKVKF-----------VLGYDF-----------VDNDSDA 64 (260)
T ss_pred cCCCccccChH-HHHhhc-CCCCCEEEEEeCCCCCCCcccccCCc-----------ccceec-----------cCCCCCC
Confidence 45544 4555 899988 99999999999999999999843311 111111 1223456
Q ss_pred CCCCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCCeEEEeccCCC
Q 040462 192 RDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGVDIITVSLGGN 270 (726)
Q Consensus 192 ~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~~ 270 (726)
.|..+|||||||||++....+ ..+.|+||+|+|+.+|+++..+ +...+++++|+++++.|++|||+|||..
T Consensus 65 ~d~~~HGT~vagii~~~~~~~--------~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g~~ 136 (260)
T cd07484 65 MDDNGHGTHVAGIIAAATNNG--------TGVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGGG 136 (260)
T ss_pred CCCCCcHHHHHHHHhCccCCC--------CceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCCCC
Confidence 788999999999999874221 1238999999999999998765 7889999999999999999999999987
Q ss_pred CCCCccccHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCC
Q 040462 271 IPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMK 350 (726)
Q Consensus 271 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~ 350 (726)
. ....+..++..+.++|++||+||||+|.....+++..+++|+||+.+.+
T Consensus 137 ~----~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~-------------------------- 186 (260)
T cd07484 137 L----GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD-------------------------- 186 (260)
T ss_pred C----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC--------------------------
Confidence 3 3456777777889999999999999999888889999999999997544
Q ss_pred CceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEee
Q 040462 351 GKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVS 430 (726)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~ 430 (726)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCcc
Q 040462 431 MENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKR 510 (726)
Q Consensus 431 ~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 510 (726)
+..+.||++|+.. |+.|||.+|++..+..
T Consensus 187 --------------------------------~~~~~~s~~g~~~--------~~~apG~~i~~~~~~~----------- 215 (260)
T cd07484 187 --------------------------------DKRASFSNYGKWV--------DVSAPGGGILSTTPDG----------- 215 (260)
T ss_pred --------------------------------CCcCCcCCCCCCc--------eEEeCCCCcEeecCCC-----------
Confidence 3457889999876 9999999999887653
Q ss_pred ccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccC
Q 040462 511 RVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPM 557 (726)
Q Consensus 511 ~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i 557 (726)
.|..++|||||||+|||++||+++++| |++++||++|++||+++
T Consensus 216 --~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 216 --DYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred --CEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 799999999999999999999999999 99999999999999876
No 19
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-43 Score=367.62 Aligned_cols=326 Identities=24% Similarity=0.310 Sum_probs=255.6
Q ss_pred cCCCcEEEEEeCCCCCCCCcchhHHHHHHHHhhc------CCCCCC------------cEEEeec---ceeeEEEEEeCH
Q 040462 29 YDDRKVYIVYIGSLPKGEYVTSSHHQSILQEVVE------GSSVGD------------VLVRSYR---RSFNGFAAKLTD 87 (726)
Q Consensus 29 ~~~~~~yiV~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~------------~v~~~y~---~~~~g~s~~l~~ 87 (726)
+..+..|||.+++... .+..+.|.+++....+. .++.-. .+.+.|. .+|+|+.-..+.
T Consensus 77 ~~~~~~YiV~f~~~~~-q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft~ 155 (501)
T KOG1153|consen 77 EALPSRYIVVFKPDAS-QQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFTG 155 (501)
T ss_pred cccccceEEEeCCCcc-HHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhcccccccc
Confidence 4567899999995544 34455555555443221 111101 1344443 378888899999
Q ss_pred HHHHHHHcCCCeEEEEeCceecc--------ccCCCccccccch------hhcc----CCCCCCCcEEEEEcccCCCCCC
Q 040462 88 LERQKLASMEEVVSVFPSRTLQF--------HTTRSWDFMGLNQ------SITR----KHSVESNIIIGVIDSGIWPESE 149 (726)
Q Consensus 88 ~~~~~L~~~p~V~~v~~~~~~~~--------~~~~s~~~~g~~~------~~w~----~~~~G~gV~VgVIDtGid~~Hp 149 (726)
+-+..++++|-++.++++...+. +...+|.+..+.. ..|- +...|+||...|+||||+.+||
T Consensus 156 ~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H~ 235 (501)
T KOG1153|consen 156 ESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEHP 235 (501)
T ss_pred ceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEeccccccccc
Confidence 99999999999999998877654 4445676655543 1121 2348999999999999999999
Q ss_pred CCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhccccCcCCCCccccccCcceeecccC
Q 040462 150 SFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPS 229 (726)
Q Consensus 150 ~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~ 229 (726)
+|.++ +.| |..+.. .....|++||||||||+|++.. -|||.+
T Consensus 236 dFegR------a~w------Ga~i~~------------~~~~~D~nGHGTH~AG~I~sKt--------------~GvAK~ 277 (501)
T KOG1153|consen 236 DFEGR------AIW------GATIPP------------KDGDEDCNGHGTHVAGLIGSKT--------------FGVAKN 277 (501)
T ss_pred ccccc------eec------ccccCC------------CCcccccCCCcceeeeeeeccc--------------cccccc
Confidence 99976 222 222211 2345689999999999999985 789999
Q ss_pred ceEEEEEeeCCCC-CCHHHHHHHHHHHHhC---------CCeEEEeccCCCCCCCccccHHHHHHHHHHhCCcEEEEecC
Q 040462 230 ARIAAYKVCNPSG-CASTDILAAFDDAIAD---------GVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAG 299 (726)
Q Consensus 230 A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~---------gvdVIn~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAG 299 (726)
++|+++||++++| +..+++++++|++++. +..|.|||+|+. ..-+++.|++.|.+.||++++|||
T Consensus 278 s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~-----~S~aLn~AV~~A~~~Gi~fa~AAG 352 (501)
T KOG1153|consen 278 SNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGF-----RSAALNMAVNAASERGIHFAVAAG 352 (501)
T ss_pred cceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCc-----ccHHHHHHHHHHhhcCeEEEEcCC
Confidence 9999999999998 9999999999999986 578999999997 345788888899999999999999
Q ss_pred CCCCCCCcc-ccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCC
Q 040462 300 NSGSNLGFV-YSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGC 378 (726)
Q Consensus 300 N~g~~~~~~-~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~ 378 (726)
|+..+.+.. |+.+..+|||||++..
T Consensus 353 Ne~eDAC~~SPass~~aITVGAst~~------------------------------------------------------ 378 (501)
T KOG1153|consen 353 NEHEDACNSSPASSKKAITVGASTKN------------------------------------------------------ 378 (501)
T ss_pred CcchhhhccCcccccccEEecccccc------------------------------------------------------
Confidence 999887654 5688999999998655
Q ss_pred CCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeec
Q 040462 379 INSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIK 458 (726)
Q Consensus 379 ~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~ 458 (726)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecccccchhHHHHHHHHHHHhhC
Q 040462 459 DFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFH 538 (726)
Q Consensus 459 ~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~ 538 (726)
+.++.||+||++. ||-|||++|+|.|.+.. ..-.++||||||+|||||++|..++++
T Consensus 379 ----D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~-----------~at~ilSGTSMasPhvaG~aAy~ls~~ 435 (501)
T KOG1153|consen 379 ----DTIAFFSNWGKCV--------DIFAPGVNILSSWIGSN-----------NATAILSGTSMASPHVAGLAAYFLSLG 435 (501)
T ss_pred ----cchhhhcCcccee--------eeecCchhhhhhhhcCc-----------cchheeecccccCcchhhhHHHhhhcC
Confidence 5789999999999 99999999999998762 356789999999999999999999999
Q ss_pred CC---------CCHHHHHHHHHhccc
Q 040462 539 PD---------WSPSAIRSAIMTTAW 555 (726)
Q Consensus 539 P~---------~sp~~Ik~~L~~TA~ 555 (726)
|. .||.++|..+..-..
T Consensus 436 ~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 436 PLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred CCChHHhhhccCChHHhhhhhhcccc
Confidence 83 388899888876543
No 20
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=1.3e-42 Score=361.80 Aligned_cols=232 Identities=32% Similarity=0.447 Sum_probs=196.7
Q ss_pred hccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhc
Q 040462 125 ITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTAST 204 (726)
Q Consensus 125 ~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgi 204 (726)
.|..+++|+||+|+|||+||+++||+|.++ ...+. .+.......|..+||||||||
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~------------~~~~~------------~~~~~~~~~d~~~HGT~vAgi 72 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR------------AIWGA------------DFVGGDPDSDCNGHGTHVAGT 72 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC------------eeeee------------ecCCCCCCCCCCccHHHHHHH
Confidence 677789999999999999999999999764 11111 221223367889999999999
Q ss_pred cccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhC-----CCeEEEeccCCCCCCCcccc
Q 040462 205 AAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIAD-----GVDIITVSLGGNIPVDFIKD 278 (726)
Q Consensus 205 aag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~-----gvdVIn~S~G~~~~~~~~~~ 278 (726)
|+++. .||||+|+|+.+|+++..+ ...+++++++++++++ +++|||+|||... ..
T Consensus 73 ia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~-----~~ 133 (255)
T cd04077 73 VGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGA-----ST 133 (255)
T ss_pred HHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCC-----CH
Confidence 99863 7899999999999998875 7788999999999987 4899999999872 45
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCCCCC-CccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEE
Q 040462 279 AIAIGAFHAMEKGILTLNSAGNSGSNL-GFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLV 357 (726)
Q Consensus 279 ~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~ 357 (726)
.+..++.++.++|+++|+||||+|.+. ...+...|++|+||+.+.+
T Consensus 134 ~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~--------------------------------- 180 (255)
T cd04077 134 ALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD--------------------------------- 180 (255)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC---------------------------------
Confidence 677777889999999999999999876 4556788999999997644
Q ss_pred ecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHH
Q 040462 358 HGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSL 437 (726)
Q Consensus 358 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l 437 (726)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeec
Q 040462 438 ISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIE 517 (726)
Q Consensus 438 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~ 517 (726)
+..+.||++||.. ||+|||.+|.++.... ...|..+
T Consensus 181 -------------------------~~~~~~S~~g~~~--------~i~apG~~i~~~~~~~-----------~~~~~~~ 216 (255)
T cd04077 181 -------------------------DARASFSNYGSCV--------DIFAPGVDILSAWIGS-----------DTATATL 216 (255)
T ss_pred -------------------------CCccCcccCCCCC--------cEEeCCCCeEecccCC-----------CCcEEee
Confidence 3457899999987 9999999999887642 2478999
Q ss_pred ccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 040462 518 SGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWP 556 (726)
Q Consensus 518 sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~ 556 (726)
+|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 217 ~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 217 SGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred CcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999974
No 21
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.5e-42 Score=367.25 Aligned_cols=257 Identities=24% Similarity=0.336 Sum_probs=189.4
Q ss_pred cccccchhhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCC
Q 040462 117 DFMGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDG 196 (726)
Q Consensus 117 ~~~g~~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~g 196 (726)
+.+++. .+|+.+.+|+||+||||||||+..|| |...++. +...... .......|..|
T Consensus 6 ~~l~~~-~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~~~~~~~--------------~~~~~~~D~~g 62 (298)
T cd07494 6 ALLNAT-RVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------VRVVLAP--------------GATDPACDENG 62 (298)
T ss_pred hhcChh-HHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------ceeecCC--------------CCCCCCCCCCC
Confidence 356666 89999999999999999999999998 7654221 1100000 01234568889
Q ss_pred CcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCCCCHHHHHHHHHHHHhCCCeEEEeccCCCCCCC--
Q 040462 197 HGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIADGVDIITVSLGGNIPVD-- 274 (726)
Q Consensus 197 HGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~-- 274 (726)
||||||+++ .||||+|+|+.+|+++. ..+++++||+||++++++|||||||......
T Consensus 63 HGT~vag~i------------------~GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~~~g~dVIn~SlG~~~~~~~~ 121 (298)
T cd07494 63 HGTGESANL------------------FAIAPGAQFIGVKLGGP---DLVNSVGAFKKAISLSPDIISNSWGYDLRSPGT 121 (298)
T ss_pred cchheeece------------------eEeCCCCeEEEEEccCC---CcHHHHHHHHHHHhcCCCEEEeecccCCCCccc
Confidence 999998754 57899999999999864 5678999999999999999999999863211
Q ss_pred -------ccccHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccC
Q 040462 275 -------FIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSF 347 (726)
Q Consensus 275 -------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~ 347 (726)
.....++.++.+|.++|++||+||||++. .+++..|++|+|||++.+.. +..
T Consensus 122 ~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~---------g~~--------- 180 (298)
T cd07494 122 SWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED---------GAR--------- 180 (298)
T ss_pred ccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC---------Ccc---------
Confidence 12345778888999999999999999974 56889999999999865420 000
Q ss_pred CCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEE
Q 040462 348 AMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAV 427 (726)
Q Consensus 348 ~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~ 427 (726)
T Consensus 181 -------------------------------------------------------------------------------- 180 (298)
T cd07494 181 -------------------------------------------------------------------------------- 180 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCce----------------EeCCcc
Q 040462 428 AVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDI----------------SAPGVD 491 (726)
Q Consensus 428 ~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI----------------~APG~~ 491 (726)
......+.|+++ ..+++.|||+ +|||..
T Consensus 181 --------------------------------~~~~~~~~~~s~----~~~g~~~pd~~~~~g~~~~~~~~~~~~APG~~ 224 (298)
T cd07494 181 --------------------------------RASSYASGFRSK----IYPGRQVPDVCGLVGMLPHAAYLMLPVPPGSQ 224 (298)
T ss_pred --------------------------------cccccccCcccc----cCCCCccCccccccCcCCcccccccccCCCcc
Confidence 000000112111 1256667776 479999
Q ss_pred EEeecCCCCCCCCCCCCccccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCC
Q 040462 492 ILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNS 559 (726)
Q Consensus 492 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~ 559 (726)
|.++..... . .......|..++|||||||||||++|||+|++|.|++++||.+|++||+++..
T Consensus 225 i~~~~~~~~-~----~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~~ 287 (298)
T cd07494 225 LDRSCAAFP-D----GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVTK 287 (298)
T ss_pred eeccccCCC-C----CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC
Confidence 876553210 0 01122479999999999999999999999999999999999999999998866
No 22
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.9e-43 Score=371.80 Aligned_cols=263 Identities=26% Similarity=0.278 Sum_probs=188.7
Q ss_pred EEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhccccCcCCCCcc
Q 040462 136 IIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDASF 215 (726)
Q Consensus 136 ~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag~~~~~~~~ 215 (726)
+|||||||||.+||+|.+.- .....+ +. ....+.|..||||||||||++....
T Consensus 2 ~VaviDtGi~~~hp~l~~~~------------~~~~~~-~~----------~~~~~~d~~gHGT~vAgiia~~~~~---- 54 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPAL------------AEDDLD-SD----------EPGWTADDLGHGTAVAGLALYGDLT---- 54 (291)
T ss_pred EEEEecCCCCCCChhhhhhh------------cccccc-cc----------CCCCcCCCCCChHHHHHHHHcCccc----
Confidence 79999999999999997641 000000 00 0112678999999999999976422
Q ss_pred ccccCcceeecccCceEEEEEeeCCCC-----CCHHHHHHHHHHHHhCC---CeEEEeccCCCCCCCcc-ccHHHHHHHH
Q 040462 216 YGVGQGTARGGVPSARIAAYKVCNPSG-----CASTDILAAFDDAIADG---VDIITVSLGGNIPVDFI-KDAIAIGAFH 286 (726)
Q Consensus 216 ~G~~~G~~~GvAP~A~l~~~kv~~~~g-----~~~~~i~~ai~~A~~~g---vdVIn~S~G~~~~~~~~-~~~~~~a~~~ 286 (726)
.....|+||+++|+.+|++...| .+..++++||+|+++.+ ++|||||||........ ...+..++++
T Consensus 55 ----~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~~~~~~~~~~~~id~ 130 (291)
T cd04847 55 ----LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPIDDGRPSSWAAALDQ 130 (291)
T ss_pred ----CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCccCCCCCcHHHHHHH
Confidence 11238999999999999998863 56788999999999853 59999999987322111 1244545543
Q ss_pred -HHhCCcEEEEecCCCCCCCCc------------cccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCce
Q 040462 287 -AMEKGILTLNSAGNSGSNLGF------------VYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKK 353 (726)
Q Consensus 287 -a~~~Gi~vV~AAGN~g~~~~~------------~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~ 353 (726)
+.++|++||+||||+|..... .+..++++|+|||++.+.........+
T Consensus 131 ~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s~~~------------------- 191 (291)
T cd04847 131 LAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRARYS------------------- 191 (291)
T ss_pred HhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCccccc-------------------
Confidence 568999999999999987643 245678999999987663211000000
Q ss_pred eeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhh
Q 040462 354 FPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMEN 433 (726)
Q Consensus 354 ~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~ 433 (726)
T Consensus 192 -------------------------------------------------------------------------------- 191 (291)
T cd04847 192 -------------------------------------------------------------------------------- 191 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCC-----CCCCC
Q 040462 434 FNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPIS-----TDPED 508 (726)
Q Consensus 434 ~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~-----~~~~~ 508 (726)
.......+.||+|||.. ++.+||||+|||++|.++........ .....
T Consensus 192 -------------------------~~~~~~~~~fs~~Gp~~--~~~~KPDl~apG~~i~~~~~~~~~~~~~~~~~~~~~ 244 (291)
T cd04847 192 -------------------------AVGPAPAGATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSS 244 (291)
T ss_pred -------------------------ccccccCCCccccCCCC--CCCcCCcEEeeCCceeecCCCCCccCcceeeecccC
Confidence 00001233499999998 99999999999999987654221000 00011
Q ss_pred ccccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 040462 509 KRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAW 555 (726)
Q Consensus 509 ~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 555 (726)
.....|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 245 ~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 245 PSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 22357999999999999999999999999999999999999999985
No 23
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=8.8e-42 Score=362.81 Aligned_cols=277 Identities=28% Similarity=0.358 Sum_probs=204.1
Q ss_pred CCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhcccc
Q 040462 128 KHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAG 207 (726)
Q Consensus 128 ~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag 207 (726)
++++|+||+|||||+|||++||+|.+... .+.+ ..++++.....+.+ ...|..+|||||||||+|
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~-~~~~~~~~~~~~~~--~~~d~~~HGT~vAgiia~ 66 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTN-LFHRKIVRYDSLSD--TKDDVDGHGTHVAGIIAG 66 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCc-cCcccEEEeeccCC--CCCCCCCCcchhheeecc
Confidence 57899999999999999999999976421 1112 23445554444422 223889999999999999
Q ss_pred CcCCCCccccccCcceeecccCceEEEEEeeCCCC--CCHHHHHHHHHHHHhCCCeEEEeccCCCCCCCccccHHHHHHH
Q 040462 208 NEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG--CASTDILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAF 285 (726)
Q Consensus 208 ~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~a~~ 285 (726)
+....... ..+.||||+|+|+.+|+++..+ ....++..+++++.+.+++|||+|||..... .......++.
T Consensus 67 ~~~~~~~~-----~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~~--~~~~~~~~~~ 139 (293)
T cd04842 67 KGNDSSSI-----SLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNN--GYTLLARAYD 139 (293)
T ss_pred CCcCCCcc-----cccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCCCcc--ccchHHHHHH
Confidence 85432211 1249999999999999998765 5677789999999999999999999987321 1223333333
Q ss_pred HHH-h-CCcEEEEecCCCCCCCC---ccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecC
Q 040462 286 HAM-E-KGILTLNSAGNSGSNLG---FVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGK 360 (726)
Q Consensus 286 ~a~-~-~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~ 360 (726)
.+. + +|+++|+||||+|.... ..+...+++|+|||++.......
T Consensus 140 ~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~------------------------------- 188 (293)
T cd04842 140 QFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG------------------------------- 188 (293)
T ss_pred HHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc-------------------------------
Confidence 333 3 89999999999998765 56778999999999876531100
Q ss_pred CCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHH
Q 040462 361 EVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISY 440 (726)
Q Consensus 361 ~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~ 440 (726)
..|..
T Consensus 189 -----------~~~~~---------------------------------------------------------------- 193 (293)
T cd04842 189 -----------EGGLG---------------------------------------------------------------- 193 (293)
T ss_pred -----------ccccc----------------------------------------------------------------
Confidence 00000
Q ss_pred HhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecccc
Q 040462 441 KNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGT 520 (726)
Q Consensus 441 ~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGT 520 (726)
.......++.||++||+. .+++||||+|||++|+++..... .........|..++||
T Consensus 194 -----------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~----~~~~~~~~~~~~~~GT 250 (293)
T cd04842 194 -----------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGG----GIGDTSDSAYTSKSGT 250 (293)
T ss_pred -----------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCCC----CCCCCChhheeecCcH
Confidence 001125689999999987 88999999999999999875420 0011223578999999
Q ss_pred cchhHHHHHHHHHHHhhC-----C---CCCHHHHHHHHHhccc
Q 040462 521 SMACPHAAAVAAYVKSFH-----P---DWSPSAIRSAIMTTAW 555 (726)
Q Consensus 521 SmAaP~VAG~aALl~~~~-----P---~~sp~~Ik~~L~~TA~ 555 (726)
|||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 251 S~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 251 SMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 999999999999999985 4 6777899999999985
No 24
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.9e-42 Score=356.56 Aligned_cols=253 Identities=30% Similarity=0.389 Sum_probs=189.7
Q ss_pred CcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhccccCcCCCC
Q 040462 134 NIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDA 213 (726)
Q Consensus 134 gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag~~~~~~ 213 (726)
||+|||||+|||++||+|.+.-. ...+|..++ ........|..+|||||||||+++..
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~~------------~~~~~~~~~-------~~~~~~~~d~~~HGT~vAgiia~~~~--- 58 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRVA------------QWADFDENR-------RISATEVFDAGGHGTHVSGTIGGGGA--- 58 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcccC------------CceeccCCC-------CCCCCCCCCCCCcHHHHHHHHhcCCC---
Confidence 79999999999999999986411 111111100 01134556788999999999999853
Q ss_pred ccccccCcceeecccCceEEEEEeeCCCCCCHHHHHHHHHHHHhCCCeEEEeccCCCCCCCccccHHHHHHHHHHh-CCc
Q 040462 214 SFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAME-KGI 292 (726)
Q Consensus 214 ~~~G~~~G~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~a~~~a~~-~Gi 292 (726)
.+...||||+|+|+.+|++...++..++++++|+|+++.+++|||||||..... .+.+..++....+ +|+
T Consensus 59 ------~~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~---~~~~~~~~~~~~~~~g~ 129 (254)
T cd07490 59 ------KGVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS---EDPLEEAVEALSNQTGA 129 (254)
T ss_pred ------CCCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC---CcHHHHHHHHHHHcCCC
Confidence 223489999999999999988778899999999999999999999999987321 4556655555554 699
Q ss_pred EEEEecCCCCCCCCccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCCCCCCcCCCC
Q 040462 293 LTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQ 372 (726)
Q Consensus 293 ~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 372 (726)
+||+||||+|......+...+++|+|||++.+.........+
T Consensus 130 lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~g-------------------------------------- 171 (254)
T cd07490 130 LFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSSFG-------------------------------------- 171 (254)
T ss_pred EEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccCCc--------------------------------------
Confidence 999999999988777888999999999986552110000000
Q ss_pred CCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEe
Q 040462 373 ACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEIL 452 (726)
Q Consensus 373 ~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~ 452 (726)
T Consensus 172 -------------------------------------------------------------------------------- 171 (254)
T cd07490 172 -------------------------------------------------------------------------------- 171 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecccccchhHHHHHHHH
Q 040462 453 KTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAA 532 (726)
Q Consensus 453 ~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aA 532 (726)
......++++|.. .....||||.|||.+|+++.... .....|..++|||||||+|||++|
T Consensus 172 ----------~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~~---------~~~~~~~~~~GTS~AaP~vaG~aA 231 (254)
T cd07490 172 ----------SSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQGA---------NGDGQYTRLSGTSMAAPHVAGVAA 231 (254)
T ss_pred ----------ccccccccCCCCC-ccCCcCceEEeccCCeEccccCC---------CCCCCeeecccHHHHHHHHHHHHH
Confidence 0112223334433 25568999999999999875321 112479999999999999999999
Q ss_pred HHHhhCCCCCHHHHHHHHHhccc
Q 040462 533 YVKSFHPDWSPSAIRSAIMTTAW 555 (726)
Q Consensus 533 Ll~~~~P~~sp~~Ik~~L~~TA~ 555 (726)
||+|++|+|++.+||++|++||+
T Consensus 232 l~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 232 LLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred HHHHHCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999985
No 25
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.7e-42 Score=361.17 Aligned_cols=250 Identities=27% Similarity=0.334 Sum_probs=191.8
Q ss_pred CcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCc----------------------eeeeeeecCCCCCC
Q 040462 134 NIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNN----------------------KLIGARYYTTDGTA 191 (726)
Q Consensus 134 gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~----------------------klig~~~~~~~~~~ 191 (726)
||+|+|||||||++||+|.+.- ..+++|..+. +.. ..........
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~------------~~g~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~ 67 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVL------------LPGYDFISDPAIANDGDGRDSDPTDPGDWVTGDDV-PPGGFCGSGV 67 (285)
T ss_pred CCEEEEecCCCCCCCcchhhcc------------ccCcccccCcccccCCCCCCCCCCCcccccccccc-cccccccCCC
Confidence 7999999999999999998752 1222221110 000 0000012334
Q ss_pred CCCCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCCCCHHHHHHHHHHHH----------hCCCe
Q 040462 192 RDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAI----------ADGVD 261 (726)
Q Consensus 192 ~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~----------~~gvd 261 (726)
.|..+|||||||||+|...+ ..| +.||||+|+|+.+|+++..+...+++++|++|++ .++++
T Consensus 68 ~~~~~HGT~vAgiiaa~~~~---~~~-----~~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~ 139 (285)
T cd07496 68 SPSSWHGTHVAGTIAAVTNN---GVG-----VAGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNPAK 139 (285)
T ss_pred CCCCCCHHHHHHHHhCcCCC---CCC-----ceeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCCCe
Confidence 56789999999999998532 112 2899999999999999887778899999999998 46789
Q ss_pred EEEeccCCCCCCCccccHHHHHHHHHHhCCcEEEEecCCCCCCC-CccccCCCceEEEeeeccCcceeeEEEeCCCceEe
Q 040462 262 IITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNL-GFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLS 340 (726)
Q Consensus 262 VIn~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~ 340 (726)
|||||||.... ....+..++..+.++|++||+||||++.+. ..++...+++|+||+++.+
T Consensus 140 Iin~S~G~~~~---~~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~---------------- 200 (285)
T cd07496 140 VINLSLGGDGA---CSATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR---------------- 200 (285)
T ss_pred EEEeCCCCCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC----------------
Confidence 99999998722 145677778899999999999999999876 5677888999999987544
Q ss_pred eeeeccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCcee
Q 040462 341 GYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSF 420 (726)
Q Consensus 341 g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~ 420 (726)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCC
Q 040462 421 VVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLA 500 (726)
Q Consensus 421 ~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~ 500 (726)
+.++.||++||.. ||.|||++|.+......
T Consensus 201 ------------------------------------------~~~~~~S~~g~~v--------di~apG~~i~~~~~~~~ 230 (285)
T cd07496 201 ------------------------------------------GQRASYSNYGPAV--------DVSAPGGDCASDVNGDG 230 (285)
T ss_pred ------------------------------------------CCcccccCCCCCC--------CEEeCCCCccccCCCCc
Confidence 4567899999987 99999999998865432
Q ss_pred CCC--CCCCCccccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 040462 501 PIS--TDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTT 553 (726)
Q Consensus 501 ~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~T 553 (726)
... ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 231 YPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred cccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 110 00111223578999999999999999999999999999999999999976
No 26
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.6e-42 Score=353.59 Aligned_cols=240 Identities=30% Similarity=0.421 Sum_probs=193.7
Q ss_pred cEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhccccCcCCCCc
Q 040462 135 IIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDAS 214 (726)
Q Consensus 135 V~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag~~~~~~~ 214 (726)
|+|||||+||+++||+|.+.. . ...+.++. .+...+.|..+|||||||||+|+..++
T Consensus 1 V~VaviDsGi~~~hp~l~~~~--~--------~~~~~~~~-----------~~~~~~~~~~~HGT~vAgiiag~~~~~-- 57 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP--K--------LVPGWNFV-----------SNNDPTSDIDGHGTACAGVAAAVGNNG-- 57 (242)
T ss_pred CEEEEecCCCCCCChhhccCc--C--------ccCCcccc-----------CCCCCCCCCCCCHHHHHHHHHhccCCC--
Confidence 789999999999999998730 0 11111211 112345788999999999999975321
Q ss_pred cccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCCeEEEeccCCCCCCCccccHHHHHHHHHHh-CCc
Q 040462 215 FYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAME-KGI 292 (726)
Q Consensus 215 ~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~a~~~a~~-~Gi 292 (726)
..+.||||+|+|+.+|+++..+ +...++.++++++++.+++|||||||...........+..++..+.+ +|+
T Consensus 58 ------~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~~~gv 131 (242)
T cd07498 58 ------LGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNAATYGRNGKGG 131 (242)
T ss_pred ------ceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchHHHHHHHHHHHHhhcCCe
Confidence 1238999999999999998765 78889999999999999999999999874444556778888888888 999
Q ss_pred EEEEecCCCCCCCCccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCCCCCCcCCCC
Q 040462 293 LTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQ 372 (726)
Q Consensus 293 ~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 372 (726)
++|+||||+|......+...+++|+||+++.+
T Consensus 132 liv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------------------------------------------------ 163 (242)
T cd07498 132 VVLFAAGNSGRSVSSGYAANPSVIAVAATDSN------------------------------------------------ 163 (242)
T ss_pred EEEEecCCCCCccCCCCcCCCCeEEEEEeCCC------------------------------------------------
Confidence 99999999998877778899999999997644
Q ss_pred CCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEe
Q 040462 373 ACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEIL 452 (726)
Q Consensus 373 ~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~ 452 (726)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecccccchhHHHHHHHH
Q 040462 453 KTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAA 532 (726)
Q Consensus 453 ~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aA 532 (726)
+.++.||++||.. |+.|||.++.......... .+.....|..++|||||||+|||++|
T Consensus 164 ----------~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~----~~~~~~~~~~~~GTS~Aap~vaG~~A 221 (242)
T cd07498 164 ----------DARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSA----GDYPGGGYGSFSGTSFASPVAAGVAA 221 (242)
T ss_pred ----------CCccCcCCCCCCe--------EEEeCcCCcccCCcccccc----ccCCCCceEeeCcHHHHHHHHHHHHH
Confidence 3457899999987 9999999998875442111 11223578999999999999999999
Q ss_pred HHHhhCCCCCHHHHHHHHHhc
Q 040462 533 YVKSFHPDWSPSAIRSAIMTT 553 (726)
Q Consensus 533 Ll~~~~P~~sp~~Ik~~L~~T 553 (726)
||+|++|+|++++||++|++|
T Consensus 222 ll~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 222 LILSANPNLTPAEVEDILTST 242 (242)
T ss_pred HHHHhCCCCCHHHHHHHHHhC
Confidence 999999999999999999976
No 27
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.9e-41 Score=359.03 Aligned_cols=263 Identities=28% Similarity=0.315 Sum_probs=187.4
Q ss_pred cCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhccc
Q 040462 127 RKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAA 206 (726)
Q Consensus 127 ~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaa 206 (726)
+.+++|+||+|||||+|||++||+|.+..+ .. +.|.+...+.|..||||||||||+
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~~------------~~------------~~~~~~~~~~d~~gHGT~VAgiia 57 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRDI------------TT------------KSFVGGEDVQDGHGHGTHCAGTIF 57 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCcc------------cC------------cccCCCCCCCCCCCcHHHHHHHHh
Confidence 357899999999999999999999986521 11 122222345788999999999999
Q ss_pred cCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCCeEEEeccCCCCC---------CCcc
Q 040462 207 GNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGVDIITVSLGGNIP---------VDFI 276 (726)
Q Consensus 207 g~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~---------~~~~ 276 (726)
|+... +...||||+|+|+.+|++...+ +...++++||+||++.|++|||+|||.... ....
T Consensus 58 g~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~ 128 (297)
T cd07480 58 GRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQGWPPGLAF 128 (297)
T ss_pred cccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCcccccccCCCCchh
Confidence 97532 2337999999999999997655 777789999999999999999999998631 1111
Q ss_pred ccHHHHHHHHH---------------HhCCcEEEEecCCCCCCCCccc-----cCCCceEEEeeeccCcceeeEEEeCCC
Q 040462 277 KDAIAIGAFHA---------------MEKGILTLNSAGNSGSNLGFVY-----SVAPWLMSVAASTTDRLFVDKVLLGNG 336 (726)
Q Consensus 277 ~~~~~~a~~~a---------------~~~Gi~vV~AAGN~g~~~~~~~-----~~~p~vitVgA~~~~~~~~~~~~~g~g 336 (726)
...++.....+ .++|++||+||||++....... ...+++++|++....
T Consensus 129 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~V~~~------------ 196 (297)
T cd07480 129 SRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAAVGAL------------ 196 (297)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEEECCC------------
Confidence 22333333333 6899999999999986543221 122344455443322
Q ss_pred ceEeeeeeccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCC
Q 040462 337 ATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYE 416 (726)
Q Consensus 337 ~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~ 416 (726)
T Consensus 197 -------------------------------------------------------------------------------- 196 (297)
T cd07480 197 -------------------------------------------------------------------------------- 196 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeec
Q 040462 417 KVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAV 496 (726)
Q Consensus 417 ~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~ 496 (726)
.....|+++.+ ....||||+|||++|++++
T Consensus 197 ----------------------------------------------~~~~~~~~~~~----~~~~~~dv~ApG~~i~s~~ 226 (297)
T cd07480 197 ----------------------------------------------GRTGNFSAVAN----FSNGEVDIAAPGVDIVSAA 226 (297)
T ss_pred ----------------------------------------------CCCCCccccCC----CCCCceEEEeCCCCeEeec
Confidence 11112222222 1234789999999999987
Q ss_pred CCCCCCCCCCCCccccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCC--CCCCCCCcCCCCcc
Q 040462 497 SPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSS--KVNDAEVAFGSGHV 574 (726)
Q Consensus 497 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~~--~~~~~~~~~G~G~v 574 (726)
+.. .|..++|||||||+|||++|||+|++|++++.+++.+|+......... .....+..+|+|++
T Consensus 227 ~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~g~G~~ 293 (297)
T cd07480 227 PGG-------------GYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAARTTQFAPGLDLPDRGVGLG 293 (297)
T ss_pred CCC-------------cEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhcccCCCCCCCChhhcCCcee
Confidence 654 799999999999999999999999999999999888888443221111 11235678999998
Q ss_pred Ccc
Q 040462 575 NPV 577 (726)
Q Consensus 575 n~~ 577 (726)
++.
T Consensus 294 ~~~ 296 (297)
T cd07480 294 LAP 296 (297)
T ss_pred ecC
Confidence 875
No 28
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3e-41 Score=353.44 Aligned_cols=247 Identities=19% Similarity=0.147 Sum_probs=181.9
Q ss_pred ccchhhccCCC-CCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCc
Q 040462 120 GLNQSITRKHS-VESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHG 198 (726)
Q Consensus 120 g~~~~~w~~~~-~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHG 198 (726)
+++ .+|+... .|+||+|+|||+|||.+||+|.++..... + ...+.|+.+||
T Consensus 3 ~~~-~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~~~------------~---------------~~~~~d~~gHG 54 (277)
T cd04843 3 NAR-YAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGITLI------------S---------------GLTDQADSDHG 54 (277)
T ss_pred ChH-HHHHhcCCCCCcEEEEEecCCCCCCChhhcccccccc------------C---------------CCCCCCCCCCc
Confidence 445 7898744 58999999999999999999987521100 0 11256889999
Q ss_pred chhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCCCCHHHHHHHHHHHHh----CCCeEEEeccCCCCCCC
Q 040462 199 THTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIA----DGVDIITVSLGGNIPVD 274 (726)
Q Consensus 199 ThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~----~gvdVIn~S~G~~~~~~ 274 (726)
|||||||++.. +- .| +.||||+|+|+.+|+++ .++++++|.+|++ .++.+||||||......
T Consensus 55 T~VAGiIaa~~----n~----~G-~~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~~~~~~v~~in~s~g~~~~~~ 120 (277)
T cd04843 55 TAVLGIIVAKD----NG----IG-VTGIAHGAQAAVVSSTR-----VSNTADAILDAADYLSPGDVILLEMQTGGPNNGY 120 (277)
T ss_pred chhheeeeeec----CC----Cc-eeeeccCCEEEEEEecC-----CCCHHHHHHHHHhccCCCCEEEEEccccCCCcCc
Confidence 99999999863 11 22 28999999999999985 3456677777776 45778999999862211
Q ss_pred -----ccccHHHHHHHHHHhCCcEEEEecCCCCCCCCcc------------c-cCCCceEEEeeeccCcceeeEEEeCCC
Q 040462 275 -----FIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFV------------Y-SVAPWLMSVAASTTDRLFVDKVLLGNG 336 (726)
Q Consensus 275 -----~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~------------~-~~~p~vitVgA~~~~~~~~~~~~~g~g 336 (726)
.....+..++.+|.++|+++|+||||++...... + ...|++|+|||++.+.
T Consensus 121 ~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~~----------- 189 (277)
T cd04843 121 PPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSSTT----------- 189 (277)
T ss_pred ccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCCC-----------
Confidence 2234556677788899999999999998753211 1 1235788888875431
Q ss_pred ceEeeeeeccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCC
Q 040462 337 ATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYE 416 (726)
Q Consensus 337 ~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~ 416 (726)
T Consensus 190 -------------------------------------------------------------------------------- 189 (277)
T cd04843 190 -------------------------------------------------------------------------------- 189 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeec
Q 040462 417 KVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAV 496 (726)
Q Consensus 417 ~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~ 496 (726)
...++.||++||.. ||.|||++|+++.
T Consensus 190 ---------------------------------------------~~~~~~fSn~G~~v--------di~APG~~i~s~~ 216 (277)
T cd04843 190 ---------------------------------------------GHTRLAFSNYGSRV--------DVYGWGENVTTTG 216 (277)
T ss_pred ---------------------------------------------CCccccccCCCCcc--------ceEcCCCCeEecC
Confidence 01268899999987 9999999999998
Q ss_pred CCCCCCCCCCCCccccceeecccccchhHHHHHHHHHHHh----h-CCCCCHHHHHHHHHhccc
Q 040462 497 SPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKS----F-HPDWSPSAIRSAIMTTAW 555 (726)
Q Consensus 497 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~-~P~~sp~~Ik~~L~~TA~ 555 (726)
...... ..+.....|..++|||||||||||++|||++ + +|+|+|+|||++|+.|++
T Consensus 217 ~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 217 YGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred CCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 754211 0011112457899999999999999999975 3 499999999999999974
No 29
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.4e-41 Score=348.89 Aligned_cols=249 Identities=30% Similarity=0.425 Sum_probs=193.8
Q ss_pred CCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCcee---eeeeecCCCCCCCCCCCCcchhhhccccCc
Q 040462 133 SNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKL---IGARYYTTDGTARDKDGHGTHTASTAAGNE 209 (726)
Q Consensus 133 ~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~kl---ig~~~~~~~~~~~D~~gHGThVAgiaag~~ 209 (726)
+||+|||||||||++||+|.++...... ..+..+.+..++..+ .+..+.....++.|..+|||||||||+|..
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~HGT~va~ii~~~~ 77 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPG----EIPGNGIDDDGNGYVDDIYGWNFVNNDNDPMDDNGHGTHVAGIIGAVG 77 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccCcc----cccccCcccCCCCcccCCCcccccCCCCCCCCCCCcHHHHHHHHHCcC
Confidence 6999999999999999999975211000 111122111111111 112222234567889999999999999975
Q ss_pred CCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCCeEEEeccCCCCCCCccccHHHHHHHHHH
Q 040462 210 VKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAM 288 (726)
Q Consensus 210 ~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~a~~~a~ 288 (726)
..+. .+.||||+|+|+.+|++...+ ++..+++++++++++.+++|||+|||.... ...+..++.++.
T Consensus 78 ~~~~--------~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~----~~~~~~~~~~~~ 145 (259)
T cd07473 78 NNGI--------GIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP----SQALRDAIARAI 145 (259)
T ss_pred CCCC--------ceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC----CHHHHHHHHHHH
Confidence 3221 248999999999999998876 889999999999999999999999998722 566777778999
Q ss_pred hCCcEEEEecCCCCCCC---Ccccc--CCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCC
Q 040462 289 EKGILTLNSAGNSGSNL---GFVYS--VAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVS 363 (726)
Q Consensus 289 ~~Gi~vV~AAGN~g~~~---~~~~~--~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~ 363 (726)
++|++||+||||+|... ..++. ..+++|+||+.+.+
T Consensus 146 ~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~--------------------------------------- 186 (259)
T cd07473 146 DAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN--------------------------------------- 186 (259)
T ss_pred hCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC---------------------------------------
Confidence 99999999999998762 23343 45889999986543
Q ss_pred CCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhc
Q 040462 364 ESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNS 443 (726)
Q Consensus 364 ~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~ 443 (726)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecccccch
Q 040462 444 TKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMA 523 (726)
Q Consensus 444 ~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmA 523 (726)
+.++.||++||. +||+.|||.++++..... .|..++|||||
T Consensus 187 -------------------~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~~-------------~~~~~~GTS~A 227 (259)
T cd07473 187 -------------------DALASFSNYGKK-------TVDLAAPGVDILSTSPGG-------------GYGYMSGTSMA 227 (259)
T ss_pred -------------------CCcCcccCCCCC-------CcEEEeccCCeEeccCCC-------------cEEEeccHhHH
Confidence 345669999985 469999999999966543 78999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 040462 524 CPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAW 555 (726)
Q Consensus 524 aP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 555 (726)
||+|||++||++|++|.+++++||++|++||+
T Consensus 228 aP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 228 TPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 99999999999999999999999999999985
No 30
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=2e-40 Score=339.51 Aligned_cols=226 Identities=37% Similarity=0.510 Sum_probs=188.3
Q ss_pred CcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhccccCcCCCC
Q 040462 134 NIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDA 213 (726)
Q Consensus 134 gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag~~~~~~ 213 (726)
||+|||||+||+++||+|.+. ...+.+|..+. .....|..+|||||||+|++.....
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~------------~~~~~~~~~~~----------~~~~~~~~~HGT~vA~ii~~~~~~~- 57 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN------------IVGGANFTGDD----------NNDYQDGNGHGTHVAGIIAALDNGV- 57 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc------------ccCcccccCCC----------CCCCCCCCCCHHHHHHHHhcccCCC-
Confidence 799999999999999999864 11122221110 1355678999999999999975321
Q ss_pred ccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCCeEEEeccCCCCCCCccccHHHHHHHHHHhCCc
Q 040462 214 SFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGI 292 (726)
Q Consensus 214 ~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~a~~~a~~~Gi 292 (726)
.+.|+||+|+|+.+|+++..+ ....+++++++++++.|++|||+|||... ....+..++..+.++|+
T Consensus 58 --------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~----~~~~~~~~~~~a~~~gi 125 (229)
T cd07477 58 --------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS----DSPALREAIKKAYAAGI 125 (229)
T ss_pred --------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC----CCHHHHHHHHHHHHCCC
Confidence 238999999999999998876 67789999999999999999999999862 23455666678889999
Q ss_pred EEEEecCCCCCCCCcc--ccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCCCCCCcCC
Q 040462 293 LTLNSAGNSGSNLGFV--YSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFS 370 (726)
Q Consensus 293 ~vV~AAGN~g~~~~~~--~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 370 (726)
++|+||||++...... ++..+++|+||+++.+
T Consensus 126 liv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~---------------------------------------------- 159 (229)
T cd07477 126 LVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN---------------------------------------------- 159 (229)
T ss_pred EEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC----------------------------------------------
Confidence 9999999999876664 7889999999997644
Q ss_pred CCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEE
Q 040462 371 SQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAE 450 (726)
Q Consensus 371 ~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~ 450 (726)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecccccchhHHHHHH
Q 040462 451 ILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAV 530 (726)
Q Consensus 451 i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~ 530 (726)
+.+..||++|+.. |+.|||++|+++++.. .|..++|||||||+|||+
T Consensus 160 ------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~~-------------~~~~~~GTS~Aap~vag~ 206 (229)
T cd07477 160 ------------NNRASFSSTGPEV--------ELAAPGVDILSTYPNN-------------DYAYLSGTSMATPHVAGV 206 (229)
T ss_pred ------------CCcCCccCCCCCc--------eEEeCCCCeEEecCCC-------------CEEEEccHHHHHHHHHHH
Confidence 3456799999876 9999999999987754 688999999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhc
Q 040462 531 AAYVKSFHPDWSPSAIRSAIMTT 553 (726)
Q Consensus 531 aALl~~~~P~~sp~~Ik~~L~~T 553 (726)
+|||+|++|++++.+||++|++|
T Consensus 207 ~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 207 AALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred HHHHHHhCCCCCHHHHHHHHHhC
Confidence 99999999999999999999986
No 31
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=3.5e-41 Score=356.01 Aligned_cols=271 Identities=34% Similarity=0.485 Sum_probs=210.8
Q ss_pred EEEEEcccCCCCCCCCC-CCCCCCCCCCccccccCCCcccCCceeeeeeecCC----CCCCCCCCCCcchhhhccccCcC
Q 040462 136 IIGVIDSGIWPESESFS-DEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTT----DGTARDKDGHGTHTASTAAGNEV 210 (726)
Q Consensus 136 ~VgVIDtGid~~Hp~f~-~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~----~~~~~D~~gHGThVAgiaag~~~ 210 (726)
+|||||||||++||+|. .+ +. ..++.+.+.|.+ .....|..+|||||||+|+|..
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~HGT~va~ii~~~~- 60 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-FI------------------WSKVPGGYNFVDGNPNPSPSDDDNGHGTHVAGIIAGNG- 60 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-EE------------------EEEEEEEEETTTTBSTTTSSSTSSSHHHHHHHHHHHTT-
T ss_pred CEEEEcCCcCCCChhHccCC-cc------------------cccccceeeccCCCCCcCccccCCCccchhhhhccccc-
Confidence 69999999999999998 33 10 112223333322 3456778999999999999986
Q ss_pred CCCccccccCcceeecccCceEEEEEeeCCCCCCHHHHHHHHHHHH-hCCCeEEEeccCCC--CCCCccccHHHHHHHHH
Q 040462 211 KDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAI-ADGVDIITVSLGGN--IPVDFIKDAIAIGAFHA 287 (726)
Q Consensus 211 ~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~-~~gvdVIn~S~G~~--~~~~~~~~~~~~a~~~a 287 (726)
. .+.. ...|+||+|+|+.+|+++..+....+++.++++++ +++++|||+|||.. .......+.+..++..+
T Consensus 61 ~-~~~~-----~~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~ 134 (282)
T PF00082_consen 61 G-NNGP-----GINGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDILEEAIDYA 134 (282)
T ss_dssp S-SSSS-----SETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHHHHHHHHH
T ss_pred c-cccc-----ccccccccccccccccccccccccccccchhhhhhhccCCccccccccccccccccccccccccccccc
Confidence 2 2211 23899999999999998877677888999999999 89999999999883 12223445566777788
Q ss_pred HhCCcEEEEecCCCCCCCCc---cccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCCC
Q 040462 288 MEKGILTLNSAGNSGSNLGF---VYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSE 364 (726)
Q Consensus 288 ~~~Gi~vV~AAGN~g~~~~~---~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~ 364 (726)
.++|+++|+||||+|..... .+...+++|+||+.+..
T Consensus 135 ~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~---------------------------------------- 174 (282)
T PF00082_consen 135 EKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN---------------------------------------- 174 (282)
T ss_dssp HHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT----------------------------------------
T ss_pred cccCcceeeccccccccccccccccccccccccccccccc----------------------------------------
Confidence 99999999999999877653 55667899999987643
Q ss_pred CCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcC
Q 040462 365 SCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNST 444 (726)
Q Consensus 365 ~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~ 444 (726)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecccccchh
Q 040462 445 KKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMAC 524 (726)
Q Consensus 445 ~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAa 524 (726)
..++.||++|+.. .++++||||+|||.+|+++++... ...|..++||||||
T Consensus 175 ------------------~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~~~~~~~----------~~~~~~~~GTS~Aa 225 (282)
T PF00082_consen 175 ------------------GQPASYSNYGGPS-DDGRIKPDIAAPGGNILSAVPGSD----------RGSYTSFSGTSFAA 225 (282)
T ss_dssp ------------------SSBSTTSSBSTTE-TTCTTCEEEEEECSSEEEEETTTE----------SEEEEEEESHHHHH
T ss_pred ------------------ccccccccccccc-cccccccccccccccccccccccc----------cccccccCcCCchH
Confidence 2457899997543 278999999999999988886541 13588999999999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCCCCCcCCCCccCccccCC
Q 040462 525 PHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVN 581 (726)
Q Consensus 525 P~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~~~~~~~~~~~G~G~vn~~~A~~ 581 (726)
|+|||++|||+|++|+|++++||.+|++||+++........+..||||++|+.+|++
T Consensus 226 p~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 226 PVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTNGEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETTSSSSHHHHTTSBE-HHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCCCCCCCCCccCChhCHHHHhC
Confidence 999999999999999999999999999999998732223356788999999999974
No 32
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.3e-39 Score=331.93 Aligned_cols=221 Identities=25% Similarity=0.299 Sum_probs=177.4
Q ss_pred CcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhccccCcCCCC
Q 040462 134 NIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDA 213 (726)
Q Consensus 134 gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag~~~~~~ 213 (726)
||+|||||||||++||+|.+.-. .+..+.++ ++..+.....|..||||||||||++.
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~------------~~~~~~~~------~~~~~~~~~~d~~gHGT~vAgiia~~----- 57 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLAL------------DGEVTIDL------EIIVVSAEGGDKDGHGTACAGIIKKY----- 57 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccc------------cccccccc------ccccCCCCCCCCCCcHHHHHHHHHcc-----
Confidence 79999999999999999986511 11111110 11122455678899999999999874
Q ss_pred ccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCCeEEEeccCCCCCCCccccHHHHHHHHHHhCCc
Q 040462 214 SFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGI 292 (726)
Q Consensus 214 ~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~a~~~a~~~Gi 292 (726)
+|+++|+.+|+++..+ +..+++++||+|++++|++|||||||... ......+..++.++.++|+
T Consensus 58 -------------~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~--~~~~~~~~~~~~~a~~~g~ 122 (222)
T cd07492 58 -------------APEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPG--DRDFPLLKELLEYAYKAGG 122 (222)
T ss_pred -------------CCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC--CCcCHHHHHHHHHHHHCCC
Confidence 5999999999998876 88899999999999999999999999872 2233566777788889999
Q ss_pred EEEEecCCCCCCCCccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCCCCCCcCCCC
Q 040462 293 LTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQ 372 (726)
Q Consensus 293 ~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 372 (726)
++|+||||++.... .++..+++|+|++...++
T Consensus 123 l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~----------------------------------------------- 154 (222)
T cd07492 123 IIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD----------------------------------------------- 154 (222)
T ss_pred EEEEECCCCCCCCC-CCccCCceEEEEecCCCC-----------------------------------------------
Confidence 99999999987543 367888999999865331
Q ss_pred CCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEe
Q 040462 373 ACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEIL 452 (726)
Q Consensus 373 ~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~ 452 (726)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecccccchhHHHHHHHH
Q 040462 453 KTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAA 532 (726)
Q Consensus 453 ~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aA 532 (726)
.. +.+++ ++|+.|||.+|+++++.. .|..++|||||||+|||++|
T Consensus 155 -----------~~---~~~~~--------~~~~~apg~~i~~~~~~~-------------~~~~~~GTS~Aap~vaG~~A 199 (222)
T cd07492 155 -----------PK---SFWYI--------YVEFSADGVDIIAPAPHG-------------RYLTVSGNSFAAPHVTGMVA 199 (222)
T ss_pred -----------Cc---ccccC--------CceEEeCCCCeEeecCCC-------------CEEEeccHHHHHHHHHHHHH
Confidence 00 11133 349999999999987653 78999999999999999999
Q ss_pred HHHhhCCCCCHHHHHHHHHhccc
Q 040462 533 YVKSFHPDWSPSAIRSAIMTTAW 555 (726)
Q Consensus 533 Ll~~~~P~~sp~~Ik~~L~~TA~ 555 (726)
||+|++|+|+++|||++|++||+
T Consensus 200 ll~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 200 LLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred HHHHhCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999985
No 33
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.2e-40 Score=338.05 Aligned_cols=216 Identities=23% Similarity=0.270 Sum_probs=169.1
Q ss_pred CCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhccccCcCC
Q 040462 132 ESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVK 211 (726)
Q Consensus 132 G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag~~~~ 211 (726)
+++|+|||||||||++||+|.++ ...+.+|.+...- + ........|..||||||||||+
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~------------i~~~~~~~~~~~~-~---~~~~~~~~d~~gHGT~vAgiI~----- 60 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK------------IIGGKSFSPYEGD-G---NKVSPYYVSADGHGTAMARMIC----- 60 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc------------cccCCCCCCCCCC-c---ccCCCCCCCCCCcHHHHHHHHH-----
Confidence 78999999999999999999864 2223333221100 0 0001223578999999999996
Q ss_pred CCccccccCcceeecccCceEEEEEeeCCCC-------CCHHHHHHHHHHHHhCCCeEEEeccCCCCCC--CccccHHHH
Q 040462 212 DASFYGVGQGTARGGVPSARIAAYKVCNPSG-------CASTDILAAFDDAIADGVDIITVSLGGNIPV--DFIKDAIAI 282 (726)
Q Consensus 212 ~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-------~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~--~~~~~~~~~ 282 (726)
|+||+|+|+.+|+++..+ ++...+++||+||+++|+||||||||..... ......+..
T Consensus 61 -------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~~~~~~l~~ 127 (247)
T cd07491 61 -------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPEDNDNDINELEN 127 (247)
T ss_pred -------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeecccccccccchHHHHH
Confidence 369999999999998643 4678899999999999999999999987221 123567888
Q ss_pred HHHHHHhCCcEEEEecCCCCCCCC-cc--ccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEec
Q 040462 283 GAFHAMEKGILTLNSAGNSGSNLG-FV--YSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHG 359 (726)
Q Consensus 283 a~~~a~~~Gi~vV~AAGN~g~~~~-~~--~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~ 359 (726)
++.+|.++|++||+||||+|.... .+ +...|++|+|||++.+
T Consensus 128 ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~~----------------------------------- 172 (247)
T cd07491 128 AIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADED----------------------------------- 172 (247)
T ss_pred HHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCCC-----------------------------------
Confidence 888999999999999999998764 33 4577999999998655
Q ss_pred CCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHH
Q 040462 360 KEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLIS 439 (726)
Q Consensus 360 ~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~ 439 (726)
T Consensus 173 -------------------------------------------------------------------------------- 172 (247)
T cd07491 173 -------------------------------------------------------------------------------- 172 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeeccc
Q 040462 440 YKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESG 519 (726)
Q Consensus 440 ~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sG 519 (726)
+.++.||++|+.. |+.|||++|+++++.. ....|..++|
T Consensus 173 -----------------------g~~~~~S~~g~~v--------d~~APG~~i~s~~~~~----------~~~~~~~~sG 211 (247)
T cd07491 173 -----------------------GGADAPVGDEDRV--------DYILPGENVEARDRPP----------LSNSFVTHTG 211 (247)
T ss_pred -----------------------CCCccccCCCCcc--------eEEeCCCceecCCcCC----------CCCCeeeecc
Confidence 3456799999987 9999999999886521 1147999999
Q ss_pred ccchhHHHHHHHHHHHhh
Q 040462 520 TSMACPHAAAVAAYVKSF 537 (726)
Q Consensus 520 TSmAaP~VAG~aALl~~~ 537 (726)
||||||||||++|||++.
T Consensus 212 TS~Atp~vaGvaAL~l~~ 229 (247)
T cd07491 212 SSVATALAAGLAALILYC 229 (247)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999985
No 34
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=1.1e-39 Score=347.50 Aligned_cols=251 Identities=22% Similarity=0.208 Sum_probs=183.6
Q ss_pred cccchhhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCC--CCCC
Q 040462 119 MGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTAR--DKDG 196 (726)
Q Consensus 119 ~g~~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~--D~~g 196 (726)
+++. .+|+.+++|+||+|+|||||||++||+|.++-.. ..+++|..+. ....+. |..|
T Consensus 26 ~~~~-~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~----------~~~~~~~~~~---------~~~~~~~~~~~g 85 (297)
T cd04059 26 LNVT-PAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP----------EASYDFNDND---------PDPTPRYDDDNS 85 (297)
T ss_pred cccH-HHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc----------cccccccCCC---------CCCCCccccccc
Confidence 3444 8999999999999999999999999999865211 0112221100 012222 7889
Q ss_pred CcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCCCCHHHHHHHHHHHHhCCCeEEEeccCCCCCCC--
Q 040462 197 HGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIADGVDIITVSLGGNIPVD-- 274 (726)
Q Consensus 197 HGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~-- 274 (726)
|||||||||+|+.... .| ..||||+|+|+.+|+++.. ........++.++.+ .++|||+|||......
T Consensus 86 HGT~vAgiiag~~~~~---~~-----~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~Vin~S~g~~~~~~~~ 155 (297)
T cd04059 86 HGTRCAGEIAAVGNNG---IC-----GVGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPD-YIDIYSNSWGPDDDGKTV 155 (297)
T ss_pred cCcceeeEEEeecCCC---cc-----cccccccceEeEEEecCCc-cccHHHHHHHhcccC-CceEEECCCCCCCCCCcc
Confidence 9999999999984221 11 2899999999999999765 334455566665544 5699999999763221
Q ss_pred -ccccHHHHHHHHHHh-----CCcEEEEecCCCCCCCCc----cccCCCceEEEeeeccCcceeeEEEeCCCceEeeeee
Q 040462 275 -FIKDAIAIGAFHAME-----KGILTLNSAGNSGSNLGF----VYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSI 344 (726)
Q Consensus 275 -~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~~~~----~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~ 344 (726)
........++.++.+ +|++||+||||+|..... .....|++|+|||++.+
T Consensus 156 ~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~-------------------- 215 (297)
T cd04059 156 DGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN-------------------- 215 (297)
T ss_pred CCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC--------------------
Confidence 122334444445443 699999999999983221 22467899999997654
Q ss_pred ccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeee
Q 040462 345 NSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSL 424 (726)
Q Consensus 345 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ 424 (726)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCcc-------EEeecC
Q 040462 425 PAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVD-------ILAAVS 497 (726)
Q Consensus 425 p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~-------I~sa~~ 497 (726)
+.++.||++|+.. ++.|||.. |+++..
T Consensus 216 --------------------------------------g~~~~~s~~g~~~--------~~~a~g~~~~~~~~~i~~~~~ 249 (297)
T cd04059 216 --------------------------------------GVRASYSEVGSSV--------LASAPSGGSGNPEASIVTTDL 249 (297)
T ss_pred --------------------------------------CCCcCCCCCCCcE--------EEEecCCCCCCCCCceEeCCC
Confidence 3557899999987 89999987 665544
Q ss_pred CCCCCCCCCCCccccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 040462 498 PLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAW 555 (726)
Q Consensus 498 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 555 (726)
.. ....|..++|||||||+|||++|||+|+||+|++.|||++|++||+
T Consensus 250 ~~----------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 250 GG----------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred CC----------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 31 0136788999999999999999999999999999999999999985
No 35
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=2.9e-39 Score=343.65 Aligned_cols=254 Identities=28% Similarity=0.349 Sum_probs=179.1
Q ss_pred CcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhccccCcCCCC
Q 040462 134 NIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDA 213 (726)
Q Consensus 134 gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag~~~~~~ 213 (726)
.|+|||||||||++||+|.+.-.. ....+. .....+.. ......+.....|..||||||||+|+|+..
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~-~~~~~~--~~~~~~~~------~~~~~~~~~~~~d~~gHGT~vAgiia~~~~--- 68 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISS-YSKNLV--PKGGYDGK------EAGETGDINDIVDKLGHGTAVAGQIAANGN--- 68 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhcccc-cccccc--cCCCcCCc------cccccCCCCcCCCCCCcHhHHHHHHhcCCC---
Confidence 489999999999999999864110 000000 00000000 000000123456779999999999998631
Q ss_pred ccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCCeEEEeccCCCCCCC-------ccccHHHHHHH
Q 040462 214 SFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGVDIITVSLGGNIPVD-------FIKDAIAIGAF 285 (726)
Q Consensus 214 ~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~-------~~~~~~~~a~~ 285 (726)
..||||+|+|+.+|+++..+ ....+++++|++|++++++|||+|||...... ...+.+..++.
T Consensus 69 ---------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~~~~~~~~~i~ 139 (294)
T cd07482 69 ---------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAIN 139 (294)
T ss_pred ---------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchhhhHHHHHHHH
Confidence 15999999999999998876 48899999999999999999999999753211 12245666777
Q ss_pred HHHhCCcEEEEecCCCCCCC----------------------CccccCCCceEEEeeeccCcceeeEEEeCCCceEeeee
Q 040462 286 HAMEKGILTLNSAGNSGSNL----------------------GFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYS 343 (726)
Q Consensus 286 ~a~~~Gi~vV~AAGN~g~~~----------------------~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~ 343 (726)
.+.++|++||+||||+|... ...+...+++|+|||++.+
T Consensus 140 ~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga~~~~------------------- 200 (294)
T cd07482 140 YAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSATDNN------------------- 200 (294)
T ss_pred HHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEEEEeeCCC-------------------
Confidence 88899999999999999654 1233455666777665433
Q ss_pred eccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeee
Q 040462 344 INSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVS 423 (726)
Q Consensus 344 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~ 423 (726)
T Consensus 201 -------------------------------------------------------------------------------- 200 (294)
T cd07482 201 -------------------------------------------------------------------------------- 200 (294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCC--
Q 040462 424 LPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAP-- 501 (726)
Q Consensus 424 ~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~-- 501 (726)
+.++.||++|+.. +|++|||+++.........
T Consensus 201 ---------------------------------------~~~~~~S~~g~~~-------~~~~apG~~~~~~~~~~~~~~ 234 (294)
T cd07482 201 ---------------------------------------GNLSSFSNYGNSR-------IDLAAPGGDFLLLDQYGKEKW 234 (294)
T ss_pred ---------------------------------------CCcCccccCCCCc-------ceEECCCCCcccccccCcccc
Confidence 4557799998754 4999999998532211100
Q ss_pred CCCC-------CCCccccceeecccccchhHHHHHHHHHHHhhCCCCCH-HHHHHHHHhc
Q 040462 502 ISTD-------PEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSP-SAIRSAIMTT 553 (726)
Q Consensus 502 ~~~~-------~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp-~~Ik~~L~~T 553 (726)
.... ........|..++|||||||+|||++|||+|++|.|++ .|||++|++|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 235 VNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred ccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHhhC
Confidence 0000 01123457899999999999999999999999999999 9999999987
No 36
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=5.2e-38 Score=328.75 Aligned_cols=243 Identities=28% Similarity=0.333 Sum_probs=189.0
Q ss_pred CCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhccccCcC
Q 040462 131 VESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEV 210 (726)
Q Consensus 131 ~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag~~~ 210 (726)
+|+||+|+|||+||+++||+|.+......... ..++. ......|..+|||||||+|+|+..
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~~~~----------~~~~~---------~~~~~~~~~~HGT~vagiiag~~~ 61 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEASYYV----------AVNDA---------GYASNGDGDSHGTHVAGVIAAARD 61 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccccccccc----------ccccc---------cCCCCCCCCChHHHHHHHHhcCcC
Confidence 69999999999999999999987622110000 00000 123456789999999999999853
Q ss_pred CCCccccccCcceeecccCceEEEEEeeCCCC--CCHHHHHHHHHHHHhCCCeEEEeccCCCCCCC-----------ccc
Q 040462 211 KDASFYGVGQGTARGGVPSARIAAYKVCNPSG--CASTDILAAFDDAIADGVDIITVSLGGNIPVD-----------FIK 277 (726)
Q Consensus 211 ~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~-----------~~~ 277 (726)
. ....|+||+|+|+.+|+++..+ +....+.++++++++.+++|||+|||...... ...
T Consensus 62 ~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~ 132 (267)
T cd04848 62 G---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQG 132 (267)
T ss_pred C---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCcccccccchhhhccccc
Confidence 2 2348999999999999998764 67788999999999999999999999873221 245
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCCCCCCCcc---------ccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCC
Q 040462 278 DAIAIGAFHAMEKGILTLNSAGNSGSNLGFV---------YSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFA 348 (726)
Q Consensus 278 ~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~---------~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~ 348 (726)
..+...+..+.++|+++|+||||++...... +...+++|+||+.+.+.
T Consensus 133 ~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~----------------------- 189 (267)
T cd04848 133 NTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG----------------------- 189 (267)
T ss_pred hHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC-----------------------
Confidence 6677778889999999999999998654333 23567899999986552
Q ss_pred CCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEE
Q 040462 349 MKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVA 428 (726)
Q Consensus 349 ~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~ 428 (726)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccc--cCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCC
Q 040462 429 VSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAP--FSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDP 506 (726)
Q Consensus 429 i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~--fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~ 506 (726)
.... ||++|+.. -.+++.|||.+|+++.+..
T Consensus 190 -----------------------------------~~~~~~~s~~~~~~-----~~~~~~apG~~i~~~~~~~------- 222 (267)
T cd04848 190 -----------------------------------TIASYSYSNRCGVA-----ANWCLAAPGENIYSTDPDG------- 222 (267)
T ss_pred -----------------------------------Ccccccccccchhh-----hhheeecCcCceeecccCC-------
Confidence 1222 47887643 2347999999999987631
Q ss_pred CCccccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 040462 507 EDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAW 555 (726)
Q Consensus 507 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 555 (726)
...|..++|||||||+|||++||++|++|+|++++||++|++||+
T Consensus 223 ----~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 223 ----GNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred ----CCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 137889999999999999999999999999999999999999985
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-36 Score=319.40 Aligned_cols=351 Identities=22% Similarity=0.337 Sum_probs=261.9
Q ss_pred CcEEEEEeCCCCCCCCcchhHHHHHHHHhhcCCC------CCCcEEEeecceeeEEEEEeC-----HHHHHHHHcCCCeE
Q 040462 32 RKVYIVYIGSLPKGEYVTSSHHQSILQEVVEGSS------VGDVLVRSYRRSFNGFAAKLT-----DLERQKLASMEEVV 100 (726)
Q Consensus 32 ~~~yiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~y~~~~~g~s~~l~-----~~~~~~L~~~p~V~ 100 (726)
+..|||+|+.... ...+..-+.+.+.+..- .+...--.|-.-|.-+-++-. .-+++.|..+|+|+
T Consensus 49 e~EyIv~F~~y~~----Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~vk 124 (1033)
T KOG4266|consen 49 ESEYIVRFKQYKP----AKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPDVK 124 (1033)
T ss_pred cceeEEEeccccc----chHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCCce
Confidence 5679999987544 22333444444442111 111222344445554444432 23478899999999
Q ss_pred EEEeCceecccc---------------------------------CCCc--c----------ccccchhhccCCCCCCCc
Q 040462 101 SVFPSRTLQFHT---------------------------------TRSW--D----------FMGLNQSITRKHSVESNI 135 (726)
Q Consensus 101 ~v~~~~~~~~~~---------------------------------~~s~--~----------~~g~~~~~w~~~~~G~gV 135 (726)
.|.|.+.+..-. +..| . .++.+ -+|+.|++|++|
T Consensus 125 ~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad-~LWk~GyTGa~V 203 (1033)
T KOG4266|consen 125 VVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGAD-HLWKKGYTGAKV 203 (1033)
T ss_pred eecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchh-hHHhccccCCce
Confidence 999876653200 0011 1 12333 699999999999
Q ss_pred EEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhccccCcCCCCcc
Q 040462 136 IIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDASF 215 (726)
Q Consensus 136 ~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag~~~~~~~~ 215 (726)
+|||.|||+.-+||.|+.-. -...|. ....-.|.-||||.|||+|||..
T Consensus 204 kvAiFDTGl~~~HPHFrnvK---ERTNWT----------------------NE~tLdD~lgHGTFVAGvia~~~------ 252 (1033)
T KOG4266|consen 204 KVAIFDTGLRADHPHFRNVK---ERTNWT----------------------NEDTLDDNLGHGTFVAGVIAGRN------ 252 (1033)
T ss_pred EEEEeecccccCCccccchh---hhcCCc----------------------CccccccCcccceeEeeeeccch------
Confidence 99999999999999997420 011221 13456678999999999999973
Q ss_pred ccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCCeEEEeccCCCCCCCccccHHHHHHHHHHhCCcEE
Q 040462 216 YGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILT 294 (726)
Q Consensus 216 ~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~v 294 (726)
...|.||+++|+++||+-+.. .+.+.+++|+.||+....||+|+|+|++ ++.+.++-.-+.+....+|++
T Consensus 253 ------ec~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGP---DfmD~PFVeKVwEltAnNvIM 323 (1033)
T KOG4266|consen 253 ------ECLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGP---DFMDLPFVEKVWELTANNVIM 323 (1033)
T ss_pred ------hhcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCc---ccccchHHHHHHhhccCcEEE
Confidence 237889999999999998866 8899999999999999999999999986 567778777777888999999
Q ss_pred EEecCCCCCCCCccccCCC--ceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCCCCCCcCCCC
Q 040462 295 LNSAGNSGSNLGFVYSVAP--WLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQ 372 (726)
Q Consensus 295 V~AAGN~g~~~~~~~~~~p--~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 372 (726)
|.|+||+||-.++..+.+. .+|.||..+.|
T Consensus 324 vSAiGNDGPLYGTLNNPaDQsDViGVGGIdfd------------------------------------------------ 355 (1033)
T KOG4266|consen 324 VSAIGNDGPLYGTLNNPADQSDVIGVGGIDFD------------------------------------------------ 355 (1033)
T ss_pred EEecCCCCcceeecCCcccccceeeecccccc------------------------------------------------
Confidence 9999999998777665443 45555543222
Q ss_pred CCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEe
Q 040462 373 ACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEIL 452 (726)
Q Consensus 373 ~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~ 452 (726)
T Consensus 356 -------------------------------------------------------------------------------- 355 (1033)
T KOG4266|consen 356 -------------------------------------------------------------------------------- 355 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeecCCCCCcccccCCCCCCCC----CCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecccccchhHHHH
Q 040462 453 KTEAIKDFDAPVVAPFSSRGPNAI----LPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAA 528 (726)
Q Consensus 453 ~~~~~~~~~~~~~a~fSs~GP~~~----~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VA 528 (726)
+.++.|||||-+.. ..+++||||++-|.+|....... +-..+||||.|+|.||
T Consensus 356 ----------D~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~~-------------GCr~LSGTSVaSPVVA 412 (1033)
T KOG4266|consen 356 ----------DHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVST-------------GCRSLSGTSVASPVVA 412 (1033)
T ss_pred ----------chhhhhccCCcceeecCCcccccCCceEeeccccccCcccc-------------cchhccCCcccchhhh
Confidence 67899999997652 57899999999999987664433 6778999999999999
Q ss_pred HHHHHHHh----hCCCCCHHHHHHHHHhccccCCCCCCCCCCCcCCCCccCccccCCC
Q 040462 529 AVAAYVKS----FHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVNP 582 (726)
Q Consensus 529 G~aALl~~----~~P~~sp~~Ik~~L~~TA~~i~~~~~~~~~~~~G~G~vn~~~A~~~ 582 (726)
|+++||.+ +.--+.|+-+|++|+..|..+... .-+.||+|++|+.++.+-
T Consensus 413 Gav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~----NMfEQGaGkldLL~syqi 466 (1033)
T KOG4266|consen 413 GAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP----NMFEQGAGKLDLLESYQI 466 (1033)
T ss_pred ceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCC----chhhccCcchhHHHHHHH
Confidence 99999976 334579999999999999988764 468999999999998763
No 38
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.4e-33 Score=285.56 Aligned_cols=196 Identities=20% Similarity=0.190 Sum_probs=144.5
Q ss_pred CCCCCCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCCCCHHHHHHHHHHH--HhCCCeEEEecc
Q 040462 190 TARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDA--IADGVDIITVSL 267 (726)
Q Consensus 190 ~~~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A--~~~gvdVIn~S~ 267 (726)
...|..+|||||||||||. .|++|+++|+..++... ....+..+++|+ .+.+++||||||
T Consensus 32 ~~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~~---~~~~~~~~i~~~~~~~~gv~VINmS~ 93 (247)
T cd07488 32 RNNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGIK---SNNGQWQECLEAQQNGNNVKIINHSY 93 (247)
T ss_pred CCCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCCC---CCCccHHHHHHHHHhcCCceEEEeCC
Confidence 4568999999999999997 56679999987655322 233466777888 667999999999
Q ss_pred CCCCCCC-----ccccHHHHHHHHHHhC-CcEEEEecCCCCCCC-----CccccCCCceEEEeeeccCcceeeEEEeCCC
Q 040462 268 GGNIPVD-----FIKDAIAIGAFHAMEK-GILTLNSAGNSGSNL-----GFVYSVAPWLMSVAASTTDRLFVDKVLLGNG 336 (726)
Q Consensus 268 G~~~~~~-----~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~-----~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g 336 (726)
|...... ...+.+..+++.+.++ |+++|+||||+|.+. ...+..++++|+|||++.....
T Consensus 94 G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~~--------- 164 (247)
T cd07488 94 GEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGDR--------- 164 (247)
T ss_pred ccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCCc---------
Confidence 9873332 1234566777777766 999999999999853 2335578899999998654210
Q ss_pred ceEeeeeeccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCC
Q 040462 337 ATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYE 416 (726)
Q Consensus 337 ~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~ 416 (726)
T Consensus 165 -------------------------------------------------------------------------------- 164 (247)
T cd07488 165 -------------------------------------------------------------------------------- 164 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeec
Q 040462 417 KVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAV 496 (726)
Q Consensus 417 ~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~ 496 (726)
...+.||++|-....++..||||+|||++|++
T Consensus 165 ----------------------------------------------~~~s~~sn~~~~~~~~~~~~~di~APG~~i~s-- 196 (247)
T cd07488 165 ----------------------------------------------FFASDVSNAGSEINSYGRRKVLIVAPGSNYNL-- 196 (247)
T ss_pred ----------------------------------------------ceecccccccCCCCCCCCceeEEEEeeeeEEC--
Confidence 11244565432222377889999999999998
Q ss_pred CCCCCCCCCCCCccccceeecccccchhHHHHHHHHHHHhhCCCCC------HHHHHHHHHhc
Q 040462 497 SPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWS------PSAIRSAIMTT 553 (726)
Q Consensus 497 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s------p~~Ik~~L~~T 553 (726)
+. +.|..++|||||||||||++|||++++|++. --++|.+|+.|
T Consensus 197 ~~-------------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 197 PD-------------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred CC-------------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 22 2688999999999999999999999987665 45567777665
No 39
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=100.00 E-value=1.8e-31 Score=273.52 Aligned_cols=234 Identities=35% Similarity=0.500 Sum_probs=178.6
Q ss_pred cEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhccccCcCCCCc
Q 040462 135 IIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDAS 214 (726)
Q Consensus 135 V~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag~~~~~~~ 214 (726)
|+|+|||+|++++||+|... ......+.++..+.. ......|..+||||||++|++.....
T Consensus 1 v~VaiiD~G~~~~~~~~~~~---------~~~~~~~~~~~~~~~--------~~~~~~~~~~HGt~va~~i~~~~~~~-- 61 (241)
T cd00306 1 VTVAVIDTGVDPDHPDLDGL---------FGGGDGGNDDDDNEN--------GPTDPDDGNGHGTHVAGIIAASANNG-- 61 (241)
T ss_pred CEEEEEeCCCCCCCcchhcc---------ccCcccccccccCcC--------CCCCCCCCCCcHHHHHHHHhcCCCCC--
Confidence 68999999999999987211 000111111111100 01245678999999999999985321
Q ss_pred cccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHH-hCCCeEEEeccCCCCCCCccccHHHHHHHHHHhC-C
Q 040462 215 FYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAI-ADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEK-G 291 (726)
Q Consensus 215 ~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~-~~gvdVIn~S~G~~~~~~~~~~~~~~a~~~a~~~-G 291 (726)
...|+||+++|+.+|+....+ .....+++++++++ +.+++|||+|||..... ....+...+..+.++ |
T Consensus 62 -------~~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~--~~~~~~~~~~~~~~~~~ 132 (241)
T cd00306 62 -------GGVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSP--PSSALSEAIDYALAKLG 132 (241)
T ss_pred -------CCEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCC--CCHHHHHHHHHHHHhcC
Confidence 117999999999999998766 67889999999999 89999999999987321 345566677788877 9
Q ss_pred cEEEEecCCCCCCCC---ccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCCCCCCc
Q 040462 292 ILTLNSAGNSGSNLG---FVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPE 368 (726)
Q Consensus 292 i~vV~AAGN~g~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~ 368 (726)
+++|+||||.+.... ..+...+++|+||+++.+.
T Consensus 133 ~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~------------------------------------------- 169 (241)
T cd00306 133 VLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG------------------------------------------- 169 (241)
T ss_pred eEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC-------------------------------------------
Confidence 999999999998876 4778899999999986552
Q ss_pred CCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcCCCCe
Q 040462 369 FSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPE 448 (726)
Q Consensus 369 ~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~ 448 (726)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeeeeecCCCCCccc-ccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecccccchhHHH
Q 040462 449 AEILKTEAIKDFDAPVVA-PFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHA 527 (726)
Q Consensus 449 ~~i~~~~~~~~~~~~~~a-~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~V 527 (726)
... .++++|+ |||+.|||.++...... ....+..++|||||||+|
T Consensus 170 ---------------~~~~~~~~~~~--------~~~~~apg~~~~~~~~~-----------~~~~~~~~~GTS~Aap~v 215 (241)
T cd00306 170 ---------------TPASPSSNGGA--------GVDIAAPGGDILSSPTT-----------GGGGYATLSGTSMAAPIV 215 (241)
T ss_pred ---------------CccCCcCCCCC--------CceEEeCcCCccCcccC-----------CCCCeEeeccHHHHHHHH
Confidence 111 3444554 56999999999875111 124799999999999999
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHhc
Q 040462 528 AAVAAYVKSFHPDWSPSAIRSAIMTT 553 (726)
Q Consensus 528 AG~aALl~~~~P~~sp~~Ik~~L~~T 553 (726)
||++||++|++|++++.++|++|++|
T Consensus 216 aG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 216 AGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 99999999999999999999999875
No 40
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.2e-31 Score=297.27 Aligned_cols=239 Identities=27% Similarity=0.342 Sum_probs=185.6
Q ss_pred CCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCC-C--CCHHHHHHHHHHHHhCCCeEEEeccCCC
Q 040462 194 KDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPS-G--CASTDILAAFDDAIADGVDIITVSLGGN 270 (726)
Q Consensus 194 ~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~-g--~~~~~i~~ai~~A~~~gvdVIn~S~G~~ 270 (726)
...|||||||||+|+....-. ..||||+|+|+..++.+.. | .+...+.+|+..+++..+||||||+|-.
T Consensus 309 Sg~HGTHVAgIa~anhpe~p~--------~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPETPE--------LNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCCCcc--------ccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 456999999999999755322 3789999999999998753 3 5667899999999999999999999987
Q ss_pred CCCCccccHHHHHHHHHHhCCcEEEEecCCCCCCCCcccc---CCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccC
Q 040462 271 IPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYS---VAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSF 347 (726)
Q Consensus 271 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~---~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~ 347 (726)
...+.....++..-..+-++|+++|+||||+||...+++. ....+|.|||.-......+
T Consensus 381 a~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a------------------ 442 (1304)
T KOG1114|consen 381 AHLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQA------------------ 442 (1304)
T ss_pred CCCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHh------------------
Confidence 5555555566655555568999999999999999877764 3447888888532211000
Q ss_pred CCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEE
Q 040462 348 AMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAV 427 (726)
Q Consensus 348 ~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~ 427 (726)
.|.+.
T Consensus 443 -----~y~~~---------------------------------------------------------------------- 447 (1304)
T KOG1114|consen 443 -----EYSVR---------------------------------------------------------------------- 447 (1304)
T ss_pred -----hhhhh----------------------------------------------------------------------
Confidence 00000
Q ss_pred EeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCC
Q 040462 428 AVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPE 507 (726)
Q Consensus 428 ~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~ 507 (726)
.+-...+..+|||||+. ||-+--.|.|||+.|-+- +...
T Consensus 448 -------------------------------e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsV-P~~t------- 486 (1304)
T KOG1114|consen 448 -------------------------------EPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASV-PQYT------- 486 (1304)
T ss_pred -------------------------------ccCCCCccccccCCCCc--CCCcceEEecCCccccCC-chhh-------
Confidence 01124577899999998 898988999999998543 2110
Q ss_pred CccccceeecccccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHhccccCCCCCCCCCCCcCCCCccCccccCC
Q 040462 508 DKRRVKYSIESGTSMACPHAAAVAAYVKS----FHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVN 581 (726)
Q Consensus 508 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~~sp~~Ik~~L~~TA~~i~~~~~~~~~~~~G~G~vn~~~A~~ 581 (726)
-..-..|+|||||+|+++|.+|||++ .+-.|||..||.+|++||+++.+. .+|.+|.|++++.+|.+
T Consensus 487 ---lq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i----d~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 487 ---LQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI----DSFAQGQGMLQVDKAYE 557 (1304)
T ss_pred ---hhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc----chhccCcceeehhHHHH
Confidence 12456899999999999999999865 568899999999999999999886 68999999999999976
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.3e-24 Score=243.56 Aligned_cols=269 Identities=30% Similarity=0.437 Sum_probs=199.5
Q ss_pred hhccC--CCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCC--CCCCCCCcc
Q 040462 124 SITRK--HSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGT--ARDKDGHGT 199 (726)
Q Consensus 124 ~~w~~--~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~--~~D~~gHGT 199 (726)
..|.. +.+|+||+|+|||+||+..||+|.+.... +.+|. ..... ..|..+|||
T Consensus 131 ~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~------------~~~~~-----------~~~~~~~~~d~~~hGt 187 (508)
T COG1404 131 ALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA------------GGDFV-----------DGDPEPPFLDDNGHGT 187 (508)
T ss_pred cccccccCCCCCCeEEEEeccCCCCCChhhhccccc------------ccccc-----------cCCCCCCCCCCCCCcc
Confidence 67887 89999999999999999999999876211 11221 11122 578999999
Q ss_pred hhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCC-C-CCHHHHHHHHHHHHhCC--CeEEEeccCCCCCCCc
Q 040462 200 HTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPS-G-CASTDILAAFDDAIADG--VDIITVSLGGNIPVDF 275 (726)
Q Consensus 200 hVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~-g-~~~~~i~~ai~~A~~~g--vdVIn~S~G~~~~~~~ 275 (726)
||++++++....+ .....|+||+++++.+|++... | ....+++.+|+++++.+ +++||||+|.. ....
T Consensus 188 ~vag~ia~~~~~~-------~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s~g~~-~~~~ 259 (508)
T COG1404 188 HVAGTIAAVIFDN-------GAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGS-LSDS 259 (508)
T ss_pred eeeeeeeeecccC-------CCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEecCCCC-cccc
Confidence 9999999842110 1113899999999999999876 5 77788899999999999 99999999985 3333
Q ss_pred cccHHHHHHHHHHhCC-cEEEEecCCCCCCCCc----cccCC--CceEEEeeeccCcceeeEEEeCCCceEeeeeeccCC
Q 040462 276 IKDAIAIGAFHAMEKG-ILTLNSAGNSGSNLGF----VYSVA--PWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFA 348 (726)
Q Consensus 276 ~~~~~~~a~~~a~~~G-i~vV~AAGN~g~~~~~----~~~~~--p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~ 348 (726)
....+..++..++..| +++|+++||.+.+... .+... +.+++|++.+.
T Consensus 260 ~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~------------------------- 314 (508)
T COG1404 260 ASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL------------------------- 314 (508)
T ss_pred ccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC-------------------------
Confidence 4456666677887777 9999999999977521 22222 35666666432
Q ss_pred CCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEE
Q 040462 349 MKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVA 428 (726)
Q Consensus 349 ~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~ 428 (726)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEe-----ecCCCCCCC
Q 040462 429 VSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILA-----AVSPLAPIS 503 (726)
Q Consensus 429 i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~s-----a~~~~~~~~ 503 (726)
.+.++.||++|+.. ..|++|||.+|.+ .+++..
T Consensus 315 ---------------------------------~~~~~~~s~~g~~~------~~~~~apg~~i~~~~~~~~~~~~~--- 352 (508)
T COG1404 315 ---------------------------------SDTVASFSNDGSPT------GVDIAAPGVNILSLSAVNTLPGDG--- 352 (508)
T ss_pred ---------------------------------CCccccccccCCCC------CcceeCCCccccccccceeeeCCc---
Confidence 14668899999751 2299999999987 333320
Q ss_pred CCCCCccccceeecccccchhHHHHHHHHHHHhhCC-CCCHHHHHHHHHhccccCCCCCCCCCCCcCCCCccCccccCC
Q 040462 504 TDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHP-DWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVN 581 (726)
Q Consensus 504 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P-~~sp~~Ik~~L~~TA~~i~~~~~~~~~~~~G~G~vn~~~A~~ 581 (726)
..|..++||||++|||+|++||+++.+| .+++.+++..+..++.. .. .......++.|..+...+..
T Consensus 353 --------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~ 420 (508)
T COG1404 353 --------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGL-TP--LSGVDNLVGGGLANLDAAAT 420 (508)
T ss_pred --------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhcccc-cc--CCccccccccCccccccccc
Confidence 2499999999999999999999999999 89999999999988874 11 11144567777666655544
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=5.2e-24 Score=216.38 Aligned_cols=407 Identities=16% Similarity=0.192 Sum_probs=239.7
Q ss_pred HHHHHHHHHHHhhhhcccccCCCcEEEEEeCCCCCCCCcchhHHHHHHHHhhc---CCCCCCcEEEeecceeeEEE---E
Q 040462 10 FQCLSFIIFFNMTSLWAATYDDRKVYIVYIGSLPKGEYVTSSHHQSILQEVVE---GSSVGDVLVRSYRRSFNGFA---A 83 (726)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~yiV~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~y~~~~~g~s---~ 83 (726)
+++.++++|+...-+..+-..-.+.|+|+|++.... +. ...+.+.-.- ..-....-+|.| .-+++. -
T Consensus 9 l~a~fl~lf~~~~gag~~~~vftnhflv~l~~g~g~----~~-ah~va~~hgf~nrg~~~a~d~eyhf--~h~~l~har~ 81 (629)
T KOG3526|consen 9 LIAVFLSLFCVMIGAGEAVDVFTNHFLVHLKEGGGL----ED-AHRVAKRHGFINRGQVAASDNEYHF--VHPALVHART 81 (629)
T ss_pred HHHHHHHHHHHHhccccCcceeeeeEEEEEeccCCh----HH-HHHHHHHhCccccccccccCceeee--eccccchhhh
Confidence 344444455444444444444577899999987542 11 1122222110 001111223333 223332 1
Q ss_pred EeCHHHHHHHHcCCCeEEEEeCceec------------------cccCCCccccccch------------hhccCCCCCC
Q 040462 84 KLTDLERQKLASMEEVVSVFPSRTLQ------------------FHTTRSWDFMGLNQ------------SITRKHSVES 133 (726)
Q Consensus 84 ~l~~~~~~~L~~~p~V~~v~~~~~~~------------------~~~~~s~~~~g~~~------------~~w~~~~~G~ 133 (726)
+-+...-++|.++|.|+.+....-+. +..+.+|-+....+ .+|..+++|+
T Consensus 82 rrsl~h~~~l~~dp~v~~a~qq~gf~r~krgyrp~~~fd~~~~dplf~~qwylkntgqaggk~rldlnv~~awa~g~tgk 161 (629)
T KOG3526|consen 82 RRSLGHHAKLHNDPEVKMALQQEGFDRKKRGYRPINEFDINMNDPLFTKQWYLKNTGQAGGKPRLDLNVAEAWALGYTGK 161 (629)
T ss_pred hcccchhhhhccChhHhhhhhccccchhhccCCchhhhccccCCcccceeeeeecccccCCcccccccHHHHHhhcccCC
Confidence 12223345677777777654322211 12334565544332 7999999999
Q ss_pred CcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhccccCcCCCC
Q 040462 134 NIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDA 213 (726)
Q Consensus 134 gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag~~~~~~ 213 (726)
+|+++|+|.||||-||++..+ | ..+..++|..|+-++..||.++ -.+.|||.|||-+++...+
T Consensus 162 nvttaimddgvdymhpdlk~n--------y--naeasydfssndpfpyprytdd-----wfnshgtrcagev~aardn-- 224 (629)
T KOG3526|consen 162 NVTTAIMDDGVDYMHPDLKSN--------Y--NAEASYDFSSNDPFPYPRYTDD-----WFNSHGTRCAGEVVAARDN-- 224 (629)
T ss_pred CceEEeecCCchhcCcchhcc--------c--CceeecccccCCCCCCCcccch-----hhhccCccccceeeeeccC--
Confidence 999999999999999999753 1 2566778887775544333211 1478999999988876543
Q ss_pred ccccccCcceeecccCceEEEEEeeCCCCCCHHHHHHHHHHHHh-CCCeEEEeccCCCCCCCccccHH---HHHHHHHH-
Q 040462 214 SFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIA-DGVDIITVSLGGNIPVDFIKDAI---AIGAFHAM- 288 (726)
Q Consensus 214 ~~~G~~~G~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~-~gvdVIn~S~G~~~~~~~~~~~~---~~a~~~a~- 288 (726)
+..| .|||.+.++..+|+++. .+..|+++|-..--+ ..++|.+-|||........+.|- -+++-.-+
T Consensus 225 gicg------vgvaydskvagirmldq--pymtdlieansmghep~kihiysaswgptddgktvdgprnatmraiv~gvn 296 (629)
T KOG3526|consen 225 GICG------VGVAYDSKVAGIRMLDQ--PYMTDLIEANSMGHEPSKIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVN 296 (629)
T ss_pred Ccee------eeeeeccccceeeecCC--chhhhhhhhcccCCCCceEEEEecccCcCCCCcccCCchhHHHHHHHHhhh
Confidence 3334 79999999999999975 456666655322211 25789999999873332222222 11222222
Q ss_pred ----hCCcEEEEecCCCCCCCCc---cccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCC
Q 040462 289 ----EKGILTLNSAGNSGSNLGF---VYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKE 361 (726)
Q Consensus 289 ----~~Gi~vV~AAGN~g~~~~~---~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~ 361 (726)
..|-++|.|.|..|.+... -.+.+-|.|++-+.-.+.+
T Consensus 297 egrnglgsiyvwasgdgge~ddcncdgyaasmwtisinsaindg~----------------------------------- 341 (629)
T KOG3526|consen 297 EGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINSAINDGE----------------------------------- 341 (629)
T ss_pred cccCCcccEEEEecCCCCCccccCCccchhheEEEEeehhhcCCc-----------------------------------
Confidence 2467999999988865322 2235667777754322210
Q ss_pred CCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHH
Q 040462 362 VSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYK 441 (726)
Q Consensus 362 ~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~ 441 (726)
...+.+.|..
T Consensus 342 -----nahydescss----------------------------------------------------------------- 351 (629)
T KOG3526|consen 342 -----NAHYDESCSS----------------------------------------------------------------- 351 (629)
T ss_pred -----cccccchhhH-----------------------------------------------------------------
Confidence 0112233321
Q ss_pred hcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeeccccc
Q 040462 442 NSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTS 521 (726)
Q Consensus 442 ~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTS 521 (726)
...+.||+-|.++ +- |+. .+ +..+.....-||||
T Consensus 352 ---------------------tlastfsng~rnp--------et---gva--tt------------dlyg~ct~~hsgts 385 (629)
T KOG3526|consen 352 ---------------------TLASTFSNGGRNP--------ET---GVA--TT------------DLYGRCTRSHSGTS 385 (629)
T ss_pred ---------------------HHHHHhhcCCcCC--------Cc---cee--ee------------ccccceecccCCcc
Confidence 2335677766554 11 111 11 11123556789999
Q ss_pred chhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccc--CCCC--------C--CCCCCCcCCCCccCccccCCCcccccCC
Q 040462 522 MACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWP--MNSS--------K--VNDAEVAFGSGHVNPVKAVNPGLIYETS 589 (726)
Q Consensus 522 mAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~--i~~~--------~--~~~~~~~~G~G~vn~~~A~~~glv~d~~ 589 (726)
.|+|-.||+.||-++++|.++..+++.+-.-|.+. +-+. . +-..+..||+|.+|+.+-+.-..-+...
T Consensus 386 aaapeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf~w~mngvglefnhlfgfgvldagamv~lak~wktv 465 (629)
T KOG3526|consen 386 AAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNGVGLEFNHLFGFGVLDAGAMVMLAKAWKTV 465 (629)
T ss_pred ccCccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceEEEeccccceeeecccccccccHHHHHHHHHHhccC
Confidence 99999999999999999999999999887777753 2221 1 1225668999999998777654444444
Q ss_pred hhhHHHhhhcCCC
Q 040462 590 KQDYIKILCSIGY 602 (726)
Q Consensus 590 ~~dy~~~lc~~~~ 602 (726)
+.. |-|..|.
T Consensus 466 ppr---yhc~ag~ 475 (629)
T KOG3526|consen 466 PPR---YHCTAGL 475 (629)
T ss_pred CCc---eeecccc
Confidence 443 5677664
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.74 E-value=2.6e-17 Score=179.49 Aligned_cols=101 Identities=23% Similarity=0.233 Sum_probs=82.2
Q ss_pred ceeecccCceEEEEEeeCCCCCCHHHHHHHHHHHHhC---CCeEEEeccCCCCCC--CccccHHHHHHHHHHhCCcEEEE
Q 040462 222 TARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIAD---GVDIITVSLGGNIPV--DFIKDAIAIGAFHAMEKGILTLN 296 (726)
Q Consensus 222 ~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~~---gvdVIn~S~G~~~~~--~~~~~~~~~a~~~a~~~Gi~vV~ 296 (726)
.+.||||+|+|+.|++++.. ...++.++.+++++ +++|||+|||..... ..+.+.++.++.+|..+||+||+
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gitvva 158 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVLA 158 (361)
T ss_pred HHHhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 35899999999999998642 45678889999887 999999999987321 12346778888899999999999
Q ss_pred ecCCCCCCCC-----------ccccCCCceEEEeeeccCc
Q 040462 297 SAGNSGSNLG-----------FVYSVAPWLMSVAASTTDR 325 (726)
Q Consensus 297 AAGN~g~~~~-----------~~~~~~p~vitVgA~~~~~ 325 (726)
|+||+|.... .+++..||+++||+++...
T Consensus 159 AsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 159 ASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred eCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 9999997653 3467899999999997764
No 44
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.14 E-value=4.4e-10 Score=103.92 Aligned_cols=116 Identities=40% Similarity=0.605 Sum_probs=92.8
Q ss_pred EEeCCCceEeeeeeccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEe------cchhHHHHhcC
Q 040462 331 VLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSK------FDGYTEVHKVG 404 (726)
Q Consensus 331 ~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~------~~~~~~~~~~G 404 (726)
++||||+.+.|+++++..+ ..+++++..+.. .......|.+..++..+++||||+|++ .++..+++++|
T Consensus 2 i~LGng~~i~G~sl~~~~~--~~~~~~~~~~~~---~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~G 76 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL--KTYPLVYKSANS---GDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAG 76 (126)
T ss_pred EEeCCCCEEEEEEccCCCC--CccceEeccCcC---CCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcC
Confidence 6799999999999997655 467777743321 234457899988888999999999987 25678899999
Q ss_pred ceEEEEEecCCCCcee---eeeeeEEEeehhhHHHHHHHHhcCCCCeEEE
Q 040462 405 AAGSILFNDQYEKVSF---VVSLPAVAVSMENFNSLISYKNSTKKPEAEI 451 (726)
Q Consensus 405 a~g~i~~~~~~~~~~~---~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i 451 (726)
|.|+|++++....... .+.+|++.|+.++++.|++|++++.++++++
T Consensus 77 A~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~i 126 (126)
T cd02120 77 GAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTATI 126 (126)
T ss_pred CcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCcceeC
Confidence 9999999887654322 2689999999999999999999988877653
No 45
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=98.98 E-value=3.6e-09 Score=100.07 Aligned_cols=108 Identities=29% Similarity=0.409 Sum_probs=82.8
Q ss_pred CceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCCCcee----e
Q 040462 351 GKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYEKVSF----V 421 (726)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~~~----~ 421 (726)
....+++|.+. |....+...+++||||||+| .+|..+++++||.|+|++++....... .
T Consensus 25 ~~~~~lv~~g~------------g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~ 92 (143)
T cd02133 25 GKTYELVDAGL------------GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEA 92 (143)
T ss_pred CcEEEEEEccC------------CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCC
Confidence 45678888643 33344455689999999987 578899999999999999887643222 1
Q ss_pred eeeeEEEeehhhHHHHHHHHhcCCCCeEEE-eeeeeecCCCCCcccccCCCCCCC
Q 040462 422 VSLPAVAVSMENFNSLISYKNSTKKPEAEI-LKTEAIKDFDAPVVAPFSSRGPNA 475 (726)
Q Consensus 422 ~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i-~~~~~~~~~~~~~~a~fSs~GP~~ 475 (726)
..+|++.|+.+++..|++|+++ ++++ +..+.. ..+++.++.||||||..
T Consensus 93 ~~iP~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 93 VFIPVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred CeEeEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 4789999999999999999988 5555 444444 56778899999999963
No 46
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.84 E-value=6e-09 Score=88.48 Aligned_cols=78 Identities=32% Similarity=0.390 Sum_probs=56.0
Q ss_pred EEEEEeCCCCCCCCcchhHHHHHHHHhhc----CCCCCCcEEEeecceeeEEEEEeCHHHHHHHHcCCCeEEEEeCceec
Q 040462 34 VYIVYIGSLPKGEYVTSSHHQSILQEVVE----GSSVGDVLVRSYRRSFNGFAAKLTDLERQKLASMEEVVSVFPSRTLQ 109 (726)
Q Consensus 34 ~yiV~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~v~~~~~~~ 109 (726)
+|||.|++..........+.+++.+.+.+ ......++.+.|+..||||+++++++++++|+++|+|++|+||..++
T Consensus 1 ~YIV~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~ 80 (82)
T PF05922_consen 1 RYIVVFKDDASAASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVS 80 (82)
T ss_dssp EEEEEE-TTSTHHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEE
T ss_pred CEEEEECCCCCcchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEe
Confidence 69999999866333344555555432211 13456799999999999999999999999999999999999999887
Q ss_pred cc
Q 040462 110 FH 111 (726)
Q Consensus 110 ~~ 111 (726)
++
T Consensus 81 l~ 82 (82)
T PF05922_consen 81 LH 82 (82)
T ss_dssp E-
T ss_pred cC
Confidence 64
No 47
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=1e-06 Score=104.76 Aligned_cols=163 Identities=17% Similarity=0.131 Sum_probs=89.1
Q ss_pred hhccCCCCCCCcEEEEEc-ccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhh
Q 040462 124 SITRKHSVESNIIIGVID-SGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTA 202 (726)
Q Consensus 124 ~~w~~~~~G~gV~VgVID-tGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVA 202 (726)
.+++.+.+|+|++||||| -|-.+...++.- -|+. .|-.-..+.++. + ..-..+|+||=+
T Consensus 219 ~l~~~g~tGkG~tIaIid~yG~p~~~~dl~~--------Fd~~---~Gip~~~~~~V~----~-----ig~g~~~~~~g~ 278 (1174)
T COG4934 219 ALYESGATGKGETIAIIDAYGDPYNNQDLYS--------FDQQ---YGIPNPILSRVT----Y-----IGPGIGSGTGGA 278 (1174)
T ss_pred ecccCCCCCCCcEEEEEeccCCcccHHHHHH--------HHHh---hCCCCCCceEEE----E-----eCCCCCCCCCcc
Confidence 466667899999999999 555443333220 0110 010000111111 0 003467777755
Q ss_pred hccccCcCCCCccccccCcceeecccCceEEEEEeeCCCCCCHHHHHHHHHHHHhCCC-eEEEeccCCCC--CCCc--cc
Q 040462 203 STAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIADGV-DIITVSLGGNI--PVDF--IK 277 (726)
Q Consensus 203 giaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~~gv-dVIn~S~G~~~--~~~~--~~ 277 (726)
.=+ -++..-+.-+||+|+|..|-+-. + ....+..|+.+-...-+ -+|-+||+... ...+ .-
T Consensus 279 ~E~-----------sLDVE~s~A~AP~A~I~lvvap~--~-~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~ 344 (1174)
T COG4934 279 EET-----------SLDVEWSHAMAPKANIDLVVAPN--P-LVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYA 344 (1174)
T ss_pred ccc-----------eeehhhhhccCccCceEEEEcCC--C-ceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHH
Confidence 311 11111224589999999987622 1 22222223333222211 33335665431 2222 34
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCCCCCCCc--------cccCCCceEEEee
Q 040462 278 DAIAIGAFHAMEKGILTLNSAGNSGSNLGF--------VYSVAPWLMSVAA 320 (726)
Q Consensus 278 ~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--------~~~~~p~vitVgA 320 (726)
+.++.-...|..+||.+++|+|.+|....+ .++.+|++++||.
T Consensus 345 ~~~d~l~~qasaeGITi~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 345 DLMDLLYEQASAEGITIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred HHHHHHHHHhhccceEEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 556666678889999999999999866542 4568999999998
No 48
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.19 E-value=5.7e-06 Score=75.95 Aligned_cols=80 Identities=18% Similarity=0.207 Sum_probs=65.7
Q ss_pred CCCCCCCCCCCCCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCCCc------e--eeeeeeEEEeehhhHHHH
Q 040462 371 SQACNPGCINSSLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYEKV------S--FVVSLPAVAVSMENFNSL 437 (726)
Q Consensus 371 ~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~------~--~~~~~p~~~i~~~~~~~l 437 (726)
...|.+..+...+++|||+||+| .+|..+++++||.++|++|+..... . ....+|.++|+.++++.|
T Consensus 29 ~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l 108 (122)
T cd04816 29 PAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAAL 108 (122)
T ss_pred ccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHHH
Confidence 47899888877899999999998 5688999999999999998776311 1 224699999999999999
Q ss_pred HHHHhcCCCCeEE
Q 040462 438 ISYKNSTKKPEAE 450 (726)
Q Consensus 438 ~~~~~~~~~~~~~ 450 (726)
++++..+.+.+++
T Consensus 109 ~~~l~~g~~v~~~ 121 (122)
T cd04816 109 RRRLGAGETLELD 121 (122)
T ss_pred HHHHcCCCEEEEe
Confidence 9999887765543
No 49
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.17 E-value=9.5e-06 Score=74.04 Aligned_cols=81 Identities=16% Similarity=0.199 Sum_probs=64.6
Q ss_pred CCCCCCCCCCCCCCCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCCCcee-------eeeeeEEEeehhhHHH
Q 040462 369 FSSQACNPGCINSSLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYEKVSF-------VVSLPAVAVSMENFNS 436 (726)
Q Consensus 369 ~~~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~~~-------~~~~p~~~i~~~~~~~ 436 (726)
.....|.+..++ .+++|||+||+| .+|..+++++||.|+|++++......+ ...+|++.|+.+++..
T Consensus 25 ~~~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~ 103 (118)
T cd04818 25 SNTDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDA 103 (118)
T ss_pred CcccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHH
Confidence 345679887774 459999999987 468889999999999999887642222 2479999999999999
Q ss_pred HHHHHhcCCCCeEE
Q 040462 437 LISYKNSTKKPEAE 450 (726)
Q Consensus 437 l~~~~~~~~~~~~~ 450 (726)
|++|++.+.+.+++
T Consensus 104 l~~~l~~g~~v~v~ 117 (118)
T cd04818 104 LKAALAAGGTVTVT 117 (118)
T ss_pred HHHHHhcCCcEEEe
Confidence 99999987655543
No 50
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.8e-05 Score=87.67 Aligned_cols=157 Identities=15% Similarity=0.149 Sum_probs=95.5
Q ss_pred hhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhh
Q 040462 124 SITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTAS 203 (726)
Q Consensus 124 ~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAg 203 (726)
..|..+++|+++.+++.|.|+...||+..+. +.+. .. +++..++.- ...-.+......|||-|++
T Consensus 24 ~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-~~~~-~s--------~d~~~~~~~-----p~~~~~~~~~~~~g~~Ca~ 88 (431)
T KOG3525|consen 24 NAWCKGYTGTRVSVTILDDGLECSHPDLRNN-YDPL-GS--------YDVNRHDND-----PEPRCDGTNENKHGTRCAG 88 (431)
T ss_pred eccccCCCCCceEEEEeeccccccCcccccc-cCcc-ee--------EeeecCCCC-----cccccCCCCccccCCCCCc
Confidence 7899999999999999999999999999754 1111 11 111101000 0001122235889999999
Q ss_pred ccccCcCCCCccccccCcceeecccCceEEEEEeeCCCCCCHHHHHHHHHHHHh-CCCeEEEeccCCCCCCCcc---ccH
Q 040462 204 TAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIA-DGVDIITVSLGGNIPVDFI---KDA 279 (726)
Q Consensus 204 iaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~-~gvdVIn~S~G~~~~~~~~---~~~ 279 (726)
-.+.......- ..|+++++++..++++.. ...+...+...... .-+++-+.|||........ ...
T Consensus 89 ~~a~~~~~~~C--------~vg~~~~~~~~g~~~l~~---~v~~~~~~~~~~~~~~~~di~scsw~pddd~~t~~~~~~l 157 (431)
T KOG3525|consen 89 CVAARANNLTC--------GVGVAYNATIGGIRMLAG---CVSDAVEAPSLGFGPCHIDIYSCSWGPDDDGKTCDGPGTL 157 (431)
T ss_pred ccccccCCCcC--------CCCcccCccccceeeeee---ecccceecccccCCCCCceeecCcCCcccCCCcCCCCcch
Confidence 99987522111 278999999999998753 11122223222222 2478999999976322111 122
Q ss_pred HHHHHHHH-----HhCCcEEEEecCCCCCCCC
Q 040462 280 IAIGAFHA-----MEKGILTLNSAGNSGSNLG 306 (726)
Q Consensus 280 ~~~a~~~a-----~~~Gi~vV~AAGN~g~~~~ 306 (726)
...+...+ ..+|-+.|++-||.|....
T Consensus 158 ~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d 189 (431)
T KOG3525|consen 158 AREALVYGRGCGRHGKGSIFVWASGNGGTCGD 189 (431)
T ss_pred hhhhhhccccccccCCCCeeEEEecCcccccc
Confidence 23233332 2578899999999886543
No 51
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.05 E-value=2.8e-06 Score=74.98 Aligned_cols=71 Identities=32% Similarity=0.487 Sum_probs=56.5
Q ss_pred CCCCCCCCCCCCCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCC-------CceeeeeeeEEEeehhhHHHHH
Q 040462 371 SQACNPGCINSSLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYE-------KVSFVVSLPAVAVSMENFNSLI 438 (726)
Q Consensus 371 ~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~-------~~~~~~~~p~~~i~~~~~~~l~ 438 (726)
...|.+......+++||||||+| .+|..+++++||.|+|+++.... .......||+++|+.++++.|+
T Consensus 19 ~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~ 98 (101)
T PF02225_consen 19 EGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALL 98 (101)
T ss_dssp CCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHH
T ss_pred cccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhh
Confidence 45677778888999999999988 68899999999999999992211 1122388999999999999999
Q ss_pred HHH
Q 040462 439 SYK 441 (726)
Q Consensus 439 ~~~ 441 (726)
+|+
T Consensus 99 ~~i 101 (101)
T PF02225_consen 99 AYI 101 (101)
T ss_dssp HHH
T ss_pred ccC
Confidence 986
No 52
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=97.97 E-value=2.4e-05 Score=71.99 Aligned_cols=80 Identities=26% Similarity=0.360 Sum_probs=64.0
Q ss_pred CCCCCCCCC--CCCCCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCCCc----e-----eeeeeeEEEeehhh
Q 040462 370 SSQACNPGC--INSSLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYEKV----S-----FVVSLPAVAVSMEN 433 (726)
Q Consensus 370 ~~~~c~~~~--~~~~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~----~-----~~~~~p~~~i~~~~ 433 (726)
....|.++. +...+++||||||++ .+|..+++++||.|+|++++..... . ....+|++.|+.++
T Consensus 29 ~~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~ 108 (126)
T cd00538 29 PLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYAD 108 (126)
T ss_pred ceEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHH
Confidence 345687776 677889999999987 4788999999999999998875321 1 22579999999999
Q ss_pred HHHHHHHHhcCCCCeE
Q 040462 434 FNSLISYKNSTKKPEA 449 (726)
Q Consensus 434 ~~~l~~~~~~~~~~~~ 449 (726)
+..|++|+.++.+.++
T Consensus 109 g~~l~~~~~~~~~v~~ 124 (126)
T cd00538 109 GEALLSLLEAGKTVTV 124 (126)
T ss_pred HHHHHHHHhcCCceEE
Confidence 9999999998665443
No 53
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=97.94 E-value=9.4e-05 Score=67.89 Aligned_cols=78 Identities=22% Similarity=0.280 Sum_probs=61.9
Q ss_pred CCCCCCCCCCCCccceEEEEEe-----cchhHHHHhcCceEEEEEecCC-CCce------eeeeeeEEEeehhhHHHHHH
Q 040462 372 QACNPGCINSSLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQY-EKVS------FVVSLPAVAVSMENFNSLIS 439 (726)
Q Consensus 372 ~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~-~~~~------~~~~~p~~~i~~~~~~~l~~ 439 (726)
..|.+..+ +.+++|||+|++| .+|..+++++||.++|++|+.. .... ....+|.+.|+.++++.|+.
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~ 110 (122)
T cd02130 32 LGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVA 110 (122)
T ss_pred CCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHH
Confidence 46776444 3579999999998 6789999999999999998873 2111 12569999999999999999
Q ss_pred HHhcCCCCeEE
Q 040462 440 YKNSTKKPEAE 450 (726)
Q Consensus 440 ~~~~~~~~~~~ 450 (726)
.+..+.+.+++
T Consensus 111 ~l~~g~~v~~~ 121 (122)
T cd02130 111 ALANGGEVSAN 121 (122)
T ss_pred HHhcCCcEEEe
Confidence 99988776554
No 54
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=97.89 E-value=6.5e-05 Score=70.28 Aligned_cols=82 Identities=9% Similarity=0.092 Sum_probs=66.9
Q ss_pred CCCCCCCCCC--CCCCccceEEEEEe-----cchhHHHHhcCceEEEEEecCC-CCcee------eeeeeEEEeehhhHH
Q 040462 370 SSQACNPGCI--NSSLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQY-EKVSF------VVSLPAVAVSMENFN 435 (726)
Q Consensus 370 ~~~~c~~~~~--~~~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~-~~~~~------~~~~p~~~i~~~~~~ 435 (726)
....|.+... ++.++.|+|+|++| .+|..+++++||.++|++|+.. ..... ...+|.++|+..+|+
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~ 122 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGM 122 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHH
Confidence 4568998776 66789999999998 6889999999999999999886 21111 146899999999999
Q ss_pred HHHHHHhcCCCCeEEE
Q 040462 436 SLISYKNSTKKPEAEI 451 (726)
Q Consensus 436 ~l~~~~~~~~~~~~~i 451 (726)
.|++++..+.+.+++|
T Consensus 123 ~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 123 EILELLERGISVTMVI 138 (138)
T ss_pred HHHHHHHcCCcEEEeC
Confidence 9999999887766543
No 55
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.80 E-value=0.00012 Score=66.57 Aligned_cols=80 Identities=20% Similarity=0.180 Sum_probs=64.7
Q ss_pred CCCCCCCCCCCCCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCCC-c----------eeeeeeeEEEeehhhH
Q 040462 371 SQACNPGCINSSLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYEK-V----------SFVVSLPAVAVSMENF 434 (726)
Q Consensus 371 ~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~-~----------~~~~~~p~~~i~~~~~ 434 (726)
...|.+.. ...+++|||+|++| .+|..+++++||.++|++|+.... . .....||.++|+..++
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELR-NIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCC-CccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 46798643 35679999999998 788999999999999999976531 1 1125799999999999
Q ss_pred HHHHHHHhcCCCCeEEE
Q 040462 435 NSLISYKNSTKKPEAEI 451 (726)
Q Consensus 435 ~~l~~~~~~~~~~~~~i 451 (726)
+.|.+.+..+..+++.|
T Consensus 100 ~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 100 YMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHcCCceEEee
Confidence 99999999988877655
No 56
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=97.72 E-value=0.00012 Score=67.52 Aligned_cols=78 Identities=23% Similarity=0.307 Sum_probs=61.7
Q ss_pred CCCCCCCCCCCCCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCCC------------ce---eeeeeeEEEee
Q 040462 371 SQACNPGCINSSLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYEK------------VS---FVVSLPAVAVS 430 (726)
Q Consensus 371 ~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~------------~~---~~~~~p~~~i~ 430 (726)
...|.+... +.+++|||+|++| .+|..+++++||.++|++|+.... .. ....||+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 467876543 5579999999998 688999999999999999866531 01 13578999999
Q ss_pred hhhHHHHHHHHhcCCCCeE
Q 040462 431 MENFNSLISYKNSTKKPEA 449 (726)
Q Consensus 431 ~~~~~~l~~~~~~~~~~~~ 449 (726)
..+|+.|+++++.+...++
T Consensus 106 ~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred HHHHHHHHHHHHhCCceEE
Confidence 9999999999987765544
No 57
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.72 E-value=0.00012 Score=66.37 Aligned_cols=76 Identities=17% Similarity=0.266 Sum_probs=63.0
Q ss_pred CCCCCCCCCCCCCCCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCCC----c-e--eeeeeeEEEeehhhHHH
Q 040462 369 FSSQACNPGCINSSLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYEK----V-S--FVVSLPAVAVSMENFNS 436 (726)
Q Consensus 369 ~~~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~----~-~--~~~~~p~~~i~~~~~~~ 436 (726)
+....|.+..+.+.+++|||+|++| .+|..+++++||.++|++|+.... . . ....||+++|+.++++.
T Consensus 28 ~~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~ 107 (120)
T cd02129 28 TSSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLD 107 (120)
T ss_pred CCcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHH
Confidence 3446799888888889999999998 788999999999999999987631 1 1 23678999999999999
Q ss_pred HHHHHhcC
Q 040462 437 LISYKNST 444 (726)
Q Consensus 437 l~~~~~~~ 444 (726)
|.+.+...
T Consensus 108 i~~~l~~~ 115 (120)
T cd02129 108 IQQTFGDS 115 (120)
T ss_pred HHHHhccC
Confidence 99888743
No 58
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.70 E-value=0.00036 Score=64.56 Aligned_cols=81 Identities=17% Similarity=0.178 Sum_probs=62.3
Q ss_pred CCCCCCCCCCCCCCCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCCCc----eeeeeeeEEEeehhhHHHHHH
Q 040462 369 FSSQACNPGCINSSLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYEKV----SFVVSLPAVAVSMENFNSLIS 439 (726)
Q Consensus 369 ~~~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~----~~~~~~p~~~i~~~~~~~l~~ 439 (726)
.....|.+...+..+++|||+|++| .+|..+++++||.++|++|+..... .....+|.+.+ .++|+.|++
T Consensus 39 ~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~ 117 (129)
T cd02124 39 VADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWID 117 (129)
T ss_pred CCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHH
Confidence 3457899876666689999999998 6889999999999999998775322 11234566666 999999999
Q ss_pred HHhcCCCCeEE
Q 040462 440 YKNSTKKPEAE 450 (726)
Q Consensus 440 ~~~~~~~~~~~ 450 (726)
.+..+...+++
T Consensus 118 ~l~~G~~vtv~ 128 (129)
T cd02124 118 ALAAGSNVTVD 128 (129)
T ss_pred HHhcCCeEEEe
Confidence 99877655543
No 59
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.63 E-value=0.00038 Score=65.36 Aligned_cols=76 Identities=24% Similarity=0.346 Sum_probs=61.3
Q ss_pred CCCCCCCCCCCCCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCCCcee---------eeeeeEEEeehhhHHH
Q 040462 371 SQACNPGCINSSLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYEKVSF---------VVSLPAVAVSMENFNS 436 (726)
Q Consensus 371 ~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~~~---------~~~~p~~~i~~~~~~~ 436 (726)
.+.|.+.. .+++|||+|++| .+|..+++++||.++|++|+....... ...||+++|+..+|+.
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 46788654 378999999999 688999999999999999876532111 2579999999999999
Q ss_pred HHHHHhcCCCCeE
Q 040462 437 LISYKNSTKKPEA 449 (726)
Q Consensus 437 l~~~~~~~~~~~~ 449 (726)
|++++..+...++
T Consensus 125 L~~~l~~g~~Vtv 137 (139)
T cd02132 125 LNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHcCCcEEE
Confidence 9999988765443
No 60
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=97.51 E-value=0.00042 Score=62.91 Aligned_cols=74 Identities=20% Similarity=0.318 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCCCCCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCCC-c--------eeeeeeeEEEeehhhH
Q 040462 369 FSSQACNPGCINSSLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYEK-V--------SFVVSLPAVAVSMENF 434 (726)
Q Consensus 369 ~~~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~-~--------~~~~~~p~~~i~~~~~ 434 (726)
.....|.+. +..+++|||+|++| .+|..+++++||.++|++|+.... . .....+|+++|+.+++
T Consensus 25 ~p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g 102 (117)
T cd04813 25 SPTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSY 102 (117)
T ss_pred CCCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHH
Confidence 345789765 56889999999988 688999999999999999876532 1 1125799999999999
Q ss_pred HHHHHHHhcC
Q 040462 435 NSLISYKNST 444 (726)
Q Consensus 435 ~~l~~~~~~~ 444 (726)
++|..++..+
T Consensus 103 ~~L~~l~~~~ 112 (117)
T cd04813 103 HLLSSLLPKS 112 (117)
T ss_pred HHHHHhcccc
Confidence 9998887643
No 61
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=97.40 E-value=0.00063 Score=62.73 Aligned_cols=80 Identities=10% Similarity=0.064 Sum_probs=61.7
Q ss_pred CCCCCCCCCC--CC----CccceEEEEEe-----cchhHHHHhcCceEEEEEecCCCCc--------------eeeeeee
Q 040462 371 SQACNPGCIN--SS----LVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYEKV--------------SFVVSLP 425 (726)
Q Consensus 371 ~~~c~~~~~~--~~----~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~--------------~~~~~~p 425 (726)
.+.|.+.... +. ...++|+|++| .+|..+++++||.++|++|+..... .....||
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP 101 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIP 101 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEe
Confidence 4578765442 22 37889999999 6899999999999999999865421 1124699
Q ss_pred EEEeehhhHHHHHHHHhcCCCCeEE
Q 040462 426 AVAVSMENFNSLISYKNSTKKPEAE 450 (726)
Q Consensus 426 ~~~i~~~~~~~l~~~~~~~~~~~~~ 450 (726)
+++|+..+++.|+..+..+...+++
T Consensus 102 ~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 102 SALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred EEEECHHHHHHHHHHHhcCCeEEEe
Confidence 9999999999999999987765543
No 62
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.38 E-value=0.00064 Score=63.40 Aligned_cols=65 Identities=18% Similarity=0.331 Sum_probs=52.2
Q ss_pred CCCCccceEEEEEe----------cchhHHHHhcCceEEEEEecC--CCCc-ee------eeeeeEEEeehhhHHHHHHH
Q 040462 380 NSSLVKGKIVMCSK----------FDGYTEVHKVGAAGSILFNDQ--YEKV-SF------VVSLPAVAVSMENFNSLISY 440 (726)
Q Consensus 380 ~~~~~~gkiv~~~~----------~~~~~~~~~~Ga~g~i~~~~~--~~~~-~~------~~~~p~~~i~~~~~~~l~~~ 440 (726)
.+.+++|||+|++| .+|.++++++||.++|++|+. .... .. ...||++.|+.++++.|...
T Consensus 51 ~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~~ 130 (139)
T cd04817 51 ICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLAA 130 (139)
T ss_pred cCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHHH
Confidence 34578999999888 256889999999999999997 3211 11 25899999999999999998
Q ss_pred HhcC
Q 040462 441 KNST 444 (726)
Q Consensus 441 ~~~~ 444 (726)
+..+
T Consensus 131 l~~~ 134 (139)
T cd04817 131 LGQS 134 (139)
T ss_pred hcCC
Confidence 8644
No 63
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=97.27 E-value=0.0012 Score=63.11 Aligned_cols=76 Identities=20% Similarity=0.258 Sum_probs=62.0
Q ss_pred CCCCCCCCCCC---CCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCCCce---------eeeeeeEEEeehhh
Q 040462 371 SQACNPGCINS---SLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYEKVS---------FVVSLPAVAVSMEN 433 (726)
Q Consensus 371 ~~~c~~~~~~~---~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~~---------~~~~~p~~~i~~~~ 433 (726)
...|.+....+ ..+.|+|+|++| .+|..+++++||.++|++|+...... ....||+++|+..+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 45788765533 789999999998 78999999999999999998653211 13589999999999
Q ss_pred HHHHHHHHhcCCC
Q 040462 434 FNSLISYKNSTKK 446 (726)
Q Consensus 434 ~~~l~~~~~~~~~ 446 (726)
++.|..++.....
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999987654
No 64
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=97.25 E-value=0.0029 Score=58.45 Aligned_cols=84 Identities=20% Similarity=0.163 Sum_probs=61.6
Q ss_pred CceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEe-------cchhHHHHhcCceEEEEEecCCCCce----
Q 040462 351 GKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSK-------FDGYTEVHKVGAAGSILFNDQYEKVS---- 419 (726)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~-------~~~~~~~~~~Ga~g~i~~~~~~~~~~---- 419 (726)
....++++.+... +..+...+++||||++++ .+|..++.++||.|+|++|+......
T Consensus 22 ~~~~~lV~~g~G~------------~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~ 89 (127)
T cd04819 22 EAKGEPVDAGYGL------------PKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGD 89 (127)
T ss_pred CeeEEEEEeCCCC------------HHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCccccc
Confidence 3467788765331 112234579999999988 24688999999999999987654321
Q ss_pred ------eeeeeeEEEeehhhHHHHHHHHhcCCC
Q 040462 420 ------FVVSLPAVAVSMENFNSLISYKNSTKK 446 (726)
Q Consensus 420 ------~~~~~p~~~i~~~~~~~l~~~~~~~~~ 446 (726)
....+|++.|+.++++.|.+.++.+..
T Consensus 90 ~~~~~~~~~~IP~v~Is~edg~~L~~~l~~g~~ 122 (127)
T cd04819 90 EGTEDGPPSPIPAASVSGEDGLRLARVAERNDT 122 (127)
T ss_pred ccccCCCCCCCCEEEEeHHHHHHHHHHHhcCCc
Confidence 124699999999999999999987543
No 65
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=97.14 E-value=0.0049 Score=55.56 Aligned_cols=74 Identities=19% Similarity=0.213 Sum_probs=51.1
Q ss_pred eEEEEEEEEeccCCCeeEEEEEE-ee---c---ce------------------eEEEEec-ceeeEEEEEEecc-C-CCC
Q 040462 645 TVNFPRIVTNVGLANSTYRAKFF-QK---F---TI------------------ISVKVVP-EKKPFVVTVTGKG-L-PES 696 (726)
Q Consensus 645 ~~~~~rtvtnvg~~~~ty~~~v~-~~---p---~g------------------~~v~v~p-~~~~~~vt~~~~~-~-~~~ 696 (726)
..+++.|++|.|+.+.+|+++.. .. . .| -+|+|.| ++++++|+++... . ...
T Consensus 9 ~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p~~~~~~~ 88 (112)
T PF06280_consen 9 KFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPPSGLDASN 88 (112)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--GGGHHTT
T ss_pred ceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEehhcCCccc
Confidence 58899999999999999999987 21 0 11 1566666 9999999998843 1 033
Q ss_pred CCeEEEEEEEEc-CCe-EEEeeEE
Q 040462 697 GTVVPATLVWSD-GIH-SVRSPIV 718 (726)
Q Consensus 697 ~~~~~G~~~~~~-~~~-~vr~p~~ 718 (726)
..+++|+|.+++ ..+ .+++|++
T Consensus 89 ~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 89 GPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp -EEEEEEEEEESSTTSEEEEEEEE
T ss_pred CCEEEEEEEEEcCCCCEEEEeeeC
Confidence 679999999995 344 8999985
No 66
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=95.87 E-value=0.023 Score=53.00 Aligned_cols=71 Identities=27% Similarity=0.297 Sum_probs=53.5
Q ss_pred CCCCccceEEEEEecch------------------hHHHHhcCceEEEEEecCCC-------Cc-ee---eeeeeEEEee
Q 040462 380 NSSLVKGKIVMCSKFDG------------------YTEVHKVGAAGSILFNDQYE-------KV-SF---VVSLPAVAVS 430 (726)
Q Consensus 380 ~~~~~~gkiv~~~~~~~------------------~~~~~~~Ga~g~i~~~~~~~-------~~-~~---~~~~p~~~i~ 430 (726)
...+++||||++++... ...+.++||.++|++|.... +. .. ...+|.+.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 35689999999977222 58899999999999985321 11 11 1459999999
Q ss_pred hhhHHHHHHHHhcCCCCeEE
Q 040462 431 MENFNSLISYKNSTKKPEAE 450 (726)
Q Consensus 431 ~~~~~~l~~~~~~~~~~~~~ 450 (726)
.+++..|...++.+...+++
T Consensus 114 ~ed~~~L~r~l~~g~~v~~~ 133 (134)
T cd04815 114 VEDADMLERLAARGKPIRVN 133 (134)
T ss_pred hhcHHHHHHHHhCCCCeEEe
Confidence 99999999999887655543
No 67
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=94.29 E-value=0.065 Score=52.35 Aligned_cols=64 Identities=20% Similarity=0.317 Sum_probs=50.0
Q ss_pred CCCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCCCce------------------------------------
Q 040462 381 SSLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYEKVS------------------------------------ 419 (726)
Q Consensus 381 ~~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~~------------------------------------ 419 (726)
..+++|||+|+.+ .+|..+|+++||+|+|++++......
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 4578999999987 67899999999999999988421100
Q ss_pred -eeeeeeEEEeehhhHHHHHHHHhcC
Q 040462 420 -FVVSLPAVAVSMENFNSLISYKNST 444 (726)
Q Consensus 420 -~~~~~p~~~i~~~~~~~l~~~~~~~ 444 (726)
..-.||++-|+..+++.|++.+.-.
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G~ 156 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGGP 156 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCCC
Confidence 0024889999999999999988643
No 68
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=93.97 E-value=0.26 Score=46.80 Aligned_cols=82 Identities=21% Similarity=0.180 Sum_probs=55.0
Q ss_pred eeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEec-----------------------chhHHHHhcCceEEE
Q 040462 353 KFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKF-----------------------DGYTEVHKVGAAGSI 409 (726)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~-----------------------~~~~~~~~~Ga~g~i 409 (726)
.-++||.+... ....|....+...+++|||||+.+. .|..++.+.||.|+|
T Consensus 21 tg~lVfvGyGi------~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVI 94 (151)
T cd04822 21 TAPVVFAGYGI------TAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVI 94 (151)
T ss_pred eEeEEEecCCc------CccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEE
Confidence 34666654321 2345665666677899999999642 478899999999999
Q ss_pred EEecCCCCceeeeeee------EEEeehhhHHHHHHH
Q 040462 410 LFNDQYEKVSFVVSLP------AVAVSMENFNSLISY 440 (726)
Q Consensus 410 ~~~~~~~~~~~~~~~p------~~~i~~~~~~~l~~~ 440 (726)
++++..........+| .++++....+.++..
T Consensus 95 v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (151)
T cd04822 95 VVNGPNSHSGDADRLPRFGGTAPQRVDIAAADPWFTA 131 (151)
T ss_pred EEeCCcccCcccccccccCccceEEechHHHHHHhhh
Confidence 9998765433222222 566777777776654
No 69
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=92.15 E-value=0.35 Score=45.08 Aligned_cols=58 Identities=24% Similarity=0.148 Sum_probs=42.8
Q ss_pred eeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEe-----------------cchhHHHHhcCceEEEEEecCC
Q 040462 353 KFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSK-----------------FDGYTEVHKVGAAGSILFNDQY 415 (726)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~-----------------~~~~~~~~~~Ga~g~i~~~~~~ 415 (726)
.-+++|.+... ....|....+...+++|||||+.+ ..|.+++.+.||.|+|++++..
T Consensus 23 ~gelVfvGyG~------~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 23 EAPLVFVGYGL------VAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred eEeEEEecCCc------CccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 45666654321 234566666667899999999986 1478999999999999999765
Q ss_pred C
Q 040462 416 E 416 (726)
Q Consensus 416 ~ 416 (726)
.
T Consensus 97 ~ 97 (137)
T cd04820 97 S 97 (137)
T ss_pred c
Confidence 3
No 70
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=91.39 E-value=0.58 Score=43.92 Aligned_cols=58 Identities=26% Similarity=0.248 Sum_probs=43.4
Q ss_pred ceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEe-----------------------cchhHHHHhcCceEE
Q 040462 352 KKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSK-----------------------FDGYTEVHKVGAAGS 408 (726)
Q Consensus 352 ~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~-----------------------~~~~~~~~~~Ga~g~ 408 (726)
...++++.+..- ....|....+...+++||||++.+ ..|...+.+.||.|+
T Consensus 20 ~~aelVfvGyGi------~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gv 93 (142)
T cd04814 20 KDAPLVFVGYGI------KAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGV 93 (142)
T ss_pred cceeeEEecCCc------CCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEE
Confidence 456777765321 124577677777899999999854 247889999999999
Q ss_pred EEEecCC
Q 040462 409 ILFNDQY 415 (726)
Q Consensus 409 i~~~~~~ 415 (726)
|++++..
T Consensus 94 Iii~~~~ 100 (142)
T cd04814 94 LIVHELA 100 (142)
T ss_pred EEEeCCC
Confidence 9999865
No 71
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=87.34 E-value=0.62 Score=43.84 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=30.9
Q ss_pred CCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCC
Q 040462 382 SLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYE 416 (726)
Q Consensus 382 ~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~ 416 (726)
-+++|||+++.. ..|.+++++.||+|+|++.+...
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~d 76 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPCD 76 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChhh
Confidence 579999999985 77899999999999999998653
No 72
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=86.72 E-value=2 Score=47.40 Aligned_cols=71 Identities=18% Similarity=0.287 Sum_probs=57.4
Q ss_pred CCCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCCC---------ceeeeeeeEEEeehhhHHHHHHHHhcCCC
Q 040462 381 SSLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYEK---------VSFVVSLPAVAVSMENFNSLISYKNSTKK 446 (726)
Q Consensus 381 ~~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~---------~~~~~~~p~~~i~~~~~~~l~~~~~~~~~ 446 (726)
..+.++|+++..| .+|...++++||.++++.|+.... ......||+++|++++++.+.....++.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 4578999999988 789999999999999999984321 12237899999999999999987777776
Q ss_pred CeEEE
Q 040462 447 PEAEI 451 (726)
Q Consensus 447 ~~~~i 451 (726)
.++.+
T Consensus 171 V~~~l 175 (541)
T KOG2442|consen 171 VELAL 175 (541)
T ss_pred EEEEE
Confidence 66655
No 73
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=85.89 E-value=2.6 Score=35.01 Aligned_cols=47 Identities=28% Similarity=0.188 Sum_probs=29.2
Q ss_pred eEEEEEEEEeccCCC-eeEEEEEEeecceeEEEEec---------ceeeEEEEEEecc
Q 040462 645 TVNFPRIVTNVGLAN-STYRAKFFQKFTIISVKVVP---------EKKPFVVTVTGKG 692 (726)
Q Consensus 645 ~~~~~rtvtnvg~~~-~ty~~~v~~~p~g~~v~v~p---------~~~~~~vt~~~~~ 692 (726)
..+++.+|+|.|..+ ...++++.. |.|-++.+.| ++.+++++|+...
T Consensus 6 ~~~~~~tv~N~g~~~~~~v~~~l~~-P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~ 62 (78)
T PF10633_consen 6 TVTVTLTVTNTGTAPLTNVSLSLSL-PEGWTVSASPASVPSLPPGESVTVTFTVTVPA 62 (78)
T ss_dssp EEEEEEEEE--SSS-BSS-EEEEE---TTSE---EEEEE--B-TTSEEEEEEEEEE-T
T ss_pred EEEEEEEEEECCCCceeeEEEEEeC-CCCccccCCccccccCCCCCEEEEEEEEECCC
Confidence 788999999999754 458888888 9998766655 7777777777654
No 74
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=84.87 E-value=18 Score=31.37 Aligned_cols=72 Identities=18% Similarity=0.084 Sum_probs=50.3
Q ss_pred eEEEEEEEEeccCCCeeEEEEEEeecceeEEEEec--------ceeeEEEEEEeccCCCCCCeEEEEEEEEcCCeEEEee
Q 040462 645 TVNFPRIVTNVGLANSTYRAKFFQKFTIISVKVVP--------EKKPFVVTVTGKGLPESGTVVPATLVWSDGIHSVRSP 716 (726)
Q Consensus 645 ~~~~~rtvtnvg~~~~ty~~~v~~~p~g~~v~v~p--------~~~~~~vt~~~~~~~~~~~~~~G~~~~~~~~~~vr~p 716 (726)
..+.+.+++|.|..+..|++.... ...-.++|.| ++.+++|+|.... . .....+.|...-....+.+|
T Consensus 21 ~~~~~v~l~N~s~~p~~f~v~~~~-~~~~~~~v~~~~g~l~PG~~~~~~V~~~~~~--~-~g~~~~~l~i~~e~~~~~i~ 96 (102)
T PF14874_consen 21 TYSRTVTLTNTSSIPARFRVRQPE-SLSSFFSVEPPSGFLAPGESVELEVTFSPTK--P-LGDYEGSLVITTEGGSFEIP 96 (102)
T ss_pred EEEEEEEEEECCCCCEEEEEEeCC-cCCCCEEEECCCCEECCCCEEEEEEEEEeCC--C-CceEEEEEEEEECCeEEEEE
Confidence 566677899999999999987643 2334455555 8888888888533 2 23467888777555678888
Q ss_pred EEEE
Q 040462 717 IVVH 720 (726)
Q Consensus 717 ~~~~ 720 (726)
+-+.
T Consensus 97 v~a~ 100 (102)
T PF14874_consen 97 VKAE 100 (102)
T ss_pred EEEE
Confidence 7664
No 75
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=81.72 E-value=1.7 Score=44.06 Aligned_cols=36 Identities=31% Similarity=0.376 Sum_probs=31.0
Q ss_pred CCCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCC
Q 040462 381 SSLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYE 416 (726)
Q Consensus 381 ~~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~ 416 (726)
..+++|||||+.+ .+|..+++++||+|+|++++...
T Consensus 67 gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d 107 (220)
T cd02121 67 GIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPAD 107 (220)
T ss_pred CCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCchh
Confidence 4589999999976 46899999999999999998653
No 76
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=79.19 E-value=1.3 Score=52.35 Aligned_cols=24 Identities=17% Similarity=0.412 Sum_probs=21.9
Q ss_pred CCCCCCcEEEEEcccCCCCCCCCC
Q 040462 129 HSVESNIIIGVIDSGIWPESESFS 152 (726)
Q Consensus 129 ~~~G~gV~VgVIDtGid~~Hp~f~ 152 (726)
.+.|+||+|||+|||||+.-|-+.
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCce
Confidence 589999999999999999988775
No 77
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=68.73 E-value=93 Score=28.33 Aligned_cols=62 Identities=15% Similarity=0.086 Sum_probs=45.7
Q ss_pred eEEEEEEEEeccCCCeeEEEEEEee---ccee--------------------------EEEEec-ceeeEEEEEEeccCC
Q 040462 645 TVNFPRIVTNVGLANSTYRAKFFQK---FTII--------------------------SVKVVP-EKKPFVVTVTGKGLP 694 (726)
Q Consensus 645 ~~~~~rtvtnvg~~~~ty~~~v~~~---p~g~--------------------------~v~v~p-~~~~~~vt~~~~~~~ 694 (726)
..+++.+|+|.++...+|.+.+... ..|+ .|+|.| |++.++++++....
T Consensus 28 ~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl~~~~sk~V~~~i~~P~~- 106 (121)
T PF06030_consen 28 KQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTLPPNESKTVTFTIKMPKK- 106 (121)
T ss_pred EEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEECCCCEEEEEEEEEcCCC-
Confidence 7889999999999999999887532 2331 488888 88888888877543
Q ss_pred CCCCeEEEEEEEE
Q 040462 695 ESGTVVPATLVWS 707 (726)
Q Consensus 695 ~~~~~~~G~~~~~ 707 (726)
.-...+-|.|.++
T Consensus 107 ~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 107 AFDGIILGGIYFS 119 (121)
T ss_pred CcCCEEEeeEEEE
Confidence 3455677777765
No 78
>PF15284 PAGK: Phage-encoded virulence factor
Probab=66.26 E-value=5.7 Score=31.08 Aligned_cols=20 Identities=15% Similarity=0.026 Sum_probs=13.2
Q ss_pred CCcchhhHHHHHHHHHHHHH
Q 040462 1 MAKINGFLLFQCLSFIIFFN 20 (726)
Q Consensus 1 M~~~~~~~~~~~~~~~~~~~ 20 (726)
|||++.+++.+++.++...+
T Consensus 1 Mkk~ksifL~l~~~LsA~~F 20 (61)
T PF15284_consen 1 MKKFKSIFLALVFILSAAGF 20 (61)
T ss_pred ChHHHHHHHHHHHHHHHhhh
Confidence 89887777776665543333
No 79
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=61.80 E-value=13 Score=35.57 Aligned_cols=37 Identities=30% Similarity=0.380 Sum_probs=29.8
Q ss_pred CCCCCccceEEEEEe------------------------cchhHHHHhcCceEEEEEecCC
Q 040462 379 INSSLVKGKIVMCSK------------------------FDGYTEVHKVGAAGSILFNDQY 415 (726)
Q Consensus 379 ~~~~~~~gkiv~~~~------------------------~~~~~~~~~~Ga~g~i~~~~~~ 415 (726)
+...|++||||++.. ..|...+.+.||.|+|+..+..
T Consensus 43 y~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~ 103 (157)
T cd04821 43 YKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE 103 (157)
T ss_pred ccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence 345689999999874 1278899999999999997653
No 80
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=56.65 E-value=68 Score=28.76 Aligned_cols=48 Identities=21% Similarity=0.130 Sum_probs=32.5
Q ss_pred eEEEEEEEEeccCCCeeEEEEEEeecceeEE-------EEec-ceeeEEEEEEeccC
Q 040462 645 TVNFPRIVTNVGLANSTYRAKFFQKFTIISV-------KVVP-EKKPFVVTVTGKGL 693 (726)
Q Consensus 645 ~~~~~rtvtnvg~~~~ty~~~v~~~p~g~~v-------~v~p-~~~~~~vt~~~~~~ 693 (726)
.-.++..++|....+.+|+++++. ++|+++ +|.| +...+.|.|+....
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g-~~~~~l~~~~~~i~v~~g~~~~~~v~v~~p~~ 87 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEG-LPGAELQGPENTITVPPGETREVPVFVTAPPD 87 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES--SS-EE-ES--EEEE-TT-EEEEEEEEEE-GG
T ss_pred EEEEEEEEEECCCCCEEEEEEEec-CCCeEEECCCcceEECCCCEEEEEEEEEECHH
Confidence 455677999999999999999998 878776 3333 88888888887653
No 81
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=55.81 E-value=9.3 Score=33.26 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=10.0
Q ss_pred CCcchhhHHHHHHHHHHHHHhhh
Q 040462 1 MAKINGFLLFQCLSFIIFFNMTS 23 (726)
Q Consensus 1 M~~~~~~~~~~~~~~~~~~~~~~ 23 (726)
|. +|.+++|.|+|++++++++
T Consensus 1 Ma--SK~~llL~l~LA~lLlisS 21 (95)
T PF07172_consen 1 MA--SKAFLLLGLLLAALLLISS 21 (95)
T ss_pred Cc--hhHHHHHHHHHHHHHHHHh
Confidence 66 4455555444444444443
No 82
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.55 E-value=35 Score=36.91 Aligned_cols=73 Identities=23% Similarity=0.257 Sum_probs=54.2
Q ss_pred CCCCCCCC---CCCCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCCCc-------eeeeeeeEEEeehhhHHH
Q 040462 372 QACNPGCI---NSSLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYEKV-------SFVVSLPAVAVSMENFNS 436 (726)
Q Consensus 372 ~~c~~~~~---~~~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~-------~~~~~~p~~~i~~~~~~~ 436 (726)
+.|.+-.. ........++++.| .+|..+++++|..++|++|+..... .....++.++++...++.
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~ 142 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGEL 142 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHH
Confidence 45665222 23455667888877 7889999999999999999766542 223778999999999999
Q ss_pred HHHHHhcC
Q 040462 437 LISYKNST 444 (726)
Q Consensus 437 l~~~~~~~ 444 (726)
|.+|....
T Consensus 143 l~~~~~~~ 150 (348)
T KOG4628|consen 143 LSSYAGRT 150 (348)
T ss_pred HHHhhccc
Confidence 99886544
No 83
>COG1470 Predicted membrane protein [Function unknown]
Probab=54.66 E-value=1.5e+02 Score=33.32 Aligned_cols=55 Identities=25% Similarity=0.234 Sum_probs=43.4
Q ss_pred eEEEEEEEEeccCCCeeEEEEEEeeccee------------EEEEec-ceeeEEEEEEeccCCCCCCe
Q 040462 645 TVNFPRIVTNVGLANSTYRAKFFQKFTII------------SVKVVP-EKKPFVVTVTGKGLPESGTV 699 (726)
Q Consensus 645 ~~~~~rtvtnvg~~~~ty~~~v~~~p~g~------------~v~v~p-~~~~~~vt~~~~~~~~~~~~ 699 (726)
+..++.++.|.|..+..|..++...|+|. +|++.| |++.++|.|........+.|
T Consensus 285 t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps~na~pG~Y 352 (513)
T COG1470 285 TASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPSLNATPGTY 352 (513)
T ss_pred ceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEecCCCCCCCce
Confidence 67899999999999999999999438873 777888 88999888887543234444
No 84
>COG1470 Predicted membrane protein [Function unknown]
Probab=53.51 E-value=51 Score=36.79 Aligned_cols=54 Identities=19% Similarity=0.068 Sum_probs=43.6
Q ss_pred eEEEEEEEEeccCCCee-EEEEEEeecceeEEEEec---------ceeeEEEEEEeccCCCCCCe
Q 040462 645 TVNFPRIVTNVGLANST-YRAKFFQKFTIISVKVVP---------EKKPFVVTVTGKGLPESGTV 699 (726)
Q Consensus 645 ~~~~~rtvtnvg~~~~t-y~~~v~~~p~g~~v~v~p---------~~~~~~vt~~~~~~~~~~~~ 699 (726)
..++...+.|.|+.+-| -++++.. |.|-++.|.| +.+++.+|+++...+.+++|
T Consensus 398 e~~i~i~I~NsGna~LtdIkl~v~~-PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY 461 (513)
T COG1470 398 EKTIRISIENSGNAPLTDIKLTVNG-PQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDY 461 (513)
T ss_pred cceEEEEEEecCCCccceeeEEecC-CccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcE
Confidence 67788899999987655 8899999 9999999998 88888888888654345554
No 85
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=35.20 E-value=36 Score=24.49 Aligned_cols=24 Identities=13% Similarity=0.320 Sum_probs=18.9
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhcc
Q 040462 531 AAYVKSFHPDWSPSAIRSAIMTTA 554 (726)
Q Consensus 531 aALl~~~~P~~sp~~Ik~~L~~TA 554 (726)
+--|++.+|+|++..|+..|...-
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcC
Confidence 345789999999999999997643
No 86
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=33.02 E-value=1.2e+02 Score=26.44 Aligned_cols=41 Identities=20% Similarity=0.148 Sum_probs=23.6
Q ss_pred eEEEEEEEEeccCCCee----EEE-----------------EEEeecceeEEEEec-ceeeEEE
Q 040462 645 TVNFPRIVTNVGLANST----YRA-----------------KFFQKFTIISVKVVP-EKKPFVV 686 (726)
Q Consensus 645 ~~~~~rtvtnvg~~~~t----y~~-----------------~v~~~p~g~~v~v~p-~~~~~~v 686 (726)
..+++.+|+|.|+.+-. |+. ...- |.|.+|..+| +++++++
T Consensus 18 r~~~~l~V~N~GDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdI-PaGTavRFEPG~~k~V~L 80 (100)
T PF00699_consen 18 RERITLEVTNTGDRPIQVGSHYHFFEVNPALEFDREAAYGMRLDI-PAGTAVRFEPGDTKEVEL 80 (100)
T ss_dssp SEEEEEEEEE-SSS-EEEETTS-GGGS-TTEES-HHHHTTEEE-S-STT-EEEE-TT-EEEEEE
T ss_pred CcEEEEEEEeCCCcceEEccccCHHHHhHHhhhhHHHhCCcccCc-CCCCeEEECCCCcEEEEE
Confidence 57788999999987521 211 1222 8899999999 6665554
No 87
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=32.59 E-value=1.6e+02 Score=26.19 Aligned_cols=41 Identities=15% Similarity=0.314 Sum_probs=33.4
Q ss_pred cCceEEEEEeeCCCCCCHHHHHHHHHHHHhCCCeEEEeccCCC
Q 040462 228 PSARIAAYKVCNPSGCASTDILAAFDDAIADGVDIITVSLGGN 270 (726)
Q Consensus 228 P~A~l~~~kv~~~~g~~~~~i~~ai~~A~~~gvdVIn~S~G~~ 270 (726)
++++|+.+-- +.||....++.-+++..+.|+|+|-+|--..
T Consensus 36 ~~~elvgf~~--CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~ 76 (107)
T PF08821_consen 36 EDVELVGFFT--CGGCPGRKLVRRIKKLKKNGADVIHLSSCMV 76 (107)
T ss_pred CCeEEEEEee--CCCCChhHHHHHHHHHHHCCCCEEEEcCCEe
Confidence 4688887644 4568899999999999999999999987654
No 88
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=30.69 E-value=50 Score=31.23 Aligned_cols=81 Identities=19% Similarity=0.171 Sum_probs=55.5
Q ss_pred CCCCCCCCCCCCCCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCCCcee-------------eeeeeEEEeeh
Q 040462 370 SSQACNPGCINSSLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYEKVSF-------------VVSLPAVAVSM 431 (726)
Q Consensus 370 ~~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~~~-------------~~~~p~~~i~~ 431 (726)
....|.... +.....+.+.+++| ..|..+++++||..+|+.++......+ ...+|++.+-.
T Consensus 73 Pp~aC~elr-N~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fllg 151 (193)
T KOG3920|consen 73 PPHACEELR-NEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLLG 151 (193)
T ss_pred ChhHHHHHh-hcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEec
Confidence 345565422 23356788999988 567899999999999998876543322 26688888888
Q ss_pred hhHHHHHHHHhcCCCCeEEE
Q 040462 432 ENFNSLISYKNSTKKPEAEI 451 (726)
Q Consensus 432 ~~~~~l~~~~~~~~~~~~~i 451 (726)
.+|..+..-++.-..+-+.|
T Consensus 152 ~~Gy~ir~sL~r~~r~ha~i 171 (193)
T KOG3920|consen 152 VTGYYIRVSLKRYFRDHAKI 171 (193)
T ss_pred cceEEEehhHHHhCCccEEE
Confidence 77776666666555554444
No 89
>PLN03080 Probable beta-xylosidase; Provisional
Probab=30.19 E-value=2e+02 Score=35.11 Aligned_cols=71 Identities=23% Similarity=0.121 Sum_probs=42.4
Q ss_pred eEEEEEEEEeccCCCeeEEEEE--Eeecc-----------e-eEEEEec-ceeeEEEEEEe-ccCC---CCCCeE--EEE
Q 040462 645 TVNFPRIVTNVGLANSTYRAKF--FQKFT-----------I-ISVKVVP-EKKPFVVTVTG-KGLP---ESGTVV--PAT 703 (726)
Q Consensus 645 ~~~~~rtvtnvg~~~~ty~~~v--~~~p~-----------g-~~v~v~p-~~~~~~vt~~~-~~~~---~~~~~~--~G~ 703 (726)
..+++.+|||+|+.+....+-+ .. |. | -+|.+.| |++++++++.. .... ..++|+ -|.
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~-p~~~~~~P~k~L~gF~kv~L~~Ges~~V~~~l~~~~~ls~~d~~~~~~v~~G~ 763 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRS-PPVVPGVPEKQLVGFDRVHTASGRSTETEIVVDPCKHLSVANEEGKRVLPLGD 763 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEec-CccCCCCcchhccCcEeEeeCCCCEEEEEEEeCchHHceEEcCCCcEEEeCcc
Confidence 4789999999998655544433 22 32 1 2777788 88887777765 3210 224443 365
Q ss_pred EEEE--cCCeEEEee
Q 040462 704 LVWS--DGIHSVRSP 716 (726)
Q Consensus 704 ~~~~--~~~~~vr~p 716 (726)
.++. +..|.|..+
T Consensus 764 y~l~vG~~~~~~~~~ 778 (779)
T PLN03080 764 HVLMLGDLEHSLSIE 778 (779)
T ss_pred EEEEEeCCccceEEe
Confidence 5443 456766654
No 90
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=29.06 E-value=1.7e+02 Score=35.71 Aligned_cols=67 Identities=15% Similarity=0.161 Sum_probs=41.9
Q ss_pred CCCCCCCceEEEeecCC------CCceEEEEEEEEeccCCCeeE--EEEEEeecce------------eEEEEec-ceee
Q 040462 625 SAKDLNYPSMAAQVSRA------KPFTVNFPRIVTNVGLANSTY--RAKFFQKFTI------------ISVKVVP-EKKP 683 (726)
Q Consensus 625 ~~~~ln~ps~~~~~~~~------~~~~~~~~rtvtnvg~~~~ty--~~~v~~~p~g------------~~v~v~p-~~~~ 683 (726)
...-|-|-.|..+.+.- .....+++.+|||+|+.+..- .+=+.. |.+ -+|.+.| |+++
T Consensus 642 FG~GLSYT~F~ys~l~v~~~~~~~~~~i~v~v~V~NtG~~~G~EVvQlYv~~-~~~~~~~P~k~L~gF~Kv~L~pGes~~ 720 (765)
T PRK15098 642 FGYGLSYTTFTVSDVKLSSPTMKRDGKVTASVTVTNTGKREGATVVQLYLQD-VTASMSRPVKELKGFEKIMLKPGETQT 720 (765)
T ss_pred ccCCCCCccEEeeccEeccccccCCCeEEEEEEEEECCCCCccEEEEEeccC-CCCCCCCHHHhccCceeEeECCCCeEE
Confidence 34566676666655431 023688999999999854332 222333 322 2677788 8888
Q ss_pred EEEEEEecc
Q 040462 684 FVVTVTGKG 692 (726)
Q Consensus 684 ~~vt~~~~~ 692 (726)
+++++....
T Consensus 721 V~~~l~~~~ 729 (765)
T PRK15098 721 VSFPIDIEA 729 (765)
T ss_pred EEEeecHHH
Confidence 888888654
No 91
>COG4808 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.00 E-value=1.2e+02 Score=27.96 Aligned_cols=37 Identities=11% Similarity=0.138 Sum_probs=28.2
Q ss_pred CCCCCcEEEeecceeeEEEEEeCHHHHHHHHcCCCeE
Q 040462 64 SSVGDVLVRSYRRSFNGFAAKLTDLERQKLASMEEVV 100 (726)
Q Consensus 64 ~~~~~~v~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~ 100 (726)
....+++.|.=+.+..-+.+.+++-...+|.++|++.
T Consensus 89 ~Gv~ekidY~D~yA~E~vdId~tkvd~k~L~k~~G~s 125 (152)
T COG4808 89 AGVEEKLDYKDTYAQENVDIDMTKVDFKALQKISGIS 125 (152)
T ss_pred cccceeeeeecccceeeeccceeeecHHHHhcCcCcc
Confidence 3444555555556888888999999999999999974
No 92
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=25.41 E-value=4.2e+02 Score=22.46 Aligned_cols=59 Identities=19% Similarity=0.232 Sum_probs=39.8
Q ss_pred CeeEEEEEEeecce--eEEEEec-ceeeEEEEEEeccCCCCCCeEEEEEEEEcCCeEEEeeEEEEeec
Q 040462 659 NSTYRAKFFQKFTI--ISVKVVP-EKKPFVVTVTGKGLPESGTVVPATLVWSDGIHSVRSPIVVHTQQ 723 (726)
Q Consensus 659 ~~ty~~~v~~~p~g--~~v~v~p-~~~~~~vt~~~~~~~~~~~~~~G~~~~~~~~~~vr~p~~~~~~~ 723 (726)
....++.+.. |.| +.++|.. +.-+|+|+++... .+.| .=.+.| +|.|.-.||+.+....
T Consensus 31 ~~~~~v~i~~-p~g~~~~~~v~d~~dGty~v~y~P~~---~G~~-~i~V~~-~g~~I~gSPF~v~V~~ 92 (93)
T smart00557 31 GGELEVEVTG-PSGKKVPVEVKDNGDGTYTVSYTPTE---PGDY-TVTVKF-GGEHIPGSPFTVKVGP 92 (93)
T ss_pred CCcEEEEEEC-CCCCeeEeEEEeCCCCEEEEEEEeCC---CEeE-EEEEEE-CCEECCCCCEEEEEeC
Confidence 4678888888 887 5555555 5568999999864 2332 112222 5788889999987654
No 93
>PRK15019 CsdA-binding activator; Provisional
Probab=25.17 E-value=66 Score=30.44 Aligned_cols=31 Identities=10% Similarity=0.005 Sum_probs=26.6
Q ss_pred cccccchhHHHHHHHHHHHhhCCCCCHHHHHH
Q 040462 517 ESGTSMACPHAAAVAAYVKSFHPDWSPSAIRS 548 (726)
Q Consensus 517 ~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~ 548 (726)
+.|.| =|+.|-|.+|||.+.+-..+|++|.+
T Consensus 79 f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 79 FFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 34555 58999999999999999999999876
No 94
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=25.17 E-value=58 Score=25.19 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=21.5
Q ss_pred eeecccccchhHHHHHHHH------HHHhhCCCCCHHHHHHHHH
Q 040462 514 YSIESGTSMACPHAAAVAA------YVKSFHPDWSPSAIRSAIM 551 (726)
Q Consensus 514 y~~~sGTSmAaP~VAG~aA------Ll~~~~P~~sp~~Ik~~L~ 551 (726)
--.+.||=+..=.|....+ -+.+.||.+++++|+++|.
T Consensus 11 ~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 11 QPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp --EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred cceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 3345566665544444422 2456799999999999984
No 95
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=24.57 E-value=36 Score=15.68 Aligned_cols=6 Identities=50% Similarity=0.855 Sum_probs=4.1
Q ss_pred ccCCCC
Q 040462 467 PFSSRG 472 (726)
Q Consensus 467 ~fSs~G 472 (726)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 477776
No 96
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=24.31 E-value=71 Score=29.88 Aligned_cols=32 Identities=13% Similarity=0.017 Sum_probs=27.2
Q ss_pred ecccccchhHHHHHHHHHHHhhCCCCCHHHHHH
Q 040462 516 IESGTSMACPHAAAVAAYVKSFHPDWSPSAIRS 548 (726)
Q Consensus 516 ~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~ 548 (726)
.+.|.| =|+.|-|.+|||.+.+-..+|++|.+
T Consensus 73 ~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~ 104 (138)
T TIGR03391 73 HFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLA 104 (138)
T ss_pred EEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 344555 48999999999999999999999874
No 97
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=21.02 E-value=73 Score=21.89 Aligned_cols=13 Identities=31% Similarity=0.457 Sum_probs=10.6
Q ss_pred chhHHHHHHHHHH
Q 040462 522 MACPHAAAVAAYV 534 (726)
Q Consensus 522 mAaP~VAG~aALl 534 (726)
.|||.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998744
No 98
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=21.01 E-value=87 Score=23.27 Aligned_cols=17 Identities=18% Similarity=0.159 Sum_probs=10.4
Q ss_pred CCcchhhHHHHHHHHHH
Q 040462 1 MAKINGFLLFQCLSFII 17 (726)
Q Consensus 1 M~~~~~~~~~~~~~~~~ 17 (726)
|||++.+++..+++..+
T Consensus 1 ~kk~rwiili~iv~~Cl 17 (47)
T PRK10299 1 MKKFRWVVLVVVVLACL 17 (47)
T ss_pred CceeeehHHHHHHHHHH
Confidence 89887666554444433
No 99
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=20.81 E-value=91 Score=29.16 Aligned_cols=32 Identities=19% Similarity=0.148 Sum_probs=26.9
Q ss_pred ecccccchhHHHHHHHHHHHhhCCCCCHHHHHH
Q 040462 516 IESGTSMACPHAAAVAAYVKSFHPDWSPSAIRS 548 (726)
Q Consensus 516 ~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~ 548 (726)
.+.|.| =|+.|-|.+|||.+.+-..+|++|.+
T Consensus 68 ~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 68 ELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 344555 58999999999999999999999875
No 100
>PRK13203 ureB urease subunit beta; Reviewed
Probab=20.61 E-value=1.2e+02 Score=26.69 Aligned_cols=41 Identities=15% Similarity=0.092 Sum_probs=27.6
Q ss_pred eEEEEEEEEeccCCCe----eEEEE-----------------EEeecceeEEEEec-ceeeEEE
Q 040462 645 TVNFPRIVTNVGLANS----TYRAK-----------------FFQKFTIISVKVVP-EKKPFVV 686 (726)
Q Consensus 645 ~~~~~rtvtnvg~~~~----ty~~~-----------------v~~~p~g~~v~v~p-~~~~~~v 686 (726)
..+++.+|+|.|+.+- -|+.- ..- |.|.+|..+| +++++++
T Consensus 19 r~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdI-paGTavRFEPG~~k~V~L 81 (102)
T PRK13203 19 RETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNI-PAGTAVRFEPGQTREVEL 81 (102)
T ss_pred CCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCccccc-CCCCeEeECCCCeEEEEE
Confidence 4667888999998642 23221 122 8899999999 7666555
No 101
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=20.55 E-value=87 Score=29.44 Aligned_cols=31 Identities=13% Similarity=-0.020 Sum_probs=25.3
Q ss_pred cccccchhHHHHHHHHHHHhhCCCCCHHHHHH
Q 040462 517 ESGTSMACPHAAAVAAYVKSFHPDWSPSAIRS 548 (726)
Q Consensus 517 ~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~ 548 (726)
+.|=|= |++|.|.+|++.+.+-..+|++|..
T Consensus 74 F~gdSd-A~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 74 FFGDSD-ARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred Eeccch-hHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 344443 7999999999999999999999853
No 102
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=20.04 E-value=2.8e+02 Score=31.22 Aligned_cols=47 Identities=15% Similarity=0.113 Sum_probs=36.9
Q ss_pred eEEEEEEEEeccCCCeeEEEEEEeeccee-------EEEEec-ceeeEEEEEEecc
Q 040462 645 TVNFPRIVTNVGLANSTYRAKFFQKFTII-------SVKVVP-EKKPFVVTVTGKG 692 (726)
Q Consensus 645 ~~~~~rtvtnvg~~~~ty~~~v~~~p~g~-------~v~v~p-~~~~~~vt~~~~~ 692 (726)
.-..+..+.|....+.+|+++++. ++|. .++|.| |..++.|+|+...
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g-~~~~~~~~~~~~i~v~~g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLG-LPGIKIEGPGAPIHVKAGEKVKLPVFLRTPP 401 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEec-CCCcEEEcCCceEEECCCCEEEEEEEEEech
Confidence 455677899999999999999998 6663 466666 8888888887754
No 103
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.02 E-value=2.7e+02 Score=30.45 Aligned_cols=46 Identities=20% Similarity=0.169 Sum_probs=32.4
Q ss_pred EEEEEEEEeccCCCeeEEEEEEeecceeEEEEec----------ceeeEEEEEEec
Q 040462 646 VNFPRIVTNVGLANSTYRAKFFQKFTIISVKVVP----------EKKPFVVTVTGK 691 (726)
Q Consensus 646 ~~~~rtvtnvg~~~~ty~~~v~~~p~g~~v~v~p----------~~~~~~vt~~~~ 691 (726)
..+.--+|+.+.+...-.+.++.-|.|++++|.| +++.|.|+++..
T Consensus 92 FkV~ADLt~a~~Gt~evkl~ve~l~~~ltvsV~P~~~~Vti~kk~tkk~~V~vei~ 147 (403)
T COG4856 92 FKVVADLTHAGVGTHEVKLQVEGLPDGLTVSVNPEKATVTIEKKVTKKFPVSVEID 147 (403)
T ss_pred eEEEEEhhhcCCCceEeeeEeecCCCCceEEEccceeEEEEeeeeEEEEeeeEEEc
Confidence 4455566787765555555555548999999999 667888888754
Done!