BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040463
(192 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9P6Q3|BCS1_SCHPO Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1
Length = 449
Score = 90.5 bits (223), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 100/194 (51%), Gaps = 23/194 (11%)
Query: 1 MDSNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVC 60
++SN+K M DD+ F++ ++Y G ++RGYLLY PP +GK+S A+A L++D+C
Sbjct: 212 LESNVKKMITDDVHDFLRNSQWYDTRGIPYRRGYLLYGPPGSGKTSFLYALAGELDYDIC 271
Query: 61 DLELTT--LRDNTKLRNVLIATENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPV 118
L L L D+ +L ++L K+++ +ED+D + QGR +
Sbjct: 272 VLNLAEKGLTDD-RLNHLLSNVPPKAVVLLEDVDSA--FQGRERSGE------------- 315
Query: 119 TNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKTDLTLNLLLRPGCMDMHIHMSY 178
V VT SGLLN +DGV + E + K D L+RPG +D+ ++
Sbjct: 316 --VGFHANVTFSGLLNALDGVTSSDERIIFMTTNHPEKLDPA---LVRPGRVDVKAYLGN 370
Query: 179 CTPCGLKMLASNYF 192
TP ++ + + ++
Sbjct: 371 ATPEQVREMFTRFY 384
>sp|Q54DY9|BCS1B_DICDI Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum
GN=bcsl1b PE=3 SV=1
Length = 458
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 98/207 (47%), Gaps = 22/207 (10%)
Query: 1 MDSNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVC 60
+D + + D+++F+ ++Y + G ++RGYLLY PP TGKSS A+A L +C
Sbjct: 211 LDKGKSELIIQDVKKFLNNSDWYNDRGIPYRRGYLLYGPPGTGKSSFITALAGELQLSIC 270
Query: 61 DLELTTLR-DNTKLRNVLIATENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKP-- 117
L L +T L +L +SI+ +EDID +I G H + N N+ +I
Sbjct: 271 ILNLAGKSVSDTSLNQLLATAPQRSIILLEDIDSAIQ-TGNHDLSAKSNSANAPSISSGG 329
Query: 118 --VTNVNQEPKV-------TLSGLLNFIDGVCRAVEMRGSQYSQLIIKTDLTLNL---LL 165
P V T SGLLN +DGV S+ L + T+ L L+
Sbjct: 330 LQYQGYYGNPSVSSGGSALTFSGLLNALDGVA------ASEGRILFMTTNHLEKLDKVLI 383
Query: 166 RPGCMDMHIHMSYCTPCGLKMLASNYF 192
RPG +D+ I + C+ ++ + ++
Sbjct: 384 RPGRVDLQIEIGLCSSYQMEQMFLKFY 410
>sp|P32839|BCS1_YEAST Mitochondrial chaperone BCS1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BCS1 PE=1 SV=2
Length = 456
Score = 87.8 bits (216), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 99/200 (49%), Gaps = 35/200 (17%)
Query: 1 MDSNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVC 60
+DS +K +DD+ F+K ++Y + G ++RGYLLY PP +GK+S A+A L++++C
Sbjct: 230 LDSGIKEGILDDVYDFMKNGKWYSDRGIPYRRGYLLYGPPGSGKTSFIQALAGELDYNIC 289
Query: 61 DLELT--TLRDNTKLRNVLIATENKSILAVEDIDCSINL------QGRHSQAKTLNPVNS 112
L L+ L D+ +L +++ +SIL +EDID + N QG HS
Sbjct: 290 ILNLSENNLTDD-RLNHLMNNMPERSILLLEDIDAAFNKRSQTGEQGFHSS--------- 339
Query: 113 NAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKTDLTLNLLLRPGCMDM 172
VT SGLLN +DGV + E + K D ++RPG +D
Sbjct: 340 --------------VTFSGLLNALDGVTSSEETITFMTTNHPEKLDAA---IMRPGRIDY 382
Query: 173 HIHMSYCTPCGLKMLASNYF 192
+ + TP ++ + ++
Sbjct: 383 KVFVGNATPYQVEKMFMKFY 402
>sp|Q54HY8|BCS1A_DICDI Probable mitochondrial chaperone BCS1-A OS=Dictyostelium discoideum
GN=bcs1la PE=3 SV=1
Length = 421
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 98/194 (50%), Gaps = 24/194 (12%)
Query: 4 NMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63
++K ++D++ F+ + +YRN G ++RGYLLY P GKSSL A+A LN D+C +
Sbjct: 194 DLKSKLIEDIKSFITNESWYRNRGIPYRRGYLLYGEPGNGKSSLINAIAGELNLDICIVS 253
Query: 64 LTTLR-DNTKLRNVLIATENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVN 122
L++ D+ ++ ++L KSIL +EDID + N N N
Sbjct: 254 LSSKDIDDKQINHLLNNAPPKSILLIEDIDAAFKSH------------RDNVDSNNNNSN 301
Query: 123 QEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLII----KTDLTLNLLLRPGCMDMHIHMSY 178
+T SGLLN +DGV SQ +++ K +L + L+R G +D+ I +S
Sbjct: 302 NNNSLTYSGLLNALDGVA-------SQEGRILFMTTNKIELLDSALIREGRIDLKIKVSN 354
Query: 179 CTPCGLKMLASNYF 192
T L ++++
Sbjct: 355 ATKSQAAQLFTHFY 368
>sp|Q7ZV60|BCS1_DANRE Mitochondrial chaperone BCS1 OS=Danio rerio GN=bcs1l PE=2 SV=2
Length = 420
Score = 83.6 bits (205), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 101/197 (51%), Gaps = 24/197 (12%)
Query: 1 MDSNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVC 60
++S + +DD++ F+ ++Y + G ++RGYLLY PP GKSS A+A L + +C
Sbjct: 193 LESGVAERIVDDVKEFIGNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGELGYSIC 252
Query: 61 DLELT--TLRDNTKLRNVLIATENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPV 118
+ L+ +L D+ +L ++L +SI+ +ED+D + + T NP+ +
Sbjct: 253 LMSLSDRSLSDD-RLNHLLSVAPQQSIILLEDVDAAFVSR---ELLPTENPLAYQGMG-- 306
Query: 119 TNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKTDLTLNL---LLRPGCMDMHIH 175
++T SGLLN +DGV S+ + + T+ L L+RPG +D+ +
Sbjct: 307 -------RLTFSGLLNALDGVA------SSEARIVFMTTNFIERLDPALVRPGRVDLKQY 353
Query: 176 MSYCTPCGLKMLASNYF 192
+ +C+ L + ++
Sbjct: 354 VGHCSHWQLTQMFRRFY 370
>sp|Q7ZTL7|BCS1_XENLA Mitochondrial chaperone BCS1 OS=Xenopus laevis GN=bcs1l PE=2 SV=1
Length = 419
Score = 77.4 bits (189), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 97/197 (49%), Gaps = 25/197 (12%)
Query: 1 MDSNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVC 60
++ + + D++ F++ ++Y + G ++RGYLLY PP GKSS A+A L + +C
Sbjct: 193 LEQGISEKIVQDVKGFIENPKWYSDRGIPYRRGYLLYGPPGCGKSSFITALAGELEYSIC 252
Query: 61 -DLELTTLRDNTKLRNVLIATENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVT 119
+ + +L ++L +SI+ +ED+D + ++ LN N A + +
Sbjct: 253 LMSLSDSSLSDDRLNHLLSVAPQQSIILLEDVDAAF-------VSRDLNKQNPTAYQGMG 305
Query: 120 NVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT----DLTLNLLLRPGCMDMHIH 175
++T SGLLN +DGV S ++++ T D L+RPG +D+ +
Sbjct: 306 ------RLTFSGLLNALDGVA-------STEARIVFMTTNHIDRLDPALIRPGRVDVKQY 352
Query: 176 MSYCTPCGLKMLASNYF 192
+ +CT L + ++
Sbjct: 353 VGHCTNWQLSQMFLRFY 369
>sp|Q9Y276|BCS1_HUMAN Mitochondrial chaperone BCS1 OS=Homo sapiens GN=BCS1L PE=1 SV=1
Length = 419
Score = 73.9 bits (180), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 25/186 (13%)
Query: 12 DLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVC-DLELTTLRDN 70
D++ F+ ++Y + G ++RGYLLY PP GKSS A+A L +C + +
Sbjct: 204 DVQEFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGELEHSICLLSLTDSSLSD 263
Query: 71 TKLRNVLIATENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLS 130
+L ++L +S++ +ED+D + NPV + ++T S
Sbjct: 264 DRLNHLLSVAPQQSLVLLEDVDAAF----LSRDLAVENPVKYQGLG---------RLTFS 310
Query: 131 GLLNFIDGVCRAVEMRGSQYSQLIIKT----DLTLNLLLRPGCMDMHIHMSYCTPCGLKM 186
GLLN +DGV S ++++ T D L+RPG +D+ ++ YC+ L
Sbjct: 311 GLLNALDGVA-------STEARIVFMTTNHVDRLDPALIRPGRVDLKEYVGYCSHWQLTQ 363
Query: 187 LASNYF 192
+ ++
Sbjct: 364 MFQRFY 369
>sp|Q5E9H5|BCS1_BOVIN Mitochondrial chaperone BCS1 OS=Bos taurus GN=BCS1L PE=2 SV=1
Length = 419
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 93/197 (47%), Gaps = 25/197 (12%)
Query: 1 MDSNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVC 60
++ + + D+ F+ ++Y + G ++RGYLLY PP GKSS A+A L +C
Sbjct: 193 LEQGVTERIVRDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGELQHSIC 252
Query: 61 -DLELTTLRDNTKLRNVLIATENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVT 119
+ + +L ++L +S++ +ED+D + R A+ NP+ +
Sbjct: 253 LLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDAA--FLSRDLAAE--NPIKYQGLG--- 305
Query: 120 NVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT----DLTLNLLLRPGCMDMHIH 175
++T SGLLN +DGV S ++++ T D L+RPG +DM +
Sbjct: 306 ------RLTFSGLLNALDGVA-------STEARIVFMTTNHIDRLDPALIRPGRVDMKEY 352
Query: 176 MSYCTPCGLKMLASNYF 192
+ +C+ L + ++
Sbjct: 353 VGHCSRWQLTQMFQRFY 369
>sp|Q9CZP5|BCS1_MOUSE Mitochondrial chaperone BCS1 OS=Mus musculus GN=Bcs1l PE=1 SV=1
Length = 418
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 87/188 (46%), Gaps = 25/188 (13%)
Query: 10 MDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVC-DLELTTLR 68
+ D+ F+ ++Y + G ++RGYLLY PP GKSS A+A L +C +
Sbjct: 202 VKDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGELEHSICLLSLTDSSL 261
Query: 69 DNTKLRNVLIATENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVT 128
+ +L ++L +S++ +ED+D + NP+ + ++T
Sbjct: 262 SDDRLNHLLSVAPQQSLVLLEDVDAAF----LSRDLAVENPIKYQGLG---------RLT 308
Query: 129 LSGLLNFIDGVCRAVEMRGSQYSQLIIKT----DLTLNLLLRPGCMDMHIHMSYCTPCGL 184
SGLLN +DGV S ++++ T D L+RPG +D+ ++ YC+ L
Sbjct: 309 FSGLLNALDGVA-------STEARIVFMTTNYIDRLDPALIRPGRVDLKEYVGYCSHWQL 361
Query: 185 KMLASNYF 192
+ ++
Sbjct: 362 TQMFQRFY 369
>sp|O34703|YJOB_BACSU Uncharacterized ATPase YjoB OS=Bacillus subtilis (strain 168)
GN=yjoB PE=1 SV=1
Length = 423
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 3/132 (2%)
Query: 16 FVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRN 75
F K FY+ +KRG LLY PP GK++L ++A ++ V ++T + +
Sbjct: 205 FHSDKSFYQTYDIPYKRGILLYGPPGNGKTTLVKSIAGSIDAPVAYWQITEFTSSETIEE 264
Query: 76 VLIATEN--KSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLL 133
V A ++L +EDID S+ R TL+ S + P+ GL+
Sbjct: 265 VFQAARRLAPAVLVIEDID-SMPEDVRSFFLNTLDGATSKEGLFLIGTTNYPEEIDPGLM 323
Query: 134 NFIDGVCRAVEM 145
N RA E+
Sbjct: 324 NRAGRFDRAYEI 335
>sp|Q8TX03|PAN_METKA Proteasome-activating nucleotidase OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=pan PE=3
SV=1
Length = 436
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 87/191 (45%), Gaps = 28/191 (14%)
Query: 1 MDSNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMAN-----YL 55
+D ++ ++ + +E+ +K E + VG +G LLY PP TGK+ L A+AN ++
Sbjct: 184 LDEQIREIR-EVVEKPLKEPELFEKVGVEPPKGVLLYGPPGTGKTLLAKAVANHADATFI 242
Query: 56 NFDVCDLELTTLRDNTKLRNVL--IATENK-SILAVEDIDCSINLQGRHSQAKTLNPVNS 112
+L + + +L L +A E SI+ +++ID + +
Sbjct: 243 RLAAPELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDA----------------IGA 286
Query: 113 NAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKTDLTLNLLLRPGCMDM 172
++ T+ ++E + TL+ LL +DG +++ + + D+ LLRPG D
Sbjct: 287 RRMRDATSGDREVQRTLTQLLAEMDGFDPLDDIKVIAATN---RKDILDPALLRPGRFDR 343
Query: 173 HIHMSYCTPCG 183
HI + G
Sbjct: 344 HIKIPLPDEEG 354
>sp|Q5UPR4|YR776_MIMIV Uncharacterized protein R776 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R776 PE=4 SV=1
Length = 314
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 43/151 (28%)
Query: 1 MDSNMK-HMK--MDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMAN---- 53
+DSN+ M+ + D++ F++ ++ YR +G ++RG LLY GK+ L + ++N
Sbjct: 168 LDSNLTTEMRSVLKDVDVFMRNEDTYRELGANYRRGMLLYGESGCGKTGLISIISNKYGM 227
Query: 54 ---YLNF---DVCDLELTTLRDNTKLRNVLIATENKSILAVEDIDCSINLQGRHSQAKTL 107
LN D+ D L +L N K R SIL +E+ID Q +TL
Sbjct: 228 DSYILNLNSKDMSDSVLISLASNVKAR---------SILVIEEID---------KQIETL 269
Query: 108 NPVNSNAIKPVTNVNQEPKVTLSGLLNFIDG 138
N N V++ GLL+ +DG
Sbjct: 270 ------------NANGNKNVSIGGLLSALDG 288
>sp|A6LD25|FTSH_PARD8 ATP-dependent zinc metalloprotease FtsH OS=Parabacteroides
distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
GN=ftsH PE=3 SV=1
Length = 684
Score = 47.0 bits (110), Expect = 8e-05, Method: Composition-based stats.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 34/180 (18%)
Query: 9 KMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDL------ 62
+++++ F+K E Y +G +G LL PP TGK+ L A+A N L
Sbjct: 207 EVEEIVSFLKNPEKYTELGGKIPKGALLVGPPGTGKTLLAKAVAGEANVPFFSLSGSDFV 266
Query: 63 ELTTLRDNTKLRNVLIATENKS--ILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTN 120
E+ +++R++ + KS I+ +++ID +G+ N+N N
Sbjct: 267 EMFVGVGASRVRDLFRQAKEKSPCIVFIDEIDAVGRARGK----------NAN-----MN 311
Query: 121 VNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLII----KTDLTLNLLLRPGCMDMHIHM 176
N E + TL+ LL +DG GS +I+ + D+ LLR G D IH+
Sbjct: 312 SNDERENTLNQLLTEMDGF-------GSNSGVIILAATNRADILDKALLRAGRFDRQIHV 364
>sp|P62198|PRS8_RAT 26S protease regulatory subunit 8 OS=Rattus norvegicus GN=Psmc5
PE=1 SV=1
Length = 406
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 34/186 (18%)
Query: 1 MDSNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLN---F 57
+D +K +K + +E VK E + +G A +G LLY PP TGK+ L A+A++ +
Sbjct: 154 LDKQIKEIK-EVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFI 212
Query: 58 DVCDLELTTLRDNTKLRNV----LIATENK-SILAVEDIDCSINLQGRHSQAKTLNPVNS 112
V EL R V ++A E+ SI+ +++ID + S
Sbjct: 213 RVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDS----------------IGS 256
Query: 113 NAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNLLLRPGC 169
+ ++ + + E + T+ LLN +DG ++ ++I+ T D+ + LLRPG
Sbjct: 257 SRLEGGSGGDSEVQRTMLELLNQLDG------FEATKNIKVIMATNRIDILDSALLRPGR 310
Query: 170 MDMHIH 175
+D I
Sbjct: 311 IDRKIE 316
>sp|P62197|PRS8_PIG 26S protease regulatory subunit 8 OS=Sus scrofa GN=PSMC5 PE=2 SV=1
Length = 406
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 34/186 (18%)
Query: 1 MDSNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLN---F 57
+D +K +K + +E VK E + +G A +G LLY PP TGK+ L A+A++ +
Sbjct: 154 LDKQIKEIK-EVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFI 212
Query: 58 DVCDLELTTLRDNTKLRNV----LIATENK-SILAVEDIDCSINLQGRHSQAKTLNPVNS 112
V EL R V ++A E+ SI+ +++ID + S
Sbjct: 213 RVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDS----------------IGS 256
Query: 113 NAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNLLLRPGC 169
+ ++ + + E + T+ LLN +DG ++ ++I+ T D+ + LLRPG
Sbjct: 257 SRLEGGSGGDSEVQRTMLELLNQLDG------FEATKNIKVIMATNRIDILDSALLRPGR 310
Query: 170 MDMHIH 175
+D I
Sbjct: 311 IDRKIE 316
>sp|P62196|PRS8_MOUSE 26S protease regulatory subunit 8 OS=Mus musculus GN=Psmc5 PE=1
SV=1
Length = 406
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 34/186 (18%)
Query: 1 MDSNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLN---F 57
+D +K +K + +E VK E + +G A +G LLY PP TGK+ L A+A++ +
Sbjct: 154 LDKQIKEIK-EVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFI 212
Query: 58 DVCDLELTTLRDNTKLRNV----LIATENK-SILAVEDIDCSINLQGRHSQAKTLNPVNS 112
V EL R V ++A E+ SI+ +++ID + S
Sbjct: 213 RVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDS----------------IGS 256
Query: 113 NAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNLLLRPGC 169
+ ++ + + E + T+ LLN +DG ++ ++I+ T D+ + LLRPG
Sbjct: 257 SRLEGGSGGDSEVQRTMLELLNQLDG------FEATKNIKVIMATNRIDILDSALLRPGR 310
Query: 170 MDMHIH 175
+D I
Sbjct: 311 IDRKIE 316
>sp|P62195|PRS8_HUMAN 26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1
SV=1
Length = 406
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 34/186 (18%)
Query: 1 MDSNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLN---F 57
+D +K +K + +E VK E + +G A +G LLY PP TGK+ L A+A++ +
Sbjct: 154 LDKQIKEIK-EVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFI 212
Query: 58 DVCDLELTTLRDNTKLRNV----LIATENK-SILAVEDIDCSINLQGRHSQAKTLNPVNS 112
V EL R V ++A E+ SI+ +++ID + S
Sbjct: 213 RVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDS----------------IGS 256
Query: 113 NAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNLLLRPGC 169
+ ++ + + E + T+ LLN +DG ++ ++I+ T D+ + LLRPG
Sbjct: 257 SRLEGGSGGDSEVQRTMLELLNQLDG------FEATKNIKVIMATNRIDILDSALLRPGR 310
Query: 170 MDMHIH 175
+D I
Sbjct: 311 IDRKIE 316
>sp|P62194|PRS8_BOVIN 26S protease regulatory subunit 8 OS=Bos taurus GN=PSMC5 PE=2 SV=1
Length = 406
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 34/186 (18%)
Query: 1 MDSNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLN---F 57
+D +K +K + +E VK E + +G A +G LLY PP TGK+ L A+A++ +
Sbjct: 154 LDKQIKEIK-EVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFI 212
Query: 58 DVCDLELTTLRDNTKLRNV----LIATENK-SILAVEDIDCSINLQGRHSQAKTLNPVNS 112
V EL R V ++A E+ SI+ +++ID + S
Sbjct: 213 RVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDS----------------IGS 256
Query: 113 NAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNLLLRPGC 169
+ ++ + + E + T+ LLN +DG ++ ++I+ T D+ + LLRPG
Sbjct: 257 SRLEGGSGGDSEVQRTMLELLNQLDG------FEATKNIKVIMATNRIDILDSALLRPGR 310
Query: 170 MDMHIH 175
+D I
Sbjct: 311 IDRKIE 316
>sp|Q9HGM3|YTA12_SCHPO Mitochondrial respiratory chain complexes assembly protein rca1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=yta12 PE=3 SV=1
Length = 773
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 50/175 (28%), Positives = 74/175 (42%), Gaps = 40/175 (22%)
Query: 15 RFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCD------LELTTLR 68
+F+K +FY +G RG +L PP TGK+ L A A N LE+
Sbjct: 313 KFLKNPKFYERLGAKIPRGAILSGPPGTGKTLLAKATAGEANVPFLSVSGSEFLEMFVGV 372
Query: 69 DNTKLRNVLIATENKS---ILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEP 125
+++R+ L AT K+ I+ +++ID +GR Q + N E
Sbjct: 373 GPSRVRD-LFATARKNAPCIIFIDEIDAIGKARGRGGQFGS---------------NDER 416
Query: 126 KVTLSGLLNFIDGVCRAVEMRGSQYSQLII------KTDLTLNLLLRPGCMDMHI 174
+ TL+ LL VEM G S+ I+ + D+ LLRPG D I
Sbjct: 417 ESTLNQLL---------VEMDGFTSSEHIVVFAGTNRPDVLDPALLRPGRFDRQI 462
>sp|P54814|PRS8_MANSE 26S protease regulatory subunit 8 OS=Manduca sexta PE=2 SV=1
Length = 402
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 88/186 (47%), Gaps = 34/186 (18%)
Query: 1 MDSNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMAN-----YL 55
+D +K +K + +E VK E + +G A +G LLY PP TGK+ L A+A+ ++
Sbjct: 150 LDKQIKEIK-EVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFI 208
Query: 56 NFDVCDLELTTLRDNTKLRNVL--IATENK-SILAVEDIDCSINLQGRHSQAKTLNPVNS 112
+L + + +++ L +A E+ SI+ +++ID + S
Sbjct: 209 RVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDS----------------IGS 252
Query: 113 NAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNLLLRPGC 169
+ I+ + + E + T+ LLN +DG ++ ++I+ T D+ LLRPG
Sbjct: 253 SRIESGSGGDSEVQRTMLELLNQLDG------FEATKNIKVIMATNRIDILDPALLRPGR 306
Query: 170 MDMHIH 175
+D I
Sbjct: 307 IDRKIE 312
>sp|O18413|PRS8_DROME 26S protease regulatory subunit 8 OS=Drosophila melanogaster
GN=Pros45 PE=1 SV=2
Length = 405
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 88/186 (47%), Gaps = 34/186 (18%)
Query: 1 MDSNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMAN-----YL 55
+D +K +K + +E VK E + +G A +G LLY PP TGK+ L A+A+ ++
Sbjct: 153 LDKQIKEIK-EVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFI 211
Query: 56 NFDVCDLELTTLRDNTKLRNVL--IATENK-SILAVEDIDCSINLQGRHSQAKTLNPVNS 112
+L + + +++ L +A E+ SI+ +++ID + S
Sbjct: 212 RVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDS----------------IGS 255
Query: 113 NAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNLLLRPGC 169
+ I+ + + E + T+ LLN +DG ++ ++I+ T D+ LLRPG
Sbjct: 256 SRIESGSGGDSEVQRTMLELLNQLDG------FEATKNIKVIMATNRIDILDPALLRPGR 309
Query: 170 MDMHIH 175
+D I
Sbjct: 310 IDRKIE 315
>sp|Q5UR45|YL572_MIMIV Putative AAA family ATPase L572 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L572 PE=3 SV=1
Length = 196
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 75/146 (51%), Gaps = 26/146 (17%)
Query: 64 LTTLRDNTKLRNVLIATENK-SILAVEDIDC-SINLQGRHSQAKTL------------NP 109
L ++D+ +L N+L A K +IL +EDIDC S ++ R + +T+ N
Sbjct: 18 LNNIQDDNELINLLNAVNCKETILVLEDIDCASEAVKSRAKEEETVVEKVTDDKSTLENK 77
Query: 110 VNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRA---VEMRGSQYSQLIIKTDLTLNLLLR 166
+ ++ +K V V+ K+TLSG+LN +DG+ + + + + +S+++ L+R
Sbjct: 78 ILADQLKKVEKVS---KLTLSGILNSLDGIFNSEGRIVIMTTNHSEVLDPA------LIR 128
Query: 167 PGCMDMHIHMSYCTPCGLKMLASNYF 192
G +DM I S C + + N++
Sbjct: 129 RGRIDMQIEFSNCDRYQIAKMYENFY 154
>sp|Q9SEI4|PRS6B_ARATH 26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana
GN=RPT3 PE=1 SV=1
Length = 408
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 33/167 (19%)
Query: 21 EFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLN---FDVCDLELTT--LRDNTKL-R 74
E Y+ +G RG LLY PP TGK+ L A+AN+ V E L + ++ R
Sbjct: 179 ELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVR 238
Query: 75 NVL-IATENK-SILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGL 132
+V +A EN +I+ ++++D + + T ++E + L L
Sbjct: 239 DVFRLAKENAPAIIFIDEVDA----------------IATARFDAQTGADREVQRILMEL 282
Query: 133 LNFIDGVCRAVEMRGSQYSQLIIKTDLTLNL---LLRPGCMDMHIHM 176
LN +DG + V ++ +I+ T+ L LLRPG +D I
Sbjct: 283 LNQMDGFDQTVNVK------VIMATNRADTLDPALLRPGRLDRKIEF 323
>sp|P85200|PRS6B_HELAN 26S protease regulatory subunit 6B homolog OS=Helianthus annuus
PE=1 SV=1
Length = 414
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 33/167 (19%)
Query: 21 EFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLN---FDVCDLELTT--LRDNTKL-R 74
E Y+ +G RG LLY PP TGK+ L A+AN+ V E L + ++ R
Sbjct: 185 ELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVR 244
Query: 75 NVL-IATENK-SILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGL 132
+V +A EN +I+ ++++D + + T ++E + L L
Sbjct: 245 DVFRLAKENAPAIIFIDEVDA----------------IATARFDAQTGADREVQRILMEL 288
Query: 133 LNFIDGVCRAVEMRGSQYSQLIIKTDLTLNL---LLRPGCMDMHIHM 176
LN +DG + V ++ +I+ T+ L LLRPG +D I
Sbjct: 289 LNQMDGFDQTVNVK------VIMATNRADTLDPALLRPGRLDRKIEF 329
>sp|Q9BVQ7|SPA5L_HUMAN Spermatogenesis-associated protein 5-like protein 1 OS=Homo sapiens
GN=SPATA5L1 PE=1 SV=2
Length = 753
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 21 EFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMA-----NYLNFDVCDLELTTLRDNTKLRN 75
EF R +G +G LLY PP K++L A+A ++++ DL + D+ K+ +
Sbjct: 489 EFVR-MGLTQPKGVLLYGPPGCAKTTLVRALATSCHCSFVSVSGADLFSPFVGDSEKVLS 547
Query: 76 VLIATENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNF 135
+ S A+ +D ++ G S +KT V LS LLN
Sbjct: 548 QIFRQARASTPAILFLDEIDSILGARSASKTGCDVQER--------------VLSVLLNE 593
Query: 136 IDGV-CRAVEMRGSQYSQ-----------LII----KTDLTLNLLLRPGCMDMHIHM 176
+DGV + +E RGS+ SQ +II + D+ LLRPG +D I++
Sbjct: 594 LDGVGLKTIERRGSKSSQQEFQEVFNRSVMIIAATNRPDVLDTALLRPGRLDKIIYI 650
>sp|P39925|AFG3_YEAST Mitochondrial respiratory chain complexes assembly protein AFG3
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=AFG3 PE=1 SV=1
Length = 761
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 71/172 (41%), Gaps = 31/172 (18%)
Query: 16 FVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCD------LELTTLRD 69
F+K Y +G RG +L PP TGK+ L A A N +E+
Sbjct: 306 FLKNPGKYTKLGAKIPRGAILSGPPGTGKTLLAKATAGEANVPFLSVSGSEFVEMFVGVG 365
Query: 70 NTKLRNVLIATEN--KSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKV 127
+++R++ + SI+ +++ID +G+ + N E +
Sbjct: 366 ASRVRDLFTQARSMAPSIIFIDEIDAIGKERGKGGA--------------LGGANDEREA 411
Query: 128 TLSGLLNFIDGVC---RAVEMRGSQYSQLIIKTDLTLNLLLRPGCMDMHIHM 176
TL+ LL +DG + V + G+ + D+ N L+RPG D HI +
Sbjct: 412 TLNQLLVEMDGFTTSDQVVVLAGTN------RPDVLDNALMRPGRFDRHIQI 457
>sp|Q8SQK0|PRS8_ENCCU 26S protease regulatory subunit 8 homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPT6 PE=1 SV=1
Length = 453
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 1 MDSNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANY 54
+D +K ++ + +E +K E + N+G A +G LLY PP TGK+ L A+A++
Sbjct: 201 LDEQIKEIR-EVIELPIKHPELFENLGIAQPKGVLLYGPPGTGKTLLARAVAHH 253
>sp|C7MC16|FTSH_BRAFD ATP-dependent zinc metalloprotease FtsH OS=Brachybacterium faecium
(strain ATCC 43885 / DSM 4810 / NCIB 9860) GN=ftsH PE=3
SV=1
Length = 704
Score = 43.9 bits (102), Expect = 7e-04, Method: Composition-based stats.
Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 39/180 (21%)
Query: 9 KMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDL------ 62
++D++++F+ Y+ VG +G LLY PP TGK+ L A+A N +
Sbjct: 188 ELDEIKQFLVDPGRYQAVGAKIPKGVLLYGPPGTGKTLLAKAVAGEANVPFYSISGSDFV 247
Query: 63 ELTTLRDNTKLRNVL-IATENK-SILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTN 120
E+ +++R++ A EN +I+ +++ID GRH A +
Sbjct: 248 EMFVGVGASRVRDLFNTAKENAPAIIFIDEIDAV----GRHRGAG------------MGG 291
Query: 121 VNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLII------KTDLTLNLLLRPGCMDMHI 174
+ E + TL+ +L VEM G + +Q +I + D+ LLRPG D I
Sbjct: 292 GHDEREQTLNQML---------VEMDGFEENQNVILIAATNRVDILDPALLRPGRFDRQI 342
>sp|P48601|PRS4_DROME 26S protease regulatory subunit 4 OS=Drosophila melanogaster
GN=Pros26.4 PE=2 SV=2
Length = 439
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 34/187 (18%)
Query: 1 MDSNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMAN-----YL 55
+D+ ++ +K + +E + E+Y +G +G +LY PP TGK+ L A+AN +L
Sbjct: 189 LDTQIQEIK-ESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFL 247
Query: 56 NFDVCDLELTTLRDNTKLRNVL--IATEN-KSILAVEDIDCSINLQGRHSQAKTLNPVNS 112
+L L D KL L +A E+ SI+ +++ID V +
Sbjct: 248 RVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDA----------------VGT 291
Query: 113 NAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKTDLTLNL---LLRPGC 169
+ +E + T+ LLN +DG + RG ++I+ T+ L L+RPG
Sbjct: 292 KRYDSNSGGEREIQRTMLELLNQLDG----FDSRGD--VKVIMATNRIETLDPALIRPGR 345
Query: 170 MDMHIHM 176
+D I
Sbjct: 346 IDRKIEF 352
>sp|Q01939|PRS8_YEAST 26S protease regulatory subunit 8 homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPT6 PE=1
SV=4
Length = 405
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 33/175 (18%)
Query: 13 LERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLN---FDVCDLELTTLRD 69
+E VK E + ++G A +G +LY PP TGK+ L A+A++ + V EL
Sbjct: 164 IELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYI 223
Query: 70 NTKLRNV----LIATENK-SILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQE 124
R V ++A E+ SI+ +++ID + S ++ + E
Sbjct: 224 GEGSRMVRELFVMAREHAPSIIFMDEIDS----------------IGSTRVEGSGGGDSE 267
Query: 125 PKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNLLLRPGCMDMHIHM 176
+ T+ LLN +DG S+ ++I+ T D+ LLRPG +D I
Sbjct: 268 VQRTMLELLNQLDG------FETSKNIKIIMATNRLDILDPALLRPGRIDRKIEF 316
>sp|O26824|PAN_METTH Proteasome-activating nucleotidase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=pan PE=3 SV=1
Length = 410
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 30/192 (15%)
Query: 1 MDSNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMAN-----YL 55
++ ++ +K + +E +K+ E + +G +G LLY PP TGK+ L A+A+ ++
Sbjct: 156 LEEQVREVK-ETVELPLKKPELFEKIGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFI 214
Query: 56 NFDVCDLELTTLRDNTKL-RNV--LIATENKSILAVEDIDCSINLQGRHSQAKTLNPVNS 112
+ + + +L R V L ++ SI+ +++ID V +
Sbjct: 215 KIVASEFVRKYIGEGARLVRGVFELAKEKSPSIIFIDEIDA----------------VAA 258
Query: 113 NAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGS-QYSQLIIKTDLTLNLLLRPGCMD 171
+K T+ ++E + TL LL +DG E RG+ + D+ LLRPG D
Sbjct: 259 KRLKSSTSGDREVQRTLMQLLAELDG----FESRGNVGIVAATNRPDILDPALLRPGRFD 314
Query: 172 MHIHMSYCTPCG 183
I + G
Sbjct: 315 RFIEVPLPNEDG 326
>sp|Q94BQ2|PRS8B_ARATH 26S protease regulatory subunit 8 homolog B OS=Arabidopsis thaliana
GN=RPT6B PE=2 SV=1
Length = 419
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 33/186 (17%)
Query: 1 MDSNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLN---F 57
+D +K +K + +E +K E + ++G A +G LLY PP TGK+ L A+A++ +
Sbjct: 166 LDQQIKEIK-EVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFI 224
Query: 58 DVCDLELTTLRDNTKLRNV----LIATENK-SILAVEDIDCSINLQGRHSQAKTLNPVNS 112
V EL R V ++A E+ SI+ +++ID SI S +
Sbjct: 225 RVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEID-SIGSARMESGS-------- 275
Query: 113 NAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNLLLRPGC 169
N + E + T+ LLN +DG S ++++ T D+ LLRPG
Sbjct: 276 ------GNGDSEVQRTMLELLNQLDG------FEASNKIKVLMATNRIDILDQALLRPGR 323
Query: 170 MDMHIH 175
+D I
Sbjct: 324 IDRKIE 329
>sp|P78578|PRS6B_ASPNG 26S protease regulatory subunit 6B homolog OS=Aspergillus niger
GN=tbpA PE=3 SV=1
Length = 423
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 33/167 (19%)
Query: 21 EFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMAN-----YLNFDVCDLELTTLRDNTKL-R 74
+ Y+ +G RG LLY PP TGK+ L A+AN ++ + + L + ++ R
Sbjct: 190 DLYKQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTTASFIRVNGSEFVQKYLGEGPRMVR 249
Query: 75 NVL-IATENK-SILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGL 132
+V +A EN +I+ +++ID + + T ++E + L L
Sbjct: 250 DVFRMARENSPAIIFIDEIDA----------------IATKRFDAQTGADREVQRILLEL 293
Query: 133 LNFIDGVCRAVEMRGSQYSQLIIKTDLTLNL---LLRPGCMDMHIHM 176
LN +DG ++ ++ +I+ T+ L LLRPG +D I
Sbjct: 294 LNQMDGFEQSSNVK------VIMATNRADTLDPALLRPGRLDRKIEF 334
>sp|A6VHR1|PAN_METM7 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1
Length = 407
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 76/172 (44%), Gaps = 33/172 (19%)
Query: 17 VKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLN---FDVCDLELTT--LRDNT 71
+K E + VG +G LLY PP TGK+ L A+A N V EL + +
Sbjct: 168 LKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGA 227
Query: 72 KL-RNVLIATENKS--ILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVT 128
KL R+V + KS I+ +++ID V S + +T ++E + T
Sbjct: 228 KLVRDVFKLAKEKSPCIIFIDEIDA----------------VASKRTESLTGGDREVQRT 271
Query: 129 LSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNLLLRPGCMDMHIHMS 177
L LL +DG + RG ++I T D+ +LRPG D I +S
Sbjct: 272 LMQLLAEMDG----FDSRGD--VKIIAATNRPDILDPAILRPGRFDRIIEIS 317
>sp|Q9C5U3|PRS8A_ARATH 26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana
GN=RPT6A PE=2 SV=1
Length = 419
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 33/186 (17%)
Query: 1 MDSNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLN---F 57
+D +K +K + +E +K E + ++G A +G LLY PP TGK+ L A+A++ +
Sbjct: 166 LDQQIKEIK-EVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFI 224
Query: 58 DVCDLELTTLRDNTKLRNV----LIATENK-SILAVEDIDCSINLQGRHSQAKTLNPVNS 112
V EL R V ++A E+ SI+ +++ID SI S +
Sbjct: 225 RVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEID-SIGSARMESGS-------- 275
Query: 113 NAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNLLLRPGC 169
N + E + T+ LLN +DG S ++++ T D+ LLRPG
Sbjct: 276 ------GNGDSEVQRTMLELLNQLDG------FEASNKIKVLMATNRIDILDQALLRPGR 323
Query: 170 MDMHIH 175
+D I
Sbjct: 324 IDRKIE 329
>sp|Q6LWR0|PAN_METMP Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain S2 / LL) GN=pan PE=3 SV=1
Length = 407
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 76/172 (44%), Gaps = 33/172 (19%)
Query: 17 VKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLN---FDVCDLELTT--LRDNT 71
+K E + VG +G LLY PP TGK+ L A+A N V EL + +
Sbjct: 168 LKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGA 227
Query: 72 KL-RNVLIATENKS--ILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVT 128
KL R+V + KS I+ +++ID V S + +T ++E + T
Sbjct: 228 KLVRDVFKLAKEKSPCIIFIDEIDA----------------VASKRTESLTGGDREVQRT 271
Query: 129 LSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNLLLRPGCMDMHIHMS 177
L LL +DG + RG ++I T D+ +LRPG D I +S
Sbjct: 272 LMQLLAEMDG----FDSRGD--VKIIAATNRPDILDPAILRPGRFDRIIEIS 317
>sp|A9A916|PAN_METM6 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1
Length = 407
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 76/172 (44%), Gaps = 33/172 (19%)
Query: 17 VKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLN---FDVCDLELTT--LRDNT 71
+K E + VG +G LLY PP TGK+ L A+A N V EL + +
Sbjct: 168 LKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGA 227
Query: 72 KL-RNVLIATENKS--ILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVT 128
KL R+V + KS I+ +++ID V S + +T ++E + T
Sbjct: 228 KLVRDVFKLAKEKSPCIIFIDEIDA----------------VASKRTESLTGGDREVQRT 271
Query: 129 LSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNLLLRPGCMDMHIHMS 177
L LL +DG + RG ++I T D+ +LRPG D I +S
Sbjct: 272 LMQLLAEMDG----FDSRGD--VKIIAATNRPDILDPAILRPGRFDRIIEIS 317
>sp|A4G0S4|PAN_METM5 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1
Length = 407
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 76/172 (44%), Gaps = 33/172 (19%)
Query: 17 VKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLN---FDVCDLELTT--LRDNT 71
+K E + VG +G LLY PP TGK+ L A+A N V EL + +
Sbjct: 168 LKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGA 227
Query: 72 KL-RNVLIATENKS--ILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVT 128
KL R+V + KS I+ +++ID V S + +T ++E + T
Sbjct: 228 KLVRDVFKLAKEKSPCIIFIDEIDA----------------VASKRTESLTGGDREVQRT 271
Query: 129 LSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNLLLRPGCMDMHIHMS 177
L LL +DG + RG ++I T D+ +LRPG D I +S
Sbjct: 272 LMQLLAEMDG----FDSRGD--VKIIAATNRPDILDPAILRPGRFDRIIEIS 317
>sp|P54778|PRS6B_SOLTU 26S protease regulatory subunit 6B homolog OS=Solanum tuberosum
PE=2 SV=1
Length = 413
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 33/167 (19%)
Query: 21 EFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLN---FDVCDLELTT--LRDNTKL-R 74
E Y+ +G RG LLY PP TGK+ L A+A++ V E L + ++ R
Sbjct: 184 ELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVR 243
Query: 75 NVL-IATEN-KSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGL 132
+V +A EN +I+ ++++D + + T ++E + L L
Sbjct: 244 DVFRLAKENAPAIIFIDEVDA----------------IATARFDAQTGADREVQRILMEL 287
Query: 133 LNFIDGVCRAVEMRGSQYSQLIIKTDLTLNL---LLRPGCMDMHIHM 176
LN +DG + V ++ +I+ T+ L LLRPG +D I
Sbjct: 288 LNQMDGFDQTVNVK------VIMATNRADTLDPALLRPGRLDRKIEF 328
>sp|A6UQT3|PAN_METVS Proteasome-activating nucleotidase OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1
Length = 407
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 76/172 (44%), Gaps = 33/172 (19%)
Query: 17 VKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLN---FDVCDLELTT--LRDNT 71
+K E + VG +G LLY PP TGK+ L A+A N V EL + +
Sbjct: 168 LKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVARETNASFVRVVGSELVKKFIGEGA 227
Query: 72 KL-RNVLIATENKS--ILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVT 128
KL R+V + KS I+ +++ID V S + +T ++E + T
Sbjct: 228 KLVRDVFKLAKEKSPCIIFIDEIDA----------------VASKRTESLTGGDREVQRT 271
Query: 129 LSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNLLLRPGCMDMHIHMS 177
L LL +DG + RG ++I T D+ +LRPG D I ++
Sbjct: 272 LMQLLAEMDG----FDSRGD--VKIIAATNRPDILDPAILRPGRFDRIIEIA 317
>sp|Q90732|PRS4_CHICK 26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2
SV=1
Length = 440
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 34/187 (18%)
Query: 1 MDSNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMAN-----YL 55
+D+ ++ +K + +E + E+Y +G +G +LY PP TGK+ L A+AN +L
Sbjct: 190 LDNQIQEIK-ESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFL 248
Query: 56 NFDVCDLELTTLRDNTKLRNVL--IATEN-KSILAVEDIDCSINLQGRHSQAKTLNPVNS 112
+L L D KL L +A E+ SI+ +++ID + +
Sbjct: 249 RVVGSELIQKYLGDGPKLVRELFRVAEEHGPSIVFIDEIDA----------------IGT 292
Query: 113 NAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKTDLTLNL---LLRPGC 169
+ +E + T+ LLN +DG + RG ++I+ T+ L L+RPG
Sbjct: 293 KRYDSNSGGEREIQRTMLELLNQLDG----FDSRGD--VKVIMATNRIETLDPALIRPGR 346
Query: 170 MDMHIHM 176
+D I
Sbjct: 347 IDRKIEF 353
>sp|P34123|PRS6B_DICDI 26S protease regulatory subunit 6B homolog OS=Dictyostelium
discoideum GN=psmC4 PE=1 SV=1
Length = 403
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 33/166 (19%)
Query: 22 FYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLN---FDVCDLELTT--LRDNTKL-RN 75
Y+ +G RG LLY PP TGK+ L A+A++ + V E L + +L R+
Sbjct: 175 LYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTSAAFIRVVGSEFVQKYLGEGPRLVRD 234
Query: 76 VL-IATENK-SILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLL 133
V +A EN +I+ +++ID + + T ++E + L LL
Sbjct: 235 VFRLARENSPAIIFIDEIDA----------------IATKRFDAQTGADREVQRILMELL 278
Query: 134 NFIDGVCRAVEMRGSQYSQLIIKTDLTLNL---LLRPGCMDMHIHM 176
N +DG +V ++ +I+ T+ L LLRPG +D I
Sbjct: 279 NQMDGFDVSVNVK------VIMATNRQDTLDPALLRPGRLDRKIEF 318
>sp|Q25544|PRS8_NAEFO 26S protease regulatory subunit 8 homolog OS=Naegleria fowleri PE=2
SV=1
Length = 414
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 86/188 (45%), Gaps = 37/188 (19%)
Query: 1 MDSNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMAN-----YL 55
+D +K +K + +E +K E + ++G A +G ++Y PP TGK+ L A+A+ ++
Sbjct: 161 LDEQIKEIK-EVIELPIKHPELFESLGIAQPKGVIMYGPPGTGKTLLARAVAHHTDCTFI 219
Query: 56 NFDVCDLELTTLRDNTKLRNVL--IATENK-SILAVEDIDC--SINLQGRHSQAKTLNPV 110
+L + + +K+ L +A E+ SI+ +++ID S +G
Sbjct: 220 RVSGSELVQKYIGEGSKMVRELFVMAREHAPSIIFMDEIDSIGSTRTEGGKGGG------ 273
Query: 111 NSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNLLLRP 167
+ E + T+ LLN +DG +Q ++I+ T D+ LLRP
Sbjct: 274 -----------DSEVQRTMLELLNQLDG------FESTQNIKIIMATNRIDILDPALLRP 316
Query: 168 GCMDMHIH 175
G +D I
Sbjct: 317 GRIDRKIE 324
>sp|P62193|PRS4_RAT 26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1
PE=2 SV=1
Length = 440
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 34/187 (18%)
Query: 1 MDSNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMAN-----YL 55
+D+ ++ +K + +E + E+Y +G +G +LY PP TGK+ L A+AN +L
Sbjct: 190 LDNQIQEIK-ESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFL 248
Query: 56 NFDVCDLELTTLRDNTKLRNVL--IATEN-KSILAVEDIDCSINLQGRHSQAKTLNPVNS 112
+L L D KL L +A E+ SI+ +++ID + +
Sbjct: 249 RVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDA----------------IGT 292
Query: 113 NAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKTDLTLNL---LLRPGC 169
+ +E + T+ LLN +DG + RG ++I+ T+ L L+RPG
Sbjct: 293 KRYDSNSGGEREIQRTMLELLNQLDG----FDSRGD--VKVIMATNRIETLDPALIRPGR 346
Query: 170 MDMHIHM 176
+D I
Sbjct: 347 IDRKIEF 353
>sp|P62192|PRS4_MOUSE 26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1
SV=1
Length = 440
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 34/187 (18%)
Query: 1 MDSNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMAN-----YL 55
+D+ ++ +K + +E + E+Y +G +G +LY PP TGK+ L A+AN +L
Sbjct: 190 LDNQIQEIK-ESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFL 248
Query: 56 NFDVCDLELTTLRDNTKLRNVL--IATEN-KSILAVEDIDCSINLQGRHSQAKTLNPVNS 112
+L L D KL L +A E+ SI+ +++ID + +
Sbjct: 249 RVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDA----------------IGT 292
Query: 113 NAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKTDLTLNL---LLRPGC 169
+ +E + T+ LLN +DG + RG ++I+ T+ L L+RPG
Sbjct: 293 KRYDSNSGGEREIQRTMLELLNQLDG----FDSRGD--VKVIMATNRIETLDPALIRPGR 346
Query: 170 MDMHIHM 176
+D I
Sbjct: 347 IDRKIEF 353
>sp|P62191|PRS4_HUMAN 26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1
SV=1
Length = 440
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 34/187 (18%)
Query: 1 MDSNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMAN-----YL 55
+D+ ++ +K + +E + E+Y +G +G +LY PP TGK+ L A+AN +L
Sbjct: 190 LDNQIQEIK-ESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFL 248
Query: 56 NFDVCDLELTTLRDNTKLRNVL--IATEN-KSILAVEDIDCSINLQGRHSQAKTLNPVNS 112
+L L D KL L +A E+ SI+ +++ID + +
Sbjct: 249 RVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDA----------------IGT 292
Query: 113 NAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKTDLTLNL---LLRPGC 169
+ +E + T+ LLN +DG + RG ++I+ T+ L L+RPG
Sbjct: 293 KRYDSNSGGEREIQRTMLELLNQLDG----FDSRGD--VKVIMATNRIETLDPALIRPGR 346
Query: 170 MDMHIHM 176
+D I
Sbjct: 347 IDRKIEF 353
>sp|Q8SQI9|PRS6B_ENCCU 26S protease regulatory subunit 6B homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU08_1970 PE=1 SV=1
Length = 387
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 27/164 (16%)
Query: 21 EFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMAN-----YLNFDVCDLELTTLRDNTKL-R 74
+ YR +G +G LLY PP TGK+ L A+AN ++ + + L + ++ R
Sbjct: 158 DLYRQIGIDPPQGVLLYGPPGTGKTMLVKAVANHTKATFIRVNGSEFVQKYLGEGPRMVR 217
Query: 75 NVLIATENK--SILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGL 132
+V K SI+ ++++D + + T+ ++E + L L
Sbjct: 218 DVFRLAREKAPSIVFIDEVDS----------------IATKRFDASTSADREVQRVLIEL 261
Query: 133 LNFIDGVCRAVEMRGSQYSQLIIKTDLTLNLLLRPGCMDMHIHM 176
LN +DG A ++ + + D LLRPG +D I
Sbjct: 262 LNQMDGFDPAANVKVIMATN---RADTIDPALLRPGRLDRKIEF 302
>sp|P34124|PRS8_DICDI 26S protease regulatory subunit 8 OS=Dictyostelium discoideum
GN=psmC5 PE=1 SV=2
Length = 403
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 1 MDSNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANY 54
+D +K +K + +E +K E + ++G A +G LLY PP TGK+ L A+A++
Sbjct: 150 LDKQIKEIK-EVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHH 202
>sp|A7I8B8|PAN_METB6 Proteasome-activating nucleotidase OS=Methanoregula boonei (strain
6A8) GN=pan PE=3 SV=1
Length = 436
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 75/171 (43%), Gaps = 33/171 (19%)
Query: 17 VKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLN---FDVCDLELTT--LRDNT 71
+KR E + +G +G LLY PP TGK+ L A+A+ N V EL + +
Sbjct: 198 LKRPELFTQIGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAHFMRVVGSELVQKYIGEGA 257
Query: 72 KLRNVLIATENK---SILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVT 128
+L L K +I+ +++ID V ++ + T+ ++E + T
Sbjct: 258 RLVRELFDLAKKKAPTIIFIDEIDA----------------VGASRTEANTSGDREVQRT 301
Query: 129 LSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNLLLRPGCMDMHIHM 176
L LL +DG E RG ++I T D+ LLRPG D I +
Sbjct: 302 LMQLLAGMDG----FETRGD--VKIIGATNRIDILDKALLRPGRFDRIIEI 346
>sp|P46470|PRS8_XENLA 26S protease regulatory subunit 8 OS=Xenopus laevis GN=psmc5 PE=2
SV=2
Length = 461
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 37/188 (19%)
Query: 1 MDSNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLN---F 57
+D +K +K + +E VK E + +G A +G LLY PP TGK+ L A+A++ +
Sbjct: 149 LDKQIKEIK-EVIELPVKHPEHFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFI 207
Query: 58 DVCDLELTTLRDNTKLRNV----LIATENK-SILAVEDIDC-SINLQGRHSQAKTLNPVN 111
V EL R V ++A E+ SI+ +++ID L+G
Sbjct: 208 RVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSRLEGG----------- 256
Query: 112 SNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNLLLRPG 168
+ + E + T+ LLN +DG ++ ++I+ T D+ + LLRPG
Sbjct: 257 -------SGGDSEVQRTMLELLNQLDG------FEATKNIKVIMATNRIDILDSALLRPG 303
Query: 169 CMDMHIHM 176
+D I
Sbjct: 304 RIDRKIEF 311
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,975,948
Number of Sequences: 539616
Number of extensions: 2322079
Number of successful extensions: 8656
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 127
Number of HSP's that attempted gapping in prelim test: 8192
Number of HSP's gapped (non-prelim): 562
length of query: 192
length of database: 191,569,459
effective HSP length: 111
effective length of query: 81
effective length of database: 131,672,083
effective search space: 10665438723
effective search space used: 10665438723
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)