Query 040463
Match_columns 192
No_of_seqs 114 out of 1680
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 08:43:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040463.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040463hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1222 RPT1 ATP-dependent 26S 100.0 7.7E-38 1.7E-42 256.8 12.7 167 3-191 157-334 (406)
2 KOG0743 AAA+-type ATPase [Post 100.0 2.5E-34 5.5E-39 242.3 17.2 174 1-192 205-383 (457)
3 KOG0734 AAA+-type ATPase conta 100.0 1.5E-32 3.2E-37 234.7 12.0 162 3-192 310-484 (752)
4 KOG0730 AAA+-type ATPase [Post 100.0 1.7E-32 3.6E-37 239.1 12.5 162 3-191 440-614 (693)
5 KOG0733 Nuclear AAA ATPase (VC 100.0 7.1E-32 1.5E-36 233.4 14.2 162 3-191 517-691 (802)
6 KOG0728 26S proteasome regulat 100.0 7.1E-31 1.5E-35 207.6 11.5 166 3-190 153-329 (404)
7 KOG0727 26S proteasome regulat 100.0 4.6E-31 1E-35 208.9 10.4 165 4-190 162-337 (408)
8 KOG0733 Nuclear AAA ATPase (VC 100.0 3.2E-30 6.8E-35 223.2 13.2 164 4-191 197-373 (802)
9 KOG0731 AAA+-type ATPase conta 100.0 6.2E-30 1.3E-34 228.2 13.5 166 3-192 317-495 (774)
10 KOG0726 26S proteasome regulat 100.0 9.3E-31 2E-35 210.5 6.2 166 3-190 191-367 (440)
11 KOG0736 Peroxisome assembly fa 100.0 2.3E-29 5E-34 222.2 12.5 163 3-189 678-854 (953)
12 PTZ00454 26S protease regulato 100.0 6.1E-28 1.3E-32 206.1 14.4 167 3-191 151-328 (398)
13 KOG0652 26S proteasome regulat 100.0 3.3E-28 7.1E-33 193.5 10.2 166 3-190 177-353 (424)
14 TIGR03689 pup_AAA proteasome A 100.0 1.7E-27 3.6E-32 207.8 14.1 165 3-192 188-378 (512)
15 PRK03992 proteasome-activating 99.9 3.2E-27 7E-32 201.7 14.9 168 3-192 137-315 (389)
16 KOG0729 26S proteasome regulat 99.9 7E-28 1.5E-32 192.1 8.8 166 3-190 183-359 (435)
17 COG0465 HflB ATP-dependent Zn 99.9 5.3E-27 1.1E-31 206.0 12.7 164 3-191 156-332 (596)
18 KOG0735 AAA+-type ATPase [Post 99.9 9.6E-27 2.1E-31 204.4 13.9 162 3-190 673-846 (952)
19 KOG0738 AAA+-type ATPase [Post 99.9 4.2E-27 9.2E-32 195.2 10.4 165 3-192 218-395 (491)
20 PTZ00361 26 proteosome regulat 99.9 1.2E-26 2.5E-31 199.8 12.2 168 3-192 189-367 (438)
21 TIGR01243 CDC48 AAA family ATP 99.9 4.5E-26 9.9E-31 208.3 15.3 164 3-191 459-634 (733)
22 TIGR01241 FtsH_fam ATP-depende 99.9 4.6E-26 1E-30 200.1 14.1 166 3-192 61-238 (495)
23 COG0464 SpoVK ATPases of the A 99.9 7.2E-26 1.6E-30 198.9 15.1 163 3-192 248-423 (494)
24 COG1223 Predicted ATPase (AAA+ 99.9 5.1E-26 1.1E-30 180.6 9.6 153 8-191 131-296 (368)
25 CHL00195 ycf46 Ycf46; Provisio 99.9 2.5E-25 5.4E-30 194.0 14.5 143 23-192 251-405 (489)
26 KOG0739 AAA+-type ATPase [Post 99.9 4.2E-26 9.1E-31 184.1 8.6 161 3-192 139-312 (439)
27 CHL00176 ftsH cell division pr 99.9 2.8E-25 6.1E-30 199.0 14.0 166 3-192 189-366 (638)
28 KOG0651 26S proteasome regulat 99.9 2.5E-26 5.4E-31 186.0 6.5 164 4-189 139-313 (388)
29 TIGR01242 26Sp45 26S proteasom 99.9 4.4E-25 9.6E-30 187.2 13.2 167 3-191 128-305 (364)
30 PLN00020 ribulose bisphosphate 99.9 1.9E-24 4.2E-29 180.1 13.6 148 23-192 140-311 (413)
31 KOG0737 AAA+-type ATPase [Post 99.9 1.6E-24 3.5E-29 178.9 9.2 163 3-192 98-274 (386)
32 CHL00206 ycf2 Ycf2; Provisiona 99.9 1.8E-23 3.9E-28 199.0 12.9 140 20-189 1619-1814(2281)
33 PRK10733 hflB ATP-dependent me 99.9 4.5E-23 9.7E-28 185.9 13.8 165 4-192 159-335 (644)
34 TIGR01243 CDC48 AAA family ATP 99.9 1.4E-22 3.1E-27 185.4 14.6 162 3-191 184-358 (733)
35 KOG0741 AAA+-type ATPase [Post 99.9 5.6E-23 1.2E-27 176.2 6.9 164 2-190 227-412 (744)
36 KOG0740 AAA+-type ATPase [Post 99.9 1.5E-21 3.2E-26 165.8 8.9 162 3-192 159-333 (428)
37 KOG0730 AAA+-type ATPase [Post 99.9 2.8E-21 6.2E-26 169.2 10.6 158 5-191 192-363 (693)
38 KOG0732 AAA+-type ATPase conta 99.8 1.3E-20 2.7E-25 173.0 12.9 161 3-190 271-449 (1080)
39 PF00004 AAA: ATPase family as 99.8 1.2E-19 2.5E-24 131.7 7.8 118 34-177 1-131 (132)
40 TIGR02881 spore_V_K stage V sp 99.8 2.2E-18 4.8E-23 140.1 14.2 155 3-191 12-190 (261)
41 TIGR02880 cbbX_cfxQ probable R 99.8 3.8E-18 8.2E-23 140.3 13.3 157 3-192 28-208 (284)
42 CHL00181 cbbX CbbX; Provisiona 99.8 3.4E-18 7.3E-23 140.7 12.7 157 3-192 29-209 (287)
43 PF05496 RuvB_N: Holliday junc 99.8 1.6E-17 3.5E-22 130.6 13.4 125 33-190 52-190 (233)
44 KOG0744 AAA+-type ATPase [Post 99.7 2.2E-17 4.8E-22 134.9 8.3 161 3-191 148-339 (423)
45 KOG0742 AAA+-type ATPase [Post 99.7 2.5E-17 5.4E-22 138.3 6.9 133 32-192 385-528 (630)
46 COG0466 Lon ATP-dependent Lon 99.7 1.4E-15 3E-20 135.0 13.7 150 7-192 329-508 (782)
47 KOG0736 Peroxisome assembly fa 99.7 2.9E-16 6.3E-21 139.9 9.3 151 12-192 412-576 (953)
48 COG2256 MGS1 ATPase related to 99.6 1.5E-15 3.2E-20 127.4 11.5 113 32-190 49-174 (436)
49 KOG2004 Mitochondrial ATP-depe 99.6 2.3E-15 5E-20 133.4 13.1 155 5-192 415-596 (906)
50 PRK00080 ruvB Holliday junctio 99.6 5.5E-15 1.2E-19 123.9 14.6 129 31-191 51-192 (328)
51 TIGR00763 lon ATP-dependent pr 99.6 7E-15 1.5E-19 135.6 15.9 132 32-192 348-505 (775)
52 TIGR00635 ruvB Holliday juncti 99.6 1.2E-14 2.7E-19 120.2 14.8 129 31-191 30-171 (305)
53 PF05673 DUF815: Protein of un 99.6 8.7E-15 1.9E-19 116.5 13.0 147 3-192 33-207 (249)
54 COG2255 RuvB Holliday junction 99.6 2.4E-14 5.1E-19 115.5 12.7 148 7-190 32-192 (332)
55 TIGR02640 gas_vesic_GvpN gas v 99.6 4.5E-14 9.8E-19 114.9 14.2 145 3-191 4-197 (262)
56 TIGR02639 ClpA ATP-dependent C 99.6 2.2E-14 4.7E-19 131.6 10.5 129 28-190 200-356 (731)
57 PRK04195 replication factor C 99.5 2.7E-13 5.9E-18 119.1 15.5 141 3-191 20-172 (482)
58 KOG0735 AAA+-type ATPase [Post 99.5 7E-14 1.5E-18 124.1 10.9 137 31-191 431-585 (952)
59 PRK06893 DNA replication initi 99.5 1.6E-13 3.4E-18 109.6 10.2 123 32-191 40-173 (229)
60 PHA02544 44 clamp loader, smal 99.5 4.6E-13 1E-17 111.4 13.2 118 32-190 44-171 (316)
61 TIGR02928 orc1/cdc6 family rep 99.5 5.8E-13 1.3E-17 112.7 14.0 127 31-191 40-211 (365)
62 PRK10787 DNA-binding ATP-depen 99.5 9.1E-13 2E-17 121.3 16.0 132 32-192 350-506 (784)
63 PRK13342 recombination factor 99.5 4.2E-13 9.1E-18 115.8 12.7 114 32-191 37-163 (413)
64 PLN03025 replication factor C 99.5 3.3E-13 7.2E-18 112.7 11.2 117 33-190 36-169 (319)
65 COG2607 Predicted ATPase (AAA+ 99.5 1.4E-12 3E-17 103.1 13.4 146 3-191 66-238 (287)
66 PRK05342 clpX ATP-dependent pr 99.5 3E-12 6.4E-17 110.2 15.9 66 31-96 108-187 (412)
67 TIGR00362 DnaA chromosomal rep 99.5 1.6E-13 3.4E-18 118.1 8.1 123 32-191 137-280 (405)
68 PRK14962 DNA polymerase III su 99.5 5.7E-13 1.2E-17 116.5 11.2 119 31-190 36-187 (472)
69 PRK07003 DNA polymerase III su 99.5 6.2E-13 1.4E-17 120.1 11.6 120 31-191 38-190 (830)
70 PRK00411 cdc6 cell division co 99.4 2.8E-12 6E-17 109.7 14.5 126 31-191 55-219 (394)
71 PRK11034 clpA ATP-dependent Cl 99.4 4.2E-13 9E-18 122.9 9.7 127 28-190 204-360 (758)
72 TIGR03345 VI_ClpV1 type VI sec 99.4 1E-12 2.2E-17 122.1 12.2 128 28-190 205-361 (852)
73 PRK08727 hypothetical protein; 99.4 7.2E-13 1.6E-17 106.1 9.8 120 32-190 42-173 (233)
74 PRK00149 dnaA chromosomal repl 99.4 2.2E-13 4.7E-18 118.8 7.3 123 32-191 149-292 (450)
75 TIGR01650 PD_CobS cobaltochela 99.4 7.2E-13 1.6E-17 110.1 9.9 129 30-190 63-231 (327)
76 PRK14956 DNA polymerase III su 99.4 7.6E-13 1.6E-17 115.0 10.2 118 32-190 41-191 (484)
77 TIGR03420 DnaA_homol_Hda DnaA 99.4 1.2E-12 2.5E-17 103.7 10.4 122 31-191 38-171 (226)
78 PRK12323 DNA polymerase III su 99.4 6.1E-13 1.3E-17 118.7 9.5 118 32-190 39-194 (700)
79 PRK07940 DNA polymerase III su 99.4 2.4E-12 5.2E-17 110.2 12.7 119 30-189 35-186 (394)
80 PRK10865 protein disaggregatio 99.4 2E-12 4.3E-17 120.4 12.1 128 28-190 196-352 (857)
81 PRK08084 DNA replication initi 99.4 1.3E-12 2.8E-17 104.7 9.5 121 32-190 46-178 (235)
82 TIGR00390 hslU ATP-dependent p 99.4 3.6E-12 7.9E-17 108.8 12.7 37 31-67 47-83 (441)
83 PF00308 Bac_DnaA: Bacterial d 99.4 5.3E-13 1.2E-17 105.9 6.8 122 33-191 36-178 (219)
84 PRK14961 DNA polymerase III su 99.4 2.6E-12 5.6E-17 109.2 11.5 119 31-190 38-189 (363)
85 cd00009 AAA The AAA+ (ATPases 99.4 5.4E-12 1.2E-16 91.7 11.7 114 31-178 19-151 (151)
86 PRK05201 hslU ATP-dependent pr 99.4 3.2E-12 6.9E-17 109.2 11.8 37 31-67 50-86 (443)
87 COG1474 CDC6 Cdc6-related prot 99.4 8.1E-12 1.8E-16 106.0 13.9 122 30-190 41-201 (366)
88 PRK11034 clpA ATP-dependent Cl 99.4 3.2E-12 6.8E-17 117.2 11.9 128 33-192 490-666 (758)
89 TIGR00382 clpX endopeptidase C 99.4 1.5E-11 3.2E-16 105.6 15.2 65 32-96 117-195 (413)
90 PRK14960 DNA polymerase III su 99.4 3.1E-12 6.6E-17 114.4 10.7 119 31-190 37-188 (702)
91 COG0714 MoxR-like ATPases [Gen 99.4 6.7E-12 1.4E-16 105.3 12.1 128 30-189 42-200 (329)
92 PRK08903 DnaA regulatory inact 99.4 8E-12 1.7E-16 99.3 11.9 116 30-190 41-168 (227)
93 TIGR03346 chaperone_ClpB ATP-d 99.4 4.3E-12 9.2E-17 118.3 11.9 128 28-190 191-347 (852)
94 PRK14949 DNA polymerase III su 99.4 3.3E-12 7.3E-17 117.2 10.9 118 32-190 39-189 (944)
95 TIGR02639 ClpA ATP-dependent C 99.4 5.2E-12 1.1E-16 116.0 12.3 126 33-192 486-662 (731)
96 PRK12422 chromosomal replicati 99.4 1.7E-12 3.6E-17 112.9 8.5 123 32-191 142-283 (445)
97 PRK06645 DNA polymerase III su 99.4 6.6E-12 1.4E-16 110.5 12.0 120 31-191 43-199 (507)
98 PTZ00112 origin recognition co 99.4 1.2E-11 2.5E-16 113.1 13.9 119 34-191 784-948 (1164)
99 PRK07994 DNA polymerase III su 99.4 3.8E-12 8.2E-17 114.4 10.7 118 32-190 39-189 (647)
100 PRK14086 dnaA chromosomal repl 99.4 1.7E-12 3.7E-17 115.5 8.3 122 33-191 316-458 (617)
101 KOG2028 ATPase related to the 99.4 3.9E-12 8.4E-17 106.1 9.6 113 32-190 163-292 (554)
102 PRK05642 DNA replication initi 99.4 4.2E-12 9E-17 101.8 9.5 120 32-190 46-177 (234)
103 PRK14958 DNA polymerase III su 99.4 3.9E-12 8.4E-17 112.3 10.1 119 31-190 38-189 (509)
104 PHA02244 ATPase-like protein 99.4 1.7E-11 3.7E-16 103.3 13.4 63 32-96 120-194 (383)
105 CHL00095 clpC Clp protease ATP 99.3 4.9E-12 1.1E-16 117.5 10.8 129 27-190 196-352 (821)
106 PRK14963 DNA polymerase III su 99.3 2.2E-11 4.7E-16 107.4 14.2 118 32-190 37-186 (504)
107 PRK13341 recombination factor 99.3 8.8E-12 1.9E-16 113.8 11.7 114 32-191 53-180 (725)
108 PRK14964 DNA polymerase III su 99.3 8E-12 1.7E-16 109.3 11.0 119 31-190 35-186 (491)
109 PRK14088 dnaA chromosomal repl 99.3 2E-12 4.3E-17 112.4 7.1 123 32-191 131-275 (440)
110 PRK14087 dnaA chromosomal repl 99.3 3.9E-12 8.4E-17 110.8 8.5 123 32-191 142-287 (450)
111 PRK07764 DNA polymerase III su 99.3 1.1E-11 2.4E-16 114.4 11.9 119 32-191 38-191 (824)
112 TIGR02397 dnaX_nterm DNA polym 99.3 3E-11 6.5E-16 101.8 13.6 120 31-191 36-188 (355)
113 PRK05563 DNA polymerase III su 99.3 4E-11 8.7E-16 107.0 14.2 119 31-190 38-189 (559)
114 PRK12402 replication factor C 99.3 2.4E-11 5.3E-16 101.5 12.1 118 33-191 38-196 (337)
115 PRK14957 DNA polymerase III su 99.3 1.8E-11 3.9E-16 108.4 11.7 118 32-190 39-189 (546)
116 TIGR00678 holB DNA polymerase 99.3 4.2E-11 9.1E-16 92.6 11.9 119 31-190 14-166 (188)
117 PF07728 AAA_5: AAA domain (dy 99.3 3.2E-12 7E-17 94.0 5.4 63 33-95 1-78 (139)
118 PRK14952 DNA polymerase III su 99.3 2.4E-11 5.1E-16 108.5 11.8 118 32-190 36-188 (584)
119 PRK14951 DNA polymerase III su 99.3 1.8E-11 3.8E-16 109.8 11.0 118 32-190 39-194 (618)
120 PRK08691 DNA polymerase III su 99.3 1.4E-11 3E-16 110.9 10.2 120 31-191 38-190 (709)
121 PRK14969 DNA polymerase III su 99.3 1.4E-11 3.1E-16 109.2 9.7 118 32-190 39-189 (527)
122 COG0542 clpA ATP-binding subun 99.3 1.6E-11 3.4E-16 111.5 9.9 127 33-192 523-705 (786)
123 PRK14959 DNA polymerase III su 99.3 2.1E-11 4.5E-16 109.1 10.5 118 32-190 39-189 (624)
124 KOG0989 Replication factor C, 99.3 1.7E-11 3.6E-16 100.0 8.5 116 32-188 58-197 (346)
125 COG1219 ClpX ATP-dependent pro 99.3 1.1E-10 2.3E-15 95.9 13.1 65 32-96 98-176 (408)
126 TIGR02902 spore_lonB ATP-depen 99.3 7.2E-11 1.6E-15 104.9 12.2 128 31-191 86-275 (531)
127 PRK00440 rfc replication facto 99.3 1.8E-10 3.9E-15 95.5 13.8 118 33-191 40-173 (319)
128 PRK06620 hypothetical protein; 99.2 1.7E-11 3.7E-16 96.9 7.1 106 32-191 45-159 (214)
129 PRK14970 DNA polymerase III su 99.2 2E-10 4.3E-15 97.7 13.9 119 31-190 39-178 (367)
130 PRK05896 DNA polymerase III su 99.2 4.1E-11 8.8E-16 106.7 10.0 119 31-190 38-189 (605)
131 PRK07133 DNA polymerase III su 99.2 7.9E-11 1.7E-15 106.8 11.5 119 31-190 40-188 (725)
132 PRK14953 DNA polymerase III su 99.2 1E-10 2.2E-15 102.7 11.6 119 31-190 38-189 (486)
133 PRK14965 DNA polymerase III su 99.2 6.8E-11 1.5E-15 105.9 9.8 119 31-190 38-189 (576)
134 PRK14948 DNA polymerase III su 99.2 1.7E-10 3.7E-15 104.0 12.3 117 32-189 39-190 (620)
135 PRK09087 hypothetical protein; 99.2 6.6E-11 1.4E-15 94.4 8.4 111 33-191 46-165 (226)
136 PRK09111 DNA polymerase III su 99.2 1.5E-10 3.3E-15 103.8 11.6 119 31-190 46-202 (598)
137 PRK14955 DNA polymerase III su 99.2 8.5E-11 1.8E-15 101.0 9.3 119 31-190 38-197 (397)
138 TIGR03345 VI_ClpV1 type VI sec 99.2 2.6E-10 5.7E-15 106.1 12.3 123 34-191 599-779 (852)
139 PRK08451 DNA polymerase III su 99.2 3.4E-10 7.3E-15 100.1 12.0 119 31-190 36-187 (535)
140 PRK13531 regulatory ATPase Rav 99.2 3.7E-10 7.9E-15 98.3 11.9 128 30-189 38-191 (498)
141 KOG1969 DNA replication checkp 99.2 5E-10 1.1E-14 100.2 12.9 129 28-186 323-475 (877)
142 PRK06305 DNA polymerase III su 99.2 3E-10 6.5E-15 99.1 11.2 119 31-190 39-191 (451)
143 PRK14954 DNA polymerase III su 99.1 4.2E-10 9.2E-15 101.2 11.9 119 31-190 38-197 (620)
144 PRK14950 DNA polymerase III su 99.1 4E-10 8.6E-15 101.3 11.5 118 32-190 39-190 (585)
145 PRK06647 DNA polymerase III su 99.1 3.8E-10 8.2E-15 100.7 11.2 119 31-190 38-189 (563)
146 PRK13407 bchI magnesium chelat 99.1 2.2E-10 4.7E-15 96.2 9.0 124 32-190 30-214 (334)
147 CHL00095 clpC Clp protease ATP 99.1 7.7E-10 1.7E-14 103.0 13.2 126 33-191 541-731 (821)
148 PRK10865 protein disaggregatio 99.1 8.5E-10 1.8E-14 102.9 13.3 127 33-192 600-779 (857)
149 TIGR02903 spore_lon_C ATP-depe 99.1 1.2E-09 2.7E-14 98.6 13.7 128 30-191 174-365 (615)
150 TIGR03346 chaperone_ClpB ATP-d 99.1 1.3E-09 2.8E-14 101.8 13.3 125 33-191 597-775 (852)
151 PRK05707 DNA polymerase III su 99.1 1.3E-09 2.7E-14 91.5 11.9 119 31-190 22-176 (328)
152 PRK08116 hypothetical protein; 99.1 9.1E-10 2E-14 90.0 10.8 63 31-93 114-189 (268)
153 PF07726 AAA_3: ATPase family 99.1 9E-11 1.9E-15 85.0 4.1 105 34-170 2-129 (131)
154 PF07724 AAA_2: AAA domain (Cd 99.1 9.2E-11 2E-15 89.7 4.3 65 32-96 4-82 (171)
155 CHL00081 chlI Mg-protoporyphyr 99.1 1.2E-09 2.5E-14 92.1 11.2 77 82-190 144-230 (350)
156 KOG0745 Putative ATP-dependent 99.1 9.5E-10 2.1E-14 93.6 10.4 132 32-181 227-388 (564)
157 COG0464 SpoVK ATPases of the A 99.1 1.2E-09 2.6E-14 96.3 11.6 145 17-190 4-161 (494)
158 PRK14971 DNA polymerase III su 99.1 1.4E-09 3E-14 98.1 12.0 119 31-190 39-191 (614)
159 PF13177 DNA_pol3_delta2: DNA 99.1 4.4E-09 9.6E-14 79.7 12.1 109 31-180 19-162 (162)
160 COG0593 DnaA ATPase involved i 99.0 4.6E-10 1E-14 95.9 7.4 121 33-190 115-255 (408)
161 COG2812 DnaX DNA polymerase II 99.0 7.2E-10 1.6E-14 97.2 8.3 119 32-191 39-190 (515)
162 smart00382 AAA ATPases associa 99.0 3.1E-09 6.6E-14 76.2 10.1 65 32-96 3-92 (148)
163 PRK09112 DNA polymerase III su 99.0 1.2E-08 2.5E-13 86.5 15.0 118 32-190 46-211 (351)
164 PRK06964 DNA polymerase III su 99.0 8.8E-09 1.9E-13 86.7 13.9 120 30-190 20-202 (342)
165 COG0470 HolB ATPase involved i 99.0 2.7E-09 5.9E-14 88.5 10.8 114 33-187 26-176 (325)
166 PRK08181 transposase; Validate 99.0 2E-09 4.3E-14 87.9 9.7 65 31-95 106-180 (269)
167 COG0542 clpA ATP-binding subun 99.0 2.4E-09 5.2E-14 97.5 11.1 130 26-189 186-343 (786)
168 TIGR02974 phageshock_pspF psp 99.0 2.6E-09 5.6E-14 89.7 10.6 64 32-96 23-107 (329)
169 PF12775 AAA_7: P-loop contain 99.0 3.5E-10 7.5E-15 92.6 5.2 133 31-191 33-192 (272)
170 TIGR02030 BchI-ChlI magnesium 99.0 2.1E-09 4.6E-14 90.3 10.0 76 82-190 131-217 (337)
171 PRK07471 DNA polymerase III su 99.0 7.9E-09 1.7E-13 87.9 13.0 119 31-190 41-211 (365)
172 COG1220 HslU ATP-dependent pro 99.0 1.3E-08 2.8E-13 84.4 12.6 38 31-68 50-87 (444)
173 PF06068 TIP49: TIP49 C-termin 99.0 1.5E-08 3.3E-13 85.2 12.8 39 30-68 49-89 (398)
174 PRK08058 DNA polymerase III su 99.0 1E-08 2.2E-13 86.1 11.7 118 31-189 28-179 (329)
175 PRK11331 5-methylcytosine-spec 99.0 2E-08 4.4E-13 86.8 13.7 26 31-56 194-219 (459)
176 PF14532 Sigma54_activ_2: Sigm 98.9 2.3E-09 5E-14 78.9 6.5 59 32-96 22-83 (138)
177 PRK12377 putative replication 98.9 3.7E-09 8.1E-14 85.4 8.2 63 32-94 102-175 (248)
178 PRK05564 DNA polymerase III su 98.9 3.5E-08 7.5E-13 82.3 14.3 119 31-190 26-163 (313)
179 PRK11608 pspF phage shock prot 98.9 1.8E-08 4E-13 84.5 11.8 64 32-96 30-114 (326)
180 PRK08699 DNA polymerase III su 98.9 2.4E-08 5.2E-13 83.7 12.2 118 31-189 21-182 (325)
181 TIGR01817 nifA Nif-specific re 98.9 1.6E-08 3.4E-13 90.2 11.8 64 32-96 220-304 (534)
182 PRK06835 DNA replication prote 98.9 8.9E-09 1.9E-13 86.4 9.6 64 32-95 184-259 (329)
183 PF13173 AAA_14: AAA domain 98.9 2E-08 4.4E-13 72.9 10.2 64 32-95 3-74 (128)
184 PRK04132 replication factor C 98.9 1.6E-08 3.4E-13 93.6 11.1 115 35-190 568-700 (846)
185 PRK06871 DNA polymerase III su 98.9 2.4E-08 5.3E-13 83.5 11.3 118 31-189 24-176 (325)
186 PRK06921 hypothetical protein; 98.9 1.9E-08 4.2E-13 82.1 10.3 63 31-93 117-188 (266)
187 TIGR02442 Cob-chelat-sub cobal 98.9 1.3E-08 2.8E-13 92.3 10.2 124 32-190 26-212 (633)
188 PF00158 Sigma54_activat: Sigm 98.9 1.1E-08 2.4E-13 78.0 8.3 64 32-96 23-107 (168)
189 PRK07952 DNA replication prote 98.9 2.1E-08 4.5E-13 80.9 10.0 64 32-95 100-175 (244)
190 PF01695 IstB_IS21: IstB-like 98.9 1.9E-09 4.1E-14 83.0 3.5 65 30-94 46-120 (178)
191 TIGR03015 pepcterm_ATPase puta 98.8 1E-07 2.2E-12 77.3 13.6 24 33-56 45-68 (269)
192 PRK08769 DNA polymerase III su 98.8 4.5E-08 9.7E-13 81.8 11.5 118 31-189 26-182 (319)
193 PRK06090 DNA polymerase III su 98.8 7.6E-08 1.6E-12 80.4 12.2 118 31-189 25-177 (319)
194 PF05729 NACHT: NACHT domain 98.8 7E-08 1.5E-12 72.0 10.7 130 33-192 2-163 (166)
195 PRK07993 DNA polymerase III su 98.8 5.4E-08 1.2E-12 81.9 11.0 118 31-189 24-177 (334)
196 PRK07399 DNA polymerase III su 98.8 8E-08 1.7E-12 80.2 11.9 117 32-190 27-193 (314)
197 PRK08939 primosomal protein Dn 98.8 2.2E-08 4.8E-13 83.3 8.5 65 30-94 155-229 (306)
198 smart00350 MCM minichromosome 98.8 1.6E-08 3.5E-13 89.6 8.1 126 33-191 238-399 (509)
199 PRK06526 transposase; Provisio 98.8 6.9E-09 1.5E-13 84.1 5.0 65 31-95 98-172 (254)
200 PF12774 AAA_6: Hydrolytic ATP 98.8 3.4E-08 7.4E-13 79.0 8.9 67 30-96 31-98 (231)
201 PRK15424 propionate catabolism 98.8 4.1E-08 8.9E-13 87.2 10.0 64 32-96 243-336 (538)
202 PF13401 AAA_22: AAA domain; P 98.8 2.8E-08 6E-13 71.8 7.5 38 32-69 5-50 (131)
203 TIGR02031 BchD-ChlD magnesium 98.8 3.3E-08 7.1E-13 89.0 9.3 127 32-191 17-173 (589)
204 TIGR00602 rad24 checkpoint pro 98.8 6.3E-08 1.4E-12 87.4 10.9 28 32-59 111-138 (637)
205 KOG0991 Replication factor C, 98.8 3.9E-08 8.5E-13 78.0 8.0 63 33-95 50-126 (333)
206 PF01078 Mg_chelatase: Magnesi 98.8 1.7E-08 3.7E-13 78.9 5.9 24 32-55 23-46 (206)
207 KOG1514 Origin recognition com 98.7 1.5E-07 3.3E-12 84.2 12.4 122 33-191 424-588 (767)
208 PRK11388 DNA-binding transcrip 98.7 1.3E-07 2.8E-12 86.0 12.3 64 32-96 349-430 (638)
209 PRK05022 anaerobic nitric oxid 98.7 1.3E-07 2.8E-12 83.9 12.0 65 31-96 210-295 (509)
210 KOG0741 AAA+-type ATPase [Post 98.7 1.5E-07 3.2E-12 82.2 11.3 130 32-190 539-684 (744)
211 COG1221 PspF Transcriptional r 98.7 9.3E-08 2E-12 81.7 9.8 121 31-181 101-251 (403)
212 TIGR02329 propionate_PrpR prop 98.7 1.3E-07 2.8E-12 84.0 11.1 64 32-96 236-321 (526)
213 PF01637 Arch_ATPase: Archaeal 98.7 3.8E-07 8.3E-12 71.6 12.7 25 32-56 21-45 (234)
214 PRK15429 formate hydrogenlyase 98.7 1.3E-07 2.7E-12 86.8 10.7 64 32-96 400-484 (686)
215 PF00910 RNA_helicase: RNA hel 98.7 3.4E-08 7.4E-13 69.7 5.2 63 34-96 1-63 (107)
216 PRK10820 DNA-binding transcrip 98.7 2.8E-07 6E-12 82.0 12.1 64 32-96 228-312 (520)
217 COG1484 DnaC DNA replication p 98.7 9E-08 2E-12 77.6 7.7 66 30-95 104-180 (254)
218 PF05621 TniB: Bacterial TniB 98.6 2.7E-07 5.8E-12 76.0 9.7 83 7-96 43-159 (302)
219 PRK09183 transposase/IS protei 98.6 1.1E-07 2.4E-12 77.4 7.0 65 31-95 102-177 (259)
220 KOG2227 Pre-initiation complex 98.6 5.1E-07 1.1E-11 77.8 10.8 126 29-191 173-337 (529)
221 COG1239 ChlI Mg-chelatase subu 98.5 7.8E-07 1.7E-11 75.9 10.3 127 32-190 39-230 (423)
222 PRK10923 glnG nitrogen regulat 98.5 1.3E-06 2.9E-11 76.5 12.1 64 32-96 162-246 (469)
223 PF00931 NB-ARC: NB-ARC domain 98.5 1.4E-06 3.1E-11 71.1 11.5 118 31-191 19-169 (287)
224 COG1116 TauB ABC-type nitrate/ 98.5 2.6E-07 5.7E-12 73.8 6.6 29 27-55 23-53 (248)
225 KOG2035 Replication factor C, 98.5 8.4E-07 1.8E-11 72.0 9.3 117 33-190 36-197 (351)
226 PHA02624 large T antigen; Prov 98.5 1.4E-06 3.1E-11 77.7 11.1 127 27-178 427-561 (647)
227 TIGR01818 ntrC nitrogen regula 98.5 1.9E-06 4.1E-11 75.3 11.7 64 32-96 158-242 (463)
228 COG5245 DYN1 Dynein, heavy cha 98.4 7.6E-07 1.7E-11 85.3 8.7 143 28-192 1491-1658(3164)
229 TIGR00368 Mg chelatase-related 98.4 9.3E-07 2E-11 78.1 8.7 24 32-55 212-235 (499)
230 PF13604 AAA_30: AAA domain; P 98.4 3.7E-06 8E-11 65.6 11.2 81 1-96 2-107 (196)
231 PF03969 AFG1_ATPase: AFG1-lik 98.4 1.7E-06 3.7E-11 73.6 9.9 67 28-94 59-139 (362)
232 KOG1970 Checkpoint RAD17-RFC c 98.4 8.1E-06 1.8E-10 71.7 13.6 51 10-63 91-142 (634)
233 PHA00729 NTP-binding motif con 98.4 9.4E-07 2E-11 70.2 7.0 26 32-57 18-43 (226)
234 PF13207 AAA_17: AAA domain; P 98.4 3.3E-07 7.2E-12 65.3 4.1 31 34-64 2-32 (121)
235 TIGR02915 PEP_resp_reg putativ 98.4 3.9E-06 8.5E-11 73.0 11.0 64 32-96 163-247 (445)
236 KOG1942 DNA helicase, TBP-inte 98.3 1.2E-05 2.5E-10 66.2 12.0 25 31-55 64-88 (456)
237 PTZ00111 DNA replication licen 98.3 1.5E-06 3.3E-11 80.7 7.7 126 33-190 494-655 (915)
238 PRK15115 response regulator Gl 98.3 3.4E-06 7.4E-11 73.3 9.4 64 32-96 158-242 (444)
239 PRK05917 DNA polymerase III su 98.3 1.7E-05 3.6E-10 65.5 12.3 108 31-179 19-154 (290)
240 COG3267 ExeA Type II secretory 98.3 8.6E-06 1.9E-10 65.4 9.8 128 28-190 47-211 (269)
241 PRK13406 bchD magnesium chelat 98.3 5.2E-06 1.1E-10 74.6 9.3 121 32-184 26-174 (584)
242 PRK00131 aroK shikimate kinase 98.2 1.4E-06 3.1E-11 65.7 4.7 34 30-63 3-36 (175)
243 COG2204 AtoC Response regulato 98.2 1.1E-05 2.3E-10 70.4 10.3 64 32-96 165-249 (464)
244 PRK11361 acetoacetate metaboli 98.2 1.1E-05 2.3E-10 70.3 10.6 64 32-96 167-251 (457)
245 COG0606 Predicted ATPase with 98.2 2.6E-06 5.6E-11 73.8 6.0 25 31-55 198-222 (490)
246 COG4619 ABC-type uncharacteriz 98.2 7E-06 1.5E-10 62.4 7.6 23 33-55 31-53 (223)
247 KOG0990 Replication factor C, 98.2 4.6E-07 1E-11 74.7 1.3 117 33-190 64-201 (360)
248 smart00763 AAA_PrkA PrkA AAA d 98.2 4E-06 8.8E-11 70.9 7.0 34 31-64 78-118 (361)
249 PLN03210 Resistant to P. syrin 98.2 2.3E-05 5E-10 75.9 13.0 26 32-57 208-233 (1153)
250 COG1224 TIP49 DNA helicase TIP 98.2 2.9E-06 6.2E-11 71.2 5.9 53 28-80 62-121 (450)
251 COG5271 MDN1 AAA ATPase contai 98.2 1.6E-05 3.4E-10 77.5 11.2 127 32-191 1544-1702(4600)
252 PRK08154 anaerobic benzoate ca 98.2 5.3E-06 1.1E-10 69.2 6.9 58 1-63 108-165 (309)
253 PRK07276 DNA polymerase III su 98.2 4.6E-05 9.9E-10 63.0 12.2 114 31-188 24-171 (290)
254 PRK08118 topology modulation p 98.2 2E-06 4.3E-11 65.5 3.9 32 33-64 3-34 (167)
255 KOG1051 Chaperone HSP104 and r 98.2 1.5E-05 3.3E-10 74.1 10.3 97 31-157 591-707 (898)
256 PRK05818 DNA polymerase III su 98.2 4.7E-05 1E-09 61.7 11.9 109 30-179 6-147 (261)
257 PRK07132 DNA polymerase III su 98.1 2E-05 4.4E-10 65.4 9.7 117 32-189 19-159 (299)
258 PRK09862 putative ATP-dependen 98.1 1.4E-05 3E-10 70.7 8.9 24 32-55 211-234 (506)
259 PRK03839 putative kinase; Prov 98.1 3.3E-06 7.2E-11 64.6 4.1 30 34-63 3-32 (180)
260 COG1618 Predicted nucleotide k 98.1 1.1E-05 2.3E-10 60.7 6.5 23 33-55 7-29 (179)
261 PRK13947 shikimate kinase; Pro 98.1 4E-06 8.7E-11 63.4 4.3 32 33-64 3-34 (171)
262 PF14516 AAA_35: AAA-like doma 98.1 0.0001 2.2E-09 62.0 13.2 131 32-191 32-213 (331)
263 PF03215 Rad17: Rad17 cell cyc 98.1 8.9E-06 1.9E-10 72.2 7.0 49 10-62 28-76 (519)
264 PRK00625 shikimate kinase; Pro 98.1 4.3E-06 9.3E-11 64.0 4.1 32 33-64 2-33 (173)
265 cd01120 RecA-like_NTPases RecA 98.1 1.3E-05 2.9E-10 59.2 6.7 63 34-96 2-99 (165)
266 PF13671 AAA_33: AAA domain; P 98.1 3.6E-06 7.8E-11 61.6 3.6 28 34-61 2-29 (143)
267 PRK10365 transcriptional regul 98.1 3.1E-05 6.7E-10 67.1 9.9 64 32-96 163-247 (441)
268 KOG3347 Predicted nucleotide k 98.1 4.3E-06 9.4E-11 62.0 3.7 32 32-63 8-39 (176)
269 cd00464 SK Shikimate kinase (S 98.1 5.4E-06 1.2E-10 61.4 4.3 31 33-63 1-31 (154)
270 KOG2170 ATPase of the AAA+ sup 98.0 2.3E-05 4.9E-10 64.4 8.0 86 5-96 90-192 (344)
271 KOG2228 Origin recognition com 98.0 6.7E-05 1.4E-09 62.7 10.7 123 31-191 49-218 (408)
272 KOG2543 Origin recognition com 98.0 7.4E-05 1.6E-09 63.3 10.7 124 31-190 30-191 (438)
273 COG0703 AroK Shikimate kinase 98.0 5.4E-06 1.2E-10 63.1 3.5 33 32-64 3-35 (172)
274 PRK13949 shikimate kinase; Pro 98.0 6.3E-06 1.4E-10 62.8 3.9 32 33-64 3-34 (169)
275 TIGR03499 FlhF flagellar biosy 98.0 4.9E-05 1.1E-09 62.6 9.4 35 32-66 195-234 (282)
276 PRK12723 flagellar biosynthesi 98.0 0.00014 3E-09 62.5 12.3 65 31-95 174-267 (388)
277 TIGR01359 UMP_CMP_kin_fam UMP- 98.0 7.3E-06 1.6E-10 62.7 4.1 29 34-62 2-30 (183)
278 COG1373 Predicted ATPase (AAA+ 98.0 0.00019 4.2E-09 61.9 13.2 64 33-96 39-108 (398)
279 PRK14532 adenylate kinase; Pro 98.0 7.3E-06 1.6E-10 63.1 4.1 30 33-62 2-31 (188)
280 PRK14531 adenylate kinase; Pro 98.0 9.1E-06 2E-10 62.6 4.4 31 32-62 3-33 (183)
281 PF06309 Torsin: Torsin; Inte 98.0 1.5E-05 3.2E-10 57.7 5.0 45 5-55 33-77 (127)
282 PRK07261 topology modulation p 98.0 9.1E-06 2E-10 62.0 4.1 31 34-64 3-33 (171)
283 PF05707 Zot: Zonular occluden 98.0 5E-05 1.1E-09 59.0 8.3 110 34-177 3-144 (193)
284 TIGR01618 phage_P_loop phage n 97.9 7.1E-06 1.5E-10 65.1 3.3 22 32-53 13-34 (220)
285 TIGR02012 tigrfam_recA protein 97.9 5.5E-05 1.2E-09 63.3 8.7 69 28-96 52-147 (321)
286 PRK13948 shikimate kinase; Pro 97.9 1.4E-05 3E-10 61.8 4.6 34 30-63 9-42 (182)
287 PRK06217 hypothetical protein; 97.9 1.1E-05 2.4E-10 62.0 4.2 31 33-63 3-33 (183)
288 COG4650 RtcR Sigma54-dependent 97.9 4.5E-05 9.8E-10 62.9 7.8 66 31-96 208-296 (531)
289 PRK14530 adenylate kinase; Pro 97.9 1.2E-05 2.7E-10 63.3 4.4 30 33-62 5-34 (215)
290 cd01428 ADK Adenylate kinase ( 97.9 1.1E-05 2.5E-10 62.0 4.1 29 34-62 2-30 (194)
291 cd02020 CMPK Cytidine monophos 97.9 1.3E-05 2.8E-10 58.8 4.0 30 34-63 2-31 (147)
292 PHA02774 E1; Provisional 97.9 5.8E-05 1.2E-09 67.4 8.5 58 27-91 430-488 (613)
293 PF07693 KAP_NTPase: KAP famil 97.9 0.00025 5.4E-09 59.0 11.9 30 29-58 18-47 (325)
294 TIGR01313 therm_gnt_kin carboh 97.9 1.3E-05 2.7E-10 60.3 3.7 29 34-62 1-29 (163)
295 cd02021 GntK Gluconate kinase 97.9 1.5E-05 3.2E-10 59.1 4.0 28 34-61 2-29 (150)
296 PF13086 AAA_11: AAA domain; P 97.9 2E-05 4.3E-10 61.8 4.8 22 34-55 20-41 (236)
297 cd01128 rho_factor Transcripti 97.9 5.9E-05 1.3E-09 61.1 7.5 26 32-57 17-42 (249)
298 PRK06696 uridine kinase; Valid 97.9 4.7E-05 1E-09 60.4 6.9 59 5-69 2-63 (223)
299 PRK11823 DNA repair protein Ra 97.9 0.00014 3E-09 63.7 10.3 68 27-96 76-170 (446)
300 PRK05057 aroK shikimate kinase 97.9 2.3E-05 4.9E-10 59.9 4.7 34 31-64 4-37 (172)
301 TIGR02688 conserved hypothetic 97.8 2.9E-05 6.4E-10 66.9 5.7 60 31-95 209-273 (449)
302 cd03283 ABC_MutS-like MutS-lik 97.8 0.00012 2.5E-09 57.3 8.7 67 28-94 22-117 (199)
303 cd01121 Sms Sms (bacterial rad 97.8 0.00014 3.1E-09 62.1 9.8 68 28-96 79-172 (372)
304 PF05970 PIF1: PIF1-like helic 97.8 5E-05 1.1E-09 64.7 7.1 47 1-57 2-48 (364)
305 PRK05800 cobU adenosylcobinami 97.8 5E-05 1.1E-09 58.0 6.4 36 33-68 3-38 (170)
306 PTZ00088 adenylate kinase 1; P 97.8 2.3E-05 5E-10 62.7 4.7 31 33-63 8-38 (229)
307 cd01393 recA_like RecA is a b 97.8 0.0002 4.4E-09 56.5 9.8 40 27-66 15-63 (226)
308 PRK03731 aroL shikimate kinase 97.8 2.6E-05 5.5E-10 59.1 4.4 31 33-63 4-34 (171)
309 TIGR01360 aden_kin_iso1 adenyl 97.8 2.3E-05 5E-10 59.9 4.2 30 33-62 5-34 (188)
310 PRK08233 hypothetical protein; 97.8 0.00014 3.1E-09 55.2 8.6 30 33-62 5-35 (182)
311 COG1125 OpuBA ABC-type proline 97.8 1.5E-05 3.4E-10 64.2 3.3 37 19-55 13-51 (309)
312 COG1102 Cmk Cytidylate kinase 97.8 2.1E-05 4.5E-10 59.2 3.7 28 34-61 3-30 (179)
313 PRK13946 shikimate kinase; Pro 97.8 2.1E-05 4.6E-10 60.6 3.9 34 31-64 10-43 (184)
314 COG3829 RocR Transcriptional r 97.8 0.00012 2.5E-09 64.6 8.7 65 31-96 268-354 (560)
315 PLN02200 adenylate kinase fami 97.8 2.9E-05 6.2E-10 62.3 4.6 30 32-61 44-73 (234)
316 PRK10536 hypothetical protein; 97.8 0.00021 4.6E-09 57.9 9.6 23 32-54 75-97 (262)
317 PRK06762 hypothetical protein; 97.8 3.3E-05 7.2E-10 58.2 4.6 32 32-63 3-34 (166)
318 cd00983 recA RecA is a bacter 97.8 0.00012 2.7E-09 61.3 8.3 69 28-96 52-147 (325)
319 cd00227 CPT Chloramphenicol (C 97.8 2.2E-05 4.7E-10 59.9 3.6 29 32-60 3-31 (175)
320 PF10443 RNA12: RNA12 protein; 97.8 0.00038 8.2E-09 60.0 11.4 40 150-191 183-228 (431)
321 PRK14528 adenylate kinase; Pro 97.8 2.8E-05 6.1E-10 60.1 4.2 30 33-62 3-32 (186)
322 PRK02496 adk adenylate kinase; 97.8 2.5E-05 5.5E-10 59.9 3.9 29 34-62 4-32 (184)
323 PRK08533 flagellar accessory p 97.8 0.00032 7E-09 56.0 10.4 38 27-64 20-60 (230)
324 COG3854 SpoIIIAA ncharacterize 97.8 9.8E-05 2.1E-09 58.9 7.1 24 32-55 138-161 (308)
325 TIGR01351 adk adenylate kinase 97.8 2.6E-05 5.7E-10 61.3 3.9 29 34-62 2-30 (210)
326 TIGR02237 recomb_radB DNA repa 97.8 9.7E-05 2.1E-09 57.7 7.1 40 27-66 8-50 (209)
327 COG0563 Adk Adenylate kinase a 97.8 2.9E-05 6.3E-10 59.7 4.0 29 33-61 2-30 (178)
328 PF13191 AAA_16: AAA ATPase do 97.8 2.1E-05 4.6E-10 59.7 3.3 37 31-67 24-63 (185)
329 COG1485 Predicted ATPase [Gene 97.8 4.5E-05 9.7E-10 64.0 5.3 29 30-58 64-92 (367)
330 PLN02199 shikimate kinase 97.8 6.2E-05 1.3E-09 62.2 6.1 34 31-64 102-135 (303)
331 KOG1968 Replication factor C, 97.8 0.0001 2.2E-09 68.9 8.2 118 34-188 360-498 (871)
332 PRK00279 adk adenylate kinase; 97.8 3.2E-05 6.9E-10 61.0 4.2 29 34-62 3-31 (215)
333 PF13245 AAA_19: Part of AAA d 97.7 5.7E-05 1.2E-09 50.0 4.7 33 34-66 13-52 (76)
334 PF06745 KaiC: KaiC; InterPro 97.7 0.00015 3.2E-09 57.5 7.7 40 27-66 15-58 (226)
335 PRK14527 adenylate kinase; Pro 97.7 3.2E-05 6.9E-10 59.8 3.8 33 30-62 5-37 (191)
336 PRK06547 hypothetical protein; 97.7 6.3E-05 1.4E-09 57.5 5.3 33 31-63 15-47 (172)
337 PRK09376 rho transcription ter 97.7 9.4E-05 2E-09 63.3 6.7 23 34-56 172-194 (416)
338 cd03222 ABC_RNaseL_inhibitor T 97.7 0.00025 5.4E-09 54.5 8.3 25 31-55 25-49 (177)
339 COG4088 Predicted nucleotide k 97.7 9.3E-05 2E-09 58.0 5.9 24 34-57 4-27 (261)
340 PF13238 AAA_18: AAA domain; P 97.7 3.4E-05 7.3E-10 55.0 3.3 22 34-55 1-22 (129)
341 cd00544 CobU Adenosylcobinamid 97.7 0.00022 4.7E-09 54.4 7.8 63 34-96 2-87 (169)
342 COG3604 FhlA Transcriptional r 97.7 0.00015 3.2E-09 63.4 7.6 65 32-96 247-331 (550)
343 PF00493 MCM: MCM2/3/5 family 97.7 2.8E-05 6.2E-10 65.4 3.1 126 33-190 59-219 (331)
344 KOG0478 DNA replication licens 97.7 0.00011 2.3E-09 66.3 6.5 65 32-96 463-540 (804)
345 PF10236 DAP3: Mitochondrial r 97.7 0.0018 3.9E-08 54.0 13.7 27 29-55 21-48 (309)
346 TIGR02768 TraA_Ti Ti-type conj 97.7 0.00037 8E-09 64.7 10.3 64 32-95 369-452 (744)
347 PF00406 ADK: Adenylate kinase 97.6 4.3E-05 9.4E-10 56.8 3.3 27 36-62 1-27 (151)
348 PRK14722 flhF flagellar biosyn 97.6 0.00022 4.7E-09 60.9 7.8 64 31-94 137-227 (374)
349 PF04665 Pox_A32: Poxvirus A32 97.6 0.00098 2.1E-08 53.6 11.1 27 30-56 12-38 (241)
350 TIGR00150 HI0065_YjeE ATPase, 97.6 0.00011 2.3E-09 53.9 5.1 28 31-58 22-49 (133)
351 COG1936 Predicted nucleotide k 97.6 4.5E-05 9.7E-10 58.0 3.2 30 33-63 2-31 (180)
352 PRK15455 PrkA family serine pr 97.6 9.7E-05 2.1E-09 66.0 5.7 51 8-62 83-135 (644)
353 PRK04182 cytidylate kinase; Pr 97.6 6E-05 1.3E-09 57.1 3.9 28 34-61 3-30 (180)
354 PRK06581 DNA polymerase III su 97.6 0.0014 3.1E-08 52.7 11.7 131 11-190 3-159 (263)
355 PRK04040 adenylate kinase; Pro 97.6 7.4E-05 1.6E-09 57.9 4.3 29 32-60 3-33 (188)
356 PRK01184 hypothetical protein; 97.6 6.5E-05 1.4E-09 57.6 3.9 29 33-62 3-31 (184)
357 PRK04296 thymidine kinase; Pro 97.6 0.00037 8E-09 54.0 8.1 30 33-62 4-36 (190)
358 TIGR03877 thermo_KaiC_1 KaiC d 97.6 0.00037 7.9E-09 55.9 8.3 63 27-91 17-90 (237)
359 cd02019 NK Nucleoside/nucleoti 97.6 9.2E-05 2E-09 47.9 3.9 22 34-55 2-23 (69)
360 COG4608 AppF ABC-type oligopep 97.6 0.00025 5.3E-09 57.6 7.1 27 31-57 39-65 (268)
361 PRK14526 adenylate kinase; Pro 97.6 7.7E-05 1.7E-09 58.9 4.1 28 34-61 3-30 (211)
362 PRK09354 recA recombinase A; P 97.6 0.00043 9.3E-09 58.6 8.8 69 28-96 57-152 (349)
363 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.6 0.00055 1.2E-08 50.6 8.4 62 32-96 27-102 (144)
364 TIGR01448 recD_rel helicase, p 97.6 0.00043 9.3E-09 64.0 9.4 24 32-55 339-362 (720)
365 PHA02530 pseT polynucleotide k 97.6 7.6E-05 1.6E-09 61.6 4.1 29 33-61 4-33 (300)
366 cd01124 KaiC KaiC is a circadi 97.6 0.00023 5.1E-09 54.3 6.5 32 34-65 2-36 (187)
367 PLN02674 adenylate kinase 97.6 0.00018 4E-09 58.0 6.1 31 32-62 32-62 (244)
368 PF13521 AAA_28: AAA domain; P 97.6 6.8E-05 1.5E-09 56.4 3.4 26 34-60 2-27 (163)
369 cd03243 ABC_MutS_homologs The 97.6 0.00063 1.4E-08 53.1 9.0 64 32-95 30-121 (202)
370 COG0467 RAD55 RecA-superfamily 97.6 0.00045 9.7E-09 56.0 8.4 52 27-80 19-73 (260)
371 TIGR02173 cyt_kin_arch cytidyl 97.6 8.7E-05 1.9E-09 55.8 4.0 29 34-62 3-31 (171)
372 PF08433 KTI12: Chromatin asso 97.6 0.00016 3.4E-09 59.3 5.6 62 34-95 4-83 (270)
373 PRK04841 transcriptional regul 97.5 0.0019 4.2E-08 60.8 13.5 46 18-64 18-64 (903)
374 KOG3928 Mitochondrial ribosome 97.5 0.0015 3.2E-08 56.0 11.4 33 32-64 180-213 (461)
375 PRK12608 transcription termina 97.5 0.00032 7E-09 59.8 7.2 23 34-56 136-158 (380)
376 TIGR00767 rho transcription te 97.5 0.00034 7.3E-09 60.2 7.4 23 34-56 171-193 (415)
377 TIGR00416 sms DNA repair prote 97.5 0.001 2.2E-08 58.4 10.6 68 28-96 91-184 (454)
378 TIGR03881 KaiC_arch_4 KaiC dom 97.5 0.00062 1.4E-08 53.9 8.6 63 27-91 16-89 (229)
379 cd01853 Toc34_like Toc34-like 97.5 0.0021 4.5E-08 52.1 11.6 25 30-54 30-54 (249)
380 PRK04328 hypothetical protein; 97.5 0.00056 1.2E-08 55.3 8.4 52 27-80 19-73 (249)
381 PF02562 PhoH: PhoH-like prote 97.5 0.00014 3E-09 57.2 4.5 24 32-55 20-43 (205)
382 TIGR00064 ftsY signal recognit 97.5 0.00072 1.6E-08 55.4 8.9 37 31-67 72-111 (272)
383 cd00267 ABC_ATPase ABC (ATP-bi 97.5 0.00068 1.5E-08 50.6 8.1 25 32-56 26-50 (157)
384 TIGR02655 circ_KaiC circadian 97.5 0.00046 1E-08 61.0 8.3 53 27-81 17-73 (484)
385 PRK13889 conjugal transfer rel 97.5 0.0011 2.3E-08 63.2 11.0 64 33-96 364-447 (988)
386 COG4525 TauB ABC-type taurine 97.5 0.00072 1.6E-08 52.8 8.2 24 32-55 32-55 (259)
387 PRK00771 signal recognition pa 97.5 0.00052 1.1E-08 59.9 8.3 37 31-67 95-134 (437)
388 PF12780 AAA_8: P-loop contain 97.5 0.0004 8.6E-09 56.8 7.2 63 32-94 32-101 (268)
389 PRK09361 radB DNA repair and r 97.5 0.00042 9.2E-09 54.8 7.1 39 27-65 19-60 (225)
390 cd02027 APSK Adenosine 5'-phos 97.5 0.00018 3.8E-09 53.6 4.6 30 34-63 2-34 (149)
391 PRK10078 ribose 1,5-bisphospho 97.5 0.00011 2.4E-09 56.6 3.6 28 33-60 4-31 (186)
392 smart00534 MUTSac ATPase domai 97.5 0.00094 2E-08 51.4 8.7 62 34-95 2-91 (185)
393 PRK14529 adenylate kinase; Pro 97.5 0.00011 2.4E-09 58.5 3.6 29 33-61 2-30 (223)
394 cd01394 radB RadB. The archaea 97.5 0.00038 8.2E-09 54.8 6.6 39 27-65 15-56 (218)
395 cd03280 ABC_MutS2 MutS2 homolo 97.5 0.00074 1.6E-08 52.6 8.2 20 33-52 30-49 (200)
396 cd03281 ABC_MSH5_euk MutS5 hom 97.5 0.00024 5.3E-09 56.1 5.4 22 32-53 30-51 (213)
397 PRK05973 replicative DNA helic 97.5 0.00044 9.6E-09 55.5 6.9 39 27-65 60-101 (237)
398 PRK05703 flhF flagellar biosyn 97.4 0.0011 2.4E-08 57.6 9.9 35 32-66 222-261 (424)
399 cd03216 ABC_Carb_Monos_I This 97.4 0.00085 1.8E-08 50.6 8.1 25 31-55 26-50 (163)
400 TIGR03574 selen_PSTK L-seryl-t 97.4 0.00018 4E-09 57.9 4.5 31 34-64 2-35 (249)
401 PRK04220 2-phosphoglycerate ki 97.4 0.00039 8.4E-09 57.6 6.5 30 30-59 91-120 (301)
402 cd01123 Rad51_DMC1_radA Rad51_ 97.4 0.00052 1.1E-08 54.5 7.0 40 27-66 15-63 (235)
403 COG4175 ProV ABC-type proline/ 97.4 0.00026 5.6E-09 58.9 5.2 64 82-180 182-250 (386)
404 COG1124 DppF ABC-type dipeptid 97.4 0.00035 7.6E-09 55.9 5.7 24 32-55 34-57 (252)
405 KOG1051 Chaperone HSP104 and r 97.4 0.0018 4E-08 60.6 11.1 69 28-96 205-294 (898)
406 PLN02459 probable adenylate ki 97.4 0.00019 4.2E-09 58.3 4.2 30 33-62 31-60 (261)
407 PRK05541 adenylylsulfate kinas 97.4 0.0002 4.2E-09 54.6 4.0 25 32-56 8-32 (176)
408 PRK06067 flagellar accessory p 97.4 0.00071 1.5E-08 53.9 7.3 40 27-66 21-63 (234)
409 cd02022 DPCK Dephospho-coenzym 97.4 0.00021 4.5E-09 54.8 4.0 29 34-63 2-30 (179)
410 COG4178 ABC-type uncharacteriz 97.4 0.00019 4.1E-09 64.4 4.2 26 30-55 418-443 (604)
411 TIGR02322 phosphon_PhnN phosph 97.4 0.00016 3.6E-09 55.0 3.4 25 33-57 3-27 (179)
412 TIGR03878 thermo_KaiC_2 KaiC d 97.4 0.00029 6.3E-09 57.3 4.9 39 27-65 32-73 (259)
413 PRK12339 2-phosphoglycerate ki 97.4 0.00024 5.3E-09 55.5 4.2 28 32-59 4-31 (197)
414 COG2874 FlaH Predicted ATPases 97.4 0.0016 3.4E-08 51.4 8.5 37 19-55 14-52 (235)
415 KOG0058 Peptide exporter, ABC 97.3 0.00042 9E-09 62.9 6.1 25 31-55 494-518 (716)
416 COG1119 ModF ABC-type molybden 97.3 0.0014 3E-08 52.6 8.3 27 29-55 55-81 (257)
417 PF03266 NTPase_1: NTPase; In 97.3 0.00022 4.7E-09 54.4 3.6 22 34-55 2-23 (168)
418 COG1241 MCM2 Predicted ATPase 97.3 0.00035 7.5E-09 63.7 5.3 63 33-95 321-396 (682)
419 COG1120 FepC ABC-type cobalami 97.3 0.001 2.3E-08 53.9 7.6 22 34-55 31-52 (258)
420 PF02367 UPF0079: Uncharacteri 97.3 0.0002 4.2E-09 51.8 3.0 27 32-58 16-42 (123)
421 PF00437 T2SE: Type II/IV secr 97.3 0.00047 1E-08 56.1 5.7 64 31-94 127-209 (270)
422 PF00448 SRP54: SRP54-type pro 97.3 0.00033 7.1E-09 54.7 4.5 36 32-67 2-40 (196)
423 TIGR00991 3a0901s02IAP34 GTP-b 97.3 0.004 8.6E-08 51.9 11.1 22 32-53 39-60 (313)
424 cd01129 PulE-GspE PulE/GspE Th 97.3 0.0017 3.7E-08 53.0 8.9 24 33-56 82-105 (264)
425 PRK13808 adenylate kinase; Pro 97.3 0.00025 5.4E-09 59.6 4.0 29 34-62 3-31 (333)
426 PRK05480 uridine/cytidine kina 97.3 0.00041 8.8E-09 54.3 5.0 25 32-56 7-31 (209)
427 PRK14730 coaE dephospho-CoA ki 97.3 0.00028 6.1E-09 55.0 4.1 30 33-62 3-32 (195)
428 cd03282 ABC_MSH4_euk MutS4 hom 97.3 0.0014 3E-08 51.5 7.9 22 32-53 30-51 (204)
429 PF00485 PRK: Phosphoribulokin 97.3 0.00022 4.8E-09 55.3 3.4 23 34-56 2-24 (194)
430 TIGR02236 recomb_radA DNA repa 97.3 0.00086 1.9E-08 55.8 7.1 39 28-66 92-139 (310)
431 TIGR02858 spore_III_AA stage I 97.3 0.00056 1.2E-08 56.1 5.8 25 32-56 112-136 (270)
432 cd02028 UMPK_like Uridine mono 97.3 0.00037 8E-09 53.5 4.5 33 34-66 2-37 (179)
433 PF01583 APS_kinase: Adenylyls 97.3 0.00068 1.5E-08 51.0 5.7 35 33-67 4-41 (156)
434 TIGR01420 pilT_fam pilus retra 97.3 0.0012 2.5E-08 55.9 7.8 26 31-56 122-147 (343)
435 PRK10416 signal recognition pa 97.3 0.00036 7.7E-09 58.5 4.6 34 32-65 115-151 (318)
436 PF13479 AAA_24: AAA domain 97.3 0.00015 3.3E-09 57.1 2.2 60 32-94 4-80 (213)
437 PRK14021 bifunctional shikimat 97.3 0.00035 7.7E-09 62.6 4.8 33 32-64 7-39 (542)
438 TIGR00764 lon_rel lon-related 97.3 0.0012 2.6E-08 60.0 8.1 27 32-58 38-64 (608)
439 PRK04301 radA DNA repair and r 97.3 0.00091 2E-08 55.9 6.9 39 28-66 99-146 (317)
440 PRK10867 signal recognition pa 97.3 0.0013 2.9E-08 57.3 8.0 38 31-68 100-141 (433)
441 PRK11889 flhF flagellar biosyn 97.3 0.0016 3.4E-08 56.1 8.3 35 32-66 242-279 (436)
442 TIGR02238 recomb_DMC1 meiotic 97.3 0.0011 2.4E-08 55.5 7.3 53 28-80 93-154 (313)
443 PRK11176 lipid transporter ATP 97.3 0.0016 3.5E-08 58.6 8.9 23 33-55 371-393 (582)
444 PRK08356 hypothetical protein; 97.3 0.00036 7.7E-09 54.2 4.1 28 33-61 7-34 (195)
445 PRK13833 conjugal transfer pro 97.3 0.0015 3.2E-08 54.9 8.0 25 31-55 144-168 (323)
446 PF08423 Rad51: Rad51; InterP 97.3 0.00076 1.7E-08 54.8 6.1 61 36-96 43-147 (256)
447 PRK12338 hypothetical protein; 97.2 0.00037 8.1E-09 58.2 4.4 29 31-59 4-32 (319)
448 PRK00300 gmk guanylate kinase; 97.2 0.00039 8.4E-09 54.1 4.3 25 32-56 6-30 (205)
449 TIGR03263 guanyl_kin guanylate 97.2 0.00023 5E-09 54.2 2.8 25 33-57 3-27 (180)
450 PRK11174 cysteine/glutathione 97.2 0.0021 4.6E-08 58.0 9.4 24 32-55 377-400 (588)
451 cd03284 ABC_MutS1 MutS1 homolo 97.2 0.0011 2.3E-08 52.6 6.6 21 33-53 32-52 (216)
452 COG1118 CysA ABC-type sulfate/ 97.2 0.001 2.3E-08 55.0 6.6 22 34-55 31-52 (345)
453 PRK14974 cell division protein 97.2 0.0022 4.7E-08 54.2 8.7 35 32-66 141-178 (336)
454 TIGR00235 udk uridine kinase. 97.2 0.00034 7.4E-09 54.8 3.7 23 34-56 9-31 (207)
455 cd00071 GMPK Guanosine monopho 97.2 0.00037 8E-09 51.2 3.6 25 34-58 2-26 (137)
456 COG1855 ATPase (PilT family) [ 97.2 0.00033 7.2E-09 60.7 3.8 26 32-57 264-289 (604)
457 cd02023 UMPK Uridine monophosp 97.2 0.00057 1.2E-08 53.0 4.9 22 34-55 2-23 (198)
458 TIGR01425 SRP54_euk signal rec 97.2 0.0017 3.8E-08 56.4 8.2 37 32-68 101-140 (429)
459 KOG0480 DNA replication licens 97.2 0.0011 2.5E-08 59.4 7.2 63 33-95 380-455 (764)
460 PRK13975 thymidylate kinase; P 97.2 0.00049 1.1E-08 53.1 4.4 28 33-60 4-31 (196)
461 PF09848 DUF2075: Uncharacteri 97.2 0.00081 1.8E-08 57.0 6.1 23 33-55 3-25 (352)
462 cd02024 NRK1 Nicotinamide ribo 97.2 0.0004 8.6E-09 53.9 3.8 30 34-63 2-32 (187)
463 PRK13894 conjugal transfer ATP 97.2 0.002 4.4E-08 54.0 8.3 25 31-55 148-172 (319)
464 PF01745 IPT: Isopentenyl tran 97.2 0.0005 1.1E-08 54.2 4.3 34 34-67 4-37 (233)
465 PRK00889 adenylylsulfate kinas 97.2 0.00066 1.4E-08 51.6 4.9 33 32-64 5-40 (175)
466 TIGR00017 cmk cytidylate kinas 97.2 0.00047 1E-08 54.7 4.2 29 33-61 4-32 (217)
467 TIGR02868 CydC thiol reductant 97.2 0.00068 1.5E-08 60.4 5.6 23 33-55 363-385 (529)
468 cd01672 TMPK Thymidine monopho 97.2 0.00061 1.3E-08 52.2 4.7 29 34-62 3-34 (200)
469 PRK09825 idnK D-gluconate kina 97.2 0.00048 1E-08 52.8 4.0 26 33-58 5-30 (176)
470 PF01443 Viral_helicase1: Vira 97.2 0.00039 8.6E-09 54.9 3.7 22 34-55 1-22 (234)
471 PLN02165 adenylate isopentenyl 97.2 0.00046 9.9E-09 58.0 4.2 31 33-63 45-75 (334)
472 cd03115 SRP The signal recogni 97.2 0.00071 1.5E-08 51.3 4.9 34 34-67 3-39 (173)
473 cd03287 ABC_MSH3_euk MutS3 hom 97.2 0.0035 7.5E-08 49.9 9.0 62 32-93 32-121 (222)
474 COG2274 SunT ABC-type bacterio 97.2 0.0014 3.1E-08 60.4 7.7 29 27-55 493-523 (709)
475 TIGR03880 KaiC_arch_3 KaiC dom 97.2 0.0016 3.5E-08 51.4 7.1 40 27-66 12-54 (224)
476 PRK00081 coaE dephospho-CoA ki 97.2 0.00053 1.1E-08 53.3 4.2 30 33-63 4-33 (194)
477 cd04160 Arfrp1 Arfrp1 subfamil 97.2 0.0016 3.5E-08 48.4 6.8 22 33-54 1-22 (167)
478 PRK06761 hypothetical protein; 97.2 0.00051 1.1E-08 56.6 4.3 29 33-61 5-33 (282)
479 PRK00091 miaA tRNA delta(2)-is 97.2 0.00057 1.2E-08 57.0 4.6 33 32-64 5-37 (307)
480 PF13555 AAA_29: P-loop contai 97.2 0.00055 1.2E-08 43.4 3.4 23 33-55 25-47 (62)
481 PRK14737 gmk guanylate kinase; 97.2 0.00043 9.4E-09 53.5 3.6 25 32-56 5-29 (186)
482 PF03029 ATP_bind_1: Conserved 97.1 0.00044 9.6E-09 55.6 3.7 29 36-64 1-32 (238)
483 PTZ00202 tuzin; Provisional 97.1 0.0033 7.1E-08 54.9 9.1 39 28-66 283-321 (550)
484 PRK13826 Dtr system oriT relax 97.1 0.0022 4.9E-08 61.5 8.8 65 32-96 398-482 (1102)
485 PF06431 Polyoma_lg_T_C: Polyo 97.1 0.0017 3.8E-08 54.9 7.1 61 27-91 151-211 (417)
486 cd04159 Arl10_like Arl10-like 97.1 0.0013 2.9E-08 47.8 5.9 21 34-54 2-22 (159)
487 PRK11545 gntK gluconate kinase 97.1 0.00043 9.3E-09 52.3 3.3 26 37-62 1-26 (163)
488 PF06414 Zeta_toxin: Zeta toxi 97.1 0.00056 1.2E-08 53.3 3.9 39 30-68 14-53 (199)
489 TIGR01613 primase_Cterm phage/ 97.1 0.0018 3.9E-08 53.8 7.1 61 30-93 75-139 (304)
490 PRK12337 2-phosphoglycerate ki 97.1 0.002 4.3E-08 56.4 7.4 28 31-58 255-282 (475)
491 PF08298 AAA_PrkA: PrkA AAA do 97.1 0.0014 3.1E-08 55.3 6.3 47 8-58 68-115 (358)
492 TIGR02788 VirB11 P-type DNA tr 97.1 0.0024 5.2E-08 53.2 7.7 28 28-55 141-168 (308)
493 cd03227 ABC_Class2 ABC-type Cl 97.1 0.0031 6.8E-08 47.4 7.7 65 32-96 22-113 (162)
494 PRK14733 coaE dephospho-CoA ki 97.1 0.00074 1.6E-08 53.1 4.2 31 33-63 8-38 (204)
495 PRK07667 uridine kinase; Provi 97.1 0.001 2.3E-08 51.6 5.0 35 33-67 19-56 (193)
496 cd00984 DnaB_C DnaB helicase C 97.1 0.0011 2.4E-08 52.8 5.3 40 27-66 9-52 (242)
497 cd01131 PilT Pilus retraction 97.1 0.00054 1.2E-08 53.4 3.4 24 33-56 3-26 (198)
498 TIGR03375 type_I_sec_LssB type 97.1 0.0031 6.8E-08 58.1 8.8 24 32-55 492-515 (694)
499 PF00519 PPV_E1_C: Papillomavi 97.1 0.0017 3.6E-08 55.5 6.4 35 27-61 258-292 (432)
500 TIGR00152 dephospho-CoA kinase 97.1 0.00071 1.5E-08 52.1 3.9 29 34-62 2-30 (188)
No 1
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-38 Score=256.77 Aligned_cols=167 Identities=26% Similarity=0.333 Sum_probs=145.0
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCC-----ChhHH-HHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLR-----DNTKL-RNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~-----~~~~l-~~~ 76 (192)
++|++++++.++.++.++++|..+|+.+|+|+|||||||||||.||+|+|++.++.|+.+..+.+. ..+.+ +++
T Consensus 157 ~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRel 236 (406)
T COG1222 157 DEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVREL 236 (406)
T ss_pred HHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999998873 34455 455
Q ss_pred HHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..++ .|||+||||||+++. .|.+... +.+.+-++++-+|+++||+|.... +-+||
T Consensus 237 F~lArekaPsIIFiDEIDAIg~--kR~d~~t--------------~gDrEVQRTmleLL~qlDGFD~~~------nvKVI 294 (406)
T COG1222 237 FELAREKAPSIIFIDEIDAIGA--KRFDSGT--------------SGDREVQRTMLELLNQLDGFDPRG------NVKVI 294 (406)
T ss_pred HHHHhhcCCeEEEEechhhhhc--ccccCCC--------------CchHHHHHHHHHHHHhccCCCCCC------CeEEE
Confidence 55443 699999999999987 6665544 234566688899999999998754 77888
Q ss_pred EEe---CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 155 IKT---DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 155 v~t---~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
.+| +.|||+|+|||||++.|+||.|+.+.|.+|++-+
T Consensus 295 ~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IH 334 (406)
T COG1222 295 MATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIH 334 (406)
T ss_pred EecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHH
Confidence 888 8999999999999999999999999999999754
No 2
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-34 Score=242.31 Aligned_cols=174 Identities=56% Similarity=0.929 Sum_probs=159.3
Q ss_pred CChHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHHHHHHhc
Q 040463 1 MDSNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRNVLIAT 80 (192)
Q Consensus 1 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~~~~~~~ 80 (192)
|+++.|+.|++.+.+|++++++|...|.++++|.|||||||||||+++.|+|++++..++.+..+.....++++..+...
T Consensus 205 Md~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t 284 (457)
T KOG0743|consen 205 MDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLAT 284 (457)
T ss_pred cChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHhC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred CCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCC-CCCcchHHHHHHhhcCccccccccCCCcceEEEEe--
Q 040463 81 ENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVN-QEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-- 157 (192)
Q Consensus 81 ~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-- 157 (192)
...+||+|+|||+.+.+..+...+.. +.. .....++++||+++|++|+++ | ..||||+|
T Consensus 285 ~~kSIivIEDIDcs~~l~~~~~~~~~-------------~~~~~~~~VTlSGLLNfiDGlwSsc---g--~ERIivFTTN 346 (457)
T KOG0743|consen 285 PNKSILLIEDIDCSFDLRERRKKKKE-------------NFEGDLSRVTLSGLLNFLDGLWSSC---G--DERIIVFTTN 346 (457)
T ss_pred CCCcEEEEeecccccccccccccccc-------------cccCCcceeehHHhhhhhccccccC---C--CceEEEEecC
Confidence 99999999999999875555554332 111 245689999999999999988 7 88999999
Q ss_pred --CCccccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 158 --DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 158 --~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
+.|||||+||||+|.+|++++++.++.+.|+++||
T Consensus 347 h~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL 383 (457)
T KOG0743|consen 347 HKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYL 383 (457)
T ss_pred ChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhc
Confidence 99999999999999999999999999999999987
No 3
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.5e-32 Score=234.74 Aligned_cols=162 Identities=23% Similarity=0.355 Sum_probs=141.4
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCC------ChhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLR------DNTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~------~~~~l~~~ 76 (192)
+|.|++|.| +.+|++.|+.|..+|...|+||||+||||||||.||||+|.+.+.+|+....+.+. +...+++.
T Consensus 310 DEAK~ELeE-iVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdL 388 (752)
T KOG0734|consen 310 DEAKQELEE-IVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDL 388 (752)
T ss_pred HHHHHHHHH-HHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHH
Confidence 456777776 99999999999999999999999999999999999999999999999999998885 35678888
Q ss_pred HHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..+. .||||||||+|.+.. +|..... ...+.++++||.+||+|..+. | ||
T Consensus 389 F~aAk~~APcIIFIDEiDavG~--kR~~~~~-----------------~y~kqTlNQLLvEmDGF~qNe---G-----iI 441 (752)
T KOG0734|consen 389 FAAAKARAPCIIFIDEIDAVGG--KRNPSDQ-----------------HYAKQTLNQLLVEMDGFKQNE---G-----II 441 (752)
T ss_pred HHHHHhcCCeEEEEechhhhcc--cCCccHH-----------------HHHHHHHHHHHHHhcCcCcCC---c-----eE
Confidence 88775 699999999999986 4432211 145578999999999998765 5 77
Q ss_pred EEe-----CCccccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 155 IKT-----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 155 v~t-----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
|++ +.+|++|.||||||++|.+|.|+-..|.+|+++||
T Consensus 442 vigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 442 VIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred EEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence 777 89999999999999999999999999999999985
No 4
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.7e-32 Score=239.14 Aligned_cols=162 Identities=23% Similarity=0.316 Sum_probs=144.3
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCC------ChhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLR------DNTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~------~~~~l~~~ 76 (192)
+++|.+|.+.+..++++++.|..+|+++++|||||||||||||++|+++|++.+++|+.+++..+. ++..+++.
T Consensus 440 E~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~i 519 (693)
T KOG0730|consen 440 EELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREV 519 (693)
T ss_pred HHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999887763 46788999
Q ss_pred HHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|.+++ .|||+||||||.+.. +|+++.. +...++++.||.+||++... ..|+
T Consensus 520 F~kAR~~aP~IiFfDEiDsi~~--~R~g~~~-----------------~v~~RVlsqLLtEmDG~e~~--------k~V~ 572 (693)
T KOG0730|consen 520 FRKARQVAPCIIFFDEIDALAG--SRGGSSS-----------------GVTDRVLSQLLTEMDGLEAL--------KNVL 572 (693)
T ss_pred HHHHhhcCCeEEehhhHHhHhh--ccCCCcc-----------------chHHHHHHHHHHHccccccc--------CcEE
Confidence 99886 699999999999987 6663322 46679999999999999753 2466
Q ss_pred EEe-----CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 155 IKT-----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 155 v~t-----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
|++ +.||++++|||||++.|++|.|+.+.|++|++.+
T Consensus 573 ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~ 614 (693)
T KOG0730|consen 573 VIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQC 614 (693)
T ss_pred EEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHH
Confidence 555 8999999999999999999999999999999875
No 5
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=7.1e-32 Score=233.40 Aligned_cols=162 Identities=19% Similarity=0.276 Sum_probs=144.1
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCC------ChhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLR------DNTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~------~~~~l~~~ 76 (192)
+++|.++...+..++++++.|..+|+..+.|||||||||||||.+|+|+|++.++.|+.+....+. ++..+++.
T Consensus 517 ~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~v 596 (802)
T KOG0733|consen 517 EEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQV 596 (802)
T ss_pred HHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999987763 46789999
Q ss_pred HHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|.+++ .||||||||+|.+.+ .|+.... ....++.+.||.+||++.... .|.
T Consensus 597 FqRAR~saPCVIFFDEiDaL~p--~R~~~~s-----------------~~s~RvvNqLLtElDGl~~R~--------gV~ 649 (802)
T KOG0733|consen 597 FQRARASAPCVIFFDEIDALVP--RRSDEGS-----------------SVSSRVVNQLLTELDGLEERR--------GVY 649 (802)
T ss_pred HHHhhcCCCeEEEecchhhcCc--ccCCCCc-----------------hhHHHHHHHHHHHhccccccc--------ceE
Confidence 99886 699999999999998 6654432 356789999999999997643 355
Q ss_pred EEe-----CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 155 IKT-----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 155 v~t-----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
|++ +.+||+++|||||++.++++.|+.++|..|++..
T Consensus 650 viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~ 691 (802)
T KOG0733|consen 650 VIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTI 691 (802)
T ss_pred EEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHH
Confidence 555 8999999999999999999999999999999753
No 6
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.1e-31 Score=207.63 Aligned_cols=166 Identities=25% Similarity=0.340 Sum_probs=139.7
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCC-----ChhH-HHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLR-----DNTK-LRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~-----~~~~-l~~~ 76 (192)
+.|.+++.+.++.+.+|+++|..+|+..|+|+|||||||||||.+++++|.+....|+.++.+.+. ..+. ++..
T Consensus 153 d~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrel 232 (404)
T KOG0728|consen 153 DKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVREL 232 (404)
T ss_pred HHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHH
Confidence 356788999999999999999999999999999999999999999999999999999999988763 2344 4455
Q ss_pred HHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|-.++ .|+|+|+||||.+.. .|..... +.+++-.++..+|++.+|+|.... +.++|
T Consensus 233 fvmarehapsiifmdeidsigs--~r~e~~~--------------ggdsevqrtmlellnqldgfeatk------nikvi 290 (404)
T KOG0728|consen 233 FVMAREHAPSIIFMDEIDSIGS--SRVESGS--------------GGDSEVQRTMLELLNQLDGFEATK------NIKVI 290 (404)
T ss_pred HHHHHhcCCceEeeeccccccc--ccccCCC--------------CccHHHHHHHHHHHHhcccccccc------ceEEE
Confidence 55544 699999999999986 5543322 224455678889999999998764 67788
Q ss_pred EEe---CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 155 IKT---DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 155 v~t---~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
.+| +-+||+++||||+++.|+||+|+++.|.+|++-
T Consensus 291 matnridild~allrpgridrkiefp~p~e~ar~~ilki 329 (404)
T KOG0728|consen 291 MATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKI 329 (404)
T ss_pred EeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHH
Confidence 888 889999999999999999999999999999874
No 7
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.6e-31 Score=208.92 Aligned_cols=165 Identities=26% Similarity=0.362 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCC------ChhHHHHHH
Q 040463 4 NMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLR------DNTKLRNVL 77 (192)
Q Consensus 4 ~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~------~~~~l~~~~ 77 (192)
-||+++++.++.++.+.++|++.|+.+|+|+|+|||||||||+|++++|++....|+.+..+.+. +..-++..|
T Consensus 162 ~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvf 241 (408)
T KOG0727|consen 162 VQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVF 241 (408)
T ss_pred hhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999988773 234455666
Q ss_pred HhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEE
Q 040463 78 IATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLII 155 (192)
Q Consensus 78 ~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv 155 (192)
.-+. .|+|+||||+|.++. +|.+.+. +.+.+-.+++-+|++.||+|.... +.++|.
T Consensus 242 rlakenapsiifideidaiat--krfdaqt--------------gadrevqril~ellnqmdgfdq~~------nvkvim 299 (408)
T KOG0727|consen 242 RLAKENAPSIIFIDEIDAIAT--KRFDAQT--------------GADREVQRILIELLNQMDGFDQTT------NVKVIM 299 (408)
T ss_pred HHHhccCCcEEEeehhhhHhh--hhccccc--------------cccHHHHHHHHHHHHhccCcCccc------ceEEEE
Confidence 5553 699999999999987 6655543 335566788999999999998765 677888
Q ss_pred Ee---CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 156 KT---DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 156 ~t---~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
+| +.+||+++||||.++.|+||.|+..|++-+|..
T Consensus 300 atnradtldpallrpgrldrkiefplpdrrqkrlvf~t 337 (408)
T KOG0727|consen 300 ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFST 337 (408)
T ss_pred ecCcccccCHhhcCCccccccccCCCCchhhhhhhHHh
Confidence 88 899999999999999999999999999887753
No 8
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.2e-30 Score=223.22 Aligned_cols=164 Identities=19% Similarity=0.264 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCC------ChhHHHHHH
Q 040463 4 NMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLR------DNTKLRNVL 77 (192)
Q Consensus 4 ~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~------~~~~l~~~~ 77 (192)
.+-++|++.+.. +.+++.|..+|..+++|+|||||||||||+||+++|.+++++++.+++..+. ++..++++|
T Consensus 197 ~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF 275 (802)
T KOG0733|consen 197 KTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELF 275 (802)
T ss_pred HHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHH
Confidence 455667775544 9999999999999999999999999999999999999999999999998874 467899999
Q ss_pred HhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEE
Q 040463 78 IATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLII 155 (192)
Q Consensus 78 ~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv 155 (192)
..+. .|||+||||||.+.+ .|...+.+ -..++...|+..||++.... .....|+|
T Consensus 276 ~~A~~~aPcivFiDeIDAI~p--kRe~aqre-----------------MErRiVaQLlt~mD~l~~~~----~~g~~VlV 332 (802)
T KOG0733|consen 276 DQAKSNAPCIVFIDEIDAITP--KREEAQRE-----------------MERRIVAQLLTSMDELSNEK----TKGDPVLV 332 (802)
T ss_pred HHHhccCCeEEEeeccccccc--chhhHHHH-----------------HHHHHHHHHHHhhhcccccc----cCCCCeEE
Confidence 9886 699999999999998 66554332 45688999999999997642 22345666
Q ss_pred Ee-----CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 156 KT-----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 156 ~t-----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
|+ +.+|++|+|+|||+++|-+..|++.+|.+|++.+
T Consensus 333 IgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~ 373 (802)
T KOG0733|consen 333 IGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRII 373 (802)
T ss_pred EecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHH
Confidence 66 8999999999999999999999999999998754
No 9
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.2e-30 Score=228.24 Aligned_cols=166 Identities=25% Similarity=0.364 Sum_probs=142.8
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCC------ChhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLR------DNTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~------~~~~l~~~ 76 (192)
++.|++|+| +..|+++++.|.++|...|+|+||+||||||||.||+|+|.+.+.||+.++.+.+. ..+.++.+
T Consensus 317 deAK~El~E-~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~l 395 (774)
T KOG0731|consen 317 DEAKEELME-FVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDL 395 (774)
T ss_pred HHHHHHHHH-HHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHH
Confidence 578999998 89999999999999999999999999999999999999999999999999999884 36778888
Q ss_pred HHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..++ .|||+|+||||.+.. .|.+... ...+.+....+++|+-+||++..+. .+|
T Consensus 396 f~~ar~~aP~iifideida~~~--~r~G~~~-------------~~~~~e~e~tlnQll~emDgf~~~~--------~vi 452 (774)
T KOG0731|consen 396 FPLARKNAPSIIFIDEIDAVGR--KRGGKGT-------------GGGQDEREQTLNQLLVEMDGFETSK--------GVI 452 (774)
T ss_pred HHHhhccCCeEEEecccccccc--ccccccc-------------CCCChHHHHHHHHHHHHhcCCcCCC--------cEE
Confidence 88776 699999999999987 5532111 1235567789999999999997643 255
Q ss_pred EEe-----CCccccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 155 IKT-----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 155 v~t-----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
|++ +.+|++++|||||+++|.++.|+..+|.+|++.++
T Consensus 453 ~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~ 495 (774)
T KOG0731|consen 453 VLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHL 495 (774)
T ss_pred EEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHh
Confidence 555 89999999999999999999999999999998763
No 10
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.3e-31 Score=210.47 Aligned_cols=166 Identities=25% Similarity=0.305 Sum_probs=139.4
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCC-----ChhHH-HHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLR-----DNTKL-RNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~-----~~~~l-~~~ 76 (192)
++|.+++.+.++.++.|+++|..+|+.+|+|++|||+||||||.||+|+|+.....|+.+..+.+. +...+ ++.
T Consensus 191 e~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRql 270 (440)
T KOG0726|consen 191 ESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVREL 270 (440)
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHH
Confidence 568899999999999999999999999999999999999999999999999999999988877663 23344 455
Q ss_pred HHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..+. .|+|+|+||||.+.. +|.+.++. ...+-.++..+|++.+|+|.+.. ..+||
T Consensus 271 F~vA~e~apSIvFiDEIdAiGt--KRyds~Sg--------------gerEiQrtmLELLNQldGFdsrg------DvKvi 328 (440)
T KOG0726|consen 271 FRVAEEHAPSIVFIDEIDAIGT--KRYDSNSG--------------GEREIQRTMLELLNQLDGFDSRG------DVKVI 328 (440)
T ss_pred HHHHHhcCCceEEeehhhhhcc--ccccCCCc--------------cHHHHHHHHHHHHHhccCccccC------CeEEE
Confidence 55443 699999999999987 77766542 12334466678999999997653 67788
Q ss_pred EEe---CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 155 IKT---DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 155 v~t---~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
.+| +.+||+|.||||+++.|+||.|++.+++.||+-
T Consensus 329 mATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~I 367 (440)
T KOG0726|consen 329 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQI 367 (440)
T ss_pred EecccccccCHhhcCCCccccccccCCCchhhhceeEEE
Confidence 888 899999999999999999999999999998853
No 11
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.3e-29 Score=222.24 Aligned_cols=163 Identities=21% Similarity=0.328 Sum_probs=137.8
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCC------CChhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTL------RDNTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~------~~~~~l~~~ 76 (192)
+++|.++++-+..+++|+++|.. |..++.|||||||||||||.+|+|+|.+++..|+.+....+ ++++.++++
T Consensus 678 eevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~V 756 (953)
T KOG0736|consen 678 EEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREV 756 (953)
T ss_pred HHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHH
Confidence 58899999999999999999985 67777899999999999999999999999999999988776 357899999
Q ss_pred HHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|.+++ +|||||+||+|.+++ .|..+.++ .+...++.++|+.++|+++... ...|+
T Consensus 757 FerAR~A~PCVIFFDELDSlAP--~RG~sGDS---------------GGVMDRVVSQLLAELDgls~~~------s~~VF 813 (953)
T KOG0736|consen 757 FERARSAAPCVIFFDELDSLAP--NRGRSGDS---------------GGVMDRVVSQLLAELDGLSDSS------SQDVF 813 (953)
T ss_pred HHHhhccCCeEEEeccccccCc--cCCCCCCc---------------cccHHHHHHHHHHHhhcccCCC------CCceE
Confidence 99996 799999999999999 44444333 2467799999999999998633 44577
Q ss_pred EEe-----CCccccccCCCcceeEEEecCCCHHH-HHHHHH
Q 040463 155 IKT-----DLTLNLLLRPGCMDMHIHMSYCTPCG-LKMLAS 189 (192)
Q Consensus 155 v~t-----~~l~~~l~~~~rf~~~i~~~~p~~~~-r~~i~~ 189 (192)
|++ +-|||+|+||||||+-++++++..++ +..+++
T Consensus 814 ViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~ 854 (953)
T KOG0736|consen 814 VIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLE 854 (953)
T ss_pred EEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHH
Confidence 776 89999999999999999999876544 445544
No 12
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.95 E-value=6.1e-28 Score=206.11 Aligned_cols=167 Identities=25% Similarity=0.337 Sum_probs=133.2
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCC------ChhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLR------DNTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~------~~~~l~~~ 76 (192)
+++++++.+.++.++.+++.|..+|..+++|+|||||||||||++++++|+.++.+++.+.++.+. ....+++.
T Consensus 151 ~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~l 230 (398)
T PTZ00454 151 DIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDV 230 (398)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999988776542 13355666
Q ss_pred HHhc--CCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIAT--ENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~--~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..+ ..|+||||||+|.++. .+.+... +.+......+..++..++++.... ...+|
T Consensus 231 f~~A~~~~P~ILfIDEID~i~~--~r~~~~~--------------~~d~~~~r~l~~LL~~ld~~~~~~------~v~VI 288 (398)
T PTZ00454 231 FRLARENAPSIIFIDEVDSIAT--KRFDAQT--------------GADREVQRILLELLNQMDGFDQTT------NVKVI 288 (398)
T ss_pred HHHHHhcCCeEEEEECHhhhcc--ccccccC--------------CccHHHHHHHHHHHHHhhccCCCC------CEEEE
Confidence 6555 3799999999999976 4432211 111223356778888888876432 33344
Q ss_pred EEe---CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 155 IKT---DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 155 v~t---~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
++| +.+|++++|||||++.|+|+.|+.++|.+||+.+
T Consensus 289 ~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~ 328 (398)
T PTZ00454 289 MATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTI 328 (398)
T ss_pred EecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHH
Confidence 444 8999999999999999999999999999999865
No 13
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.3e-28 Score=193.53 Aligned_cols=166 Identities=24% Similarity=0.301 Sum_probs=135.8
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCC-----CChhHHHH-H
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTL-----RDNTKLRN-V 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~-----~~~~~l~~-~ 76 (192)
+.|.+++.+.+..++.|++.|..+|+.+|+|+|+|||||||||.+||+-|...+..|+.+...++ .+.+.+.+ .
T Consensus 177 dkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDA 256 (424)
T KOG0652|consen 177 DKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDA 256 (424)
T ss_pred HHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999888877666554 23444443 3
Q ss_pred HHhc--CCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIAT--ENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~--~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|.-+ ..|+|+||||+|.+.. +|.++... .+.+-.++..+|++.+|+|+++. ..+||
T Consensus 257 FaLAKEkaP~IIFIDElDAIGt--KRfDSek~--------------GDREVQRTMLELLNQLDGFss~~------~vKvi 314 (424)
T KOG0652|consen 257 FALAKEKAPTIIFIDELDAIGT--KRFDSEKA--------------GDREVQRTMLELLNQLDGFSSDD------RVKVI 314 (424)
T ss_pred HHHhhccCCeEEEEechhhhcc--cccccccc--------------ccHHHHHHHHHHHHhhcCCCCcc------ceEEE
Confidence 3333 3699999999999987 66555432 23455677889999999998765 55566
Q ss_pred EEe---CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 155 IKT---DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 155 v~t---~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
-+| +-+||+++|.||.++.|+||.|+++.|.+|++-
T Consensus 315 AATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQI 353 (424)
T KOG0652|consen 315 AATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQI 353 (424)
T ss_pred eecccccccCHHHhhcccccccccCCCCChHHHHHHHHH
Confidence 666 889999999999999999999999999999874
No 14
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.95 E-value=1.7e-27 Score=207.76 Aligned_cols=165 Identities=23% Similarity=0.331 Sum_probs=127.9
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCc----------EEEeecCCCC----
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFD----------VCDLELTTLR---- 68 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~----------~~~i~~~~~~---- 68 (192)
+++++++++.+..++.+++.|...|+.+++|+|||||||||||++++++|+.++.+ ++.+..+.+.
T Consensus 188 ~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyv 267 (512)
T TIGR03689 188 DSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYV 267 (512)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhccccc
Confidence 46789999999999999999999999999999999999999999999999998654 3334333322
Q ss_pred --ChhHHHHHHHhcC------CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCcc
Q 040463 69 --DNTKLRNVLIATE------NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVC 140 (192)
Q Consensus 69 --~~~~l~~~~~~~~------~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 140 (192)
....++.+|..+. .|+|+||||+|.++. .|..... +.....+++.|+..+|++.
T Consensus 268 Gete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~--~R~~~~s----------------~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 268 GETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFR--TRGSGVS----------------SDVETTVVPQLLSELDGVE 329 (512)
T ss_pred chHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhc--ccCCCcc----------------chHHHHHHHHHHHHhcccc
Confidence 1334555555442 599999999999986 4432211 1223467789999999986
Q ss_pred ccccccCCCcceEEEEe----CCccccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 141 RAVEMRGSQYSQLIIKT----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 141 ~~~~~~~~~~~~iiv~t----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
... ..++|++ +.||++++|||||+.+|+|+.|+.++|.+||+.|+
T Consensus 330 ~~~-------~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 330 SLD-------NVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cCC-------ceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 532 2333444 89999999999999999999999999999998874
No 15
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.95 E-value=3.2e-27 Score=201.71 Aligned_cols=168 Identities=25% Similarity=0.299 Sum_probs=131.9
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC------hhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD------NTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (192)
+++++++.+.+..++.+++.|..+|..+++|+|||||||||||++|+++|+.++.+++.+.++.+.. ...++..
T Consensus 137 ~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~ 216 (389)
T PRK03992 137 EEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVREL 216 (389)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999998877632 3345556
Q ss_pred HHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..+. .|+||||||+|.++. .+.+.... ........+..++..++++.... +..||
T Consensus 217 f~~a~~~~p~IlfiDEiD~l~~--~r~~~~~~--------------~~~~~~~~l~~lL~~ld~~~~~~------~v~VI 274 (389)
T PRK03992 217 FELAREKAPSIIFIDEIDAIAA--KRTDSGTS--------------GDREVQRTLMQLLAEMDGFDPRG------NVKII 274 (389)
T ss_pred HHHHHhcCCeEEEEechhhhhc--ccccCCCC--------------ccHHHHHHHHHHHHhccccCCCC------CEEEE
Confidence 66553 689999999999976 44332211 01122345667777777765432 22333
Q ss_pred EEe---CCccccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 155 IKT---DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 155 v~t---~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
.+| +.+|++++|||||+..|+|++|+.++|.+||+.++
T Consensus 275 ~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~ 315 (389)
T PRK03992 275 AATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHT 315 (389)
T ss_pred EecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHh
Confidence 344 78999999999999999999999999999998763
No 16
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7e-28 Score=192.14 Aligned_cols=166 Identities=23% Similarity=0.294 Sum_probs=138.6
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCC-----ChhHH-HHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLR-----DNTKL-RNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~-----~~~~l-~~~ 76 (192)
.++.+.+++.++.++-+++.|-.+|+.+++|+|||||||||||.+|+++|+..+.-|+.+-.+.+. ..+.+ +..
T Consensus 183 keqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrel 262 (435)
T KOG0729|consen 183 KEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVREL 262 (435)
T ss_pred HHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHH
Confidence 478899999999999999999999999999999999999999999999999999999988877663 23444 445
Q ss_pred HHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..++ +.||+|+||+|.+.+ .|.++.. +.+.+-.++..++++.+|+|... | +.+++
T Consensus 263 f~martkkaciiffdeidaigg--arfddg~--------------ggdnevqrtmleli~qldgfdpr----g--nikvl 320 (435)
T KOG0729|consen 263 FEMARTKKACIIFFDEIDAIGG--ARFDDGA--------------GGDNEVQRTMLELINQLDGFDPR----G--NIKVL 320 (435)
T ss_pred HHHhcccceEEEEeeccccccC--ccccCCC--------------CCcHHHHHHHHHHHHhccCCCCC----C--CeEEE
Confidence 55444 579999999999987 6655432 22344556777888999999654 4 77888
Q ss_pred EEe---CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 155 IKT---DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 155 v~t---~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
++| +.+||+|+||||+++.++|..|+.+.|..|++-
T Consensus 321 matnrpdtldpallrpgrldrkvef~lpdlegrt~i~ki 359 (435)
T KOG0729|consen 321 MATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKI 359 (435)
T ss_pred eecCCCCCcCHhhcCCcccccceeccCCcccccceeEEE
Confidence 888 899999999999999999999999999988753
No 17
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.3e-27 Score=206.02 Aligned_cols=164 Identities=25% Similarity=0.345 Sum_probs=141.1
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCC------ChhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLR------DNTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~------~~~~l~~~ 76 (192)
++.|+++.+ +..|++.++.|..+|...|+|++|+||||||||+||+++|.+.+.|++.++.+++. ..+.++++
T Consensus 156 dEakeel~E-iVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdL 234 (596)
T COG0465 156 DEAKEELSE-LVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDL 234 (596)
T ss_pred HHHHHHHHH-HHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHH
Confidence 678999988 89999999999999999899999999999999999999999999999999999985 36789999
Q ss_pred HHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..+. .|||+||||+|.+.. .|....+ +.+.+..-+++.++.+||++..+. + |+
T Consensus 235 F~qAkk~aP~IIFIDEiDAvGr--~Rg~g~G--------------ggnderEQTLNQlLvEmDGF~~~~---g-----vi 290 (596)
T COG0465 235 FEQAKKNAPCIIFIDEIDAVGR--QRGAGLG--------------GGNDEREQTLNQLLVEMDGFGGNE---G-----VI 290 (596)
T ss_pred HHHhhccCCCeEEEehhhhccc--ccCCCCC--------------CCchHHHHHHHHHHhhhccCCCCC---c-----eE
Confidence 99887 499999999999986 5532222 223445568999999999998543 3 66
Q ss_pred EEe-----CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 155 IKT-----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 155 v~t-----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
+++ +-+|++|+|||||++.|.++.|+...|.+|++-+
T Consensus 291 viaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH 332 (596)
T COG0465 291 VIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVH 332 (596)
T ss_pred EEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHH
Confidence 655 7799999999999999999999999999999743
No 18
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=9.6e-27 Score=204.38 Aligned_cols=162 Identities=22% Similarity=0.285 Sum_probs=139.4
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCC------ChhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLR------DNTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~------~~~~l~~~ 76 (192)
.++|+.+.+.++++.+-+.+|.++.+..+.|||||||||||||++|.++|..++..++.+....+. ++..++..
T Consensus 673 ~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~l 752 (952)
T KOG0735|consen 673 FEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDL 752 (952)
T ss_pred HHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHH
Confidence 467888999888898899999999999999999999999999999999999999999999887663 46678888
Q ss_pred HHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|.+++ +|||||+||+|.+++ +|.-+. .+...++.+.++.+||+...-. | ..|
T Consensus 753 F~rA~~a~PCiLFFDEfdSiAP--kRGhDs-----------------TGVTDRVVNQlLTelDG~Egl~---G----V~i 806 (952)
T KOG0735|consen 753 FERAQSAKPCILFFDEFDSIAP--KRGHDS-----------------TGVTDRVVNQLLTELDGAEGLD---G----VYI 806 (952)
T ss_pred HHHhhccCCeEEEeccccccCc--ccCCCC-----------------CCchHHHHHHHHHhhccccccc---e----EEE
Confidence 98886 799999999999998 554322 3467799999999999987532 3 333
Q ss_pred EEe----CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 155 IKT----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 155 v~t----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
+++ +.|||+|+||||+++.++-+.|++.+|.+|++.
T Consensus 807 ~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ 846 (952)
T KOG0735|consen 807 LAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQV 846 (952)
T ss_pred EEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHH
Confidence 333 899999999999999999999999999999874
No 19
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.2e-27 Score=195.15 Aligned_cols=165 Identities=22% Similarity=0.298 Sum_probs=139.0
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC-----hhHHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD-----NTKLRNVL 77 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~-----~~~l~~~~ 77 (192)
++.|+-|.|++..++.-+++|+-+..+++ |+|++||||||||.||+|+|.+++..|+.|+.+.+.+ ++.+.+++
T Consensus 218 ~~AK~lL~EAVvlPi~mPe~F~GirrPWk-gvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlL 296 (491)
T KOG0738|consen 218 HEAKKLLKEAVVLPIWMPEFFKGIRRPWK-GVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLL 296 (491)
T ss_pred HHHHHHHHHHHhhhhhhHHHHhhcccccc-eeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHH
Confidence 57899999999999999999997777775 9999999999999999999999999999999988853 67788887
Q ss_pred HhcC---CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 78 IATE---NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 78 ~~~~---~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
+..+ .|++|||||||.|+. +|.++.. .....+.-++||.+||+.....+. ...|+
T Consensus 297 FemARfyAPStIFiDEIDslcs--~RG~s~E----------------HEaSRRvKsELLvQmDG~~~t~e~----~k~Vm 354 (491)
T KOG0738|consen 297 FEMARFYAPSTIFIDEIDSLCS--QRGGSSE----------------HEASRRVKSELLVQMDGVQGTLEN----SKVVM 354 (491)
T ss_pred HHHHHHhCCceeehhhHHHHHh--cCCCccc----------------hhHHHHHHHHHHHHhhcccccccc----ceeEE
Confidence 7665 699999999999987 6654421 345568889999999999765311 23455
Q ss_pred EEe-----CCccccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 155 IKT-----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 155 v~t-----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
|++ +.||++++| ||.+.|++|.|+.+.|..|++..|
T Consensus 355 VLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l 395 (491)
T KOG0738|consen 355 VLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILL 395 (491)
T ss_pred EEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhh
Confidence 555 899999999 999999999999999999998653
No 20
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.94 E-value=1.2e-26 Score=199.76 Aligned_cols=168 Identities=23% Similarity=0.273 Sum_probs=132.2
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC------hhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD------NTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (192)
+++++++.+.+..++.++..|..+|..++.++|||||||||||++|+++|+.++.+++.+..+.+.. ...++..
T Consensus 189 ~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~l 268 (438)
T PTZ00361 189 EQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVREL 268 (438)
T ss_pred HHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999888776632 2335556
Q ss_pred HHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..+. .|+|+||||+|.+.. .+...... ........+..++..++++.... ...||
T Consensus 269 F~~A~~~~P~ILfIDEID~l~~--kR~~~~sg--------------g~~e~qr~ll~LL~~Ldg~~~~~------~V~VI 326 (438)
T PTZ00361 269 FRVAEENAPSIVFIDEIDAIGT--KRYDATSG--------------GEKEIQRTMLELLNQLDGFDSRG------DVKVI 326 (438)
T ss_pred HHHHHhCCCcEEeHHHHHHHhc--cCCCCCCc--------------ccHHHHHHHHHHHHHHhhhcccC------CeEEE
Confidence 65543 699999999999976 44322210 01122345677888888875432 33455
Q ss_pred EEe---CCccccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 155 IKT---DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 155 v~t---~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
++| +.+|++++|||||++.|+|+.|+.++|.+||+.++
T Consensus 327 ~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 327 MATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred EecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHH
Confidence 555 89999999999999999999999999999998763
No 21
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=4.5e-26 Score=208.33 Aligned_cols=164 Identities=21% Similarity=0.296 Sum_probs=135.6
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCC------ChhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLR------DNTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~------~~~~l~~~ 76 (192)
+++|+.+.+.+..++.+++.+..+|...+.|+|||||||||||++|+++|+.++.+++.++++.+. ++..++++
T Consensus 459 ~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~ 538 (733)
T TIGR01243 459 EEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREI 538 (733)
T ss_pred HHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999886653 24567778
Q ss_pred HHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..+. .|+||||||+|.+++ .+..... .......++.|+.++|++.... ..++
T Consensus 539 f~~A~~~~p~iifiDEid~l~~--~r~~~~~----------------~~~~~~~~~~lL~~ldg~~~~~-------~v~v 593 (733)
T TIGR01243 539 FRKARQAAPAIIFFDEIDAIAP--ARGARFD----------------TSVTDRIVNQLLTEMDGIQELS-------NVVV 593 (733)
T ss_pred HHHHHhcCCEEEEEEChhhhhc--cCCCCCC----------------ccHHHHHHHHHHHHhhcccCCC-------CEEE
Confidence 87764 689999999999987 4432211 1234567889999999886532 2333
Q ss_pred EEe----CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 155 IKT----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 155 v~t----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
|+| +.+|++++|||||+..|++|.|+.++|.+||+.+
T Consensus 594 I~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~ 634 (733)
T TIGR01243 594 IAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIH 634 (733)
T ss_pred EEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHH
Confidence 433 8899999999999999999999999999999765
No 22
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.94 E-value=4.6e-26 Score=200.15 Aligned_cols=166 Identities=23% Similarity=0.328 Sum_probs=132.0
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCC------ChhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLR------DNTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~------~~~~l~~~ 76 (192)
+++|+++.+ +..++.+++.|..+|...++|+|||||||||||++++++|.+++.+++.++++.+. +...++..
T Consensus 61 ~~~k~~l~~-~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~ 139 (495)
T TIGR01241 61 DEAKEELME-IVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDL 139 (495)
T ss_pred HHHHHHHHH-HHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHH
Confidence 567888887 55678999999999999899999999999999999999999999999999877653 24567777
Q ss_pred HHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..+. .|+||||||+|.+.. .+..... +........++.++.++|++..+. ..+|
T Consensus 140 f~~a~~~~p~Il~iDEid~l~~--~r~~~~~--------------~~~~~~~~~~~~lL~~~d~~~~~~-------~v~v 196 (495)
T TIGR01241 140 FEQAKKNAPCIIFIDEIDAVGR--QRGAGLG--------------GGNDEREQTLNQLLVEMDGFGTNT-------GVIV 196 (495)
T ss_pred HHHHHhcCCCEEEEechhhhhh--ccccCcC--------------CccHHHHHHHHHHHhhhccccCCC-------CeEE
Confidence 77764 689999999999976 4332111 112233467888999999886543 2333
Q ss_pred EEe----CCccccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 155 IKT----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 155 v~t----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
|+| +.+|++++|||||++.|+++.|+.++|.+|++.++
T Consensus 197 I~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l 238 (495)
T TIGR01241 197 IAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHA 238 (495)
T ss_pred EEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHH
Confidence 333 78999999999999999999999999999998764
No 23
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=7.2e-26 Score=198.88 Aligned_cols=163 Identities=25% Similarity=0.324 Sum_probs=139.4
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC------hhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD------NTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (192)
++.|+.+.+.+..++.+++.|...++.++.|+|||||||||||++|+++|+.++.+|+.+..+.+.+ +..+++.
T Consensus 248 ~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~ 327 (494)
T COG0464 248 EEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIREL 327 (494)
T ss_pred HHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHH
Confidence 5689999999999999999999989988889999999999999999999999999999998876643 5677888
Q ss_pred HHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..+. .|||||+||+|.+++ .+....+. ...++.+.++.+++++.... .|+
T Consensus 328 F~~A~~~~p~iiFiDEiDs~~~--~r~~~~~~-----------------~~~r~~~~lL~~~d~~e~~~--------~v~ 380 (494)
T COG0464 328 FEKARKLAPSIIFIDEIDSLAS--GRGPSEDG-----------------SGRRVVGQLLTELDGIEKAE--------GVL 380 (494)
T ss_pred HHHHHcCCCcEEEEEchhhhhc--cCCCCCch-----------------HHHHHHHHHHHHhcCCCccC--------ceE
Confidence 88776 699999999999987 55444321 22589999999999987643 244
Q ss_pred EEe-----CCccccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 155 IKT-----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 155 v~t-----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
|++ +.+|++++|||||+..++++.|+.++|.+||+.++
T Consensus 381 vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~ 423 (494)
T COG0464 381 VIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHL 423 (494)
T ss_pred EEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHh
Confidence 444 89999999999999999999999999999998764
No 24
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.93 E-value=5.1e-26 Score=180.64 Aligned_cols=153 Identities=16% Similarity=0.246 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC------hhHHHHHHHhcC
Q 040463 8 MKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD------NTKLRNVLIATE 81 (192)
Q Consensus 8 ~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~------~~~l~~~~~~~~ 81 (192)
.-...+..|+++++.|..| .|+++|+|||||||||++|+++|++...+++-++...+.+ ..++++.+..++
T Consensus 131 ~kcrli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~ 207 (368)
T COG1223 131 RKCRLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERAR 207 (368)
T ss_pred HHHHHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3455688999999999876 3569999999999999999999999999999999988853 457777777775
Q ss_pred --CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe--
Q 040463 82 --NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-- 157 (192)
Q Consensus 82 --~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-- 157 (192)
.|||+||||+|.++- ..+..+. .+.-..+.+.||.+||++.++. | |+.++
T Consensus 208 ~~aPcivFiDE~DAiaL-dRryQel-----------------RGDVsEiVNALLTelDgi~ene---G-----VvtIaaT 261 (368)
T COG1223 208 KAAPCIVFIDELDAIAL-DRRYQEL-----------------RGDVSEIVNALLTELDGIKENE---G-----VVTIAAT 261 (368)
T ss_pred hcCCeEEEehhhhhhhh-hhhHHHh-----------------cccHHHHHHHHHHhccCcccCC---c-----eEEEeec
Confidence 699999999999974 2333222 2345689999999999999776 5 55444
Q ss_pred ---CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 158 ---DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 158 ---~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
+.||+++++ ||...|+|..|+.++|..|++.|
T Consensus 262 N~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y 296 (368)
T COG1223 262 NRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYY 296 (368)
T ss_pred CChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHH
Confidence 889999999 99999999999999999999887
No 25
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.93 E-value=2.5e-25 Score=194.02 Aligned_cols=143 Identities=21% Similarity=0.274 Sum_probs=111.3
Q ss_pred HHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCC------ChhHHHHHHHhcC--CCeEEEEeCCCcc
Q 040463 23 YRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLR------DNTKLRNVLIATE--NKSILAVEDIDCS 94 (192)
Q Consensus 23 ~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~------~~~~l~~~~~~~~--~~~Il~lDeid~l 94 (192)
....|.+.++|+|||||||||||++|+++|+.++.+++.++++.+. ++..++++|..+. .||||||||+|.+
T Consensus 251 ~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~ 330 (489)
T CHL00195 251 ASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKA 330 (489)
T ss_pred HHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhh
Confidence 4557888889999999999999999999999999999999887653 2456777777553 7999999999998
Q ss_pred ccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe----CCccccccCCCcc
Q 040463 95 INLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT----DLTLNLLLRPGCM 170 (192)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t----~~l~~~l~~~~rf 170 (192)
+. .+....+ .+....++..++..++... ...++|+| +.+|++++|+|||
T Consensus 331 ~~--~~~~~~d----------------~~~~~rvl~~lL~~l~~~~---------~~V~vIaTTN~~~~Ld~allR~GRF 383 (489)
T CHL00195 331 FS--NSESKGD----------------SGTTNRVLATFITWLSEKK---------SPVFVVATANNIDLLPLEILRKGRF 383 (489)
T ss_pred hc--cccCCCC----------------chHHHHHHHHHHHHHhcCC---------CceEEEEecCChhhCCHHHhCCCcC
Confidence 75 2221111 1233466777777776432 22345555 7899999999999
Q ss_pred eeEEEecCCCHHHHHHHHHhcC
Q 040463 171 DMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 171 ~~~i~~~~p~~~~r~~i~~~~l 192 (192)
+..++++.|+.++|.+||+.++
T Consensus 384 D~~i~v~lP~~~eR~~Il~~~l 405 (489)
T CHL00195 384 DEIFFLDLPSLEEREKIFKIHL 405 (489)
T ss_pred CeEEEeCCcCHHHHHHHHHHHH
Confidence 9999999999999999999764
No 26
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.2e-26 Score=184.11 Aligned_cols=161 Identities=20% Similarity=0.284 Sum_probs=130.7
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCC-----ChhHHH-HH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLR-----DNTKLR-NV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~-----~~~~l~-~~ 76 (192)
+..|++|.+.+..+++-+.+|.--..++ +|||||||||||||+||+++|.+.+..|+.++.+++. .++.+. +.
T Consensus 139 E~AKeALKEAVILPIKFPqlFtGkR~Pw-rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknL 217 (439)
T KOG0739|consen 139 EGAKEALKEAVILPIKFPQLFTGKRKPW-RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNL 217 (439)
T ss_pred hhHHHHHHhheeecccchhhhcCCCCcc-eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHH
Confidence 4579999999999999999988433444 5999999999999999999999999999999988774 344554 55
Q ss_pred HHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..++ +|+||||||||.++. .|+++.+ ....++-.+++.+|.+.- ++..-|+
T Consensus 218 FemARe~kPSIIFiDEiDslcg--~r~enEs-----------------easRRIKTEfLVQMqGVG-------~d~~gvL 271 (439)
T KOG0739|consen 218 FEMARENKPSIIFIDEIDSLCG--SRSENES-----------------EASRRIKTEFLVQMQGVG-------NDNDGVL 271 (439)
T ss_pred HHHHHhcCCcEEEeehhhhhcc--CCCCCch-----------------HHHHHHHHHHHHhhhccc-------cCCCceE
Confidence 55443 799999999999987 5554432 355688889999999984 3344566
Q ss_pred EEe-----CCccccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 155 IKT-----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 155 v~t-----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
|++ +.+|.+++| ||++.|++|.|+...|..+|+..|
T Consensus 272 VLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhl 312 (439)
T KOG0739|consen 272 VLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHL 312 (439)
T ss_pred EEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheecc
Confidence 666 889999999 999999999999999999987653
No 27
>CHL00176 ftsH cell division protein; Validated
Probab=99.93 E-value=2.8e-25 Score=198.98 Aligned_cols=166 Identities=25% Similarity=0.332 Sum_probs=130.8
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCC------ChhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLR------DNTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~------~~~~l~~~ 76 (192)
+++++++.+ +..+++++..|..+|...++|+||+||||||||++|+++|.+++.+++.++++.+. ....++..
T Consensus 189 ~~~k~~l~e-iv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~l 267 (638)
T CHL00176 189 EEAKEEFEE-VVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDL 267 (638)
T ss_pred HHHHHHHHH-HHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHH
Confidence 466777766 66788999999999999999999999999999999999999999999999887763 23456677
Q ss_pred HHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..+. .|+||||||+|.+.. .+..... +.+......++.++.++|++..+. ..++
T Consensus 268 F~~A~~~~P~ILfIDEID~l~~--~r~~~~~--------------~~~~e~~~~L~~LL~~~dg~~~~~-------~ViV 324 (638)
T CHL00176 268 FKKAKENSPCIVFIDEIDAVGR--QRGAGIG--------------GGNDEREQTLNQLLTEMDGFKGNK-------GVIV 324 (638)
T ss_pred HHHHhcCCCcEEEEecchhhhh--cccCCCC--------------CCcHHHHHHHHHHHhhhccccCCC-------CeeE
Confidence 77664 699999999999975 4332211 112233467888999999886532 2233
Q ss_pred EEe----CCccccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 155 IKT----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 155 v~t----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
|++ +.+|++++|||||++.|.++.|+.++|.+|++.++
T Consensus 325 IaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l 366 (638)
T CHL00176 325 IAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHA 366 (638)
T ss_pred EEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHH
Confidence 333 77899999999999999999999999999998764
No 28
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.5e-26 Score=185.96 Aligned_cols=164 Identities=26% Similarity=0.315 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC------hhHHHHHH
Q 040463 4 NMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD------NTKLRNVL 77 (192)
Q Consensus 4 ~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~------~~~l~~~~ 77 (192)
+|..++++.++.++.++.++..+|+.+|.+++||||||+|||.+++++|...++.++.+..+.+.+ ..-++++|
T Consensus 139 ~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf 218 (388)
T KOG0651|consen 139 YQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMF 218 (388)
T ss_pred HHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHH
Confidence 567788999999999999999999999999999999999999999999999999999999888854 33456677
Q ss_pred HhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEE
Q 040463 78 IATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLII 155 (192)
Q Consensus 78 ~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv 155 (192)
..++ .|||+|+||+|.+.+ .+..+ .+ ..+..-..++-+|++.|+++.... +.++|+
T Consensus 219 ~yA~~~~pciifmdeiDAigG--Rr~se-~T-------------s~dreiqrTLMeLlnqmdgfd~l~------rVk~Im 276 (388)
T KOG0651|consen 219 RYAREVIPCIIFMDEIDAIGG--RRFSE-GT-------------SSDREIQRTLMELLNQMDGFDTLH------RVKTIM 276 (388)
T ss_pred HHHhhhCceEEeehhhhhhcc--EEecc-cc-------------chhHHHHHHHHHHHHhhccchhcc------cccEEE
Confidence 6665 699999999999986 55333 32 234445567778888888887654 667888
Q ss_pred Ee---CCccccccCCCcceeEEEecCCCHHHHHHHHH
Q 040463 156 KT---DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLAS 189 (192)
Q Consensus 156 ~t---~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~ 189 (192)
+| +.|+|+|+||||.++.+++|.|++..|+.|++
T Consensus 277 atNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~K 313 (388)
T KOG0651|consen 277 ATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILK 313 (388)
T ss_pred ecCCccccchhhcCCccccceeccCCcchhhceeeEe
Confidence 88 89999999999999999999999999987764
No 29
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.93 E-value=4.4e-25 Score=187.21 Aligned_cols=167 Identities=26% Similarity=0.296 Sum_probs=128.2
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC------hhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD------NTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (192)
+++++++.+.+..++.++..+..+|..++.|+|||||||||||++|+++|+.++.+++.+.+..+.. ...+...
T Consensus 128 ~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~ 207 (364)
T TIGR01242 128 EEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREI 207 (364)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHH
Confidence 5788999999999999999999999999999999999999999999999999999998887655421 2234555
Q ss_pred HHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..+. .|+||||||+|.+.. .+.+.... ........+..++..++++.... +..+|
T Consensus 208 f~~a~~~~p~il~iDEiD~l~~--~~~~~~~~--------------~~~~~~~~l~~ll~~ld~~~~~~------~v~vI 265 (364)
T TIGR01242 208 FELAKEKAPSIIFIDEIDAIAA--KRTDSGTS--------------GDREVQRTLMQLLAELDGFDPRG------NVKVI 265 (364)
T ss_pred HHHHHhcCCcEEEhhhhhhhcc--ccccCCCC--------------ccHHHHHHHHHHHHHhhCCCCCC------CEEEE
Confidence 55443 689999999999976 43322110 11122345667777777764322 22344
Q ss_pred EEe---CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 155 IKT---DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 155 v~t---~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
.+| +.+|+++++||||+..|+|+.|+.++|.+|++.+
T Consensus 266 ~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~ 305 (364)
T TIGR01242 266 AATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIH 305 (364)
T ss_pred EecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHH
Confidence 444 7899999999999999999999999999999875
No 30
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.92 E-value=1.9e-24 Score=180.12 Aligned_cols=148 Identities=15% Similarity=0.086 Sum_probs=108.8
Q ss_pred HHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC------hhHHHHHHHhcC-------CCeEEEEe
Q 040463 23 YRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD------NTKLRNVLIATE-------NKSILAVE 89 (192)
Q Consensus 23 ~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~------~~~l~~~~~~~~-------~~~Il~lD 89 (192)
...+|+..|.+++||||||||||++|+++|++++.+++.++...+.+ +..+++.|..+. +|||||||
T Consensus 140 l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFID 219 (413)
T PLN00020 140 LALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFIN 219 (413)
T ss_pred hhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEe
Confidence 33467888899999999999999999999999999999999988753 456777777553 59999999
Q ss_pred CCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCc--------cccccccCCCcceEEEEe---C
Q 040463 90 DIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGV--------CRAVEMRGSQYSQLIIKT---D 158 (192)
Q Consensus 90 eid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--------~~~~~~~~~~~~~iiv~t---~ 158 (192)
|||.+++ .+.....+ .....+...|++++|+. |...+ ......||.+| +
T Consensus 220 EIDA~~g--~r~~~~~t----------------v~~qiV~~tLLnl~D~p~~v~l~G~w~~~~--~~~~V~VIaTTNrpd 279 (413)
T PLN00020 220 DLDAGAG--RFGTTQYT----------------VNNQMVNGTLMNIADNPTNVSLGGDWREKE--EIPRVPIIVTGNDFS 279 (413)
T ss_pred hhhhcCC--CCCCCCcc----------------hHHHHHHHHHHHHhcCCccccccccccccc--cCCCceEEEeCCCcc
Confidence 9999987 54322111 11233346888888753 21000 00122233333 8
Q ss_pred CccccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 159 LTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 159 ~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
.||++|+|||||++.+ ..|+.++|.+|++.++
T Consensus 280 ~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~ 311 (413)
T PLN00020 280 TLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIF 311 (413)
T ss_pred cCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHh
Confidence 9999999999999975 5899999999998653
No 31
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.6e-24 Score=178.94 Aligned_cols=163 Identities=17% Similarity=0.263 Sum_probs=134.4
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhc-CCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC-----hhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVG-RAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD-----NTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~-----~~~l~~~ 76 (192)
+++++++.+.+..++.++++|..-+ ..+++|||||||||||||.+|+++|++.+..++.+..+.+.+ ...+...
T Consensus 98 e~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~A 177 (386)
T KOG0737|consen 98 EEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKA 177 (386)
T ss_pred HHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHHHHHHHH
Confidence 5689999999999999999997333 345679999999999999999999999999999999887754 4455555
Q ss_pred HHhcC---CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceE
Q 040463 77 LIATE---NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQL 153 (192)
Q Consensus 77 ~~~~~---~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~i 153 (192)
++..+ .|+|+||||+|.++. .|.... ....+.+-+++...+|++.++. +.+|
T Consensus 178 vFslAsKl~P~iIFIDEvds~L~--~R~s~d-----------------HEa~a~mK~eFM~~WDGl~s~~------~~rV 232 (386)
T KOG0737|consen 178 VFSLASKLQPSIIFIDEVDSFLG--QRRSTD-----------------HEATAMMKNEFMALWDGLSSKD------SERV 232 (386)
T ss_pred HHhhhhhcCcceeehhhHHHHHh--hcccch-----------------HHHHHHHHHHHHHHhccccCCC------CceE
Confidence 55544 699999999999987 552111 2234566778888899998765 7788
Q ss_pred EEEe-----CCccccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 154 IIKT-----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 154 iv~t-----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
+|++ ..+|++++| |+++.++++.|+.++|++|++-+|
T Consensus 233 lVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviL 274 (386)
T KOG0737|consen 233 LVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVIL 274 (386)
T ss_pred EEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHh
Confidence 8888 789999999 999999999999999999998654
No 32
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.90 E-value=1.8e-23 Score=198.97 Aligned_cols=140 Identities=16% Similarity=0.136 Sum_probs=108.7
Q ss_pred HHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCCh-----------------------------
Q 040463 20 KEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDN----------------------------- 70 (192)
Q Consensus 20 ~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~----------------------------- 70 (192)
+.....+|..+++||||+||||||||++|+++|.+.+++++.++++.+...
T Consensus 1619 kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~ 1698 (2281)
T CHL00206 1619 KPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLD 1698 (2281)
T ss_pred cCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccc
Confidence 345567888899999999999999999999999999999999988665310
Q ss_pred --------------------hHHHHHHHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcch
Q 040463 71 --------------------TKLRNVLIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVT 128 (192)
Q Consensus 71 --------------------~~l~~~~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (192)
..++..|..|+ .||||||||||.+.. . ......
T Consensus 1699 ~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~--~-----------------------ds~~lt 1753 (2281)
T CHL00206 1699 TELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNV--N-----------------------ESNYLS 1753 (2281)
T ss_pred hhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCC--C-----------------------ccceeh
Confidence 11455566554 699999999999975 1 112235
Q ss_pred HHHHHHhhcCccccccccCCCcceEEEEe-----CCccccccCCCcceeEEEecCCCHHHHHHHHH
Q 040463 129 LSGLLNFIDGVCRAVEMRGSQYSQLIIKT-----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLAS 189 (192)
Q Consensus 129 ~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~ 189 (192)
++.|++.|++...... ...|+|++ +.|||||+|||||++.|.++.|+..+|.+++.
T Consensus 1754 L~qLLneLDg~~~~~s-----~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ 1814 (2281)
T CHL00206 1754 LGLLVNSLSRDCERCS-----TRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFF 1814 (2281)
T ss_pred HHHHHHHhccccccCC-----CCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHH
Confidence 7889999998743210 12255444 89999999999999999999999999998775
No 33
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.90 E-value=4.5e-23 Score=185.92 Aligned_cols=165 Identities=20% Similarity=0.317 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCC------ChhHHHHHH
Q 040463 4 NMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLR------DNTKLRNVL 77 (192)
Q Consensus 4 ~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~------~~~~l~~~~ 77 (192)
..++.+.+ +..++..+..+..++...++|++|+||||||||+++++++.+++.+++.++++.+. ....++..|
T Consensus 159 ~~~~~l~~-i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f 237 (644)
T PRK10733 159 EAKEEVAE-LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMF 237 (644)
T ss_pred HHHHHHHH-HHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHH
Confidence 44556555 55567777788888888888999999999999999999999999999999887653 234566666
Q ss_pred HhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEE
Q 040463 78 IATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLII 155 (192)
Q Consensus 78 ~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv 155 (192)
..+. .|+||||||+|.+.. .+..... +........++.++.++|++..+. ..++|
T Consensus 238 ~~a~~~~P~IifIDEiD~l~~--~r~~~~~--------------g~~~~~~~~ln~lL~~mdg~~~~~-------~vivI 294 (644)
T PRK10733 238 EQAKKAAPCIIFIDEIDAVGR--QRGAGLG--------------GGHDEREQTLNQMLVEMDGFEGNE-------GIIVI 294 (644)
T ss_pred HHHHhcCCcEEEehhHhhhhh--ccCCCCC--------------CCchHHHHHHHHHHHhhhcccCCC-------CeeEE
Confidence 6654 699999999999976 4432211 112234468899999999987543 23333
Q ss_pred Ee----CCccccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 156 KT----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 156 ~t----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
++ +.+|++++|||||+++|.++.|+.++|.+|++.++
T Consensus 295 aaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~ 335 (644)
T PRK10733 295 AATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 335 (644)
T ss_pred EecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHh
Confidence 33 88999999999999999999999999999998764
No 34
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.89 E-value=1.4e-22 Score=185.35 Aligned_cols=162 Identities=25% Similarity=0.322 Sum_probs=131.5
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC------hhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD------NTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (192)
+++++.+.+.+..++.+++.+..+|..++.++|||||||||||++++++|+.++.+++.+++..+.+ ...++..
T Consensus 184 ~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~l 263 (733)
T TIGR01243 184 KEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREI 263 (733)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHH
Confidence 4678889999999999999999999999999999999999999999999999999999998766532 3456667
Q ss_pred HHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..+. .|+||||||+|.+.+ .+..... .....+.+.|+..++++.... .++
T Consensus 264 f~~a~~~~p~il~iDEid~l~~--~r~~~~~-----------------~~~~~~~~~Ll~~ld~l~~~~--------~vi 316 (733)
T TIGR01243 264 FKEAEENAPSIIFIDEIDAIAP--KREEVTG-----------------EVEKRVVAQLLTLMDGLKGRG--------RVI 316 (733)
T ss_pred HHHHHhcCCcEEEeehhhhhcc--cccCCcc-----------------hHHHHHHHHHHHHhhccccCC--------CEE
Confidence 76653 689999999999986 4332211 123467788889998886432 355
Q ss_pred EEe-----CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 155 IKT-----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 155 v~t-----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
|++ +.+|+++++++||+..+.++.|+.++|.+|++.+
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~ 358 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVH 358 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHH
Confidence 543 7899999999999999999999999999999754
No 35
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=5.6e-23 Score=176.19 Aligned_cols=164 Identities=23% Similarity=0.346 Sum_probs=131.9
Q ss_pred ChHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCC-cEEEeecCCC------CChhHHH
Q 040463 2 DSNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNF-DVCDLELTTL------RDNTKLR 74 (192)
Q Consensus 2 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~-~~~~i~~~~~------~~~~~l~ 74 (192)
+.|--+.-++++..-+-.++...++|.++-+|||||||||||||.+||.+..-++. +.-.++...+ ++++.++
T Consensus 227 d~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR 306 (744)
T KOG0741|consen 227 DKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVR 306 (744)
T ss_pred hHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHH
Confidence 34444455555666566789999999999999999999999999999999999874 3445666555 3467888
Q ss_pred HHHHhcC----------CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCcccccc
Q 040463 75 NVLIATE----------NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVE 144 (192)
Q Consensus 75 ~~~~~~~----------~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 144 (192)
+.|..+. .=-|+++||+|+++. +|....+ ..+....+.++||.-||+...
T Consensus 307 ~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICK--qRGS~~g---------------~TGVhD~VVNQLLsKmDGVeq--- 366 (744)
T KOG0741|consen 307 KLFADAEEEQRRLGANSGLHIIIFDEIDAICK--QRGSMAG---------------STGVHDTVVNQLLSKMDGVEQ--- 366 (744)
T ss_pred HHHHhHHHHHHhhCccCCceEEEehhhHHHHH--hcCCCCC---------------CCCccHHHHHHHHHhcccHHh---
Confidence 8888773 236999999999997 6654443 256778899999999999964
Q ss_pred ccCCCcceEEEEe-----CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 145 MRGSQYSQLIIKT-----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 145 ~~~~~~~~iiv~t-----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
-..|+|++ +.||++|+|||||..++++..|++..|.+|++-
T Consensus 367 -----LNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~I 412 (744)
T KOG0741|consen 367 -----LNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKI 412 (744)
T ss_pred -----hhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEh
Confidence 34688888 899999999999999999999999999998753
No 36
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.5e-21 Score=165.81 Aligned_cols=162 Identities=17% Similarity=0.230 Sum_probs=132.6
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC-----hhHHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD-----NTKLRNVL 77 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~-----~~~l~~~~ 77 (192)
+..|+.+.+.+..++.++..|..+..+ .+|+||.||||+|||.+++++|.+.+..++.++++.+.+ .+.+.+.+
T Consensus 159 ~~~k~~l~e~vi~p~lr~d~F~glr~p-~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~Ge~eK~vral 237 (428)
T KOG0740|consen 159 EDAKQSLKEAVILPLLRPDLFLGLREP-VRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVGESEKLVRAL 237 (428)
T ss_pred hhHHHHhhhhhhhcccchHhhhccccc-cchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccChHHHHHHHH
Confidence 467888999999999989888866444 459999999999999999999999999999999988853 33444444
Q ss_pred HhcC---CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 78 IATE---NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 78 ~~~~---~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
+..+ .|+|+|+||+|.++. +|.+... ....++..+++..+++..... ..+|+
T Consensus 238 f~vAr~~qPsvifidEidslls--~Rs~~e~-----------------e~srr~ktefLiq~~~~~s~~------~drvl 292 (428)
T KOG0740|consen 238 FKVARSLQPSVIFIDEIDSLLS--KRSDNEH-----------------ESSRRLKTEFLLQFDGKNSAP------DDRVL 292 (428)
T ss_pred HHHHHhcCCeEEEechhHHHHh--hcCCccc-----------------ccchhhhhHHHhhhccccCCC------CCeEE
Confidence 4443 799999999999987 6643322 244577888888888887654 55788
Q ss_pred EEe-----CCccccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 155 IKT-----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 155 v~t-----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
|++ +.+|++++| ||...+++|.|+.+.|..+|+++|
T Consensus 293 vigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll 333 (428)
T KOG0740|consen 293 VIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLL 333 (428)
T ss_pred EEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHH
Confidence 777 899999999 999999999999999999998864
No 37
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.8e-21 Score=169.21 Aligned_cols=158 Identities=22% Similarity=0.295 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCC------ChhHHHHHHH
Q 040463 5 MKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLR------DNTKLRNVLI 78 (192)
Q Consensus 5 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~------~~~~l~~~~~ 78 (192)
+...+.+.++..+.++..+...|.++++|+|+|||||||||.+++++|++.+.+++.+++..+. +++.++..|.
T Consensus 192 ~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~ 271 (693)
T KOG0730|consen 192 QLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFA 271 (693)
T ss_pred HHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHH
Confidence 4567788888999999999999999999999999999999999999999999999999988663 4677888888
Q ss_pred hcC--C-CeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEE
Q 040463 79 ATE--N-KSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLII 155 (192)
Q Consensus 79 ~~~--~-~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv 155 (192)
.+. . |+++|+||+|.+++ ++..... ...++..+++..+|+.... .++||
T Consensus 272 ~a~k~~~psii~IdEld~l~p--~r~~~~~------------------~e~Rv~sqlltL~dg~~~~--------~~viv 323 (693)
T KOG0730|consen 272 EALKFQVPSIIFIDELDALCP--KREGADD------------------VESRVVSQLLTLLDGLKPD--------AKVIV 323 (693)
T ss_pred HHhccCCCeeEeHHhHhhhCC--cccccch------------------HHHHHHHHHHHHHhhCcCc--------CcEEE
Confidence 875 4 99999999999998 5443321 3567888999999998742 23555
Q ss_pred Ee-----CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 156 KT-----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 156 ~t-----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
++ +.||++++| |||++.+.+..|+..+|++|++.+
T Consensus 324 l~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l 363 (693)
T KOG0730|consen 324 LAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVL 363 (693)
T ss_pred EEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHH
Confidence 55 899999999 999999999999999999998764
No 38
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.3e-20 Score=172.96 Aligned_cols=161 Identities=22% Similarity=0.217 Sum_probs=129.9
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCC-----cEEEeec-----CCCC-Chh
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNF-----DVCDLEL-----TTLR-DNT 71 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~-----~~~~i~~-----~~~~-~~~ 71 (192)
++++..|.+.+..++.-+++|...++.+++|+|++||||||||+.|+++|.++.. .++.-+. .|.. .+.
T Consensus 271 ~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaER 350 (1080)
T KOG0732|consen 271 ENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAER 350 (1080)
T ss_pred HHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHH
Confidence 4578889999999999999999999999999999999999999999999998832 2221111 2222 256
Q ss_pred HHHHHHHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCC
Q 040463 72 KLRNVLIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQ 149 (192)
Q Consensus 72 ~l~~~~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~ 149 (192)
+++..|..+. .|.|+|+||||-+++ -|+..+. ..+..+...|+..||++...
T Consensus 351 qlrllFeeA~k~qPSIIffdeIdGlap--vrSskqE-----------------qih~SIvSTLLaLmdGldsR------- 404 (1080)
T KOG0732|consen 351 QLRLLFEEAQKTQPSIIFFDEIDGLAP--VRSSKQE-----------------QIHASIVSTLLALMDGLDSR------- 404 (1080)
T ss_pred HHHHHHHHHhccCceEEeccccccccc--cccchHH-----------------HhhhhHHHHHHHhccCCCCC-------
Confidence 7788887775 699999999999988 4432222 24567888999999999763
Q ss_pred cceEEEEe-----CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 150 YSQLIIKT-----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 150 ~~~iiv~t-----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
.+|+|++ +.+|++++|||||+++++||.|+.+.|.+|+..
T Consensus 405 -gqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~I 449 (1080)
T KOG0732|consen 405 -GQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDI 449 (1080)
T ss_pred -CceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHH
Confidence 3677777 899999999999999999999999999999863
No 39
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.80 E-value=1.2e-19 Score=131.70 Aligned_cols=118 Identities=26% Similarity=0.406 Sum_probs=90.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC------hhHHHHHHHhcC--C-CeEEEEeCCCccccccCccccc
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD------NTKLRNVLIATE--N-KSILAVEDIDCSINLQGRHSQA 104 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~------~~~l~~~~~~~~--~-~~Il~lDeid~l~~~~~~~~~~ 104 (192)
|||+||||||||++++.+|+.++.+++.+++..+.+ ...+...+..+. . |+|++|||+|.+.. ... .
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~--~~~-~- 76 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFP--KSQ-P- 76 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSH--HCS-T-
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccc--ccc-c-
Confidence 689999999999999999999999999999988762 345666666652 4 89999999999986 321 1
Q ss_pred cCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe----CCccccccCCCcceeEEEec
Q 040463 105 KTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT----DLTLNLLLRPGCMDMHIHMS 177 (192)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t----~~l~~~l~~~~rf~~~i~~~ 177 (192)
..+......+..++..++...... ...++|+| +.+++.+++ +||+..|++|
T Consensus 77 ---------------~~~~~~~~~~~~L~~~l~~~~~~~------~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~ 131 (132)
T PF00004_consen 77 ---------------SSSSFEQRLLNQLLSLLDNPSSKN------SRVIVIATTNSPDKIDPALLR-SRFDRRIEFP 131 (132)
T ss_dssp ---------------SSSHHHHHHHHHHHHHHHTTTTTS------SSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-
T ss_pred ---------------ccccccccccceeeeccccccccc------ccceeEEeeCChhhCCHhHHh-CCCcEEEEcC
Confidence 112344567888888888887531 22344444 889999997 7999999987
No 40
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.79 E-value=2.2e-18 Score=140.06 Aligned_cols=155 Identities=15% Similarity=0.142 Sum_probs=103.7
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCC---ccEEEEcCCCCcHHHHHHHHHHHh-------CCcEEEeecCCCCC---
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWK---RGYLLYSPPRTGKSSLTAAMANYL-------NFDVCDLELTTLRD--- 69 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~---~~ilL~GppGtGKt~l~~~ia~~~-------~~~~~~i~~~~~~~--- 69 (192)
+++|+++.+.+ .+..........|...+ .+++|+||||||||++|+++|+.+ ..+++.++++.+.+
T Consensus 12 ~~vk~~i~~~~-~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~ 90 (261)
T TIGR02881 12 DEVKALIKEIY-AWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYI 90 (261)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhc
Confidence 46777777744 44444444455565432 358999999999999999999875 23566666655432
Q ss_pred ---hhHHHHHHHhcCCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCcccccccc
Q 040463 70 ---NTKLRNVLIATENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMR 146 (192)
Q Consensus 70 ---~~~l~~~~~~~~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 146 (192)
...+...+..+ .++||||||+|.+.. ... .......+..++..++....+
T Consensus 91 g~~~~~~~~~~~~a-~~~VL~IDE~~~L~~--~~~--------------------~~~~~~~i~~Ll~~~e~~~~~---- 143 (261)
T TIGR02881 91 GHTAQKTREVIKKA-LGGVLFIDEAYSLAR--GGE--------------------KDFGKEAIDTLVKGMEDNRNE---- 143 (261)
T ss_pred cchHHHHHHHHHhc-cCCEEEEechhhhcc--CCc--------------------cchHHHHHHHHHHHHhccCCC----
Confidence 23445555554 578999999999853 111 011234566777777665321
Q ss_pred CCCcceEEEEe--------CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 147 GSQYSQLIIKT--------DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 147 ~~~~~~iiv~t--------~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
..+++++ ..++|++.+ ||+..|.||+++.+++.+|++++
T Consensus 144 ----~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~ 190 (261)
T TIGR02881 144 ----FVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERM 190 (261)
T ss_pred ----EEEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHH
Confidence 1233333 236788998 99999999999999999999876
No 41
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.78 E-value=3.8e-18 Score=140.30 Aligned_cols=157 Identities=13% Similarity=0.128 Sum_probs=109.7
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCC---CccEEEEcCCCCcHHHHHHHHHHHhC-------CcEEEeecCCCCC---
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAW---KRGYLLYSPPRTGKSSLTAAMANYLN-------FDVCDLELTTLRD--- 69 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~---~~~ilL~GppGtGKt~l~~~ia~~~~-------~~~~~i~~~~~~~--- 69 (192)
+++|+++.+ +..++..++.+...|.+. ..+++|+||||||||++|+++|+.+. .+++.+++..+..
T Consensus 28 ~~vk~~i~e-~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~ 106 (284)
T TIGR02880 28 KPVKTRIRE-IAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYI 106 (284)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhc
Confidence 467788777 444577778888888764 33699999999999999999998763 2577777654421
Q ss_pred ---hhHHHHHHHhcCCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCcccccccc
Q 040463 70 ---NTKLRNVLIATENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMR 146 (192)
Q Consensus 70 ---~~~l~~~~~~~~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 146 (192)
...+...+..+ .+++|||||++.+.. .+.. ..........|+..|+....
T Consensus 107 g~~~~~~~~~~~~a-~~gvL~iDEi~~L~~--~~~~-------------------~~~~~~~~~~Ll~~le~~~~----- 159 (284)
T TIGR02880 107 GHTAPKTKEILKRA-MGGVLFIDEAYYLYR--PDNE-------------------RDYGQEAIEILLQVMENQRD----- 159 (284)
T ss_pred ccchHHHHHHHHHc-cCcEEEEechhhhcc--CCCc-------------------cchHHHHHHHHHHHHhcCCC-----
Confidence 23444555554 569999999999853 1110 11223556777787765432
Q ss_pred CCCcceEEEEe--------CCccccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 147 GSQYSQLIIKT--------DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 147 ~~~~~~iiv~t--------~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
..+||+++ -.++|++.+ ||...|+||+++.+++.+|+++++
T Consensus 160 ---~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l 208 (284)
T TIGR02880 160 ---DLVVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLML 208 (284)
T ss_pred ---CEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHH
Confidence 22344443 134788999 999999999999999999998764
No 42
>CHL00181 cbbX CbbX; Provisional
Probab=99.78 E-value=3.4e-18 Score=140.73 Aligned_cols=157 Identities=17% Similarity=0.159 Sum_probs=107.6
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCC-cc--EEEEcCCCCcHHHHHHHHHHHhC-------CcEEEeecCCCCC---
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWK-RG--YLLYSPPRTGKSSLTAAMANYLN-------FDVCDLELTTLRD--- 69 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~-~~--ilL~GppGtGKt~l~~~ia~~~~-------~~~~~i~~~~~~~--- 69 (192)
+++|+++.+.+ .++...+.+...|...+ .+ ++|+||||||||++|+++|+.+. .+++.++...+.+
T Consensus 29 ~~vK~~i~e~~-~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~ 107 (287)
T CHL00181 29 APVKTRIREIA-ALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYI 107 (287)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHh
Confidence 46788887744 44556677777887553 23 89999999999999999999762 2577777554421
Q ss_pred ---hhHHHHHHHhcCCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCcccccccc
Q 040463 70 ---NTKLRNVLIATENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMR 146 (192)
Q Consensus 70 ---~~~l~~~~~~~~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 146 (192)
.......+..+ .++||||||++.+.. .+.. +.........|+..|+....
T Consensus 108 g~~~~~~~~~l~~a-~ggVLfIDE~~~l~~--~~~~-------------------~~~~~e~~~~L~~~me~~~~----- 160 (287)
T CHL00181 108 GHTAPKTKEVLKKA-MGGVLFIDEAYYLYK--PDNE-------------------RDYGSEAIEILLQVMENQRD----- 160 (287)
T ss_pred ccchHHHHHHHHHc-cCCEEEEEccchhcc--CCCc-------------------cchHHHHHHHHHHHHhcCCC-----
Confidence 22334455544 578999999999854 2111 11234566777777765432
Q ss_pred CCCcceEEEEe--C------CccccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 147 GSQYSQLIIKT--D------LTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 147 ~~~~~~iiv~t--~------~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
..+||+++ + .++|++.+ ||+..|+|++++.+++.+|++.++
T Consensus 161 ---~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l 209 (287)
T CHL00181 161 ---DLVVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIML 209 (287)
T ss_pred ---CEEEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHH
Confidence 22344444 2 33588999 999999999999999999998764
No 43
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.76 E-value=1.6e-17 Score=130.57 Aligned_cols=125 Identities=19% Similarity=0.234 Sum_probs=86.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHHHHHHhcCCCeEEEEeCCCccccccCccccccCCCCCCC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRNVLIATENKSILAVEDIDCSINLQGRHSQAKTLNPVNS 112 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~ 112 (192)
.+|||||||+||||+|+.+|++++.++...+...+....++...+.....+.|||||||+.+-.
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il~~l~~~~ILFIDEIHRlnk---------------- 115 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAILTNLKEGDILFIDEIHRLNK---------------- 115 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHHHT--TT-EEEECTCCC--H----------------
T ss_pred eEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHHHhcCCCcEEEEechhhccH----------------
Confidence 6999999999999999999999999999998888887888999998888899999999999854
Q ss_pred CCCCCcccCCCCCcchHHHHHHhhcCcccccccc--CC---------CcceEEEEe---CCccccccCCCcceeEEEecC
Q 040463 113 NAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMR--GS---------QYSQLIIKT---DLTLNLLLRPGCMDMHIHMSY 178 (192)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~--~~---------~~~~iiv~t---~~l~~~l~~~~rf~~~i~~~~ 178 (192)
.....|+..|+.+.-.- +- |. ++..+|-+| ..+.+.|+. ||....++.+
T Consensus 116 --------------~~qe~LlpamEd~~idi-iiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~ 178 (233)
T PF05496_consen 116 --------------AQQEILLPAMEDGKIDI-IIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEF 178 (233)
T ss_dssp --------------HHHHHHHHHHHCSEEEE-EBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE---
T ss_pred --------------HHHHHHHHHhccCeEEE-EeccccccceeeccCCCceEeeeeccccccchhHHh--hcceecchhc
Confidence 44566666665443100 00 00 123344444 677888888 9999999999
Q ss_pred CCHHHHHHHHHh
Q 040463 179 CTPCGLKMLASN 190 (192)
Q Consensus 179 p~~~~r~~i~~~ 190 (192)
++.++..+|+++
T Consensus 179 Y~~~el~~Iv~r 190 (233)
T PF05496_consen 179 YSEEELAKIVKR 190 (233)
T ss_dssp -THHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999999875
No 44
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2.2e-17 Score=134.91 Aligned_cols=161 Identities=19% Similarity=0.251 Sum_probs=111.0
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhc-----CCCCccEEEEcCCCCcHHHHHHHHHHHhC---------CcEEEeecCCCC
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVG-----RAWKRGYLLYSPPRTGKSSLTAAMANYLN---------FDVCDLELTTLR 68 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~-----~~~~~~ilL~GppGtGKt~l~~~ia~~~~---------~~~~~i~~~~~~ 68 (192)
.+.|+.++..... .-.+.+-+ ++..+-|||+||||||||+|++++|+++. -.+++++++++.
T Consensus 148 s~lK~~ll~Ya~s----~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLF 223 (423)
T KOG0744|consen 148 SNLKERLLSYAAS----ALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLF 223 (423)
T ss_pred ccHHHHHHHHHHH----HHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHH
Confidence 3455655554443 33344333 23445599999999999999999999984 346678887764
Q ss_pred C------hhHHHHHHHhcC-----C--CeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHh
Q 040463 69 D------NTKLRNVLIATE-----N--KSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNF 135 (192)
Q Consensus 69 ~------~~~l~~~~~~~~-----~--~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 135 (192)
+ ..-+..+|.+.. + -..++|||++.++. .|...... ++....-++.+.++.+
T Consensus 224 SKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~--aR~s~~S~-------------~EpsDaIRvVNalLTQ 288 (423)
T KOG0744|consen 224 SKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAA--ARTSASSR-------------NEPSDAIRVVNALLTQ 288 (423)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHH--HHHhhhcC-------------CCCchHHHHHHHHHHH
Confidence 2 233445555553 2 35567999999976 44322211 1122333788999999
Q ss_pred hcCccccccccCCCcceEEEEe----CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 136 IDGVCRAVEMRGSQYSQLIIKT----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 136 l~~~~~~~~~~~~~~~~iiv~t----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
+|.+...+ +.++++| +.+|.++.. |=|...++++|+.+.+.+|++..
T Consensus 289 lDrlK~~~-------NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~Ilksc 339 (423)
T KOG0744|consen 289 LDRLKRYP-------NVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSC 339 (423)
T ss_pred HHHhccCC-------CEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHH
Confidence 99998653 3455555 889999999 99999999999999999998754
No 45
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.5e-17 Score=138.29 Aligned_cols=133 Identities=18% Similarity=0.203 Sum_probs=101.0
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC-----hhHHHHHHHhcC---CCeEEEEeCCCccccccCcccc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD-----NTKLRNVLIATE---NKSILAVEDIDCSINLQGRHSQ 103 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~-----~~~l~~~~~~~~---~~~Il~lDeid~l~~~~~~~~~ 103 (192)
++|++|||||||||++++.+|.+.|..+..+...++.. -..++++|..+. ++-+|||||+|.++. +|...
T Consensus 385 RNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLc--eRnkt 462 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLC--ERNKT 462 (630)
T ss_pred hheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHH--Hhchh
Confidence 58999999999999999999999999998888777642 356777777664 678999999999986 55544
Q ss_pred ccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---CCccccccCCCcceeEEEecCCC
Q 040463 104 AKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNLLLRPGCMDMHIHMSYCT 180 (192)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~~l~~~l~~~~rf~~~i~~~~p~ 180 (192)
.. +......++.||-....-+. +..++++| ..+|-++.. ||+..|+||.|.
T Consensus 463 ym----------------SEaqRsaLNAlLfRTGdqSr--------divLvlAtNrpgdlDsAV~D--Ride~veFpLPG 516 (630)
T KOG0742|consen 463 YM----------------SEAQRSALNALLFRTGDQSR--------DIVLVLATNRPGDLDSAVND--RIDEVVEFPLPG 516 (630)
T ss_pred hh----------------cHHHHHHHHHHHHHhccccc--------ceEEEeccCCccchhHHHHh--hhhheeecCCCC
Confidence 22 23344556666544333321 12233344 789999999 999999999999
Q ss_pred HHHHHHHHHhcC
Q 040463 181 PCGLKMLASNYF 192 (192)
Q Consensus 181 ~~~r~~i~~~~l 192 (192)
+++|..|+..||
T Consensus 517 eEERfkll~lYl 528 (630)
T KOG0742|consen 517 EEERFKLLNLYL 528 (630)
T ss_pred hHHHHHHHHHHH
Confidence 999999998885
No 46
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.4e-15 Score=134.99 Aligned_cols=150 Identities=19% Similarity=0.231 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHH-------------
Q 040463 7 HMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKL------------- 73 (192)
Q Consensus 7 ~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l------------- 73 (192)
+.+.+.+.+|+...+....+ ...-++|+||||+|||+|++.+|+.+++.|+.++...+.+++.+
T Consensus 329 ekVKeRIlEyLAV~~l~~~~---kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPG 405 (782)
T COG0466 329 EKVKERILEYLAVQKLTKKL---KGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPG 405 (782)
T ss_pred hhHHHHHHHHHHHHHHhccC---CCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCCh
Confidence 45667777788776654422 22357889999999999999999999999999999998775544
Q ss_pred --HHHHHhcC-CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhc---------Cccc
Q 040463 74 --RNVLIATE-NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFID---------GVCR 141 (192)
Q Consensus 74 --~~~~~~~~-~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~---------~~~~ 141 (192)
.+-+.++. ..-+++|||||.+.. +-. +.++ ++||..+| ++.+
T Consensus 406 rIiQ~mkka~~~NPv~LLDEIDKm~s--s~r---------------------GDPa---SALLEVLDPEQN~~F~DhYLe 459 (782)
T COG0466 406 KIIQGMKKAGVKNPVFLLDEIDKMGS--SFR---------------------GDPA---SALLEVLDPEQNNTFSDHYLE 459 (782)
T ss_pred HHHHHHHHhCCcCCeEEeechhhccC--CCC---------------------CChH---HHHHhhcCHhhcCchhhcccc
Confidence 45555554 456788999999975 222 2233 44555454 2222
Q ss_pred cccccCCCcceEEEEe-----CCccccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 142 AVEMRGSQYSQLIIKT-----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 142 ~~~~~~~~~~~iiv~t-----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
-+ -+-..|+|++ +.||..|+. |+ ..|+++-+++++..+|.+.||
T Consensus 460 v~----yDLS~VmFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 460 VP----YDLSKVMFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred Cc----cchhheEEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhc
Confidence 11 1223455555 779999999 98 569999999999999999986
No 47
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2.9e-16 Score=139.86 Aligned_cols=151 Identities=14% Similarity=0.154 Sum_probs=107.7
Q ss_pred HHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC------hhHHHHHHHhcC--CC
Q 040463 12 DLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD------NTKLRNVLIATE--NK 83 (192)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~------~~~l~~~~~~~~--~~ 83 (192)
.+..++..++.-...+......+||+|+||||||++++++|.++|+|++.++|.++.. +..+...|.++. .|
T Consensus 412 ~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~p 491 (953)
T KOG0736|consen 412 ELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSP 491 (953)
T ss_pred HHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCc
Confidence 3444444443333333444556999999999999999999999999999999988853 457777787775 79
Q ss_pred eEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhc--CccccccccCCCcceEEEEe----
Q 040463 84 SILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFID--GVCRAVEMRGSQYSQLIIKT---- 157 (192)
Q Consensus 84 ~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~--~~~~~~~~~~~~~~~iiv~t---- 157 (192)
+|||+-++|.+.- .+.+ ++..+.+..+-..+. -+... ....++|.+
T Consensus 492 avifl~~~dvl~i--d~dg--------------------ged~rl~~~i~~~ls~e~~~~~------~~~~ivv~t~~s~ 543 (953)
T KOG0736|consen 492 AVLFLRNLDVLGI--DQDG--------------------GEDARLLKVIRHLLSNEDFKFS------CPPVIVVATTSSI 543 (953)
T ss_pred eEEEEeccceeee--cCCC--------------------chhHHHHHHHHHHHhcccccCC------CCceEEEEecccc
Confidence 9999999999964 2222 122233333332222 12111 133455555
Q ss_pred CCccccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 158 DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 158 ~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
+.+++.+++ .|.++|.++.|+++||.+|+++|+
T Consensus 544 ~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~ 576 (953)
T KOG0736|consen 544 EDLPADIQS--LFLHEIEVPALSEEQRLEILQWYL 576 (953)
T ss_pred ccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHH
Confidence 899999999 999999999999999999999984
No 48
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.65 E-value=1.5e-15 Score=127.41 Aligned_cols=113 Identities=20% Similarity=0.257 Sum_probs=89.8
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHHHHHHhcC------CCeEEEEeCCCccccccCcccccc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRNVLIATE------NKSILAVEDIDCSINLQGRHSQAK 105 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~~~~~~~~------~~~Il~lDeid~l~~~~~~~~~~~ 105 (192)
.+++|||||||||||+|+.+|..++.+|..++... .+..+++.++..+. +..|||+|||+.+-.
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK--------- 118 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNK--------- 118 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcCh---------
Confidence 47999999999999999999999999999999876 44567777777663 579999999999854
Q ss_pred CCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe-------CCccccccCCCcceeEEEecC
Q 040463 106 TLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-------DLTLNLLLRPGCMDMHIHMSY 178 (192)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-------~~l~~~l~~~~rf~~~i~~~~ 178 (192)
.-+..||-.++.- .|++++ -.+.++|++ |. ....+.+
T Consensus 119 ---------------------~QQD~lLp~vE~G------------~iilIGATTENPsF~ln~ALlS--R~-~vf~lk~ 162 (436)
T COG2256 119 ---------------------AQQDALLPHVENG------------TIILIGATTENPSFELNPALLS--RA-RVFELKP 162 (436)
T ss_pred ---------------------hhhhhhhhhhcCC------------eEEEEeccCCCCCeeecHHHhh--hh-heeeeec
Confidence 2224454444322 466666 578999999 77 5689999
Q ss_pred CCHHHHHHHHHh
Q 040463 179 CTPCGLKMLASN 190 (192)
Q Consensus 179 p~~~~r~~i~~~ 190 (192)
.+.++..+++++
T Consensus 163 L~~~di~~~l~r 174 (436)
T COG2256 163 LSSEDIKKLLKR 174 (436)
T ss_pred CCHHHHHHHHHH
Confidence 999999998876
No 49
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.3e-15 Score=133.39 Aligned_cols=155 Identities=19% Similarity=0.241 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChh-------------
Q 040463 5 MKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNT------------- 71 (192)
Q Consensus 5 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~------------- 71 (192)
-.+.+.+.+.+|+...++.. -...+-++|+||||+|||++++.||+.+++.|+..+...+.+.+
T Consensus 415 gm~dVKeRILEfiAV~kLrg---s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAM 491 (906)
T KOG2004|consen 415 GMEDVKERILEFIAVGKLRG---SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAM 491 (906)
T ss_pred chHHHHHHHHHHHHHHhhcc---cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccC
Confidence 35667777778888665422 22334478899999999999999999999999999988886543
Q ss_pred --HHHHHHHhcC-CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHH------HhhcCcccc
Q 040463 72 --KLRNVLIATE-NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLL------NFIDGVCRA 142 (192)
Q Consensus 72 --~l~~~~~~~~-~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll------~~l~~~~~~ 142 (192)
.+.+.+++.. ..-+++|||+|.+.. +..+.++..+.+++ +++|++..-
T Consensus 492 PGkiIq~LK~v~t~NPliLiDEvDKlG~-----------------------g~qGDPasALLElLDPEQNanFlDHYLdV 548 (906)
T KOG2004|consen 492 PGKIIQCLKKVKTENPLILIDEVDKLGS-----------------------GHQGDPASALLELLDPEQNANFLDHYLDV 548 (906)
T ss_pred ChHHHHHHHhhCCCCceEEeehhhhhCC-----------------------CCCCChHHHHHHhcChhhccchhhhcccc
Confidence 4566777665 445778999999975 22334444444444 233444322
Q ss_pred ccccCCCcceEEEEe-----CCccccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 143 VEMRGSQYSQLIIKT-----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 143 ~~~~~~~~~~iiv~t-----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
+ .+-.+|+|++ +.||+.|+. |+ ..|+++-+..++...|.++||
T Consensus 549 p----~DLSkVLFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 549 P----VDLSKVLFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred c----cchhheEEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhh
Confidence 1 2234555554 899999999 98 569999999999999999986
No 50
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.64 E-value=5.5e-15 Score=123.85 Aligned_cols=129 Identities=20% Similarity=0.211 Sum_probs=91.8
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHHHHHHhcCCCeEEEEeCCCccccccCccccccCCCCC
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRNVLIATENKSILAVEDIDCSINLQGRHSQAKTLNPV 110 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~Il~lDeid~l~~~~~~~~~~~~~~~~ 110 (192)
...++||||||||||++++++|+.++..+...+...+.....+...+.....+.||||||+|.+..
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~vl~IDEi~~l~~-------------- 116 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDLAAILTNLEEGDVLFIDEIHRLSP-------------- 116 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHHHHHHHHhcccCCEEEEecHhhcch--------------
Confidence 357999999999999999999999999888877776666677788887777899999999999854
Q ss_pred CCCCCCCcccCCCCCcchHHHHHHhhcCccc-----c----cccc-CCCcceEEEEe---CCccccccCCCcceeEEEec
Q 040463 111 NSNAIKPVTNVNQEPKVTLSGLLNFIDGVCR-----A----VEMR-GSQYSQLIIKT---DLTLNLLLRPGCMDMHIHMS 177 (192)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-----~----~~~~-~~~~~~iiv~t---~~l~~~l~~~~rf~~~i~~~ 177 (192)
.....+...++.... . ..++ .-+...+|.+| ..+++.+++ ||...+.++
T Consensus 117 ----------------~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~ 178 (328)
T PRK00080 117 ----------------VVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLE 178 (328)
T ss_pred ----------------HHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHH--hcCeeeecC
Confidence 111223333332210 0 0000 00011233333 578888888 999999999
Q ss_pred CCCHHHHHHHHHhc
Q 040463 178 YCTPCGLKMLASNY 191 (192)
Q Consensus 178 ~p~~~~r~~i~~~~ 191 (192)
+|+.+++.+|++..
T Consensus 179 ~~~~~e~~~il~~~ 192 (328)
T PRK00080 179 FYTVEELEKIVKRS 192 (328)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999998753
No 51
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.64 E-value=7e-15 Score=135.57 Aligned_cols=132 Identities=23% Similarity=0.238 Sum_probs=89.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCCh---------------hHHHHHHHhcC-CCeEEEEeCCCccc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDN---------------TKLRNVLIATE-NKSILAVEDIDCSI 95 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~---------------~~l~~~~~~~~-~~~Il~lDeid~l~ 95 (192)
..++|+||||||||++++++|+.++.+++.+++....+. ..+.+.+..+. .+.|++|||+|.+.
T Consensus 348 ~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~ 427 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIG 427 (775)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCCEEEEechhhcC
Confidence 469999999999999999999999999998887654322 23444555443 34589999999996
Q ss_pred cccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcC-----ccccccccCCC-cceEEEEe----CCcccccc
Q 040463 96 NLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDG-----VCRAVEMRGSQ-YSQLIIKT----DLTLNLLL 165 (192)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~-----~~~~~~~~~~~-~~~iiv~t----~~l~~~l~ 165 (192)
. ... ....+.|+..+|. +....-....+ ...++++| +.++++++
T Consensus 428 ~--~~~------------------------~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~ 481 (775)
T TIGR00763 428 S--SFR------------------------GDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLL 481 (775)
T ss_pred C--ccC------------------------CCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHh
Confidence 5 111 1123556666653 11100000001 12344555 78999999
Q ss_pred CCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 166 RPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 166 ~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
+ ||. .|.|+.|+.+++.+|++.||
T Consensus 482 ~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 482 D--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred C--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 9 995 78999999999999998764
No 52
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.62 E-value=1.2e-14 Score=120.23 Aligned_cols=129 Identities=19% Similarity=0.204 Sum_probs=89.0
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHHHHHHhcCCCeEEEEeCCCccccccCccccccCCCCC
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRNVLIATENKSILAVEDIDCSINLQGRHSQAKTLNPV 110 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~Il~lDeid~l~~~~~~~~~~~~~~~~ 110 (192)
...++||||||||||++++++|+.++.++.............+...+.....+.++||||++.+.+
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vl~iDEi~~l~~-------------- 95 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTNLEEGDVLFIDEIHRLSP-------------- 95 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHHHHhcccCCEEEEehHhhhCH--------------
Confidence 346999999999999999999999998877776665555566777777777889999999999854
Q ss_pred CCCCCCCcccCCCCCcchHHHHHHhhcCcccc--------c-cccCC-CcceEEEEe---CCccccccCCCcceeEEEec
Q 040463 111 NSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRA--------V-EMRGS-QYSQLIIKT---DLTLNLLLRPGCMDMHIHMS 177 (192)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--------~-~~~~~-~~~~iiv~t---~~l~~~l~~~~rf~~~i~~~ 177 (192)
.....+...++..... . .++-. +...++.+| ..+++.+++ ||...+.++
T Consensus 96 ----------------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~ 157 (305)
T TIGR00635 96 ----------------AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLE 157 (305)
T ss_pred ----------------HHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHh--hcceEEEeC
Confidence 1122233333221100 0 00000 011233333 568888888 998899999
Q ss_pred CCCHHHHHHHHHhc
Q 040463 178 YCTPCGLKMLASNY 191 (192)
Q Consensus 178 ~p~~~~r~~i~~~~ 191 (192)
+|+.+++.++++..
T Consensus 158 ~l~~~e~~~il~~~ 171 (305)
T TIGR00635 158 FYTVEELAEIVSRS 171 (305)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999998753
No 53
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.62 E-value=8.7e-15 Score=116.53 Aligned_cols=147 Identities=21% Similarity=0.243 Sum_probs=111.1
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCChhHHHHHHHh
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDNTKLRNVLIA 79 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~~~l~~~~~~ 79 (192)
+.||+.|.+....|+.. .+ .+++||||++|||||++++++.+++ |..++.+.-..+..-..+.+.+..
T Consensus 33 e~Qk~~l~~Nt~~Fl~G--------~p-annvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~l~~ 103 (249)
T PF05673_consen 33 ERQKEALIENTEQFLQG--------LP-ANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDLLRD 103 (249)
T ss_pred HHHHHHHHHHHHHHHcC--------CC-CcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHHHhc
Confidence 46788888888888774 33 4589999999999999999999977 678999999999988899999998
Q ss_pred cCCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe--
Q 040463 80 TENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-- 157 (192)
Q Consensus 80 ~~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-- 157 (192)
...+-||||||+.- . ......+.|...|++-.+.. +.+.+|.+|
T Consensus 104 ~~~kFIlf~DDLsF--e---------------------------~~d~~yk~LKs~LeGgle~~-----P~NvliyATSN 149 (249)
T PF05673_consen 104 RPYKFILFCDDLSF--E---------------------------EGDTEYKALKSVLEGGLEAR-----PDNVLIYATSN 149 (249)
T ss_pred CCCCEEEEecCCCC--C---------------------------CCcHHHHHHHHHhcCccccC-----CCcEEEEEecc
Confidence 77889999998653 2 12234577778888776543 244455555
Q ss_pred ----------C-------------CccccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 158 ----------D-------------LTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 158 ----------~-------------~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
+ .+++.+.=..||+..|.|.+|+.++..+|+++|+
T Consensus 150 RRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~ 207 (249)
T PF05673_consen 150 RRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYA 207 (249)
T ss_pred hhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHH
Confidence 1 1111221122999999999999999999998763
No 54
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.59 E-value=2.4e-14 Score=115.51 Aligned_cols=148 Identities=18% Similarity=0.188 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHHHHHHhcCCCeEE
Q 040463 7 HMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRNVLIATENKSIL 86 (192)
Q Consensus 7 ~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~Il 86 (192)
+++++.+.-|++..+..+ ..---+|||||||.||||||.-+|+++|..+-..+...+.....+..++-......|+
T Consensus 32 ~~vk~~L~ifI~AAk~r~----e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDlaaiLt~Le~~DVL 107 (332)
T COG2255 32 EKVKEQLQIFIKAAKKRG----EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLAAILTNLEEGDVL 107 (332)
T ss_pred HHHHHHHHHHHHHHHhcC----CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhHHHHHhcCCcCCeE
Confidence 456666667776654322 1122599999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccc--------c-c-cCCCcceEEEE
Q 040463 87 AVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAV--------E-M-RGSQYSQLIIK 156 (192)
Q Consensus 87 ~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~--------~-~-~~~~~~~iiv~ 156 (192)
|||||+.+.+ .+-.-|.-.|+.|.-.- . . ..-++..+|-+
T Consensus 108 FIDEIHrl~~------------------------------~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGA 157 (332)
T COG2255 108 FIDEIHRLSP------------------------------AVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGA 157 (332)
T ss_pred EEehhhhcCh------------------------------hHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeee
Confidence 9999999976 23344445555443210 0 0 00012234444
Q ss_pred e---CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 157 T---DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 157 t---~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
| ..+..-|+. ||+...++.+++.++..+|+++
T Consensus 158 TTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r 192 (332)
T COG2255 158 TTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKR 192 (332)
T ss_pred ccccccccchhHH--hcCCeeeeecCCHHHHHHHHHH
Confidence 4 566666777 9999999999999999999875
No 55
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.59 E-value=4.5e-14 Score=114.90 Aligned_cols=145 Identities=18% Similarity=0.137 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHHH-------
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRN------- 75 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~~------- 75 (192)
.+..+.+++.+..++.. ...++|+||||||||++|+++|+.++.+++.+++..-...+.+..
T Consensus 4 t~~~~~l~~~~l~~l~~-----------g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~ 72 (262)
T TIGR02640 4 TDAVKRVTSRALRYLKS-----------GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTR 72 (262)
T ss_pred CHHHHHHHHHHHHHHhc-----------CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccch
Confidence 34556666666666553 246999999999999999999999999999998866433222211
Q ss_pred --------------------------HHHhcCCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchH
Q 040463 76 --------------------------VLIATENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTL 129 (192)
Q Consensus 76 --------------------------~~~~~~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (192)
.+.....+.++++||++.+.+ ...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~------------------------------~~q 122 (262)
T TIGR02640 73 KKVHDQFIHNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKP------------------------------ETN 122 (262)
T ss_pred hhHHHHHHHHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCCH------------------------------HHH
Confidence 111223568999999999744 455
Q ss_pred HHHHHhhcCcccc-ccccC------C-CcceEEEEe--------CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 130 SGLLNFIDGVCRA-VEMRG------S-QYSQLIIKT--------DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 130 ~~ll~~l~~~~~~-~~~~~------~-~~~~iiv~t--------~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
+.|+..++.-.-. .+... . +..+||+.+ ..+++++++ || ..+.+++|+.++..+|++..
T Consensus 123 ~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~ 197 (262)
T TIGR02640 123 NVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAK 197 (262)
T ss_pred HHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHh
Confidence 6666666532100 00000 0 122344443 245888998 98 67999999999999998753
No 56
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.55 E-value=2.2e-14 Score=131.61 Aligned_cols=129 Identities=19% Similarity=0.194 Sum_probs=89.2
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEeecCCCCC--------hhHHHHHHHhcC--CCeEEE
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYL----------NFDVCDLELTTLRD--------NTKLRNVLIATE--NKSILA 87 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~----------~~~~~~i~~~~~~~--------~~~l~~~~~~~~--~~~Il~ 87 (192)
...+.+++|+||||||||++++++|+.+ +.+++.++++.+.. +..+.+.+..+. .++|||
T Consensus 200 ~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILf 279 (731)
T TIGR02639 200 RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILF 279 (731)
T ss_pred cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEE
Confidence 3445689999999999999999999987 67788888766542 246777777653 589999
Q ss_pred EeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe--------CC
Q 040463 88 VEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT--------DL 159 (192)
Q Consensus 88 lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t--------~~ 159 (192)
|||+|.+.+ ...... ......+-|...+. . | .-++|-+| ..
T Consensus 280 iDEih~l~~--~g~~~~-------------------~~~~~~~~L~~~l~---~-----g--~i~~IgaTt~~e~~~~~~ 328 (731)
T TIGR02639 280 IDEIHTIVG--AGATSG-------------------GSMDASNLLKPALS---S-----G--KLRCIGSTTYEEYKNHFE 328 (731)
T ss_pred EecHHHHhc--cCCCCC-------------------ccHHHHHHHHHHHh---C-----C--CeEEEEecCHHHHHHHhh
Confidence 999999976 211110 01112223333222 1 1 22333333 14
Q ss_pred ccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 160 TLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 160 l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
.|+++.| ||. .|+++.|+.+++.+|++.
T Consensus 329 ~d~al~r--Rf~-~i~v~~p~~~~~~~il~~ 356 (731)
T TIGR02639 329 KDRALSR--RFQ-KIDVGEPSIEETVKILKG 356 (731)
T ss_pred hhHHHHH--hCc-eEEeCCCCHHHHHHHHHH
Confidence 6999999 996 699999999999999984
No 57
>PRK04195 replication factor C large subunit; Provisional
Probab=99.53 E-value=2.7e-13 Score=119.10 Aligned_cols=141 Identities=20% Similarity=0.315 Sum_probs=96.2
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHHHHHHhcC-
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRNVLIATE- 81 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~~~~~~~~- 81 (192)
+++++.+.+.+..+.. |.+ +..+||+||||||||++|+++|+.++.+++.++++.......+.+.+....
T Consensus 20 ~~~~~~l~~~l~~~~~--------g~~-~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~~~~~ 90 (482)
T PRK04195 20 EKAKEQLREWIESWLK--------GKP-KKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGEAAT 90 (482)
T ss_pred HHHHHHHHHHHHHHhc--------CCC-CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHHHhhc
Confidence 4455555555544431 222 458999999999999999999999999999999988766555555544331
Q ss_pred -------CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 82 -------NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 82 -------~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
.+.+|+|||+|.+.. . ........++..++.. ...+|
T Consensus 91 ~~sl~~~~~kvIiIDEaD~L~~--~------------------------~d~~~~~aL~~~l~~~----------~~~iI 134 (482)
T PRK04195 91 SGSLFGARRKLILLDEVDGIHG--N------------------------EDRGGARAILELIKKA----------KQPII 134 (482)
T ss_pred cCcccCCCCeEEEEecCccccc--c------------------------cchhHHHHHHHHHHcC----------CCCEE
Confidence 468999999999854 1 1112345566666532 23477
Q ss_pred EEe---CCccc-cccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 155 IKT---DLTLN-LLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 155 v~t---~~l~~-~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
+++ ..+.+ .+++ |+ ..|.|++|+.+++..+++..
T Consensus 135 li~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i 172 (482)
T PRK04195 135 LTANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRI 172 (482)
T ss_pred EeccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHH
Confidence 766 34444 4554 44 67999999999998887653
No 58
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=7e-14 Score=124.07 Aligned_cols=137 Identities=20% Similarity=0.269 Sum_probs=96.0
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhC----CcEEEeecCCCCCh--hHHHHHHHhc------CCCeEEEEeCCCcccccc
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLN----FDVCDLELTTLRDN--TKLRNVLIAT------ENKSILAVEDIDCSINLQ 98 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~----~~~~~i~~~~~~~~--~~l~~~~~~~------~~~~Il~lDeid~l~~~~ 98 (192)
+.+|||+||+|||||.|++++++++. +++..++|+.+... +.++..+... ..|+|+++||+|.++.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~-- 508 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLAS-- 508 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhc--
Confidence 34799999999999999999999884 66778999888643 3344333332 2799999999999986
Q ss_pred CccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHh-hcCccccccccCCCcceEEEEe-----CCccccccCCCccee
Q 040463 99 GRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNF-IDGVCRAVEMRGSQYSQLIIKT-----DLTLNLLLRPGCMDM 172 (192)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-l~~~~~~~~~~~~~~~~iiv~t-----~~l~~~l~~~~rf~~ 172 (192)
....+.+. .+.....+..+++. +..+... +.+|.|++ ..++|.|.+|++|..
T Consensus 509 ~s~~e~~q---------------~~~~~~rla~flnqvi~~y~~~-------~~~ia~Iat~qe~qtl~~~L~s~~~Fq~ 566 (952)
T KOG0735|consen 509 ASSNENGQ---------------DGVVSERLAAFLNQVIKIYLKR-------NRKIAVIATGQELQTLNPLLVSPLLFQI 566 (952)
T ss_pred cCcccCCc---------------chHHHHHHHHHHHHHHHHHHcc-------CcEEEEEEechhhhhcChhhcCccceEE
Confidence 22211111 12223333444422 2333222 33444544 789999999999999
Q ss_pred EEEecCCCHHHHHHHHHhc
Q 040463 173 HIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 173 ~i~~~~p~~~~r~~i~~~~ 191 (192)
++.+++|+..+|.+|+++.
T Consensus 567 ~~~L~ap~~~~R~~IL~~~ 585 (952)
T KOG0735|consen 567 VIALPAPAVTRRKEILTTI 585 (952)
T ss_pred EEecCCcchhHHHHHHHHH
Confidence 9999999999999999865
No 59
>PRK06893 DNA replication initiation factor; Validated
Probab=99.50 E-value=1.6e-13 Score=109.65 Aligned_cols=123 Identities=13% Similarity=0.134 Sum_probs=81.7
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCChhHHHHHHHhcCCCeEEEEeCCCccccccCccccccCCC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDNTKLRNVLIATENKSILAVEDIDCSINLQGRHSQAKTLN 108 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~~~l~~~~~~~~~~~Il~lDeid~l~~~~~~~~~~~~~~ 108 (192)
..++||||||||||+|++++|+++ +..+.+++..... ....+.+....+..+|+|||++.+.+ .
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--~~~~~~~~~~~~~dlLilDDi~~~~~--~--------- 106 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--YFSPAVLENLEQQDLVCLDDLQAVIG--N--------- 106 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--hhhHHHHhhcccCCEEEEeChhhhcC--C---------
Confidence 358999999999999999999986 3445555543211 11224445555678999999999854 1
Q ss_pred CCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe--------CCccccccCCCcceeEEEecCCC
Q 040463 109 PVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT--------DLTLNLLLRPGCMDMHIHMSYCT 180 (192)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t--------~~l~~~l~~~~rf~~~i~~~~p~ 180 (192)
......++..++..... ...++++| ..+.+.+.+..+++..+.+++|+
T Consensus 107 -----------------~~~~~~l~~l~n~~~~~-------~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd 162 (229)
T PRK06893 107 -----------------EEWELAIFDLFNRIKEQ-------GKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLT 162 (229)
T ss_pred -----------------hHHHHHHHHHHHHHHHc-------CCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCC
Confidence 11223455656655432 22455665 22447888833445788999999
Q ss_pred HHHHHHHHHhc
Q 040463 181 PCGLKMLASNY 191 (192)
Q Consensus 181 ~~~r~~i~~~~ 191 (192)
.++|.+|+++.
T Consensus 163 ~e~~~~iL~~~ 173 (229)
T PRK06893 163 DEQKIIVLQRN 173 (229)
T ss_pred HHHHHHHHHHH
Confidence 99999998753
No 60
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.50 E-value=4.6e-13 Score=111.35 Aligned_cols=118 Identities=16% Similarity=0.147 Sum_probs=82.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHHHHHH----hc---CCCeEEEEeCCCccccccCccccc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRNVLI----AT---ENKSILAVEDIDCSINLQGRHSQA 104 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~~~~~----~~---~~~~Il~lDeid~l~~~~~~~~~~ 104 (192)
..++|+||||+|||++++++++.++.++..++++. .....++..+. .. ..+.+++|||+|.+..
T Consensus 44 ~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~-------- 114 (316)
T PHA02544 44 NMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL-------- 114 (316)
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-ccHHHHHHHHHHHHHhhcccCCCeEEEEECcccccC--------
Confidence 35666999999999999999999999999998887 33333333221 11 2578999999998732
Q ss_pred cCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---CCccccccCCCcceeEEEecCCCH
Q 040463 105 KTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNLLLRPGCMDMHIHMSYCTP 181 (192)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~~l~~~l~~~~rf~~~i~~~~p~~ 181 (192)
......+...++.... ..++|+++ ..+++.+++ ||. .+.++.|+.
T Consensus 115 ---------------------~~~~~~L~~~le~~~~--------~~~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~ 162 (316)
T PHA02544 115 ---------------------ADAQRHLRSFMEAYSK--------NCSFIITANNKNGIIEPLRS--RCR-VIDFGVPTK 162 (316)
T ss_pred ---------------------HHHHHHHHHHHHhcCC--------CceEEEEcCChhhchHHHHh--hce-EEEeCCCCH
Confidence 0122344444555433 22455555 678899998 884 689999999
Q ss_pred HHHHHHHHh
Q 040463 182 CGLKMLASN 190 (192)
Q Consensus 182 ~~r~~i~~~ 190 (192)
+++.++++.
T Consensus 163 ~~~~~il~~ 171 (316)
T PHA02544 163 EEQIEMMKQ 171 (316)
T ss_pred HHHHHHHHH
Confidence 999877654
No 61
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.49 E-value=5.8e-13 Score=112.70 Aligned_cols=127 Identities=14% Similarity=0.075 Sum_probs=79.9
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhC---------CcEEEeecCCCCChhH-----------------------------
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLN---------FDVCDLELTTLRDNTK----------------------------- 72 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~---------~~~~~i~~~~~~~~~~----------------------------- 72 (192)
+.+++++||||||||++++++++.+. ..++.++|....+...
T Consensus 40 ~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 119 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRR 119 (365)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHH
Confidence 34799999999999999999998763 4677888866543111
Q ss_pred HHHHHHhcCCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcce
Q 040463 73 LRNVLIATENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQ 152 (192)
Q Consensus 73 l~~~~~~~~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ 152 (192)
+.+.+....++.||+|||+|.+.. . ....+..++...+..... ..+..
T Consensus 120 l~~~l~~~~~~~vlvIDE~d~L~~--~-------------------------~~~~L~~l~~~~~~~~~~-----~~~v~ 167 (365)
T TIGR02928 120 LYKELNERGDSLIIVLDEIDYLVG--D-------------------------DDDLLYQLSRARSNGDLD-----NAKVG 167 (365)
T ss_pred HHHHHHhcCCeEEEEECchhhhcc--C-------------------------CcHHHHhHhccccccCCC-----CCeEE
Confidence 111111223578999999999963 1 112333443331111100 00223
Q ss_pred EEEEe------CCccccccCCCcce-eEEEecCCCHHHHHHHHHhc
Q 040463 153 LIIKT------DLTLNLLLRPGCMD-MHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 153 iiv~t------~~l~~~l~~~~rf~-~~i~~~~p~~~~r~~i~~~~ 191 (192)
+|+++ +.+++.+.+ ||. ..|.|++++.++..+|++..
T Consensus 168 lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r 211 (365)
T TIGR02928 168 VIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENR 211 (365)
T ss_pred EEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHH
Confidence 45555 356777777 664 67999999999999998753
No 62
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.49 E-value=9.1e-13 Score=121.31 Aligned_cols=132 Identities=20% Similarity=0.195 Sum_probs=90.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhH---------------HHHHHHhcC-CCeEEEEeCCCccc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTK---------------LRNVLIATE-NKSILAVEDIDCSI 95 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~---------------l~~~~~~~~-~~~Il~lDeid~l~ 95 (192)
..++|+||||+|||++++.+|..++.+++.++++...+.+. +.+.+..+. ...|++|||+|.+.
T Consensus 350 ~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~ 429 (784)
T PRK10787 350 PILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMS 429 (784)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcc
Confidence 46999999999999999999999999999988877654332 233344433 34589999999986
Q ss_pred cccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccc---ccccc--CCCcc-eEEEEe---CCccccccC
Q 040463 96 NLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCR---AVEMR--GSQYS-QLIIKT---DLTLNLLLR 166 (192)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~---~~~~~--~~~~~-~iiv~t---~~l~~~l~~ 166 (192)
. ... ......|+..+|.-.. .+.+. ..+.. .++|+| ..++++|++
T Consensus 430 ~--~~~------------------------g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aLl~ 483 (784)
T PRK10787 430 S--DMR------------------------GDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLD 483 (784)
T ss_pred c--ccC------------------------CCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHHHhc
Confidence 5 111 1234566666653100 00000 00112 344555 569999999
Q ss_pred CCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 167 PGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 167 ~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
||. .|.++.++.++..+|++.||
T Consensus 484 --R~~-ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 484 --RME-VIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred --cee-eeecCCCCHHHHHHHHHHhh
Confidence 994 69999999999999998875
No 63
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.49 E-value=4.2e-13 Score=115.81 Aligned_cols=114 Identities=19% Similarity=0.231 Sum_probs=85.1
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHHHHHHhc------CCCeEEEEeCCCccccccCcccccc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRNVLIAT------ENKSILAVEDIDCSINLQGRHSQAK 105 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~~~~~~~------~~~~Il~lDeid~l~~~~~~~~~~~ 105 (192)
.+++|+||||||||++|+++|+.++.+++.+++... +...++..+... .++.||||||+|.+..
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~--------- 106 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK--------- 106 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH---------
Confidence 479999999999999999999999999999988753 334455554443 2678999999999753
Q ss_pred CCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEE--e-----CCccccccCCCcceeEEEecC
Q 040463 106 TLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIK--T-----DLTLNLLLRPGCMDMHIHMSY 178 (192)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~--t-----~~l~~~l~~~~rf~~~i~~~~ 178 (192)
...+.|+..++.. .++++ | ..+++++++ |+ ..+.|++
T Consensus 107 ---------------------~~q~~LL~~le~~------------~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ 150 (413)
T PRK13342 107 ---------------------AQQDALLPHVEDG------------TITLIGATTENPSFEVNPALLS--RA-QVFELKP 150 (413)
T ss_pred ---------------------HHHHHHHHHhhcC------------cEEEEEeCCCChhhhccHHHhc--cc-eeeEeCC
Confidence 2334555555432 13333 2 367888998 88 6799999
Q ss_pred CCHHHHHHHHHhc
Q 040463 179 CTPCGLKMLASNY 191 (192)
Q Consensus 179 p~~~~r~~i~~~~ 191 (192)
++.++..+++++.
T Consensus 151 ls~e~i~~lL~~~ 163 (413)
T PRK13342 151 LSEEDIEQLLKRA 163 (413)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999988764
No 64
>PLN03025 replication factor C subunit; Provisional
Probab=99.48 E-value=3.3e-13 Score=112.69 Aligned_cols=117 Identities=15% Similarity=0.160 Sum_probs=84.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEeecCCCCChhHHHHHHHhc---------CCCeEEEEeCCCcccccc
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL-----NFDVCDLELTTLRDNTKLRNVLIAT---------ENKSILAVEDIDCSINLQ 98 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~-----~~~~~~i~~~~~~~~~~l~~~~~~~---------~~~~Il~lDeid~l~~~~ 98 (192)
.+|||||||||||++++++|+++ ...++.++.+...+.+.++..+... .+..|++|||+|.+..
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~-- 113 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS-- 113 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH--
Confidence 59999999999999999999987 2346677776655444454443321 2357999999999854
Q ss_pred CccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---CCccccccCCCcceeEEE
Q 040463 99 GRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNLLLRPGCMDMHIH 175 (192)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~~l~~~l~~~~rf~~~i~ 175 (192)
...+.|+..++.... ..++++++ ..+.+.+++ |+ ..++
T Consensus 114 ----------------------------~aq~aL~~~lE~~~~--------~t~~il~~n~~~~i~~~L~S--Rc-~~i~ 154 (319)
T PLN03025 114 ----------------------------GAQQALRRTMEIYSN--------TTRFALACNTSSKIIEPIQS--RC-AIVR 154 (319)
T ss_pred ----------------------------HHHHHHHHHHhcccC--------CceEEEEeCCccccchhHHH--hh-hccc
Confidence 234666666765433 22466666 677788888 77 4799
Q ss_pred ecCCCHHHHHHHHHh
Q 040463 176 MSYCTPCGLKMLASN 190 (192)
Q Consensus 176 ~~~p~~~~r~~i~~~ 190 (192)
|++|+.++....++.
T Consensus 155 f~~l~~~~l~~~L~~ 169 (319)
T PLN03025 155 FSRLSDQEILGRLMK 169 (319)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999998877764
No 65
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.47 E-value=1.4e-12 Score=103.11 Aligned_cols=146 Identities=20% Similarity=0.247 Sum_probs=109.6
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCChhHHHHHHHh
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDNTKLRNVLIA 79 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~~~l~~~~~~ 79 (192)
+.||+.+.+....|++. .+. +++||||..|||||++++|+-+++ +..+++++-..+..-..+...+..
T Consensus 66 d~qk~~L~~NT~~F~~G--------~pA-NnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~Lp~l~~~Lr~ 136 (287)
T COG2607 66 DRQKEALVRNTEQFAEG--------LPA-NNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATLPDLVELLRA 136 (287)
T ss_pred hHHHHHHHHHHHHHHcC--------Ccc-cceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhhHHHHHHHHhc
Confidence 35677777777777663 333 589999999999999999999887 567889999998888899999999
Q ss_pred cCCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe--
Q 040463 80 TENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-- 157 (192)
Q Consensus 80 ~~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-- 157 (192)
...+.||||||+.-= ........|...+++-.+.. +.+.++.+|
T Consensus 137 ~~~kFIlFcDDLSFe-----------------------------~gd~~yK~LKs~LeG~ve~r-----P~NVl~YATSN 182 (287)
T COG2607 137 RPEKFILFCDDLSFE-----------------------------EGDDAYKALKSALEGGVEGR-----PANVLFYATSN 182 (287)
T ss_pred CCceEEEEecCCCCC-----------------------------CCchHHHHHHHHhcCCcccC-----CCeEEEEEecC
Confidence 999999999996542 12245677778888776643 133444444
Q ss_pred ----------------------CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 158 ----------------------DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 158 ----------------------~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
+.+.+.+.=..||+-.+.|.+++.++..+|+.+|
T Consensus 183 RRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~ 238 (287)
T COG2607 183 RRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHY 238 (287)
T ss_pred CcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHH
Confidence 1122223333499999999999999999999876
No 66
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.46 E-value=3e-12 Score=110.20 Aligned_cols=66 Identities=27% Similarity=0.403 Sum_probs=51.5
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC--------hhHHHHHHHh------cCCCeEEEEeCCCcccc
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD--------NTKLRNVLIA------TENKSILAVEDIDCSIN 96 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~--------~~~l~~~~~~------~~~~~Il~lDeid~l~~ 96 (192)
..++||+||||||||++|+++|+.++.+++.++++.+.. ...+...+.. .+.++||||||+|.+..
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~ 187 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIAR 187 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhcc
Confidence 357999999999999999999999999999999877642 1122332222 23689999999999975
No 67
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.46 E-value=1.6e-13 Score=118.12 Aligned_cols=123 Identities=12% Similarity=0.149 Sum_probs=84.8
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEeecCCCCCh-------hHHHHHHHhcCCCeEEEEeCCCccccccC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL-----NFDVCDLELTTLRDN-------TKLRNVLIATENKSILAVEDIDCSINLQG 99 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~-----~~~~~~i~~~~~~~~-------~~l~~~~~~~~~~~Il~lDeid~l~~~~~ 99 (192)
..++||||+|+|||+|++++++++ +..++++++..+... ..+...........+|+|||++.+.+ .
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~--~ 214 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAG--K 214 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcC--C
Confidence 368999999999999999999987 566788887654321 01111222233567999999999864 1
Q ss_pred ccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe-------CCccccccCCCcce-
Q 040463 100 RHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-------DLTLNLLLRPGCMD- 171 (192)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-------~~l~~~l~~~~rf~- 171 (192)
......++..++...... ..+++.+ ..+++.+.+ ||.
T Consensus 215 --------------------------~~~~~~l~~~~n~~~~~~-------~~iiits~~~p~~l~~l~~~l~S--Rl~~ 259 (405)
T TIGR00362 215 --------------------------ERTQEEFFHTFNALHENG-------KQIVLTSDRPPKELPGLEERLRS--RFEW 259 (405)
T ss_pred --------------------------HHHHHHHHHHHHHHHHCC-------CCEEEecCCCHHHHhhhhhhhhh--hccC
Confidence 123355666666654431 2355555 357788888 885
Q ss_pred -eEEEecCCCHHHHHHHHHhc
Q 040463 172 -MHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 172 -~~i~~~~p~~~~r~~i~~~~ 191 (192)
..+.+++|+.++|.+|++..
T Consensus 260 g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 260 GLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CeEEEeCCCCHHHHHHHHHHH
Confidence 47999999999999999764
No 68
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=5.7e-13 Score=116.47 Aligned_cols=119 Identities=15% Similarity=0.237 Sum_probs=84.5
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCC------------------------cEEEeecCCCCChhHHHHHHHhcC-----
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNF------------------------DVCDLELTTLRDNTKLRNVLIATE----- 81 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~------------------------~~~~i~~~~~~~~~~l~~~~~~~~----- 81 (192)
+.++||||||||||||+|+++|+.++. .++.++.+.-.+.+.++++.....
T Consensus 36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~ 115 (472)
T PRK14962 36 SHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPME 115 (472)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhc
Confidence 346899999999999999999998754 466666654334445554443332
Q ss_pred -CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---
Q 040463 82 -NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT--- 157 (192)
Q Consensus 82 -~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t--- 157 (192)
+..|+++||+|.+.. ..++.|+..++....+ ..+|++|
T Consensus 116 ~~~kVvIIDE~h~Lt~------------------------------~a~~~LLk~LE~p~~~--------vv~Ilattn~ 157 (472)
T PRK14962 116 GKYKVYIIDEVHMLTK------------------------------EAFNALLKTLEEPPSH--------VVFVLATTNL 157 (472)
T ss_pred CCeEEEEEEChHHhHH------------------------------HHHHHHHHHHHhCCCc--------EEEEEEeCCh
Confidence 457999999999843 2456677777654332 2333444
Q ss_pred CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 158 DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 158 ~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
..+++++.+ |+ ..+.|.+++.++...+++.
T Consensus 158 ~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~ 187 (472)
T PRK14962 158 EKVPPTIIS--RC-QVIEFRNISDELIIKRLQE 187 (472)
T ss_pred HhhhHHHhc--Cc-EEEEECCccHHHHHHHHHH
Confidence 678899998 88 4799999999998887765
No 69
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=6.2e-13 Score=120.10 Aligned_cols=120 Identities=13% Similarity=0.220 Sum_probs=89.3
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCC------------------------cEEEeecCCCCChhHHHHHHHhcC-----
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNF------------------------DVCDLELTTLRDNTKLRNVLIATE----- 81 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~------------------------~~~~i~~~~~~~~~~l~~~~~~~~----- 81 (192)
+..+||+||+|||||++++.+|+.++. .++.++..+-.+.+.+++++....
T Consensus 38 ~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~ 117 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVD 117 (830)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhcccc
Confidence 346899999999999999999998854 345555544334455666665432
Q ss_pred -CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---
Q 040463 82 -NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT--- 157 (192)
Q Consensus 82 -~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t--- 157 (192)
+..|+||||+|.+.. ...+.|+..|+....+ .++|++|
T Consensus 118 gr~KVIIIDEah~LT~------------------------------~A~NALLKtLEEPP~~--------v~FILaTtd~ 159 (830)
T PRK07003 118 ARFKVYMIDEVHMLTN------------------------------HAFNAMLKTLEEPPPH--------VKFILATTDP 159 (830)
T ss_pred CCceEEEEeChhhCCH------------------------------HHHHHHHHHHHhcCCC--------eEEEEEECCh
Confidence 457999999999854 4568888888776543 3466666
Q ss_pred CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 158 DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 158 ~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
..|.+.|++ || ..++|..++.++..+.+++.
T Consensus 160 ~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~I 190 (830)
T PRK07003 160 QKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERI 190 (830)
T ss_pred hhccchhhh--he-EEEecCCcCHHHHHHHHHHH
Confidence 788899999 98 67999999999988777653
No 70
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.44 E-value=2.8e-12 Score=109.67 Aligned_cols=126 Identities=18% Similarity=0.139 Sum_probs=82.3
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEeecCCCCCh-----------------------hHH----HHHHH
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL-----NFDVCDLELTTLRDN-----------------------TKL----RNVLI 78 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~-----~~~~~~i~~~~~~~~-----------------------~~l----~~~~~ 78 (192)
+.+++++||||||||++++.+++.+ +..++.++|....+. ..+ .+.+.
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 134 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLD 134 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3479999999999999999999887 467888888654321 111 12222
Q ss_pred hcCCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe-
Q 040463 79 ATENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT- 157 (192)
Q Consensus 79 ~~~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t- 157 (192)
...++.||+|||+|.+.. . .....+..++..++..... +..+|+++
T Consensus 135 ~~~~~~viviDE~d~l~~--~------------------------~~~~~l~~l~~~~~~~~~~-------~v~vI~i~~ 181 (394)
T PRK00411 135 ERDRVLIVALDDINYLFE--K------------------------EGNDVLYSLLRAHEEYPGA-------RIGVIGISS 181 (394)
T ss_pred hcCCEEEEEECCHhHhhc--c------------------------CCchHHHHHHHhhhccCCC-------eEEEEEEEC
Confidence 223568999999999862 1 1113455555555444211 12255555
Q ss_pred -----CCccccccCCCcc-eeEEEecCCCHHHHHHHHHhc
Q 040463 158 -----DLTLNLLLRPGCM-DMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 158 -----~~l~~~l~~~~rf-~~~i~~~~p~~~~r~~i~~~~ 191 (192)
+.+++.+.+ || ...|.|++++.++..+|++..
T Consensus 182 ~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r 219 (394)
T PRK00411 182 DLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDR 219 (394)
T ss_pred CcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHH
Confidence 345666666 55 357899999999999998753
No 71
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.44 E-value=4.2e-13 Score=122.89 Aligned_cols=127 Identities=17% Similarity=0.236 Sum_probs=81.5
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEeecCCCCC--------hhHHHHHHHhc--CCCeEEE
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYL----------NFDVCDLELTTLRD--------NTKLRNVLIAT--ENKSILA 87 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~----------~~~~~~i~~~~~~~--------~~~l~~~~~~~--~~~~Il~ 87 (192)
...+.++||+||||||||++|+++|... +..++.++...+.. +..+...+... ..++|||
T Consensus 204 r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILf 283 (758)
T PRK11034 204 RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILF 283 (758)
T ss_pred ccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEE
Confidence 3345689999999999999999999864 34455544433321 23344554433 3579999
Q ss_pred EeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe----------
Q 040463 88 VEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---------- 157 (192)
Q Consensus 88 lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---------- 157 (192)
|||+|.+.+ ...... .. ..+.+.+..+... | .+.+++
T Consensus 284 IDEIh~L~g--~g~~~~-------------------g~----~d~~nlLkp~L~~----g----~i~vIgATt~~E~~~~ 330 (758)
T PRK11034 284 IDEIHTIIG--AGAASG-------------------GQ----VDAANLIKPLLSS----G----KIRVIGSTTYQEFSNI 330 (758)
T ss_pred eccHHHHhc--cCCCCC-------------------cH----HHHHHHHHHHHhC----C----CeEEEecCChHHHHHH
Confidence 999999976 221110 00 1122233333222 1 344444
Q ss_pred CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 158 DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 158 ~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
...|++|.| ||. .|.++.|+.+++.+|++.
T Consensus 331 ~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~ 360 (758)
T PRK11034 331 FEKDRALAR--RFQ-KIDITEPSIEETVQIING 360 (758)
T ss_pred hhccHHHHh--hCc-EEEeCCCCHHHHHHHHHH
Confidence 146999999 995 799999999999999874
No 72
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.44 E-value=1e-12 Score=122.06 Aligned_cols=128 Identities=16% Similarity=0.140 Sum_probs=85.0
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEeecCCCCC--------hhHHHHHHHhcC---CCeEE
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYL----------NFDVCDLELTTLRD--------NTKLRNVLIATE---NKSIL 86 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~----------~~~~~~i~~~~~~~--------~~~l~~~~~~~~---~~~Il 86 (192)
.....+++|+||||||||++++.+|+.+ +.+++.++.+.+.. ...+++.+.... .++||
T Consensus 205 r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~IL 284 (852)
T TIGR03345 205 RRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIIL 284 (852)
T ss_pred cCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEE
Confidence 3345689999999999999999999976 24566666665431 246667776553 57999
Q ss_pred EEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe--------C
Q 040463 87 AVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT--------D 158 (192)
Q Consensus 87 ~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t--------~ 158 (192)
||||++.+.+ ...... .....+-|+-.+ .. | .-++|-+| -
T Consensus 285 fIDEih~l~~--~g~~~~--------------------~~d~~n~Lkp~l----~~----G--~l~~IgaTT~~e~~~~~ 332 (852)
T TIGR03345 285 FIDEAHTLIG--AGGQAG--------------------QGDAANLLKPAL----AR----G--ELRTIAATTWAEYKKYF 332 (852)
T ss_pred EEeChHHhcc--CCCccc--------------------cccHHHHhhHHh----hC----C--CeEEEEecCHHHHhhhh
Confidence 9999999976 221110 011112222222 21 1 22344444 1
Q ss_pred CccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 159 LTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 159 ~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
.+|++|.| ||. .|.++.|+.+++.+|++.
T Consensus 333 ~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~ 361 (852)
T TIGR03345 333 EKDPALTR--RFQ-VVKVEEPDEETAIRMLRG 361 (852)
T ss_pred hccHHHHH--hCe-EEEeCCCCHHHHHHHHHH
Confidence 37999999 994 799999999999999653
No 73
>PRK08727 hypothetical protein; Validated
Probab=99.44 E-value=7.2e-13 Score=106.08 Aligned_cols=120 Identities=20% Similarity=0.227 Sum_probs=84.2
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCChhHHHHHHHhcCCCeEEEEeCCCccccccCccccccCCC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDNTKLRNVLIATENKSILAVEDIDCSINLQGRHSQAKTLN 108 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~~~l~~~~~~~~~~~Il~lDeid~l~~~~~~~~~~~~~~ 108 (192)
..++||||+|||||+++.++++.+ +..+.+++..... ..+.+.+.......+|+|||++.+.. .
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--~~~~~~~~~l~~~dlLiIDDi~~l~~--~--------- 108 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--GRLRDALEALEGRSLVALDGLESIAG--Q--------- 108 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--hhHHHHHHHHhcCCEEEEeCcccccC--C---------
Confidence 359999999999999999998775 4556666655433 34455666666778999999998864 1
Q ss_pred CCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe-------CCccccccCCCcc--eeEEEecCC
Q 040463 109 PVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-------DLTLNLLLRPGCM--DMHIHMSYC 179 (192)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-------~~l~~~l~~~~rf--~~~i~~~~p 179 (192)
......++..++..... ...+|+++ ..+++.+.+ || ...+.+++|
T Consensus 109 -----------------~~~~~~lf~l~n~~~~~-------~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~ 162 (233)
T PRK08727 109 -----------------REDEVALFDFHNRARAA-------GITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVL 162 (233)
T ss_pred -----------------hHHHHHHHHHHHHHHHc-------CCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCC
Confidence 11223444555444322 22466666 345788888 86 567899999
Q ss_pred CHHHHHHHHHh
Q 040463 180 TPCGLKMLASN 190 (192)
Q Consensus 180 ~~~~r~~i~~~ 190 (192)
+.+++.+|++.
T Consensus 163 ~~e~~~~iL~~ 173 (233)
T PRK08727 163 DDVARAAVLRE 173 (233)
T ss_pred CHHHHHHHHHH
Confidence 99999999985
No 74
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.44 E-value=2.2e-13 Score=118.76 Aligned_cols=123 Identities=13% Similarity=0.180 Sum_probs=86.1
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEeecCCCCCh-------hHHHHHHHhcCCCeEEEEeCCCccccccC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL-----NFDVCDLELTTLRDN-------TKLRNVLIATENKSILAVEDIDCSINLQG 99 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~-----~~~~~~i~~~~~~~~-------~~l~~~~~~~~~~~Il~lDeid~l~~~~~ 99 (192)
+.++||||||+|||+|++++++++ +..++++++..+... ..............+|+|||++.+.+ .
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~--~ 226 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAG--K 226 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcC--C
Confidence 469999999999999999999987 456778887665321 01112222334678999999999854 1
Q ss_pred ccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe-------CCccccccCCCcce-
Q 040463 100 RHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-------DLTLNLLLRPGCMD- 171 (192)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-------~~l~~~l~~~~rf~- 171 (192)
......++..++.+.+.. ..+++.+ ..+++.+.+ ||.
T Consensus 227 --------------------------~~~~~~l~~~~n~l~~~~-------~~iiits~~~p~~l~~l~~~l~S--Rl~~ 271 (450)
T PRK00149 227 --------------------------ERTQEEFFHTFNALHEAG-------KQIVLTSDRPPKELPGLEERLRS--RFEW 271 (450)
T ss_pred --------------------------HHHHHHHHHHHHHHHHCC-------CcEEEECCCCHHHHHHHHHHHHh--HhcC
Confidence 123456666666665432 2355544 237788888 885
Q ss_pred -eEEEecCCCHHHHHHHHHhc
Q 040463 172 -MHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 172 -~~i~~~~p~~~~r~~i~~~~ 191 (192)
..+.+.+|+.++|.+|++..
T Consensus 272 gl~v~i~~pd~~~r~~il~~~ 292 (450)
T PRK00149 272 GLTVDIEPPDLETRIAILKKK 292 (450)
T ss_pred CeeEEecCCCHHHHHHHHHHH
Confidence 57999999999999999764
No 75
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.43 E-value=7.2e-13 Score=110.11 Aligned_cols=129 Identities=12% Similarity=0.115 Sum_probs=86.4
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHHHH-------------------HHhcCCCeEEEEeC
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRNV-------------------LIATENKSILAVED 90 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~~~-------------------~~~~~~~~Il~lDe 90 (192)
.++.|+|.||||||||++++.+|+.++.+++.++++......++... ......++++++||
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDE 142 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDE 142 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEech
Confidence 34679999999999999999999999999999988776543222110 01113578899999
Q ss_pred CCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcC---cc--ccccccCCCcceEEEEe--------
Q 040463 91 IDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDG---VC--RAVEMRGSQYSQLIIKT-------- 157 (192)
Q Consensus 91 id~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~---~~--~~~~~~~~~~~~iiv~t-------- 157 (192)
+|..-+ .++..|...++. +. ...+.-.......+|+|
T Consensus 143 in~a~p------------------------------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd 192 (327)
T TIGR01650 143 YDAGRP------------------------------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGD 192 (327)
T ss_pred hhccCH------------------------------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCC
Confidence 998754 344444444431 11 11100000113345555
Q ss_pred --------CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 158 --------DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 158 --------~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
..+++++++ ||-..+.+++|+.+...+|+..
T Consensus 193 ~~G~y~Gt~~l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~ 231 (327)
T TIGR01650 193 TTGLYHGTQQINQAQMD--RWSIVTTLNYLEHDNEAAIVLA 231 (327)
T ss_pred CCcceeeeecCCHHHHh--heeeEeeCCCCCHHHHHHHHHh
Confidence 245789999 9988899999999999999864
No 76
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=7.6e-13 Score=114.96 Aligned_cols=118 Identities=14% Similarity=0.258 Sum_probs=82.7
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEeecCCCCChhHHHHHHHhc------C
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFD------------------------VCDLELTTLRDNTKLRNVLIAT------E 81 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~------------------------~~~i~~~~~~~~~~l~~~~~~~------~ 81 (192)
..+||+||+|||||++|+.+|+.++.. ++.++...-.+.+.+++..... .
T Consensus 41 ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g 120 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGG 120 (484)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcC
Confidence 358999999999999999999988652 4444443323334444433322 2
Q ss_pred CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---C
Q 040463 82 NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---D 158 (192)
Q Consensus 82 ~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~ 158 (192)
+..|+||||+|.+.. ..++.|+..++.-..+ ..+|++| .
T Consensus 121 ~~KV~IIDEah~Ls~------------------------------~A~NALLKtLEEPp~~--------viFILaTte~~ 162 (484)
T PRK14956 121 KYKVYIIDEVHMLTD------------------------------QSFNALLKTLEEPPAH--------IVFILATTEFH 162 (484)
T ss_pred CCEEEEEechhhcCH------------------------------HHHHHHHHHhhcCCCc--------eEEEeecCChh
Confidence 457999999999854 4678888888664332 2334444 7
Q ss_pred CccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 159 LTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 159 ~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
.+.+.+++ |+ ..+.|..++.++..+.+++
T Consensus 163 kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~ 191 (484)
T PRK14956 163 KIPETILS--RC-QDFIFKKVPLSVLQDYSEK 191 (484)
T ss_pred hccHHHHh--hh-heeeecCCCHHHHHHHHHH
Confidence 88999999 88 5689999998877766654
No 77
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.43 E-value=1.2e-12 Score=103.73 Aligned_cols=122 Identities=16% Similarity=0.127 Sum_probs=81.6
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCChhHHHHHHHhcCCCeEEEEeCCCccccccCccccccCC
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDNTKLRNVLIATENKSILAVEDIDCSINLQGRHSQAKTL 107 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~~~l~~~~~~~~~~~Il~lDeid~l~~~~~~~~~~~~~ 107 (192)
+..++|+||+|||||++++++++.+ +.+++.+++..+... ....+.......+|+|||+|.+.. .
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~lLvIDdi~~l~~--~-------- 105 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQA--DPEVLEGLEQADLVCLDDVEAIAG--Q-------- 105 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHh--HHHHHhhcccCCEEEEeChhhhcC--C--------
Confidence 4579999999999999999999876 467888888776532 233444444567999999999753 0
Q ss_pred CCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEeC----C--cc-ccccCCCcc--eeEEEecC
Q 040463 108 NPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKTD----L--TL-NLLLRPGCM--DMHIHMSY 178 (192)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t~----~--l~-~~l~~~~rf--~~~i~~~~ 178 (192)
......+...++..... ...+|+.+. . +. +.+.+ |+ ...+.+|+
T Consensus 106 ------------------~~~~~~L~~~l~~~~~~-------~~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~ 158 (226)
T TIGR03420 106 ------------------PEWQEALFHLYNRVREA-------GGRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPP 158 (226)
T ss_pred ------------------hHHHHHHHHHHHHHHHc-------CCeEEEECCCChHHCCcccHHHHH--HHhcCeeEecCC
Confidence 01134455555443322 123555441 1 22 56666 66 47899999
Q ss_pred CCHHHHHHHHHhc
Q 040463 179 CTPCGLKMLASNY 191 (192)
Q Consensus 179 p~~~~r~~i~~~~ 191 (192)
|+.+++..+++.+
T Consensus 159 l~~~e~~~~l~~~ 171 (226)
T TIGR03420 159 LSDEEKIAALQSR 171 (226)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999988754
No 78
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=6.1e-13 Score=118.67 Aligned_cols=118 Identities=14% Similarity=0.245 Sum_probs=88.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCC-----------------------------cEEEeecCCCCChhHHHHHHHhcC-
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNF-----------------------------DVCDLELTTLRDNTKLRNVLIATE- 81 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~-----------------------------~~~~i~~~~~~~~~~l~~~~~~~~- 81 (192)
..+||+||+|+|||++++.+|+.+.. .++.++..+..+.+++++++....
T Consensus 39 HA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~ 118 (700)
T PRK12323 39 HAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVY 118 (700)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHh
Confidence 46899999999999999999998865 344455444334456666655432
Q ss_pred -----CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEE
Q 040463 82 -----NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIK 156 (192)
Q Consensus 82 -----~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~ 156 (192)
+..|+||||+|.+.. ...+.|+..|+.-.. +..+|++
T Consensus 119 ~P~~gr~KViIIDEah~Ls~------------------------------~AaNALLKTLEEPP~--------~v~FILa 160 (700)
T PRK12323 119 APTAGRFKVYMIDEVHMLTN------------------------------HAFNAMLKTLEEPPE--------HVKFILA 160 (700)
T ss_pred chhcCCceEEEEEChHhcCH------------------------------HHHHHHHHhhccCCC--------CceEEEE
Confidence 457999999999854 457888888877543 3356666
Q ss_pred e---CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 157 T---DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 157 t---~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
| ..|.+.+++ |+ ..+.|..++.++..+.+++
T Consensus 161 Ttep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~ 194 (700)
T PRK12323 161 TTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDA 194 (700)
T ss_pred eCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHH
Confidence 6 788999999 98 6799999999988877654
No 79
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.42 E-value=2.4e-12 Score=110.22 Aligned_cols=119 Identities=15% Similarity=0.174 Sum_probs=84.3
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhCCc-----------------------EEEeecC-CCCChhHHHHHHHhcC----
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANYLNFD-----------------------VCDLELT-TLRDNTKLRNVLIATE---- 81 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~~~~~-----------------------~~~i~~~-~~~~~~~l~~~~~~~~---- 81 (192)
.+.++||+||||+|||++|+++|+.+..+ +..+... ...+-+++++++..+.
T Consensus 35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~ 114 (394)
T PRK07940 35 MTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPS 114 (394)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcc
Confidence 45679999999999999999999977442 2222221 1123455666665443
Q ss_pred --CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe--
Q 040463 82 --NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-- 157 (192)
Q Consensus 82 --~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-- 157 (192)
+..|++|||+|.+.. ...+.|+..++....+ ..+|++|
T Consensus 115 ~~~~kViiIDead~m~~------------------------------~aanaLLk~LEep~~~--------~~fIL~a~~ 156 (394)
T PRK07940 115 TGRWRIVVIEDADRLTE------------------------------RAANALLKAVEEPPPR--------TVWLLCAPS 156 (394)
T ss_pred cCCcEEEEEechhhcCH------------------------------HHHHHHHHHhhcCCCC--------CeEEEEECC
Confidence 346999999999854 3457788888765432 2344444
Q ss_pred -CCccccccCCCcceeEEEecCCCHHHHHHHHH
Q 040463 158 -DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLAS 189 (192)
Q Consensus 158 -~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~ 189 (192)
+.+.|.+++ |+ ..+.|++|+.++..+++.
T Consensus 157 ~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~ 186 (394)
T PRK07940 157 PEDVLPTIRS--RC-RHVALRTPSVEAVAEVLV 186 (394)
T ss_pred hHHChHHHHh--hC-eEEECCCCCHHHHHHHHH
Confidence 788999998 88 689999999999887774
No 80
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.41 E-value=2e-12 Score=120.35 Aligned_cols=128 Identities=16% Similarity=0.185 Sum_probs=86.0
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEeecCCCCC--------hhHHHHHHHhc---CCCeEE
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYL----------NFDVCDLELTTLRD--------NTKLRNVLIAT---ENKSIL 86 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~----------~~~~~~i~~~~~~~--------~~~l~~~~~~~---~~~~Il 86 (192)
...+.+++|+||||||||++++++|..+ +.+++.++...+.. +..+...+... ..++||
T Consensus 196 r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~IL 275 (857)
T PRK10865 196 RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVIL 275 (857)
T ss_pred cCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEE
Confidence 3345689999999999999999999987 67888877766532 23566666543 368999
Q ss_pred EEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---C-----
Q 040463 87 AVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---D----- 158 (192)
Q Consensus 87 ~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~----- 158 (192)
||||+|.+.+ ...... .....+- +...... | .-++|-+| +
T Consensus 276 fIDEih~l~~--~~~~~~--------------------~~d~~~~----lkp~l~~----g--~l~~IgaTt~~e~r~~~ 323 (857)
T PRK10865 276 FIDELHTMVG--AGKADG--------------------AMDAGNM----LKPALAR----G--ELHCVGATTLDEYRQYI 323 (857)
T ss_pred EEecHHHhcc--CCCCcc--------------------chhHHHH----hcchhhc----C--CCeEEEcCCCHHHHHHh
Confidence 9999999976 211110 0011122 2222221 2 22333333 2
Q ss_pred CccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 159 LTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 159 ~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
.+|+++.| ||. .|.++.|+.+++.+|++.
T Consensus 324 ~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~ 352 (857)
T PRK10865 324 EKDAALER--RFQ-KVFVAEPSVEDTIAILRG 352 (857)
T ss_pred hhcHHHHh--hCC-EEEeCCCCHHHHHHHHHH
Confidence 37999999 996 588999999999998864
No 81
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.41 E-value=1.3e-12 Score=104.71 Aligned_cols=121 Identities=17% Similarity=0.163 Sum_probs=80.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhC---CcEEEeecCCCCChhHHHHHHHhcCCCeEEEEeCCCccccccCccccccCCC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLN---FDVCDLELTTLRDNTKLRNVLIATENKSILAVEDIDCSINLQGRHSQAKTLN 108 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~---~~~~~i~~~~~~~~~~l~~~~~~~~~~~Il~lDeid~l~~~~~~~~~~~~~~ 108 (192)
..++||||+|||||++++++++++. ..+.+++...... .....+....+-.+|+|||++.+..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--~~~~~~~~~~~~dlliiDdi~~~~~------------ 111 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--FVPEVLEGMEQLSLVCIDNIECIAG------------ 111 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--hhHHHHHHhhhCCEEEEeChhhhcC------------
Confidence 4799999999999999999998764 3455555544221 1122222333346899999999854
Q ss_pred CCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe-------CCccccccCCCcce--eEEEecCC
Q 040463 109 PVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-------DLTLNLLLRPGCMD--MHIHMSYC 179 (192)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-------~~l~~~l~~~~rf~--~~i~~~~p 179 (192)
.......+...++...++. ..++++.+ ..+.+.+++ |+. ..+.+.+|
T Consensus 112 ----------------~~~~~~~lf~l~n~~~e~g------~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~ 167 (235)
T PRK08084 112 ----------------DELWEMAIFDLYNRILESG------RTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPL 167 (235)
T ss_pred ----------------CHHHHHHHHHHHHHHHHcC------CCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCC
Confidence 1123344555555554321 23466666 336788998 875 77999999
Q ss_pred CHHHHHHHHHh
Q 040463 180 TPCGLKMLASN 190 (192)
Q Consensus 180 ~~~~r~~i~~~ 190 (192)
+.+++.+++++
T Consensus 168 ~~~~~~~~l~~ 178 (235)
T PRK08084 168 SDEEKLQALQL 178 (235)
T ss_pred CHHHHHHHHHH
Confidence 99999999875
No 82
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.41 E-value=3.6e-12 Score=108.80 Aligned_cols=37 Identities=22% Similarity=0.385 Sum_probs=33.6
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCC
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTL 67 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~ 67 (192)
+.++||+||||||||++++++|..++.+++.++++.+
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~ 83 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 83 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEEEeeccee
Confidence 4689999999999999999999999999999887644
No 83
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.40 E-value=5.3e-13 Score=105.92 Aligned_cols=122 Identities=17% Similarity=0.205 Sum_probs=84.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEeecCCCCC-------hhHHHHHHHhcCCCeEEEEeCCCccccccCc
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL-----NFDVCDLELTTLRD-------NTKLRNVLIATENKSILAVEDIDCSINLQGR 100 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~-----~~~~~~i~~~~~~~-------~~~l~~~~~~~~~~~Il~lDeid~l~~~~~~ 100 (192)
.++||||+|+|||+|++++++++ +..++++++..+.. ...+.++........+|+|||++.+.+
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~---- 111 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAG---- 111 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTT----
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcC----
Confidence 48999999999999999999875 46678887766532 122333444556789999999999865
Q ss_pred cccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe-------CCccccccCCCcce--
Q 040463 101 HSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-------DLTLNLLLRPGCMD-- 171 (192)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-------~~l~~~l~~~~rf~-- 171 (192)
......++...++.+... ..++|+.+ ..+++.+.+ ||.
T Consensus 112 ------------------------~~~~q~~lf~l~n~~~~~-------~k~li~ts~~~P~~l~~~~~~L~S--Rl~~G 158 (219)
T PF00308_consen 112 ------------------------KQRTQEELFHLFNRLIES-------GKQLILTSDRPPSELSGLLPDLRS--RLSWG 158 (219)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHT-------TSEEEEEESS-TTTTTTS-HHHHH--HHHCS
T ss_pred ------------------------chHHHHHHHHHHHHHHhh-------CCeEEEEeCCCCccccccChhhhh--hHhhc
Confidence 234567788888877654 23566666 346777777 764
Q ss_pred eEEEecCCCHHHHHHHHHhc
Q 040463 172 MHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 172 ~~i~~~~p~~~~r~~i~~~~ 191 (192)
..+.+.+|+.+.|.+|++++
T Consensus 159 l~~~l~~pd~~~r~~il~~~ 178 (219)
T PF00308_consen 159 LVVELQPPDDEDRRRILQKK 178 (219)
T ss_dssp EEEEE----HHHHHHHHHHH
T ss_pred chhhcCCCCHHHHHHHHHHH
Confidence 47899999999999999764
No 84
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=2.6e-12 Score=109.17 Aligned_cols=119 Identities=13% Similarity=0.233 Sum_probs=82.7
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCC------------------------cEEEeecCCCCChhHHHHHHHhcC-----
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNF------------------------DVCDLELTTLRDNTKLRNVLIATE----- 81 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~------------------------~~~~i~~~~~~~~~~l~~~~~~~~----- 81 (192)
+..+||+||||+|||++|+++|+.+.. .+..++.+.....+.+++.+....
T Consensus 38 ~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~ 117 (363)
T PRK14961 38 HHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSK 117 (363)
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCccc
Confidence 346899999999999999999998753 233343332223345555554432
Q ss_pred -CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---
Q 040463 82 -NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT--- 157 (192)
Q Consensus 82 -~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t--- 157 (192)
+..|++|||+|.+.. ...+.++..++.... ...+|++|
T Consensus 118 ~~~kviIIDEa~~l~~------------------------------~a~naLLk~lEe~~~--------~~~fIl~t~~~ 159 (363)
T PRK14961 118 SRFKVYLIDEVHMLSR------------------------------HSFNALLKTLEEPPQ--------HIKFILATTDV 159 (363)
T ss_pred CCceEEEEEChhhcCH------------------------------HHHHHHHHHHhcCCC--------CeEEEEEcCCh
Confidence 356999999999743 345677777766543 22455555
Q ss_pred CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 158 DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 158 ~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
+.+.+.+.+ |+ ..++|++|+.++..+++++
T Consensus 160 ~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~ 189 (363)
T PRK14961 160 EKIPKTILS--RC-LQFKLKIISEEKIFNFLKY 189 (363)
T ss_pred HhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHH
Confidence 677788887 87 5799999999999887764
No 85
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.40 E-value=5.4e-12 Score=91.65 Aligned_cols=114 Identities=23% Similarity=0.288 Sum_probs=74.0
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCChhHHHH-----------HHHhcCCCeEEEEeCCCcccc
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDNTKLRN-----------VLIATENKSILAVEDIDCSIN 96 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~~~l~~-----------~~~~~~~~~Il~lDeid~l~~ 96 (192)
...++++||||||||++++.+++.+ +.+++.+++........... .......+.++++||++.+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~ 98 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR 98 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH
Confidence 3579999999999999999999998 88899888877654332221 112223689999999998732
Q ss_pred ccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---C--CccccccCCCcce
Q 040463 97 LQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---D--LTLNLLLRPGCMD 171 (192)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~--~l~~~l~~~~rf~ 171 (192)
.....+...+........ ......+++++ . .+++.+.+ ||+
T Consensus 99 ------------------------------~~~~~~~~~i~~~~~~~~--~~~~~~ii~~~~~~~~~~~~~~~~~--r~~ 144 (151)
T cd00009 99 ------------------------------GAQNALLRVLETLNDLRI--DRENVRVIGATNRPLLGDLDRALYD--RLD 144 (151)
T ss_pred ------------------------------HHHHHHHHHHHhcCceec--cCCCeEEEEecCccccCCcChhHHh--hhc
Confidence 123444444444432100 00133455555 2 56777777 998
Q ss_pred eEEEecC
Q 040463 172 MHIHMSY 178 (192)
Q Consensus 172 ~~i~~~~ 178 (192)
.++.+++
T Consensus 145 ~~i~~~~ 151 (151)
T cd00009 145 IRIVIPL 151 (151)
T ss_pred cEeecCC
Confidence 8887763
No 86
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.40 E-value=3.2e-12 Score=109.22 Aligned_cols=37 Identities=22% Similarity=0.385 Sum_probs=33.4
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCC
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTL 67 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~ 67 (192)
+.++||+||||||||++++++|+.++.+++.++++.+
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f 86 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 86 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecchhh
Confidence 4689999999999999999999999999999887644
No 87
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=8.1e-12 Score=106.01 Aligned_cols=122 Identities=16% Similarity=0.161 Sum_probs=84.8
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhCCc-----EEEeecCCCCChhHHHHH-------------------------HHh
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANYLNFD-----VCDLELTTLRDNTKLRNV-------------------------LIA 79 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~~~~~-----~~~i~~~~~~~~~~l~~~-------------------------~~~ 79 (192)
.|.++++|||||||||.+++.+++++... +++++|....+..++... +..
T Consensus 41 ~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~ 120 (366)
T COG1474 41 RPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSK 120 (366)
T ss_pred CCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHh
Confidence 34469999999999999999999998544 889999887653332222 222
Q ss_pred cCCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe--
Q 040463 80 TENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-- 157 (192)
Q Consensus 80 ~~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-- 157 (192)
.....|+++||+|.+.. . ....+-.|+...... ..++.+++
T Consensus 121 ~~~~~IvvLDEid~L~~--~-------------------------~~~~LY~L~r~~~~~----------~~~v~vi~i~ 163 (366)
T COG1474 121 KGKTVIVILDEVDALVD--K-------------------------DGEVLYSLLRAPGEN----------KVKVSIIAVS 163 (366)
T ss_pred cCCeEEEEEcchhhhcc--c-------------------------cchHHHHHHhhcccc----------ceeEEEEEEe
Confidence 23578999999999976 1 113344444443333 22355444
Q ss_pred ------CCccccccCCCcc-eeEEEecCCCHHHHHHHHHh
Q 040463 158 ------DLTLNLLLRPGCM-DMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 158 ------~~l~~~l~~~~rf-~~~i~~~~p~~~~r~~i~~~ 190 (192)
+.+++.+.+ ++ ..+|.||+++.+|...|+..
T Consensus 164 n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~ 201 (366)
T COG1474 164 NDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRE 201 (366)
T ss_pred ccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHH
Confidence 567888887 54 45599999999999999864
No 88
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.39 E-value=3.2e-12 Score=117.17 Aligned_cols=128 Identities=12% Similarity=0.232 Sum_probs=89.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHHHHHH------------------hcCCCeEEEEeCCCcc
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRNVLI------------------ATENKSILAVEDIDCS 94 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~~~~~------------------~~~~~~Il~lDeid~l 94 (192)
.+||+||||||||++|+++|+.++.+++.++++.+.....+..++. .....+|+||||+|.+
T Consensus 490 ~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhh
Confidence 5899999999999999999999999999999887754222221111 1123589999999998
Q ss_pred ccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccc-cccCCC-cceEEEEeC--------------
Q 040463 95 INLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAV-EMRGSQ-YSQLIIKTD-------------- 158 (192)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-~~~~~~-~~~iiv~t~-------------- 158 (192)
.+ .+.+.|+..++.-.-.+ .-+..+ ...|+|+|.
T Consensus 570 ~~------------------------------~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~ 619 (758)
T PRK11034 570 HP------------------------------DVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGL 619 (758)
T ss_pred hH------------------------------HHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCc
Confidence 65 46778888876432111 000001 234666661
Q ss_pred ---------------CccccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 159 ---------------LTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 159 ---------------~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
.+.|.++. |++..|.|++++.++..+|+..+|
T Consensus 620 ~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l 666 (758)
T PRK11034 620 IHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFI 666 (758)
T ss_pred ccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHH
Confidence 13356666 999999999999999999987653
No 89
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.39 E-value=1.5e-11 Score=105.64 Aligned_cols=65 Identities=29% Similarity=0.406 Sum_probs=50.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC--------hhHHHHHHHhc------CCCeEEEEeCCCcccc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD--------NTKLRNVLIAT------ENKSILAVEDIDCSIN 96 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~--------~~~l~~~~~~~------~~~~Il~lDeid~l~~ 96 (192)
.++||+||||||||++|+++|..++.++..++++.+.. ...+...+... +.++||||||+|.+..
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~ 195 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR 195 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhch
Confidence 47999999999999999999999999998888776532 12233333322 3578999999999875
No 90
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=3.1e-12 Score=114.44 Aligned_cols=119 Identities=11% Similarity=0.188 Sum_probs=87.4
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCC------------------------cEEEeecCCCCChhHHHHHHHhc------
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNF------------------------DVCDLELTTLRDNTKLRNVLIAT------ 80 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~------------------------~~~~i~~~~~~~~~~l~~~~~~~------ 80 (192)
+..+||+||+|+|||++|+++|+.++. .++.++.++-.+.+++++++...
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~ 116 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQ 116 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhc
Confidence 347899999999999999999998854 45555555444455666665544
Q ss_pred CCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---
Q 040463 81 ENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT--- 157 (192)
Q Consensus 81 ~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t--- 157 (192)
.+..|++|||+|.+.. ...+.|+..++.... ...+|++|
T Consensus 117 gk~KV~IIDEVh~LS~------------------------------~A~NALLKtLEEPP~--------~v~FILaTtd~ 158 (702)
T PRK14960 117 GRFKVYLIDEVHMLST------------------------------HSFNALLKTLEEPPE--------HVKFLFATTDP 158 (702)
T ss_pred CCcEEEEEechHhcCH------------------------------HHHHHHHHHHhcCCC--------CcEEEEEECCh
Confidence 2457999999999854 356778888876543 23466666
Q ss_pred CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 158 DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 158 ~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
..+++.+++ |+ ..++|.+++.++..+.+++
T Consensus 159 ~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~ 188 (702)
T PRK14960 159 QKLPITVIS--RC-LQFTLRPLAVDEITKHLGA 188 (702)
T ss_pred HhhhHHHHH--hh-heeeccCCCHHHHHHHHHH
Confidence 567788887 88 5699999999988777654
No 91
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.37 E-value=6.7e-12 Score=105.29 Aligned_cols=128 Identities=19% Similarity=0.160 Sum_probs=88.3
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHHHH------------HHhcCC---Ce---EEEEeCC
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRNV------------LIATEN---KS---ILAVEDI 91 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~~~------------~~~~~~---~~---Il~lDei 91 (192)
....++|.||||||||++++++|+.++.++..+.|+.....+++... +..... .. |+++|||
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEI 121 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEI 121 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecc
Confidence 34569999999999999999999999999999999876654433211 111111 13 9999999
Q ss_pred CccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCcccccccc---CCCcceEEEEe---------CC
Q 040463 92 DCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMR---GSQYSQLIIKT---------DL 159 (192)
Q Consensus 92 d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~---~~~~~~iiv~t---------~~ 159 (192)
+...+ .+.+.|+..|+...-..... ..+...++++| ..
T Consensus 122 nra~p------------------------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~ 171 (329)
T COG0714 122 NRAPP------------------------------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYP 171 (329)
T ss_pred ccCCH------------------------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcC
Confidence 99754 67788887776522111000 11234466666 46
Q ss_pred ccccccCCCcceeEEEecCC-CHHHHHHHHH
Q 040463 160 TLNLLLRPGCMDMHIHMSYC-TPCGLKMLAS 189 (192)
Q Consensus 160 l~~~l~~~~rf~~~i~~~~p-~~~~r~~i~~ 189 (192)
+++++++ ||...+++++| +.++...+..
T Consensus 172 l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~ 200 (329)
T COG0714 172 LPEALLD--RFLLRIYVDYPDSEEEERIILA 200 (329)
T ss_pred CCHHHHh--hEEEEEecCCCCchHHHHHHHH
Confidence 7999999 99999999999 5555544443
No 92
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.37 E-value=8e-12 Score=99.35 Aligned_cols=116 Identities=12% Similarity=0.069 Sum_probs=78.4
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCChhHHHHHHHhcCCCeEEEEeCCCccccccCccccccC
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDNTKLRNVLIATENKSILAVEDIDCSINLQGRHSQAKT 106 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~~~l~~~~~~~~~~~Il~lDeid~l~~~~~~~~~~~~ 106 (192)
....++|+||+|||||++++++++.. +.++..+++..+.. .+.......+++|||+|.+..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~liiDdi~~l~~---------- 104 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL------AFDFDPEAELYAVDDVERLDD---------- 104 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH------HHhhcccCCEEEEeChhhcCc----------
Confidence 34579999999999999999999976 56777777766432 122233568999999998743
Q ss_pred CCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe-------CCccccccCCCcc--eeEEEec
Q 040463 107 LNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-------DLTLNLLLRPGCM--DMHIHMS 177 (192)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-------~~l~~~l~~~~rf--~~~i~~~ 177 (192)
.....++..++...... ..+++++ ..+.+.+.+ || ...++++
T Consensus 105 --------------------~~~~~L~~~~~~~~~~~-------~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~ 155 (227)
T PRK08903 105 --------------------AQQIALFNLFNRVRAHG-------QGALLVAGPAAPLALPLREDLRT--RLGWGLVYELK 155 (227)
T ss_pred --------------------hHHHHHHHHHHHHHHcC-------CcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEec
Confidence 12344555555543321 1234444 234455665 76 4689999
Q ss_pred CCCHHHHHHHHHh
Q 040463 178 YCTPCGLKMLASN 190 (192)
Q Consensus 178 ~p~~~~r~~i~~~ 190 (192)
+|+.+++..+++.
T Consensus 156 pl~~~~~~~~l~~ 168 (227)
T PRK08903 156 PLSDADKIAALKA 168 (227)
T ss_pred CCCHHHHHHHHHH
Confidence 9999988888764
No 93
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.37 E-value=4.3e-12 Score=118.26 Aligned_cols=128 Identities=18% Similarity=0.189 Sum_probs=84.8
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEeecCCCCC--------hhHHHHHHHhc---CCCeEE
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYL----------NFDVCDLELTTLRD--------NTKLRNVLIAT---ENKSIL 86 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~----------~~~~~~i~~~~~~~--------~~~l~~~~~~~---~~~~Il 86 (192)
...+++++|+||||||||++++++|..+ +.+++.++...+.. ...+.+.+... ..++||
T Consensus 191 r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~IL 270 (852)
T TIGR03346 191 RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIIL 270 (852)
T ss_pred cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEE
Confidence 3445689999999999999999999986 56777777655431 23566666544 358999
Q ss_pred EEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe--------C
Q 040463 87 AVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT--------D 158 (192)
Q Consensus 87 ~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t--------~ 158 (192)
||||+|.+.+ ..... ...... +.+...... | .-++|.+| -
T Consensus 271 fIDEih~l~~--~g~~~--------------------~~~d~~----~~Lk~~l~~----g--~i~~IgaTt~~e~r~~~ 318 (852)
T TIGR03346 271 FIDELHTLVG--AGKAE--------------------GAMDAG----NMLKPALAR----G--ELHCIGATTLDEYRKYI 318 (852)
T ss_pred EeccHHHhhc--CCCCc--------------------chhHHH----HHhchhhhc----C--ceEEEEeCcHHHHHHHh
Confidence 9999999975 21111 001111 222222221 2 22333333 1
Q ss_pred CccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 159 LTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 159 ~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
.+|+++.| ||. .|.++.|+.+++.+|++.
T Consensus 319 ~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~ 347 (852)
T TIGR03346 319 EKDAALER--RFQ-PVFVDEPTVEDTISILRG 347 (852)
T ss_pred hcCHHHHh--cCC-EEEeCCCCHHHHHHHHHH
Confidence 36999999 995 589999999999999874
No 94
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=3.3e-12 Score=117.22 Aligned_cols=118 Identities=14% Similarity=0.218 Sum_probs=85.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEeecCCCCChhHHHHHHHhcC------
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFD------------------------VCDLELTTLRDNTKLRNVLIATE------ 81 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~------------------------~~~i~~~~~~~~~~l~~~~~~~~------ 81 (192)
..+||+||||||||++++.+|+.++.. ++.++..+..+...++++.....
T Consensus 39 HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~g 118 (944)
T PRK14949 39 HAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRG 118 (944)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcC
Confidence 357999999999999999999998653 12233322222344554443332
Q ss_pred CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---C
Q 040463 82 NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---D 158 (192)
Q Consensus 82 ~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~ 158 (192)
+..|+||||+|.+-. ..++.|+..|+....+ .++|++| .
T Consensus 119 k~KViIIDEAh~LT~------------------------------eAqNALLKtLEEPP~~--------vrFILaTTe~~ 160 (944)
T PRK14949 119 RFKVYLIDEVHMLSR------------------------------SSFNALLKTLEEPPEH--------VKFLLATTDPQ 160 (944)
T ss_pred CcEEEEEechHhcCH------------------------------HHHHHHHHHHhccCCC--------eEEEEECCCch
Confidence 457999999999854 5678899998876543 3566666 7
Q ss_pred CccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 159 LTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 159 ~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
.|.+.+++ |+ ..++|.+++.++..+.+++
T Consensus 161 kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~ 189 (944)
T PRK14949 161 KLPVTVLS--RC-LQFNLKSLTQDEIGTQLNH 189 (944)
T ss_pred hchHHHHH--hh-eEEeCCCCCHHHHHHHHHH
Confidence 78888888 88 6799999999998877765
No 95
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.37 E-value=5.2e-12 Score=116.03 Aligned_cols=126 Identities=17% Similarity=0.256 Sum_probs=89.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChh-------------------HHHHHHHhcCCCeEEEEeCCCc
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNT-------------------KLRNVLIATENKSILAVEDIDC 93 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~-------------------~l~~~~~~~~~~~Il~lDeid~ 93 (192)
.++|+||+|||||++|+++|+.++.+++.++++.+.... .+...+.. ...+|++|||+|.
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~-~p~~VvllDEiek 564 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRK-HPHCVLLLDEIEK 564 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHh-CCCeEEEEechhh
Confidence 488999999999999999999999999999887764321 12222222 2458999999999
Q ss_pred cccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccC--CC-cceEEEEe-----C-------
Q 040463 94 SINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRG--SQ-YSQLIIKT-----D------- 158 (192)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~--~~-~~~iiv~t-----~------- 158 (192)
+.+ ...+.|+..++...-.+ ..| .+ ...++|+| +
T Consensus 565 a~~------------------------------~~~~~Ll~~ld~g~~~d-~~g~~vd~~~~iii~Tsn~g~~~~~~~~~ 613 (731)
T TIGR02639 565 AHP------------------------------DIYNILLQVMDYATLTD-NNGRKADFRNVILIMTSNAGASEMSKPPI 613 (731)
T ss_pred cCH------------------------------HHHHHHHHhhccCeeec-CCCcccCCCCCEEEECCCcchhhhhhccC
Confidence 755 46677888777543211 001 01 23466666 1
Q ss_pred -----------------CccccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 159 -----------------LTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 159 -----------------~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
.+.|.++. |++..|.|.+++.++..+|++.+|
T Consensus 614 ~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L 662 (731)
T TIGR02639 614 GFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFV 662 (731)
T ss_pred CcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHH
Confidence 13455666 999999999999999999998653
No 96
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.37 E-value=1.7e-12 Score=112.87 Aligned_cols=123 Identities=15% Similarity=0.205 Sum_probs=84.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCCh-------hHHHHHHHhcCCCeEEEEeCCCccccccCcc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDN-------TKLRNVLIATENKSILAVEDIDCSINLQGRH 101 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~-------~~l~~~~~~~~~~~Il~lDeid~l~~~~~~~ 101 (192)
+.++||||+|+|||+|++++++++ +..+++++...+... ......-.......+|+|||++.+.+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~----- 216 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSG----- 216 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcC-----
Confidence 469999999999999999999976 577888877554310 01111111234678999999999754
Q ss_pred ccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe-------CCccccccCCCcce--e
Q 040463 102 SQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-------DLTLNLLLRPGCMD--M 172 (192)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-------~~l~~~l~~~~rf~--~ 172 (192)
......++...++.+... ...+|+.+ ..+++.+.+ ||. .
T Consensus 217 -----------------------k~~~qeelf~l~N~l~~~-------~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl 264 (445)
T PRK12422 217 -----------------------KGATQEEFFHTFNSLHTE-------GKLIVISSTCAPQDLKAMEERLIS--RFEWGI 264 (445)
T ss_pred -----------------------ChhhHHHHHHHHHHHHHC-------CCcEEEecCCCHHHHhhhHHHHHh--hhcCCe
Confidence 112345566665555432 12355555 357888888 884 7
Q ss_pred EEEecCCCHHHHHHHHHhc
Q 040463 173 HIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 173 ~i~~~~p~~~~r~~i~~~~ 191 (192)
.+.+.+|+.++|.+|+++.
T Consensus 265 ~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 265 AIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred EEecCCCCHHHHHHHHHHH
Confidence 8899999999999999764
No 97
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=6.6e-12 Score=110.47 Aligned_cols=120 Identities=14% Similarity=0.207 Sum_probs=86.5
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCC----------------------------cEEEeecCCCCChhHHHHHHHhcC-
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNF----------------------------DVCDLELTTLRDNTKLRNVLIATE- 81 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~----------------------------~~~~i~~~~~~~~~~l~~~~~~~~- 81 (192)
+..+||+||||||||++|+.+|+.++. .++.++..+-.+.++++..+..+.
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~ 122 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEY 122 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHh
Confidence 347999999999999999999998854 233344433334456666665553
Q ss_pred -----CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEE
Q 040463 82 -----NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIK 156 (192)
Q Consensus 82 -----~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~ 156 (192)
+..|++|||+|.+.. ..++.|+..++.... ...+|++
T Consensus 123 ~P~~~~~KVvIIDEa~~Ls~------------------------------~a~naLLk~LEepp~--------~~vfI~a 164 (507)
T PRK06645 123 KPLQGKHKIFIIDEVHMLSK------------------------------GAFNALLKTLEEPPP--------HIIFIFA 164 (507)
T ss_pred ccccCCcEEEEEEChhhcCH------------------------------HHHHHHHHHHhhcCC--------CEEEEEE
Confidence 467999999998743 346778777775433 2345555
Q ss_pred e---CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 157 T---DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 157 t---~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
| +.+++.+++ |+ ..++|..++.++...++++.
T Consensus 165 Tte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i 199 (507)
T PRK06645 165 TTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYI 199 (507)
T ss_pred eCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHH
Confidence 5 678888888 88 56999999999998887653
No 98
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.37 E-value=1.2e-11 Score=113.07 Aligned_cols=119 Identities=17% Similarity=0.236 Sum_probs=77.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh----------CCcEEEeecCCCCChh-----------------------HHHHHHHhc
Q 040463 34 YLLYSPPRTGKSSLTAAMANYL----------NFDVCDLELTTLRDNT-----------------------KLRNVLIAT 80 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~----------~~~~~~i~~~~~~~~~-----------------------~l~~~~~~~ 80 (192)
++++|+||||||++++.+.+.+ ...++.++|..+.... .+..+|...
T Consensus 784 LYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L 863 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQN 863 (1164)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhh
Confidence 5699999999999999998876 2567889986654321 122222222
Q ss_pred ----CCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEE
Q 040463 81 ----ENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIK 156 (192)
Q Consensus 81 ----~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~ 156 (192)
....||+|||||.|.. . . ...|+..++..... ..+|+|+
T Consensus 864 ~k~~r~v~IIILDEID~L~k--K-------------------------~---QDVLYnLFR~~~~s-------~SKLiLI 906 (1164)
T PTZ00112 864 KKDNRNVSILIIDEIDYLIT--K-------------------------T---QKVLFTLFDWPTKI-------NSKLVLI 906 (1164)
T ss_pred hcccccceEEEeehHhhhCc--c-------------------------H---HHHHHHHHHHhhcc-------CCeEEEE
Confidence 1246999999999975 1 1 12244344322211 2345555
Q ss_pred e--------CCccccccCCCccee-EEEecCCCHHHHHHHHHhc
Q 040463 157 T--------DLTLNLLLRPGCMDM-HIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 157 t--------~~l~~~l~~~~rf~~-~i~~~~p~~~~r~~i~~~~ 191 (192)
+ +.+++.+.+ ||.. .|.|++++.+++.+|++..
T Consensus 907 GISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~R 948 (1164)
T PTZ00112 907 AISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKER 948 (1164)
T ss_pred EecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHH
Confidence 5 456777777 6654 4899999999999999753
No 99
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=3.8e-12 Score=114.45 Aligned_cols=118 Identities=13% Similarity=0.233 Sum_probs=87.7
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCC------------------------cEEEeecCCCCChhHHHHHHHhcC------
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNF------------------------DVCDLELTTLRDNTKLRNVLIATE------ 81 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~------------------------~~~~i~~~~~~~~~~l~~~~~~~~------ 81 (192)
..+||+||+|+|||++++.+|+.++. +++.++..+-.+.++++++.....
T Consensus 39 hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g 118 (647)
T PRK07994 39 HAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARG 118 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcC
Confidence 35899999999999999999998865 234455443233455665554432
Q ss_pred CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---C
Q 040463 82 NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---D 158 (192)
Q Consensus 82 ~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~ 158 (192)
+.-|+||||+|.+.. ..++.|+..++.-..+ .++|++| .
T Consensus 119 ~~KV~IIDEah~Ls~------------------------------~a~NALLKtLEEPp~~--------v~FIL~Tt~~~ 160 (647)
T PRK07994 119 RFKVYLIDEVHMLSR------------------------------HSFNALLKTLEEPPEH--------VKFLLATTDPQ 160 (647)
T ss_pred CCEEEEEechHhCCH------------------------------HHHHHHHHHHHcCCCC--------eEEEEecCCcc
Confidence 457999999999854 5678899988876543 3456666 7
Q ss_pred CccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 159 LTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 159 ~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
.+.+.+++ |+ ..++|.+++.++..+.+++
T Consensus 161 kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~ 189 (647)
T PRK07994 161 KLPVTILS--RC-LQFHLKALDVEQIRQQLEH 189 (647)
T ss_pred ccchHHHh--hh-eEeeCCCCCHHHHHHHHHH
Confidence 88888998 87 7799999999988877754
No 100
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.36 E-value=1.7e-12 Score=115.54 Aligned_cols=122 Identities=14% Similarity=0.124 Sum_probs=87.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEeecCCCCCh-------hHHHHHHHhcCCCeEEEEeCCCccccccCc
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL-----NFDVCDLELTTLRDN-------TKLRNVLIATENKSILAVEDIDCSINLQGR 100 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~-----~~~~~~i~~~~~~~~-------~~l~~~~~~~~~~~Il~lDeid~l~~~~~~ 100 (192)
.++|||++|+|||+|++++++++ +..++++++..+... ..+..+........+|+|||++.+.+
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~g---- 391 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLED---- 391 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccC----
Confidence 49999999999999999999986 457788887665321 11112223334678999999999865
Q ss_pred cccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe-------CCccccccCCCcc--e
Q 040463 101 HSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-------DLTLNLLLRPGCM--D 171 (192)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-------~~l~~~l~~~~rf--~ 171 (192)
+......|+..++.+... ...||+.+ ..+++.|.+ || .
T Consensus 392 ------------------------ke~tqeeLF~l~N~l~e~-------gk~IIITSd~~P~eL~~l~~rL~S--Rf~~G 438 (617)
T PRK14086 392 ------------------------KESTQEEFFHTFNTLHNA-------NKQIVLSSDRPPKQLVTLEDRLRN--RFEWG 438 (617)
T ss_pred ------------------------CHHHHHHHHHHHHHHHhc-------CCCEEEecCCChHhhhhccHHHHh--hhhcC
Confidence 112345666777766543 22466655 357889999 77 6
Q ss_pred eEEEecCCCHHHHHHHHHhc
Q 040463 172 MHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 172 ~~i~~~~p~~~~r~~i~~~~ 191 (192)
..+.+..|+.+.|.+|++..
T Consensus 439 Lvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 439 LITDVQPPELETRIAILRKK 458 (617)
T ss_pred ceEEcCCCCHHHHHHHHHHH
Confidence 66799999999999999764
No 101
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.36 E-value=3.9e-12 Score=106.09 Aligned_cols=113 Identities=18% Similarity=0.215 Sum_probs=78.0
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCc---EEEeecCCCCChhHHHHHHHhcC-------CCeEEEEeCCCccccccCcc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFD---VCDLELTTLRDNTKLRNVLIATE-------NKSILAVEDIDCSINLQGRH 101 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~---~~~i~~~~~~~~~~l~~~~~~~~-------~~~Il~lDeid~l~~~~~~~ 101 (192)
.+++||||||||||++|+.++.-..-+ |+.+++..- ....++.+|..+. +.+|||||||+.+-.
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a-~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk----- 236 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA-KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK----- 236 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc-chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh-----
Confidence 369999999999999999999987655 677776653 3456777777663 689999999999854
Q ss_pred ccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe-------CCccccccCCCcceeEE
Q 040463 102 SQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-------DLTLNLLLRPGCMDMHI 174 (192)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-------~~l~~~l~~~~rf~~~i 174 (192)
.....++.... ...|++|+ -.+..+|++ |+ .++
T Consensus 237 ----------------------------sQQD~fLP~VE---------~G~I~lIGATTENPSFqln~aLlS--RC-~Vf 276 (554)
T KOG2028|consen 237 ----------------------------SQQDTFLPHVE---------NGDITLIGATTENPSFQLNAALLS--RC-RVF 276 (554)
T ss_pred ----------------------------hhhhcccceec---------cCceEEEecccCCCccchhHHHHh--cc-cee
Confidence 11111233332 22366666 467778888 77 456
Q ss_pred EecCCCHHHHHHHHHh
Q 040463 175 HMSYCTPCGLKMLASN 190 (192)
Q Consensus 175 ~~~~p~~~~r~~i~~~ 190 (192)
.+...+.+....|+.+
T Consensus 277 vLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 277 VLEKLPVNAVVTILMR 292 (554)
T ss_pred EeccCCHHHHHHHHHH
Confidence 6777777776666644
No 102
>PRK05642 DNA replication initiation factor; Validated
Probab=99.36 E-value=4.2e-12 Score=101.76 Aligned_cols=120 Identities=15% Similarity=0.118 Sum_probs=82.8
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCChhHHHHHHHhcCCCeEEEEeCCCccccccCccccccCCC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDNTKLRNVLIATENKSILAVEDIDCSINLQGRHSQAKTLN 108 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~~~l~~~~~~~~~~~Il~lDeid~l~~~~~~~~~~~~~~ 108 (192)
..++||||+|+|||+|++++++++ +..+++++...+... ............+|+|||++.+.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--~~~~~~~~~~~d~LiiDDi~~~~~------------ 111 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--GPELLDNLEQYELVCLDDLDVIAG------------ 111 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--hHHHHHhhhhCCEEEEechhhhcC------------
Confidence 468999999999999999999865 566777777665432 122333333456899999998754
Q ss_pred CCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe-------CCccccccCCCcc--eeEEEecCC
Q 040463 109 PVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-------DLTLNLLLRPGCM--DMHIHMSYC 179 (192)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-------~~l~~~l~~~~rf--~~~i~~~~p 179 (192)
.......|+..++.+.++. .++++.+ ....+.+.+ || ...+.+.+|
T Consensus 112 ----------------~~~~~~~Lf~l~n~~~~~g-------~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~ 166 (234)
T PRK05642 112 ----------------KADWEEALFHLFNRLRDSG-------RRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGL 166 (234)
T ss_pred ----------------ChHHHHHHHHHHHHHHhcC-------CEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCC
Confidence 1123356777777665432 2344444 334688888 87 466788999
Q ss_pred CHHHHHHHHHh
Q 040463 180 TPCGLKMLASN 190 (192)
Q Consensus 180 ~~~~r~~i~~~ 190 (192)
+.+++.++++.
T Consensus 167 ~~e~~~~il~~ 177 (234)
T PRK05642 167 SDEDKLRALQL 177 (234)
T ss_pred CHHHHHHHHHH
Confidence 99999999873
No 103
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=3.9e-12 Score=112.25 Aligned_cols=119 Identities=13% Similarity=0.259 Sum_probs=87.1
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEeecCCCCChhHHHHHHHhcC-----
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFD------------------------VCDLELTTLRDNTKLRNVLIATE----- 81 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~------------------------~~~i~~~~~~~~~~l~~~~~~~~----- 81 (192)
+..+||+||+|+|||++|+.+|+.++.. ++.++.++-.+-+++++++....
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~ 117 (509)
T PRK14958 38 HHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTK 117 (509)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhcccc
Confidence 3468999999999999999999988542 55666555445566766665442
Q ss_pred -CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---
Q 040463 82 -NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT--- 157 (192)
Q Consensus 82 -~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t--- 157 (192)
+..|++|||+|.+.. ...+.|+..++....+ ..+|++|
T Consensus 118 ~~~kV~iIDE~~~ls~------------------------------~a~naLLk~LEepp~~--------~~fIlattd~ 159 (509)
T PRK14958 118 GRFKVYLIDEVHMLSG------------------------------HSFNALLKTLEEPPSH--------VKFILATTDH 159 (509)
T ss_pred CCcEEEEEEChHhcCH------------------------------HHHHHHHHHHhccCCC--------eEEEEEECCh
Confidence 457999999999854 4568888888876543 3466666
Q ss_pred CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 158 DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 158 ~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
..+.+.+++ |+ ..++|.+++.++....+++
T Consensus 160 ~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~ 189 (509)
T PRK14958 160 HKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQH 189 (509)
T ss_pred HhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHH
Confidence 677777888 77 5689999998887665443
No 104
>PHA02244 ATPase-like protein
Probab=99.36 E-value=1.7e-11 Score=103.29 Aligned_cols=63 Identities=21% Similarity=0.303 Sum_probs=47.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHH------------HHHHHhcCCCeEEEEeCCCcccc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKL------------RNVLIATENKSILAVEDIDCSIN 96 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l------------~~~~~~~~~~~Il~lDeid~l~~ 96 (192)
..++|+||||||||++|+++|+.++.+++.++... ....+ -..+....++.+++|||++.+.+
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~--d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId~a~p 194 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIM--DEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEIDASIP 194 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecCh--HHHhhcccccccccccchHHHHHhhcCCEEEEeCcCcCCH
Confidence 46999999999999999999999999999887421 11111 12233345789999999999754
No 105
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.35 E-value=4.9e-12 Score=117.48 Aligned_cols=129 Identities=19% Similarity=0.180 Sum_probs=86.6
Q ss_pred cCCCCccEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEeecCCCCC--------hhHHHHHHHhcC--CCeEE
Q 040463 27 GRAWKRGYLLYSPPRTGKSSLTAAMANYL----------NFDVCDLELTTLRD--------NTKLRNVLIATE--NKSIL 86 (192)
Q Consensus 27 ~~~~~~~ilL~GppGtGKt~l~~~ia~~~----------~~~~~~i~~~~~~~--------~~~l~~~~~~~~--~~~Il 86 (192)
....+++++|+||||||||++|+++|... +.+++.++.+.+.. +..+..++..+. .++||
T Consensus 196 ~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~IL 275 (821)
T CHL00095 196 GRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIIL 275 (821)
T ss_pred cccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEE
Confidence 34456689999999999999999999986 36788888765531 336667776543 58999
Q ss_pred EEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe--------C
Q 040463 87 AVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT--------D 158 (192)
Q Consensus 87 ~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t--------~ 158 (192)
||||+|.+.+ ..... ......+-|...+. . | .-++|.+| .
T Consensus 276 fiDEih~l~~--~g~~~--------------------g~~~~a~lLkp~l~---r-----g--~l~~IgaTt~~ey~~~i 323 (821)
T CHL00095 276 VIDEVHTLIG--AGAAE--------------------GAIDAANILKPALA---R-----G--ELQCIGATTLDEYRKHI 323 (821)
T ss_pred EEecHHHHhc--CCCCC--------------------CcccHHHHhHHHHh---C-----C--CcEEEEeCCHHHHHHHH
Confidence 9999999976 21111 00112222222221 1 1 33455555 1
Q ss_pred CccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 159 LTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 159 ~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
..++++.+ ||. .|.++.|+.++...|++.
T Consensus 324 e~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 324 EKDPALER--RFQ-PVYVGEPSVEETIEILFG 352 (821)
T ss_pred hcCHHHHh--cce-EEecCCCCHHHHHHHHHH
Confidence 36889999 995 589999999999888763
No 106
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=2.2e-11 Score=107.37 Aligned_cols=118 Identities=14% Similarity=0.218 Sum_probs=82.0
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCC-----------------------cEEEeecCCCCChhHHHHHHHhc------CC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNF-----------------------DVCDLELTTLRDNTKLRNVLIAT------EN 82 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~-----------------------~~~~i~~~~~~~~~~l~~~~~~~------~~ 82 (192)
..+|||||||||||++++++|+.+.. .++.++.....+...+++..... .+
T Consensus 37 ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~ 116 (504)
T PRK14963 37 HAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGG 116 (504)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCC
Confidence 35799999999999999999998843 24555554333334444443322 25
Q ss_pred CeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---CC
Q 040463 83 KSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DL 159 (192)
Q Consensus 83 ~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~~ 159 (192)
+.|++|||+|.+.. ..++.|+..++....+ ..+|+++ ..
T Consensus 117 ~kVVIIDEad~ls~------------------------------~a~naLLk~LEep~~~--------t~~Il~t~~~~k 158 (504)
T PRK14963 117 RKVYILDEAHMMSK------------------------------SAFNALLKTLEEPPEH--------VIFILATTEPEK 158 (504)
T ss_pred CeEEEEECccccCH------------------------------HHHHHHHHHHHhCCCC--------EEEEEEcCChhh
Confidence 67999999997633 3567787777665332 2344555 67
Q ss_pred ccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 160 TLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 160 l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
+.+.+.+ |+. .++|.+|+.++..+.+++
T Consensus 159 l~~~I~S--Rc~-~~~f~~ls~~el~~~L~~ 186 (504)
T PRK14963 159 MPPTILS--RTQ-HFRFRRLTEEEIAGKLRR 186 (504)
T ss_pred CChHHhc--ceE-EEEecCCCHHHHHHHHHH
Confidence 7888887 774 699999999998877765
No 107
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.34 E-value=8.8e-12 Score=113.77 Aligned_cols=114 Identities=17% Similarity=0.213 Sum_probs=81.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHHHHHHh-------cCCCeEEEEeCCCccccccCccccc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRNVLIA-------TENKSILAVEDIDCSINLQGRHSQA 104 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~~~~~~-------~~~~~Il~lDeid~l~~~~~~~~~~ 104 (192)
.+++||||||||||++++++++..+.+++.+++.... ...++..+.. ..+..+|||||+|.+..
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~-i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~-------- 123 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG-VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK-------- 123 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh-hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH--------
Confidence 3699999999999999999999999998888876422 2223322222 23568999999999743
Q ss_pred cCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe-------CCccccccCCCcceeEEEec
Q 040463 105 KTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-------DLTLNLLLRPGCMDMHIHMS 177 (192)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-------~~l~~~l~~~~rf~~~i~~~ 177 (192)
.....|+..++.. .+++++ ..+++++++ |+ ..+.|+
T Consensus 124 ----------------------~qQdaLL~~lE~g------------~IiLI~aTTenp~~~l~~aL~S--R~-~v~~l~ 166 (725)
T PRK13341 124 ----------------------AQQDALLPWVENG------------TITLIGATTENPYFEVNKALVS--RS-RLFRLK 166 (725)
T ss_pred ----------------------HHHHHHHHHhcCc------------eEEEEEecCCChHhhhhhHhhc--cc-cceecC
Confidence 2234555544332 244443 357788888 65 468999
Q ss_pred CCCHHHHHHHHHhc
Q 040463 178 YCTPCGLKMLASNY 191 (192)
Q Consensus 178 ~p~~~~r~~i~~~~ 191 (192)
+++.+++..+++++
T Consensus 167 pLs~edi~~IL~~~ 180 (725)
T PRK13341 167 SLSDEDLHQLLKRA 180 (725)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999998764
No 108
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=8e-12 Score=109.33 Aligned_cols=119 Identities=12% Similarity=0.171 Sum_probs=90.8
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh------------------------CCcEEEeecCCCCChhHHHHHHHhcC-----
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL------------------------NFDVCDLELTTLRDNTKLRNVLIATE----- 81 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~------------------------~~~~~~i~~~~~~~~~~l~~~~~~~~----- 81 (192)
+..+||+||+|+||||+|+.+|+.+ +..++.++.++..+.++++.++..+.
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~ 114 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPIS 114 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhcccc
Confidence 3479999999999999999999865 23567777766566667777766552
Q ss_pred -CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---
Q 040463 82 -NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT--- 157 (192)
Q Consensus 82 -~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t--- 157 (192)
+.-|++|||+|.+.. ..++.|+..++.-... ..+|++|
T Consensus 115 ~~~KVvIIDEah~Ls~------------------------------~A~NaLLK~LEePp~~--------v~fIlatte~ 156 (491)
T PRK14964 115 SKFKVYIIDEVHMLSN------------------------------SAFNALLKTLEEPAPH--------VKFILATTEV 156 (491)
T ss_pred CCceEEEEeChHhCCH------------------------------HHHHHHHHHHhCCCCC--------eEEEEEeCCh
Confidence 467999999998754 4578888888876543 3455566
Q ss_pred CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 158 DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 158 ~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
..+.+.+++ |+ ..++|.+++.++..+.+++
T Consensus 157 ~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ 186 (491)
T PRK14964 157 KKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVD 186 (491)
T ss_pred HHHHHHHHH--hh-eeeecccccHHHHHHHHHH
Confidence 678888888 88 5699999999988877664
No 109
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.34 E-value=2e-12 Score=112.43 Aligned_cols=123 Identities=15% Similarity=0.208 Sum_probs=82.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEeecCCCCCh-------hHHHHHHHhcC-CCeEEEEeCCCcccccc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL-----NFDVCDLELTTLRDN-------TKLRNVLIATE-NKSILAVEDIDCSINLQ 98 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~-----~~~~~~i~~~~~~~~-------~~l~~~~~~~~-~~~Il~lDeid~l~~~~ 98 (192)
+.++||||+|+|||+|++++++++ +..++++++..+... ..+........ .+.+|+|||++.+.+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~-- 208 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIG-- 208 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcC--
Confidence 359999999999999999999986 456777777654321 01111111222 578999999999865
Q ss_pred CccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe-------CCccccccCCCcc-
Q 040463 99 GRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-------DLTLNLLLRPGCM- 170 (192)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-------~~l~~~l~~~~rf- 170 (192)
. .....+++..++.+.... ..+++++ ..+.+.+.+ ||
T Consensus 209 ~--------------------------~~~q~elf~~~n~l~~~~-------k~iIitsd~~p~~l~~l~~rL~S--R~~ 253 (440)
T PRK14088 209 K--------------------------TGVQTELFHTFNELHDSG-------KQIVICSDREPQKLSEFQDRLVS--RFQ 253 (440)
T ss_pred c--------------------------HHHHHHHHHHHHHHHHcC-------CeEEEECCCCHHHHHHHHHHHhh--HHh
Confidence 1 123345666666655432 2355555 356677777 77
Q ss_pred -eeEEEecCCCHHHHHHHHHhc
Q 040463 171 -DMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 171 -~~~i~~~~p~~~~r~~i~~~~ 191 (192)
+..+.+.+|+.++|.+|++..
T Consensus 254 ~gl~v~i~~pd~e~r~~IL~~~ 275 (440)
T PRK14088 254 MGLVAKLEPPDEETRKKIARKM 275 (440)
T ss_pred cCceEeeCCCCHHHHHHHHHHH
Confidence 456799999999999999764
No 110
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.33 E-value=3.9e-12 Score=110.82 Aligned_cols=123 Identities=13% Similarity=0.181 Sum_probs=87.1
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEeecCCCCCh---------hHHHHHHHhcCCCeEEEEeCCCccccc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL-----NFDVCDLELTTLRDN---------TKLRNVLIATENKSILAVEDIDCSINL 97 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~-----~~~~~~i~~~~~~~~---------~~l~~~~~~~~~~~Il~lDeid~l~~~ 97 (192)
+.++|||++|+|||+|++++++++ +..++++++..+... ..+...........+|+|||++.+.+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~- 220 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSY- 220 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccC-
Confidence 469999999999999999999965 466778877665421 12222333345678999999998854
Q ss_pred cCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe-------CCccccccCCCcc
Q 040463 98 QGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-------DLTLNLLLRPGCM 170 (192)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-------~~l~~~l~~~~rf 170 (192)
+......|...++...... ..+|+.+ ..+++.+.+ ||
T Consensus 221 ---------------------------k~~~~e~lf~l~N~~~~~~-------k~iIltsd~~P~~l~~l~~rL~S--R~ 264 (450)
T PRK14087 221 ---------------------------KEKTNEIFFTIFNNFIEND-------KQLFFSSDKSPELLNGFDNRLIT--RF 264 (450)
T ss_pred ---------------------------CHHHHHHHHHHHHHHHHcC-------CcEEEECCCCHHHHhhccHHHHH--HH
Confidence 1234566777777665432 2455554 456788888 77
Q ss_pred --eeEEEecCCCHHHHHHHHHhc
Q 040463 171 --DMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 171 --~~~i~~~~p~~~~r~~i~~~~ 191 (192)
+..+.+.+|+.++|.+|+++.
T Consensus 265 ~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 265 NMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred hCCceeccCCcCHHHHHHHHHHH
Confidence 466799999999999999764
No 111
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=1.1e-11 Score=114.38 Aligned_cols=119 Identities=17% Similarity=0.262 Sum_probs=85.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCC--------------------------cEEEeecCCCCChhHHHHHHHhc-----
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNF--------------------------DVCDLELTTLRDNTKLRNVLIAT----- 80 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~--------------------------~~~~i~~~~~~~~~~l~~~~~~~----- 80 (192)
..+||+||+|||||++++.+|+.+.+ .++.++.....+.++++++....
T Consensus 38 Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~ 117 (824)
T PRK07764 38 HAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPA 117 (824)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchh
Confidence 36899999999999999999999853 23444443333344555443322
Q ss_pred -CCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe--
Q 040463 81 -ENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-- 157 (192)
Q Consensus 81 -~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-- 157 (192)
.+.-|+||||+|.+-. ...+.|+..|+....+. .+|++|
T Consensus 118 ~~~~KV~IIDEad~lt~------------------------------~a~NaLLK~LEEpP~~~--------~fIl~tt~ 159 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTP------------------------------QGFNALLKIVEEPPEHL--------KFIFATTE 159 (824)
T ss_pred cCCceEEEEechhhcCH------------------------------HHHHHHHHHHhCCCCCe--------EEEEEeCC
Confidence 2567999999999854 45688998888876533 455555
Q ss_pred -CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 158 -DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 158 -~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
+.|.+.|++ |+ .+++|..++.++..+++++.
T Consensus 160 ~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~i 191 (824)
T PRK07764 160 PDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERI 191 (824)
T ss_pred hhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHH
Confidence 567778887 77 67899999999988777653
No 112
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.33 E-value=3e-11 Score=101.84 Aligned_cols=120 Identities=16% Similarity=0.238 Sum_probs=82.1
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCC------------------------cEEEeecCCCCChhHHHHHHHhcC-----
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNF------------------------DVCDLELTTLRDNTKLRNVLIATE----- 81 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~------------------------~~~~i~~~~~~~~~~l~~~~~~~~----- 81 (192)
+..+|||||||+|||++++++++.+.. .++.++.....+...+++++..+.
T Consensus 36 ~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~ 115 (355)
T TIGR02397 36 AHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSS 115 (355)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCccc
Confidence 346899999999999999999998742 244444443233344555555443
Q ss_pred -CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---
Q 040463 82 -NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT--- 157 (192)
Q Consensus 82 -~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t--- 157 (192)
..-|+++||+|.+.. ...+.++..++....+ ..+|+++
T Consensus 116 ~~~~vviidea~~l~~------------------------------~~~~~Ll~~le~~~~~--------~~lIl~~~~~ 157 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSK------------------------------SAFNALLKTLEEPPEH--------VVFILATTEP 157 (355)
T ss_pred CCceEEEEeChhhcCH------------------------------HHHHHHHHHHhCCccc--------eeEEEEeCCH
Confidence 346999999998743 3456777777664332 2344555
Q ss_pred CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 158 DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 158 ~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
+.+.+.+.+ |+ ..++|++|+.++..+++..+
T Consensus 158 ~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~ 188 (355)
T TIGR02397 158 HKIPATILS--RC-QRFDFKRIPLEDIVERLKKI 188 (355)
T ss_pred HHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHH
Confidence 556677887 77 56899999999998887653
No 113
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=4e-11 Score=107.01 Aligned_cols=119 Identities=14% Similarity=0.215 Sum_probs=86.6
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhC------------------------CcEEEeecCCCCChhHHHHHHHhcC-----
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLN------------------------FDVCDLELTTLRDNTKLRNVLIATE----- 81 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~------------------------~~~~~i~~~~~~~~~~l~~~~~~~~----- 81 (192)
+..+||+||+|||||++|+.+|+.+. .+++.++..+..+.+.+++....+.
T Consensus 38 ~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~ 117 (559)
T PRK05563 38 SHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSE 117 (559)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCccc
Confidence 34689999999999999999999874 3455666554444556666655543
Q ss_pred -CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---
Q 040463 82 -NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT--- 157 (192)
Q Consensus 82 -~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t--- 157 (192)
+.-|++|||+|.+.. ..++.|+..++....+ ..+|++|
T Consensus 118 ~~~kViIIDE~~~Lt~------------------------------~a~naLLKtLEepp~~--------~ifIlatt~~ 159 (559)
T PRK05563 118 AKYKVYIIDEVHMLST------------------------------GAFNALLKTLEEPPAH--------VIFILATTEP 159 (559)
T ss_pred CCeEEEEEECcccCCH------------------------------HHHHHHHHHhcCCCCC--------eEEEEEeCCh
Confidence 457999999999843 3567888888765432 2344444
Q ss_pred CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 158 DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 158 ~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
..+++.+++ |+. .+.|++|+.++..+.+++
T Consensus 160 ~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~ 189 (559)
T PRK05563 160 HKIPATILS--RCQ-RFDFKRISVEDIVERLKY 189 (559)
T ss_pred hhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHH
Confidence 778888888 884 589999999988777754
No 114
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.32 E-value=2.4e-11 Score=101.54 Aligned_cols=118 Identities=15% Similarity=0.210 Sum_probs=77.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEeecCCCCC--------------------------hhHHHHHHHhc-
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLN-----FDVCDLELTTLRD--------------------------NTKLRNVLIAT- 80 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~-----~~~~~i~~~~~~~--------------------------~~~l~~~~~~~- 80 (192)
.++|+||||||||++++++++.+. .+++.+++..+.. ...++..+...
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYA 117 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHH
Confidence 699999999999999999999874 3456666654311 01122222111
Q ss_pred ------CCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 81 ------ENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 81 ------~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
..+.+|+|||+|.+.. .....|...++.... ..++|
T Consensus 118 ~~~~~~~~~~vlilDe~~~l~~------------------------------~~~~~L~~~le~~~~--------~~~~I 159 (337)
T PRK12402 118 SYRPLSADYKTILLDNAEALRE------------------------------DAQQALRRIMEQYSR--------TCRFI 159 (337)
T ss_pred hcCCCCCCCcEEEEeCcccCCH------------------------------HHHHHHHHHHHhccC--------CCeEE
Confidence 2356999999998743 223445555555433 22466
Q ss_pred EEe---CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 155 IKT---DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 155 v~t---~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
+++ ..+.+.+.+ |+ ..+.+.+|+.++...+++..
T Consensus 160 l~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~ 196 (337)
T PRK12402 160 IATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESI 196 (337)
T ss_pred EEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHH
Confidence 655 456667776 76 56899999999998887653
No 115
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=1.8e-11 Score=108.44 Aligned_cols=118 Identities=14% Similarity=0.256 Sum_probs=83.7
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCC------------------------cEEEeecCCCCChhHHHHHHHhcC------
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNF------------------------DVCDLELTTLRDNTKLRNVLIATE------ 81 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~------------------------~~~~i~~~~~~~~~~l~~~~~~~~------ 81 (192)
..+||+||+|+|||++|+.+|+.+.. .++.++...-.+.++++.++....
T Consensus 39 ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g 118 (546)
T PRK14957 39 HAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQG 118 (546)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcC
Confidence 36899999999999999999998753 344444433233344444444332
Q ss_pred CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---C
Q 040463 82 NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---D 158 (192)
Q Consensus 82 ~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~ 158 (192)
+.-|++|||+|.+.. ...+.|+..++..... ..+|++| .
T Consensus 119 ~~kViIIDEa~~ls~------------------------------~a~naLLK~LEepp~~--------v~fIL~Ttd~~ 160 (546)
T PRK14957 119 RYKVYLIDEVHMLSK------------------------------QSFNALLKTLEEPPEY--------VKFILATTDYH 160 (546)
T ss_pred CcEEEEEechhhccH------------------------------HHHHHHHHHHhcCCCC--------ceEEEEECChh
Confidence 467999999999743 4567888888876432 3456666 5
Q ss_pred CccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 159 LTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 159 ~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
.+.+.+++ |+ ..++|.+++.++..+.+++
T Consensus 161 kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~ 189 (546)
T PRK14957 161 KIPVTILS--RC-IQLHLKHISQADIKDQLKI 189 (546)
T ss_pred hhhhhHHH--he-eeEEeCCCCHHHHHHHHHH
Confidence 67777887 88 7799999999988766654
No 116
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.30 E-value=4.2e-11 Score=92.58 Aligned_cols=119 Identities=17% Similarity=0.179 Sum_probs=82.9
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEeecCC-CCChhHHHHHHHhcC----
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFD------------------------VCDLELTT-LRDNTKLRNVLIATE---- 81 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~------------------------~~~i~~~~-~~~~~~l~~~~~~~~---- 81 (192)
+..+|||||+|+|||++++.+++.+... +..+.... -.+.+.+++++....
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 93 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQ 93 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCcc
Confidence 4579999999999999999999987431 22222211 122345555454442
Q ss_pred --CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe--
Q 040463 82 --NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-- 157 (192)
Q Consensus 82 --~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-- 157 (192)
..-|++|||+|.+.. ...+.|+..++.... ...+|+++
T Consensus 94 ~~~~kviiide~~~l~~------------------------------~~~~~Ll~~le~~~~--------~~~~il~~~~ 135 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNE------------------------------AAANALLKTLEEPPP--------NTLFILITPS 135 (188)
T ss_pred cCCeEEEEEechhhhCH------------------------------HHHHHHHHHhcCCCC--------CeEEEEEECC
Confidence 457999999999854 345778888876443 22355555
Q ss_pred -CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 158 -DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 158 -~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
..+.+++++ |+ ..+.+++|+.++..++++.
T Consensus 136 ~~~l~~~i~s--r~-~~~~~~~~~~~~~~~~l~~ 166 (188)
T TIGR00678 136 PEKLLPTIRS--RC-QVLPFPPLSEEALLQWLIR 166 (188)
T ss_pred hHhChHHHHh--hc-EEeeCCCCCHHHHHHHHHH
Confidence 688888888 77 4799999999999888764
No 117
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.30 E-value=3.2e-12 Score=93.98 Aligned_cols=63 Identities=24% Similarity=0.338 Sum_probs=49.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHHHHHHh---c------------CCCeEEEEeCCCccc
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRNVLIA---T------------ENKSILAVEDIDCSI 95 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~~~~~~---~------------~~~~Il~lDeid~l~ 95 (192)
+|+|+||||||||++++.+|+.++.++..+.++...+..++.....- . .++++++|||++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCC
Confidence 48999999999999999999999999999999998776655432221 0 158999999999864
No 118
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=2.4e-11 Score=108.54 Aligned_cols=118 Identities=19% Similarity=0.276 Sum_probs=84.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCC--------------------------cEEEeecCCCCChhHHHHHHHhc-----
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNF--------------------------DVCDLELTTLRDNTKLRNVLIAT----- 80 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~--------------------------~~~~i~~~~~~~~~~l~~~~~~~----- 80 (192)
..+||+||+|||||++++.+|+.+.. .++.++..+..+-+.++++....
T Consensus 36 ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~ 115 (584)
T PRK14952 36 HAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPA 115 (584)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhh
Confidence 35899999999999999999998752 24445544433444554443322
Q ss_pred -CCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe--
Q 040463 81 -ENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-- 157 (192)
Q Consensus 81 -~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-- 157 (192)
.+.-|++|||+|.+-. ..++.|+..|+....+ ..+|++|
T Consensus 116 ~~~~KVvIIDEah~Lt~------------------------------~A~NALLK~LEEpp~~--------~~fIL~tte 157 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTT------------------------------AGFNALLKIVEEPPEH--------LIFIFATTE 157 (584)
T ss_pred cCCceEEEEECCCcCCH------------------------------HHHHHHHHHHhcCCCC--------eEEEEEeCC
Confidence 2457999999999854 3678888888876543 2455555
Q ss_pred -CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 158 -DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 158 -~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
+.+.+.+++ |+ ..++|..++.++..+.+++
T Consensus 158 ~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~ 188 (584)
T PRK14952 158 PEKVLPTIRS--RT-HHYPFRLLPPRTMRALIAR 188 (584)
T ss_pred hHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHH
Confidence 778888888 76 6799999999988777654
No 119
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=1.8e-11 Score=109.82 Aligned_cols=118 Identities=14% Similarity=0.253 Sum_probs=85.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCC-----------------------------cEEEeecCCCCChhHHHHHHHhcC-
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNF-----------------------------DVCDLELTTLRDNTKLRNVLIATE- 81 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~-----------------------------~~~~i~~~~~~~~~~l~~~~~~~~- 81 (192)
..+||+||+|+|||++++.+|+.++. .++.++..+-.+-+++++.+....
T Consensus 39 ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~ 118 (618)
T PRK14951 39 HAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVY 118 (618)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHh
Confidence 46899999999999999999998854 244444443334456666666542
Q ss_pred -----CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEE
Q 040463 82 -----NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIK 156 (192)
Q Consensus 82 -----~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~ 156 (192)
+.-|++|||+|.+.. ..++.|+..++.-... ..+|++
T Consensus 119 ~p~~g~~KV~IIDEvh~Ls~------------------------------~a~NaLLKtLEEPP~~--------~~fIL~ 160 (618)
T PRK14951 119 KPVQGRFKVFMIDEVHMLTN------------------------------TAFNAMLKTLEEPPEY--------LKFVLA 160 (618)
T ss_pred CcccCCceEEEEEChhhCCH------------------------------HHHHHHHHhcccCCCC--------eEEEEE
Confidence 356999999999854 4567888888775432 245666
Q ss_pred e---CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 157 T---DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 157 t---~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
| ..+.+.+++ |+ ..++|..++.++..+.+++
T Consensus 161 Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~ 194 (618)
T PRK14951 161 TTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQ 194 (618)
T ss_pred ECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHH
Confidence 5 667777888 87 6799999999988777654
No 120
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=1.4e-11 Score=110.94 Aligned_cols=120 Identities=13% Similarity=0.226 Sum_probs=86.0
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEeecCCCCChhHHHHHHHhc------
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFD------------------------VCDLELTTLRDNTKLRNVLIAT------ 80 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~------------------------~~~i~~~~~~~~~~l~~~~~~~------ 80 (192)
+.++||+||+|+|||++++.+|+.++.. ++.++..+-.+.+.++.++...
T Consensus 38 ~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~ 117 (709)
T PRK08691 38 HHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTA 117 (709)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhh
Confidence 4579999999999999999999987432 3444444434445666666543
Q ss_pred CCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---
Q 040463 81 ENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT--- 157 (192)
Q Consensus 81 ~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t--- 157 (192)
.+..|+||||+|.+.. ..++.|+..++.... ...+|++|
T Consensus 118 gk~KVIIIDEad~Ls~------------------------------~A~NALLKtLEEPp~--------~v~fILaTtd~ 159 (709)
T PRK08691 118 GKYKVYIIDEVHMLSK------------------------------SAFNAMLKTLEEPPE--------HVKFILATTDP 159 (709)
T ss_pred CCcEEEEEECccccCH------------------------------HHHHHHHHHHHhCCC--------CcEEEEEeCCc
Confidence 2457999999998743 356778888876543 23466666
Q ss_pred CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 158 DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 158 ~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
..+.+.+++ |+ ..+.|+.++.++....+++.
T Consensus 160 ~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~I 190 (709)
T PRK08691 160 HKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHV 190 (709)
T ss_pred cccchHHHH--HH-hhhhcCCCCHHHHHHHHHHH
Confidence 677888887 88 56899999999988777643
No 121
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=1.4e-11 Score=109.18 Aligned_cols=118 Identities=14% Similarity=0.244 Sum_probs=83.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCC------------------------cEEEeecCCCCChhHHHHHHHhcC------
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNF------------------------DVCDLELTTLRDNTKLRNVLIATE------ 81 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~------------------------~~~~i~~~~~~~~~~l~~~~~~~~------ 81 (192)
..+||+||+|+|||++|+.+|+.+.. .++.++...-.+.+.+++++..+.
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~ 118 (527)
T PRK14969 39 HAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRG 118 (527)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccC
Confidence 46899999999999999999998854 233444433333455666555442
Q ss_pred CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---C
Q 040463 82 NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---D 158 (192)
Q Consensus 82 ~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~ 158 (192)
+..|++|||+|.+.. ...+.|+..++....+ ..+|++| .
T Consensus 119 ~~kVvIIDEad~ls~------------------------------~a~naLLK~LEepp~~--------~~fIL~t~d~~ 160 (527)
T PRK14969 119 RFKVYIIDEVHMLSK------------------------------SAFNAMLKTLEEPPEH--------VKFILATTDPQ 160 (527)
T ss_pred CceEEEEcCcccCCH------------------------------HHHHHHHHHHhCCCCC--------EEEEEEeCChh
Confidence 457999999999753 3567888888776432 3456666 5
Q ss_pred CccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 159 LTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 159 ~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
.+.+.+++ |+ ..++|..++.++..+.+.+
T Consensus 161 kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~ 189 (527)
T PRK14969 161 KIPVTVLS--RC-LQFNLKQMPPPLIVSHLQH 189 (527)
T ss_pred hCchhHHH--HH-HHHhcCCCCHHHHHHHHHH
Confidence 67777777 77 6799999999987765543
No 122
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.6e-11 Score=111.54 Aligned_cols=127 Identities=17% Similarity=0.221 Sum_probs=96.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC---CcEEEeecCCCCChhHHHHHHHhcC-----------------C-CeEEEEeCC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLN---FDVCDLELTTLRDNTKLRNVLIATE-----------------N-KSILAVEDI 91 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~---~~~~~i~~~~~~~~~~l~~~~~~~~-----------------~-~~Il~lDei 91 (192)
++||.||+|+|||-+|+++|..+. .+++.++++.+.....+.+.+-... + .+|++||||
T Consensus 523 sFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEI 602 (786)
T COG0542 523 SFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEI 602 (786)
T ss_pred EEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechh
Confidence 488899999999999999999986 8899999999887655555444331 3 489999999
Q ss_pred CccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccC--CC-cceEEEEe-----------
Q 040463 92 DCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRG--SQ-YSQLIIKT----------- 157 (192)
Q Consensus 92 d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~--~~-~~~iiv~t----------- 157 (192)
++..+ .+++-|++.+|.-.-.+ -+| .+ ++.|||+|
T Consensus 603 EKAHp------------------------------dV~nilLQVlDdGrLTD-~~Gr~VdFrNtiIImTSN~Gs~~i~~~ 651 (786)
T COG0542 603 EKAHP------------------------------DVFNLLLQVLDDGRLTD-GQGRTVDFRNTIIIMTSNAGSEEILRD 651 (786)
T ss_pred hhcCH------------------------------HHHHHHHHHhcCCeeec-CCCCEEecceeEEEEecccchHHHHhh
Confidence 99765 78999999997554332 001 01 35688888
Q ss_pred ---------------------CCccccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 158 ---------------------DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 158 ---------------------~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
....|+++. |++..|.|.+.+.+...+|+..+|
T Consensus 652 ~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L 705 (786)
T COG0542 652 ADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQL 705 (786)
T ss_pred ccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHH
Confidence 112345555 999999999999999999987654
No 123
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=2.1e-11 Score=109.05 Aligned_cols=118 Identities=14% Similarity=0.220 Sum_probs=82.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEeecCCCCChhHHHHHHHhc------C
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFD------------------------VCDLELTTLRDNTKLRNVLIAT------E 81 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~------------------------~~~i~~~~~~~~~~l~~~~~~~------~ 81 (192)
..+||+||+|+|||++|+.+|+.+... ++.++...-...++++.+.... .
T Consensus 39 ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g 118 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEG 118 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcC
Confidence 479999999999999999999988642 4455543323334444432222 2
Q ss_pred CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---C
Q 040463 82 NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---D 158 (192)
Q Consensus 82 ~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~ 158 (192)
+..|+||||+|.+-. ..++.|+..++.... ...+|++| .
T Consensus 119 ~~kVIIIDEad~Lt~------------------------------~a~naLLk~LEEP~~--------~~ifILaTt~~~ 160 (624)
T PRK14959 119 RYKVFIIDEAHMLTR------------------------------EAFNALLKTLEEPPA--------RVTFVLATTEPH 160 (624)
T ss_pred CceEEEEEChHhCCH------------------------------HHHHHHHHHhhccCC--------CEEEEEecCChh
Confidence 457999999999843 346778888776433 22355555 5
Q ss_pred CccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 159 LTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 159 ~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
.+.+.+++ |+ ..++|+.++.++...+++.
T Consensus 161 kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~ 189 (624)
T PRK14959 161 KFPVTIVS--RC-QHFTFTRLSEAGLEAHLTK 189 (624)
T ss_pred hhhHHHHh--hh-hccccCCCCHHHHHHHHHH
Confidence 67778887 87 4689999999998877764
No 124
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.27 E-value=1.7e-11 Score=100.01 Aligned_cols=116 Identities=20% Similarity=0.265 Sum_probs=79.8
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCC------cEEEeecCCCCChhHHHHHHHhc-----------C---C-CeEEEEeC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNF------DVCDLELTTLRDNTKLRNVLIAT-----------E---N-KSILAVED 90 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~------~~~~i~~~~~~~~~~l~~~~~~~-----------~---~-~~Il~lDe 90 (192)
..+|||||||||||+.++++|+++.. .++..+.+...+.+-.+...+.. . . .-|++|||
T Consensus 58 p~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDE 137 (346)
T KOG0989|consen 58 PHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDE 137 (346)
T ss_pred ceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEec
Confidence 36999999999999999999999854 34455555544322222111111 1 2 37999999
Q ss_pred CCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---CCccccccCC
Q 040463 91 IDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNLLLRP 167 (192)
Q Consensus 91 id~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~~l~~~l~~~ 167 (192)
+|.+-. ...+.|...|+.++.. -++++++ +.|.+-+.+
T Consensus 138 cdsmts------------------------------daq~aLrr~mE~~s~~--------trFiLIcnylsrii~pi~S- 178 (346)
T KOG0989|consen 138 CDSMTS------------------------------DAQAALRRTMEDFSRT--------TRFILICNYLSRIIRPLVS- 178 (346)
T ss_pred hhhhhH------------------------------HHHHHHHHHHhccccc--------eEEEEEcCChhhCChHHHh-
Confidence 999854 5678888999987653 3677777 778888887
Q ss_pred CcceeEEEecCCCHHHHHHHH
Q 040463 168 GCMDMHIHMSYCTPCGLKMLA 188 (192)
Q Consensus 168 ~rf~~~i~~~~p~~~~r~~i~ 188 (192)
|+.+ ..|++...+.....+
T Consensus 179 -RC~K-frFk~L~d~~iv~rL 197 (346)
T KOG0989|consen 179 -RCQK-FRFKKLKDEDIVDRL 197 (346)
T ss_pred -hHHH-hcCCCcchHHHHHHH
Confidence 8744 778777775544443
No 125
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.1e-10 Score=95.89 Aligned_cols=65 Identities=28% Similarity=0.426 Sum_probs=54.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC--------hhHHHHHHHhcC------CCeEEEEeCCCcccc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD--------NTKLRNVLIATE------NKSILAVEDIDCSIN 96 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~--------~~~l~~~~~~~~------~~~Il~lDeid~l~~ 96 (192)
.+|||.||.|||||.||+.+|+.++.||..-+++++.. +.-+.+.+..+. ..+|++|||||.++.
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIar 176 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIAR 176 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhc
Confidence 47999999999999999999999999999999988864 223445555553 689999999999975
No 126
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.25 E-value=7.2e-11 Score=104.87 Aligned_cols=128 Identities=19% Similarity=0.237 Sum_probs=82.4
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEeecCCCC-ChhHHHH---------------HH-------
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL----------NFDVCDLELTTLR-DNTKLRN---------------VL------- 77 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~----------~~~~~~i~~~~~~-~~~~l~~---------------~~------- 77 (192)
+..+||+||||||||++|+++++.. +.+++.++|+... ....+.+ .+
T Consensus 86 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~ 165 (531)
T TIGR02902 86 PQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQ 165 (531)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCccc
Confidence 4579999999999999999998643 3578888876421 1000000 00
Q ss_pred -----HhcCCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCcc---------ccc
Q 040463 78 -----IATENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVC---------RAV 143 (192)
Q Consensus 78 -----~~~~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~ 143 (192)
...+.+++|||||++.+.. ..++.|+..++.-. ...
T Consensus 166 ~~~G~l~~a~gG~L~IdEI~~L~~------------------------------~~q~~LL~~Le~~~~~~~~~~~~~~~ 215 (531)
T TIGR02902 166 PKPGAVTRAHGGVLFIDEIGELHP------------------------------VQMNKLLKVLEDRKVFLDSAYYNSEN 215 (531)
T ss_pred ccCchhhccCCcEEEEechhhCCH------------------------------HHHHHHHHHHHhCeeeeccccccccC
Confidence 0112468999999999865 34555665553210 000
Q ss_pred c----------ccCC-CcceEEEEe----CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 144 E----------MRGS-QYSQLIIKT----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 144 ~----------~~~~-~~~~iiv~t----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
. ..+. .+.++|++| +.+++++++ |+ ..|.|++++.+++.+|++++
T Consensus 216 ~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei~~Il~~~ 275 (531)
T TIGR02902 216 PNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDEEIKEIAKNA 275 (531)
T ss_pred cccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hh-heeeCCCCCHHHHHHHHHHH
Confidence 0 0000 133566666 689999998 88 46899999999999998865
No 127
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.25 E-value=1.8e-10 Score=95.52 Aligned_cols=118 Identities=15% Similarity=0.160 Sum_probs=77.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEeecCCCCChhHHHHHHHh----c----CCCeEEEEeCCCccccccC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLN-----FDVCDLELTTLRDNTKLRNVLIA----T----ENKSILAVEDIDCSINLQG 99 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~-----~~~~~i~~~~~~~~~~l~~~~~~----~----~~~~Il~lDeid~l~~~~~ 99 (192)
.++|+||||||||++++++++.+. ..++.++++.......+.+.+.. . ..+.++++||+|.+..
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~--- 116 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS--- 116 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH---
Confidence 589999999999999999999873 34555554443332222222211 1 1356999999999854
Q ss_pred ccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---CCccccccCCCcceeEEEe
Q 040463 100 RHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNLLLRPGCMDMHIHM 176 (192)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~~l~~~l~~~~rf~~~i~~ 176 (192)
.....|...++.... ...+|+++ ..+.+.+.+ |+. .++|
T Consensus 117 ---------------------------~~~~~L~~~le~~~~--------~~~lIl~~~~~~~l~~~l~s--r~~-~~~~ 158 (319)
T PRK00440 117 ---------------------------DAQQALRRTMEMYSQ--------NTRFILSCNYSSKIIDPIQS--RCA-VFRF 158 (319)
T ss_pred ---------------------------HHHHHHHHHHhcCCC--------CCeEEEEeCCccccchhHHH--Hhh-eeee
Confidence 223456666655443 22455555 556666777 775 5899
Q ss_pred cCCCHHHHHHHHHhc
Q 040463 177 SYCTPCGLKMLASNY 191 (192)
Q Consensus 177 ~~p~~~~r~~i~~~~ 191 (192)
++++.++...+++++
T Consensus 159 ~~l~~~ei~~~l~~~ 173 (319)
T PRK00440 159 SPLKKEAVAERLRYI 173 (319)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999998887654
No 128
>PRK06620 hypothetical protein; Validated
Probab=99.25 E-value=1.7e-11 Score=96.95 Aligned_cols=106 Identities=19% Similarity=0.169 Sum_probs=70.2
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHHHHHHhcCCCeEEEEeCCCccccccCccccccCCCCCC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRNVLIATENKSILAVEDIDCSINLQGRHSQAKTLNPVN 111 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~ 111 (192)
+.++||||||||||++++++++..+..++. .... ....+ ....+++|||+|.+..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----~~~~~---~~~d~lliDdi~~~~~--------------- 99 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----NEEIL---EKYNAFIIEDIENWQE--------------- 99 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----chhHH---hcCCEEEEeccccchH---------------
Confidence 579999999999999999999988754322 1110 01111 2457899999995421
Q ss_pred CCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe-------CCccccccCCCcce--eEEEecCCCHH
Q 040463 112 SNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-------DLTLNLLLRPGCMD--MHIHMSYCTPC 182 (192)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-------~~l~~~l~~~~rf~--~~i~~~~p~~~ 182 (192)
..+...++.+.++. +.+++| -.+ +++++ |+. ..+.+.+|+.+
T Consensus 100 ------------------~~lf~l~N~~~e~g--------~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~ 150 (214)
T PRK06620 100 ------------------PALLHIFNIINEKQ--------KYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDE 150 (214)
T ss_pred ------------------HHHHHHHHHHHhcC--------CEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHH
Confidence 24555555554432 244444 135 67887 874 35899999999
Q ss_pred HHHHHHHhc
Q 040463 183 GLKMLASNY 191 (192)
Q Consensus 183 ~r~~i~~~~ 191 (192)
.+.+++++.
T Consensus 151 ~~~~~l~k~ 159 (214)
T PRK06620 151 LIKILIFKH 159 (214)
T ss_pred HHHHHHHHH
Confidence 999888653
No 129
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=2e-10 Score=97.67 Aligned_cols=119 Identities=13% Similarity=0.226 Sum_probs=80.5
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCC------------cEEEeecCCCCChhHHHHHHHhcC------CCeEEEEeCCC
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNF------------DVCDLELTTLRDNTKLRNVLIATE------NKSILAVEDID 92 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~------------~~~~i~~~~~~~~~~l~~~~~~~~------~~~Il~lDeid 92 (192)
+..+|||||||+|||++++++++.+.. .++.++.......+.+++.+..+. .+.|+++||+|
T Consensus 39 ~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~ 118 (367)
T PRK14970 39 AQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVH 118 (367)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChh
Confidence 357999999999999999999998743 223333333233356666655432 45799999999
Q ss_pred ccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---CCccccccCCCc
Q 040463 93 CSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNLLLRPGC 169 (192)
Q Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~~l~~~l~~~~r 169 (192)
.+.. ..++.++..++..... ..+|+++ ..+.+.+.+ |
T Consensus 119 ~l~~------------------------------~~~~~ll~~le~~~~~--------~~~Il~~~~~~kl~~~l~s--r 158 (367)
T PRK14970 119 MLSS------------------------------AAFNAFLKTLEEPPAH--------AIFILATTEKHKIIPTILS--R 158 (367)
T ss_pred hcCH------------------------------HHHHHHHHHHhCCCCc--------eEEEEEeCCcccCCHHHHh--c
Confidence 8743 2356677666654321 2344444 678888887 7
Q ss_pred ceeEEEecCCCHHHHHHHHHh
Q 040463 170 MDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 170 f~~~i~~~~p~~~~r~~i~~~ 190 (192)
+ ..+++++|+.++...++..
T Consensus 159 ~-~~v~~~~~~~~~l~~~l~~ 178 (367)
T PRK14970 159 C-QIFDFKRITIKDIKEHLAG 178 (367)
T ss_pred c-eeEecCCccHHHHHHHHHH
Confidence 6 3589999999988776654
No 130
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.24 E-value=4.1e-11 Score=106.74 Aligned_cols=119 Identities=14% Similarity=0.253 Sum_probs=84.0
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCC------------------------cEEEeecCCCCChhHHHHHHHhcC-----
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNF------------------------DVCDLELTTLRDNTKLRNVLIATE----- 81 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~------------------------~~~~i~~~~~~~~~~l~~~~~~~~----- 81 (192)
+.++||+||+|+|||++|+.+|+.+.. .++.++..+..+-++++.......
T Consensus 38 ~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~ 117 (605)
T PRK05896 38 THAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTT 117 (605)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhh
Confidence 357999999999999999999998742 334444443334445665554332
Q ss_pred -CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---
Q 040463 82 -NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT--- 157 (192)
Q Consensus 82 -~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t--- 157 (192)
..-|++|||+|.+-. ...+.|+..++....+ ..+|++|
T Consensus 118 ~~~KVIIIDEad~Lt~------------------------------~A~NaLLKtLEEPp~~--------tvfIL~Tt~~ 159 (605)
T PRK05896 118 FKYKVYIIDEAHMLST------------------------------SAWNALLKTLEEPPKH--------VVFIFATTEF 159 (605)
T ss_pred CCcEEEEEechHhCCH------------------------------HHHHHHHHHHHhCCCc--------EEEEEECCCh
Confidence 346999999998743 2457788888765433 2344555
Q ss_pred CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 158 DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 158 ~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
..+.+.+++ |+. .++|++++.++....++.
T Consensus 160 ~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~ 189 (605)
T PRK05896 160 QKIPLTIIS--RCQ-RYNFKKLNNSELQELLKS 189 (605)
T ss_pred HhhhHHHHh--hhh-hcccCCCCHHHHHHHHHH
Confidence 788888888 874 699999999998876654
No 131
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.23 E-value=7.9e-11 Score=106.79 Aligned_cols=119 Identities=15% Similarity=0.241 Sum_probs=83.5
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCc---------------------EEEeecCCCCChhHHHHHHHhcC------CC
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFD---------------------VCDLELTTLRDNTKLRNVLIATE------NK 83 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~---------------------~~~i~~~~~~~~~~l~~~~~~~~------~~ 83 (192)
+..+||+||+|+|||++|+++|+.+... ++.++..+-.+.++++++...+. +.
T Consensus 40 ~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~ 119 (725)
T PRK07133 40 SHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKY 119 (725)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCC
Confidence 3468999999999999999999987542 12222222122344555554443 45
Q ss_pred eEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---CCc
Q 040463 84 SILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLT 160 (192)
Q Consensus 84 ~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~~l 160 (192)
.|++|||+|.+.. ...+.|+..|+..... ..+|++| +.+
T Consensus 120 KV~IIDEa~~LT~------------------------------~A~NALLKtLEEPP~~--------tifILaTte~~KL 161 (725)
T PRK07133 120 KIYIIDEVHMLSK------------------------------SAFNALLKTLEEPPKH--------VIFILATTEVHKI 161 (725)
T ss_pred EEEEEEChhhCCH------------------------------HHHHHHHHHhhcCCCc--------eEEEEEcCChhhh
Confidence 7999999999753 3567888888876432 2445555 788
Q ss_pred cccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 161 LNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 161 ~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
.+.+++ |+ ..++|.+++.++..+.++.
T Consensus 162 l~TI~S--Rc-q~ieF~~L~~eeI~~~L~~ 188 (725)
T PRK07133 162 PLTILS--RV-QRFNFRRISEDEIVSRLEF 188 (725)
T ss_pred hHHHHh--hc-eeEEccCCCHHHHHHHHHH
Confidence 888888 88 4799999999998877654
No 132
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=1e-10 Score=102.74 Aligned_cols=119 Identities=18% Similarity=0.248 Sum_probs=80.6
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCC------------------------cEEEeecCCCCChhHHHHHHHhc------
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNF------------------------DVCDLELTTLRDNTKLRNVLIAT------ 80 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~------------------------~~~~i~~~~~~~~~~l~~~~~~~------ 80 (192)
+..+|||||+|+|||++|+.+|+.++. .++.++.+.-.+.+.++.+...+
T Consensus 38 ~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~ 117 (486)
T PRK14953 38 SHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIK 117 (486)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCccc
Confidence 345889999999999999999998753 13333333323333444443332
Q ss_pred CCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---
Q 040463 81 ENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT--- 157 (192)
Q Consensus 81 ~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t--- 157 (192)
++..|++|||+|.+.. ..++.|+..++..... ..+|++|
T Consensus 118 ~~~KVvIIDEad~Lt~------------------------------~a~naLLk~LEepp~~--------~v~Il~tt~~ 159 (486)
T PRK14953 118 GKYKVYIIDEAHMLTK------------------------------EAFNALLKTLEEPPPR--------TIFILCTTEY 159 (486)
T ss_pred CCeeEEEEEChhhcCH------------------------------HHHHHHHHHHhcCCCC--------eEEEEEECCH
Confidence 2467999999998743 3457777777765432 2344455
Q ss_pred CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 158 DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 158 ~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
+.+.+.+.+ |+. .+.|++++.++...+++.
T Consensus 160 ~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~ 189 (486)
T PRK14953 160 DKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKR 189 (486)
T ss_pred HHHHHHHHH--hce-EEEcCCCCHHHHHHHHHH
Confidence 567778887 774 699999999998877765
No 133
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=6.8e-11 Score=105.95 Aligned_cols=119 Identities=13% Similarity=0.151 Sum_probs=85.1
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEeecCCCCChhHHHHHHHhcC-----
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFD------------------------VCDLELTTLRDNTKLRNVLIATE----- 81 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~------------------------~~~i~~~~~~~~~~l~~~~~~~~----- 81 (192)
+..+|||||+|+|||++++.+|+.+... ++.++..+..+.++++.+.....
T Consensus 38 ~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~ 117 (576)
T PRK14965 38 AHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSR 117 (576)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhcccc
Confidence 3468999999999999999999997532 44454443334445655554432
Q ss_pred -CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---
Q 040463 82 -NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT--- 157 (192)
Q Consensus 82 -~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t--- 157 (192)
+.-|++|||+|.+.. ...+.|+..|+....+ ..+|++|
T Consensus 118 ~~~KVvIIdev~~Lt~------------------------------~a~naLLk~LEepp~~--------~~fIl~t~~~ 159 (576)
T PRK14965 118 SRYKIFIIDEVHMLST------------------------------NAFNALLKTLEEPPPH--------VKFIFATTEP 159 (576)
T ss_pred CCceEEEEEChhhCCH------------------------------HHHHHHHHHHHcCCCC--------eEEEEEeCCh
Confidence 356999999999754 4568888888876543 2455556
Q ss_pred CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 158 DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 158 ~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
+.|.+.+++ |+ ..++|..++.++....+..
T Consensus 160 ~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~ 189 (576)
T PRK14965 160 HKVPITILS--RC-QRFDFRRIPLQKIVDRLRY 189 (576)
T ss_pred hhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHH
Confidence 788888888 87 4689999999887766543
No 134
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=1.7e-10 Score=103.95 Aligned_cols=117 Identities=15% Similarity=0.236 Sum_probs=82.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCC--------------------------cEEEeecCCCCChhHHHHHHHhcC----
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNF--------------------------DVCDLELTTLRDNTKLRNVLIATE---- 81 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~--------------------------~~~~i~~~~~~~~~~l~~~~~~~~---- 81 (192)
..+||+||+|+|||++|+++|+.+.. .++.++.......+.+++++..+.
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~ 118 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPV 118 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChh
Confidence 47999999999999999999999854 233444433334456676665543
Q ss_pred --CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe--
Q 040463 82 --NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-- 157 (192)
Q Consensus 82 --~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-- 157 (192)
+.-|++|||+|.+-. ...+.|+..++.-... ..+|++|
T Consensus 119 ~~~~KViIIDEad~Lt~------------------------------~a~naLLK~LEePp~~--------tvfIL~t~~ 160 (620)
T PRK14948 119 QARWKVYVIDECHMLST------------------------------AAFNALLKTLEEPPPR--------VVFVLATTD 160 (620)
T ss_pred cCCceEEEEECccccCH------------------------------HHHHHHHHHHhcCCcC--------eEEEEEeCC
Confidence 357999999999743 4567888888865432 2344445
Q ss_pred -CCccccccCCCcceeEEEecCCCHHHHHHHHH
Q 040463 158 -DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLAS 189 (192)
Q Consensus 158 -~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~ 189 (192)
..+.+.+++ |+ ..++|+.++.++....+.
T Consensus 161 ~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~ 190 (620)
T PRK14948 161 PQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLS 190 (620)
T ss_pred hhhhhHHHHh--he-eEEEecCCCHHHHHHHHH
Confidence 567778887 77 568999998887765554
No 135
>PRK09087 hypothetical protein; Validated
Probab=99.20 E-value=6.6e-11 Score=94.35 Aligned_cols=111 Identities=17% Similarity=0.192 Sum_probs=73.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHHHHHHhcCCCeEEEEeCCCccccccCccccccCCCCCCC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRNVLIATENKSILAVEDIDCSINLQGRHSQAKTLNPVNS 112 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~ 112 (192)
-++||||+|+|||+|++++++..+..++.. ..+.. + .+... ...+|++||++.+..
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i~~--~~~~~-~----~~~~~-~~~~l~iDDi~~~~~---------------- 101 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDALLIHP--NEIGS-D----AANAA-AEGPVLIEDIDAGGF---------------- 101 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCEEecH--HHcch-H----HHHhh-hcCeEEEECCCCCCC----------------
Confidence 499999999999999999998876554433 22221 1 11111 125888999998632
Q ss_pred CCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe-------CCccccccCCCcce--eEEEecCCCHHH
Q 040463 113 NAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-------DLTLNLLLRPGCMD--MHIHMSYCTPCG 183 (192)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-------~~l~~~l~~~~rf~--~~i~~~~p~~~~ 183 (192)
...++...++.+.+.. ..+++.+ ....+.+++ |+. ..+++.+|+.+.
T Consensus 102 ---------------~~~~lf~l~n~~~~~g-------~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~ 157 (226)
T PRK09087 102 ---------------DETGLFHLINSVRQAG-------TSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDAL 157 (226)
T ss_pred ---------------CHHHHHHHHHHHHhCC-------CeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHH
Confidence 1245666666665431 2344444 224678888 774 779999999999
Q ss_pred HHHHHHhc
Q 040463 184 LKMLASNY 191 (192)
Q Consensus 184 r~~i~~~~ 191 (192)
|.+++++.
T Consensus 158 ~~~iL~~~ 165 (226)
T PRK09087 158 LSQVIFKL 165 (226)
T ss_pred HHHHHHHH
Confidence 99999864
No 136
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.20 E-value=1.5e-10 Score=103.77 Aligned_cols=119 Identities=12% Similarity=0.196 Sum_probs=84.6
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCcE-----------------------------EEeecCCCCChhHHHHHHHhcC
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFDV-----------------------------CDLELTTLRDNTKLRNVLIATE 81 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~~-----------------------------~~i~~~~~~~~~~l~~~~~~~~ 81 (192)
+..+||+||+|+|||++|+.+|+.+.... +.++..+..+-++++.++....
T Consensus 46 ~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~ 125 (598)
T PRK09111 46 AQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVR 125 (598)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHH
Confidence 34799999999999999999999885432 2222222233456666655442
Q ss_pred ------CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEE
Q 040463 82 ------NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLII 155 (192)
Q Consensus 82 ------~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv 155 (192)
+.-|++|||+|.+.. ...+.|+..++....+ ..+|+
T Consensus 126 ~~P~~a~~KVvIIDEad~Ls~------------------------------~a~naLLKtLEePp~~--------~~fIl 167 (598)
T PRK09111 126 YRPVSARYKVYIIDEVHMLST------------------------------AAFNALLKTLEEPPPH--------VKFIF 167 (598)
T ss_pred hchhcCCcEEEEEEChHhCCH------------------------------HHHHHHHHHHHhCCCC--------eEEEE
Confidence 467999999999853 3567888888776543 24556
Q ss_pred Ee---CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 156 KT---DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 156 ~t---~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
+| +.+.+.+++ |+ ..++|..++.++....++.
T Consensus 168 ~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~ 202 (598)
T PRK09111 168 ATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSR 202 (598)
T ss_pred EeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHH
Confidence 66 667777887 87 5699999999998877765
No 137
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=8.5e-11 Score=101.04 Aligned_cols=119 Identities=8% Similarity=0.147 Sum_probs=79.3
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCc--------------------------------EEEeecCCCCChhHHHHHHH
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFD--------------------------------VCDLELTTLRDNTKLRNVLI 78 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~--------------------------------~~~i~~~~~~~~~~l~~~~~ 78 (192)
+..+||+||||+|||++|+++|+.+... +..++.....+.+++++...
T Consensus 38 ~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~ 117 (397)
T PRK14955 38 GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRE 117 (397)
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHH
Confidence 3469999999999999999999988542 22222222222345555544
Q ss_pred hcC------CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcce
Q 040463 79 ATE------NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQ 152 (192)
Q Consensus 79 ~~~------~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ 152 (192)
... ..-|++|||+|.+.. ...+.|+..++..... ..
T Consensus 118 ~~~~~p~~~~~kvvIIdea~~l~~------------------------------~~~~~LLk~LEep~~~--------t~ 159 (397)
T PRK14955 118 NVRYGPQKGRYRVYIIDEVHMLSI------------------------------AAFNAFLKTLEEPPPH--------AI 159 (397)
T ss_pred HHhhchhcCCeEEEEEeChhhCCH------------------------------HHHHHHHHHHhcCCCC--------eE
Confidence 442 457999999999743 2456677777655432 24
Q ss_pred EEEEe---CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 153 LIIKT---DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 153 iiv~t---~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
+|+++ ..+.+.+.+ |+. .++|.+++.++..+.++.
T Consensus 160 ~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~ 197 (397)
T PRK14955 160 FIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQG 197 (397)
T ss_pred EEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHH
Confidence 55555 566677776 664 689999999888766654
No 138
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.18 E-value=2.6e-10 Score=106.13 Aligned_cols=123 Identities=15% Similarity=0.189 Sum_probs=82.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCChh-------------------HHHHHHHhcCCCeEEEEeCC
Q 040463 34 YLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDNT-------------------KLRNVLIATENKSILAVEDI 91 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~~-------------------~l~~~~~~~~~~~Il~lDei 91 (192)
++|+||+|+|||.+|+++|..+ ...++.++++.+.... .+...+.. ...+||+|||+
T Consensus 599 ~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~-~p~svvllDEi 677 (852)
T TIGR03345 599 FLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRR-KPYSVVLLDEV 677 (852)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHh-CCCcEEEEech
Confidence 7899999999999999999988 4567788877653221 23333333 35699999999
Q ss_pred CccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCC--C-cceEEEEe-----------
Q 040463 92 DCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGS--Q-YSQLIIKT----------- 157 (192)
Q Consensus 92 d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~--~-~~~iiv~t----------- 157 (192)
+...+ ...+.|+..++.-.-.+ ..|. + ...++|+|
T Consensus 678 eka~~------------------------------~v~~~Llq~ld~g~l~d-~~Gr~vd~~n~iiI~TSNlg~~~~~~~ 726 (852)
T TIGR03345 678 EKAHP------------------------------DVLELFYQVFDKGVMED-GEGREIDFKNTVILLTSNAGSDLIMAL 726 (852)
T ss_pred hhcCH------------------------------HHHHHHHHHhhcceeec-CCCcEEeccccEEEEeCCCchHHHHHh
Confidence 98654 45666777776443111 0010 0 23466666
Q ss_pred ----------------------CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 158 ----------------------DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 158 ----------------------~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
..+.|++++ |++ .|.|.+++.++..+|++..
T Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~ 779 (852)
T TIGR03345 727 CADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLK 779 (852)
T ss_pred ccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHH
Confidence 013455566 886 7999999999999998764
No 139
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.17 E-value=3.4e-10 Score=100.06 Aligned_cols=119 Identities=15% Similarity=0.215 Sum_probs=86.1
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhC------------------------CcEEEeecCCCCChhHHHHHHHhc------
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLN------------------------FDVCDLELTTLRDNTKLRNVLIAT------ 80 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~------------------------~~~~~i~~~~~~~~~~l~~~~~~~------ 80 (192)
+..+|||||+|+|||++++++|+.+. ..++.++...-.+-+.+++.....
T Consensus 36 ~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~ 115 (535)
T PRK08451 36 AHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSM 115 (535)
T ss_pred CeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCccc
Confidence 34689999999999999999999873 124455544323345676666543
Q ss_pred CCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---
Q 040463 81 ENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT--- 157 (192)
Q Consensus 81 ~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t--- 157 (192)
++.-|++|||+|.+.. ..++.|+..++..... ..+|++|
T Consensus 116 ~~~KVvIIDEad~Lt~------------------------------~A~NALLK~LEEpp~~--------t~FIL~ttd~ 157 (535)
T PRK08451 116 ARFKIFIIDEVHMLTK------------------------------EAFNALLKTLEEPPSY--------VKFILATTDP 157 (535)
T ss_pred CCeEEEEEECcccCCH------------------------------HHHHHHHHHHhhcCCc--------eEEEEEECCh
Confidence 2346999999999854 4667888888776442 3456666
Q ss_pred CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 158 DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 158 ~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
..+.+.+++ |+ ..++|.+++.++..+.+.+
T Consensus 158 ~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~ 187 (535)
T PRK08451 158 LKLPATILS--RT-QHFRFKQIPQNSIISHLKT 187 (535)
T ss_pred hhCchHHHh--hc-eeEEcCCCCHHHHHHHHHH
Confidence 678888998 86 5799999999988776654
No 140
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.16 E-value=3.7e-10 Score=98.29 Aligned_cols=128 Identities=13% Similarity=0.104 Sum_probs=78.2
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhCC--cEEEeecC--C---CCChhHHHH-----HHHhcC-----CCeEEEEeCCC
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANYLNF--DVCDLELT--T---LRDNTKLRN-----VLIATE-----NKSILAVEDID 92 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~~~~--~~~~i~~~--~---~~~~~~l~~-----~~~~~~-----~~~Il~lDeid 92 (192)
....+||+||||||||++|++++..++. ++..+.+. . +.+...+.. .|.... ...++|+|||+
T Consensus 38 ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ 117 (498)
T PRK13531 38 SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIW 117 (498)
T ss_pred cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeecccc
Confidence 3457999999999999999999998753 23322222 1 111110111 111111 23489999998
Q ss_pred ccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCcc-ccccccCCCcceEEEEe-CCccc------cc
Q 040463 93 CSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVC-RAVEMRGSQYSQLIIKT-DLTLN------LL 164 (192)
Q Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~~~~~~~~iiv~t-~~l~~------~l 164 (192)
.+.+ .+++.|+..|..-. ....-...-+.++++++ ..+++ ++
T Consensus 118 rasp------------------------------~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL 167 (498)
T PRK13531 118 KAGP------------------------------AILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEAL 167 (498)
T ss_pred cCCH------------------------------HHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHh
Confidence 7644 67788888883222 11100000034576666 66775 88
Q ss_pred cCCCcceeEEEecCCC-HHHHHHHHH
Q 040463 165 LRPGCMDMHIHMSYCT-PCGLKMLAS 189 (192)
Q Consensus 165 ~~~~rf~~~i~~~~p~-~~~r~~i~~ 189 (192)
.. ||...+.+|+|+ .+...+|+.
T Consensus 168 ~D--RFliri~vp~l~~~~~e~~lL~ 191 (498)
T PRK13531 168 YD--RMLIRLWLDKVQDKANFRSMLT 191 (498)
T ss_pred Hh--hEEEEEECCCCCchHHHHHHHH
Confidence 88 998899999997 455567764
No 141
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.16 E-value=5e-10 Score=100.15 Aligned_cols=129 Identities=18% Similarity=0.225 Sum_probs=86.5
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHHHHHHhc----------CCCeEEEEeCCCccccc
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRNVLIAT----------ENKSILAVEDIDCSINL 97 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~~~~~~~----------~~~~Il~lDeid~l~~~ 97 (192)
.+..+-+||+||||-||||||+.+|++.|..++++++++-.+...+...+..+ .+|.-|++||||-...
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~- 401 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPR- 401 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcH-
Confidence 45556689999999999999999999999999999999987766555554433 3799999999997531
Q ss_pred cCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhc---Cccccccc---------cCCC-cceEEEEe-CCcccc
Q 040463 98 QGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFID---GVCRAVEM---------RGSQ-YSQLIIKT-DLTLNL 163 (192)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~---~~~~~~~~---------~~~~-~~~iiv~t-~~l~~~ 163 (192)
.....++..+. ........ ++.. .-.||.|+ +-.-|+
T Consensus 402 -----------------------------~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPa 452 (877)
T KOG1969|consen 402 -----------------------------AAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPA 452 (877)
T ss_pred -----------------------------HHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchh
Confidence 22223332221 00000000 0000 12377777 777888
Q ss_pred ccCCCcceeEEEecCCCHHHHHH
Q 040463 164 LLRPGCMDMHIHMSYCTPCGLKM 186 (192)
Q Consensus 164 l~~~~rf~~~i~~~~p~~~~r~~ 186 (192)
|+.---|.+.|.|.+|+.....+
T Consensus 453 LR~Lr~~A~ii~f~~p~~s~Lv~ 475 (877)
T KOG1969|consen 453 LRPLRPFAEIIAFVPPSQSRLVE 475 (877)
T ss_pred hhhcccceEEEEecCCChhHHHH
Confidence 86443688899999998875443
No 142
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.16 E-value=3e-10 Score=99.07 Aligned_cols=119 Identities=16% Similarity=0.221 Sum_probs=81.1
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCC-------------------------cEEEeecCCCCChhHHHHHHHhc-----
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNF-------------------------DVCDLELTTLRDNTKLRNVLIAT----- 80 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~-------------------------~~~~i~~~~~~~~~~l~~~~~~~----- 80 (192)
+..+|||||||+|||++|+++|+.+.. .++.++.....+.+.++.+....
T Consensus 39 ~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~ 118 (451)
T PRK06305 39 AHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPS 118 (451)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhh
Confidence 346999999999999999999998743 23344433322334444332222
Q ss_pred -CCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe--
Q 040463 81 -ENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-- 157 (192)
Q Consensus 81 -~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-- 157 (192)
....|++|||+|.+.. ...+.|+..++..... ..+|+++
T Consensus 119 ~~~~kvvIIdead~lt~------------------------------~~~n~LLk~lEep~~~--------~~~Il~t~~ 160 (451)
T PRK06305 119 KSRYKIYIIDEVHMLTK------------------------------EAFNSLLKTLEEPPQH--------VKFFLATTE 160 (451)
T ss_pred cCCCEEEEEecHHhhCH------------------------------HHHHHHHHHhhcCCCC--------ceEEEEeCC
Confidence 3578999999998743 2457788887775432 2455555
Q ss_pred -CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 158 -DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 158 -~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
..+.+.+.+ |+ ..++|++++.++....+..
T Consensus 161 ~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~ 191 (451)
T PRK06305 161 IHKIPGTILS--RC-QKMHLKRIPEETIIDKLAL 191 (451)
T ss_pred hHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHH
Confidence 567788887 77 4699999999998776654
No 143
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=4.2e-10 Score=101.21 Aligned_cols=119 Identities=8% Similarity=0.146 Sum_probs=81.4
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCc--------------------------------EEEeecCCCCChhHHHHHHH
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFD--------------------------------VCDLELTTLRDNTKLRNVLI 78 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~--------------------------------~~~i~~~~~~~~~~l~~~~~ 78 (192)
+..+||+||+|||||++|+.+|+.+... +..++.....+.++++....
T Consensus 38 ~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e 117 (620)
T PRK14954 38 GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRE 117 (620)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHH
Confidence 3469999999999999999999998652 11122212222355665554
Q ss_pred hc------CCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcce
Q 040463 79 AT------ENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQ 152 (192)
Q Consensus 79 ~~------~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ 152 (192)
.. +..-|++|||+|.+.. ...+.|+..++...... .
T Consensus 118 ~~~~~P~~~~~KVvIIdEad~Lt~------------------------------~a~naLLK~LEePp~~t--------v 159 (620)
T PRK14954 118 NVRYGPQKGRYRVYIIDEVHMLST------------------------------AAFNAFLKTLEEPPPHA--------I 159 (620)
T ss_pred HHHhhhhcCCCEEEEEeChhhcCH------------------------------HHHHHHHHHHhCCCCCe--------E
Confidence 44 2457999999999743 34577888887765432 3
Q ss_pred EEEEe---CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 153 LIIKT---DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 153 iiv~t---~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
+|++| ..+.+.+.+ |+ ..++|.+++.++....++.
T Consensus 160 ~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~ 197 (620)
T PRK14954 160 FIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQM 197 (620)
T ss_pred EEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHH
Confidence 45555 677777777 66 5799999999987766653
No 144
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=4e-10 Score=101.28 Aligned_cols=118 Identities=14% Similarity=0.236 Sum_probs=79.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCC-------------------------cEEEeecCCCCChhHHHHHHHhc------
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNF-------------------------DVCDLELTTLRDNTKLRNVLIAT------ 80 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~-------------------------~~~~i~~~~~~~~~~l~~~~~~~------ 80 (192)
..+|||||+|+|||++++.+|+.+.. .++.++.....+.+.++++....
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~ 118 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPAL 118 (585)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCccc
Confidence 35899999999999999999998743 12333433323344455444332
Q ss_pred CCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---
Q 040463 81 ENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT--- 157 (192)
Q Consensus 81 ~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t--- 157 (192)
...-|++|||+|.+.. ..++.|+..++....+ ..+|+++
T Consensus 119 ~~~kVvIIDEa~~L~~------------------------------~a~naLLk~LEepp~~--------tv~Il~t~~~ 160 (585)
T PRK14950 119 ARYKVYIIDEVHMLST------------------------------AAFNALLKTLEEPPPH--------AIFILATTEV 160 (585)
T ss_pred CCeEEEEEeChHhCCH------------------------------HHHHHHHHHHhcCCCC--------eEEEEEeCCh
Confidence 2467999999998743 3467788777765432 2344444
Q ss_pred CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 158 DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 158 ~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
+.+.+.+.+ |+ ..+.|..++.++...++++
T Consensus 161 ~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~ 190 (585)
T PRK14950 161 HKVPATILS--RC-QRFDFHRHSVADMAAHLRK 190 (585)
T ss_pred hhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHH
Confidence 566677776 76 4589999999988877654
No 145
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.14 E-value=3.8e-10 Score=100.74 Aligned_cols=119 Identities=15% Similarity=0.192 Sum_probs=81.8
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEeecCCCCChhHHHHHHHhc------
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFD------------------------VCDLELTTLRDNTKLRNVLIAT------ 80 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~------------------------~~~i~~~~~~~~~~l~~~~~~~------ 80 (192)
+..+|||||+|+|||++|+++|+.+... ++.++...-..-+.+++.....
T Consensus 38 ~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~ 117 (563)
T PRK06647 38 ANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPAS 117 (563)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhc
Confidence 3469999999999999999999987532 3333332222234555544322
Q ss_pred CCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---
Q 040463 81 ENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT--- 157 (192)
Q Consensus 81 ~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t--- 157 (192)
.+.-|++|||+|.+.. ..++.|+..++..+.. ..+|++|
T Consensus 118 ~~~KVvIIDEa~~Ls~------------------------------~a~naLLK~LEepp~~--------~vfI~~tte~ 159 (563)
T PRK06647 118 SRYRVYIIDEVHMLSN------------------------------SAFNALLKTIEEPPPY--------IVFIFATTEV 159 (563)
T ss_pred CCCEEEEEEChhhcCH------------------------------HHHHHHHHhhccCCCC--------EEEEEecCCh
Confidence 2567999999999743 3567788887765432 2344444
Q ss_pred CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 158 DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 158 ~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
..+.+.+++ |+. .++|..++.++..++++.
T Consensus 160 ~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~ 189 (563)
T PRK06647 160 HKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKK 189 (563)
T ss_pred HHhHHHHHH--hce-EEEecCCCHHHHHHHHHH
Confidence 678888888 874 589999999998877654
No 146
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.14 E-value=2.2e-10 Score=96.19 Aligned_cols=124 Identities=16% Similarity=0.164 Sum_probs=77.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhC-------CcE--EEeecC---------C-------------------CCChhHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLN-------FDV--CDLELT---------T-------------------LRDNTKLR 74 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~-------~~~--~~i~~~---------~-------------------~~~~~~l~ 74 (192)
.++||+|+||||||+++++++..+. .++ ..+.+. . +.+...+.
T Consensus 30 ~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~ 109 (334)
T PRK13407 30 GGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIE 109 (334)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCcccccCCccccCCCCCCcceeecchhhh
Confidence 4699999999999999999999882 211 100000 0 00111122
Q ss_pred HHHHhc-----------CCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCcc---
Q 040463 75 NVLIAT-----------ENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVC--- 140 (192)
Q Consensus 75 ~~~~~~-----------~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--- 140 (192)
..+... +..++||+||++.+.. ..+..|+..|+.-.
T Consensus 110 ~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~------------------------------~~q~~Lle~mee~~v~v 159 (334)
T PRK13407 110 RALTRGEKAFEPGLLARANRGYLYIDEVNLLED------------------------------HIVDLLLDVAQSGENVV 159 (334)
T ss_pred hhhhcCCeeecCCceEEcCCCeEEecChHhCCH------------------------------HHHHHHHHHHHcCCeEE
Confidence 221111 1347999999999854 56677777775322
Q ss_pred ccccccCC---CcceEEEEe------CCccccccCCCcceeEEEecCCCH-HHHHHHHHh
Q 040463 141 RAVEMRGS---QYSQLIIKT------DLTLNLLLRPGCMDMHIHMSYCTP-CGLKMLASN 190 (192)
Q Consensus 141 ~~~~~~~~---~~~~iiv~t------~~l~~~l~~~~rf~~~i~~~~p~~-~~r~~i~~~ 190 (192)
... |. -..++++++ ..++++++. ||...+.+++|.. ++|.+|+++
T Consensus 160 ~r~---G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~ 214 (334)
T PRK13407 160 ERE---GLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRR 214 (334)
T ss_pred EEC---CeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 000 00 023455555 357888888 9999999999988 888888865
No 147
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.13 E-value=7.7e-10 Score=102.98 Aligned_cols=126 Identities=20% Similarity=0.241 Sum_probs=83.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCChhH-------------------HHHHHHhcCCCeEEEEeC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDNTK-------------------LRNVLIATENKSILAVED 90 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~~~-------------------l~~~~~~~~~~~Il~lDe 90 (192)
.+||+||+|||||++|+++|+.+ +.+++.++++.+..... +...+.. ...+|++|||
T Consensus 541 ~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~-~p~~VvllDe 619 (821)
T CHL00095 541 SFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRK-KPYTVVLFDE 619 (821)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHh-CCCeEEEECC
Confidence 48899999999999999999987 35688888776643222 2222222 1348999999
Q ss_pred CCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCcccccc-ccCCC-cceEEEEe-----C-----
Q 040463 91 IDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVE-MRGSQ-YSQLIIKT-----D----- 158 (192)
Q Consensus 91 id~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~-~~~~~-~~~iiv~t-----~----- 158 (192)
+|...+ ...+.|+..++.-.-.+. -+..+ ...++|+| .
T Consensus 620 ieka~~------------------------------~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~ 669 (821)
T CHL00095 620 IEKAHP------------------------------DIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETN 669 (821)
T ss_pred hhhCCH------------------------------HHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhh
Confidence 999754 466777777765321110 00000 23466666 1
Q ss_pred -------------------------------CccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 159 -------------------------------LTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 159 -------------------------------~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
.+.|+++. |++..|.|.+++.++..+|++..
T Consensus 670 ~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~ 731 (821)
T CHL00095 670 SGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIM 731 (821)
T ss_pred ccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHH
Confidence 01234555 89999999999999999998764
No 148
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.13 E-value=8.5e-10 Score=102.93 Aligned_cols=127 Identities=13% Similarity=0.234 Sum_probs=83.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCChhHHHHHH---------------H---hcCCCeEEEEeCC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDNTKLRNVL---------------I---ATENKSILAVEDI 91 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~~~l~~~~---------------~---~~~~~~Il~lDei 91 (192)
.++|+||+|||||++|+++|+.+ +.+++.++++.+.........+ . .....++|+|||+
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEi 679 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEV 679 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeeh
Confidence 48899999999999999999987 4568888887764322222111 1 1113489999999
Q ss_pred CccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccC--CC-cceEEEEeCC---------
Q 040463 92 DCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRG--SQ-YSQLIIKTDL--------- 159 (192)
Q Consensus 92 d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~--~~-~~~iiv~t~~--------- 159 (192)
+.+.+ ...+.|+..++.-.-.+ ..| .+ ...++|+|..
T Consensus 680 eka~~------------------------------~v~~~Ll~ile~g~l~d-~~gr~vd~rn~iiI~TSN~g~~~~~~~ 728 (857)
T PRK10865 680 EKAHP------------------------------DVFNILLQVLDDGRLTD-GQGRTVDFRNTVVIMTSNLGSDLIQER 728 (857)
T ss_pred hhCCH------------------------------HHHHHHHHHHhhCceec-CCceEEeecccEEEEeCCcchHHHHHh
Confidence 98754 46677777775422100 000 00 2235666611
Q ss_pred --------------------ccccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 160 --------------------TLNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 160 --------------------l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
+.|+|+. |++..+.|.+++.+...+|++.+|
T Consensus 729 ~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L 779 (857)
T PRK10865 729 FGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQL 779 (857)
T ss_pred ccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHH
Confidence 2245666 899999999999999999987653
No 149
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.12 E-value=1.2e-09 Score=98.55 Aligned_cols=128 Identities=17% Similarity=0.230 Sum_probs=79.0
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEeecCCCCC-hhHH----------------HHHHHh---
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANYL----------NFDVCDLELTTLRD-NTKL----------------RNVLIA--- 79 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~~----------~~~~~~i~~~~~~~-~~~l----------------~~~~~~--- 79 (192)
.+..++|+||||||||++++.+++.. +.+++.+++..+.. ...+ ...+..
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl 253 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGV 253 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCC
Confidence 34569999999999999999998765 34678888766521 1111 011111
Q ss_pred ---------cCCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCcc---------c
Q 040463 80 ---------TENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVC---------R 141 (192)
Q Consensus 80 ---------~~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~ 141 (192)
...+++|||||++.+.. .....++..++.-. .
T Consensus 254 ~~~~~g~v~~asgGvL~LDEi~~Ld~------------------------------~~Q~~Ll~~Le~~~v~~~~~~~~~ 303 (615)
T TIGR02903 254 PEPKTGLVTDAHGGVLFIDEIGELDP------------------------------LLQNKLLKVLEDKRVEFSSSYYDP 303 (615)
T ss_pred CchhcCchhhcCCCeEEEeccccCCH------------------------------HHHHHHHHHHhhCeEEeecceecc
Confidence 11467999999998754 23344444443210 0
Q ss_pred ccc----------ccCCCcceEEEE--e----CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 142 AVE----------MRGSQYSQLIIK--T----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 142 ~~~----------~~~~~~~~iiv~--t----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
... ..+ ....++++ | ..+++++++ ||. .+.+++++.+++.+|++++
T Consensus 304 ~~~~~~~~ik~~~~~~-~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il~~~ 365 (615)
T TIGR02903 304 DDPNVPKYIKKLFEEG-APADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIVLNA 365 (615)
T ss_pred CCcccchhhhhhcccC-ccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHHHHH
Confidence 000 000 01223433 2 467888888 886 5789999999999999865
No 150
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.10 E-value=1.3e-09 Score=101.84 Aligned_cols=125 Identities=14% Similarity=0.217 Sum_probs=84.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCChhHHH-------------------HHHHhcCCCeEEEEeC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDNTKLR-------------------NVLIATENKSILAVED 90 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~~~l~-------------------~~~~~~~~~~Il~lDe 90 (192)
.++|+||+|||||++|+++|..+ +.+++.++++.+....... ..+.. ...+||+|||
T Consensus 597 ~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~-~p~~vlllDe 675 (852)
T TIGR03346 597 SFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRR-KPYSVVLFDE 675 (852)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHc-CCCcEEEEec
Confidence 48899999999999999999987 4678888887764422221 12221 2347999999
Q ss_pred CCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccC--CC-cceEEEEe-----C---C
Q 040463 91 IDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRG--SQ-YSQLIIKT-----D---L 159 (192)
Q Consensus 91 id~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~--~~-~~~iiv~t-----~---~ 159 (192)
++.+.+ .+.+.|+..++.-.-.+. .| .+ ...+||+| + .
T Consensus 676 ieka~~------------------------------~v~~~Ll~~l~~g~l~d~-~g~~vd~rn~iiI~TSn~g~~~~~~ 724 (852)
T TIGR03346 676 VEKAHP------------------------------DVFNVLLQVLDDGRLTDG-QGRTVDFRNTVIIMTSNLGSQFIQE 724 (852)
T ss_pred cccCCH------------------------------HHHHHHHHHHhcCceecC-CCeEEecCCcEEEEeCCcchHhHhh
Confidence 998754 567778887754321110 00 00 23466677 1 1
Q ss_pred ---------------------ccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 160 ---------------------TLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 160 ---------------------l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
+.|.|+. |++..+.|.+++.+...+|+..+
T Consensus 725 ~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~ 775 (852)
T TIGR03346 725 LAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQ 775 (852)
T ss_pred hcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHH
Confidence 1244555 89999999999999999998764
No 151
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.10 E-value=1.3e-09 Score=91.52 Aligned_cols=119 Identities=15% Similarity=0.150 Sum_probs=85.2
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCC------------------------cEEEeecC---CCCChhHHHHHHHhcC--
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNF------------------------DVCDLELT---TLRDNTKLRNVLIATE-- 81 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~------------------------~~~~i~~~---~~~~~~~l~~~~~~~~-- 81 (192)
+..+||+||+|+||+++|+++|+.+.. ++..+... .-.+-++++++.....
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~ 101 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQT 101 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhc
Confidence 347999999999999999999998743 23333322 1123456666655443
Q ss_pred ----CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe
Q 040463 82 ----NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT 157 (192)
Q Consensus 82 ----~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t 157 (192)
..-|++||++|.+-. ...+.|+..++.-..+ ..+|++|
T Consensus 102 ~~~~~~kv~iI~~a~~m~~------------------------------~aaNaLLK~LEEPp~~--------~~fiL~t 143 (328)
T PRK05707 102 AQLGGRKVVLIEPAEAMNR------------------------------NAANALLKSLEEPSGD--------TVLLLIS 143 (328)
T ss_pred cccCCCeEEEECChhhCCH------------------------------HHHHHHHHHHhCCCCC--------eEEEEEE
Confidence 346788999999844 5678899988886543 2455555
Q ss_pred ---CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 158 ---DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 158 ---~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
+.+.|.+++ |+. .+.|++|+.++..+.+..
T Consensus 144 ~~~~~ll~TI~S--Rc~-~~~~~~~~~~~~~~~L~~ 176 (328)
T PRK05707 144 HQPSRLLPTIKS--RCQ-QQACPLPSNEESLQWLQQ 176 (328)
T ss_pred CChhhCcHHHHh--hce-eeeCCCcCHHHHHHHHHH
Confidence 788999999 984 499999999988766643
No 152
>PRK08116 hypothetical protein; Validated
Probab=99.10 E-value=9.1e-10 Score=89.96 Aligned_cols=63 Identities=25% Similarity=0.394 Sum_probs=45.5
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCCh----------hHHHHHHHhcCCCeEEEEeCCCc
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDN----------TKLRNVLIATENKSILAVEDIDC 93 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~----------~~l~~~~~~~~~~~Il~lDeid~ 93 (192)
+.+++|||++|||||+|+.++++++ +.+++.++...+... ......+.......+|+|||+..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~ 189 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGA 189 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccC
Confidence 3479999999999999999999986 677777776554210 11223344445567999999865
No 153
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.09 E-value=9e-11 Score=84.97 Aligned_cols=105 Identities=19% Similarity=0.171 Sum_probs=57.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHHHH--HHh-------cCC---CeEEEEeCCCccccccCcc
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRNV--LIA-------TEN---KSILAVEDIDCSINLQGRH 101 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~~~--~~~-------~~~---~~Il~lDeid~l~~~~~~~ 101 (192)
+||+|+||+|||++|+++|+.++..+..+.++.-...+++.-. +.. ... ..|+++||++...+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrapp----- 76 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAPP----- 76 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-H-----
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCCH-----
Confidence 7999999999999999999999999999988643333333211 000 011 37999999999755
Q ss_pred ccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCcccccc--ccCCCcceEEEEe---------CCccccccCCCcc
Q 040463 102 SQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVE--MRGSQYSQLIIKT---------DLTLNLLLRPGCM 170 (192)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~--~~~~~~~~iiv~t---------~~l~~~l~~~~rf 170 (192)
++++.+++.|..-.-..+ .-.-+...+|++| ..+++++++ ||
T Consensus 77 -------------------------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 77 -------------------------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp -------------------------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred -------------------------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 678888888753321100 0000123456666 367788887 77
No 154
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.09 E-value=9.2e-11 Score=89.70 Aligned_cols=65 Identities=18% Similarity=0.399 Sum_probs=51.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCC----cEEEeecCCCCC----hhHHHHHHHhcC------CCeEEEEeCCCcccc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNF----DVCDLELTTLRD----NTKLRNVLIATE------NKSILAVEDIDCSIN 96 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~----~~~~i~~~~~~~----~~~l~~~~~~~~------~~~Il~lDeid~l~~ 96 (192)
.+++|+||+|||||.+++++|+.+.. +++.++++.+.. ...+...+.... ...||+|||||+..+
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~ 82 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHP 82 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhccc
Confidence 46899999999999999999999996 999999999887 333444444332 346999999999875
No 155
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.09 E-value=1.2e-09 Score=92.13 Aligned_cols=77 Identities=18% Similarity=0.196 Sum_probs=52.3
Q ss_pred CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccC---CCcceEEEEe-
Q 040463 82 NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRG---SQYSQLIIKT- 157 (192)
Q Consensus 82 ~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~---~~~~~iiv~t- 157 (192)
..++||+||++.+.+ ..+..|+..++.-....+-.| .-..++++++
T Consensus 144 ~~GiL~lDEInrL~~------------------------------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT 193 (350)
T CHL00081 144 NRGILYVDEVNLLDD------------------------------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGS 193 (350)
T ss_pred CCCEEEecChHhCCH------------------------------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEec
Confidence 468999999999865 456667777643110000000 0134566666
Q ss_pred -----CCccccccCCCcceeEEEecCCC-HHHHHHHHHh
Q 040463 158 -----DLTLNLLLRPGCMDMHIHMSYCT-PCGLKMLASN 190 (192)
Q Consensus 158 -----~~l~~~l~~~~rf~~~i~~~~p~-~~~r~~i~~~ 190 (192)
..++++++. ||...+.+.+|+ .+.+.+|+++
T Consensus 194 ~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~~il~~ 230 (350)
T CHL00081 194 GNPEEGELRPQLLD--RFGMHAEIRTVKDPELRVKIVEQ 230 (350)
T ss_pred cCcccCCCCHHHHH--HhCceeecCCCCChHHHHHHHHh
Confidence 368888888 999999999998 5999888865
No 156
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=9.5e-10 Score=93.56 Aligned_cols=132 Identities=18% Similarity=0.265 Sum_probs=86.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC--------hhHHHHHHHhcC------CCeEEEEeCCCccccc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD--------NTKLRNVLIATE------NKSILAVEDIDCSINL 97 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~--------~~~l~~~~~~~~------~~~Il~lDeid~l~~~ 97 (192)
.+|||.||+|+|||.|++.+|+.++.|+...+|+++.. ++-+..++..+. +.+|+||||+|.+..
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~- 305 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK- 305 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc-
Confidence 47999999999999999999999999999999999853 334455555543 679999999999974
Q ss_pred cCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCcccccc---c-cCCCc-------ceEEEEe----CCccc
Q 040463 98 QGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVE---M-RGSQY-------SQLIIKT----DLTLN 162 (192)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~---~-~~~~~-------~~iiv~t----~~l~~ 162 (192)
...+. ...+ +-...-+...||..+++..-+.- + +..+. ..|+|++ ..||.
T Consensus 306 -~~~~i-~~~R-------------DVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk 370 (564)
T KOG0745|consen 306 -KAESI-HTSR-------------DVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDK 370 (564)
T ss_pred -cCccc-cccc-------------cccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHH
Confidence 22211 1111 11122456677777765543220 0 01111 2355555 67888
Q ss_pred cccCCCcc-eeEEEecCCCH
Q 040463 163 LLLRPGCM-DMHIHMSYCTP 181 (192)
Q Consensus 163 ~l~~~~rf-~~~i~~~~p~~ 181 (192)
-+-+ |. +..+-|..|+-
T Consensus 371 ~I~r--R~~d~slGFg~~s~ 388 (564)
T KOG0745|consen 371 IISR--RLDDKSLGFGAPSS 388 (564)
T ss_pred HHHH--hhcchhcccCCCCC
Confidence 7777 65 34577777744
No 157
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.2e-09 Score=96.33 Aligned_cols=145 Identities=25% Similarity=0.355 Sum_probs=109.9
Q ss_pred HHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC------hhHHHHHHHhcC--CCeEEEE
Q 040463 17 VKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD------NTKLRNVLIATE--NKSILAV 88 (192)
Q Consensus 17 l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~------~~~l~~~~~~~~--~~~Il~l 88 (192)
+.++..++..+..++.+++++||||||||++++++++. +.+...++...... ..++...+..+. .|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 34677788889999999999999999999999999998 55444444444332 345666666554 5799999
Q ss_pred eCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe-----CCcccc
Q 040463 89 EDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-----DLTLNL 163 (192)
Q Consensus 89 Deid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-----~~l~~~ 163 (192)
||+|.+.+ .+.... ......+...++..++++. . .. ++++. ..++++
T Consensus 83 d~~~~~~~--~~~~~~-----------------~~~~~~v~~~l~~~~d~~~--~------~~-v~~~~~~~~~~~~~~a 134 (494)
T COG0464 83 DEIDALAP--KRSSDQ-----------------GEVERRVVAQLLALMDGLK--R------GQ-VIVIGATNRPDGLDPA 134 (494)
T ss_pred chhhhccc--Cccccc-----------------cchhhHHHHHHHHhccccc--C------Cc-eEEEeecCCccccChh
Confidence 99999987 444311 2244567888888888886 2 23 44443 789999
Q ss_pred ccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 164 LLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 164 l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
+++|+||+..+.++.|+...+.++++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~ei~~~ 161 (494)
T COG0464 135 KRRPGRFDREIEVNLPDEAGRLEILQI 161 (494)
T ss_pred HhCccccceeeecCCCCHHHHHHHHHH
Confidence 999999999999999999999887753
No 158
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.08 E-value=1.4e-09 Score=98.11 Aligned_cols=119 Identities=13% Similarity=0.249 Sum_probs=85.7
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhC-------------------------CcEEEeecCCCCChhHHHHHHHhcC----
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLN-------------------------FDVCDLELTTLRDNTKLRNVLIATE---- 81 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~-------------------------~~~~~i~~~~~~~~~~l~~~~~~~~---- 81 (192)
+..+|||||+|+|||++++.+|+.+. ..+..++.....+.+.+++.+..+.
T Consensus 39 ~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~ 118 (614)
T PRK14971 39 AHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQ 118 (614)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcc
Confidence 34699999999999999999999874 2344444443333456666665443
Q ss_pred --CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe--
Q 040463 82 --NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-- 157 (192)
Q Consensus 82 --~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-- 157 (192)
..-|++|||+|.+.. ...+.|+..++....+. .+|++|
T Consensus 119 ~~~~KVvIIdea~~Ls~------------------------------~a~naLLK~LEepp~~t--------ifIL~tt~ 160 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQ------------------------------AAFNAFLKTLEEPPSYA--------IFILATTE 160 (614)
T ss_pred cCCcEEEEEECcccCCH------------------------------HHHHHHHHHHhCCCCCe--------EEEEEeCC
Confidence 346999999999843 35678888888765432 455555
Q ss_pred -CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 158 -DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 158 -~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
..+-+.|++ |+ ..++|.+++.++....++.
T Consensus 161 ~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ 191 (614)
T PRK14971 161 KHKILPTILS--RC-QIFDFNRIQVADIVNHLQY 191 (614)
T ss_pred chhchHHHHh--hh-heeecCCCCHHHHHHHHHH
Confidence 778888888 77 5599999999988777654
No 159
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.05 E-value=4.4e-09 Score=79.69 Aligned_cols=109 Identities=16% Similarity=0.184 Sum_probs=77.0
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh-----------------------CCcEEEeecCCC---CChhHHHHHHHhcC---
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL-----------------------NFDVCDLELTTL---RDNTKLRNVLIATE--- 81 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~-----------------------~~~~~~i~~~~~---~~~~~l~~~~~~~~--- 81 (192)
+..+||+||+|+||+++|.++|+.+ ..++..+..... ...++++++.....
T Consensus 19 ~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~ 98 (162)
T PF13177_consen 19 PHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSLSP 98 (162)
T ss_dssp -SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS-
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHHHH
Confidence 3479999999999999999999976 123555555443 24567777766664
Q ss_pred ---CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe-
Q 040463 82 ---NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT- 157 (192)
Q Consensus 82 ---~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t- 157 (192)
..-|++|||+|.+-. ...+.|+..|+.-..+. .+|++|
T Consensus 99 ~~~~~KviiI~~ad~l~~------------------------------~a~NaLLK~LEepp~~~--------~fiL~t~ 140 (162)
T PF13177_consen 99 SEGKYKVIIIDEADKLTE------------------------------EAQNALLKTLEEPPENT--------YFILITN 140 (162)
T ss_dssp TTSSSEEEEEETGGGS-H------------------------------HHHHHHHHHHHSTTTTE--------EEEEEES
T ss_pred hcCCceEEEeehHhhhhH------------------------------HHHHHHHHHhcCCCCCE--------EEEEEEC
Confidence 357999999999854 67799999999887543 566666
Q ss_pred --CCccccccCCCcceeEEEecCCC
Q 040463 158 --DLTLNLLLRPGCMDMHIHMSYCT 180 (192)
Q Consensus 158 --~~l~~~l~~~~rf~~~i~~~~p~ 180 (192)
+.+.+.+++ |+ ..+.|++++
T Consensus 141 ~~~~il~TI~S--Rc-~~i~~~~ls 162 (162)
T PF13177_consen 141 NPSKILPTIRS--RC-QVIRFRPLS 162 (162)
T ss_dssp -GGGS-HHHHT--TS-EEEEE----
T ss_pred ChHHChHHHHh--hc-eEEecCCCC
Confidence 788899998 87 457777653
No 160
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.05 E-value=4.6e-10 Score=95.86 Aligned_cols=121 Identities=12% Similarity=0.126 Sum_probs=83.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEeecCCCCCh------hHHHHHHHhcCCCeEEEEeCCCccccccCcc
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLN-----FDVCDLELTTLRDN------TKLRNVLIATENKSILAVEDIDCSINLQGRH 101 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~-----~~~~~i~~~~~~~~------~~l~~~~~~~~~~~Il~lDeid~l~~~~~~~ 101 (192)
-++||||+|+|||+|++|++++.. ..++++....+... ..-...|++.-.-.+++|||++.+.+
T Consensus 115 plfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~g----- 189 (408)
T COG0593 115 PLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLAG----- 189 (408)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhhccCeeeechHhHhcC-----
Confidence 499999999999999999999873 33555554443210 00111122211346999999999875
Q ss_pred ccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe-------CCccccccCCCcce--e
Q 040463 102 SQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-------DLTLNLLLRPGCMD--M 172 (192)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-------~~l~~~l~~~~rf~--~ 172 (192)
+.....++...++.+..+. .+|++.+ ..+.+.|.+ ||. .
T Consensus 190 -----------------------k~~~qeefFh~FN~l~~~~-------kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl 237 (408)
T COG0593 190 -----------------------KERTQEEFFHTFNALLENG-------KQIVLTSDRPPKELNGLEDRLRS--RLEWGL 237 (408)
T ss_pred -----------------------ChhHHHHHHHHHHHHHhcC-------CEEEEEcCCCchhhccccHHHHH--HHhcee
Confidence 2244678888888887653 2455554 456788888 774 4
Q ss_pred EEEecCCCHHHHHHHHHh
Q 040463 173 HIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 173 ~i~~~~p~~~~r~~i~~~ 190 (192)
.+.+.+|+.+.|..|++.
T Consensus 238 ~~~I~~Pd~e~r~aiL~k 255 (408)
T COG0593 238 VVEIEPPDDETRLAILRK 255 (408)
T ss_pred EEeeCCCCHHHHHHHHHH
Confidence 579999999999999875
No 161
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.04 E-value=7.2e-10 Score=97.22 Aligned_cols=119 Identities=14% Similarity=0.258 Sum_probs=88.8
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEeecCCCCChhHHHHHHHhcC------
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFD------------------------VCDLELTTLRDNTKLRNVLIATE------ 81 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~------------------------~~~i~~~~~~~~~~l~~~~~~~~------ 81 (192)
.+.+|.||.||||||++|-+|+.+++. ++.++..+-.+-++++++..+..
T Consensus 39 hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ 118 (515)
T COG2812 39 HAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEG 118 (515)
T ss_pred hhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccc
Confidence 379999999999999999999988543 22222222233456666666653
Q ss_pred CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---C
Q 040463 82 NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---D 158 (192)
Q Consensus 82 ~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~ 158 (192)
+.-|++|||+|.+.. ..++.||..++.-.++. .+|++| .
T Consensus 119 ryKVyiIDEvHMLS~------------------------------~afNALLKTLEEPP~hV--------~FIlATTe~~ 160 (515)
T COG2812 119 RYKVYIIDEVHMLSK------------------------------QAFNALLKTLEEPPSHV--------KFILATTEPQ 160 (515)
T ss_pred cceEEEEecHHhhhH------------------------------HHHHHHhcccccCccCe--------EEEEecCCcC
Confidence 568999999999865 57889988887776543 466666 8
Q ss_pred CccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 159 LTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 159 ~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
++++.+++ |+ .+..|...+.++....++..
T Consensus 161 Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i 190 (515)
T COG2812 161 KIPNTILS--RC-QRFDFKRLDLEEIAKHLAAI 190 (515)
T ss_pred cCchhhhh--cc-ccccccCCCHHHHHHHHHHH
Confidence 99999999 98 55899999998887766553
No 162
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.03 E-value=3.1e-09 Score=76.20 Aligned_cols=65 Identities=23% Similarity=0.392 Sum_probs=47.7
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCc---EEEeecCCCCC--------------------hhHHHHHHHhcC--CCeEE
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFD---VCDLELTTLRD--------------------NTKLRNVLIATE--NKSIL 86 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~---~~~i~~~~~~~--------------------~~~l~~~~~~~~--~~~Il 86 (192)
..++|+||||||||++++.+|..+... ++.+++..... .......+..+. .+.++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 468999999999999999999999775 77777765422 112233333332 35999
Q ss_pred EEeCCCcccc
Q 040463 87 AVEDIDCSIN 96 (192)
Q Consensus 87 ~lDeid~l~~ 96 (192)
++||++.+..
T Consensus 83 iiDei~~~~~ 92 (148)
T smart00382 83 ILDEITSLLD 92 (148)
T ss_pred EEECCcccCC
Confidence 9999999865
No 163
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=1.2e-08 Score=86.47 Aligned_cols=118 Identities=17% Similarity=0.109 Sum_probs=80.2
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCc-------E-----------------------EEeecC---------CCCChhH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFD-------V-----------------------CDLELT---------TLRDNTK 72 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~-------~-----------------------~~i~~~---------~~~~~~~ 72 (192)
..+||+||+|+|||++++.+|+.+..+ . ..+... ...+-++
T Consensus 46 ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~ 125 (351)
T PRK09112 46 HALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDE 125 (351)
T ss_pred eeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHH
Confidence 379999999999999999999987441 0 111100 0001233
Q ss_pred HHHHHHhc------CCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCcccccccc
Q 040463 73 LRNVLIAT------ENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMR 146 (192)
Q Consensus 73 l~~~~~~~------~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 146 (192)
++++.... .+.-|++|||+|.+-. ...+.|+..++....
T Consensus 126 iR~l~~~l~~~~~~g~~rVviIDeAd~l~~------------------------------~aanaLLk~LEEpp~----- 170 (351)
T PRK09112 126 IRRVGHFLSQTSGDGNWRIVIIDPADDMNR------------------------------NAANAILKTLEEPPA----- 170 (351)
T ss_pred HHHHHHHhhhccccCCceEEEEEchhhcCH------------------------------HHHHHHHHHHhcCCC-----
Confidence 33332222 1457999999999843 456778888877543
Q ss_pred CCCcceEEEEe---CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 147 GSQYSQLIIKT---DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 147 ~~~~~~iiv~t---~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
+..+++++ +.+.+.+++ |+ ..+.|++|+.++..+++++
T Consensus 171 ---~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~ 211 (351)
T PRK09112 171 ---RALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSH 211 (351)
T ss_pred ---CceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHH
Confidence 23455666 677888888 88 6899999999999988865
No 164
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.02 E-value=8.8e-09 Score=86.75 Aligned_cols=120 Identities=13% Similarity=0.094 Sum_probs=84.8
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhCCc-------------------------EEEeecC-------------------
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANYLNFD-------------------------VCDLELT------------------- 65 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~~~~~-------------------------~~~i~~~------------------- 65 (192)
.+.++||+||+|+||+++|+++|+.+... +..+...
T Consensus 20 l~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~ 99 (342)
T PRK06964 20 LPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADAD 99 (342)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhh
Confidence 34589999999999999999999987332 1112111
Q ss_pred ----------CCCChhHHHHHHHhcC------CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchH
Q 040463 66 ----------TLRDNTKLRNVLIATE------NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTL 129 (192)
Q Consensus 66 ----------~~~~~~~l~~~~~~~~------~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (192)
....-+++++...... ..-|++||++|.+-. ...
T Consensus 100 ~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~------------------------------~Aa 149 (342)
T PRK06964 100 EGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV------------------------------AAA 149 (342)
T ss_pred cccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH------------------------------HHH
Confidence 0112345555554442 345899999999744 567
Q ss_pred HHHHHhhcCccccccccCCCcceEEEEe---CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 130 SGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 130 ~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
|.||..++.-..+ ..+|++| +.+.|.+++ |+ ..+.|++|+.++..+.+..
T Consensus 150 NaLLKtLEEPp~~--------t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 150 NALLKTLEEPPPG--------TVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred HHHHHHhcCCCcC--------cEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHH
Confidence 8999999876543 2455555 789999999 99 6799999999999877653
No 165
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.02 E-value=2.7e-09 Score=88.52 Aligned_cols=114 Identities=18% Similarity=0.243 Sum_probs=83.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC------------------------CcEEEeecCCCCC----hhHHHHHHHhcC---
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLN------------------------FDVCDLELTTLRD----NTKLRNVLIATE--- 81 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~------------------------~~~~~i~~~~~~~----~~~l~~~~~~~~--- 81 (192)
.+||+||||+|||++|.++|+.+. -.++.++.+.... .+.++++.....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~ 105 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESP 105 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhccCC
Confidence 699999999999999999999886 4677888877665 334554444432
Q ss_pred ---CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe-
Q 040463 82 ---NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT- 157 (192)
Q Consensus 82 ---~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t- 157 (192)
..-|++|||+|.+-. ...+.++..+..-..+ .++++++
T Consensus 106 ~~~~~kviiidead~mt~------------------------------~A~nallk~lEep~~~--------~~~il~~n 147 (325)
T COG0470 106 LEGGYKVVIIDEADKLTE------------------------------DAANALLKTLEEPPKN--------TRFILITN 147 (325)
T ss_pred CCCCceEEEeCcHHHHhH------------------------------HHHHHHHHHhccCCCC--------eEEEEEcC
Confidence 358999999999854 4567888887776553 3566777
Q ss_pred --CCccccccCCCcceeEEEecCCCHHHHHHH
Q 040463 158 --DLTLNLLLRPGCMDMHIHMSYCTPCGLKML 187 (192)
Q Consensus 158 --~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i 187 (192)
..+-+-+++ |+ ..++|++|+...+...
T Consensus 148 ~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~ 176 (325)
T COG0470 148 DPSKILPTIRS--RC-QRIRFKPPSRLEAIAW 176 (325)
T ss_pred Chhhccchhhh--cc-eeeecCCchHHHHHHH
Confidence 677777887 77 5688888776655543
No 166
>PRK08181 transposase; Validated
Probab=99.02 E-value=2e-09 Score=87.93 Aligned_cols=65 Identities=26% Similarity=0.389 Sum_probs=47.8
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCC-------hhHHHHHHHhcCCCeEEEEeCCCccc
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRD-------NTKLRNVLIATENKSILAVEDIDCSI 95 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~-------~~~l~~~~~~~~~~~Il~lDeid~l~ 95 (192)
..+++|+||||||||+|+.++++++ |..+++++...+.. ...+.+.+....++.+|+|||+....
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVT 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEecccccc
Confidence 3579999999999999999999865 66677766654432 11233455555678999999998864
No 167
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=2.4e-09 Score=97.53 Aligned_cols=130 Identities=18% Similarity=0.208 Sum_probs=88.3
Q ss_pred hcCCCCccEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEeecCCCCC--------hhHHHHHHHhcC--CCeE
Q 040463 26 VGRAWKRGYLLYSPPRTGKSSLTAAMANYL----------NFDVCDLELTTLRD--------NTKLRNVLIATE--NKSI 85 (192)
Q Consensus 26 ~~~~~~~~ilL~GppGtGKt~l~~~ia~~~----------~~~~~~i~~~~~~~--------~~~l~~~~~~~~--~~~I 85 (192)
+.+..+++-+|+|+||+|||.++..+|... +..++.++...+.. ++.+..++.... .+.|
T Consensus 186 L~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vI 265 (786)
T COG0542 186 LSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVI 265 (786)
T ss_pred HhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeE
Confidence 344556789999999999999999999976 56677777777643 345666665553 3899
Q ss_pred EEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe--------
Q 040463 86 LAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-------- 157 (192)
Q Consensus 86 l~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-------- 157 (192)
|||||+|.+.+.....+. ..- ..+.+...... | .-++|-+|
T Consensus 266 LFIDEiHtiVGAG~~~G~----------------------a~D---AaNiLKPaLAR----G--eL~~IGATT~~EYRk~ 314 (786)
T COG0542 266 LFIDEIHTIVGAGATEGG----------------------AMD---AANLLKPALAR----G--ELRCIGATTLDEYRKY 314 (786)
T ss_pred EEEechhhhcCCCccccc----------------------ccc---hhhhhHHHHhc----C--CeEEEEeccHHHHHHH
Confidence 999999999872221111 111 11222222221 2 33466565
Q ss_pred CCccccccCCCcceeEEEecCCCHHHHHHHHH
Q 040463 158 DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLAS 189 (192)
Q Consensus 158 ~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~ 189 (192)
-.-|++|.| || ..|.+..|+.++-..|++
T Consensus 315 iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILr 343 (786)
T COG0542 315 IEKDAALER--RF-QKVLVDEPSVEDTIAILR 343 (786)
T ss_pred hhhchHHHh--cC-ceeeCCCCCHHHHHHHHH
Confidence 133899999 99 569999999999998875
No 168
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.02 E-value=2.6e-09 Score=89.71 Aligned_cols=64 Identities=17% Similarity=0.223 Sum_probs=48.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhC---CcEEEeecCCCCChhHHHHHHH------------------hcCCCeEEEEeC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLN---FDVCDLELTTLRDNTKLRNVLI------------------ATENKSILAVED 90 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~---~~~~~i~~~~~~~~~~l~~~~~------------------~~~~~~Il~lDe 90 (192)
..|+|+|++||||+++|+++..... .+|+.++|..+.. +.+...++ ..+.++.|||||
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~-~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Lde 101 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSE-NLLDSELFGHEAGAFTGAQKRHQGRFERADGGTLFLDE 101 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCCh-HHHHHHHhccccccccCcccccCCchhhCCCCEEEeCC
Confidence 4699999999999999999987664 6899999998653 33333332 122578999999
Q ss_pred CCcccc
Q 040463 91 IDCSIN 96 (192)
Q Consensus 91 id~l~~ 96 (192)
++.+..
T Consensus 102 i~~L~~ 107 (329)
T TIGR02974 102 LATASL 107 (329)
T ss_pred hHhCCH
Confidence 999854
No 169
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.02 E-value=3.5e-10 Score=92.59 Aligned_cols=133 Identities=18% Similarity=0.274 Sum_probs=74.5
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCc---EEEeecCCCCChhHHHHHHHhc-------------CCCeEEEEeCCCcc
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFD---VCDLELTTLRDNTKLRNVLIAT-------------ENKSILAVEDIDCS 94 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~---~~~i~~~~~~~~~~l~~~~~~~-------------~~~~Il~lDeid~l 94 (192)
+..+||+||+|||||++++.+-+.+... ...++++...+...+++.+... ++..|+||||++..
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCC
Confidence 4579999999999999998877665432 3456776655555555444332 14689999999997
Q ss_pred ccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhh---cCccccccccCCCcceEEEEe--------CCcccc
Q 040463 95 INLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFI---DGVCRAVEMRGSQYSQLIIKT--------DLTLNL 163 (192)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l---~~~~~~~~~~~~~~~~iiv~t--------~~l~~~ 163 (192)
.. ++.+.+. ..+++..+ .++....+..+..-..+.+++ ..+++.
T Consensus 113 ~~--d~ygtq~-----------------------~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R 167 (272)
T PF12775_consen 113 QP--DKYGTQP-----------------------PIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPR 167 (272)
T ss_dssp -----TTS--H-----------------------HHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHH
T ss_pred CC--CCCCCcC-----------------------HHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChH
Confidence 65 3332211 22444332 344332211111112243334 357888
Q ss_pred ccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 164 LLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 164 l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
++| .| ..+.+++|+.++...|+..+
T Consensus 168 ~~r--~f-~i~~~~~p~~~sl~~If~~i 192 (272)
T PF12775_consen 168 FLR--HF-NILNIPYPSDESLNTIFSSI 192 (272)
T ss_dssp HHT--TE-EEEE----TCCHHHHHHHHH
T ss_pred Hhh--he-EEEEecCCChHHHHHHHHHH
Confidence 887 66 57999999999999988764
No 170
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.02 E-value=2.1e-09 Score=90.34 Aligned_cols=76 Identities=12% Similarity=0.083 Sum_probs=51.5
Q ss_pred CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCcc----ccccccCCCcceEEEEe
Q 040463 82 NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVC----RAVEMRGSQYSQLIIKT 157 (192)
Q Consensus 82 ~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~----~~~~~~~~~~~~iiv~t 157 (192)
.+++||+||++.+.. ..+..|+..|+.-. ..... ..-..++++++
T Consensus 131 ~~GvL~lDEi~~L~~------------------------------~~Q~~Ll~~l~~g~~~v~r~G~~-~~~~~r~ivia 179 (337)
T TIGR02030 131 NRGILYIDEVNLLED------------------------------HLVDVLLDVAASGWNVVEREGIS-IRHPARFVLVG 179 (337)
T ss_pred cCCEEEecChHhCCH------------------------------HHHHHHHHHHHhCCeEEEECCEE-EEcCCCEEEEe
Confidence 458999999999754 45667777764321 00000 00034566666
Q ss_pred ------CCccccccCCCcceeEEEecCCCH-HHHHHHHHh
Q 040463 158 ------DLTLNLLLRPGCMDMHIHMSYCTP-CGLKMLASN 190 (192)
Q Consensus 158 ------~~l~~~l~~~~rf~~~i~~~~p~~-~~r~~i~~~ 190 (192)
..++++++. ||...+.+++|+. ++|.+|+++
T Consensus 180 t~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eIL~~ 217 (337)
T TIGR02030 180 SGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEIVER 217 (337)
T ss_pred ccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHHHHh
Confidence 367888998 9999999999986 888888865
No 171
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=7.9e-09 Score=87.91 Aligned_cols=119 Identities=15% Similarity=0.180 Sum_probs=81.9
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCc----------------------------------EEEeecC--C-------C
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFD----------------------------------VCDLELT--T-------L 67 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~----------------------------------~~~i~~~--~-------~ 67 (192)
+..+||+||+|+||+++|.++|+.+-.. +..+... . .
T Consensus 41 ~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~ 120 (365)
T PRK07471 41 HHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTV 120 (365)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccCCCCeEEEeccccccccccccc
Confidence 3479999999999999999999987211 1111110 0 0
Q ss_pred CChhHHHHHHHhcC------CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccc
Q 040463 68 RDNTKLRNVLIATE------NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCR 141 (192)
Q Consensus 68 ~~~~~l~~~~~~~~------~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 141 (192)
..-++++++..... .+-|++|||+|.+-. ...+.|+..++....
T Consensus 121 I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~------------------------------~aanaLLK~LEepp~ 170 (365)
T PRK07471 121 ITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA------------------------------NAANALLKVLEEPPA 170 (365)
T ss_pred ccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH------------------------------HHHHHHHHHHhcCCC
Confidence 11244555444332 578999999998743 567888888877643
Q ss_pred cccccCCCcceEEEEe---CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 142 AVEMRGSQYSQLIIKT---DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 142 ~~~~~~~~~~~iiv~t---~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
+ ..+|++| +.+.+.+++ |+ ..+.|++|+.++..++++.
T Consensus 171 ~--------~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~ 211 (365)
T PRK07471 171 R--------SLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAA 211 (365)
T ss_pred C--------eEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHH
Confidence 2 2455555 677788887 87 5699999999999888765
No 172
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.3e-08 Score=84.40 Aligned_cols=38 Identities=18% Similarity=0.343 Sum_probs=34.9
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCC
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLR 68 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~ 68 (192)
|++||..||.|+|||-+||.+|+..+.||+-+.++.+.
T Consensus 50 PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfT 87 (444)
T COG1220 50 PKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFT 87 (444)
T ss_pred ccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeee
Confidence 56999999999999999999999999999998887774
No 173
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.96 E-value=1.5e-08 Score=85.22 Aligned_cols=39 Identities=28% Similarity=0.416 Sum_probs=29.8
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhC--CcEEEeecCCCC
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANYLN--FDVCDLELTTLR 68 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~~~--~~~~~i~~~~~~ 68 (192)
..+++||.||||||||.+|-++|+++| .||+.++.+.+.
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 346899999999999999999999996 567777666653
No 174
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=1e-08 Score=86.13 Aligned_cols=118 Identities=19% Similarity=0.193 Sum_probs=82.7
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCC------------------------cEEEeecCCC-CChhHHHHHHHhcC----
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNF------------------------DVCDLELTTL-RDNTKLRNVLIATE---- 81 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~------------------------~~~~i~~~~~-~~~~~l~~~~~~~~---- 81 (192)
+..+||+||+|+||+++|+++|+.+-. .+..+....- .+.+++++......
T Consensus 28 ~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~ 107 (329)
T PRK08058 28 SHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGV 107 (329)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCc
Confidence 346899999999999999999998632 1322322110 12345555554332
Q ss_pred --CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe--
Q 040463 82 --NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-- 157 (192)
Q Consensus 82 --~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-- 157 (192)
..-|++|||+|.+-. ...+.|+..++.-+.+. .+|++|
T Consensus 108 ~~~~kvviI~~a~~~~~------------------------------~a~NaLLK~LEEPp~~~--------~~Il~t~~ 149 (329)
T PRK08058 108 ESNKKVYIIEHADKMTA------------------------------SAANSLLKFLEEPSGGT--------TAILLTEN 149 (329)
T ss_pred ccCceEEEeehHhhhCH------------------------------HHHHHHHHHhcCCCCCc--------eEEEEeCC
Confidence 457999999998743 46688999988765432 455555
Q ss_pred -CCccccccCCCcceeEEEecCCCHHHHHHHHH
Q 040463 158 -DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLAS 189 (192)
Q Consensus 158 -~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~ 189 (192)
..+.+.+++ |+ ..++|++|+.++..+.++
T Consensus 150 ~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 150 KHQILPTILS--RC-QVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred hHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHH
Confidence 778889998 88 569999999998877664
No 175
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.95 E-value=2e-08 Score=86.84 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=23.8
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
+.+++|+||||||||++|+.+|..+.
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999999874
No 176
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.94 E-value=2.3e-09 Score=78.93 Aligned_cols=59 Identities=24% Similarity=0.279 Sum_probs=43.0
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCC---cEEEeecCCCCChhHHHHHHHhcCCCeEEEEeCCCcccc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNF---DVCDLELTTLRDNTKLRNVLIATENKSILAVEDIDCSIN 96 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~---~~~~i~~~~~~~~~~l~~~~~~~~~~~Il~lDeid~l~~ 96 (192)
..|+|+|++||||+++|+++....+. +++.+++.... .+.+..+ .++.|+|+|+|.+..
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----~~~l~~a-~~gtL~l~~i~~L~~ 83 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----AELLEQA-KGGTLYLKNIDRLSP 83 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----HHHHHHC-TTSEEEEECGCCS-H
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----HHHHHHc-CCCEEEECChHHCCH
Confidence 46999999999999999999997753 45555555533 3344443 788999999999865
No 177
>PRK12377 putative replication protein; Provisional
Probab=98.94 E-value=3.7e-09 Score=85.35 Aligned_cols=63 Identities=21% Similarity=0.310 Sum_probs=47.1
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCC--------hhHHHHHHHhcCCCeEEEEeCCCcc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRD--------NTKLRNVLIATENKSILAVEDIDCS 94 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~--------~~~l~~~~~~~~~~~Il~lDeid~l 94 (192)
.+++|+||||||||+|+.++|+++ +..+..++...+.. .......+.......+|+|||+...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~ 175 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQ 175 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 589999999999999999999987 56676666655432 1112345555567899999999775
No 178
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.94 E-value=3.5e-08 Score=82.28 Aligned_cols=119 Identities=12% Similarity=0.149 Sum_probs=82.7
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCC--------cEEEeec--CCCCChhHHHHHHHhcC------CCeEEEEeCCCcc
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNF--------DVCDLEL--TTLRDNTKLRNVLIATE------NKSILAVEDIDCS 94 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~--------~~~~i~~--~~~~~~~~l~~~~~~~~------~~~Il~lDeid~l 94 (192)
+..+||+||+|+|||++|+++|+.+-. .+..+.. ..-.+.+++++...... ..-|++||++|.+
T Consensus 26 ~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m 105 (313)
T PRK05564 26 SHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM 105 (313)
T ss_pred CceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhc
Confidence 347899999999999999999997622 2333332 11123456666655332 4569999999887
Q ss_pred ccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---CCccccccCCCcce
Q 040463 95 INLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNLLLRPGCMD 171 (192)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~~l~~~l~~~~rf~ 171 (192)
-. ...+.|+..++.-+.+ ..+|++| +.+.+.+++ |+
T Consensus 106 ~~------------------------------~a~naLLK~LEepp~~--------t~~il~~~~~~~ll~TI~S--Rc- 144 (313)
T PRK05564 106 TE------------------------------QAQNAFLKTIEEPPKG--------VFIILLCENLEQILDTIKS--RC- 144 (313)
T ss_pred CH------------------------------HHHHHHHHHhcCCCCC--------eEEEEEeCChHhCcHHHHh--hc-
Confidence 43 4568888888876543 2455555 677778888 88
Q ss_pred eEEEecCCCHHHHHHHHHh
Q 040463 172 MHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 172 ~~i~~~~p~~~~r~~i~~~ 190 (192)
..++|++|+.++....++.
T Consensus 145 ~~~~~~~~~~~~~~~~l~~ 163 (313)
T PRK05564 145 QIYKLNRLSKEEIEKFISY 163 (313)
T ss_pred eeeeCCCcCHHHHHHHHHH
Confidence 5799999999998776653
No 179
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.91 E-value=1.8e-08 Score=84.48 Aligned_cols=64 Identities=14% Similarity=0.195 Sum_probs=48.8
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhC---CcEEEeecCCCCChhHHHHHHH------------------hcCCCeEEEEeC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLN---FDVCDLELTTLRDNTKLRNVLI------------------ATENKSILAVED 90 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~---~~~~~i~~~~~~~~~~l~~~~~------------------~~~~~~Il~lDe 90 (192)
..|+|+|++||||+++|+++..... .+++.++|..+.. ..+...++ ..+.++.|||||
T Consensus 30 ~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~-~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~ 108 (326)
T PRK11608 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-NLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDE 108 (326)
T ss_pred CCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCH-HHHHHHHccccccccCCcccccCCchhccCCCeEEeCC
Confidence 4699999999999999999987653 6899999998753 33333321 123568899999
Q ss_pred CCcccc
Q 040463 91 IDCSIN 96 (192)
Q Consensus 91 id~l~~ 96 (192)
++.+..
T Consensus 109 i~~L~~ 114 (326)
T PRK11608 109 LATAPM 114 (326)
T ss_pred hhhCCH
Confidence 999865
No 180
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.91 E-value=2.4e-08 Score=83.73 Aligned_cols=118 Identities=9% Similarity=0.069 Sum_probs=82.8
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhC-------------------------CcEEEeecCC----------CCChhHHHH
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLN-------------------------FDVCDLELTT----------LRDNTKLRN 75 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~-------------------------~~~~~i~~~~----------~~~~~~l~~ 75 (192)
+.++||+||+|+|||++++.+|+.+. -++..+.... -.+-+++++
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~ 100 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVRE 100 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHH
Confidence 34799999999999999999999863 1244444321 113456666
Q ss_pred HHHhcC------CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCC
Q 040463 76 VLIATE------NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQ 149 (192)
Q Consensus 76 ~~~~~~------~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~ 149 (192)
+..... ..-|+++|+++.+-. ...+.++..++....
T Consensus 101 l~~~~~~~p~~~~~kV~iiEp~~~Ld~------------------------------~a~naLLk~LEep~~-------- 142 (325)
T PRK08699 101 IIDNVYLTSVRGGLRVILIHPAESMNL------------------------------QAANSLLKVLEEPPP-------- 142 (325)
T ss_pred HHHHHhhCcccCCceEEEEechhhCCH------------------------------HHHHHHHHHHHhCcC--------
Confidence 555443 346888899999854 456778887777643
Q ss_pred cceEEEEe---CCccccccCCCcceeEEEecCCCHHHHHHHHH
Q 040463 150 YSQLIIKT---DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLAS 189 (192)
Q Consensus 150 ~~~iiv~t---~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~ 189 (192)
...+|++| +.+.+.+.+ |+ ..+.|++|+.++..+.+.
T Consensus 143 ~~~~Ilvth~~~~ll~ti~S--Rc-~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 143 QVVFLLVSHAADKVLPTIKS--RC-RKMVLPAPSHEEALAYLR 182 (325)
T ss_pred CCEEEEEeCChHhChHHHHH--Hh-hhhcCCCCCHHHHHHHHH
Confidence 22466666 678888888 87 668999999998876654
No 181
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.90 E-value=1.6e-08 Score=90.16 Aligned_cols=64 Identities=19% Similarity=0.199 Sum_probs=49.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCChhHHHHHHHh------------------cCCCeEEEEeC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDNTKLRNVLIA------------------TENKSILAVED 90 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~~~l~~~~~~------------------~~~~~Il~lDe 90 (192)
..|+|+|++||||+++|+++.... +.+++.++|..+.. ..+...++. .+.++.|||||
T Consensus 220 ~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~lde 298 (534)
T TIGR01817 220 STVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE-TLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDE 298 (534)
T ss_pred CCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH-HHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEec
Confidence 469999999999999999999875 46899999998754 333333311 12468999999
Q ss_pred CCcccc
Q 040463 91 IDCSIN 96 (192)
Q Consensus 91 id~l~~ 96 (192)
++.+..
T Consensus 299 i~~L~~ 304 (534)
T TIGR01817 299 IGEISP 304 (534)
T ss_pred hhhCCH
Confidence 999865
No 182
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.90 E-value=8.9e-09 Score=86.37 Aligned_cols=64 Identities=23% Similarity=0.269 Sum_probs=46.7
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCCh---------hHHHHHHHhcCCCeEEEEeCCCccc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDN---------TKLRNVLIATENKSILAVEDIDCSI 95 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~---------~~l~~~~~~~~~~~Il~lDeid~l~ 95 (192)
.+++||||+|||||+|+.++|+++ +..+++++...+... ......+......-+|+|||+....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~ 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEK 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCC
Confidence 689999999999999999999987 667777777665321 1111223444567899999998753
No 183
>PF13173 AAA_14: AAA domain
Probab=98.90 E-value=2e-08 Score=72.94 Aligned_cols=64 Identities=19% Similarity=0.285 Sum_probs=47.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhC--CcEEEeecCCCCChh----HHHHHHHhc--CCCeEEEEeCCCccc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLN--FDVCDLELTTLRDNT----KLRNVLIAT--ENKSILAVEDIDCSI 95 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~--~~~~~i~~~~~~~~~----~l~~~~~~~--~~~~Il~lDeid~l~ 95 (192)
+.++|+||.|+|||++++.+++.+. .+++.+++....... .+.+.+... ..+.++||||++.+-
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~~ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYLP 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhhc
Confidence 4588999999999999999999876 778888887754321 123334333 257999999999974
No 184
>PRK04132 replication factor C small subunit; Provisional
Probab=98.88 E-value=1.6e-08 Score=93.62 Aligned_cols=115 Identities=10% Similarity=0.089 Sum_probs=90.0
Q ss_pred EEEc--CCCCcHHHHHHHHHHHh-----CCcEEEeecCCCCChhHHHHHHHhcC--------CCeEEEEeCCCccccccC
Q 040463 35 LLYS--PPRTGKSSLTAAMANYL-----NFDVCDLELTTLRDNTKLRNVLIATE--------NKSILAVEDIDCSINLQG 99 (192)
Q Consensus 35 lL~G--ppGtGKt~l~~~ia~~~-----~~~~~~i~~~~~~~~~~l~~~~~~~~--------~~~Il~lDeid~l~~~~~ 99 (192)
+..| |.+.||||+|+++|+.+ +.+++.+++++..+.+.+++.+.... +..|++|||+|.+-.
T Consensus 568 ~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~--- 644 (846)
T PRK04132 568 FIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ--- 644 (846)
T ss_pred hhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCH---
Confidence 3448 99999999999999997 56899999999777777777765432 236999999999843
Q ss_pred ccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---CCccccccCCCcceeEEEe
Q 040463 100 RHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNLLLRPGCMDMHIHM 176 (192)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~~l~~~l~~~~rf~~~i~~ 176 (192)
..++.|+..++....+ .++|+++ ..+.+.+++ |+ ..+.|
T Consensus 645 ---------------------------~AQnALLk~lEep~~~--------~~FILi~N~~~kIi~tIrS--RC-~~i~F 686 (846)
T PRK04132 645 ---------------------------DAQQALRRTMEMFSSN--------VRFILSCNYSSKIIEPIQS--RC-AIFRF 686 (846)
T ss_pred ---------------------------HHHHHHHHHhhCCCCC--------eEEEEEeCChhhCchHHhh--hc-eEEeC
Confidence 3568888888876543 3566666 788888998 88 67999
Q ss_pred cCCCHHHHHHHHHh
Q 040463 177 SYCTPCGLKMLASN 190 (192)
Q Consensus 177 ~~p~~~~r~~i~~~ 190 (192)
++|+.++....+++
T Consensus 687 ~~ls~~~i~~~L~~ 700 (846)
T PRK04132 687 RPLRDEDIAKRLRY 700 (846)
T ss_pred CCCCHHHHHHHHHH
Confidence 99998888766553
No 185
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=2.4e-08 Score=83.53 Aligned_cols=118 Identities=11% Similarity=0.087 Sum_probs=83.6
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCC------------------------cEEEeec--CCCCChhHHHHHHHhcC---
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNF------------------------DVCDLEL--TTLRDNTKLRNVLIATE--- 81 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~------------------------~~~~i~~--~~~~~~~~l~~~~~~~~--- 81 (192)
+.++||+||+|+||+++|+++|+.+-. .+..+.. ..-.+-++++++.....
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~ 103 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHA 103 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhcc
Confidence 347999999999999999999998722 1222322 11123456666555442
Q ss_pred ---CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe-
Q 040463 82 ---NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT- 157 (192)
Q Consensus 82 ---~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t- 157 (192)
..-|++||++|.+-. ...+.|+..++.-..+. .+|++|
T Consensus 104 ~~g~~KV~iI~~a~~m~~------------------------------~AaNaLLKtLEEPp~~~--------~fiL~t~ 145 (325)
T PRK06871 104 QQGGNKVVYIQGAERLTE------------------------------AAANALLKTLEEPRPNT--------YFLLQAD 145 (325)
T ss_pred ccCCceEEEEechhhhCH------------------------------HHHHHHHHHhcCCCCCe--------EEEEEEC
Confidence 346999999999854 56789999998865432 344454
Q ss_pred --CCccccccCCCcceeEEEecCCCHHHHHHHHH
Q 040463 158 --DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLAS 189 (192)
Q Consensus 158 --~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~ 189 (192)
+.+.|.+++ |+ ..+.|++|+.++..+.++
T Consensus 146 ~~~~llpTI~S--RC-~~~~~~~~~~~~~~~~L~ 176 (325)
T PRK06871 146 LSAALLPTIYS--RC-QTWLIHPPEEQQALDWLQ 176 (325)
T ss_pred ChHhCchHHHh--hc-eEEeCCCCCHHHHHHHHH
Confidence 788999998 88 568999999998876654
No 186
>PRK06921 hypothetical protein; Provisional
Probab=98.87 E-value=1.9e-08 Score=82.07 Aligned_cols=63 Identities=24% Similarity=0.248 Sum_probs=44.4
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh----CCcEEEeecCCCCCh-----hHHHHHHHhcCCCeEEEEeCCCc
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL----NFDVCDLELTTLRDN-----TKLRNVLIATENKSILAVEDIDC 93 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~----~~~~~~i~~~~~~~~-----~~l~~~~~~~~~~~Il~lDeid~ 93 (192)
..+++|+||||+|||+|+.++|+++ +..+++++...+... ......+....+..+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 4579999999999999999999976 456667765443211 11222334445678999999955
No 187
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.87 E-value=1.3e-08 Score=92.33 Aligned_cols=124 Identities=15% Similarity=0.170 Sum_probs=79.0
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhC-----------------------------------CcEEEeecCCCC----ChhH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLN-----------------------------------FDVCDLELTTLR----DNTK 72 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~-----------------------------------~~~~~i~~~~~~----~~~~ 72 (192)
.++||+|++|||||++++++++.+. .+|+.+.++... +...
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d 105 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD 105 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc
Confidence 4699999999999999999999872 455555444321 1222
Q ss_pred HHHHHHhc-----------CCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCcc-
Q 040463 73 LRNVLIAT-----------ENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVC- 140 (192)
Q Consensus 73 l~~~~~~~-----------~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~- 140 (192)
+...+... +..+||||||++.+.. ..++.|+..++.-.
T Consensus 106 ~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~------------------------------~~q~~Ll~~le~g~~ 155 (633)
T TIGR02442 106 IERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD------------------------------HLVDVLLDAAAMGVN 155 (633)
T ss_pred HHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH------------------------------HHHHHHHHHHhcCCE
Confidence 33333211 1457999999999865 56677877775321
Q ss_pred --ccccccCC---CcceEEEE-e-----CCccccccCCCcceeEEEecCCC-HHHHHHHHHh
Q 040463 141 --RAVEMRGS---QYSQLIIK-T-----DLTLNLLLRPGCMDMHIHMSYCT-PCGLKMLASN 190 (192)
Q Consensus 141 --~~~~~~~~---~~~~iiv~-t-----~~l~~~l~~~~rf~~~i~~~~p~-~~~r~~i~~~ 190 (192)
... |. -..+++++ | ..+.++|+. ||+..|.++++. .+++.+++++
T Consensus 156 ~v~r~---g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 156 RVERE---GLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred EEEEC---CceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHH
Confidence 000 10 01234433 4 346778888 999999999875 5667777654
No 188
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.87 E-value=1.1e-08 Score=77.98 Aligned_cols=64 Identities=22% Similarity=0.205 Sum_probs=48.0
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCChhHHHHHHHhc------------------CCCeEEEEeC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDNTKLRNVLIAT------------------ENKSILAVED 90 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~~~l~~~~~~~------------------~~~~Il~lDe 90 (192)
..|+|+|++||||+.+|+++.+.. +.+|+.++|+.+.. +.+...++.. +..+.|||||
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~-~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~ 101 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPE-ELLESELFGHEKGAFTGARSDKKGLLEQANGGTLFLDE 101 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-H-HHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEET
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhc-chhhhhhhccccccccccccccCCceeeccceEEeecc
Confidence 579999999999999999999976 36899999999754 3344444322 2578999999
Q ss_pred CCcccc
Q 040463 91 IDCSIN 96 (192)
Q Consensus 91 id~l~~ 96 (192)
|+.+..
T Consensus 102 I~~L~~ 107 (168)
T PF00158_consen 102 IEDLPP 107 (168)
T ss_dssp GGGS-H
T ss_pred hhhhHH
Confidence 999865
No 189
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.86 E-value=2.1e-08 Score=80.85 Aligned_cols=64 Identities=23% Similarity=0.377 Sum_probs=47.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCC---------hhHHHHHHHhcCCCeEEEEeCCCccc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRD---------NTKLRNVLIATENKSILAVEDIDCSI 95 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~---------~~~l~~~~~~~~~~~Il~lDeid~l~ 95 (192)
.+++|+|+||||||+++.++|+++ +..++.++...+.. .....+.+.......+|+|||++...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~ 175 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQT 175 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCC
Confidence 489999999999999999999988 66777776655431 11122344445568899999998853
No 190
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.85 E-value=1.9e-09 Score=82.96 Aligned_cols=65 Identities=26% Similarity=0.443 Sum_probs=45.1
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCC-------hhHHHHHHHhcCCCeEEEEeCCCcc
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRD-------NTKLRNVLIATENKSILAVEDIDCS 94 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~-------~~~l~~~~~~~~~~~Il~lDeid~l 94 (192)
.+.|++|+||||||||++|.++++++ |..+..++...+.. .....+.+....+.-+|+|||+...
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~ 120 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGYE 120 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccccEeccccccee
Confidence 34689999999999999999999876 77777777765521 1123334444556789999998763
No 191
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.84 E-value=1e-07 Score=77.34 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=22.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
.++|+||+|+|||++++.+++.+.
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcC
Confidence 488999999999999999999875
No 192
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=4.5e-08 Score=81.79 Aligned_cols=118 Identities=12% Similarity=0.081 Sum_probs=82.9
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCC---------------------cEEEee--cCC-------CCChhHHHHHHHhc
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNF---------------------DVCDLE--LTT-------LRDNTKLRNVLIAT 80 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~---------------------~~~~i~--~~~-------~~~~~~l~~~~~~~ 80 (192)
+..+||+||+|+||+++|.++|+.+-. ++..+. ... -..-++++++....
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~ 105 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKL 105 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHH
Confidence 347999999999999999999987621 122231 111 01234555555544
Q ss_pred C------CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 81 E------NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 81 ~------~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
. ..-|++||++|.+-. ...|.|+..++.-..+ ..+|
T Consensus 106 ~~~p~~g~~kV~iI~~ae~m~~------------------------------~AaNaLLKtLEEPp~~--------~~fi 147 (319)
T PRK08769 106 ALTPQYGIAQVVIVDPADAINR------------------------------AACNALLKTLEEPSPG--------RYLW 147 (319)
T ss_pred hhCcccCCcEEEEeccHhhhCH------------------------------HHHHHHHHHhhCCCCC--------CeEE
Confidence 3 346999999999843 5678899998887543 2455
Q ss_pred EEe---CCccccccCCCcceeEEEecCCCHHHHHHHHH
Q 040463 155 IKT---DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLAS 189 (192)
Q Consensus 155 v~t---~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~ 189 (192)
+++ +.+.|.+++ |+ ..+.|++|+.++-.+.+.
T Consensus 148 L~~~~~~~lLpTIrS--RC-q~i~~~~~~~~~~~~~L~ 182 (319)
T PRK08769 148 LISAQPARLPATIRS--RC-QRLEFKLPPAHEALAWLL 182 (319)
T ss_pred EEECChhhCchHHHh--hh-eEeeCCCcCHHHHHHHHH
Confidence 566 788899999 98 568999999988876664
No 193
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=7.6e-08 Score=80.40 Aligned_cols=118 Identities=13% Similarity=0.082 Sum_probs=84.8
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhC-----------------------CcEEEeecC---CCCChhHHHHHHHhcC---
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLN-----------------------FDVCDLELT---TLRDNTKLRNVLIATE--- 81 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~-----------------------~~~~~i~~~---~~~~~~~l~~~~~~~~--- 81 (192)
+..+||+||.|+||+++|+++|+.+- -.+..+... ...+-++++++.....
T Consensus 25 ~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~ 104 (319)
T PRK06090 25 PGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQESS 104 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhCc
Confidence 34799999999999999999999762 124334332 1123456665544432
Q ss_pred ---CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe-
Q 040463 82 ---NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT- 157 (192)
Q Consensus 82 ---~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t- 157 (192)
..-|++||++|.+-. ...|.|+..++.-..+ ..+|++|
T Consensus 105 ~~~~~kV~iI~~ae~m~~------------------------------~AaNaLLKtLEEPp~~--------t~fiL~t~ 146 (319)
T PRK06090 105 QLNGYRLFVIEPADAMNE------------------------------SASNALLKTLEEPAPN--------CLFLLVTH 146 (319)
T ss_pred ccCCceEEEecchhhhCH------------------------------HHHHHHHHHhcCCCCC--------eEEEEEEC
Confidence 346999999999843 5678899999886543 2455555
Q ss_pred --CCccccccCCCcceeEEEecCCCHHHHHHHHH
Q 040463 158 --DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLAS 189 (192)
Q Consensus 158 --~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~ 189 (192)
+.+.|.+++ |+ ..+.|++|+.++..+.++
T Consensus 147 ~~~~lLpTI~S--RC-q~~~~~~~~~~~~~~~L~ 177 (319)
T PRK06090 147 NQKRLLPTIVS--RC-QQWVVTPPSTAQAMQWLK 177 (319)
T ss_pred ChhhChHHHHh--cc-eeEeCCCCCHHHHHHHHH
Confidence 788889999 98 569999999999887765
No 194
>PF05729 NACHT: NACHT domain
Probab=98.81 E-value=7e-08 Score=71.99 Aligned_cols=130 Identities=20% Similarity=0.221 Sum_probs=72.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCC---------cEEEeecCCCCChh---HHHHH------------------HHhcCC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNF---------DVCDLELTTLRDNT---KLRNV------------------LIATEN 82 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~---------~~~~i~~~~~~~~~---~l~~~------------------~~~~~~ 82 (192)
-++|+|+||+|||++++.++..+.. .++...+....... .+.+. +.....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 3789999999999999999987621 12234443332211 12111 112235
Q ss_pred CeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcC-ccccccccCCCcceEEEEe-CCc
Q 040463 83 KSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDG-VCRAVEMRGSQYSQLIIKT-DLT 160 (192)
Q Consensus 83 ~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~~~~~~~~~~~iiv~t-~~l 160 (192)
+.+++||.+|.+.. ..... ........+...+.. ... ..++++++ ..-
T Consensus 82 ~~llilDglDE~~~--~~~~~--------------------~~~~~~~~l~~l~~~~~~~--------~~~liit~r~~~ 131 (166)
T PF05729_consen 82 RVLLILDGLDELEE--QDQSQ--------------------ERQRLLDLLSQLLPQALPP--------GVKLIITSRPRA 131 (166)
T ss_pred ceEEEEechHhccc--chhhh--------------------HHHHHHHHHHHHhhhccCC--------CCeEEEEEcCCh
Confidence 78999999999865 11100 011112222233333 111 34677777 222
Q ss_pred cccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 161 LNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 161 ~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
.+.+.+.-.-...+.+.+.++++..++++.|+
T Consensus 132 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f 163 (166)
T PF05729_consen 132 FPDLRRRLKQAQILELEPFSEEDIKQYLRKYF 163 (166)
T ss_pred HHHHHHhcCCCcEEEECCCCHHHHHHHHHHHh
Confidence 21233211112568999999999999998875
No 195
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=5.4e-08 Score=81.92 Aligned_cols=118 Identities=14% Similarity=0.082 Sum_probs=84.2
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCC------------------------cEEEeecC---CCCChhHHHHHHHhcC--
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNF------------------------DVCDLELT---TLRDNTKLRNVLIATE-- 81 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~------------------------~~~~i~~~---~~~~~~~l~~~~~~~~-- 81 (192)
+..+||+||+|+||+++|.++|+.+-. .+..+... ...+-+++++......
T Consensus 24 ~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~ 103 (334)
T PRK07993 24 HHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYEH 103 (334)
T ss_pred ceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhhc
Confidence 347999999999999999999998722 12223222 1123456666655443
Q ss_pred ----CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe
Q 040463 82 ----NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT 157 (192)
Q Consensus 82 ----~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t 157 (192)
..-|++||++|.+-. ...|.|+..++.-..+ ..+|++|
T Consensus 104 ~~~g~~kV~iI~~ae~m~~------------------------------~AaNaLLKtLEEPp~~--------t~fiL~t 145 (334)
T PRK07993 104 ARLGGAKVVWLPDAALLTD------------------------------AAANALLKTLEEPPEN--------TWFFLAC 145 (334)
T ss_pred cccCCceEEEEcchHhhCH------------------------------HHHHHHHHHhcCCCCC--------eEEEEEE
Confidence 357999999999743 5678999999886543 2444555
Q ss_pred ---CCccccccCCCcceeEEEecCCCHHHHHHHHH
Q 040463 158 ---DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLAS 189 (192)
Q Consensus 158 ---~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~ 189 (192)
+.+.|.+++ |+- .+.|++|+.++..+.+.
T Consensus 146 ~~~~~lLpTIrS--RCq-~~~~~~~~~~~~~~~L~ 177 (334)
T PRK07993 146 REPARLLATLRS--RCR-LHYLAPPPEQYALTWLS 177 (334)
T ss_pred CChhhChHHHHh--ccc-cccCCCCCHHHHHHHHH
Confidence 788999999 885 58999999998877663
No 196
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=8e-08 Score=80.24 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=81.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCc------------------EEEeecCCC-----------------------CCh
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFD------------------VCDLELTTL-----------------------RDN 70 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~------------------~~~i~~~~~-----------------------~~~ 70 (192)
..+||+||+|+||+++|.++|+.+-.. +..+..... ..-
T Consensus 27 ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~i 106 (314)
T PRK07399 27 PAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRL 106 (314)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhccccccccccCcH
Confidence 479999999999999999999986221 122222100 011
Q ss_pred hHHHHHHHhcC------CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCcccccc
Q 040463 71 TKLRNVLIATE------NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVE 144 (192)
Q Consensus 71 ~~l~~~~~~~~------~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 144 (192)
++++++..... ..-|++||++|.+-. ...+.|+..++.-. +.
T Consensus 107 d~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~------------------------------~aaNaLLK~LEEPp-~~- 154 (314)
T PRK07399 107 EQIREIKRFLSRPPLEAPRKVVVIEDAETMNE------------------------------AAANALLKTLEEPG-NG- 154 (314)
T ss_pred HHHHHHHHHHccCcccCCceEEEEEchhhcCH------------------------------HHHHHHHHHHhCCC-CC-
Confidence 24444444332 457999999998743 45688888887765 22
Q ss_pred ccCCCcceEEEEe---CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 145 MRGSQYSQLIIKT---DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 145 ~~~~~~~~iiv~t---~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
.+|++| +.+-+.+++ |+ ..+.|++++.++..++++.
T Consensus 155 -------~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~ 193 (314)
T PRK07399 155 -------TLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKR 193 (314)
T ss_pred -------eEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHH
Confidence 456666 788889998 88 6799999999999888764
No 197
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.80 E-value=2.2e-08 Score=83.25 Aligned_cols=65 Identities=26% Similarity=0.352 Sum_probs=49.3
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCC-------hhHHHHHHHhcCCCeEEEEeCCCcc
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRD-------NTKLRNVLIATENKSILAVEDIDCS 94 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~-------~~~l~~~~~~~~~~~Il~lDeid~l 94 (192)
...|++|+||+|||||+|+.++|+++ |..+..+....+.. ...+.+.+....+..+|+|||+..-
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKEAPVLMLDDIGAE 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcCCCEEEEecCCCc
Confidence 34689999999999999999999988 67777776665431 1123455566667899999999774
No 198
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.80 E-value=1.6e-08 Score=89.58 Aligned_cols=126 Identities=12% Similarity=0.100 Sum_probs=76.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEe----ecCCCCChhHHHHH----------HHhcCCCeEEEEeCCCcccccc
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDL----ELTTLRDNTKLRNV----------LIATENKSILAVEDIDCSINLQ 98 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i----~~~~~~~~~~l~~~----------~~~~~~~~Il~lDeid~l~~~~ 98 (192)
.+||+|+||||||++++++++......+.. ++..+.. ..+.+. ....+..+++++||+|.+..
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~-~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~-- 314 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTA-AVTRDPETREFTLEGGALVLADNGVCCIDEFDKMDD-- 314 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccc-cceEccCcceEEecCccEEecCCCEEEEechhhCCH--
Confidence 599999999999999999999876543321 1111211 111110 00112578999999999854
Q ss_pred CccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCcc---ccc--cccCCCcceEEEEe----C-----------
Q 040463 99 GRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVC---RAV--EMRGSQYSQLIIKT----D----------- 158 (192)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---~~~--~~~~~~~~~iiv~t----~----------- 158 (192)
.....|+..|+.-. ... ...-....+||.++ .
T Consensus 315 ----------------------------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n 366 (509)
T smart00350 315 ----------------------------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEEN 366 (509)
T ss_pred ----------------------------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhc
Confidence 34555666664321 000 00000123344444 1
Q ss_pred -CccccccCCCcceeE-EEecCCCHHHHHHHHHhc
Q 040463 159 -LTLNLLLRPGCMDMH-IHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 159 -~l~~~l~~~~rf~~~-i~~~~p~~~~r~~i~~~~ 191 (192)
.+++++++ ||+.. +...+|+.+...+|.++.
T Consensus 367 ~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i 399 (509)
T smart00350 367 IDLPAPILS--RFDLLFVVLDEVDEERDRELAKHV 399 (509)
T ss_pred cCCChHHhC--ceeeEEEecCCCChHHHHHHHHHH
Confidence 68999999 99775 456899999999988763
No 199
>PRK06526 transposase; Provisional
Probab=98.79 E-value=6.9e-09 Score=84.14 Aligned_cols=65 Identities=18% Similarity=0.259 Sum_probs=45.3
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCC-------hhHHHHHHHhcCCCeEEEEeCCCccc
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRD-------NTKLRNVLIATENKSILAVEDIDCSI 95 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~-------~~~l~~~~~~~~~~~Il~lDeid~l~ 95 (192)
+.+++|+||||||||+++.+++.++ |..+...+...+.. ...+...+....++.+|+|||++.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIP 172 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCC
Confidence 3579999999999999999998875 55555544433221 11233444555578899999999864
No 200
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.79 E-value=3.4e-08 Score=78.97 Aligned_cols=67 Identities=19% Similarity=0.195 Sum_probs=56.3
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHHHHHHhcC-CCeEEEEeCCCcccc
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRNVLIATE-NKSILAVEDIDCSIN 96 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~~~~~~~~-~~~Il~lDeid~l~~ 96 (192)
...+-.++||+|||||..++.+|+.+|.+++..+|+...+...+.+++.... .++-+++||++.+..
T Consensus 31 ~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~GaW~cfdefnrl~~ 98 (231)
T PF12774_consen 31 LNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSGAWLCFDEFNRLSE 98 (231)
T ss_dssp TTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT-EEEEETCCCSSH
T ss_pred cCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcCchhhhhhhhhhhH
Confidence 3456788999999999999999999999999999999998889999998776 589999999999854
No 201
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.78 E-value=4.1e-08 Score=87.24 Aligned_cols=64 Identities=14% Similarity=0.143 Sum_probs=49.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH-----------hCCcEEEeecCCCCChhHHHHHHHh-------------------cC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY-----------LNFDVCDLELTTLRDNTKLRNVLIA-------------------TE 81 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~-----------~~~~~~~i~~~~~~~~~~l~~~~~~-------------------~~ 81 (192)
..|||+|++||||+++|+++.+. .+.+|+.++|..+.. +.+...++. .+
T Consensus 243 ~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e-~lleseLFG~~~gaftga~~~~~~Gl~e~A 321 (538)
T PRK15424 243 AAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAE-SLLEAELFGYEEGAFTGSRRGGRAGLFEIA 321 (538)
T ss_pred CcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCCh-hhHHHHhcCCccccccCccccccCCchhcc
Confidence 46999999999999999999987 356899999998764 333333322 22
Q ss_pred CCeEEEEeCCCcccc
Q 040463 82 NKSILAVEDIDCSIN 96 (192)
Q Consensus 82 ~~~Il~lDeid~l~~ 96 (192)
..+.|||||++.+..
T Consensus 322 ~gGTLfLdeI~~Lp~ 336 (538)
T PRK15424 322 HGGTLFLDEIGEMPL 336 (538)
T ss_pred CCCEEEEcChHhCCH
Confidence 467899999999854
No 202
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.78 E-value=2.8e-08 Score=71.79 Aligned_cols=38 Identities=29% Similarity=0.431 Sum_probs=29.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh--------CCcEEEeecCCCCC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL--------NFDVCDLELTTLRD 69 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~--------~~~~~~i~~~~~~~ 69 (192)
..++++||||+|||++++.+++.+ ..+++.+++.....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRT 50 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSS
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCC
Confidence 468899999999999999999987 67778777766543
No 203
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.77 E-value=3.3e-08 Score=88.97 Aligned_cols=127 Identities=17% Similarity=0.148 Sum_probs=80.0
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCC--cEEEeecCCCC----ChhHHHHHHHh-----------cCCCeEEEEeCCCcc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNF--DVCDLELTTLR----DNTKLRNVLIA-----------TENKSILAVEDIDCS 94 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~--~~~~i~~~~~~----~~~~l~~~~~~-----------~~~~~Il~lDeid~l 94 (192)
.++||.|+||||||++++++++.++. +|+.+..+... +...+...+.. .+..++||+||++.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 36999999999999999999998764 47777653211 11112221111 124579999999998
Q ss_pred ccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCcc---ccc--cccCCCcceEEEEe----C---Cccc
Q 040463 95 INLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVC---RAV--EMRGSQYSQLIIKT----D---LTLN 162 (192)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---~~~--~~~~~~~~~iiv~t----~---~l~~ 162 (192)
.. ..+..|+..|+.-. ... .... +....+|+| + .+++
T Consensus 97 ~~------------------------------~~q~~Ll~al~~g~v~i~r~G~~~~~-p~~f~lIAt~np~e~~g~L~~ 145 (589)
T TIGR02031 97 DD------------------------------GLSNRLLQALDEGVVIVEREGISVVH-PAKFALIATYDPAEGGGGLPD 145 (589)
T ss_pred CH------------------------------HHHHHHHHHHHcCCeEEEECCCceee-cCceEEEEecCCccccCCCCH
Confidence 65 56677877775332 100 0000 011233344 2 5778
Q ss_pred cccCCCcceeEEEecC-CCHHHHHHHHHhc
Q 040463 163 LLLRPGCMDMHIHMSY-CTPCGLKMLASNY 191 (192)
Q Consensus 163 ~l~~~~rf~~~i~~~~-p~~~~r~~i~~~~ 191 (192)
+++. ||..++.+.+ |+.++|.+|++++
T Consensus 146 ~Lld--Rf~l~v~~~~~~~~~er~eil~~~ 173 (589)
T TIGR02031 146 HLLD--RLALHVSLEDVASQDLRVEIVRRE 173 (589)
T ss_pred HHHH--hccCeeecCCCCCHHHHHHHHHHH
Confidence 8888 9999887774 5667788888653
No 204
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.77 E-value=6.3e-08 Score=87.40 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=24.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDV 59 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~ 59 (192)
..++|+||||||||++++.+|..++..+
T Consensus 111 ~illL~GP~GsGKTTl~~~la~~l~~~~ 138 (637)
T TIGR00602 111 RILLITGPSGCGKSTTIKILSKELGIQV 138 (637)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhHH
Confidence 3488999999999999999999987654
No 205
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.75 E-value=3.9e-08 Score=78.04 Aligned_cols=63 Identities=22% Similarity=0.337 Sum_probs=50.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh-C----CcEEEeecCCCCChhHHHHHHHhcC---------CCeEEEEeCCCccc
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL-N----FDVCDLELTTLRDNTKLRNVLIATE---------NKSILAVEDIDCSI 95 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~-~----~~~~~i~~~~~~~~~~l~~~~~~~~---------~~~Il~lDeid~l~ 95 (192)
++++.|||||||||.+.++|+++ | -.++++++++-.+-+-++..++..+ +--|+++||+|+.-
T Consensus 50 ~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT 126 (333)
T KOG0991|consen 50 NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT 126 (333)
T ss_pred ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhh
Confidence 69999999999999999999986 3 3577889888766666665555442 44799999999974
No 206
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.75 E-value=1.7e-08 Score=78.92 Aligned_cols=24 Identities=38% Similarity=0.624 Sum_probs=20.2
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
.++|++||||||||++|+.+...+
T Consensus 23 h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 23 HHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp --EEEES-CCCTHHHHHHHHHHCS
T ss_pred CCeEEECCCCCCHHHHHHHHHHhC
Confidence 489999999999999999999876
No 207
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.75 E-value=1.5e-07 Score=84.21 Aligned_cols=122 Identities=17% Similarity=0.191 Sum_probs=83.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEeecCCCCChhH----------------------HHHHHH--
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL----------NFDVCDLELTTLRDNTK----------------------LRNVLI-- 78 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~----------~~~~~~i~~~~~~~~~~----------------------l~~~~~-- 78 (192)
.+++.|-||||||..++.+-+.+ ...++.+++-.+.+..+ +...|.
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 48888999999999999888865 35677888776655322 223333
Q ss_pred -hcCCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe
Q 040463 79 -ATENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT 157 (192)
Q Consensus 79 -~~~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t 157 (192)
..+.++|++|||+|.|.. +...-|.+++|..... +.+++|++
T Consensus 504 k~~~~~~VvLiDElD~Lvt------------------------------r~QdVlYn~fdWpt~~-------~sKLvvi~ 546 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVT------------------------------RSQDVLYNIFDWPTLK-------NSKLVVIA 546 (767)
T ss_pred CCCCCCEEEEeccHHHHhc------------------------------ccHHHHHHHhcCCcCC-------CCceEEEE
Confidence 112589999999999987 3446677777766542 45677666
Q ss_pred ----CCccccccCC---Ccce-eEEEecCCCHHHHHHHHHhc
Q 040463 158 ----DLTLNLLLRP---GCMD-MHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 158 ----~~l~~~l~~~---~rf~-~~i~~~~p~~~~r~~i~~~~ 191 (192)
-.+++.++-+ .|.+ ..|.|.+++.+|..+|+..-
T Consensus 547 IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~R 588 (767)
T KOG1514|consen 547 IANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISAR 588 (767)
T ss_pred ecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHh
Confidence 4455555421 1443 45899999999999998653
No 208
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.74 E-value=1.3e-07 Score=86.02 Aligned_cols=64 Identities=17% Similarity=0.140 Sum_probs=49.2
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhC---CcEEEeecCCCCChhHHHHHHHh---------------cCCCeEEEEeCCCc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLN---FDVCDLELTTLRDNTKLRNVLIA---------------TENKSILAVEDIDC 93 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~---~~~~~i~~~~~~~~~~l~~~~~~---------------~~~~~Il~lDeid~ 93 (192)
..|+|+|++||||+++|+++.+... .+++.++|..+.. +.+...++. .+.++.|||||++.
T Consensus 349 ~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~-~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~ 427 (638)
T PRK11388 349 FPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD-EALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEY 427 (638)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh-HHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhh
Confidence 3599999999999999999998764 6899999999764 233322221 13578999999999
Q ss_pred ccc
Q 040463 94 SIN 96 (192)
Q Consensus 94 l~~ 96 (192)
+..
T Consensus 428 l~~ 430 (638)
T PRK11388 428 LSP 430 (638)
T ss_pred CCH
Confidence 854
No 209
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.74 E-value=1.3e-07 Score=83.86 Aligned_cols=65 Identities=14% Similarity=0.129 Sum_probs=49.2
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCChhHHHHHHH------------------hcCCCeEEEEe
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDNTKLRNVLI------------------ATENKSILAVE 89 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~~~l~~~~~------------------~~~~~~Il~lD 89 (192)
+..|+|+|++||||+++|+++.... +.+++.++|..+.. +.+...++ ..+.++.||||
T Consensus 210 ~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~-~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ld 288 (509)
T PRK05022 210 DLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPE-SLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLD 288 (509)
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCCh-HHHHHHhcCccccccCCCcccCCcchhhcCCCEEEec
Confidence 3469999999999999999999875 46899999998754 22222221 12356789999
Q ss_pred CCCcccc
Q 040463 90 DIDCSIN 96 (192)
Q Consensus 90 eid~l~~ 96 (192)
|++.+..
T Consensus 289 eI~~L~~ 295 (509)
T PRK05022 289 EIGELPL 295 (509)
T ss_pred ChhhCCH
Confidence 9999864
No 210
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.5e-07 Score=82.16 Aligned_cols=130 Identities=20% Similarity=0.269 Sum_probs=85.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEe-ecCCCCC------hhHHHHHHHhcC-C-CeEEEEeCCCccccccCccc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDL-ELTTLRD------NTKLRNVLIATE-N-KSILAVEDIDCSINLQGRHS 102 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i-~~~~~~~------~~~l~~~~~~~~-~-~~Il~lDeid~l~~~~~~~~ 102 (192)
.++||.||||+|||+||..+|.....||+.+ +..++.+ -.++...|..+- . -+|+++||++.+.+.-.-.
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpIG- 617 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPIG- 617 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccccC-
Confidence 4699999999999999999999999999854 4444432 235666676664 3 4899999999997511100
Q ss_pred cccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe-----CCc-cccccCCCcceeEEEe
Q 040463 103 QAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-----DLT-LNLLLRPGCMDMHIHM 176 (192)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-----~~l-~~~l~~~~rf~~~i~~ 176 (192)
-..+..++..|+-.+...+.. ..+++|++ +-+ +=.++. +|+..|.+
T Consensus 618 -------------------PRfSN~vlQaL~VllK~~ppk-------g~kLli~~TTS~~~vL~~m~i~~--~F~~~i~V 669 (744)
T KOG0741|consen 618 -------------------PRFSNLVLQALLVLLKKQPPK-------GRKLLIFGTTSRREVLQEMGILD--CFSSTIHV 669 (744)
T ss_pred -------------------chhhHHHHHHHHHHhccCCCC-------CceEEEEecccHHHHHHHcCHHH--hhhheeec
Confidence 112335566666666665432 23566555 111 223445 89999999
Q ss_pred cCCCH-HHHHHHHHh
Q 040463 177 SYCTP-CGLKMLASN 190 (192)
Q Consensus 177 ~~p~~-~~r~~i~~~ 190 (192)
|..+. ++..++++.
T Consensus 670 pnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 670 PNLTTGEQLLEVLEE 684 (744)
T ss_pred CccCchHHHHHHHHH
Confidence 98776 666666653
No 211
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.71 E-value=9.3e-08 Score=81.67 Aligned_cols=121 Identities=12% Similarity=0.048 Sum_probs=77.3
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh----CCcEEEeecCCCCChhHHHHHHH-------hc----------CCCeEEEEe
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL----NFDVCDLELTTLRDNTKLRNVLI-------AT----------ENKSILAVE 89 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~----~~~~~~i~~~~~~~~~~l~~~~~-------~~----------~~~~Il~lD 89 (192)
...+|++|++||||+.+|+.|.... +.+++.+||..+..+-.....|- .+ +..+.||+|
T Consensus 101 ~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLD 180 (403)
T COG1221 101 GLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLD 180 (403)
T ss_pred CCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeecccCCcCchheecCCCEEehh
Confidence 3469999999999999999998654 45899999999877555544222 11 147899999
Q ss_pred CCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccc---cccCCCcceEEEEe-CCcccccc
Q 040463 90 DIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAV---EMRGSQYSQLIIKT-DLTLNLLL 165 (192)
Q Consensus 90 eid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~---~~~~~~~~~iiv~t-~~l~~~l~ 165 (192)
||..+-. ..+..++..++.-.-.+ +-.-..+.+++.+| ..++..++
T Consensus 181 EI~~LP~------------------------------~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~ 230 (403)
T COG1221 181 EIHRLPP------------------------------EGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVL 230 (403)
T ss_pred hhhhCCH------------------------------hHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHH
Confidence 9999865 34566776666421110 00011145677777 44544444
Q ss_pred C-C----CcceeEEEecCCCH
Q 040463 166 R-P----GCMDMHIHMSYCTP 181 (192)
Q Consensus 166 ~-~----~rf~~~i~~~~p~~ 181 (192)
. . -++...|.+|+..+
T Consensus 231 ~g~dl~~rl~~~~I~LPpLrE 251 (403)
T COG1221 231 AGADLTRRLNILTITLPPLRE 251 (403)
T ss_pred hhcchhhhhcCceecCCChhh
Confidence 3 0 05666677776654
No 212
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.71 E-value=1.3e-07 Score=83.98 Aligned_cols=64 Identities=16% Similarity=0.251 Sum_probs=49.2
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCChhHHHHHHHh-------------------cCCCeEEEEe
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDNTKLRNVLIA-------------------TENKSILAVE 89 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~~~l~~~~~~-------------------~~~~~Il~lD 89 (192)
..|+|+|++||||+++|+++.+.. +.+|+.++|..+.. +.+...++. .+..+.||||
T Consensus 236 ~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e-~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLd 314 (526)
T TIGR02329 236 ATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE-SLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLD 314 (526)
T ss_pred CcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh-hHHHHHhcCCcccccccccccccccchhhcCCceEEec
Confidence 469999999999999999998765 46899999998754 333333322 1246789999
Q ss_pred CCCcccc
Q 040463 90 DIDCSIN 96 (192)
Q Consensus 90 eid~l~~ 96 (192)
|++.+..
T Consensus 315 eI~~Lp~ 321 (526)
T TIGR02329 315 EIGEMPL 321 (526)
T ss_pred ChHhCCH
Confidence 9999854
No 213
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.71 E-value=3.8e-07 Score=71.56 Aligned_cols=25 Identities=40% Similarity=0.604 Sum_probs=22.7
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
..++|+||.|+|||++++.+.+...
T Consensus 21 ~~~~l~G~rg~GKTsLl~~~~~~~~ 45 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSLLKEFINELK 45 (234)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred cEEEEEcCCcCCHHHHHHHHHHHhh
Confidence 4699999999999999999999873
No 214
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.69 E-value=1.3e-07 Score=86.78 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=47.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCChhHHHHHH------------------HhcCCCeEEEEeC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDNTKLRNVL------------------IATENKSILAVED 90 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~~~l~~~~------------------~~~~~~~Il~lDe 90 (192)
..|+|+|++|||||++|+++.... +.+++.++|..+.. ..+...+ ...+.++.|||||
T Consensus 400 ~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~-~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Lde 478 (686)
T PRK15429 400 STVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA-GLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDE 478 (686)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh-hHhhhhhcCcccccccccccchhhHHHhcCCCeEEEec
Confidence 469999999999999999998865 46899999988643 1111111 1223568999999
Q ss_pred CCcccc
Q 040463 91 IDCSIN 96 (192)
Q Consensus 91 id~l~~ 96 (192)
++.+..
T Consensus 479 i~~L~~ 484 (686)
T PRK15429 479 VGDMPL 484 (686)
T ss_pred hhhCCH
Confidence 999854
No 215
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.68 E-value=3.4e-08 Score=69.68 Aligned_cols=63 Identities=16% Similarity=0.270 Sum_probs=40.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHHHHHHhcCCCeEEEEeCCCcccc
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRNVLIATENKSILAVEDIDCSIN 96 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~Il~lDeid~l~~ 96 (192)
|.||||||+|||++++.+++.+..++-......+-....-.+.+.......++++||+.....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~~q~vvi~DD~~~~~~ 63 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQGQPVVIIDDFGQDND 63 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccCCCcEEEEeecCcccc
Confidence 579999999999999999987754431111111111112234556666678899999888643
No 216
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.68 E-value=2.8e-07 Score=82.00 Aligned_cols=64 Identities=17% Similarity=0.141 Sum_probs=47.7
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCChhHHHHHHHh------------------cCCCeEEEEeC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDNTKLRNVLIA------------------TENKSILAVED 90 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~~~l~~~~~~------------------~~~~~Il~lDe 90 (192)
..++|+|++||||+++|+++.... ..+++.++|..+.. +.+...++. .+.++.|||||
T Consensus 228 ~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~-~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~Lde 306 (520)
T PRK10820 228 APLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD-DVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDE 306 (520)
T ss_pred CCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH-HHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeC
Confidence 359999999999999999987665 35799999998763 233322221 13467899999
Q ss_pred CCcccc
Q 040463 91 IDCSIN 96 (192)
Q Consensus 91 id~l~~ 96 (192)
++.+..
T Consensus 307 I~~L~~ 312 (520)
T PRK10820 307 IGEMSP 312 (520)
T ss_pred hhhCCH
Confidence 999865
No 217
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.66 E-value=9e-08 Score=77.64 Aligned_cols=66 Identities=24% Similarity=0.382 Sum_probs=48.4
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCCh-------hHHHH-HHHhcCCCeEEEEeCCCccc
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDN-------TKLRN-VLIATENKSILAVEDIDCSI 95 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~-------~~l~~-~~~~~~~~~Il~lDeid~l~ 95 (192)
.+.+++|+||||+|||+|+-|+++++ |.++..++...+... ..... ......+.-+|+|||+-..-
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~~ 180 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYEP 180 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhhcCCEEEEecccCcc
Confidence 35689999999999999999999987 677888877776421 01112 22225567899999998853
No 218
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.63 E-value=2.7e-07 Score=76.00 Aligned_cols=83 Identities=12% Similarity=0.220 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEeecCCCCChhHH----
Q 040463 7 HMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYL---------NFDVCDLELTTLRDNTKL---- 73 (192)
Q Consensus 7 ~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~---------~~~~~~i~~~~~~~~~~l---- 73 (192)
+++++.++..+..++. .-..+++|+|++|.|||++++.++... .++++.+....-.+...+
T Consensus 43 ~~~L~~L~~Ll~~P~~------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~I 116 (302)
T PF05621_consen 43 KEALDRLEELLEYPKR------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAI 116 (302)
T ss_pred HHHHHHHHHHHhCCcc------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHH
Confidence 3455556666555432 222589999999999999999999765 246666655443322111
Q ss_pred ---------------------HHHHHhcCCCeEEEEeCCCcccc
Q 040463 74 ---------------------RNVLIATENKSILAVEDIDCSIN 96 (192)
Q Consensus 74 ---------------------~~~~~~~~~~~Il~lDeid~l~~ 96 (192)
...+ +.-..-+|+|||++.++.
T Consensus 117 L~~lgaP~~~~~~~~~~~~~~~~ll-r~~~vrmLIIDE~H~lLa 159 (302)
T PF05621_consen 117 LEALGAPYRPRDRVAKLEQQVLRLL-RRLGVRMLIIDEFHNLLA 159 (302)
T ss_pred HHHhCcccCCCCCHHHHHHHHHHHH-HHcCCcEEEeechHHHhc
Confidence 1222 222567999999999865
No 219
>PRK09183 transposase/IS protein; Provisional
Probab=98.61 E-value=1.1e-07 Score=77.36 Aligned_cols=65 Identities=17% Similarity=0.213 Sum_probs=45.0
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCCh-------hHHHHHHHh-cCCCeEEEEeCCCccc
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDN-------TKLRNVLIA-TENKSILAVEDIDCSI 95 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~-------~~l~~~~~~-~~~~~Il~lDeid~l~ 95 (192)
..+++|+||||||||+++.+++... |..+..++...+... ..+...+.. ...+.+++|||++...
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLP 177 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccCC
Confidence 3569999999999999999998764 666666665443210 122333433 3467899999998753
No 220
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.59 E-value=5.1e-07 Score=77.77 Aligned_cols=126 Identities=16% Similarity=0.126 Sum_probs=78.0
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEeecCCCCChhHH---------------------HHHHHh---
Q 040463 29 AWKRGYLLYSPPRTGKSSLTAAMANYLN-----FDVCDLELTTLRDNTKL---------------------RNVLIA--- 79 (192)
Q Consensus 29 ~~~~~ilL~GppGtGKt~l~~~ia~~~~-----~~~~~i~~~~~~~~~~l---------------------~~~~~~--- 79 (192)
..+.++++.|-||||||.+...+-..++ ...++++|.++.....+ ...|..
T Consensus 173 ~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~ 252 (529)
T KOG2227|consen 173 NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTK 252 (529)
T ss_pred ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh
Confidence 3445799999999999988876666552 24578999887542211 111111
Q ss_pred -cCCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe-
Q 040463 80 -TENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT- 157 (192)
Q Consensus 80 -~~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t- 157 (192)
...+.++++||+|.+.. . ...++..+ .+++.+. ..++++++
T Consensus 253 q~k~~~llVlDEmD~L~t--r-------------------------~~~vLy~l-Fewp~lp---------~sr~iLiGi 295 (529)
T KOG2227|consen 253 QSKFMLLLVLDEMDHLIT--R-------------------------SQTVLYTL-FEWPKLP---------NSRIILIGI 295 (529)
T ss_pred cccceEEEEechhhHHhh--c-------------------------ccceeeee-hhcccCC---------cceeeeeee
Confidence 12478999999999975 1 11122222 1223333 34566666
Q ss_pred ----CCccccc---c-CCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 158 ----DLTLNLL---L-RPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 158 ----~~l~~~l---~-~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
+..|..| . +-+.-+..+.|++++.+|..+|++.-
T Consensus 296 ANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~r 337 (529)
T KOG2227|consen 296 ANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQR 337 (529)
T ss_pred hhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHH
Confidence 2222222 2 23355778999999999999999764
No 221
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.54 E-value=7.8e-07 Score=75.87 Aligned_cols=127 Identities=18% Similarity=0.176 Sum_probs=78.0
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecC-----------------------CCC---------------Chh--
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELT-----------------------TLR---------------DNT-- 71 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~-----------------------~~~---------------~~~-- 71 (192)
.|+|+-|+.||||||++|+++..+.--.+...|. ++. ..+
T Consensus 39 ggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrv 118 (423)
T COG1239 39 GGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRL 118 (423)
T ss_pred ceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccchhhh
Confidence 4799999999999999999999883211111110 000 011
Q ss_pred ----HHHHHHHhc-----------CCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhh
Q 040463 72 ----KLRNVLIAT-----------ENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFI 136 (192)
Q Consensus 72 ----~l~~~~~~~-----------~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l 136 (192)
.+.+.+..- +..+|+++||++.|.+ .+.+.|++.+
T Consensus 119 vGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d------------------------------~lvd~LLd~a 168 (423)
T COG1239 119 VGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDD------------------------------HLVDALLDVA 168 (423)
T ss_pred ccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccH------------------------------HHHHHHHHHH
Confidence 122222211 2568999999999865 5677777776
Q ss_pred cCccccccccCCC---cceEEEEe------CCccccccCCCcceeEEEecCC-CHHHHHHHHHh
Q 040463 137 DGVCRAVEMRGSQ---YSQLIIKT------DLTLNLLLRPGCMDMHIHMSYC-TPCGLKMLASN 190 (192)
Q Consensus 137 ~~~~~~~~~~~~~---~~~iiv~t------~~l~~~l~~~~rf~~~i~~~~p-~~~~r~~i~~~ 190 (192)
..-+...+-.|.. ..++++++ ..|-|.|+. ||+..|.+.+| +.++|.+|+.+
T Consensus 169 aeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~Ii~r 230 (423)
T COG1239 169 AEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVEIIRR 230 (423)
T ss_pred HhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHHHHHH
Confidence 5432111111110 34455444 577788888 99999988755 56777777764
No 222
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.53 E-value=1.3e-06 Score=76.45 Aligned_cols=64 Identities=14% Similarity=0.155 Sum_probs=49.0
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhC---CcEEEeecCCCCChhHHHHHHHh------------------cCCCeEEEEeC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLN---FDVCDLELTTLRDNTKLRNVLIA------------------TENKSILAVED 90 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~---~~~~~i~~~~~~~~~~l~~~~~~------------------~~~~~Il~lDe 90 (192)
..+++.|++||||+++|+++..... .+++.++|..+.. ..+...++. .+.++.|||||
T Consensus 162 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~-~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~ 240 (469)
T PRK10923 162 ISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPK-DLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 (469)
T ss_pred CeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCH-HHHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEec
Confidence 4599999999999999999998763 6899999998743 334444422 12467899999
Q ss_pred CCcccc
Q 040463 91 IDCSIN 96 (192)
Q Consensus 91 id~l~~ 96 (192)
++.+..
T Consensus 241 i~~l~~ 246 (469)
T PRK10923 241 IGDMPL 246 (469)
T ss_pred cccCCH
Confidence 999865
No 223
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.53 E-value=1.4e-06 Score=71.06 Aligned_cols=118 Identities=16% Similarity=0.110 Sum_probs=63.6
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHH--hCCc---EEEeecCCCCChh------------------------HHHHHHHhc-
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANY--LNFD---VCDLELTTLRDNT------------------------KLRNVLIAT- 80 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~--~~~~---~~~i~~~~~~~~~------------------------~l~~~~~~~- 80 (192)
..-+.|+|++|+|||++|..+++. ...+ ++.++.+.-.... .+.+.+...
T Consensus 19 ~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L 98 (287)
T PF00931_consen 19 VRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELL 98 (287)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHH
T ss_pred eEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence 345889999999999999999987 3322 3344443322211 111111111
Q ss_pred -CCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe--
Q 040463 81 -ENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-- 157 (192)
Q Consensus 81 -~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-- 157 (192)
.++++|+||+++... .+..+...+..... ..+||+.|
T Consensus 99 ~~~~~LlVlDdv~~~~--------------------------------~~~~l~~~~~~~~~--------~~kilvTTR~ 138 (287)
T PF00931_consen 99 KDKRCLLVLDDVWDEE--------------------------------DLEELREPLPSFSS--------GSKILVTTRD 138 (287)
T ss_dssp CCTSEEEEEEEE-SHH--------------------------------HH-------HCHHS--------S-EEEEEESC
T ss_pred ccccceeeeeeecccc--------------------------------cccccccccccccc--------cccccccccc
Confidence 258999999987742 12222222222211 34677777
Q ss_pred CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 158 DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 158 ~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
..+-..... -...++++..+.++-.++++.+
T Consensus 139 ~~v~~~~~~---~~~~~~l~~L~~~ea~~L~~~~ 169 (287)
T PF00931_consen 139 RSVAGSLGG---TDKVIELEPLSEEEALELFKKR 169 (287)
T ss_dssp GGGGTTHHS---CEEEEECSS--HHHHHHHHHHH
T ss_pred ccccccccc---cccccccccccccccccccccc
Confidence 223222221 1568999999999999998754
No 224
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.52 E-value=2.6e-07 Score=73.83 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=23.2
Q ss_pred cCCCCcc--EEEEcCCCCcHHHHHHHHHHHh
Q 040463 27 GRAWKRG--YLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 27 ~~~~~~~--ilL~GppGtGKt~l~~~ia~~~ 55 (192)
.+....| +-|.||+|||||||.+.+|...
T Consensus 23 ~L~v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 23 NLSVEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3343444 7789999999999999999865
No 225
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.51 E-value=8.4e-07 Score=72.04 Aligned_cols=117 Identities=11% Similarity=0.175 Sum_probs=82.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh-C--Cc--------------------------EEEeecCCCCCh--hHHHHHHHhcC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL-N--FD--------------------------VCDLELTTLRDN--TKLRNVLIATE 81 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~-~--~~--------------------------~~~i~~~~~~~~--~~l~~~~~~~~ 81 (192)
.+++|||+|+||-|.+-++-+++ | .+ .++++.++.+-. --++.+++..+
T Consensus 36 Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevA 115 (351)
T KOG2035|consen 36 HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVA 115 (351)
T ss_pred eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHH
Confidence 69999999999999999988876 1 11 112222222211 12334444432
Q ss_pred ----------C-CeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCc
Q 040463 82 ----------N-KSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQY 150 (192)
Q Consensus 82 ----------~-~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~ 150 (192)
+ --+++|.|+|.+-. ....+|-..|+....+.
T Consensus 116 Qt~qie~~~qr~fKvvvi~ead~LT~------------------------------dAQ~aLRRTMEkYs~~~------- 158 (351)
T KOG2035|consen 116 QTQQIETQGQRPFKVVVINEADELTR------------------------------DAQHALRRTMEKYSSNC------- 158 (351)
T ss_pred hhcchhhccccceEEEEEechHhhhH------------------------------HHHHHHHHHHHHHhcCc-------
Confidence 2 36889999999854 46688888898887644
Q ss_pred ceEEEEe---CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 151 SQLIIKT---DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 151 ~~iiv~t---~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
|+|+++ +.+-+.+++ |+ ..|++|.|+.++...+++.
T Consensus 159 -RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~ 197 (351)
T KOG2035|consen 159 -RLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSK 197 (351)
T ss_pred -eEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHH
Confidence 788888 777788888 77 4699999999998877764
No 226
>PHA02624 large T antigen; Provisional
Probab=98.49 E-value=1.4e-06 Score=77.69 Aligned_cols=127 Identities=17% Similarity=0.193 Sum_probs=72.7
Q ss_pred cCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHHHHHHhcCCCeEEEEeCCCccccccCccccccC
Q 040463 27 GRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRNVLIATENKSILAVEDIDCSINLQGRHSQAKT 106 (192)
Q Consensus 27 ~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~Il~lDeid~l~~~~~~~~~~~~ 106 (192)
|.+.++.++|+||||||||+++.++++.++-.++.++... +.+.=.+.-+...-+.+|||+-.-.- ....- .
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt----~ks~FwL~pl~D~~~~l~dD~t~~~~--~~~~L-p- 498 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP----DKLNFELGCAIDQFMVVFEDVKGQPA--DNKDL-P- 498 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCc----chhHHHhhhhhhceEEEeeecccccc--ccccC-C-
Confidence 5677778999999999999999999999965566676443 12221222223457888998864432 00000 0
Q ss_pred CCCCCCCCCCCcccCCCCCcchHHHHHHhhcCc-cccccccC----CCc-ceEEEEe--CCccccccCCCcceeEEEecC
Q 040463 107 LNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGV-CRAVEMRG----SQY-SQLIIKT--DLTLNLLLRPGCMDMHIHMSY 178 (192)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~~~~~~----~~~-~~iiv~t--~~l~~~l~~~~rf~~~i~~~~ 178 (192)
.+..-.-+..|-+.+||. .-+-+... .+. ...||.+ ..||..+.- ||...+.|.+
T Consensus 499 ---------------~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ney~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 499 ---------------SGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNEYLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred ---------------cccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecCcccchhHHH--HHHHhccccc
Confidence 001111234455666666 21110000 001 2355555 677888888 9988888764
No 227
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.48 E-value=1.9e-06 Score=75.27 Aligned_cols=64 Identities=16% Similarity=0.158 Sum_probs=48.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCChhHHHHHHHh------------------cCCCeEEEEeC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDNTKLRNVLIA------------------TENKSILAVED 90 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~~~l~~~~~~------------------~~~~~Il~lDe 90 (192)
..+++.|.+||||+++++++.... +.+++.++|..+.. +.+...++. .+.++.|||||
T Consensus 158 ~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~e 236 (463)
T TIGR01818 158 ITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPK-DLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDE 236 (463)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCH-HHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEc
Confidence 458999999999999999998875 46899999998743 334433322 12468899999
Q ss_pred CCcccc
Q 040463 91 IDCSIN 96 (192)
Q Consensus 91 id~l~~ 96 (192)
++.+..
T Consensus 237 i~~l~~ 242 (463)
T TIGR01818 237 IGDMPL 242 (463)
T ss_pred hhhCCH
Confidence 999864
No 228
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=98.44 E-value=7.6e-07 Score=85.32 Aligned_cols=143 Identities=13% Similarity=0.110 Sum_probs=100.4
Q ss_pred CCCCccEEEEcCCCCcHHH-HHHHHHHHhCCcEEEeecCCCCChhHHHHHHHhcC-----------------CCeEEEEe
Q 040463 28 RAWKRGYLLYSPPRTGKSS-LTAAMANYLNFDVCDLELTTLRDNTKLRNVLIATE-----------------NKSILAVE 89 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~-l~~~ia~~~~~~~~~i~~~~~~~~~~l~~~~~~~~-----------------~~~Il~lD 89 (192)
++..++++++||||+|||. .+.++....-..++.++.+.-+....+...+.+.. +..|||+|
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcD 1570 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFCD 1570 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcchhheEEEee
Confidence 4445799999999999996 57888888889999999988877666666666552 24699999
Q ss_pred CCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---CCcccc-cc
Q 040463 90 DIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNL-LL 165 (192)
Q Consensus 90 eid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~~l~~~-l~ 165 (192)
||+.--. ..... +....+..-+-+-.++|.+.+..|+.-.+|++.+ ...|+. .-
T Consensus 1571 eInLp~~--~~y~~--------------------~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~ 1628 (3164)
T COG5245 1571 EINLPYG--FEYYP--------------------PTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVK 1628 (3164)
T ss_pred ccCCccc--cccCC--------------------CceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCc
Confidence 9993211 22222 2234455555566789988777776777888888 444444 22
Q ss_pred CCCcc---eeEEEecCCCHHHHHHHHHhcC
Q 040463 166 RPGCM---DMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 166 ~~~rf---~~~i~~~~p~~~~r~~i~~~~l 192 (192)
-+.|| +..+...+|.-....+|++.+|
T Consensus 1629 ~~eRf~r~~v~vf~~ype~~SL~~Iyea~l 1658 (3164)
T COG5245 1629 YYERFIRKPVFVFCCYPELASLRNIYEAVL 1658 (3164)
T ss_pred cHHHHhcCceEEEecCcchhhHHHHHHHHH
Confidence 23344 4558899999999999887653
No 229
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.44 E-value=9.3e-07 Score=78.10 Aligned_cols=24 Identities=33% Similarity=0.715 Sum_probs=21.2
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
..++|+||||||||++++.++..+
T Consensus 212 ~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 212 HNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred CEEEEEecCCCCHHHHHHHHhccc
Confidence 359999999999999999998754
No 230
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.44 E-value=3.7e-06 Score=65.60 Aligned_cols=81 Identities=25% Similarity=0.276 Sum_probs=47.0
Q ss_pred CChHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCChhHHHHH-
Q 040463 1 MDSNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDNTKLRNV- 76 (192)
Q Consensus 1 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~~~l~~~- 76 (192)
|+++|++.+...+ . +..+-.++.||||||||++++.+...+ +..++.+..+.-. ...+.+.
T Consensus 2 L~~~Q~~a~~~~l----~----------~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~A-a~~L~~~~ 66 (196)
T PF13604_consen 2 LNEEQREAVRAIL----T----------SGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKA-AKELREKT 66 (196)
T ss_dssp S-HHHHHHHHHHH----H----------CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHH-HHHHHHHH
T ss_pred CCHHHHHHHHHHH----h----------cCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHH-HHHHHHhh
Confidence 5677777665532 2 112357788999999999999887766 4566666554421 1222222
Q ss_pred ----------HHhc-----------CCCeEEEEeCCCcccc
Q 040463 77 ----------LIAT-----------ENKSILAVEDIDCSIN 96 (192)
Q Consensus 77 ----------~~~~-----------~~~~Il~lDeid~l~~ 96 (192)
+... ....++++||+..+..
T Consensus 67 ~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~ 107 (196)
T PF13604_consen 67 GIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDS 107 (196)
T ss_dssp TS-EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BH
T ss_pred CcchhhHHHHHhcCCcccccccccCCcccEEEEecccccCH
Confidence 2211 1247999999888754
No 231
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.43 E-value=1.7e-06 Score=73.57 Aligned_cols=67 Identities=15% Similarity=0.235 Sum_probs=42.4
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhCC-cEEEeecCCCCC------------hhHHHHHHHhcCC-CeEEEEeCCCc
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYLNF-DVCDLELTTLRD------------NTKLRNVLIATEN-KSILAVEDIDC 93 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~~~-~~~~i~~~~~~~------------~~~l~~~~~~~~~-~~Il~lDeid~ 93 (192)
.+.++|++||||+|+|||+|...+.+.+.. .-..+-++.++. ..-+..+.....+ -.+|+|||++.
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~~lLcfDEF~V 138 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKESRLLCFDEFQV 138 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCEEEEeeeec
Confidence 345789999999999999999999988754 222233333321 1112222222223 34999999887
Q ss_pred c
Q 040463 94 S 94 (192)
Q Consensus 94 l 94 (192)
-
T Consensus 139 ~ 139 (362)
T PF03969_consen 139 T 139 (362)
T ss_pred c
Confidence 5
No 232
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.41 E-value=8.1e-06 Score=71.73 Aligned_cols=51 Identities=18% Similarity=0.375 Sum_probs=35.6
Q ss_pred HHHHHHHHHhHHHHHHhcCCC-CccEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 040463 10 MDDLERFVKRKEFYRNVGRAW-KRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63 (192)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~~-~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~ 63 (192)
+..+..|+.+-..+ .... .+-+||+||+||||||.++.+++++|..+.+..
T Consensus 91 I~eVk~WL~~~~~~---~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 91 ISEVKQWLKQVAEF---TPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred HHHHHHHHHHHHHh---ccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 44477777721111 1122 234778899999999999999999999888644
No 233
>PHA00729 NTP-binding motif containing protein
Probab=98.40 E-value=9.4e-07 Score=70.22 Aligned_cols=26 Identities=12% Similarity=0.279 Sum_probs=23.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNF 57 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~ 57 (192)
.+++|+|+||||||++|.++++.++.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~ 43 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFW 43 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 37999999999999999999998763
No 234
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.40 E-value=3.3e-07 Score=65.35 Aligned_cols=31 Identities=32% Similarity=0.604 Sum_probs=27.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEeec
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLNFDVCDLEL 64 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~ 64 (192)
|++.||||+||||+++.+|+.++.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 6899999999999999999999888776554
No 235
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.37 E-value=3.9e-06 Score=72.97 Aligned_cols=64 Identities=17% Similarity=0.184 Sum_probs=49.1
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCChhHHHHHHHh------------------cCCCeEEEEeC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDNTKLRNVLIA------------------TENKSILAVED 90 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~~~l~~~~~~------------------~~~~~Il~lDe 90 (192)
..++++|++||||+++|+++.... +.+++.++|..+.. +.+...++. .+.++.|||||
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~ 241 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPE-NLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDE 241 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCCh-HHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEec
Confidence 469999999999999999998875 46799999998753 334443322 12468899999
Q ss_pred CCcccc
Q 040463 91 IDCSIN 96 (192)
Q Consensus 91 id~l~~ 96 (192)
++.+..
T Consensus 242 i~~l~~ 247 (445)
T TIGR02915 242 IGDLPL 247 (445)
T ss_pred hhhCCH
Confidence 999865
No 236
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.33 E-value=1.2e-05 Score=66.15 Aligned_cols=25 Identities=44% Similarity=0.663 Sum_probs=23.5
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
.+.+||.||||||||.+|-++++++
T Consensus 64 GravLlaGppgtGKTAlAlaisqEL 88 (456)
T KOG1942|consen 64 GRAVLLAGPPGTGKTALALAISQEL 88 (456)
T ss_pred CcEEEEecCCCCchhHHHHHHHHHh
Confidence 4689999999999999999999998
No 237
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.33 E-value=1.5e-06 Score=80.71 Aligned_cols=126 Identities=13% Similarity=0.106 Sum_probs=71.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCc-------EEEeecCCCCC-hhHH-HHHHH-----hcCCCeEEEEeCCCcccccc
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFD-------VCDLELTTLRD-NTKL-RNVLI-----ATENKSILAVEDIDCSINLQ 98 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~-------~~~i~~~~~~~-~~~l-~~~~~-----~~~~~~Il~lDeid~l~~~~ 98 (192)
.|||+|+||||||.+++++++..... +..+.+..... .... -.... ..+..++++|||++.+..
T Consensus 494 hVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~-- 571 (915)
T PTZ00111 494 NVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHN-- 571 (915)
T ss_pred eEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhCCH--
Confidence 59999999999999999999865432 22222222110 0000 00000 112468999999999854
Q ss_pred CccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCcccccc-----ccCCCcceEEEEe----------------
Q 040463 99 GRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVE-----MRGSQYSQLIIKT---------------- 157 (192)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~-----~~~~~~~~iiv~t---------------- 157 (192)
.....|+..|+.-.-+-. ..-....+||-++
T Consensus 572 ----------------------------~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~en 623 (915)
T PTZ00111 572 ----------------------------ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIEN 623 (915)
T ss_pred ----------------------------HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccc
Confidence 344556666643211000 0000123444444
Q ss_pred CCccccccCCCcceeE-EEecCCCHHHHHHHHHh
Q 040463 158 DLTLNLLLRPGCMDMH-IHMSYCTPCGLKMLASN 190 (192)
Q Consensus 158 ~~l~~~l~~~~rf~~~-i~~~~p~~~~r~~i~~~ 190 (192)
-.+++.+++ ||+.. +-++.|+.+.=.+|.++
T Consensus 624 i~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~h 655 (915)
T PTZ00111 624 INISPSLFT--RFDLIYLVLDHIDQDTDQLISLS 655 (915)
T ss_pred cCCChHHhh--hhcEEEEecCCCChHHHHHHHHH
Confidence 256888999 99776 56778887776666544
No 238
>PRK15115 response regulator GlrR; Provisional
Probab=98.32 E-value=3.4e-06 Score=73.31 Aligned_cols=64 Identities=19% Similarity=0.193 Sum_probs=48.8
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCChhHHHHHHHh------------------cCCCeEEEEeC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDNTKLRNVLIA------------------TENKSILAVED 90 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~~~l~~~~~~------------------~~~~~Il~lDe 90 (192)
..++++|++||||+++|+++.+.. +.+++.++|..+.. ..+...++. .+.++.|||||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~ 236 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPE-QLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCH-HHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEc
Confidence 459999999999999999998875 47899999998743 333333321 12468999999
Q ss_pred CCcccc
Q 040463 91 IDCSIN 96 (192)
Q Consensus 91 id~l~~ 96 (192)
+|.+..
T Consensus 237 i~~l~~ 242 (444)
T PRK15115 237 IGDMPA 242 (444)
T ss_pred cccCCH
Confidence 999865
No 239
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.30 E-value=1.7e-05 Score=65.45 Aligned_cols=108 Identities=12% Similarity=0.113 Sum_probs=73.8
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCC----------------cEEEeecCC---CCChhHHHHHHHhcC------CCeE
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNF----------------DVCDLELTT---LRDNTKLRNVLIATE------NKSI 85 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~----------------~~~~i~~~~---~~~~~~l~~~~~~~~------~~~I 85 (192)
+..+||+||+|+||+.+|.++|+.+-. .+..+.... ..+-++++++..... ..-|
T Consensus 19 ~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~kv 98 (290)
T PRK05917 19 PSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYKI 98 (290)
T ss_pred CeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCceE
Confidence 347999999999999999999997732 133332221 123445555544443 3469
Q ss_pred EEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---CCccc
Q 040463 86 LAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLN 162 (192)
Q Consensus 86 l~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~~l~~ 162 (192)
++||++|.+-. ...+.|+..++.-+.+ ..+|++| +.+.|
T Consensus 99 ~ii~~ad~mt~------------------------------~AaNaLLK~LEEPp~~--------~~fiL~~~~~~~ll~ 140 (290)
T PRK05917 99 YIIHEADRMTL------------------------------DAISAFLKVLEDPPQH--------GVIILTSAKPQRLPP 140 (290)
T ss_pred EEEechhhcCH------------------------------HHHHHHHHHhhcCCCC--------eEEEEEeCChhhCcH
Confidence 99999999854 5678999999886553 2455555 78888
Q ss_pred cccCCCcceeEEEecCC
Q 040463 163 LLLRPGCMDMHIHMSYC 179 (192)
Q Consensus 163 ~l~~~~rf~~~i~~~~p 179 (192)
.+++ |+ ..+.|+++
T Consensus 141 TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 141 TIRS--RS-LSIHIPME 154 (290)
T ss_pred HHHh--cc-eEEEccch
Confidence 9888 87 45677754
No 240
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.27 E-value=8.6e-06 Score=65.42 Aligned_cols=128 Identities=18% Similarity=0.153 Sum_probs=77.4
Q ss_pred CCCCcc-EEEEcCCCCcHHHHHHHHHHHhCCc---EEEeecCCCCCh--------------------------hHHHHHH
Q 040463 28 RAWKRG-YLLYSPPRTGKSSLTAAMANYLNFD---VCDLELTTLRDN--------------------------TKLRNVL 77 (192)
Q Consensus 28 ~~~~~~-ilL~GppGtGKt~l~~~ia~~~~~~---~~~i~~~~~~~~--------------------------~~l~~~~ 77 (192)
+....| +.++|+.|+|||+++|++..-+.-. ++.++...+... ..+...+
T Consensus 47 i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~ 126 (269)
T COG3267 47 IADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALV 126 (269)
T ss_pred HhcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHH
Confidence 334454 5578999999999999777665422 334444443221 1223333
Q ss_pred HhcCCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe
Q 040463 78 IATENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT 157 (192)
Q Consensus 78 ~~~~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t 157 (192)
.+-.+|.++++||++.+.. ..+..+....+.-.+.. + .-+|+.++
T Consensus 127 ~~g~r~v~l~vdEah~L~~------------------------------~~le~Lrll~nl~~~~~---~--~l~ivL~G 171 (269)
T COG3267 127 KKGKRPVVLMVDEAHDLND------------------------------SALEALRLLTNLEEDSS---K--LLSIVLIG 171 (269)
T ss_pred HhCCCCeEEeehhHhhhCh------------------------------hHHHHHHHHHhhccccc---C--ceeeeecC
Confidence 3445789999999999865 22333332222222211 1 44588888
Q ss_pred -CCccccccCCC------cceeEEEecCCCHHHHHHHHHh
Q 040463 158 -DLTLNLLLRPG------CMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 158 -~~l~~~l~~~~------rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
.++.+.++.+. |++..|.+++.+.++-...+++
T Consensus 172 qp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~ 211 (269)
T COG3267 172 QPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRH 211 (269)
T ss_pred CcccchhhchHHHHhhhheEEEEEecCCcChHHHHHHHHH
Confidence 66776554332 8888899999999966555554
No 241
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.26 E-value=5.2e-06 Score=74.65 Aligned_cols=121 Identities=15% Similarity=0.091 Sum_probs=79.0
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCC--cEEEeecCC----CCChhHHHHHHHhcC-----------CCeEEEEeCCCcc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNF--DVCDLELTT----LRDNTKLRNVLIATE-----------NKSILAVEDIDCS 94 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~--~~~~i~~~~----~~~~~~l~~~~~~~~-----------~~~Il~lDeid~l 94 (192)
.|++|-|++|+|||+++++++..+.. +|..+..+. +.+.-++...+..-. ..+|||+||++.+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~ 105 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERL 105 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccC
Confidence 47999999999999999999998864 555443322 112233444443322 3689999999998
Q ss_pred ccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCC---CcceE-EEEe-------CCcccc
Q 040463 95 INLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGS---QYSQL-IIKT-------DLTLNL 163 (192)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~---~~~~i-iv~t-------~~l~~~ 163 (192)
-+ .+++.|++.|+.-.-.-+-.|. -..++ +|.| ..+++.
T Consensus 106 ~~------------------------------~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~ 155 (584)
T PRK13406 106 EP------------------------------GTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAA 155 (584)
T ss_pred CH------------------------------HHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHH
Confidence 65 6788888887532110000000 02334 4444 237888
Q ss_pred ccCCCcceeEEEecCCCHHHH
Q 040463 164 LLRPGCMDMHIHMSYCTPCGL 184 (192)
Q Consensus 164 l~~~~rf~~~i~~~~p~~~~r 184 (192)
++. ||+..+.+++++..+.
T Consensus 156 lLD--Rf~l~v~v~~~~~~~~ 174 (584)
T PRK13406 156 LAD--RLAFHLDLDGLALRDA 174 (584)
T ss_pred hHh--heEEEEEcCCCChHHh
Confidence 998 9999999999987654
No 242
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.24 E-value=1.4e-06 Score=65.71 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=30.1
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~ 63 (192)
++..|+|+|+||||||++++.+|+.++.+++..+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 4557999999999999999999999999888654
No 243
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.23 E-value=1.1e-05 Score=70.38 Aligned_cols=64 Identities=16% Similarity=0.153 Sum_probs=50.0
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCC---cEEEeecCCCCChhHHHHHHHhc------------------CCCeEEEEeC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNF---DVCDLELTTLRDNTKLRNVLIAT------------------ENKSILAVED 90 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~---~~~~i~~~~~~~~~~l~~~~~~~------------------~~~~Il~lDe 90 (192)
..||++|++||||..+|+++.+...+ ||+.+||..+.. +-+-..++.. +.++.|||||
T Consensus 165 a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~-~l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDE 243 (464)
T COG2204 165 ASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPE-NLLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDE 243 (464)
T ss_pred CCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCH-HHHHHHhhcccccCcCCcccccCcceeEcCCceEEeec
Confidence 46999999999999999999998754 899999999864 2233333332 2578999999
Q ss_pred CCcccc
Q 040463 91 IDCSIN 96 (192)
Q Consensus 91 id~l~~ 96 (192)
|..+.-
T Consensus 244 I~~mpl 249 (464)
T COG2204 244 IGEMPL 249 (464)
T ss_pred cccCCH
Confidence 999743
No 244
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.23 E-value=1.1e-05 Score=70.34 Aligned_cols=64 Identities=17% Similarity=0.184 Sum_probs=48.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCChhHHHHHHHh------------------cCCCeEEEEeC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDNTKLRNVLIA------------------TENKSILAVED 90 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~~~l~~~~~~------------------~~~~~Il~lDe 90 (192)
..++++|++||||+++++++.... +.+++.++|..+.. ..+...++. .+.+++|||||
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~ 245 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPE-SLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDE 245 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCH-HHHHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEec
Confidence 469999999999999999998765 46899999998753 333333322 12467999999
Q ss_pred CCcccc
Q 040463 91 IDCSIN 96 (192)
Q Consensus 91 id~l~~ 96 (192)
++.+..
T Consensus 246 i~~l~~ 251 (457)
T PRK11361 246 IGEMPL 251 (457)
T ss_pred hhhCCH
Confidence 999865
No 245
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=2.6e-06 Score=73.76 Aligned_cols=25 Identities=36% Similarity=0.619 Sum_probs=21.9
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
..++|++||||||||++++.+...+
T Consensus 198 gHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 198 GHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CCcEEEecCCCCchHHhhhhhcccC
Confidence 3579999999999999999987755
No 246
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.21 E-value=7e-06 Score=62.40 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=21.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
.+.+.||+|||||++.+.+|...
T Consensus 31 ~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhcc
Confidence 38999999999999999999876
No 247
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.21 E-value=4.6e-07 Score=74.72 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=75.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCc------EEEeecCCCCChh---HHHHHHHhc---------CCCeEEEEeCCCcc
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFD------VCDLELTTLRDNT---KLRNVLIAT---------ENKSILAVEDIDCS 94 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~------~~~i~~~~~~~~~---~l~~~~~~~---------~~~~Il~lDeid~l 94 (192)
..|+|||||+|||+...+.|+.+..+ +..++.+.-.+-+ +-...|... .....+++||+|..
T Consensus 64 h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaM 143 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM 143 (360)
T ss_pred cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHh
Confidence 79999999999999999999887552 2233444332211 111122222 24679999999996
Q ss_pred ccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---CCccccccCCCcce
Q 040463 95 INLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNLLLRPGCMD 171 (192)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~~l~~~l~~~~rf~ 171 (192)
.. ...+.|-..+..+..+ .++.+++ ..+.|++++ ||.
T Consensus 144 T~------------------------------~AQnALRRviek~t~n--------~rF~ii~n~~~ki~pa~qs--Rct 183 (360)
T KOG0990|consen 144 TR------------------------------DAQNALRRVIEKYTAN--------TRFATISNPPQKIHPAQQS--RCT 183 (360)
T ss_pred hH------------------------------HHHHHHHHHHHHhccc--------eEEEEeccChhhcCchhhc--ccc
Confidence 43 4556666677766543 3566666 788888888 885
Q ss_pred eEEEecCCCHHHHHHHHHh
Q 040463 172 MHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 172 ~~i~~~~p~~~~r~~i~~~ 190 (192)
+ ..|.+.+..+.....++
T Consensus 184 r-frf~pl~~~~~~~r~sh 201 (360)
T KOG0990|consen 184 R-FRFAPLTMAQQTERQSH 201 (360)
T ss_pred c-CCCCCCChhhhhhHHHH
Confidence 5 67777776655544443
No 248
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.20 E-value=4e-06 Score=70.85 Aligned_cols=34 Identities=26% Similarity=0.260 Sum_probs=29.1
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCC-------cEEEeec
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNF-------DVCDLEL 64 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~-------~~~~i~~ 64 (192)
++.++|+|||||||||+|+++++.++. +++.+..
T Consensus 78 r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 78 KQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 456899999999999999999999976 6666655
No 249
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.20 E-value=2.3e-05 Score=75.87 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNF 57 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~ 57 (192)
+-+.++|++|+||||+|+++++.+..
T Consensus 208 ~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 208 RMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 34889999999999999999887643
No 250
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.20 E-value=2.9e-06 Score=71.16 Aligned_cols=53 Identities=25% Similarity=0.387 Sum_probs=43.3
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhC--CcEEEeecCCCCC-----hhHHHHHHHhc
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYLN--FDVCDLELTTLRD-----NTKLRNVLIAT 80 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~~--~~~~~i~~~~~~~-----~~~l~~~~~~~ 80 (192)
.-..++||+.||||||||.+|-++|+.+| .||+.++.+.+-+ .+.+.+.|.++
T Consensus 62 k~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE~L~qa~Rra 121 (450)
T COG1224 62 KMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEALTQALRRA 121 (450)
T ss_pred cccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHHHHHHHHHHHh
Confidence 34457899999999999999999999997 6788888887754 45677777766
No 251
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.19 E-value=1.6e-05 Score=77.54 Aligned_cols=127 Identities=19% Similarity=0.187 Sum_probs=86.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHH-----------------HHHHHhcCCCeEEEEeCCCcc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKL-----------------RNVLIATENKSILAVEDIDCS 94 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l-----------------~~~~~~~~~~~Il~lDeid~l 94 (192)
++++|.|.||+|||+++.++|+..|-..+.++.+...+--.+ .-.+.+.+.+.-+++||++..
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNLa 1623 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINLA 1623 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhhh
Confidence 469999999999999999999999999999998875431100 122333446788899998874
Q ss_pred ccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccc-----cCCCcceEEEEe----------CC
Q 040463 95 INLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEM-----RGSQYSQLIIKT----------DL 159 (192)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~-----~~~~~~~iiv~t----------~~ 159 (192)
. +.++.+|-.++|+-.+.--+ -..-.+..|+++ ..
T Consensus 1624 S------------------------------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKg 1673 (4600)
T COG5271 1624 S------------------------------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKG 1673 (4600)
T ss_pred H------------------------------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCccc
Confidence 3 25667777776543211000 000023456666 68
Q ss_pred ccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 160 TLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 160 l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
+|.+++. ||. .|.+..++.++...|+..+
T Consensus 1674 LPkSF~n--RFs-vV~~d~lt~dDi~~Ia~~~ 1702 (4600)
T COG5271 1674 LPKSFLN--RFS-VVKMDGLTTDDITHIANKM 1702 (4600)
T ss_pred CCHHHhh--hhh-eEEecccccchHHHHHHhh
Confidence 8999998 994 5888888888888877654
No 252
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.17 E-value=5.3e-06 Score=69.18 Aligned_cols=58 Identities=21% Similarity=0.179 Sum_probs=45.5
Q ss_pred CChHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 040463 1 MDSNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63 (192)
Q Consensus 1 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~ 63 (192)
+++++++.+.+.+..++..... ..++..|+|.|++|||||++++.+|..+|.+++.++
T Consensus 108 l~~~~~~~~~~~l~~~~~~~~~-----~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 108 ASPAQLARVRDALSGMLGAGRR-----AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CCHHHHHHHHHHHHHHHhhhhh-----ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 4667777777777776665432 344557999999999999999999999999998654
No 253
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=4.6e-05 Score=62.96 Aligned_cols=114 Identities=16% Similarity=0.169 Sum_probs=75.9
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCC------------------------cEEEeecC-CCCChhHHHHHHHhcC----
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNF------------------------DVCDLELT-TLRDNTKLRNVLIATE---- 81 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~------------------------~~~~i~~~-~~~~~~~l~~~~~~~~---- 81 (192)
+..+||+|| .||+++|+.+|+.+-. .+..+... ...+.+++++......
T Consensus 24 ~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p~ 101 (290)
T PRK07276 24 NHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSGY 101 (290)
T ss_pred ceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCcc
Confidence 347999996 6899999999987621 12222211 1112456666655443
Q ss_pred --CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe--
Q 040463 82 --NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-- 157 (192)
Q Consensus 82 --~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-- 157 (192)
..-|++||++|.+-. ...|.|+..++.-..+ ..+|++|
T Consensus 102 ~~~~kV~II~~ad~m~~------------------------------~AaNaLLKtLEEPp~~--------t~~iL~t~~ 143 (290)
T PRK07276 102 EGKQQVFIIKDADKMHV------------------------------NAANSLLKVIEEPQSE--------IYIFLLTND 143 (290)
T ss_pred cCCcEEEEeehhhhcCH------------------------------HHHHHHHHHhcCCCCC--------eEEEEEECC
Confidence 347999999999854 4678899998876543 2455555
Q ss_pred -CCccccccCCCcceeEEEecCCCHHHHHHHH
Q 040463 158 -DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLA 188 (192)
Q Consensus 158 -~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~ 188 (192)
+.+-|.+++ |+ ..|.|+. +.+...+++
T Consensus 144 ~~~lLpTI~S--Rc-q~i~f~~-~~~~~~~~L 171 (290)
T PRK07276 144 ENKVLPTIKS--RT-QIFHFPK-NEAYLIQLL 171 (290)
T ss_pred hhhCchHHHH--cc-eeeeCCC-cHHHHHHHH
Confidence 788899999 88 6688876 555555554
No 254
>PRK08118 topology modulation protein; Reviewed
Probab=98.16 E-value=2e-06 Score=65.47 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=29.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEeec
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDLEL 64 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~ 64 (192)
.|+++||||+||||+++.+++.++.+++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 48999999999999999999999999887764
No 255
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=1.5e-05 Score=74.10 Aligned_cols=97 Identities=21% Similarity=0.296 Sum_probs=64.5
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCC-------------hhHHHHHHHhcC-C-CeEEEEeCCC
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRD-------------NTKLRNVLIATE-N-KSILAVEDID 92 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~-------------~~~l~~~~~~~~-~-~~Il~lDeid 92 (192)
...++|.||.|+|||-+|+++|..+ .-.++.++++.++. ....-++....+ + .+|++|||||
T Consensus 591 ~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIE 670 (898)
T KOG1051|consen 591 DAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIE 670 (898)
T ss_pred CeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHHHHHHHHhcCCceEEEEechh
Confidence 3458999999999999999999987 34588888886322 122223333333 3 4999999999
Q ss_pred ccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCcccccc-ccCCC-cceEEEEe
Q 040463 93 CSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVE-MRGSQ-YSQLIIKT 157 (192)
Q Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~-~~~~~-~~~iiv~t 157 (192)
.... .+++.|++.+|...-.+. =+..+ ++.|||+|
T Consensus 671 kAh~------------------------------~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMT 707 (898)
T KOG1051|consen 671 KAHP------------------------------DVLNILLQLLDRGRLTDSHGREVDFKNAIFIMT 707 (898)
T ss_pred hcCH------------------------------HHHHHHHHHHhcCccccCCCcEeeccceEEEEe
Confidence 9754 677888888875543220 00001 35688888
No 256
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=4.7e-05 Score=61.75 Aligned_cols=109 Identities=13% Similarity=0.023 Sum_probs=71.3
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhCC----------------------cEEEeecC-CCCChhHHHHHHHhcC-----
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANYLNF----------------------DVCDLELT-TLRDNTKLRNVLIATE----- 81 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~~~~----------------------~~~~i~~~-~~~~~~~l~~~~~~~~----- 81 (192)
.+..+||+||+|+||..+|.++|+.+-. .+..+... .....+++++......
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e 85 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVE 85 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchh
Confidence 3457999999999999999999987621 12221111 0112344454444321
Q ss_pred --CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe--
Q 040463 82 --NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-- 157 (192)
Q Consensus 82 --~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-- 157 (192)
..-|++|+++|.+-. ...+.|+..++.-..+ ..+|++|
T Consensus 86 ~~~~KV~II~~ae~m~~------------------------------~AaNaLLK~LEEPp~~--------t~fiLit~~ 127 (261)
T PRK05818 86 SNGKKIYIIYGIEKLNK------------------------------QSANSLLKLIEEPPKN--------TYGIFTTRN 127 (261)
T ss_pred cCCCEEEEeccHhhhCH------------------------------HHHHHHHHhhcCCCCC--------eEEEEEECC
Confidence 247899999999754 5678899988876543 2344555
Q ss_pred -CCccccccCCCcceeEEEecCC
Q 040463 158 -DLTLNLLLRPGCMDMHIHMSYC 179 (192)
Q Consensus 158 -~~l~~~l~~~~rf~~~i~~~~p 179 (192)
+.+.+.+++ |+- .+.++.+
T Consensus 128 ~~~lLpTI~S--RCq-~~~~~~~ 147 (261)
T PRK05818 128 ENNILNTILS--RCV-QYVVLSK 147 (261)
T ss_pred hHhCchHhhh--hee-eeecCCh
Confidence 789999999 873 4667666
No 257
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.14 E-value=2e-05 Score=65.39 Aligned_cols=117 Identities=14% Similarity=0.132 Sum_probs=80.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCC-------------cEEEeec-CCCCChhHHHHHHHhcC-------CCeEEEEeC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNF-------------DVCDLEL-TTLRDNTKLRNVLIATE-------NKSILAVED 90 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~-------------~~~~i~~-~~~~~~~~l~~~~~~~~-------~~~Il~lDe 90 (192)
...||+|+.|.||+.+++.+++.+-. .+..++. ..-.+.+++++...... ..-|++||+
T Consensus 19 haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~~~~~~~~~KvvII~~ 98 (299)
T PRK07132 19 HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYFSSFVQSQKKILIIKN 98 (299)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhccCCcccCCceEEEEec
Confidence 46889999999999999999998711 1222321 11123456666555442 457999999
Q ss_pred CCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---CCccccccCC
Q 040463 91 IDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNLLLRP 167 (192)
Q Consensus 91 id~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~~l~~~l~~~ 167 (192)
+|.+-. ...+.|+..++.-+.+. .+|++| +.+-+.+++
T Consensus 99 ~e~m~~------------------------------~a~NaLLK~LEEPp~~t--------~~il~~~~~~kll~TI~S- 139 (299)
T PRK07132 99 IEKTSN------------------------------SLLNALLKTIEEPPKDT--------YFLLTTKNINKVLPTIVS- 139 (299)
T ss_pred ccccCH------------------------------HHHHHHHHHhhCCCCCe--------EEEEEeCChHhChHHHHh-
Confidence 988643 45678988888866533 344445 677777777
Q ss_pred CcceeEEEecCCCHHHHHHHHH
Q 040463 168 GCMDMHIHMSYCTPCGLKMLAS 189 (192)
Q Consensus 168 ~rf~~~i~~~~p~~~~r~~i~~ 189 (192)
|+ ..++|++++.++..+.+.
T Consensus 140 -Rc-~~~~f~~l~~~~l~~~l~ 159 (299)
T PRK07132 140 -RC-QVFNVKEPDQQKILAKLL 159 (299)
T ss_pred -Ce-EEEECCCCCHHHHHHHHH
Confidence 77 569999999998876554
No 258
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.12 E-value=1.4e-05 Score=70.69 Aligned_cols=24 Identities=38% Similarity=0.653 Sum_probs=21.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
..++|+||||||||++++.++..+
T Consensus 211 ~~llliG~~GsGKTtLak~L~gll 234 (506)
T PRK09862 211 HNLLLIGPPGTGKTMLASRINGLL 234 (506)
T ss_pred cEEEEECCCCCcHHHHHHHHhccC
Confidence 349999999999999999999765
No 259
>PRK03839 putative kinase; Provisional
Probab=98.10 E-value=3.3e-06 Score=64.62 Aligned_cols=30 Identities=23% Similarity=0.493 Sum_probs=27.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~~~~~~i~ 63 (192)
|+|.|+||+||||+++.+|+.++.+++.++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 789999999999999999999999887654
No 260
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.09 E-value=1.1e-05 Score=60.74 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=21.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
.|++.|+||+||||++..++..+
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHH
Confidence 58999999999999999999887
No 261
>PRK13947 shikimate kinase; Provisional
Probab=98.09 E-value=4e-06 Score=63.44 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=29.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEeec
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDLEL 64 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~ 64 (192)
+|+|.|+||||||++++.+|+.++.+++..+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 59999999999999999999999999987653
No 262
>PF14516 AAA_35: AAA-like domain
Probab=98.09 E-value=0.0001 Score=62.04 Aligned_cols=131 Identities=19% Similarity=0.231 Sum_probs=79.8
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCC-----hh------------------HH------------
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRD-----NT------------------KL------------ 73 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~-----~~------------------~l------------ 73 (192)
.-+.+.||..+|||++...+.+.+ +...+.+++..+.+ .. .+
T Consensus 32 ~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~ 111 (331)
T PF14516_consen 32 SYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKI 111 (331)
T ss_pred CEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChh
Confidence 458899999999999998887766 67777888776532 00 00
Q ss_pred --HHH-----HHhcCCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCcccccc--
Q 040463 74 --RNV-----LIATENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVE-- 144 (192)
Q Consensus 74 --~~~-----~~~~~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~-- 144 (192)
... +....+|.||+|||+|.+.+ .......++..+........
T Consensus 112 ~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~----------------------------~~~~~~dF~~~LR~~~~~~~~~ 163 (331)
T PF14516_consen 112 SCTEYFEEYLLKQIDKPLVLFIDEIDRLFE----------------------------YPQIADDFFGLLRSWYEQRKNN 163 (331)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEechhhhcc----------------------------CcchHHHHHHHHHHHHHhcccC
Confidence 111 11223799999999999975 11233455555544333210
Q ss_pred ccCCCcceEEEEe---CCccccc-cCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 145 MRGSQYSQLIIKT---DLTLNLL-LRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 145 ~~~~~~~~iiv~t---~~l~~~l-~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
..+ ++-+++++. ..+.... .+|.-+...|+++..+.++-..+++.|
T Consensus 164 ~~~-~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~ 213 (331)
T PF14516_consen 164 PIW-QKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRY 213 (331)
T ss_pred ccc-ceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhh
Confidence 000 112233333 1122222 456667778999999999999988764
No 263
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.08 E-value=8.9e-06 Score=72.22 Aligned_cols=49 Identities=24% Similarity=0.411 Sum_probs=35.6
Q ss_pred HHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 10 MDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
++.+..|+...- .+....+-+||+||||||||++++.+|++++..+.+.
T Consensus 28 v~eV~~wl~~~~----~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 28 VEEVRSWLEEMF----SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred HHHHHHHHHHHh----ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 344667766421 1233334577899999999999999999999888764
No 264
>PRK00625 shikimate kinase; Provisional
Probab=98.07 E-value=4.3e-06 Score=64.05 Aligned_cols=32 Identities=28% Similarity=0.463 Sum_probs=29.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEeec
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDLEL 64 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~ 64 (192)
+|+|+|.||+||||+++.+|+.++.++++++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~ 33 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDD 33 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhH
Confidence 58999999999999999999999999988763
No 265
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.07 E-value=1.3e-05 Score=59.16 Aligned_cols=63 Identities=14% Similarity=0.322 Sum_probs=41.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCC-----------------------------hhHH---HHHHH
Q 040463 34 YLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRD-----------------------------NTKL---RNVLI 78 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~-----------------------------~~~l---~~~~~ 78 (192)
++++||||+|||+++..++... +.+++.++...... .... ...+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6789999999999999998876 45555554432211 0111 11222
Q ss_pred hcCCCeEEEEeCCCcccc
Q 040463 79 ATENKSILAVEDIDCSIN 96 (192)
Q Consensus 79 ~~~~~~Il~lDeid~l~~ 96 (192)
...++.++++||+..+..
T Consensus 82 ~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 82 ERGGDDLIILDELTRLVR 99 (165)
T ss_pred hCCCCEEEEEEcHHHHHH
Confidence 334689999999998864
No 266
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.07 E-value=3.6e-06 Score=61.59 Aligned_cols=28 Identities=36% Similarity=0.536 Sum_probs=24.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLNFDVCD 61 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~~~~~~ 61 (192)
|+++||||+||||+++.+++.++..++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i~ 29 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVIS 29 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEe
Confidence 6889999999999999999999855544
No 267
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.06 E-value=3.1e-05 Score=67.14 Aligned_cols=64 Identities=17% Similarity=0.198 Sum_probs=49.2
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCChhHHHHHHHh------------------cCCCeEEEEeC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDNTKLRNVLIA------------------TENKSILAVED 90 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~~~l~~~~~~------------------~~~~~Il~lDe 90 (192)
..++++|.+||||+++++++.... +.+++.++|..+.. +.+...++. .+.++.|||||
T Consensus 163 ~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~lde 241 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNE-SLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 (441)
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCH-HHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEec
Confidence 459999999999999999998765 46899999998653 444444322 12468899999
Q ss_pred CCcccc
Q 040463 91 IDCSIN 96 (192)
Q Consensus 91 id~l~~ 96 (192)
++.+..
T Consensus 242 i~~l~~ 247 (441)
T PRK10365 242 IGDISP 247 (441)
T ss_pred cccCCH
Confidence 999865
No 268
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=98.06 E-value=4.3e-06 Score=62.03 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=29.2
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~ 63 (192)
.+||+.|-|||||||++..+|..++.+++.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 48999999999999999999999999887664
No 269
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.05 E-value=5.4e-06 Score=61.43 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=28.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~ 63 (192)
+|+|+|+||+|||++++.+|..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999888655
No 270
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.04 E-value=2.3e-05 Score=64.45 Aligned_cols=86 Identities=13% Similarity=0.106 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCC-----cEE--EeecCCCCChh------
Q 040463 5 MKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNF-----DVC--DLELTTLRDNT------ 71 (192)
Q Consensus 5 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~-----~~~--~i~~~~~~~~~------ 71 (192)
+++.+...+..++.++. ..+|--+=|+|++||||+++++.+|+.+-. +++ .+....+...+
T Consensus 90 a~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Yk 163 (344)
T KOG2170|consen 90 AKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDYK 163 (344)
T ss_pred HHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHHH
Confidence 34455555555555431 223334558999999999999999998732 222 12222222222
Q ss_pred -HHHHHHHh---cCCCeEEEEeCCCcccc
Q 040463 72 -KLRNVLIA---TENKSILAVEDIDCSIN 96 (192)
Q Consensus 72 -~l~~~~~~---~~~~~Il~lDeid~l~~ 96 (192)
++++.+.. ....+|+++||+|.+-+
T Consensus 164 ~eL~~~v~~~v~~C~rslFIFDE~DKmp~ 192 (344)
T KOG2170|consen 164 EELKNRVRGTVQACQRSLFIFDEVDKLPP 192 (344)
T ss_pred HHHHHHHHHHHHhcCCceEEechhhhcCH
Confidence 22222221 23678999999999854
No 271
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.03 E-value=6.7e-05 Score=62.69 Aligned_cols=123 Identities=16% Similarity=0.136 Sum_probs=71.9
Q ss_pred CccEEEEcCCCCcHHHHHHHH---HHHhCCcEEEeecCCCCCh------------------------------hHHHHHH
Q 040463 31 KRGYLLYSPPRTGKSSLTAAM---ANYLNFDVCDLELTTLRDN------------------------------TKLRNVL 77 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~i---a~~~~~~~~~i~~~~~~~~------------------------------~~l~~~~ 77 (192)
..++++.||.|+|||+++... ++..+-+++.+........ +.+...+
T Consensus 49 snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L 128 (408)
T KOG2228|consen 49 SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEAL 128 (408)
T ss_pred CCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHH
Confidence 357999999999999765443 3366777776655443211 1112222
Q ss_pred HhcC----CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceE
Q 040463 78 IATE----NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQL 153 (192)
Q Consensus 78 ~~~~----~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~i 153 (192)
.... .++|+++||+|.+++ ...... +.+.+|-.... +..|
T Consensus 129 ~~~~~~t~~~ViFIldEfDlf~~--------------------------h~rQtl---lYnlfDisqs~-------r~Pi 172 (408)
T KOG2228|consen 129 KKGDETTSGKVIFILDEFDLFAP--------------------------HSRQTL---LYNLFDISQSA-------RAPI 172 (408)
T ss_pred hcCCCCCCceEEEEeehhhcccc--------------------------chhhHH---HHHHHHHHhhc-------CCCe
Confidence 2211 357888899999876 112223 33444433321 2234
Q ss_pred EEEe--------CCccccccCCCcceeE-EEe-cCCCHHHHHHHHHhc
Q 040463 154 IIKT--------DLTLNLLLRPGCMDMH-IHM-SYCTPCGLKMLASNY 191 (192)
Q Consensus 154 iv~t--------~~l~~~l~~~~rf~~~-i~~-~~p~~~~r~~i~~~~ 191 (192)
.+++ +.++....+ ||.+. |.+ |+.+.++...+++..
T Consensus 173 ciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~l 218 (408)
T KOG2228|consen 173 CIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKL 218 (408)
T ss_pred EEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHH
Confidence 4444 778888888 99776 544 455677777776654
No 272
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.01 E-value=7.4e-05 Score=63.27 Aligned_cols=124 Identities=15% Similarity=0.214 Sum_probs=75.5
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCCh----------------------------hHHHHHHHh---
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDN----------------------------TKLRNVLIA--- 79 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~----------------------------~~l~~~~~~--- 79 (192)
|..+.|||..|||||++++.+-++++.+.+.+++-....- ......+..
T Consensus 30 PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~ 109 (438)
T KOG2543|consen 30 PSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPA 109 (438)
T ss_pred ceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHH
Confidence 4457999999999999999999999988888777544220 011122222
Q ss_pred c-C--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEE
Q 040463 80 T-E--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIK 156 (192)
Q Consensus 80 ~-~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~ 156 (192)
+ + ....|++|.+|.+.+ -....+..++..-.-+..+ .+.++
T Consensus 110 ~t~~d~~~~liLDnad~lrD---------------------------~~a~ll~~l~~L~el~~~~---------~i~ii 153 (438)
T KOG2543|consen 110 ATNRDQKVFLILDNADALRD---------------------------MDAILLQCLFRLYELLNEP---------TIVII 153 (438)
T ss_pred hhccCceEEEEEcCHHhhhc---------------------------cchHHHHHHHHHHHHhCCC---------ceEEE
Confidence 1 1 367899999999864 2233444444332222211 23333
Q ss_pred e-CCcc--ccccCCCcc-eeEEEecCCCHHHHHHHHHh
Q 040463 157 T-DLTL--NLLLRPGCM-DMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 157 t-~~l~--~~l~~~~rf-~~~i~~~~p~~~~r~~i~~~ 190 (192)
. .... .-..+-|.+ ...++||.|+.++-.+|+.+
T Consensus 154 ls~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 154 LSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred EeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 3 2222 222223443 34589999999999999864
No 273
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.00 E-value=5.4e-06 Score=63.14 Aligned_cols=33 Identities=27% Similarity=0.308 Sum_probs=30.2
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeec
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLEL 64 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~ 64 (192)
.+|+|+|++|+||||+.+++|+.++.+|++.+.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~ 35 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ 35 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchH
Confidence 469999999999999999999999999998753
No 274
>PRK13949 shikimate kinase; Provisional
Probab=98.00 E-value=6.3e-06 Score=62.82 Aligned_cols=32 Identities=28% Similarity=0.392 Sum_probs=29.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEeec
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDLEL 64 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~ 64 (192)
.|+|+|+||+|||++++.+|+.++.+++..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~ 34 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDF 34 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeecccH
Confidence 58999999999999999999999999887663
No 275
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.00 E-value=4.9e-05 Score=62.58 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=27.1
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh----C-CcEEEeecCC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL----N-FDVCDLELTT 66 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~----~-~~~~~i~~~~ 66 (192)
..++|+||+|+||||++..+|.++ + ..+..+++..
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 358899999999999999998865 3 4566666655
No 276
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.99 E-value=0.00014 Score=62.53 Aligned_cols=65 Identities=20% Similarity=0.374 Sum_probs=42.0
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhC-------CcEEEeecCCCC--Ch--------------------hHHHHHHHhcC
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLN-------FDVCDLELTTLR--DN--------------------TKLRNVLIATE 81 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~-------~~~~~i~~~~~~--~~--------------------~~l~~~~~~~~ 81 (192)
+..++|+||+|+||||.+..+|..+. ..+..+++..+. .. ..+...+....
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 34588999999999999999988652 344444444432 11 23333344444
Q ss_pred CCeEEEEeCCCccc
Q 040463 82 NKSILAVEDIDCSI 95 (192)
Q Consensus 82 ~~~Il~lDeid~l~ 95 (192)
...++++|.+....
T Consensus 254 ~~DlVLIDTaGr~~ 267 (388)
T PRK12723 254 DFDLVLVDTIGKSP 267 (388)
T ss_pred CCCEEEEcCCCCCc
Confidence 56788888887753
No 277
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.99 E-value=7.3e-06 Score=62.70 Aligned_cols=29 Identities=17% Similarity=0.329 Sum_probs=25.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
|+++||||+||||+++.+|..++...+..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is~ 30 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLSA 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 68899999999999999999998766554
No 278
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.99 E-value=0.00019 Score=61.91 Aligned_cols=64 Identities=20% Similarity=0.284 Sum_probs=43.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC-hhHH---HHHHHhcC--CCeEEEEeCCCcccc
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD-NTKL---RNVLIATE--NKSILAVEDIDCSIN 96 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~-~~~l---~~~~~~~~--~~~Il~lDeid~l~~ 96 (192)
-++++||.+|||||+++.+...+.-..+.++..+... ...+ ...+.... +...+|||||+.+-+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v~~ 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNVPD 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCchh
Confidence 7889999999999999888888765555555555432 2222 22222222 348999999999743
No 279
>PRK14532 adenylate kinase; Provisional
Probab=97.99 E-value=7.3e-06 Score=63.13 Aligned_cols=30 Identities=17% Similarity=0.355 Sum_probs=26.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
.|++.||||+||||+++.+|+.++..++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 488999999999999999999999877654
No 280
>PRK14531 adenylate kinase; Provisional
Probab=97.97 E-value=9.1e-06 Score=62.56 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=27.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
..|+++||||+||||+++.+|+.+|.+.+..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 3589999999999999999999999887654
No 281
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.96 E-value=1.5e-05 Score=57.69 Aligned_cols=45 Identities=11% Similarity=0.050 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 5 MKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 5 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
+.+.+.+.+..++..+ ...+|.-+-|+|+||||||++++.+|+++
T Consensus 33 a~~~v~~ai~~~l~~~------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 33 AVEVVVNAIKGHLANP------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHHHHHHHHHHHcCC------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4566777777776543 12233345589999999999999999986
No 282
>PRK07261 topology modulation protein; Provisional
Probab=97.96 E-value=9.1e-06 Score=62.03 Aligned_cols=31 Identities=23% Similarity=0.301 Sum_probs=27.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEeec
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLNFDVCDLEL 64 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~ 64 (192)
|+++|+||+||||+++.++..++.+++.++.
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 7899999999999999999999888776543
No 283
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.95 E-value=5e-05 Score=59.02 Aligned_cols=110 Identities=15% Similarity=0.186 Sum_probs=52.1
Q ss_pred EEEEcCCCCcHHHHHHHH-H-HHh--CCcEEEeecCCCC--Ch-----------------------hHHHHHHHhcCCCe
Q 040463 34 YLLYSPPRTGKSSLTAAM-A-NYL--NFDVCDLELTTLR--DN-----------------------TKLRNVLIATENKS 84 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~i-a-~~~--~~~~~~i~~~~~~--~~-----------------------~~l~~~~~~~~~~~ 84 (192)
.+++|.||+|||+.|-.. . .++ |.+++. +...+. .. ..-...+.....++
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 467899999999765433 3 333 555553 333111 10 01112222222689
Q ss_pred EEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---CCcc
Q 040463 85 ILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTL 161 (192)
Q Consensus 85 Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~~l~ 161 (192)
+++|||+....+ .+.... ......+..+....-. ...|+++| ..+|
T Consensus 82 liviDEa~~~~~--~r~~~~----------------------~~~~~~~~~l~~hRh~-------g~diiliTQ~~~~id 130 (193)
T PF05707_consen 82 LIVIDEAQNFFP--SRSWKG----------------------KKVPEIIEFLAQHRHY-------GWDIILITQSPSQID 130 (193)
T ss_dssp EEEETTGGGTSB-----T-T--------------------------HHHHGGGGCCCT-------T-EEEEEES-GGGB-
T ss_pred EEEEECChhhcC--CCcccc----------------------ccchHHHHHHHHhCcC-------CcEEEEEeCCHHHHh
Confidence 999999999987 433210 0112233334333211 34688999 7889
Q ss_pred ccccCCCcceeEEEec
Q 040463 162 NLLLRPGCMDMHIHMS 177 (192)
Q Consensus 162 ~~l~~~~rf~~~i~~~ 177 (192)
+.++. +.+.++.+.
T Consensus 131 ~~ir~--lve~~~~~~ 144 (193)
T PF05707_consen 131 KFIRD--LVEYHYHCR 144 (193)
T ss_dssp HHHHC--CEEEEEEEE
T ss_pred HHHHH--HHheEEEEE
Confidence 88887 777766554
No 284
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.94 E-value=7.1e-06 Score=65.14 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=19.8
Q ss_pred ccEEEEcCCCCcHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~ 53 (192)
..+|+||+||+|||++|+.++.
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcCC
Confidence 4599999999999999999974
No 285
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.94 E-value=5.5e-05 Score=63.33 Aligned_cols=69 Identities=13% Similarity=0.183 Sum_probs=43.5
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCC---------------------hhHHHHHH---Hhc
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRD---------------------NTKLRNVL---IAT 80 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~---------------------~~~l~~~~---~~~ 80 (192)
++....++++||||||||+|+-.++... +..++++++..-.. .++....+ ...
T Consensus 52 lp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~ 131 (321)
T TIGR02012 52 LPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRS 131 (321)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhc
Confidence 4444458899999999999987776654 45566665533211 11111222 222
Q ss_pred CCCeEEEEeCCCcccc
Q 040463 81 ENKSILAVEDIDCSIN 96 (192)
Q Consensus 81 ~~~~Il~lDeid~l~~ 96 (192)
..+.++++|.+..+.+
T Consensus 132 ~~~~lIVIDSv~al~~ 147 (321)
T TIGR02012 132 GAVDIIVVDSVAALVP 147 (321)
T ss_pred cCCcEEEEcchhhhcc
Confidence 3688999999998865
No 286
>PRK13948 shikimate kinase; Provisional
Probab=97.93 E-value=1.4e-05 Score=61.76 Aligned_cols=34 Identities=21% Similarity=0.056 Sum_probs=30.8
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~ 63 (192)
.+..|+|.|++||||||+++.+|+.++.++++.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 3467999999999999999999999999998766
No 287
>PRK06217 hypothetical protein; Validated
Probab=97.93 E-value=1.1e-05 Score=62.01 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=27.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~ 63 (192)
.|+|.|+||+||||+++++++.++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999998887654
No 288
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.93 E-value=4.5e-05 Score=62.89 Aligned_cols=66 Identities=20% Similarity=0.263 Sum_probs=50.8
Q ss_pred CccEEEEcCCCCcHHHHHHHHHH------HhCCcEEEeecCCCCChhHHHHHHHhc-----------------CCCeEEE
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMAN------YLNFDVCDLELTTLRDNTKLRNVLIAT-----------------ENKSILA 87 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~------~~~~~~~~i~~~~~~~~~~l~~~~~~~-----------------~~~~Il~ 87 (192)
+.-+||.||.|.|||.+++.+.. .+.-+|+.++|..+.+...+...|--. +.++.+|
T Consensus 208 r~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlf 287 (531)
T COG4650 208 RAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLF 287 (531)
T ss_pred cCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEe
Confidence 34599999999999999998854 346789999999997755554444322 2578999
Q ss_pred EeCCCcccc
Q 040463 88 VEDIDCSIN 96 (192)
Q Consensus 88 lDeid~l~~ 96 (192)
+|||..+..
T Consensus 288 ldeigelga 296 (531)
T COG4650 288 LDEIGELGA 296 (531)
T ss_pred hHhhhhcCc
Confidence 999999864
No 289
>PRK14530 adenylate kinase; Provisional
Probab=97.92 E-value=1.2e-05 Score=63.34 Aligned_cols=30 Identities=20% Similarity=0.356 Sum_probs=27.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
.|+|.||||+||||+++.+|+.++.+++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 689999999999999999999999877743
No 290
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.92 E-value=1.1e-05 Score=62.00 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=26.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
|+++||||+||||+++.+|..++..++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 78999999999999999999998877664
No 291
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.91 E-value=1.3e-05 Score=58.80 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=27.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~~~~~~i~ 63 (192)
|.+.|+||||||++++.+|..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 678999999999999999999999988766
No 292
>PHA02774 E1; Provisional
Probab=97.90 E-value=5.8e-05 Score=67.36 Aligned_cols=58 Identities=24% Similarity=0.357 Sum_probs=40.7
Q ss_pred cCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEE-EeecCCCCChhHHHHHHHhcCCCeEEEEeCC
Q 040463 27 GRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVC-DLELTTLRDNTKLRNVLIATENKSILAVEDI 91 (192)
Q Consensus 27 ~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~-~i~~~~~~~~~~l~~~~~~~~~~~Il~lDei 91 (192)
+.+++++++||||||||||+++-++++.++-.++ .++..+ ..- +.-...--|+++||+
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s----~Fw---Lqpl~d~ki~vlDD~ 488 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS----HFW---LQPLADAKIALLDDA 488 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc----ccc---cchhccCCEEEEecC
Confidence 4566678999999999999999999999864443 455421 111 222223468999998
No 293
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.89 E-value=0.00025 Score=58.97 Aligned_cols=30 Identities=27% Similarity=0.109 Sum_probs=24.9
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHhCCc
Q 040463 29 AWKRGYLLYSPPRTGKSSLTAAMANYLNFD 58 (192)
Q Consensus 29 ~~~~~ilL~GppGtGKt~l~~~ia~~~~~~ 58 (192)
..+..|.|+|+=|+|||++.+.+-+.+...
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 445678999999999999999998887443
No 294
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.88 E-value=1.3e-05 Score=60.31 Aligned_cols=29 Identities=24% Similarity=0.403 Sum_probs=25.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
|++.||+||||||+++.+++.++..++..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~ 29 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEG 29 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeC
Confidence 57899999999999999999998766543
No 295
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.88 E-value=1.5e-05 Score=59.10 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=24.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLNFDVCD 61 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~~~~~~ 61 (192)
++|+|+||+||||+++.+++.++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6789999999999999999998876654
No 296
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.87 E-value=2e-05 Score=61.76 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=16.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 040463 34 YLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~ 55 (192)
.+++||||||||+++..+...+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 7889999999997665555554
No 297
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.87 E-value=5.9e-05 Score=61.05 Aligned_cols=26 Identities=31% Similarity=0.574 Sum_probs=22.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNF 57 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~ 57 (192)
..+++.||+|+|||++++.+++....
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 34999999999999999999998754
No 298
>PRK06696 uridine kinase; Validated
Probab=97.87 E-value=4.7e-05 Score=60.42 Aligned_cols=59 Identities=8% Similarity=0.137 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCC
Q 040463 5 MKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRD 69 (192)
Q Consensus 5 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~ 69 (192)
+++++++.+...+... ....+.-|.+.|++|+||||+++.++..+ |..++.++..++-.
T Consensus 2 ~~~~~~~~la~~~~~~------~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 2 SRKQLIKELAEHILTL------NLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred cHHHHHHHHHHHHHHh------CCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 3455555555544331 12223457788999999999999999998 66777766666544
No 299
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.86 E-value=0.00014 Score=63.70 Aligned_cols=68 Identities=19% Similarity=0.215 Sum_probs=45.5
Q ss_pred cCCCCccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCChhHH----------------------HHHHHhc-
Q 040463 27 GRAWKRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDNTKL----------------------RNVLIAT- 80 (192)
Q Consensus 27 ~~~~~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~~~l----------------------~~~~~~~- 80 (192)
|+.....++|+|+||+|||+++..++... +..+++++...- .+++ .+++...
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees--~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEES--ASQIKLRAERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcccc--HHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 34555458899999999999999998765 566777775432 1122 1111111
Q ss_pred -CCCeEEEEeCCCcccc
Q 040463 81 -ENKSILAVEDIDCSIN 96 (192)
Q Consensus 81 -~~~~Il~lDeid~l~~ 96 (192)
.+|.++++|++..+..
T Consensus 154 ~~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 154 EEKPDLVVIDSIQTMYS 170 (446)
T ss_pred hhCCCEEEEechhhhcc
Confidence 2688999999998754
No 300
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.85 E-value=2.3e-05 Score=59.89 Aligned_cols=34 Identities=32% Similarity=0.508 Sum_probs=30.0
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeec
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLEL 64 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~ 64 (192)
+..|+|.|++|+|||++++.+|..++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3469999999999999999999999999887653
No 301
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.84 E-value=2.9e-05 Score=66.92 Aligned_cols=60 Identities=15% Similarity=0.150 Sum_probs=39.9
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHH-----HHHHhcCCCeEEEEeCCCccc
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLR-----NVLIATENKSILAVEDIDCSI 95 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~-----~~~~~~~~~~Il~lDeid~l~ 95 (192)
+.++++.||+|||||+++.+++.+.-.. + ..+.+.+.+. +.+....+..+|+|||+..+.
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~----s-G~f~T~a~Lf~~L~~~~lg~v~~~DlLI~DEvgylp 273 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILI----S-GGTITVAKLFYNISTRQIGLVGRWDVVAFDEVATLK 273 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHH----c-CCcCcHHHHHHHHHHHHHhhhccCCEEEEEcCCCCc
Confidence 3589999999999999999988762000 0 0222222222 344445578999999999864
No 302
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.84 E-value=0.00012 Score=57.31 Aligned_cols=67 Identities=15% Similarity=0.265 Sum_probs=42.5
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHH-----hCCcEEE-----------eecCCCC-----------ChhHHHHHHHhc
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANY-----LNFDVCD-----------LELTTLR-----------DNTKLRNVLIAT 80 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~-----~~~~~~~-----------i~~~~~~-----------~~~~l~~~~~~~ 80 (192)
+....-++|.||+|+||||+.+.++.. .|.++.. ...+... ....+..++...
T Consensus 22 l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~ 101 (199)
T cd03283 22 MEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKA 101 (199)
T ss_pred EcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhc
Confidence 344446889999999999999999853 3443310 0000000 013456667776
Q ss_pred C--CCeEEEEeCCCcc
Q 040463 81 E--NKSILAVEDIDCS 94 (192)
Q Consensus 81 ~--~~~Il~lDeid~l 94 (192)
. +|.++++||.-.-
T Consensus 102 ~~~~p~llllDEp~~g 117 (199)
T cd03283 102 KKGEPVLFLLDEIFKG 117 (199)
T ss_pred cCCCCeEEEEecccCC
Confidence 7 8999999997653
No 303
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.84 E-value=0.00014 Score=62.15 Aligned_cols=68 Identities=15% Similarity=0.086 Sum_probs=44.2
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCC-----------------------hhHHHHHHHhcC
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRD-----------------------NTKLRNVLIATE 81 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~-----------------------~~~l~~~~~~~~ 81 (192)
+.+..-++++|+||+|||+++..+|... +..+++++...-.. -..+.+.+. ..
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~-~~ 157 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIE-EL 157 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHH-hc
Confidence 4444458899999999999999988765 34676766543110 011222221 12
Q ss_pred CCeEEEEeCCCcccc
Q 040463 82 NKSILAVEDIDCSIN 96 (192)
Q Consensus 82 ~~~Il~lDeid~l~~ 96 (192)
+|.+++||++..+..
T Consensus 158 ~~~lVVIDSIq~l~~ 172 (372)
T cd01121 158 KPDLVIIDSIQTVYS 172 (372)
T ss_pred CCcEEEEcchHHhhc
Confidence 689999999998853
No 304
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.84 E-value=5e-05 Score=64.72 Aligned_cols=47 Identities=21% Similarity=0.313 Sum_probs=33.5
Q ss_pred CChHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCC
Q 040463 1 MDSNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNF 57 (192)
Q Consensus 1 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~ 57 (192)
|+++|++.+-..+..... ..+..+++.||.|||||++.+++...+..
T Consensus 2 Ln~eQ~~~~~~v~~~~~~----------~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIEN----------EEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred CCHHHHHHHHHHHHHHHc----------cCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 567777765554333322 23457899999999999999999988743
No 305
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.84 E-value=5e-05 Score=58.00 Aligned_cols=36 Identities=19% Similarity=0.169 Sum_probs=30.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLR 68 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~ 68 (192)
.+++.|+||+|||++|..++..++.+++++......
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~ 38 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPF 38 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCC
Confidence 378999999999999999999988777777665543
No 306
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.84 E-value=2.3e-05 Score=62.66 Aligned_cols=31 Identities=16% Similarity=0.400 Sum_probs=27.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~ 63 (192)
.|+|.||||+||||+++.+|+.++.+++.+.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 4999999999999999999999998877654
No 307
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.82 E-value=0.0002 Score=56.51 Aligned_cols=40 Identities=18% Similarity=0.101 Sum_probs=29.6
Q ss_pred cCCCCccEEEEcCCCCcHHHHHHHHHHHh---C------CcEEEeecCC
Q 040463 27 GRAWKRGYLLYSPPRTGKSSLTAAMANYL---N------FDVCDLELTT 66 (192)
Q Consensus 27 ~~~~~~~ilL~GppGtGKt~l~~~ia~~~---~------~~~~~i~~~~ 66 (192)
|++...-+.|+||||+|||+++..+|... + ..+++++...
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 45555558899999999999999988753 2 5566666654
No 308
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.82 E-value=2.6e-05 Score=59.10 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=28.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~ 63 (192)
.++|+|++|||||++++.+|+.++.+++..+
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 5899999999999999999999999988754
No 309
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.82 E-value=2.3e-05 Score=59.92 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=26.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
-+++.||||+||||+++.++..+|...+..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 578899999999999999999998776654
No 310
>PRK08233 hypothetical protein; Provisional
Probab=97.82 E-value=0.00014 Score=55.22 Aligned_cols=30 Identities=17% Similarity=0.149 Sum_probs=23.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC-CcEEEe
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLN-FDVCDL 62 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~-~~~~~i 62 (192)
-|.+.|+||+||||+++.++.+++ .+++..
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~ 35 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLKNSKALYF 35 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCceEEE
Confidence 466789999999999999999885 334333
No 311
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.82 E-value=1.5e-05 Score=64.18 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=25.9
Q ss_pred hHHHHHHhcCCCCcc--EEEEcCCCCcHHHHHHHHHHHh
Q 040463 19 RKEFYRNVGRAWKRG--YLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 19 ~~~~~~~~~~~~~~~--ilL~GppGtGKt~l~~~ia~~~ 55 (192)
+....++..+....| +.|.||+||||||+.+.+-+..
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhccc
Confidence 333444444444444 6788999999999999987755
No 312
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.81 E-value=2.1e-05 Score=59.22 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=25.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLNFDVCD 61 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~~~~~~ 61 (192)
|-+.|||||||||+++.+|.++|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5678999999999999999999999876
No 313
>PRK13946 shikimate kinase; Provisional
Probab=97.81 E-value=2.1e-05 Score=60.59 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=30.3
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeec
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLEL 64 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~ 64 (192)
+..|+|.|++|||||++++.+|+.+|.+++..+.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 3579999999999999999999999999887653
No 314
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=97.80 E-value=0.00012 Score=64.61 Aligned_cols=65 Identities=18% Similarity=0.182 Sum_probs=49.2
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhC---CcEEEeecCCCCChhHHHHHHHhc-------------------CCCeEEEE
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLN---FDVCDLELTTLRDNTKLRNVLIAT-------------------ENKSILAV 88 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~---~~~~~i~~~~~~~~~~l~~~~~~~-------------------~~~~Il~l 88 (192)
...|||.|.+||||..+|+++.+... -+|+.+||..+.. .-+-..++.. +..+-|||
T Consensus 268 dstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe-~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFL 346 (560)
T COG3829 268 DSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE-TLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFL 346 (560)
T ss_pred CCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH-HHHHHHHhCcCCccccccccCCCCcceeeccCCeEEe
Confidence 35799999999999999999999774 5899999999863 2222223322 24678999
Q ss_pred eCCCcccc
Q 040463 89 EDIDCSIN 96 (192)
Q Consensus 89 Deid~l~~ 96 (192)
|||..+-.
T Consensus 347 DEIgempl 354 (560)
T COG3829 347 DEIGEMPL 354 (560)
T ss_pred hhhccCCH
Confidence 99999743
No 315
>PLN02200 adenylate kinase family protein
Probab=97.80 E-value=2.9e-05 Score=62.29 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=25.7
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCD 61 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~ 61 (192)
..|++.||||+||||+++.+|++++...+.
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~~~g~~his 73 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVETFGFKHLS 73 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCeEEE
Confidence 347889999999999999999999876543
No 316
>PRK10536 hypothetical protein; Provisional
Probab=97.80 E-value=0.00021 Score=57.92 Aligned_cols=23 Identities=22% Similarity=0.134 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
.-+++.||+|||||+++.+++.+
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35888999999999999999884
No 317
>PRK06762 hypothetical protein; Provisional
Probab=97.79 E-value=3.3e-05 Score=58.18 Aligned_cols=32 Identities=9% Similarity=0.148 Sum_probs=26.0
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~ 63 (192)
.-++++|+||+||||+++.+++.++..+..++
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~ 34 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVS 34 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEec
Confidence 35788999999999999999999865554443
No 318
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.79 E-value=0.00012 Score=61.32 Aligned_cols=69 Identities=13% Similarity=0.186 Sum_probs=44.3
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCC---------------------hhHHHHHH---Hhc
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRD---------------------NTKLRNVL---IAT 80 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~---------------------~~~l~~~~---~~~ 80 (192)
++...-+.++||||||||+++-.++... +..++++++..-.. .++....+ .+.
T Consensus 52 lp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s 131 (325)
T cd00983 52 YPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRS 131 (325)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhc
Confidence 4444447799999999999998877544 55666666543211 11222222 222
Q ss_pred CCCeEEEEeCCCcccc
Q 040463 81 ENKSILAVEDIDCSIN 96 (192)
Q Consensus 81 ~~~~Il~lDeid~l~~ 96 (192)
..+.++++|.+-.+.+
T Consensus 132 ~~~~lIVIDSvaal~~ 147 (325)
T cd00983 132 GAVDLIVVDSVAALVP 147 (325)
T ss_pred cCCCEEEEcchHhhcc
Confidence 3678999999998864
No 319
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.79 E-value=2.2e-05 Score=59.95 Aligned_cols=29 Identities=28% Similarity=0.246 Sum_probs=25.1
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVC 60 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~ 60 (192)
+-|+|.|+||+||||+++.++..++.+++
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~ 31 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWL 31 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCcc
Confidence 35889999999999999999998876554
No 320
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.78 E-value=0.00038 Score=60.01 Aligned_cols=40 Identities=18% Similarity=0.082 Sum_probs=30.9
Q ss_pred cceEEEEe------CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 150 YSQLIIKT------DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 150 ~~~iiv~t------~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
-.+|||+| ..|..++-. |..+.|.++..+.+.-++.+...
T Consensus 183 IAHVIFlT~dv~~~k~LskaLPn--~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 183 IAHVIFLTDDVSYSKPLSKALPN--RVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred ccEEEEECCCCchhhhHHHhCCC--CceeEEeecCCCHHHHHHHHHHH
Confidence 56799999 566777766 77789999999988887766543
No 321
>PRK14528 adenylate kinase; Provisional
Probab=97.78 E-value=2.8e-05 Score=60.10 Aligned_cols=30 Identities=17% Similarity=0.370 Sum_probs=26.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
.+++.||||+||||+++.++..++.+++..
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 589999999999999999999998877654
No 322
>PRK02496 adk adenylate kinase; Provisional
Probab=97.78 E-value=2.5e-05 Score=59.94 Aligned_cols=29 Identities=21% Similarity=0.419 Sum_probs=26.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
+++.||||+||||+++.++..++.+.+..
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 78999999999999999999998877654
No 323
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.78 E-value=0.00032 Score=56.05 Aligned_cols=38 Identities=24% Similarity=0.214 Sum_probs=26.6
Q ss_pred cCCCCccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeec
Q 040463 27 GRAWKRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLEL 64 (192)
Q Consensus 27 ~~~~~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~ 64 (192)
|++....+++.||||||||+++..++... +..+++++.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~ 60 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST 60 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 35555568899999999999976555533 455555553
No 324
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.78 E-value=9.8e-05 Score=58.89 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=21.8
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
.+.|+.|||||||||+.|-+|+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~ 161 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLL 161 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHh
Confidence 368999999999999999999976
No 325
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.77 E-value=2.6e-05 Score=61.27 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=26.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
|++.||||+||||+++.+|..++...+..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 78999999999999999999998877764
No 326
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.77 E-value=9.7e-05 Score=57.73 Aligned_cols=40 Identities=20% Similarity=0.293 Sum_probs=31.6
Q ss_pred cCCCCccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCC
Q 040463 27 GRAWKRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTT 66 (192)
Q Consensus 27 ~~~~~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~ 66 (192)
|++...-++++||||+|||+++..++... +..++++++..
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 45555558899999999999998888654 56788888865
No 327
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.77 E-value=2.9e-05 Score=59.72 Aligned_cols=29 Identities=34% Similarity=0.557 Sum_probs=24.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCD 61 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~ 61 (192)
.|++.||||+||||+|+.+|+.++.+-++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hls 30 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLD 30 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 48899999999999999999997655543
No 328
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.77 E-value=2.1e-05 Score=59.69 Aligned_cols=37 Identities=27% Similarity=0.306 Sum_probs=25.8
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCc---EEEeecCCC
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFD---VCDLELTTL 67 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~---~~~i~~~~~ 67 (192)
+..++++|++|+|||++++++...+..+ ++.+++...
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 4579999999999999999988877444 666666665
No 329
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.76 E-value=4.5e-05 Score=63.96 Aligned_cols=29 Identities=24% Similarity=0.224 Sum_probs=25.0
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhCCc
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANYLNFD 58 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~~~~~ 58 (192)
.++|++|||+-|+|||.|...+...+..+
T Consensus 64 ~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~ 92 (367)
T COG1485 64 PVRGLYLWGGVGRGKTMLMDLFYESLPGE 92 (367)
T ss_pred CCceEEEECCCCccHHHHHHHHHhhCCcc
Confidence 46799999999999999999998877543
No 330
>PLN02199 shikimate kinase
Probab=97.76 E-value=6.2e-05 Score=62.15 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=30.7
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeec
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLEL 64 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~ 64 (192)
..+|+|+|.+|+|||++++.+|+.++.++++.+.
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~ 135 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDT 135 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHH
Confidence 4579999999999999999999999999987653
No 331
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.76 E-value=0.0001 Score=68.92 Aligned_cols=118 Identities=19% Similarity=0.214 Sum_probs=77.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHHHHHHhcC--------------------CCeEEEEeCCCc
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRNVLIATE--------------------NKSILAVEDIDC 93 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~~~~~~~~--------------------~~~Il~lDeid~ 93 (192)
++++||||.|||+.+...|..+|..++..+.+...+...+.+.+..+. .-.||++||+|-
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~ 439 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDG 439 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEecccc
Confidence 589999999999999999999999999999998776555544443321 135999999999
Q ss_pred cccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe-CCccccccCCCccee
Q 040463 94 SINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-DLTLNLLLRPGCMDM 172 (192)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-~~l~~~l~~~~rf~~ 172 (192)
... +.+..+.++....... ...+++++ +.=++..+...+-..
T Consensus 440 ~~~---------------------------~dRg~v~~l~~l~~ks----------~~Piv~~cndr~~p~sr~~~~~~~ 482 (871)
T KOG1968|consen 440 MFG---------------------------EDRGGVSKLSSLCKKS----------SRPLVCTCNDRNLPKSRALSRACS 482 (871)
T ss_pred ccc---------------------------hhhhhHHHHHHHHHhc----------cCCeEEEecCCCCccccchhhhcc
Confidence 864 1122233343333322 22366666 322222222224446
Q ss_pred EEEecCCCHHHHHHHH
Q 040463 173 HIHMSYCTPCGLKMLA 188 (192)
Q Consensus 173 ~i~~~~p~~~~r~~i~ 188 (192)
.++|+.|+.++++.-+
T Consensus 483 ~l~f~kP~~~~i~~ri 498 (871)
T KOG1968|consen 483 DLRFSKPSSELIRSRI 498 (871)
T ss_pred eeeecCCcHHHHHhhh
Confidence 7899999998877544
No 332
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.76 E-value=3.2e-05 Score=61.01 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=26.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
|+++||||+||||+++.+|..++...+.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 88999999999999999999999877764
No 333
>PF13245 AAA_19: Part of AAA domain
Probab=97.75 E-value=5.7e-05 Score=49.96 Aligned_cols=33 Identities=36% Similarity=0.535 Sum_probs=23.6
Q ss_pred EEEEcCCCCcHH-HHHHHHHHHh------CCcEEEeecCC
Q 040463 34 YLLYSPPRTGKS-SLTAAMANYL------NFDVCDLELTT 66 (192)
Q Consensus 34 ilL~GppGtGKt-~l~~~ia~~~------~~~~~~i~~~~ 66 (192)
+++.|||||||| ++++.++... +..++.+.++.
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~ 52 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTR 52 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCH
Confidence 556999999999 6777777766 45566665443
No 334
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.73 E-value=0.00015 Score=57.50 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=29.7
Q ss_pred cCCCCccEEEEcCCCCcHHHHHHHHHHHh----CCcEEEeecCC
Q 040463 27 GRAWKRGYLLYSPPRTGKSSLTAAMANYL----NFDVCDLELTT 66 (192)
Q Consensus 27 ~~~~~~~ilL~GppGtGKt~l~~~ia~~~----~~~~~~i~~~~ 66 (192)
|++.+..+++.||||+|||+++..++... |..+++++...
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee 58 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE 58 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence 56666669999999999999988776543 78888887654
No 335
>PRK14527 adenylate kinase; Provisional
Probab=97.73 E-value=3.2e-05 Score=59.84 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=27.3
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
.+.-++++||||+||||+++.+++.++...+..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 344688999999999999999999988765543
No 336
>PRK06547 hypothetical protein; Provisional
Probab=97.73 E-value=6.3e-05 Score=57.53 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=27.9
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~ 63 (192)
+.-|++.|++|||||++++.+++.++..++..+
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 345778899999999999999999988777554
No 337
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.72 E-value=9.4e-05 Score=63.35 Aligned_cols=23 Identities=35% Similarity=0.637 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
.+++||||+|||++++.+++...
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHH
Confidence 89999999999999999998764
No 338
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.71 E-value=0.00025 Score=54.52 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=21.6
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
..-+.|.||.|+|||||++.++...
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3347799999999999999999865
No 339
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.70 E-value=9.3e-05 Score=58.01 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=22.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCC
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLNF 57 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~~ 57 (192)
|+|.|+||+|||++++.+|+.+..
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHH
Confidence 789999999999999999999843
No 340
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.70 E-value=3.4e-05 Score=55.03 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 040463 34 YLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~ 55 (192)
|+|.|+||+||||+++.+++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 341
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.70 E-value=0.00022 Score=54.44 Aligned_cols=63 Identities=17% Similarity=0.217 Sum_probs=43.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCCh-----------------------hHHHHHHHhcCCCeEEEEeC
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDN-----------------------TKLRNVLIATENKSILAVED 90 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~-----------------------~~l~~~~~~~~~~~Il~lDe 90 (192)
+++.|++|+|||++|..++...+.+++++....-.+. ..+.+.+.....+.+++||-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VLIDc 81 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVLIDC 81 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEEEEc
Confidence 6789999999999999999887777777755543221 13334443333456888888
Q ss_pred CCcccc
Q 040463 91 IDCSIN 96 (192)
Q Consensus 91 id~l~~ 96 (192)
+.....
T Consensus 82 lt~~~~ 87 (169)
T cd00544 82 LTLWVT 87 (169)
T ss_pred HhHHHH
Confidence 777654
No 342
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.69 E-value=0.00015 Score=63.36 Aligned_cols=65 Identities=15% Similarity=0.172 Sum_probs=48.8
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhC---CcEEEeecCCCCC---hhHHH----HHHHhc----------CCCeEEEEeCC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLN---FDVCDLELTTLRD---NTKLR----NVLIAT----------ENKSILAVEDI 91 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~---~~~~~i~~~~~~~---~~~l~----~~~~~~----------~~~~Il~lDei 91 (192)
..|||.|.+||||..+|++|.+... .+++.+||..+.. ++++- ..|-.+ +.++-||+|||
T Consensus 247 ~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEI 326 (550)
T COG3604 247 STVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEI 326 (550)
T ss_pred CeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhcccccccccchhccCcceeecCCCeEechhh
Confidence 4699999999999999999999874 6899999999864 22221 111111 25789999999
Q ss_pred Ccccc
Q 040463 92 DCSIN 96 (192)
Q Consensus 92 d~l~~ 96 (192)
-.+--
T Consensus 327 GelPL 331 (550)
T COG3604 327 GELPL 331 (550)
T ss_pred ccCCH
Confidence 99853
No 343
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.69 E-value=2.8e-05 Score=65.43 Aligned_cols=126 Identities=16% Similarity=0.120 Sum_probs=64.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCC----CC----ChhHHHHHH-----HhcCCCeEEEEeCCCccccccC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTT----LR----DNTKLRNVL-----IATENKSILAVEDIDCSINLQG 99 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~----~~----~~~~l~~~~-----~~~~~~~Il~lDeid~l~~~~~ 99 (192)
.+||+|.||||||.+.+.+++.....++....+. +. ....-.... .-.+..+|++|||+|.+-.
T Consensus 59 hiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~--- 135 (331)
T PF00493_consen 59 HILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKE--- 135 (331)
T ss_dssp -EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--C---
T ss_pred ceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccc---
Confidence 4999999999999999998776655543221111 10 000000000 0112679999999999754
Q ss_pred ccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccC-----CCcceEEEEe----------------C
Q 040463 100 RHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRG-----SQYSQLIIKT----------------D 158 (192)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~-----~~~~~iiv~t----------------~ 158 (192)
.....|...|++-.-+-.-.| ..+..|+-++ -
T Consensus 136 ---------------------------~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni 188 (331)
T PF00493_consen 136 ---------------------------DDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENI 188 (331)
T ss_dssp ---------------------------HHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT
T ss_pred ---------------------------hHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhc
Confidence 334566666654321110000 0012233333 1
Q ss_pred CccccccCCCcceeEEEe-cCCCHHHHHHHHHh
Q 040463 159 LTLNLLLRPGCMDMHIHM-SYCTPCGLKMLASN 190 (192)
Q Consensus 159 ~l~~~l~~~~rf~~~i~~-~~p~~~~r~~i~~~ 190 (192)
.+++.|++ |||-.+.+ ..++.+.-..|.++
T Consensus 189 ~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~ 219 (331)
T PF00493_consen 189 NLPPPLLS--RFDLIFLLRDKPDEEEDERLAEH 219 (331)
T ss_dssp -S-CCCHC--C-SEEECC--TTT-HHHHHHHHH
T ss_pred ccchhhHh--hcCEEEEeccccccccccccceE
Confidence 57888898 99988654 56776655555554
No 344
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.67 E-value=0.00011 Score=66.29 Aligned_cols=65 Identities=18% Similarity=0.235 Sum_probs=41.7
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCC-C-------hhHHHHHHHhc-----CCCeEEEEeCCCcccc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLR-D-------NTKLRNVLIAT-----ENKSILAVEDIDCSIN 96 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~-~-------~~~l~~~~~~~-----~~~~Il~lDeid~l~~ 96 (192)
.+|||+|.||||||-+.+.+++.+..-++.-.-.+-. + ..+-++.+... ...+|..|||+|++..
T Consensus 463 INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~d 540 (804)
T KOG0478|consen 463 INILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSD 540 (804)
T ss_pred ceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEecCccceeeeecCcEEEcCCceEEchhhhhhhH
Confidence 4699999999999999999999886655432221100 0 00111222221 2578999999999854
No 345
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.67 E-value=0.0018 Score=54.05 Aligned_cols=27 Identities=26% Similarity=0.270 Sum_probs=20.7
Q ss_pred CCCccEEEEcCCCCcHHH-HHHHHHHHh
Q 040463 29 AWKRGYLLYSPPRTGKSS-LTAAMANYL 55 (192)
Q Consensus 29 ~~~~~ilL~GppGtGKt~-l~~~ia~~~ 55 (192)
.....++|+|++|||||+ |+++++.+.
T Consensus 21 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~ 48 (309)
T PF10236_consen 21 SKNNRYVLTGERGSGKSVLLAQAVHYAR 48 (309)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 334569999999999995 667776655
No 346
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.66 E-value=0.00037 Score=64.69 Aligned_cols=64 Identities=17% Similarity=0.197 Sum_probs=39.8
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCC----------hhHHHHHHHh-------cCCCeEEEEeCC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRD----------NTKLRNVLIA-------TENKSILAVEDI 91 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~----------~~~l~~~~~~-------~~~~~Il~lDei 91 (192)
.-++|.|+||||||++++++...+ |..+..+..+.... ...+...+.. .....+|++||+
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEa 448 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEA 448 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECc
Confidence 357889999999999999997655 55555543333210 0112222221 124589999998
Q ss_pred Cccc
Q 040463 92 DCSI 95 (192)
Q Consensus 92 d~l~ 95 (192)
..+.
T Consensus 449 sMv~ 452 (744)
T TIGR02768 449 GMVG 452 (744)
T ss_pred ccCC
Confidence 8864
No 347
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.65 E-value=4.3e-05 Score=56.78 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=23.7
Q ss_pred EEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 36 LYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 36 L~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
|.||||+||||+++.+|..++...+.+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~ 27 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISV 27 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEH
T ss_pred CcCCCCCChHHHHHHHHHhcCcceech
Confidence 579999999999999999998766553
No 348
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.64 E-value=0.00022 Score=60.93 Aligned_cols=64 Identities=25% Similarity=0.312 Sum_probs=41.9
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh----C-CcEEEeecCCCC--C--------------------hhHHHHHHHhcCCC
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL----N-FDVCDLELTTLR--D--------------------NTKLRNVLIATENK 83 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~----~-~~~~~i~~~~~~--~--------------------~~~l~~~~~~~~~~ 83 (192)
+..++|+||+|+||||++..+|..+ + ..+..+.+..+. . ...+...+......
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 3458899999999999999998764 3 244445444431 1 12334444544567
Q ss_pred eEEEEeCCCcc
Q 040463 84 SILAVEDIDCS 94 (192)
Q Consensus 84 ~Il~lDeid~l 94 (192)
.+++||.+-..
T Consensus 217 DlVLIDTaG~~ 227 (374)
T PRK14722 217 HMVLIDTIGMS 227 (374)
T ss_pred CEEEEcCCCCC
Confidence 88889987654
No 349
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.64 E-value=0.00098 Score=53.62 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=22.7
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
.+-.+++.|++|||||+++..+-..+.
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~ 38 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLR 38 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 345799999999999999988887664
No 350
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.63 E-value=0.00011 Score=53.93 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=24.6
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCc
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFD 58 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~ 58 (192)
..-++|.|+.|+|||++++.+++.++..
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 3458899999999999999999999864
No 351
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.63 E-value=4.5e-05 Score=57.99 Aligned_cols=30 Identities=20% Similarity=0.375 Sum_probs=26.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~ 63 (192)
.|+++|.||+||||+++.++ .++..++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 47899999999999999999 8888877654
No 352
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.63 E-value=9.7e-05 Score=66.03 Aligned_cols=51 Identities=20% Similarity=0.317 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhHHHHHHhcCC-CCccEEEEcCCCCcHHHHHHHHHHHhCC-cEEEe
Q 040463 8 MKMDDLERFVKRKEFYRNVGRA-WKRGYLLYSPPRTGKSSLTAAMANYLNF-DVCDL 62 (192)
Q Consensus 8 ~l~~~~~~~l~~~~~~~~~~~~-~~~~ilL~GppGtGKt~l~~~ia~~~~~-~~~~i 62 (192)
+.++.+..++.+.- . |.. .+..++|.||||+|||+|++.+|+.+.. +++.+
T Consensus 83 e~ieriv~~l~~Aa--~--gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~ 135 (644)
T PRK15455 83 EAIEQIVSYFRHAA--Q--GLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVL 135 (644)
T ss_pred HHHHHHHHHHHHHH--H--hcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceee
Confidence 44455556664321 1 222 2345788999999999999999998853 33343
No 353
>PRK04182 cytidylate kinase; Provisional
Probab=97.63 E-value=6e-05 Score=57.14 Aligned_cols=28 Identities=21% Similarity=0.451 Sum_probs=26.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLNFDVCD 61 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~~~~~~ 61 (192)
|+|.|++|||||++++.+|+.++.+++.
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 7889999999999999999999988876
No 354
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.62 E-value=0.0014 Score=52.66 Aligned_cols=131 Identities=11% Similarity=0.068 Sum_probs=88.4
Q ss_pred HHHHHHHHhHHHHHHhcCCCCccEEEEcCCC-CcHHHHHHHHHHHhC---------CcEEEeecC-------CCCChhHH
Q 040463 11 DDLERFVKRKEFYRNVGRAWKRGYLLYSPPR-TGKSSLTAAMANYLN---------FDVCDLELT-------TLRDNTKL 73 (192)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~~~~~ilL~GppG-tGKt~l~~~ia~~~~---------~~~~~i~~~-------~~~~~~~l 73 (192)
+.+...+++.++.+ ..|+.|..+ +||..++..+++.+- -.+..+... ...+-+++
T Consensus 3 ~~L~~~iq~~kLsh--------AYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqI 74 (263)
T PRK06581 3 ERLEFNLKHNKLYN--------SWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQI 74 (263)
T ss_pred HHHHHHHHcCcchh--------eeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHH
Confidence 34445555544433 699999997 999999888888762 234444432 12234566
Q ss_pred HHHHHhcC------CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccC
Q 040463 74 RNVLIATE------NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRG 147 (192)
Q Consensus 74 ~~~~~~~~------~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 147 (192)
+++..... +.-|++|+++|.+-. ...+.||..++.-..+
T Consensus 75 ReL~~~l~~~p~~g~~KViII~~ae~mt~------------------------------~AANALLKtLEEPP~~----- 119 (263)
T PRK06581 75 RKLQDFLSKTSAISGYKVAIIYSAELMNL------------------------------NAANSCLKILEDAPKN----- 119 (263)
T ss_pred HHHHHHHhhCcccCCcEEEEEechHHhCH------------------------------HHHHHHHHhhcCCCCC-----
Confidence 66655443 457999999999854 5678899988876543
Q ss_pred CCcceEEEEe---CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 148 SQYSQLIIKT---DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 148 ~~~~~iiv~t---~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
..++++| +.+.|.+++ |+ ..+.++.|+...-.+++..
T Consensus 120 ---t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~~~~~~e~~~~ 159 (263)
T PRK06581 120 ---SYIFLITSRAASIISTIRS--RC-FKINVRSSILHAYNELYSQ 159 (263)
T ss_pred ---eEEEEEeCChhhCchhHhh--ce-EEEeCCCCCHHHHHHHHHH
Confidence 2344455 788999998 88 5688998888766666543
No 355
>PRK04040 adenylate kinase; Provisional
Probab=97.61 E-value=7.4e-05 Score=57.95 Aligned_cols=29 Identities=14% Similarity=0.342 Sum_probs=24.7
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh--CCcEE
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL--NFDVC 60 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~--~~~~~ 60 (192)
.-|+++|+|||||||+++.+++.+ +..++
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 358899999999999999999999 55443
No 356
>PRK01184 hypothetical protein; Provisional
Probab=97.61 E-value=6.5e-05 Score=57.58 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=24.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
-|+|+||||+||||+++ +++.++.+++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 47889999999999987 788888877664
No 357
>PRK04296 thymidine kinase; Provisional
Probab=97.61 E-value=0.00037 Score=54.04 Aligned_cols=30 Identities=20% Similarity=0.169 Sum_probs=22.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCcEEEe
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL---NFDVCDL 62 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i 62 (192)
-.+++||+|+|||+++..++..+ +..++.+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 36789999999999888777765 4555544
No 358
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.61 E-value=0.00037 Score=55.86 Aligned_cols=63 Identities=17% Similarity=0.153 Sum_probs=42.7
Q ss_pred cCCCCccEEEEcCCCCcHHHHHHHHHHH---hCCcEEEeecCCCCChhHHHHHHHhcC--------CCeEEEEeCC
Q 040463 27 GRAWKRGYLLYSPPRTGKSSLTAAMANY---LNFDVCDLELTTLRDNTKLRNVLIATE--------NKSILAVEDI 91 (192)
Q Consensus 27 ~~~~~~~ilL~GppGtGKt~l~~~ia~~---~~~~~~~i~~~~~~~~~~l~~~~~~~~--------~~~Il~lDei 91 (192)
|++....++++||||||||+++..++.. -|.+.++++... +..++.+.+.... ..-+.++|-.
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee--~~~~i~~~~~~~g~~~~~~~~~g~l~~~d~~ 90 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE--HPVQVRRNMAQFGWDVRKYEEEGKFAIVDAF 90 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC--CHHHHHHHHHHhCCCHHHHhhcCCEEEEecc
Confidence 5666666999999999999999876654 267788888654 4455555444433 2346666643
No 359
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.60 E-value=9.2e-05 Score=47.87 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 040463 34 YLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~ 55 (192)
+.+.|+||+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5788999999999999999986
No 360
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.59 E-value=0.00025 Score=57.62 Aligned_cols=27 Identities=19% Similarity=0.078 Sum_probs=23.1
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCC
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNF 57 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~ 57 (192)
...+-|.|++||||||++|.+......
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~p 65 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEP 65 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCC
Confidence 345889999999999999999987753
No 361
>PRK14526 adenylate kinase; Provisional
Probab=97.59 E-value=7.7e-05 Score=58.93 Aligned_cols=28 Identities=25% Similarity=0.552 Sum_probs=25.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLNFDVCD 61 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~~~~~~ 61 (192)
++|+||||+||||+++.+|..++...+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 7899999999999999999998876654
No 362
>PRK09354 recA recombinase A; Provisional
Probab=97.59 E-value=0.00043 Score=58.57 Aligned_cols=69 Identities=13% Similarity=0.192 Sum_probs=43.3
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCC---------------------hhHHH---HHHHhc
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRD---------------------NTKLR---NVLIAT 80 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~---------------------~~~l~---~~~~~~ 80 (192)
++...-+.++||||||||+|+-.++... +..++++++..-.. .++.. ..+...
T Consensus 57 ip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s 136 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRS 136 (349)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhc
Confidence 3444447799999999999998776543 55666666544211 11111 122222
Q ss_pred CCCeEEEEeCCCcccc
Q 040463 81 ENKSILAVEDIDCSIN 96 (192)
Q Consensus 81 ~~~~Il~lDeid~l~~ 96 (192)
..+.++++|-+-.+.+
T Consensus 137 ~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 137 GAVDLIVVDSVAALVP 152 (349)
T ss_pred CCCCEEEEeChhhhcc
Confidence 3678999999998864
No 363
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.58 E-value=0.00055 Score=50.64 Aligned_cols=62 Identities=23% Similarity=0.262 Sum_probs=38.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCc-----------EEEeecCCCCChhHHHHHHHh---cCCCeEEEEeCCCcccc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFD-----------VCDLELTTLRDNTKLRNVLIA---TENKSILAVEDIDCSIN 96 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~-----------~~~i~~~~~~~~~~l~~~~~~---~~~~~Il~lDeid~l~~ 96 (192)
..+.+.||+|+||||+++.++...... +..+. .+ +..+.++.... ..+|.++++||-..-.+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~--~l-S~G~~~rv~laral~~~p~illlDEP~~~LD 102 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFE--QL-SGGEKMRLALAKLLLENPNLLLLDEPTNHLD 102 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEc--cC-CHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 347799999999999999999875321 11111 12 22222222111 23799999999777543
No 364
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.58 E-value=0.00043 Score=64.04 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.0
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
+-++|.|+||||||++++++...+
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~ 362 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELA 362 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 358889999999999999998766
No 365
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.57 E-value=7.6e-05 Score=61.56 Aligned_cols=29 Identities=21% Similarity=0.118 Sum_probs=24.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh-CCcEEE
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL-NFDVCD 61 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~-~~~~~~ 61 (192)
-+++.|+|||||||+++.+++++ +..++.
T Consensus 4 liil~G~pGSGKSTla~~L~~~~~~~~~l~ 33 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKNPKAVNVN 33 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCCCCEEEe
Confidence 57889999999999999999998 555554
No 366
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.57 E-value=0.00023 Score=54.27 Aligned_cols=32 Identities=22% Similarity=0.130 Sum_probs=25.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecC
Q 040463 34 YLLYSPPRTGKSSLTAAMANYL---NFDVCDLELT 65 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~ 65 (192)
++++||||||||+++..++... |..++.++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 6899999999999998887654 6677777654
No 367
>PLN02674 adenylate kinase
Probab=97.57 E-value=0.00018 Score=57.97 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=27.1
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
..|+|.||||+||+|+++.+|+.++...+..
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~his~ 62 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLCHLAT 62 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEch
Confidence 4699999999999999999999998766543
No 368
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.57 E-value=6.8e-05 Score=56.40 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLNFDVC 60 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~~~~~ 60 (192)
|.|+|+||||||||++.++++ |.+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 789999999999999999999 77765
No 369
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.57 E-value=0.00063 Score=53.06 Aligned_cols=64 Identities=16% Similarity=0.253 Sum_probs=39.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH-----hCCcEEE--eecCCC-------------C--------ChhHHHHHHHhcCCC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY-----LNFDVCD--LELTTL-------------R--------DNTKLRNVLIATENK 83 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~-----~~~~~~~--i~~~~~-------------~--------~~~~l~~~~~~~~~~ 83 (192)
.-++|.||.|+|||++.+.++.. .|..+.. .....+ . ...++...+.....|
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~ 109 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSLATPR 109 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHHhccCC
Confidence 34889999999999999999932 2322111 000000 0 012344455555689
Q ss_pred eEEEEeCCCccc
Q 040463 84 SILAVEDIDCSI 95 (192)
Q Consensus 84 ~Il~lDeid~l~ 95 (192)
.++++||.-.-.
T Consensus 110 ~llllDEp~~gl 121 (202)
T cd03243 110 SLVLIDELGRGT 121 (202)
T ss_pred eEEEEecCCCCC
Confidence 999999987744
No 370
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.57 E-value=0.00045 Score=56.03 Aligned_cols=52 Identities=17% Similarity=0.091 Sum_probs=38.9
Q ss_pred cCCCCccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCChhHHHHHHHhc
Q 040463 27 GRAWKRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDNTKLRNVLIAT 80 (192)
Q Consensus 27 ~~~~~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~~~l~~~~~~~ 80 (192)
|++....++++|+||||||+++..++... |.+++.++... +...+.+.+...
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e--~~~~l~~~~~~~ 73 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE--SPEELLENARSF 73 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC--CHHHHHHHHHHc
Confidence 46666679999999999999888877654 67788888766 445666665544
No 371
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=97.56 E-value=8.7e-05 Score=55.84 Aligned_cols=29 Identities=21% Similarity=0.465 Sum_probs=26.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
|.+.|++|+|||++++.+++.++.+++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 77899999999999999999999887654
No 372
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.55 E-value=0.00016 Score=59.26 Aligned_cols=62 Identities=21% Similarity=0.350 Sum_probs=33.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCC-------C---hhHHHHHHHhc-----CCCeEEEEeCCCccc
Q 040463 34 YLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLR-------D---NTKLRNVLIAT-----ENKSILAVEDIDCSI 95 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~-------~---~~~l~~~~~~~-----~~~~Il~lDeid~l~ 95 (192)
|+|+|-||+|||++++.++..+ +..+..++...+. + +...+..+... .+..|+++|+...+-
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYiK 83 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYIK 83 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---SH
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchHH
Confidence 7899999999999999999986 3455555432221 1 22233333222 456899999988763
No 373
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.54 E-value=0.0019 Score=60.75 Aligned_cols=46 Identities=24% Similarity=0.214 Sum_probs=31.0
Q ss_pred HhHHHHHHhcC-CCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeec
Q 040463 18 KRKEFYRNVGR-AWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLEL 64 (192)
Q Consensus 18 ~~~~~~~~~~~-~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~ 64 (192)
.++.+...+.. ...+-+++.||+|.||||++...+...+ ++..++.
T Consensus 18 ~R~rl~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l 64 (903)
T PRK04841 18 VRERLLAKLSGANNYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSL 64 (903)
T ss_pred cchHHHHHHhcccCCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEec
Confidence 34444444432 2234588999999999999999887766 6555554
No 374
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=97.54 E-value=0.0015 Score=55.98 Aligned_cols=33 Identities=27% Similarity=0.346 Sum_probs=25.5
Q ss_pred ccEEEEcCCCCcHH-HHHHHHHHHhCCcEEEeec
Q 040463 32 RGYLLYSPPRTGKS-SLTAAMANYLNFDVCDLEL 64 (192)
Q Consensus 32 ~~ilL~GppGtGKt-~l~~~ia~~~~~~~~~i~~ 64 (192)
.-++|+|+|||||| +|+.+++.+....++.+..
T Consensus 180 ~r~vL~Ge~GtGKSiaL~qa~h~a~~~~wlIlhi 213 (461)
T KOG3928|consen 180 KRFVLDGEPGTGKSIALAQAVHYAADQKWLILHI 213 (461)
T ss_pred eEEEEeCCCCCchhhHHHHHHHHHhcCCeEEEEC
Confidence 34999999999999 7888888877555555443
No 375
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.52 E-value=0.00032 Score=59.75 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
.+++||||||||++++.+++.+.
T Consensus 136 ~LIvG~pGtGKTTLl~~la~~i~ 158 (380)
T PRK12608 136 GLIVAPPRAGKTVLLQQIAAAVA 158 (380)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998773
No 376
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.52 E-value=0.00034 Score=60.18 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
++++||||+|||++++.+++...
T Consensus 171 ~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 171 GLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred EEEECCCCCChhHHHHHHHHhhc
Confidence 89999999999999999999753
No 377
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.52 E-value=0.001 Score=58.39 Aligned_cols=68 Identities=18% Similarity=0.098 Sum_probs=43.8
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCC-----------------------hhHHHHHHHhcC
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRD-----------------------NTKLRNVLIATE 81 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~-----------------------~~~l~~~~~~~~ 81 (192)
+.+..-++++|+||+|||+++..++... +.++++++...-.. ...+.+.+.. .
T Consensus 91 i~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~-~ 169 (454)
T TIGR00416 91 IVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEE-E 169 (454)
T ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHh-c
Confidence 4444458899999999999999887755 34677776543211 0111111111 2
Q ss_pred CCeEEEEeCCCcccc
Q 040463 82 NKSILAVEDIDCSIN 96 (192)
Q Consensus 82 ~~~Il~lDeid~l~~ 96 (192)
+|.+++||.+..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 688999999998753
No 378
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.52 E-value=0.00062 Score=53.94 Aligned_cols=63 Identities=11% Similarity=0.038 Sum_probs=40.0
Q ss_pred cCCCCccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCChhHHHHHHHhcC--------CCeEEEEeCC
Q 040463 27 GRAWKRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDNTKLRNVLIATE--------NKSILAVEDI 91 (192)
Q Consensus 27 ~~~~~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~~~l~~~~~~~~--------~~~Il~lDei 91 (192)
|++....++++||||+|||+++..++.+. +..++.++... ..+++.+...... .+.+.++|++
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~--~~~~i~~~~~~~g~~~~~~~~~~~l~i~d~~ 89 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE--SRESIIRQAAQFGMDFEKAIEEGKLVIIDAL 89 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC--CHHHHHHHHHHhCCCHHHHhhcCCEEEEEcc
Confidence 45555668999999999999998877533 55677776543 3334433322221 3457777754
No 379
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=97.52 E-value=0.0021 Score=52.09 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=21.8
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHH
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
.+..|+|.|.+|+|||++++++...
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~ 54 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGE 54 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 3457999999999999999999874
No 380
>PRK04328 hypothetical protein; Provisional
Probab=97.52 E-value=0.00056 Score=55.27 Aligned_cols=52 Identities=19% Similarity=0.151 Sum_probs=36.6
Q ss_pred cCCCCccEEEEcCCCCcHHHHHHHHHHH---hCCcEEEeecCCCCChhHHHHHHHhc
Q 040463 27 GRAWKRGYLLYSPPRTGKSSLTAAMANY---LNFDVCDLELTTLRDNTKLRNVLIAT 80 (192)
Q Consensus 27 ~~~~~~~ilL~GppGtGKt~l~~~ia~~---~~~~~~~i~~~~~~~~~~l~~~~~~~ 80 (192)
|++....++++||||||||+++..++.. -|.+.++++... +..++.+.+...
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee--~~~~i~~~~~~~ 73 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE--HPVQVRRNMRQF 73 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC--CHHHHHHHHHHc
Confidence 4555666889999999999998877654 256777777655 445566555544
No 381
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.51 E-value=0.00014 Score=57.21 Aligned_cols=24 Identities=33% Similarity=0.300 Sum_probs=18.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
.-+++.||+|||||++|-+.|.+.
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 368889999999999998888755
No 382
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.50 E-value=0.00072 Score=55.45 Aligned_cols=37 Identities=24% Similarity=0.142 Sum_probs=28.0
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCC
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTL 67 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~ 67 (192)
+..+.++||+|+||||++..+|..+ +..+.-+++..+
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 3457788999999999999998876 455665665543
No 383
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.50 E-value=0.00068 Score=50.57 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=21.8
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
.-+.|.||+|+|||+++++++....
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3588999999999999999998763
No 384
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.50 E-value=0.00046 Score=61.02 Aligned_cols=53 Identities=11% Similarity=0.065 Sum_probs=39.7
Q ss_pred cCCCCccEEEEcCCCCcHHHHHHHHHHH----hCCcEEEeecCCCCChhHHHHHHHhcC
Q 040463 27 GRAWKRGYLLYSPPRTGKSSLTAAMANY----LNFDVCDLELTTLRDNTKLRNVLIATE 81 (192)
Q Consensus 27 ~~~~~~~ilL~GppGtGKt~l~~~ia~~----~~~~~~~i~~~~~~~~~~l~~~~~~~~ 81 (192)
|++....+|+.||||||||+++..++.+ .+.+.+++++. ++.+++.+......
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e--E~~~~l~~~~~~~G 73 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE--ESPQDIIKNARSFG 73 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe--cCHHHHHHHHHHcC
Confidence 4666667999999999999999988553 26788888875 45566666655554
No 385
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.50 E-value=0.0011 Score=63.17 Aligned_cols=64 Identities=11% Similarity=0.161 Sum_probs=39.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCC----------ChhHHHHHHHhc-------CCCeEEEEeCCC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLR----------DNTKLRNVLIAT-------ENKSILAVEDID 92 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~----------~~~~l~~~~~~~-------~~~~Il~lDeid 92 (192)
-+++.|++||||||+++++...+ |..++-+..+... ...-+..++... ....+|++||+-
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlIVDEAS 443 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVLVIDEAG 443 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEEEEECcc
Confidence 46789999999999988876654 5555554433321 012233333211 134799999988
Q ss_pred cccc
Q 040463 93 CSIN 96 (192)
Q Consensus 93 ~l~~ 96 (192)
.+..
T Consensus 444 Mv~~ 447 (988)
T PRK13889 444 MVGT 447 (988)
T ss_pred cCCH
Confidence 7643
No 386
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.50 E-value=0.00072 Score=52.83 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=20.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
.-+.+.||+||||||+.+.+|...
T Consensus 32 e~vv~lGpSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 32 ELVVVLGPSGCGKTTLLNLIAGFV 55 (259)
T ss_pred CEEEEEcCCCccHHHHHHHHhcCc
Confidence 348888999999999999999865
No 387
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.49 E-value=0.00052 Score=59.86 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=28.6
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCC
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTL 67 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~ 67 (192)
+..++++|++|+||||++..+|.++ +..+..+++..+
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 4568899999999999999999877 445555555443
No 388
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.49 E-value=0.0004 Score=56.85 Aligned_cols=63 Identities=19% Similarity=0.255 Sum_probs=46.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC----hhHHHHHHHhcC---CCeEEEEeCCCcc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD----NTKLRNVLIATE---NKSILAVEDIDCS 94 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~----~~~l~~~~~~~~---~~~Il~lDeid~l 94 (192)
...||.|.+|+||+++++..|.-.+..++.+..+.--+ .+.++..+..++ +|++++++|-+-.
T Consensus 32 Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~vfll~d~qi~ 101 (268)
T PF12780_consen 32 GHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYSIKDFKEDLKKALQKAGIKGKPTVFLLTDSQIV 101 (268)
T ss_dssp EEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTHHHHHHHHHHHHHHHHHCS-S-EEEEEECCCSS
T ss_pred CCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcCHHHHHHHHHHHHHHHhccCCCeEEEecCcccc
Confidence 45999999999999999999988899999887655332 235556655553 6899999986543
No 389
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.48 E-value=0.00042 Score=54.81 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=31.0
Q ss_pred cCCCCccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecC
Q 040463 27 GRAWKRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELT 65 (192)
Q Consensus 27 ~~~~~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~ 65 (192)
|++...-++++||||+|||+++..+|... +..++++++.
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 45555558899999999999999998754 6778888777
No 390
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.48 E-value=0.00018 Score=53.63 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=25.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEee
Q 040463 34 YLLYSPPRTGKSSLTAAMANYL---NFDVCDLE 63 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~ 63 (192)
++++|+||+|||++++.++..+ +...+.++
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~ 34 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD 34 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 6789999999999999999998 55555554
No 391
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.47 E-value=0.00011 Score=56.55 Aligned_cols=28 Identities=29% Similarity=0.298 Sum_probs=24.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVC 60 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~ 60 (192)
.++|.||+|+||||+++.++...+.++.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 5889999999999999999998776543
No 392
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.47 E-value=0.00094 Score=51.44 Aligned_cols=62 Identities=13% Similarity=0.182 Sum_probs=38.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHH-----hCCcEEE--------------eecCCC-C-C-------hhHHHHHHHhcCCCeE
Q 040463 34 YLLYSPPRTGKSSLTAAMANY-----LNFDVCD--------------LELTTL-R-D-------NTKLRNVLIATENKSI 85 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~-----~~~~~~~--------------i~~~~~-~-~-------~~~l~~~~~~~~~~~I 85 (192)
++|+||.|+|||++.+.++.. .|.++.. +....- . . -.++...+..+..|.+
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 689999999999999999842 2332211 111100 0 0 1234455555568999
Q ss_pred EEEeCCCccc
Q 040463 86 LAVEDIDCSI 95 (192)
Q Consensus 86 l~lDeid~l~ 95 (192)
+++||...-.
T Consensus 82 lllDEp~~g~ 91 (185)
T smart00534 82 VLLDELGRGT 91 (185)
T ss_pred EEEecCCCCC
Confidence 9999987744
No 393
>PRK14529 adenylate kinase; Provisional
Probab=97.47 E-value=0.00011 Score=58.51 Aligned_cols=29 Identities=17% Similarity=0.378 Sum_probs=25.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCD 61 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~ 61 (192)
.|+|.||||+||||+++.+++.++.+.+.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is 30 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIE 30 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcc
Confidence 38899999999999999999999877653
No 394
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.47 E-value=0.00038 Score=54.77 Aligned_cols=39 Identities=23% Similarity=0.326 Sum_probs=29.7
Q ss_pred cCCCCccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecC
Q 040463 27 GRAWKRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELT 65 (192)
Q Consensus 27 ~~~~~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~ 65 (192)
|++...-++++|+||+|||+++..+|... +.++++++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 45555558899999999999999998765 4566666554
No 395
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.46 E-value=0.00074 Score=52.60 Aligned_cols=20 Identities=15% Similarity=0.268 Sum_probs=18.9
Q ss_pred cEEEEcCCCCcHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMA 52 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia 52 (192)
.++|.||.|+||||+.+.++
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 49999999999999999998
No 396
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.46 E-value=0.00024 Score=56.09 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=19.8
Q ss_pred ccEEEEcCCCCcHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~ 53 (192)
+.++|.||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 4589999999999999999983
No 397
>PRK05973 replicative DNA helicase; Provisional
Probab=97.45 E-value=0.00044 Score=55.54 Aligned_cols=39 Identities=21% Similarity=0.004 Sum_probs=28.4
Q ss_pred cCCCCccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecC
Q 040463 27 GRAWKRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELT 65 (192)
Q Consensus 27 ~~~~~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~ 65 (192)
|+++...+++.|+||+|||+++-.++... |.+++++++.
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 34444458889999999999988877654 6666666544
No 398
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.45 E-value=0.0011 Score=57.64 Aligned_cols=35 Identities=26% Similarity=0.247 Sum_probs=26.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEeecCC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL-----NFDVCDLELTT 66 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~-----~~~~~~i~~~~ 66 (192)
..++|.||+|+||||++..+|..+ +..+..+++..
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 458899999999999888887654 34566666655
No 399
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.45 E-value=0.00085 Score=50.59 Aligned_cols=25 Identities=20% Similarity=0.204 Sum_probs=21.5
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
...+.|.||+|+|||||.+.++...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3348899999999999999999765
No 400
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.44 E-value=0.00018 Score=57.92 Aligned_cols=31 Identities=35% Similarity=0.467 Sum_probs=25.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEeec
Q 040463 34 YLLYSPPRTGKSSLTAAMANYL---NFDVCDLEL 64 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~ 64 (192)
|+|+|+||+||||+++.+++++ +..+..++.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~ 35 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT 35 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc
Confidence 6899999999999999999987 345555543
No 401
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.43 E-value=0.00039 Score=57.64 Aligned_cols=30 Identities=17% Similarity=0.117 Sum_probs=26.0
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANYLNFDV 59 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~~~~~~ 59 (192)
.|-.|++.|++|||||++|..+|..++.+.
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l~~~~ 120 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRLGIRS 120 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 344688899999999999999999998773
No 402
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.43 E-value=0.00052 Score=54.50 Aligned_cols=40 Identities=13% Similarity=0.070 Sum_probs=29.5
Q ss_pred cCCCCccEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEeecCC
Q 040463 27 GRAWKRGYLLYSPPRTGKSSLTAAMANYL---------NFDVCDLELTT 66 (192)
Q Consensus 27 ~~~~~~~ilL~GppGtGKt~l~~~ia~~~---------~~~~~~i~~~~ 66 (192)
|++...-+.|+||||||||+++..++... +..+++++...
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 34555458899999999999999998653 25667776655
No 403
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.42 E-value=0.00026 Score=58.89 Aligned_cols=64 Identities=9% Similarity=0.036 Sum_probs=41.4
Q ss_pred CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEeCCcc
Q 040463 82 NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKTDLTL 161 (192)
Q Consensus 82 ~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t~~l~ 161 (192)
.|-|+++||..+.++ . --...++.+|+..-..+ +..|+|+|..+|
T Consensus 182 ~~~IlLMDEaFSALD--P-----------------------LIR~~mQdeLl~Lq~~l----------~KTIvFitHDLd 226 (386)
T COG4175 182 DPDILLMDEAFSALD--P-----------------------LIRTEMQDELLELQAKL----------KKTIVFITHDLD 226 (386)
T ss_pred CCCEEEecCchhhcC--h-----------------------HHHHHHHHHHHHHHHHh----------CCeEEEEecCHH
Confidence 588999999988764 0 11224445555544444 446999998899
Q ss_pred ccccCCCcc-----eeEEEecCCC
Q 040463 162 NLLLRPGCM-----DMHIHMSYCT 180 (192)
Q Consensus 162 ~~l~~~~rf-----~~~i~~~~p~ 180 (192)
++++-..|+ +..|.++.|.
T Consensus 227 EAlriG~rIaimkdG~ivQ~Gtp~ 250 (386)
T COG4175 227 EALRIGDRIAIMKDGEIVQVGTPE 250 (386)
T ss_pred HHHhccceEEEecCCeEEEeCCHH
Confidence 999865565 3445555543
No 404
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.41 E-value=0.00035 Score=55.90 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=21.1
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
..+-|.|++||||||++++++...
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhccc
Confidence 347799999999999999999865
No 405
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0018 Score=60.59 Aligned_cols=69 Identities=19% Similarity=0.341 Sum_probs=49.9
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEeecCCCCC--------hhHHHHHHHh---cCCCeEE
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYL----------NFDVCDLELTTLRD--------NTKLRNVLIA---TENKSIL 86 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~----------~~~~~~i~~~~~~~--------~~~l~~~~~~---~~~~~Il 86 (192)
...+++-+|+|.||+|||.++..+++.. ...++.++...+.. +..+...... ...+.||
T Consensus 205 Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvIL 284 (898)
T KOG1051|consen 205 RKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVIL 284 (898)
T ss_pred ccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEE
Confidence 3344789999999999999999999976 23455555554432 3345555554 3468999
Q ss_pred EEeCCCcccc
Q 040463 87 AVEDIDCSIN 96 (192)
Q Consensus 87 ~lDeid~l~~ 96 (192)
|+||++.+..
T Consensus 285 figelh~lvg 294 (898)
T KOG1051|consen 285 FLGELHWLVG 294 (898)
T ss_pred Eecceeeeec
Confidence 9999999976
No 406
>PLN02459 probable adenylate kinase
Probab=97.40 E-value=0.00019 Score=58.33 Aligned_cols=30 Identities=13% Similarity=0.321 Sum_probs=26.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
.++|.||||+||+|+++.+|+.++...+..
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~~is~ 60 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVPHIAT 60 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeC
Confidence 388899999999999999999998776653
No 407
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.39 E-value=0.0002 Score=54.57 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=22.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
.-|+|.|++|+||||+++.+++.+.
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4588899999999999999999885
No 408
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.38 E-value=0.00071 Score=53.93 Aligned_cols=40 Identities=20% Similarity=0.144 Sum_probs=31.0
Q ss_pred cCCCCccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCC
Q 040463 27 GRAWKRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTT 66 (192)
Q Consensus 27 ~~~~~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~ 66 (192)
|++.+..++++|+||+|||+++..++... +..+++++...
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 45666668899999999999999997643 66777777643
No 409
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.38 E-value=0.00021 Score=54.78 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=25.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~~~~~~i~ 63 (192)
|.|+|++|+||||+++.+++ +|.+++..+
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D 30 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDAD 30 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEecC
Confidence 67999999999999999999 787776544
No 410
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.38 E-value=0.00019 Score=64.44 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=22.2
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
+...+++.||+|||||++.|++|..-
T Consensus 418 ~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 418 PGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34459999999999999999999854
No 411
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.38 E-value=0.00016 Score=55.04 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=22.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNF 57 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~ 57 (192)
-+++.||+|+||||++++++..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4789999999999999999998753
No 412
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.37 E-value=0.00029 Score=57.31 Aligned_cols=39 Identities=18% Similarity=0.019 Sum_probs=29.4
Q ss_pred cCCCCccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecC
Q 040463 27 GRAWKRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELT 65 (192)
Q Consensus 27 ~~~~~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~ 65 (192)
|++....++++||||||||+++-.++... +.++++++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 34555558899999999999998887643 5677777765
No 413
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.36 E-value=0.00024 Score=55.49 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=24.2
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDV 59 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~ 59 (192)
.-+++.|+||+||||+++.++..++..+
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 3578899999999999999999987644
No 414
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.35 E-value=0.0016 Score=51.40 Aligned_cols=37 Identities=24% Similarity=0.236 Sum_probs=27.3
Q ss_pred hHHHHHHhcC--CCCccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 19 RKEFYRNVGR--AWKRGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 19 ~~~~~~~~~~--~~~~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
+.++=+.+|. |.+.=+++.|+.|||||.+.+.++.-+
T Consensus 14 ndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~ 52 (235)
T COG2874 14 NDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGF 52 (235)
T ss_pred cHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHH
Confidence 4566666664 443337788999999999999998754
No 415
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.00042 Score=62.93 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=21.7
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
...+-|+||+|+||||++..+-+..
T Consensus 494 Ge~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 494 GEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3458899999999999999998876
No 416
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.34 E-value=0.0014 Score=52.65 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=22.6
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 29 AWKRGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 29 ~~~~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
.+...-.++||.|+|||||.+.++.+.
T Consensus 55 ~~ge~W~I~G~NGsGKTTLL~ll~~~~ 81 (257)
T COG1119 55 NPGEHWAIVGPNGAGKTTLLSLLTGEH 81 (257)
T ss_pred cCCCcEEEECCCCCCHHHHHHHHhccc
Confidence 334458899999999999999998865
No 417
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.34 E-value=0.00022 Score=54.38 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 040463 34 YLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~ 55 (192)
|+|.|+||+||||+++.+.+.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999999987
No 418
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.32 E-value=0.00035 Score=63.71 Aligned_cols=63 Identities=17% Similarity=0.175 Sum_probs=41.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEE-eecCCCCCh--hHHH-----HHHHhc-----CCCeEEEEeCCCccc
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCD-LELTTLRDN--TKLR-----NVLIAT-----ENKSILAVEDIDCSI 95 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~-i~~~~~~~~--~~l~-----~~~~~~-----~~~~Il~lDeid~l~ 95 (192)
+|||.|-||+|||.|.+.+++.+...++. -..++-.+- +-.+ ++...+ +.++|.+|||+|..-
T Consensus 321 nILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~ 396 (682)
T COG1241 321 HILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMN 396 (682)
T ss_pred eEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCC
Confidence 49999999999999999999988766553 233332210 0011 111122 258999999999864
No 419
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.32 E-value=0.001 Score=53.94 Aligned_cols=22 Identities=32% Similarity=0.455 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 040463 34 YLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~ 55 (192)
+.|.||.|||||||.++++..+
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred EEEECCCCCCHHHHHHHHhccC
Confidence 7789999999999999999976
No 420
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.32 E-value=0.0002 Score=51.81 Aligned_cols=27 Identities=26% Similarity=0.333 Sum_probs=23.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFD 58 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~ 58 (192)
.-|+|+|+=|+|||+++|++++.+|..
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 458899999999999999999999875
No 421
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.32 E-value=0.00047 Score=56.09 Aligned_cols=64 Identities=19% Similarity=0.393 Sum_probs=38.7
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCc---EEEeec-CCC-------------CChhHHHHHHHhc--CCCeEEEEeCC
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFD---VCDLEL-TTL-------------RDNTKLRNVLIAT--ENKSILAVEDI 91 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~---~~~i~~-~~~-------------~~~~~l~~~~~~~--~~~~Il~lDei 91 (192)
+.++++.||+|+||||+.+++....... ++.+.. ..+ .....+.+.+..+ ..|.++++.|+
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEi 206 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEI 206 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE
T ss_pred ceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHHhcCCCCccccccc
Confidence 4579999999999999999999987333 333321 011 0112333444433 36999999998
Q ss_pred Ccc
Q 040463 92 DCS 94 (192)
Q Consensus 92 d~l 94 (192)
...
T Consensus 207 R~~ 209 (270)
T PF00437_consen 207 RDP 209 (270)
T ss_dssp -SC
T ss_pred CCH
Confidence 763
No 422
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.31 E-value=0.00033 Score=54.71 Aligned_cols=36 Identities=25% Similarity=0.273 Sum_probs=25.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTL 67 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~ 67 (192)
+-++|+||+|+||||.+-.+|.++ +..+.-+++...
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~ 40 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTY 40 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTS
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCC
Confidence 468899999999999888888766 444554554444
No 423
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.31 E-value=0.004 Score=51.95 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=19.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~ 53 (192)
..|++.|.+|+|||++++.+..
T Consensus 39 ~rIllvGktGVGKSSliNsIlG 60 (313)
T TIGR00991 39 LTILVMGKGGVGKSSTVNSIIG 60 (313)
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 3699999999999999999765
No 424
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.31 E-value=0.0017 Score=53.02 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=20.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
.+++.||+|+||||+++++...+.
T Consensus 82 lilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhC
Confidence 488899999999999999877763
No 425
>PRK13808 adenylate kinase; Provisional
Probab=97.31 E-value=0.00025 Score=59.63 Aligned_cols=29 Identities=17% Similarity=0.329 Sum_probs=26.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
|+|+||||+|||++++.|+..++...+++
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 88999999999999999999998877664
No 426
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.31 E-value=0.00041 Score=54.32 Aligned_cols=25 Identities=12% Similarity=0.110 Sum_probs=22.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
.-|.|.|++||||||+++.++..++
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3577899999999999999999883
No 427
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=97.31 E-value=0.00028 Score=54.98 Aligned_cols=30 Identities=20% Similarity=0.143 Sum_probs=26.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
-|.++|++|+|||++++.+++.+|.++++.
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~~ 32 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILDA 32 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEeeC
Confidence 478999999999999999999888888753
No 428
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.30 E-value=0.0014 Score=51.50 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~ 53 (192)
.-++|.||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3488999999999999999874
No 429
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.30 E-value=0.00022 Score=55.30 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
|.+.||+|+||||+|+.++..++
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999996
No 430
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.30 E-value=0.00086 Score=55.81 Aligned_cols=39 Identities=8% Similarity=0.029 Sum_probs=28.8
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEeecCC
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYL---------NFDVCDLELTT 66 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~---------~~~~~~i~~~~ 66 (192)
++...-++++||||+|||+++-.+|... +-.+++++...
T Consensus 92 i~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 92 IETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 3444347799999999999999888763 23677777665
No 431
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.29 E-value=0.00056 Score=56.05 Aligned_cols=25 Identities=36% Similarity=0.602 Sum_probs=22.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
.+++++||+|+||||+.+.++..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 4799999999999999999999874
No 432
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.29 E-value=0.00037 Score=53.53 Aligned_cols=33 Identities=18% Similarity=0.328 Sum_probs=25.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC---CcEEEeecCC
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLN---FDVCDLELTT 66 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~---~~~~~i~~~~ 66 (192)
|.+.|+|||||||+++.++..++ ..+..++..+
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Dd 37 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDD 37 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhh
Confidence 67899999999999999999874 3444444433
No 433
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.29 E-value=0.00068 Score=51.01 Aligned_cols=35 Identities=26% Similarity=0.273 Sum_probs=28.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTL 67 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~ 67 (192)
.|.|.|.||+||||+|+++.+.+ +.+++.++...+
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~l 41 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNL 41 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcch
Confidence 47788999999999999999987 677777766554
No 434
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.28 E-value=0.0012 Score=55.93 Aligned_cols=26 Identities=35% Similarity=0.560 Sum_probs=22.1
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
...+++.||+|+||||+.+++..++.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 34588999999999999999988764
No 435
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.28 E-value=0.00036 Score=58.50 Aligned_cols=34 Identities=15% Similarity=-0.003 Sum_probs=25.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELT 65 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~ 65 (192)
.-+.|.||+|+||||++..+|..+ +..+.-+++.
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 347889999999999999999877 3445544443
No 436
>PF13479 AAA_24: AAA domain
Probab=97.27 E-value=0.00015 Score=57.15 Aligned_cols=60 Identities=22% Similarity=0.367 Sum_probs=37.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCC-------------CCChhHHHHHHHhc----CCCeEEEEeCCCcc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTT-------------LRDNTKLRNVLIAT----ENKSILAVEDIDCS 94 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~-------------~~~~~~l~~~~~~~----~~~~Il~lDeid~l 94 (192)
-.++|||+||+|||+++..+-+.+ ++...... +.+-..+.+.+... ..--.|+||.++.+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~~k~l---~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~~ 80 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASLPKPL---FIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISWL 80 (213)
T ss_pred eEEEEECCCCCCHHHHHHhCCCeE---EEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHHH
Confidence 359999999999999998882211 22222221 11234455554332 34578999988887
No 437
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.27 E-value=0.00035 Score=62.61 Aligned_cols=33 Identities=12% Similarity=0.243 Sum_probs=30.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeec
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLEL 64 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~ 64 (192)
..|+|.|.+||||||+.+.+|+.++.++++.+.
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~ 39 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQMMRLPFADADV 39 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 359999999999999999999999999998764
No 438
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.26 E-value=0.0012 Score=59.99 Aligned_cols=27 Identities=44% Similarity=0.543 Sum_probs=24.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFD 58 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~ 58 (192)
.+++|+||||||||++++++++.++.+
T Consensus 38 ~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 38 RNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 489999999999999999999999654
No 439
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.26 E-value=0.00091 Score=55.92 Aligned_cols=39 Identities=10% Similarity=0.048 Sum_probs=29.1
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEeecCC
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYL---------NFDVCDLELTT 66 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~---------~~~~~~i~~~~ 66 (192)
++...-++++||||||||+++-.+|... +..++++++..
T Consensus 99 i~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 99 IETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred ccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 4444447799999999999999888653 23677777655
No 440
>PRK10867 signal recognition particle protein; Provisional
Probab=97.26 E-value=0.0013 Score=57.30 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=28.7
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh----CCcEEEeecCCCC
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL----NFDVCDLELTTLR 68 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~----~~~~~~i~~~~~~ 68 (192)
+.-++++|++|+||||++..+|.++ +..+.-+++..+.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R 141 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR 141 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc
Confidence 4458899999999999888888765 5566667666544
No 441
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.26 E-value=0.0016 Score=56.11 Aligned_cols=35 Identities=23% Similarity=0.192 Sum_probs=26.8
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTT 66 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~ 66 (192)
..|+|.||+|+||||++..+|..+ +..+..+++..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt 279 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDH 279 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCC
Confidence 468899999999999999999876 34455555543
No 442
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.26 E-value=0.0011 Score=55.45 Aligned_cols=53 Identities=13% Similarity=0.061 Sum_probs=37.6
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEeecCCCCChhHHHHHHHhc
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYL---------NFDVCDLELTTLRDNTKLRNVLIAT 80 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~---------~~~~~~i~~~~~~~~~~l~~~~~~~ 80 (192)
++...-+.++||||+|||+++..+|-.. +..+++++...-.+.+++.++....
T Consensus 93 i~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~ 154 (313)
T TIGR02238 93 IESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERF 154 (313)
T ss_pred CcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHc
Confidence 4444347799999999999998877432 3567788877655567777776554
No 443
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.25 E-value=0.0016 Score=58.64 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=21.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.+.||+|+|||||++.++...
T Consensus 371 ~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 371 TVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 38899999999999999999876
No 444
>PRK08356 hypothetical protein; Provisional
Probab=97.25 E-value=0.00036 Score=54.19 Aligned_cols=28 Identities=11% Similarity=0.044 Sum_probs=22.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCD 61 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~ 61 (192)
-|+|+||||+||||+++.++. .+.+.+.
T Consensus 7 ~i~~~G~~gsGK~t~a~~l~~-~g~~~is 34 (195)
T PRK08356 7 IVGVVGKIAAGKTTVAKFFEE-KGFCRVS 34 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEe
Confidence 478899999999999999964 6766443
No 445
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.25 E-value=0.0015 Score=54.92 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=22.8
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
+.++++.|++|+||||+++++....
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999875
No 446
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.25 E-value=0.00076 Score=54.80 Aligned_cols=61 Identities=11% Similarity=0.185 Sum_probs=42.3
Q ss_pred EEcCCCCcHHHHHHHHHHHh---------CCcEEEeecCCCCChhHHHHHHHhc--------------------------
Q 040463 36 LYSPPRTGKSSLTAAMANYL---------NFDVCDLELTTLRDNTKLRNVLIAT-------------------------- 80 (192)
Q Consensus 36 L~GppGtGKt~l~~~ia~~~---------~~~~~~i~~~~~~~~~~l~~~~~~~-------------------------- 80 (192)
|+||||+|||.++-.+|-.. +..+++++...-.....+.++..+.
T Consensus 43 i~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~~~l~~~L 122 (256)
T PF08423_consen 43 IVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFDLEELLELL 122 (256)
T ss_dssp EEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSHHHHHHHH
T ss_pred EEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCCHHHHHHHH
Confidence 89999999999998887654 3458888877754443333333221
Q ss_pred ---------CCCeEEEEeCCCcccc
Q 040463 81 ---------ENKSILAVEDIDCSIN 96 (192)
Q Consensus 81 ---------~~~~Il~lDeid~l~~ 96 (192)
.+-.+|+||.+-.+..
T Consensus 123 ~~l~~~l~~~~ikLIVIDSIaalfr 147 (256)
T PF08423_consen 123 EQLPKLLSESKIKLIVIDSIAALFR 147 (256)
T ss_dssp HHHHHHHHHSCEEEEEEETSSHHHH
T ss_pred HHHHhhccccceEEEEecchHHHHH
Confidence 1457999999999875
No 447
>PRK12338 hypothetical protein; Provisional
Probab=97.25 E-value=0.00037 Score=58.23 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=25.1
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFDV 59 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~~ 59 (192)
+.-|++.|+||+||||+++++|..++...
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~ 32 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKH 32 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeE
Confidence 34688899999999999999999998654
No 448
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.24 E-value=0.00039 Score=54.09 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=22.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
.-++|.||+|+|||++++.++..+.
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4588999999999999999999875
No 449
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.24 E-value=0.00023 Score=54.17 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=21.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNF 57 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~ 57 (192)
-++|.||+|+||||+++.+++....
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCcc
Confidence 4789999999999999999997643
No 450
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.23 E-value=0.0021 Score=57.96 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
.-+.+.||+|+||||+++.++...
T Consensus 377 ~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 377 QRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 348899999999999999998865
No 451
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.23 E-value=0.0011 Score=52.56 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=18.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~ 53 (192)
-++|.||.|+|||++.+.++.
T Consensus 32 ~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 32 ILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 478999999999999999974
No 452
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.22 E-value=0.001 Score=55.03 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 040463 34 YLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~ 55 (192)
+-|.||+|+||||+.|.||...
T Consensus 31 vaLlGpSGaGKsTlLRiIAGLe 52 (345)
T COG1118 31 VALLGPSGAGKSTLLRIIAGLE 52 (345)
T ss_pred EEEECCCCCcHHHHHHHHhCcC
Confidence 7799999999999999999865
No 453
>PRK14974 cell division protein FtsY; Provisional
Probab=97.22 E-value=0.0022 Score=54.16 Aligned_cols=35 Identities=29% Similarity=0.276 Sum_probs=26.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTT 66 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~ 66 (192)
.-++|.||+|+||||++..+|..+ +..+..+.+..
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt 178 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDT 178 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 458899999999999999998876 44555555443
No 454
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.22 E-value=0.00034 Score=54.77 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
+.+.||+|+||||++++++..++
T Consensus 9 i~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 9 IGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 66889999999999999999876
No 455
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.21 E-value=0.00037 Score=51.19 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=21.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCc
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLNFD 58 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~~~ 58 (192)
++|.||+|+|||++++.+++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 5789999999999999999986543
No 456
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.21 E-value=0.00033 Score=60.68 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=23.8
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNF 57 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~ 57 (192)
.|||+.||||.||||+|+++|..+..
T Consensus 264 eGILIAG~PGaGKsTFaqAlAefy~~ 289 (604)
T COG1855 264 EGILIAGAPGAGKSTFAQALAEFYAS 289 (604)
T ss_pred cceEEecCCCCChhHHHHHHHHHHHh
Confidence 59999999999999999999998743
No 457
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.21 E-value=0.00057 Score=52.98 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 040463 34 YLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~ 55 (192)
|.|.||+||||||+++.++..+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999987
No 458
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.21 E-value=0.0017 Score=56.39 Aligned_cols=37 Identities=22% Similarity=0.376 Sum_probs=29.2
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLR 68 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~ 68 (192)
.-|+|+|++|+||||++..+|.++ |..+.-+++..+.
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 458899999999999999999877 5666666665543
No 459
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.21 E-value=0.0011 Score=59.42 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=42.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCC-CCC-------hhHHHHHHHhc-----CCCeEEEEeCCCccc
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTT-LRD-------NTKLRNVLIAT-----ENKSILAVEDIDCSI 95 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~-~~~-------~~~l~~~~~~~-----~~~~Il~lDeid~l~ 95 (192)
+|+++|.||+|||-+.++.+..+.+.++...-++ -.+ .+.--++...+ +..+|-.|||+|+..
T Consensus 380 nv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd 455 (764)
T KOG0480|consen 380 NVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMD 455 (764)
T ss_pred eEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEEEecCCCCceeeecCcEEEccCceEEechhcccC
Confidence 4999999999999999999998877765432222 110 01111222222 257899999999974
No 460
>PRK13975 thymidylate kinase; Provisional
Probab=97.21 E-value=0.00049 Score=53.10 Aligned_cols=28 Identities=18% Similarity=0.061 Sum_probs=24.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVC 60 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~ 60 (192)
-|.+.|++|+||||+++.+++.++..+.
T Consensus 4 ~I~ieG~~GsGKtT~~~~L~~~l~~~~~ 31 (196)
T PRK13975 4 FIVFEGIDGSGKTTQAKLLAEKLNAFWT 31 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 4788999999999999999999986443
No 461
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.21 E-value=0.00081 Score=57.02 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=20.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+++.|.||||||.++-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47788999999999999999987
No 462
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.20 E-value=0.0004 Score=53.87 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=24.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh-CCcEEEee
Q 040463 34 YLLYSPPRTGKSSLTAAMANYL-NFDVCDLE 63 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~-~~~~~~i~ 63 (192)
|.+.|+|||||||+++.++..+ +..++.++
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~D 32 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQD 32 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEccc
Confidence 5688999999999999999997 44444433
No 463
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.19 E-value=0.002 Score=53.99 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=22.5
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
+.++++.|++|+||||++++++...
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999999863
No 464
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.19 E-value=0.0005 Score=54.20 Aligned_cols=34 Identities=32% Similarity=0.460 Sum_probs=26.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCC
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTL 67 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~ 67 (192)
++++||+|||||.++=++|+.+|.+++..+.-..
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~ 37 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISLDRIQC 37 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEecceec
Confidence 6789999999999999999999999998765444
No 465
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.19 E-value=0.00066 Score=51.59 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=25.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeec
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLEL 64 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~ 64 (192)
..+.+.|+||+||||+++.++..+ +..+..++.
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~ 40 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDG 40 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcC
Confidence 357889999999999999999987 334444443
No 466
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=97.19 E-value=0.00047 Score=54.70 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=26.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCD 61 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~ 61 (192)
.|.+.||+||||||+++.+|..++.+++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~~~~~ 32 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLD 32 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 47789999999999999999999987764
No 467
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.18 E-value=0.00068 Score=60.35 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.+.||+|+||||+++.++...
T Consensus 363 ~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 363 RVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38899999999999999998765
No 468
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=97.17 E-value=0.00061 Score=52.19 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=24.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEe
Q 040463 34 YLLYSPPRTGKSSLTAAMANYL---NFDVCDL 62 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~---~~~~~~i 62 (192)
|.|.|++|+||||+++.+++++ |..+..+
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~ 34 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEARGYEVVLT 34 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 6788999999999999999998 5555544
No 469
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.17 E-value=0.00048 Score=52.81 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=23.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCc
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFD 58 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~ 58 (192)
-+.+.||+|+||||+++.++..++..
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~~ 30 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSAK 30 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 47889999999999999999988764
No 470
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=97.17 E-value=0.00039 Score=54.91 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 040463 34 YLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~ 55 (192)
+++.|+||+|||++++.+....
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999884
No 471
>PLN02165 adenylate isopentenyltransferase
Probab=97.17 E-value=0.00046 Score=57.99 Aligned_cols=31 Identities=16% Similarity=0.304 Sum_probs=26.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~ 63 (192)
.++|.||+|+|||+++..+|..++..++..+
T Consensus 45 iivIiGPTGSGKStLA~~LA~~l~~eIIsaD 75 (334)
T PLN02165 45 VVVIMGATGSGKSRLSVDLATRFPSEIINSD 75 (334)
T ss_pred EEEEECCCCCcHHHHHHHHHHHcCCceecCC
Confidence 4889999999999999999999987666544
No 472
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.17 E-value=0.00071 Score=51.26 Aligned_cols=34 Identities=29% Similarity=0.294 Sum_probs=27.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCC
Q 040463 34 YLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTL 67 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~ 67 (192)
+++.||||+|||+++..++..+ +..+..+++...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 6789999999999999998876 566777776554
No 473
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.17 E-value=0.0035 Score=49.92 Aligned_cols=62 Identities=15% Similarity=0.202 Sum_probs=40.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh-----CCcEEE--------------eecC-CCCC--------hhHHHHHHHhcCCC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL-----NFDVCD--------------LELT-TLRD--------NTKLRNVLIATENK 83 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~-----~~~~~~--------------i~~~-~~~~--------~~~l~~~~~~~~~~ 83 (192)
.-++|.||.|+|||++.+.++... |..++. +... ++.. -.++..++..+..+
T Consensus 32 ~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~~ 111 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCTSR 111 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCCCC
Confidence 347899999999999999998722 322211 1111 1000 13456667777789
Q ss_pred eEEEEeCCCc
Q 040463 84 SILAVEDIDC 93 (192)
Q Consensus 84 ~Il~lDeid~ 93 (192)
.++++||+..
T Consensus 112 sLvllDE~~~ 121 (222)
T cd03287 112 SLVILDELGR 121 (222)
T ss_pred eEEEEccCCC
Confidence 9999999765
No 474
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.17 E-value=0.0014 Score=60.36 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=23.8
Q ss_pred cCCCCcc--EEEEcCCCCcHHHHHHHHHHHh
Q 040463 27 GRAWKRG--YLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 27 ~~~~~~~--ilL~GppGtGKt~l~~~ia~~~ 55 (192)
.+..+.| +-+.|++|||||||+|.+....
T Consensus 493 sL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 493 SLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred eEEeCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3333445 9999999999999999999866
No 475
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.17 E-value=0.0016 Score=51.45 Aligned_cols=40 Identities=13% Similarity=0.037 Sum_probs=29.7
Q ss_pred cCCCCccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCC
Q 040463 27 GRAWKRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTT 66 (192)
Q Consensus 27 ~~~~~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~ 66 (192)
|++....+++.|+||+|||+++..++... +..+++++...
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 45555568899999999999988887643 56676666644
No 476
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=97.16 E-value=0.00053 Score=53.31 Aligned_cols=30 Identities=27% Similarity=0.206 Sum_probs=25.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~ 63 (192)
-|.|+|++||||||+++.+++ +|.++++.+
T Consensus 4 ~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D 33 (194)
T PRK00081 4 IIGLTGGIGSGKSTVANLFAE-LGAPVIDAD 33 (194)
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEEEec
Confidence 488999999999999999998 887776554
No 477
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=97.16 E-value=0.0016 Score=48.38 Aligned_cols=22 Identities=14% Similarity=0.314 Sum_probs=19.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~ 54 (192)
+|++.|++|+|||+|++.+...
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~ 22 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTL 22 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhh
Confidence 4789999999999999998764
No 478
>PRK06761 hypothetical protein; Provisional
Probab=97.16 E-value=0.00051 Score=56.56 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=24.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCD 61 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~ 61 (192)
-|++.||||+||||+++.+++.+....+.
T Consensus 5 lIvI~G~~GsGKTTla~~L~~~L~~~g~~ 33 (282)
T PRK06761 5 LIIIEGLPGFGKSTTAKMLNDILSQNGIE 33 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCcCceE
Confidence 47889999999999999999998754433
No 479
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.16 E-value=0.00057 Score=57.00 Aligned_cols=33 Identities=21% Similarity=0.393 Sum_probs=27.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeec
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLEL 64 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~ 64 (192)
.-|++.||+|+|||+++..+|+.++..++..+.
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds 37 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISADS 37 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEeccc
Confidence 458889999999999999999999877665544
No 480
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.15 E-value=0.00055 Score=43.38 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
..+|+||.|+||||+..|+...+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998765
No 481
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.15 E-value=0.00043 Score=53.55 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=21.8
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
.-++|.||+|+|||++++.+.+...
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~~ 29 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEHP 29 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4588999999999999999988763
No 482
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.15 E-value=0.00044 Score=55.60 Aligned_cols=29 Identities=24% Similarity=0.523 Sum_probs=21.4
Q ss_pred EEcCCCCcHHHHHHHHHHHhC---CcEEEeec
Q 040463 36 LYSPPRTGKSSLTAAMANYLN---FDVCDLEL 64 (192)
Q Consensus 36 L~GppGtGKt~l~~~ia~~~~---~~~~~i~~ 64 (192)
+.||+|+||||+++++.+++. +++..+|.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNL 32 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNL 32 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEc
Confidence 479999999999999999883 44444443
No 483
>PTZ00202 tuzin; Provisional
Probab=97.14 E-value=0.0033 Score=54.93 Aligned_cols=39 Identities=18% Similarity=0.095 Sum_probs=30.9
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCC
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTT 66 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~ 66 (192)
...+.-+.|.||+|||||++++.+...++...+.++...
T Consensus 283 ~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg 321 (550)
T PTZ00202 283 TAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRG 321 (550)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCC
Confidence 334445778999999999999999999887766666663
No 484
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.13 E-value=0.0022 Score=61.51 Aligned_cols=65 Identities=14% Similarity=0.189 Sum_probs=40.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCC----------ChhHHHHHHHhc-------CCCeEEEEeCC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLR----------DNTKLRNVLIAT-------ENKSILAVEDI 91 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~----------~~~~l~~~~~~~-------~~~~Il~lDei 91 (192)
+-.++.|++||||||+.+++...+ |..++-+-.+.-. ...-+...+... ..+.||+|||+
T Consensus 398 r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~e~~Gi~a~TIas~ll~~~~~~~~l~~~~vlVIDEA 477 (1102)
T PRK13826 398 RIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKEAGIQSRTLSSWELRWNQGRDQLDNKTVFVLDEA 477 (1102)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHHHhhCCCeeeHHHHHhhhccCccCCCCCcEEEEECc
Confidence 357889999999999999987754 5556544332211 011233332221 13579999998
Q ss_pred Ccccc
Q 040463 92 DCSIN 96 (192)
Q Consensus 92 d~l~~ 96 (192)
..+..
T Consensus 478 sMv~~ 482 (1102)
T PRK13826 478 GMVAS 482 (1102)
T ss_pred ccCCH
Confidence 87743
No 485
>PF06431 Polyoma_lg_T_C: Polyomavirus large T antigen C-terminus; InterPro: IPR010932 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []. Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the helicase domain of LTag, which assembles into a hexameric structure containing a positively charged central channel that can bind both single- and double-stranded DNA []. ATP binding and hydrolysis trigger large conformational changes which are thought to be coupled to the melting of origin DNA and the unwinding of duplex DNA []. These conformational changes cause the angles and orientations between regions of a monomer to alter, creating what was described as an "iris"-like motion in the hexamer. In addition to this, six beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 2H1L_H 1SVO_A 1SVM_E 1SVL_B 1N25_A 4E2I_K.
Probab=97.13 E-value=0.0017 Score=54.93 Aligned_cols=61 Identities=23% Similarity=0.292 Sum_probs=39.9
Q ss_pred cCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHHHHHHhcCCCeEEEEeCC
Q 040463 27 GRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRNVLIATENKSILAVEDI 91 (192)
Q Consensus 27 ~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~Il~lDei 91 (192)
+.|+++++++-||-.|||||+|.|+-..+|-..+.+++.. +.+.=-+--+-..-.++++|+
T Consensus 151 N~PKkRy~lFkGPvNsGKTTlAAAlLdL~gG~~LNvN~p~----dkl~FELG~AiDQfmVvFEDV 211 (417)
T PF06431_consen 151 NIPKKRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP----DKLNFELGCAIDQFMVVFEDV 211 (417)
T ss_dssp TBTTB-EEEEE-STTSSHHHHHHHHHHHH-EEEE-TSS-T----TTHHHHHCCCTT-SEEEEEEE
T ss_pred CCCcceeEEEecCcCCchHHHHHHHHHhcCCceeecCCCh----hhcchhhheeeceEEEEEEec
Confidence 4678889999999999999999999999998888888766 333322322223445555554
No 486
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.13 E-value=0.0013 Score=47.83 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 040463 34 YLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~ 54 (192)
+.|.|++|+|||++.+++...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 679999999999999999875
No 487
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.12 E-value=0.00043 Score=52.34 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=22.2
Q ss_pred EcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 37 YSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 37 ~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
.|++||||||++++++..++..++.-
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~ 26 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDG 26 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeC
Confidence 49999999999999999998665544
No 488
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.11 E-value=0.00056 Score=53.25 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=29.1
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHh-CCcEEEeecCCCC
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANYL-NFDVCDLELTTLR 68 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~~-~~~~~~i~~~~~~ 68 (192)
.|.-+++.|+||+|||++++.+...+ +-.++.++...+.
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r 53 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFR 53 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGG
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHH
Confidence 34568888999999999999999988 6777778776654
No 489
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=97.10 E-value=0.0018 Score=53.80 Aligned_cols=61 Identities=16% Similarity=0.220 Sum_probs=38.2
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecC----CCCChhHHHHHHHhcCCCeEEEEeCCCc
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELT----TLRDNTKLRNVLIATENKSILAVEDIDC 93 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~----~~~~~~~l~~~~~~~~~~~Il~lDeid~ 93 (192)
...-++|+|+.|+|||++.+.+.+.+|-.......+ .+.+.. -.+......-++++||++.
T Consensus 75 ~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~~~~~---f~~a~l~gk~l~~~~E~~~ 139 (304)
T TIGR01613 75 EQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEFQEHR---FGLARLEGKRAVIGDEVQK 139 (304)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhccCCC---chhhhhcCCEEEEecCCCC
Confidence 344588999999999999999999888665332221 111101 0111223456788899865
No 490
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=97.09 E-value=0.002 Score=56.41 Aligned_cols=28 Identities=29% Similarity=0.264 Sum_probs=25.1
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCc
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFD 58 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~ 58 (192)
+.-++++|+||+||||++..+|..++..
T Consensus 255 p~vil~~G~~G~GKSt~a~~LA~~lg~~ 282 (475)
T PRK12337 255 PLHVLIGGVSGVGKSVLASALAYRLGIT 282 (475)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 4568889999999999999999999875
No 491
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.09 E-value=0.0014 Score=55.27 Aligned_cols=47 Identities=30% Similarity=0.298 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhHHHHHHhcCCC-CccEEEEcCCCCcHHHHHHHHHHHhCCc
Q 040463 8 MKMDDLERFVKRKEFYRNVGRAW-KRGYLLYSPPRTGKSSLTAAMANYLNFD 58 (192)
Q Consensus 8 ~l~~~~~~~l~~~~~~~~~~~~~-~~~ilL~GppGtGKt~l~~~ia~~~~~~ 58 (192)
+.++.+..++++.. .|... ++-++|.||+|+|||++++.+.+.+...
T Consensus 68 ~~i~~lV~~fk~AA----~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 68 ETIERLVNYFKSAA----QGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred HHHHHHHHHHHHHH----hccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 44555666776543 23333 3457789999999999999999988644
No 492
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.09 E-value=0.0024 Score=53.22 Aligned_cols=28 Identities=11% Similarity=0.291 Sum_probs=24.1
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
...+.++++.||+|+||||++++++..+
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 3345689999999999999999999876
No 493
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.08 E-value=0.0031 Score=47.43 Aligned_cols=65 Identities=18% Similarity=0.304 Sum_probs=39.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCc---------------EEEee----c--CCCCC-hh---HHHHHHHhcC--CCe
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFD---------------VCDLE----L--TTLRD-NT---KLRNVLIATE--NKS 84 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~---------------~~~i~----~--~~~~~-~~---~l~~~~~~~~--~~~ 84 (192)
.-.++.||.|+|||++.++++-.+... +.... . ..+.. .. .+...+.... +|.
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L~~~~~~~~~ 101 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALASLKPRP 101 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeeccccHHHHHHHHHHHHhcCCCCCC
Confidence 357889999999999999986644221 22222 1 11111 11 3334444433 789
Q ss_pred EEEEeCCCcccc
Q 040463 85 ILAVEDIDCSIN 96 (192)
Q Consensus 85 Il~lDeid~l~~ 96 (192)
++++||...-.+
T Consensus 102 llllDEp~~gld 113 (162)
T cd03227 102 LYILDEIDRGLD 113 (162)
T ss_pred EEEEeCCCCCCC
Confidence 999999888544
No 494
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=97.07 E-value=0.00074 Score=53.06 Aligned_cols=31 Identities=23% Similarity=0.213 Sum_probs=27.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~ 63 (192)
.|.|+|++||||||+++.++..+|.+++..+
T Consensus 8 ~IglTG~iGsGKStv~~~l~~~lg~~vidaD 38 (204)
T PRK14733 8 PIGITGGIASGKSTATRILKEKLNLNVVCAD 38 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEecc
Confidence 4889999999999999999998998876544
No 495
>PRK07667 uridine kinase; Provisional
Probab=97.07 E-value=0.001 Score=51.58 Aligned_cols=35 Identities=11% Similarity=0.180 Sum_probs=26.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC---CcEEEeecCCC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLN---FDVCDLELTTL 67 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~---~~~~~i~~~~~ 67 (192)
-|.+.|++|+||||+++.++..++ .++..++...+
T Consensus 19 iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 19 ILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 477899999999999999999874 45555555443
No 496
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.06 E-value=0.0011 Score=52.81 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=30.0
Q ss_pred cCCCCccEEEEcCCCCcHHHHHHHHHHHh----CCcEEEeecCC
Q 040463 27 GRAWKRGYLLYSPPRTGKSSLTAAMANYL----NFDVCDLELTT 66 (192)
Q Consensus 27 ~~~~~~~ilL~GppGtGKt~l~~~ia~~~----~~~~~~i~~~~ 66 (192)
|+.+..-++|.|+||+|||+++..++... +.+++.+++..
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 55555558889999999999988887654 67777766433
No 497
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.06 E-value=0.00054 Score=53.41 Aligned_cols=24 Identities=42% Similarity=0.595 Sum_probs=21.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
-+++.||+|+||||++++++..+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 377889999999999999888774
No 498
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.06 E-value=0.0031 Score=58.09 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=21.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
..+.+.||+|+||||+++.++...
T Consensus 492 ~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 492 EKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 348899999999999999999865
No 499
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=97.05 E-value=0.0017 Score=55.52 Aligned_cols=35 Identities=31% Similarity=0.534 Sum_probs=30.5
Q ss_pred cCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 040463 27 GRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCD 61 (192)
Q Consensus 27 ~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~ 61 (192)
|.++++.++|||||+||||+++-.+.+.++=.++.
T Consensus 258 g~PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkViS 292 (432)
T PF00519_consen 258 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVIS 292 (432)
T ss_dssp TBTTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE-
T ss_pred CCCcccEEEEECCCCCchhHHHHHHHHHhCCEEEE
Confidence 67888889999999999999999999998777765
No 500
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.05 E-value=0.00071 Score=52.14 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=25.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
|.++|.+||||||+++.+++..+.+++..
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i~~ 30 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVIDA 30 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEEeC
Confidence 67999999999999999999876777654
Done!