Query 040463
Match_columns 192
No_of_seqs 114 out of 1680
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 13:53:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040463.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040463hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 1.9E-34 6.4E-39 244.6 16.6 166 3-191 154-331 (405)
2 4b4t_L 26S protease subunit RP 100.0 1.3E-33 4.6E-38 242.1 18.5 167 3-192 187-365 (437)
3 4b4t_I 26S protease regulatory 100.0 1.3E-33 4.5E-38 240.4 15.9 167 3-192 188-366 (437)
4 4b4t_M 26S protease regulatory 100.0 1.3E-33 4.4E-38 242.1 14.9 166 3-191 187-364 (434)
5 4b4t_K 26S protease regulatory 100.0 5.5E-33 1.9E-37 237.9 16.0 166 3-191 178-356 (428)
6 4b4t_H 26S protease regulatory 100.0 7.1E-33 2.4E-37 237.8 16.0 166 3-191 215-392 (467)
7 3cf2_A TER ATPase, transitiona 100.0 2.2E-29 7.6E-34 229.2 12.0 163 3-192 210-385 (806)
8 3cf2_A TER ATPase, transitiona 100.0 6.3E-30 2.2E-34 232.8 3.7 166 3-192 483-661 (806)
9 3cf0_A Transitional endoplasmi 99.9 1.7E-25 5.8E-30 183.7 15.4 167 3-192 21-199 (301)
10 2x8a_A Nuclear valosin-contain 99.9 1.2E-24 4.2E-29 176.7 18.7 164 3-192 16-191 (274)
11 2ce7_A Cell division protein F 99.9 2.4E-24 8.1E-29 186.9 16.0 165 3-191 22-198 (476)
12 3h4m_A Proteasome-activating n 99.9 3.6E-24 1.2E-28 173.5 14.7 166 3-191 23-200 (285)
13 2qz4_A Paraplegin; AAA+, SPG7, 99.9 7.2E-24 2.5E-28 169.3 15.8 166 3-191 12-189 (262)
14 1xwi_A SKD1 protein; VPS4B, AA 99.9 9.8E-24 3.3E-28 175.0 13.9 161 3-191 18-191 (322)
15 3hu3_A Transitional endoplasmi 99.9 1.1E-23 3.6E-28 183.6 13.2 164 3-192 210-385 (489)
16 1lv7_A FTSH; alpha/beta domain 99.9 2.2E-23 7.4E-28 166.9 13.1 165 3-191 18-194 (257)
17 3eie_A Vacuolar protein sortin 99.9 8.8E-24 3E-28 174.9 10.6 161 3-191 24-196 (322)
18 2r62_A Cell division protease 99.9 8.3E-24 2.8E-28 170.1 5.8 168 3-192 17-196 (268)
19 2qp9_X Vacuolar protein sortin 99.9 3.4E-23 1.2E-27 173.8 9.3 161 3-191 57-229 (355)
20 2dhr_A FTSH; AAA+ protein, hex 99.9 3.6E-22 1.2E-26 174.2 14.3 166 3-192 37-214 (499)
21 2zan_A Vacuolar protein sortin 99.9 3.4E-22 1.2E-26 172.4 11.9 161 3-191 140-313 (444)
22 3t15_A Ribulose bisphosphate c 99.9 2.3E-22 7.9E-27 164.6 7.8 146 27-191 32-197 (293)
23 3vfd_A Spastin; ATPase, microt 99.9 9.7E-22 3.3E-26 166.5 11.4 161 3-191 121-294 (389)
24 1ixz_A ATP-dependent metallopr 99.9 4.4E-21 1.5E-25 153.2 12.9 165 3-191 22-198 (254)
25 3b9p_A CG5977-PA, isoform A; A 99.8 6.4E-21 2.2E-25 155.3 12.6 162 3-191 27-201 (297)
26 3d8b_A Fidgetin-like protein 1 99.8 2.9E-21 1E-25 162.1 10.6 161 3-191 90-263 (357)
27 1iy2_A ATP-dependent metallopr 99.8 2.9E-20 9.9E-25 150.6 12.4 165 3-191 46-222 (278)
28 1ypw_A Transitional endoplasmi 99.8 2.1E-23 7.3E-28 191.2 -6.9 167 3-192 483-661 (806)
29 1ypw_A Transitional endoplasmi 99.8 3.9E-20 1.3E-24 169.6 11.2 163 3-191 210-384 (806)
30 3syl_A Protein CBBX; photosynt 99.8 1.5E-18 5E-23 141.8 14.2 156 3-191 37-216 (309)
31 3pfi_A Holliday junction ATP-d 99.7 8.3E-17 2.8E-21 133.1 16.0 129 31-191 55-196 (338)
32 2c9o_A RUVB-like 1; hexameric 99.7 8E-19 2.7E-23 151.6 3.0 153 27-187 59-234 (456)
33 1ofh_A ATP-dependent HSL prote 99.7 3.6E-17 1.2E-21 133.1 11.7 140 31-190 50-213 (310)
34 1hqc_A RUVB; extended AAA-ATPa 99.7 6.6E-16 2.3E-20 126.7 15.4 129 31-191 38-180 (324)
35 3hws_A ATP-dependent CLP prote 99.7 3.3E-16 1.1E-20 131.2 11.5 67 30-96 50-130 (363)
36 1d2n_A N-ethylmaleimide-sensit 99.7 1.2E-15 4.2E-20 122.7 13.2 135 27-189 60-209 (272)
37 3u61_B DNA polymerase accessor 99.6 1.2E-15 4E-20 125.6 12.5 118 31-190 48-176 (324)
38 1g41_A Heat shock protein HSLU 99.6 3.8E-17 1.3E-21 140.4 3.4 154 3-188 21-188 (444)
39 1jbk_A CLPB protein; beta barr 99.6 1E-15 3.6E-20 115.1 10.6 125 30-189 42-195 (195)
40 2chg_A Replication factor C sm 99.6 4.9E-15 1.7E-19 113.9 13.4 118 33-191 40-173 (226)
41 3te6_A Regulatory protein SIR3 99.6 3E-15 1E-19 123.7 12.4 122 29-191 43-210 (318)
42 4fcw_A Chaperone protein CLPB; 99.6 7.9E-15 2.7E-19 119.6 13.6 126 33-192 49-229 (311)
43 1um8_A ATP-dependent CLP prote 99.6 4E-14 1.4E-18 119.0 18.3 67 30-96 71-151 (376)
44 1sxj_A Activator 1 95 kDa subu 99.6 5.2E-15 1.8E-19 129.6 13.3 120 30-190 76-220 (516)
45 3uk6_A RUVB-like 2; hexameric 99.6 7.9E-15 2.7E-19 122.3 13.7 122 28-191 67-271 (368)
46 3m6a_A ATP-dependent protease 99.6 2.9E-15 9.9E-20 132.0 10.9 133 31-192 108-266 (543)
47 3pvs_A Replication-associated 99.6 1E-14 3.6E-19 125.7 11.5 116 32-191 51-177 (447)
48 2v1u_A Cell division control p 99.6 1.1E-14 3.6E-19 121.5 10.0 129 30-191 43-213 (387)
49 2r44_A Uncharacterized protein 99.6 1.9E-14 6.4E-19 118.8 10.9 128 32-191 47-197 (331)
50 1njg_A DNA polymerase III subu 99.6 9.4E-14 3.2E-18 107.7 13.9 119 32-191 46-197 (250)
51 1l8q_A Chromosomal replication 99.5 5.6E-15 1.9E-19 121.7 7.1 123 31-191 37-178 (324)
52 3bos_A Putative DNA replicatio 99.5 1.1E-14 3.6E-19 113.8 7.8 124 30-191 51-186 (242)
53 3pxi_A Negative regulator of g 99.5 5.6E-14 1.9E-18 128.1 12.9 125 33-191 523-674 (758)
54 1r6b_X CLPA protein; AAA+, N-t 99.5 1.7E-13 5.9E-18 124.7 14.6 125 33-191 490-665 (758)
55 2z4s_A Chromosomal replication 99.5 2.9E-14 9.8E-19 122.7 8.4 122 31-191 130-275 (440)
56 3n70_A Transport activator; si 99.5 3.9E-14 1.3E-18 104.0 7.8 64 31-96 24-90 (145)
57 2qby_B CDC6 homolog 3, cell di 99.5 1.1E-13 3.6E-18 115.8 11.4 121 31-191 45-209 (384)
58 1r6b_X CLPA protein; AAA+, N-t 99.5 6.9E-13 2.4E-17 120.8 16.5 130 28-191 204-361 (758)
59 1fnn_A CDC6P, cell division co 99.5 5.6E-13 1.9E-17 111.3 14.0 123 33-191 46-205 (389)
60 2p65_A Hypothetical protein PF 99.5 1.8E-13 6.3E-18 102.6 9.9 117 30-180 42-187 (187)
61 2chq_A Replication factor C sm 99.5 1.1E-13 3.8E-18 112.7 8.7 118 33-191 40-173 (319)
62 1sxj_B Activator 1 37 kDa subu 99.5 3.4E-13 1.1E-17 110.0 11.5 118 33-191 44-178 (323)
63 1iqp_A RFCS; clamp loader, ext 99.5 3.4E-13 1.2E-17 110.1 11.0 118 33-191 48-181 (327)
64 1qvr_A CLPB protein; coiled co 99.5 4.6E-13 1.6E-17 123.5 12.9 127 30-191 190-344 (854)
65 2bjv_A PSP operon transcriptio 99.5 3.3E-13 1.1E-17 108.0 10.5 128 31-191 29-193 (265)
66 1sxj_D Activator 1 41 kDa subu 99.5 2.7E-13 9.1E-18 112.1 10.1 117 33-190 60-203 (353)
67 2qby_A CDC6 homolog 1, cell di 99.4 2.8E-13 9.5E-18 112.7 9.3 126 31-191 45-209 (386)
68 1jr3_A DNA polymerase III subu 99.4 1.8E-12 6.1E-17 107.9 14.0 119 32-191 39-190 (373)
69 1in4_A RUVB, holliday junction 99.4 2.3E-12 8E-17 106.8 14.1 128 32-191 52-192 (334)
70 3co5_A Putative two-component 99.4 9E-14 3.1E-18 101.8 4.9 62 32-96 28-89 (143)
71 1a5t_A Delta prime, HOLB; zinc 99.4 7.2E-12 2.5E-16 103.9 16.2 120 31-191 24-179 (334)
72 1ojl_A Transcriptional regulat 99.4 1.6E-12 5.4E-17 106.7 9.9 128 31-191 25-189 (304)
73 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 1.7E-12 5.7E-17 113.3 10.5 125 31-190 41-194 (500)
74 1qvr_A CLPB protein; coiled co 99.4 3.4E-12 1.2E-16 117.8 12.0 126 33-192 590-770 (854)
75 1sxj_E Activator 1 40 kDa subu 99.4 5.1E-12 1.7E-16 104.7 11.7 117 34-191 39-205 (354)
76 1g8p_A Magnesium-chelatase 38 99.3 1.8E-12 6.3E-17 107.0 8.5 125 32-190 46-230 (350)
77 3pxi_A Negative regulator of g 99.3 3.4E-12 1.1E-16 116.3 10.9 116 29-191 199-337 (758)
78 3pxg_A Negative regulator of g 99.3 4.2E-12 1.4E-16 109.9 10.8 116 29-191 199-337 (468)
79 1sxj_C Activator 1 40 kDa subu 99.3 3.4E-12 1.2E-16 105.7 9.5 117 33-190 48-180 (340)
80 2gno_A DNA polymerase III, gam 99.3 6.9E-12 2.4E-16 103.0 10.9 116 32-190 19-150 (305)
81 4akg_A Glutathione S-transfera 99.3 5E-12 1.7E-16 126.8 11.2 136 31-191 1267-1430(2695)
82 1w5s_A Origin recognition comp 99.2 1.6E-10 5.5E-15 97.1 11.3 130 31-190 50-226 (412)
83 2kjq_A DNAA-related protein; s 99.1 2.5E-10 8.5E-15 84.2 8.0 60 30-96 35-97 (149)
84 3f9v_A Minichromosome maintena 99.1 1.4E-11 4.7E-16 109.7 1.3 125 33-191 329-489 (595)
85 3ec2_A DNA replication protein 99.1 1.4E-10 4.9E-15 87.4 5.5 65 28-94 35-112 (180)
86 4akg_A Glutathione S-transfera 98.9 3E-09 1E-13 107.0 10.5 125 31-188 645-789 (2695)
87 2fna_A Conserved hypothetical 98.9 1.5E-08 5.1E-13 83.0 12.4 35 32-66 31-65 (357)
88 2r2a_A Uncharacterized protein 98.8 1.5E-08 5.2E-13 78.2 9.3 114 33-180 7-154 (199)
89 2w58_A DNAI, primosome compone 98.8 4.3E-09 1.5E-13 80.4 6.2 64 32-95 55-128 (202)
90 1tue_A Replication protein E1; 98.8 9.8E-09 3.3E-13 79.5 8.0 61 27-93 54-114 (212)
91 3cmw_A Protein RECA, recombina 98.8 5E-09 1.7E-13 101.8 6.8 124 4-142 1027-1207(1706)
92 3vkg_A Dynein heavy chain, cyt 98.8 1.2E-08 4E-13 103.7 9.4 136 31-191 1304-1468(3245)
93 1u0j_A DNA replication protein 98.8 1.6E-07 5.3E-12 75.5 14.2 59 29-94 102-160 (267)
94 3k1j_A LON protease, ATP-depen 98.7 2.2E-08 7.5E-13 89.1 7.9 25 32-56 61-85 (604)
95 3dzd_A Transcriptional regulat 98.7 1.1E-07 3.8E-12 79.8 11.8 126 32-191 153-315 (368)
96 2vhj_A Ntpase P4, P4; non- hyd 98.7 2.1E-08 7.1E-13 82.7 5.9 68 28-96 120-196 (331)
97 2qen_A Walker-type ATPase; unk 98.7 2.1E-07 7.3E-12 76.0 11.6 31 32-64 32-62 (350)
98 2qgz_A Helicase loader, putati 98.7 1.6E-08 5.4E-13 83.0 4.4 64 31-94 152-226 (308)
99 1ny5_A Transcriptional regulat 98.6 2.5E-07 8.5E-12 78.1 11.3 65 31-96 160-245 (387)
100 3vkg_A Dynein heavy chain, cyt 98.6 2.7E-07 9.4E-12 93.9 12.3 124 32-188 605-749 (3245)
101 1svm_A Large T antigen; AAA+ f 98.6 9.4E-08 3.2E-12 80.5 7.0 66 27-96 165-230 (377)
102 3cmu_A Protein RECA, recombina 98.3 9.8E-07 3.3E-11 87.1 8.1 76 21-96 1414-1519(2050)
103 1ye8_A Protein THEP1, hypothet 98.3 4.6E-06 1.6E-10 62.9 9.8 27 33-59 2-28 (178)
104 2cvh_A DNA repair and recombin 98.2 1.4E-05 4.9E-10 61.0 11.2 39 28-66 17-55 (220)
105 3kb2_A SPBC2 prophage-derived 98.1 2.8E-06 9.5E-11 62.5 5.1 31 33-63 3-33 (173)
106 3trf_A Shikimate kinase, SK; a 98.1 1.8E-06 6.2E-11 64.6 4.0 32 32-63 6-37 (185)
107 1qhx_A CPT, protein (chloramph 98.1 3.1E-06 1.1E-10 62.9 5.0 32 32-63 4-35 (178)
108 3vaa_A Shikimate kinase, SK; s 98.1 2.1E-06 7.3E-11 65.4 4.2 33 31-63 25-57 (199)
109 2rhm_A Putative kinase; P-loop 98.1 3.2E-06 1.1E-10 63.4 4.8 34 29-62 3-36 (193)
110 2w0m_A SSO2452; RECA, SSPF, un 98.1 3.3E-05 1.1E-09 59.2 10.6 36 28-63 20-58 (235)
111 1y63_A LMAJ004144AAA protein; 98.0 4.2E-06 1.5E-10 63.0 3.9 33 31-63 10-43 (184)
112 3e1s_A Exodeoxyribonuclease V, 98.0 2.9E-05 9.8E-10 68.7 9.7 33 32-64 205-240 (574)
113 3iij_A Coilin-interacting nucl 98.0 5.4E-06 1.8E-10 61.9 4.3 33 31-63 11-43 (180)
114 1gvn_B Zeta; postsegregational 98.0 9.1E-06 3.1E-10 65.8 5.9 34 31-64 33-66 (287)
115 1via_A Shikimate kinase; struc 98.0 5.9E-06 2E-10 61.4 4.5 31 33-63 6-36 (175)
116 1zuh_A Shikimate kinase; alpha 98.0 6.7E-06 2.3E-10 60.6 4.7 32 32-63 8-39 (168)
117 3hr8_A Protein RECA; alpha and 98.0 3.8E-05 1.3E-09 64.1 9.6 66 31-96 61-153 (356)
118 1kag_A SKI, shikimate kinase I 98.0 7.8E-06 2.7E-10 60.4 4.8 30 32-61 5-34 (173)
119 2iyv_A Shikimate kinase, SK; t 98.0 5.3E-06 1.8E-10 62.1 3.8 31 33-63 4-34 (184)
120 1e6c_A Shikimate kinase; phosp 97.9 1E-05 3.6E-10 59.6 4.5 31 33-63 4-34 (173)
121 2ze6_A Isopentenyl transferase 97.9 1E-05 3.4E-10 64.3 4.5 32 33-64 3-34 (253)
122 3lw7_A Adenylate kinase relate 97.9 1.1E-05 3.6E-10 59.2 4.3 29 33-62 3-31 (179)
123 2cdn_A Adenylate kinase; phosp 97.9 1.6E-05 5.4E-10 60.4 5.3 31 32-62 21-51 (201)
124 1qf9_A UMP/CMP kinase, protein 97.9 1.2E-05 4E-10 60.1 4.5 32 31-62 6-37 (194)
125 3f8t_A Predicted ATPase involv 97.9 1.3E-05 4.3E-10 69.3 5.1 61 33-96 241-314 (506)
126 1jr3_D DNA polymerase III, del 97.9 9.4E-05 3.2E-09 60.8 10.3 119 31-190 18-153 (343)
127 2c95_A Adenylate kinase 1; tra 97.9 1.4E-05 4.7E-10 60.1 4.8 31 32-62 10-40 (196)
128 1tev_A UMP-CMP kinase; ploop, 97.9 1.3E-05 4.5E-10 60.0 4.5 31 32-62 4-34 (196)
129 3cm0_A Adenylate kinase; ATP-b 97.9 1.2E-05 4E-10 60.1 4.2 30 33-62 6-35 (186)
130 3t61_A Gluconokinase; PSI-biol 97.8 1.4E-05 4.9E-10 60.7 4.5 32 32-63 19-50 (202)
131 3dl0_A Adenylate kinase; phosp 97.8 1.4E-05 4.7E-10 61.4 4.4 29 34-62 3-31 (216)
132 3umf_A Adenylate kinase; rossm 97.8 1.5E-05 5.2E-10 62.0 4.7 34 28-61 26-59 (217)
133 1kht_A Adenylate kinase; phosp 97.8 1.2E-05 4.1E-10 60.1 3.9 30 32-61 4-38 (192)
134 2pt5_A Shikimate kinase, SK; a 97.8 1.6E-05 5.6E-10 58.3 4.6 30 33-62 2-31 (168)
135 3fb4_A Adenylate kinase; psych 97.8 1.5E-05 5.1E-10 61.1 4.5 29 34-62 3-31 (216)
136 2bwj_A Adenylate kinase 5; pho 97.8 1E-05 3.6E-10 60.9 3.5 31 32-62 13-43 (199)
137 2p5t_B PEZT; postsegregational 97.8 1.8E-05 6E-10 62.7 5.0 36 31-66 32-67 (253)
138 2zr9_A Protein RECA, recombina 97.8 6.3E-05 2.1E-09 62.6 8.3 67 30-96 60-153 (349)
139 1aky_A Adenylate kinase; ATP:A 97.8 1.6E-05 5.5E-10 61.2 4.5 31 32-62 5-35 (220)
140 3be4_A Adenylate kinase; malar 97.8 1.6E-05 5.6E-10 61.3 4.4 30 33-62 7-36 (217)
141 3sr0_A Adenylate kinase; phosp 97.8 1.7E-05 5.9E-10 61.2 4.4 28 34-61 3-30 (206)
142 2orw_A Thymidine kinase; TMTK, 97.8 3.6E-05 1.2E-09 58.2 6.0 30 33-62 5-37 (184)
143 1zd8_A GTP:AMP phosphotransfer 97.8 1.8E-05 6E-10 61.4 4.3 31 32-62 8-38 (227)
144 1zp6_A Hypothetical protein AT 97.8 1.2E-05 3.9E-10 60.4 3.2 36 28-63 6-41 (191)
145 1xp8_A RECA protein, recombina 97.8 0.00017 5.9E-09 60.3 10.6 69 28-96 71-166 (366)
146 1ly1_A Polynucleotide kinase; 97.8 1.2E-05 4.2E-10 59.4 3.2 29 32-60 3-32 (181)
147 2vli_A Antibiotic resistance p 97.8 1.2E-05 4.1E-10 59.8 3.2 29 32-60 6-34 (183)
148 3lda_A DNA repair protein RAD5 97.8 6.2E-05 2.1E-09 63.8 7.9 39 28-66 175-222 (400)
149 1knq_A Gluconate kinase; ALFA/ 97.8 2.3E-05 7.9E-10 58.0 4.4 30 33-62 10-39 (175)
150 1ukz_A Uridylate kinase; trans 97.8 1.6E-05 5.4E-10 60.3 3.6 31 33-63 17-47 (203)
151 1ak2_A Adenylate kinase isoenz 97.8 2.7E-05 9.1E-10 60.7 5.0 31 32-62 17-47 (233)
152 1z6t_A APAF-1, apoptotic prote 97.7 0.00027 9.1E-09 62.1 11.7 22 32-53 148-169 (591)
153 3tlx_A Adenylate kinase 2; str 97.7 2E-05 6.9E-10 62.0 4.0 33 30-62 28-60 (243)
154 3io5_A Recombination and repai 97.7 0.00023 7.8E-09 58.6 10.3 68 28-96 26-125 (333)
155 4eun_A Thermoresistant glucoki 97.7 3E-05 1E-09 59.0 4.8 30 32-61 30-59 (200)
156 2pbr_A DTMP kinase, thymidylat 97.7 3.2E-05 1.1E-09 57.8 4.9 30 34-63 3-35 (195)
157 1e4v_A Adenylate kinase; trans 97.7 2.5E-05 8.4E-10 60.0 4.3 30 33-62 2-31 (214)
158 1zak_A Adenylate kinase; ATP:A 97.7 2.2E-05 7.5E-10 60.6 3.9 30 32-61 6-35 (222)
159 2bbw_A Adenylate kinase 4, AK4 97.7 2.9E-05 9.9E-10 60.9 4.6 31 31-61 27-57 (246)
160 2pez_A Bifunctional 3'-phospho 97.7 3.9E-05 1.3E-09 57.1 5.1 33 32-64 6-41 (179)
161 1u94_A RECA protein, recombina 97.7 0.00012 4E-09 61.1 8.5 69 28-96 60-155 (356)
162 1cke_A CK, MSSA, protein (cyti 97.7 3E-05 1E-09 59.7 4.5 30 32-61 6-35 (227)
163 2xb4_A Adenylate kinase; ATP-b 97.7 3.2E-05 1.1E-09 59.9 4.5 29 34-62 3-31 (223)
164 2jaq_A Deoxyguanosine kinase; 97.7 3.1E-05 1.1E-09 58.3 4.2 29 33-61 2-30 (205)
165 2z0h_A DTMP kinase, thymidylat 97.7 4.2E-05 1.4E-09 57.4 4.8 31 34-64 3-36 (197)
166 1nks_A Adenylate kinase; therm 97.7 2.2E-05 7.5E-10 58.6 2.9 24 33-56 3-26 (194)
167 3cmu_A Protein RECA, recombina 97.6 0.00011 3.7E-09 72.9 8.3 69 28-96 1078-1173(2050)
168 2v54_A DTMP kinase, thymidylat 97.6 4.6E-05 1.6E-09 57.6 4.6 33 32-64 5-38 (204)
169 2a5y_B CED-4; apoptosis; HET: 97.6 0.0012 4.2E-08 57.7 14.1 22 32-53 153-174 (549)
170 2if2_A Dephospho-COA kinase; a 97.6 4.6E-05 1.6E-09 57.8 4.1 30 33-63 3-32 (204)
171 3nwj_A ATSK2; P loop, shikimat 97.6 6.2E-05 2.1E-09 59.7 4.8 33 31-63 48-80 (250)
172 3crm_A TRNA delta(2)-isopenten 97.6 4.9E-05 1.7E-09 62.6 4.3 33 32-64 6-38 (323)
173 1vt4_I APAF-1 related killer D 97.6 0.0013 4.6E-08 61.9 14.1 22 32-53 151-172 (1221)
174 3ake_A Cytidylate kinase; CMP 97.6 6.4E-05 2.2E-09 56.9 4.5 31 33-63 4-34 (208)
175 1jjv_A Dephospho-COA kinase; P 97.6 5E-05 1.7E-09 57.7 3.8 29 33-62 4-32 (206)
176 2grj_A Dephospho-COA kinase; T 97.6 6.5E-05 2.2E-09 57.3 4.4 32 32-63 13-44 (192)
177 4gp7_A Metallophosphoesterase; 97.6 9.8E-05 3.3E-09 54.8 5.3 18 33-50 11-28 (171)
178 3r20_A Cytidylate kinase; stru 97.6 7.2E-05 2.5E-09 58.8 4.7 31 32-62 10-40 (233)
179 1n0w_A DNA repair protein RAD5 97.5 0.00017 5.8E-09 55.8 6.7 39 28-66 21-68 (243)
180 2plr_A DTMP kinase, probable t 97.5 5.6E-05 1.9E-09 57.3 3.8 26 33-58 6-31 (213)
181 3uie_A Adenylyl-sulfate kinase 97.5 0.0001 3.6E-09 55.9 5.3 25 31-55 25-49 (200)
182 2z43_A DNA repair and recombin 97.5 0.00017 5.8E-09 59.1 6.8 39 28-66 104-151 (324)
183 3a4m_A L-seryl-tRNA(SEC) kinas 97.5 8.7E-05 3E-09 58.9 4.8 31 33-63 6-39 (260)
184 3sfz_A APAF-1, apoptotic pepti 97.5 0.0008 2.8E-08 63.3 12.0 23 32-54 148-170 (1249)
185 4e22_A Cytidylate kinase; P-lo 97.5 0.0001 3.5E-09 58.3 5.0 29 33-61 29-57 (252)
186 1uf9_A TT1252 protein; P-loop, 97.5 9.1E-05 3.1E-09 55.8 4.2 31 32-63 9-39 (203)
187 2r8r_A Sensor protein; KDPD, P 97.5 0.002 6.8E-08 50.3 11.8 33 32-64 7-42 (228)
188 2b8t_A Thymidine kinase; deoxy 97.5 0.00039 1.3E-08 54.2 7.8 62 34-95 15-102 (223)
189 2wwf_A Thymidilate kinase, put 97.5 3.1E-05 1.1E-09 58.9 1.4 27 32-58 11-37 (212)
190 3upu_A ATP-dependent DNA helic 97.4 0.00013 4.6E-09 62.5 5.2 44 1-55 26-69 (459)
191 4a74_A DNA repair and recombin 97.4 0.00028 9.7E-09 54.0 6.6 28 28-55 22-49 (231)
192 1kgd_A CASK, peripheral plasma 97.4 9.9E-05 3.4E-09 55.2 3.8 25 32-56 6-30 (180)
193 2qor_A Guanylate kinase; phosp 97.4 0.0001 3.6E-09 56.1 4.0 27 30-56 11-37 (204)
194 3jvv_A Twitching mobility prot 97.4 0.00014 4.8E-09 60.6 5.0 23 33-55 125-147 (356)
195 1v5w_A DMC1, meiotic recombina 97.4 0.00035 1.2E-08 57.7 7.3 39 28-66 119-166 (343)
196 1vht_A Dephospho-COA kinase; s 97.4 0.00014 4.7E-09 55.8 4.5 30 32-62 5-34 (218)
197 4b3f_X DNA-binding protein smu 97.4 0.00021 7.3E-09 63.8 6.3 49 1-64 190-241 (646)
198 2fz4_A DNA repair protein RAD2 97.4 0.00068 2.3E-08 53.0 8.5 33 33-65 110-142 (237)
199 2j41_A Guanylate kinase; GMP, 97.4 0.0001 3.5E-09 55.6 3.4 25 31-55 6-30 (207)
200 1nn5_A Similar to deoxythymidy 97.4 5.7E-05 2E-09 57.4 1.9 25 32-56 10-34 (215)
201 1q3t_A Cytidylate kinase; nucl 97.4 0.00019 6.5E-09 55.9 4.9 31 32-62 17-47 (236)
202 2h92_A Cytidylate kinase; ross 97.4 0.00019 6.4E-09 54.9 4.7 31 32-62 4-34 (219)
203 1uj2_A Uridine-cytidine kinase 97.3 0.00013 4.6E-09 57.4 3.9 27 32-58 23-49 (252)
204 1rz3_A Hypothetical protein rb 97.3 0.00052 1.8E-08 52.1 7.0 33 32-64 23-58 (201)
205 3c8u_A Fructokinase; YP_612366 97.3 0.00019 6.6E-09 54.8 4.5 24 33-56 24-47 (208)
206 3cmw_A Protein RECA, recombina 97.3 0.0006 2.1E-08 66.8 8.6 70 27-96 30-126 (1706)
207 3b9q_A Chloroplast SRP recepto 97.3 0.00016 5.5E-09 58.9 4.1 23 33-55 102-124 (302)
208 2bdt_A BH3686; alpha-beta prot 97.3 0.00018 6.2E-09 53.8 4.0 25 33-57 4-28 (189)
209 3a8t_A Adenylate isopentenyltr 97.3 0.00011 3.8E-09 60.8 3.1 34 32-65 41-74 (339)
210 2qt1_A Nicotinamide riboside k 97.3 0.00011 3.6E-09 56.0 2.7 30 33-62 23-53 (207)
211 1odf_A YGR205W, hypothetical 3 97.3 0.00027 9.2E-09 57.2 5.1 26 31-56 31-56 (290)
212 3foz_A TRNA delta(2)-isopenten 97.3 0.00022 7.5E-09 58.4 4.4 34 31-64 10-43 (316)
213 2ga8_A Hypothetical 39.9 kDa p 97.3 0.00017 5.8E-09 60.1 3.6 30 32-61 25-54 (359)
214 2yvu_A Probable adenylyl-sulfa 97.2 0.00023 7.8E-09 53.2 3.9 25 32-56 14-38 (186)
215 3tau_A Guanylate kinase, GMP k 97.2 0.00019 6.5E-09 54.9 3.5 25 32-56 9-33 (208)
216 1ltq_A Polynucleotide kinase; 97.2 0.00019 6.4E-09 57.7 3.6 30 32-61 3-33 (301)
217 2og2_A Putative signal recogni 97.2 0.00028 9.4E-09 58.9 4.7 23 33-55 159-181 (359)
218 1htw_A HI0065; nucleotide-bind 97.2 0.00053 1.8E-08 50.5 5.7 23 33-55 35-57 (158)
219 3d3q_A TRNA delta(2)-isopenten 97.2 0.0002 6.9E-09 59.3 3.8 32 32-63 8-39 (340)
220 2dr3_A UPF0273 protein PH0284; 97.2 0.00036 1.2E-08 54.0 5.0 39 27-65 19-60 (247)
221 2zts_A Putative uncharacterize 97.2 0.00079 2.7E-08 52.0 7.0 50 28-79 27-80 (251)
222 3tr0_A Guanylate kinase, GMP k 97.2 0.00024 8E-09 53.6 3.9 25 32-56 8-32 (205)
223 2px0_A Flagellar biosynthesis 97.2 0.00094 3.2E-08 54.1 7.6 35 32-66 106-144 (296)
224 1w4r_A Thymidine kinase; type 97.2 0.0017 6E-08 49.5 8.7 62 34-96 23-104 (195)
225 2f6r_A COA synthase, bifunctio 97.2 0.00024 8.4E-09 57.0 4.1 29 33-62 77-105 (281)
226 2i1q_A DNA repair and recombin 97.2 0.0005 1.7E-08 56.0 5.9 27 28-54 95-121 (322)
227 1m7g_A Adenylylsulfate kinase; 97.2 0.00036 1.2E-08 53.3 4.7 35 29-63 23-61 (211)
228 3asz_A Uridine kinase; cytidin 97.2 0.00023 7.9E-09 54.1 3.6 29 33-61 8-38 (211)
229 2ehv_A Hypothetical protein PH 97.2 0.00019 6.5E-09 55.7 3.1 26 27-52 26-51 (251)
230 1pzn_A RAD51, DNA repair and r 97.2 0.00068 2.3E-08 56.2 6.5 39 28-66 128-175 (349)
231 1lvg_A Guanylate kinase, GMP k 97.1 0.0003 1E-08 53.4 3.7 24 32-55 5-28 (198)
232 3a00_A Guanylate kinase, GMP k 97.1 0.0003 1E-08 52.7 3.5 24 33-56 3-26 (186)
233 3fdi_A Uncharacterized protein 97.1 0.00033 1.1E-08 53.6 3.7 29 33-61 8-36 (201)
234 3zvl_A Bifunctional polynucleo 97.1 0.00024 8.3E-09 60.3 3.2 30 32-61 259-288 (416)
235 3exa_A TRNA delta(2)-isopenten 97.1 0.0003 1E-08 57.7 3.5 31 33-63 5-35 (322)
236 1ex7_A Guanylate kinase; subst 97.1 0.00045 1.5E-08 52.4 4.3 24 33-56 3-26 (186)
237 2qmh_A HPR kinase/phosphorylas 97.0 0.00037 1.3E-08 53.6 3.3 28 32-60 35-62 (205)
238 1z6g_A Guanylate kinase; struc 97.0 0.00043 1.5E-08 53.4 3.7 23 33-55 25-47 (218)
239 3bh0_A DNAB-like replicative h 97.0 0.0017 5.7E-08 53.0 7.4 39 27-65 64-105 (315)
240 3e70_C DPA, signal recognition 97.0 0.00084 2.9E-08 55.3 5.4 24 32-55 130-153 (328)
241 2v9p_A Replication protein E1; 97.0 0.00057 2E-08 55.8 4.4 28 28-55 123-150 (305)
242 2yhs_A FTSY, cell division pro 97.0 0.00038 1.3E-08 60.5 3.4 23 33-55 295-317 (503)
243 3gmt_A Adenylate kinase; ssgci 97.0 0.00063 2.1E-08 53.3 4.3 30 33-62 10-39 (230)
244 3ney_A 55 kDa erythrocyte memb 97.0 0.00057 1.9E-08 52.3 4.0 26 31-56 19-44 (197)
245 1znw_A Guanylate kinase, GMP k 97.0 0.00053 1.8E-08 52.2 3.7 26 31-56 20-45 (207)
246 1c9k_A COBU, adenosylcobinamid 97.0 0.00054 1.9E-08 51.7 3.7 33 34-67 2-34 (180)
247 1gtv_A TMK, thymidylate kinase 97.0 0.0002 6.7E-09 54.4 1.2 23 34-56 3-25 (214)
248 1kao_A RAP2A; GTP-binding prot 97.0 0.0018 6.3E-08 46.2 6.4 22 33-54 5-26 (167)
249 2v3c_C SRP54, signal recogniti 97.0 0.0012 4E-08 56.4 6.1 34 32-65 100-136 (432)
250 3kl4_A SRP54, signal recogniti 96.9 0.00059 2E-08 58.3 4.2 34 32-65 98-134 (433)
251 3dm5_A SRP54, signal recogniti 96.9 0.00063 2.2E-08 58.3 4.3 36 31-66 100-138 (443)
252 1nlf_A Regulatory protein REPA 96.9 0.00046 1.6E-08 55.0 3.2 28 28-55 27-54 (279)
253 3eph_A TRNA isopentenyltransfe 96.9 0.00063 2.1E-08 57.6 4.1 31 32-62 3-33 (409)
254 2eyu_A Twitching motility prot 96.9 0.00083 2.8E-08 53.5 4.6 32 24-55 18-49 (261)
255 4eaq_A DTMP kinase, thymidylat 96.9 0.0006 2E-08 53.1 3.6 28 34-61 29-58 (229)
256 1vma_A Cell division protein F 96.9 0.0004 1.4E-08 56.7 2.7 32 33-64 106-140 (306)
257 1r8s_A ADP-ribosylation factor 96.9 0.0035 1.2E-07 44.9 7.4 22 33-54 2-23 (164)
258 2jeo_A Uridine-cytidine kinase 96.9 0.00072 2.5E-08 52.9 3.9 35 24-58 16-52 (245)
259 1cr0_A DNA primase/helicase; R 96.9 0.00071 2.4E-08 54.3 3.9 29 27-55 31-59 (296)
260 1s96_A Guanylate kinase, GMP k 96.9 0.00073 2.5E-08 52.4 3.8 26 31-56 16-41 (219)
261 2gk6_A Regulator of nonsense t 96.9 0.0011 3.8E-08 59.0 5.4 23 33-55 197-219 (624)
262 1u8z_A RAS-related protein RAL 96.9 0.0021 7.1E-08 46.0 6.0 23 32-54 5-27 (168)
263 2ce2_X GTPase HRAS; signaling 96.9 0.002 7E-08 45.8 5.9 22 33-54 5-26 (166)
264 1c1y_A RAS-related protein RAP 96.8 0.0021 7.2E-08 46.1 5.8 22 33-54 5-26 (167)
265 1x6v_B Bifunctional 3'-phospho 96.8 0.00095 3.3E-08 59.5 4.6 31 33-63 54-87 (630)
266 2erx_A GTP-binding protein DI- 96.8 0.0023 8E-08 46.0 5.8 21 33-53 5-25 (172)
267 1z0j_A RAB-22, RAS-related pro 96.8 0.0018 6.2E-08 46.6 5.2 23 32-54 7-29 (170)
268 2ged_A SR-beta, signal recogni 96.8 0.0017 5.8E-08 48.1 5.1 24 31-54 48-71 (193)
269 3hdt_A Putative kinase; struct 96.8 0.00092 3.2E-08 52.0 3.7 29 33-61 16-44 (223)
270 2oil_A CATX-8, RAS-related pro 96.8 0.0021 7.2E-08 47.6 5.6 22 33-54 27-48 (193)
271 1ek0_A Protein (GTP-binding pr 96.8 0.0023 8E-08 45.9 5.7 22 33-54 5-26 (170)
272 2a9k_A RAS-related protein RAL 96.8 0.003 1E-07 46.1 6.4 23 32-54 19-41 (187)
273 1a7j_A Phosphoribulokinase; tr 96.8 0.00034 1.2E-08 56.6 1.1 36 33-68 7-45 (290)
274 2i3b_A HCR-ntpase, human cance 96.7 0.00096 3.3E-08 50.6 3.5 23 33-55 3-25 (189)
275 2ewv_A Twitching motility prot 96.7 0.0013 4.3E-08 55.1 4.5 28 28-55 133-160 (372)
276 1r2q_A RAS-related protein RAB 96.7 0.0027 9.1E-08 45.6 5.7 22 32-53 7-28 (170)
277 3lnc_A Guanylate kinase, GMP k 96.7 0.00047 1.6E-08 53.3 1.7 23 33-55 29-52 (231)
278 2atv_A RERG, RAS-like estrogen 96.7 0.0034 1.2E-07 46.7 6.4 25 30-54 27-51 (196)
279 1g5t_A COB(I)alamin adenosyltr 96.7 0.011 3.8E-07 45.1 9.1 33 32-64 29-64 (196)
280 2bov_A RAla, RAS-related prote 96.7 0.0036 1.2E-07 46.6 6.4 23 32-54 15-37 (206)
281 3tqc_A Pantothenate kinase; bi 96.7 0.0015 5.1E-08 53.6 4.5 24 33-56 94-117 (321)
282 3t1o_A Gliding protein MGLA; G 96.7 0.0047 1.6E-07 45.5 6.9 23 33-55 16-38 (198)
283 2p5s_A RAS and EF-hand domain 96.7 0.0037 1.2E-07 46.7 6.3 24 31-54 28-51 (199)
284 1z0f_A RAB14, member RAS oncog 96.7 0.0032 1.1E-07 45.6 5.8 23 32-54 16-38 (179)
285 1np6_A Molybdopterin-guanine d 96.6 0.0015 5.1E-08 48.9 3.9 24 32-55 7-30 (174)
286 4dsu_A GTPase KRAS, isoform 2B 96.6 0.0026 8.9E-08 46.6 5.2 23 32-54 5-27 (189)
287 3q72_A GTP-binding protein RAD 96.6 0.0011 3.9E-08 47.6 3.1 21 33-53 4-24 (166)
288 3kta_A Chromosome segregation 96.6 0.0012 4.2E-08 48.8 3.4 24 33-56 28-51 (182)
289 1zu4_A FTSY; GTPase, signal re 96.6 0.0017 5.8E-08 53.2 4.5 33 33-65 107-142 (320)
290 2wjy_A Regulator of nonsense t 96.6 0.0021 7.3E-08 58.9 5.4 23 33-55 373-395 (800)
291 2q6t_A DNAB replication FORK h 96.6 0.0045 1.6E-07 52.7 7.1 38 28-65 197-238 (444)
292 2hxs_A RAB-26, RAS-related pro 96.6 0.0043 1.5E-07 45.0 6.1 22 32-53 7-28 (178)
293 2efe_B Small GTP-binding prote 96.6 0.003 1E-07 46.0 5.2 23 32-54 13-35 (181)
294 2iut_A DNA translocase FTSK; n 96.6 0.021 7.1E-07 50.4 11.3 36 151-188 379-419 (574)
295 2j37_W Signal recognition part 96.6 0.0013 4.6E-08 57.2 3.7 34 32-65 102-138 (504)
296 3tkl_A RAS-related protein RAB 96.6 0.003 1E-07 46.7 5.1 22 33-54 18-39 (196)
297 3aez_A Pantothenate kinase; tr 96.6 0.0017 5.7E-08 53.1 3.9 24 33-56 92-115 (312)
298 3thx_B DNA mismatch repair pro 96.5 0.0074 2.5E-07 56.1 8.6 21 33-53 675-695 (918)
299 2www_A Methylmalonic aciduria 96.5 0.0069 2.4E-07 50.1 7.6 23 33-55 76-98 (349)
300 4i1u_A Dephospho-COA kinase; s 96.5 0.0016 5.6E-08 50.2 3.6 31 33-64 11-41 (210)
301 2fn4_A P23, RAS-related protei 96.5 0.003 1E-07 45.9 4.8 23 32-54 10-32 (181)
302 2r6a_A DNAB helicase, replicat 96.5 0.0034 1.2E-07 53.7 5.8 38 28-65 200-241 (454)
303 2y8e_A RAB-protein 6, GH09086P 96.5 0.003 1E-07 45.8 4.8 23 32-54 15-37 (179)
304 1rj9_A FTSY, signal recognitio 96.5 0.0019 6.5E-08 52.6 4.0 23 33-55 104-126 (304)
305 2ocp_A DGK, deoxyguanosine kin 96.5 0.0018 6.3E-08 50.3 3.8 24 33-56 4-27 (241)
306 1sq5_A Pantothenate kinase; P- 96.5 0.0015 5.2E-08 53.0 3.4 24 33-56 82-105 (308)
307 2axn_A 6-phosphofructo-2-kinas 96.5 0.0028 9.6E-08 55.3 5.2 24 33-56 37-60 (520)
308 4f4c_A Multidrug resistance pr 96.5 0.014 4.9E-07 56.2 10.5 24 33-56 446-469 (1321)
309 4edh_A DTMP kinase, thymidylat 96.5 0.0018 6.1E-08 50.0 3.5 30 33-62 8-40 (213)
310 3tif_A Uncharacterized ABC tra 96.5 0.0013 4.5E-08 51.4 2.8 23 33-55 33-55 (235)
311 2fg5_A RAB-22B, RAS-related pr 96.5 0.0034 1.2E-07 46.6 4.9 23 32-54 24-46 (192)
312 2gf0_A GTP-binding protein DI- 96.5 0.0048 1.7E-07 45.7 5.7 22 32-53 9-30 (199)
313 1p5z_B DCK, deoxycytidine kina 96.5 0.00068 2.3E-08 53.6 1.0 24 33-56 26-49 (263)
314 1xjc_A MOBB protein homolog; s 96.4 0.0021 7.1E-08 48.0 3.5 31 33-63 6-39 (169)
315 1m8p_A Sulfate adenylyltransfe 96.4 0.0022 7.7E-08 56.6 4.3 32 33-64 398-433 (573)
316 1zd9_A ADP-ribosylation factor 96.4 0.0037 1.3E-07 46.3 4.9 22 33-54 24-45 (188)
317 3kkq_A RAS-related protein M-R 96.4 0.0034 1.2E-07 45.9 4.7 22 33-54 20-41 (183)
318 1x3s_A RAS-related protein RAB 96.4 0.0036 1.2E-07 46.1 4.8 23 32-54 16-38 (195)
319 2bme_A RAB4A, RAS-related prot 96.4 0.0033 1.1E-07 46.0 4.5 23 32-54 11-33 (186)
320 1zj6_A ADP-ribosylation factor 96.4 0.006 2.1E-07 44.9 6.0 23 31-53 16-38 (187)
321 2cbz_A Multidrug resistance-as 96.4 0.0014 4.7E-08 51.4 2.5 23 33-55 33-55 (237)
322 2onk_A Molybdate/tungstate ABC 96.4 0.0018 6.1E-08 50.9 3.1 24 32-55 25-48 (240)
323 2qm8_A GTPase/ATPase; G protei 96.4 0.005 1.7E-07 50.7 6.0 34 22-55 44-79 (337)
324 1zbd_A Rabphilin-3A; G protein 96.4 0.0034 1.2E-07 46.8 4.6 23 32-54 9-31 (203)
325 1oix_A RAS-related protein RAB 96.4 0.0019 6.4E-08 48.3 3.1 23 33-55 31-53 (191)
326 2f9l_A RAB11B, member RAS onco 96.4 0.002 6.9E-08 48.2 3.3 22 33-54 7-28 (199)
327 1fzq_A ADP-ribosylation factor 96.4 0.0065 2.2E-07 44.7 6.0 23 32-54 17-39 (181)
328 2pcj_A ABC transporter, lipopr 96.4 0.0013 4.5E-08 51.0 2.2 23 33-55 32-54 (224)
329 4a1f_A DNAB helicase, replicat 96.4 0.0081 2.8E-07 49.6 7.0 38 28-65 43-83 (338)
330 2xzl_A ATP-dependent helicase 96.4 0.003 1E-07 57.9 4.9 21 33-53 377-397 (802)
331 3b85_A Phosphate starvation-in 96.4 0.0015 5.3E-08 50.1 2.5 22 33-54 24-45 (208)
332 3dz8_A RAS-related protein RAB 96.4 0.003 1E-07 46.8 4.1 23 33-55 25-47 (191)
333 3tmk_A Thymidylate kinase; pho 96.4 0.0036 1.2E-07 48.4 4.6 28 33-60 7-34 (216)
334 3sop_A Neuronal-specific septi 96.3 0.0021 7.3E-08 51.3 3.2 23 33-55 4-26 (270)
335 1b0u_A Histidine permease; ABC 96.3 0.0019 6.4E-08 51.4 2.8 23 33-55 34-56 (262)
336 2h57_A ADP-ribosylation factor 96.3 0.0028 9.6E-08 46.9 3.7 24 32-55 22-45 (190)
337 2dyk_A GTP-binding protein; GT 96.3 0.0026 8.7E-08 45.4 3.3 22 33-54 3-24 (161)
338 2hup_A RAS-related protein RAB 96.3 0.007 2.4E-07 45.4 5.9 22 33-54 31-52 (201)
339 1sky_E F1-ATPase, F1-ATP synth 96.3 0.011 3.9E-07 50.9 7.8 23 33-55 153-175 (473)
340 2il1_A RAB12; G-protein, GDP, 96.3 0.0048 1.6E-07 45.9 4.9 21 33-53 28-48 (192)
341 3tqf_A HPR(Ser) kinase; transf 96.3 0.0023 7.7E-08 48.1 3.0 24 31-54 16-39 (181)
342 1p9r_A General secretion pathw 96.3 0.0046 1.6E-07 52.6 5.3 24 33-56 169-192 (418)
343 3bgw_A DNAB-like replicative h 96.3 0.0079 2.7E-07 51.4 6.8 40 27-66 193-235 (444)
344 3v9p_A DTMP kinase, thymidylat 96.3 0.0019 6.6E-08 50.4 2.7 22 34-55 28-49 (227)
345 1z2a_A RAS-related protein RAB 96.3 0.0024 8.1E-08 45.8 3.0 23 32-54 6-28 (168)
346 3fvq_A Fe(3+) IONS import ATP- 96.3 0.0019 6.6E-08 53.8 2.8 22 34-55 33-54 (359)
347 2zu0_C Probable ATP-dependent 96.3 0.0026 8.7E-08 50.7 3.4 22 33-54 48-69 (267)
348 2ffh_A Protein (FFH); SRP54, s 96.3 0.0055 1.9E-07 52.2 5.6 34 32-65 99-135 (425)
349 2xxa_A Signal recognition part 96.3 0.0029 1E-07 54.0 3.9 37 31-67 100-140 (433)
350 1mv5_A LMRA, multidrug resista 96.3 0.002 6.7E-08 50.6 2.6 23 33-55 30-52 (243)
351 1lw7_A Transcriptional regulat 96.3 0.0026 8.8E-08 52.8 3.4 26 33-58 172-197 (365)
352 1g41_A Heat shock protein HSLU 96.2 0.0037 1.3E-07 53.5 4.4 93 77-189 245-346 (444)
353 2olj_A Amino acid ABC transpor 96.2 0.0022 7.6E-08 51.1 2.8 23 33-55 52-74 (263)
354 1sgw_A Putative ABC transporte 96.2 0.002 6.8E-08 49.8 2.5 23 33-55 37-59 (214)
355 2ius_A DNA translocase FTSK; n 96.2 0.02 6.8E-07 49.9 9.0 36 152-189 334-374 (512)
356 1g6h_A High-affinity branched- 96.2 0.0019 6.6E-08 51.1 2.4 23 33-55 35-57 (257)
357 2wji_A Ferrous iron transport 96.2 0.0028 9.4E-08 46.0 3.1 21 33-53 5-25 (165)
358 1nrj_B SR-beta, signal recogni 96.2 0.0034 1.2E-07 47.5 3.7 24 32-55 13-36 (218)
359 3gfo_A Cobalt import ATP-bindi 96.2 0.0021 7.2E-08 51.6 2.6 23 33-55 36-58 (275)
360 2dpy_A FLII, flagellum-specifi 96.2 0.0072 2.5E-07 51.6 6.1 36 22-58 147-184 (438)
361 2d2e_A SUFC protein; ABC-ATPas 96.2 0.0025 8.4E-08 50.3 2.9 22 33-54 31-52 (250)
362 2ghi_A Transport protein; mult 96.2 0.0024 8.1E-08 50.7 2.8 23 33-55 48-70 (260)
363 3vkw_A Replicase large subunit 96.2 0.0081 2.8E-07 51.4 6.2 21 33-53 163-183 (446)
364 2zej_A Dardarin, leucine-rich 96.2 0.0024 8E-08 47.3 2.6 21 33-53 4-24 (184)
365 3thx_A DNA mismatch repair pro 96.2 0.01 3.5E-07 55.3 7.4 61 33-93 664-752 (934)
366 2pze_A Cystic fibrosis transme 96.2 0.0021 7.3E-08 50.0 2.5 23 33-55 36-58 (229)
367 2ixe_A Antigen peptide transpo 96.2 0.0024 8.1E-08 51.1 2.8 23 33-55 47-69 (271)
368 2ff7_A Alpha-hemolysin translo 96.2 0.0021 7.1E-08 50.7 2.4 23 33-55 37-59 (247)
369 3lv8_A DTMP kinase, thymidylat 96.2 0.0029 1E-07 49.6 3.3 23 33-55 29-51 (236)
370 2fh5_B SR-beta, signal recogni 96.2 0.0071 2.4E-07 45.5 5.4 23 32-54 8-30 (214)
371 3rlf_A Maltose/maltodextrin im 96.2 0.0026 8.8E-08 53.5 3.0 23 33-55 31-53 (381)
372 2it1_A 362AA long hypothetical 96.2 0.0026 8.9E-08 53.1 3.0 22 34-55 32-53 (362)
373 2f1r_A Molybdopterin-guanine d 96.2 0.0016 5.4E-08 48.6 1.6 24 33-56 4-27 (171)
374 2nzj_A GTP-binding protein REM 96.2 0.0031 1.1E-07 45.6 3.1 22 32-53 5-26 (175)
375 1z47_A CYSA, putative ABC-tran 96.2 0.0027 9.2E-08 52.8 3.1 23 33-55 43-65 (355)
376 1ji0_A ABC transporter; ATP bi 96.2 0.0022 7.6E-08 50.2 2.4 23 33-55 34-56 (240)
377 2gza_A Type IV secretion syste 96.2 0.0016 5.4E-08 54.2 1.6 27 30-56 174-200 (361)
378 1wms_A RAB-9, RAB9, RAS-relate 96.2 0.0034 1.2E-07 45.5 3.3 23 32-54 8-30 (177)
379 2yyz_A Sugar ABC transporter, 96.1 0.0027 9.2E-08 52.9 3.0 23 33-55 31-53 (359)
380 2b6h_A ADP-ribosylation factor 96.1 0.0038 1.3E-07 46.5 3.6 23 31-53 29-51 (192)
381 1vpl_A ABC transporter, ATP-bi 96.1 0.0027 9.1E-08 50.4 2.8 23 33-55 43-65 (256)
382 1v43_A Sugar-binding transport 96.1 0.0028 9.4E-08 53.1 3.0 23 33-55 39-61 (372)
383 1z08_A RAS-related protein RAB 96.1 0.0036 1.2E-07 45.0 3.3 23 32-54 7-29 (170)
384 4g1u_C Hemin import ATP-bindin 96.1 0.0023 8E-08 51.0 2.5 23 33-55 39-61 (266)
385 1g8f_A Sulfate adenylyltransfe 96.1 0.003 1E-07 55.1 3.3 25 33-57 397-421 (511)
386 1ky3_A GTP-binding protein YPT 96.1 0.0037 1.2E-07 45.4 3.3 23 32-54 9-31 (182)
387 2yz2_A Putative ABC transporte 96.1 0.0027 9.4E-08 50.5 2.8 23 33-55 35-57 (266)
388 1bif_A 6-phosphofructo-2-kinas 96.1 0.0035 1.2E-07 53.8 3.7 25 32-56 40-64 (469)
389 1q57_A DNA primase/helicase; d 96.1 0.0093 3.2E-07 51.5 6.3 39 28-66 239-281 (503)
390 1g16_A RAS-related protein SEC 96.1 0.0034 1.2E-07 45.0 3.0 22 33-54 5-26 (170)
391 2qi9_C Vitamin B12 import ATP- 96.1 0.0025 8.7E-08 50.3 2.5 23 33-55 28-50 (249)
392 1g29_1 MALK, maltose transport 96.1 0.0031 1E-07 52.8 3.1 23 33-55 31-53 (372)
393 2oap_1 GSPE-2, type II secreti 96.1 0.0024 8.3E-08 55.6 2.5 26 31-56 260-285 (511)
394 4tmk_A Protein (thymidylate ki 96.1 0.0037 1.3E-07 48.2 3.3 23 33-55 5-27 (213)
395 3llu_A RAS-related GTP-binding 96.1 0.0082 2.8E-07 44.7 5.1 23 32-54 21-43 (196)
396 1f2t_A RAD50 ABC-ATPase; DNA d 96.1 0.0046 1.6E-07 44.8 3.5 23 33-55 25-47 (149)
397 1upt_A ARL1, ADP-ribosylation 96.0 0.0048 1.6E-07 44.4 3.7 23 31-53 7-29 (171)
398 2ihy_A ABC transporter, ATP-bi 96.0 0.0027 9.2E-08 51.0 2.5 23 33-55 49-71 (279)
399 3q85_A GTP-binding protein REM 96.0 0.0038 1.3E-07 44.9 3.1 20 33-52 4-23 (169)
400 3d31_A Sulfate/molybdate ABC t 96.0 0.0023 7.8E-08 53.1 2.1 23 33-55 28-50 (348)
401 2wjg_A FEOB, ferrous iron tran 96.0 0.0038 1.3E-07 45.9 3.1 21 33-53 9-29 (188)
402 3bc1_A RAS-related protein RAB 96.0 0.0042 1.4E-07 45.6 3.3 23 32-54 12-34 (195)
403 2obl_A ESCN; ATPase, hydrolase 96.0 0.0078 2.7E-07 49.8 5.2 32 28-59 66-99 (347)
404 3p32_A Probable GTPase RV1496/ 96.0 0.0073 2.5E-07 49.9 5.1 23 33-55 81-103 (355)
405 3ld9_A DTMP kinase, thymidylat 96.0 0.0049 1.7E-07 48.0 3.7 25 33-57 23-47 (223)
406 2nq2_C Hypothetical ABC transp 96.0 0.0029 9.8E-08 50.1 2.4 23 33-55 33-55 (253)
407 2lkc_A Translation initiation 96.0 0.0053 1.8E-07 44.5 3.6 23 31-53 8-30 (178)
408 3cr8_A Sulfate adenylyltranfer 96.0 0.0027 9.2E-08 55.9 2.3 25 32-56 370-394 (552)
409 3clv_A RAB5 protein, putative; 96.0 0.0047 1.6E-07 45.6 3.3 23 32-54 8-30 (208)
410 2npi_A Protein CLP1; CLP1-PCF1 96.0 0.0058 2E-07 52.6 4.3 28 28-55 135-162 (460)
411 3con_A GTPase NRAS; structural 95.9 0.0048 1.6E-07 45.5 3.3 22 33-54 23-44 (190)
412 1w36_D RECD, exodeoxyribonucle 95.9 0.0044 1.5E-07 55.1 3.5 24 32-55 165-188 (608)
413 3gd7_A Fusion complex of cysti 95.9 0.0035 1.2E-07 52.8 2.8 23 33-55 49-71 (390)
414 4f4c_A Multidrug resistance pr 95.9 0.017 6E-07 55.6 7.9 23 33-55 1107-1129(1321)
415 2pjz_A Hypothetical protein ST 95.9 0.0036 1.2E-07 49.9 2.6 23 33-55 32-54 (263)
416 2wsm_A Hydrogenase expression/ 95.9 0.0049 1.7E-07 46.8 3.3 25 32-56 31-55 (221)
417 2gj8_A MNME, tRNA modification 95.9 0.0044 1.5E-07 45.4 2.9 22 33-54 6-27 (172)
418 2pt7_A CAG-ALFA; ATPase, prote 95.9 0.0028 9.6E-08 52.1 2.0 26 31-56 171-196 (330)
419 1j8m_F SRP54, signal recogniti 95.9 0.0049 1.7E-07 49.9 3.4 33 33-65 100-135 (297)
420 1m7b_A RND3/RHOE small GTP-bin 95.9 0.0047 1.6E-07 45.5 3.0 23 32-54 8-30 (184)
421 4hlc_A DTMP kinase, thymidylat 95.9 0.01 3.4E-07 45.4 4.9 29 34-62 5-35 (205)
422 3tw8_B RAS-related protein RAB 95.9 0.0048 1.6E-07 44.7 3.0 22 32-53 10-31 (181)
423 3ice_A Transcription terminati 95.9 0.036 1.2E-06 46.8 8.6 23 33-55 176-198 (422)
424 1f6b_A SAR1; gtpases, N-termin 95.9 0.0067 2.3E-07 45.4 3.8 31 23-53 16-47 (198)
425 1oxx_K GLCV, glucose, ABC tran 95.8 0.0027 9.3E-08 52.8 1.6 23 33-55 33-55 (353)
426 2g6b_A RAS-related protein RAB 95.8 0.0057 2E-07 44.4 3.3 23 32-54 11-33 (180)
427 2c9o_A RUVB-like 1; hexameric 95.8 0.014 4.8E-07 49.8 6.1 66 83-190 296-377 (456)
428 1mh1_A RAC1; GTP-binding, GTPa 95.8 0.0058 2E-07 44.6 3.3 23 32-54 6-28 (186)
429 2gf9_A RAS-related protein RAB 95.8 0.0059 2E-07 45.1 3.3 22 33-54 24-45 (189)
430 1pui_A ENGB, probable GTP-bind 95.8 0.0023 7.9E-08 48.1 1.0 22 32-53 27-48 (210)
431 1wb9_A DNA mismatch repair pro 95.8 0.026 8.9E-07 51.7 8.1 22 33-54 609-630 (800)
432 4dkx_A RAS-related protein RAB 95.8 0.016 5.5E-07 44.5 5.8 21 33-53 15-35 (216)
433 3tui_C Methionine import ATP-b 95.8 0.0051 1.7E-07 51.4 3.0 22 34-55 57-78 (366)
434 2hf9_A Probable hydrogenase ni 95.8 0.0076 2.6E-07 45.8 3.9 24 32-55 39-62 (226)
435 2bbs_A Cystic fibrosis transme 95.8 0.0043 1.5E-07 50.1 2.6 22 34-55 67-88 (290)
436 3bwd_D RAC-like GTP-binding pr 95.8 0.0063 2.2E-07 44.3 3.3 24 31-54 8-31 (182)
437 3c5c_A RAS-like protein 12; GD 95.8 0.0064 2.2E-07 45.0 3.3 22 33-54 23-44 (187)
438 3hjn_A DTMP kinase, thymidylat 95.8 0.014 4.7E-07 44.3 5.2 31 34-64 3-36 (197)
439 3ihw_A Centg3; RAS, centaurin, 95.8 0.0064 2.2E-07 45.0 3.3 22 33-54 22-43 (184)
440 1m2o_B GTP-binding protein SAR 95.7 0.0058 2E-07 45.4 3.0 22 32-53 24-45 (190)
441 2cxx_A Probable GTP-binding pr 95.7 0.005 1.7E-07 45.1 2.7 22 33-54 3-24 (190)
442 1ls1_A Signal recognition part 95.7 0.0071 2.4E-07 48.8 3.7 31 33-63 100-133 (295)
443 1tf7_A KAIC; homohexamer, hexa 95.7 0.0056 1.9E-07 53.3 3.3 37 28-64 278-317 (525)
444 1z06_A RAS-related protein RAB 95.7 0.0068 2.3E-07 44.7 3.3 22 33-54 22-43 (189)
445 1svi_A GTP-binding protein YSX 95.7 0.0067 2.3E-07 44.8 3.3 24 31-54 23-46 (195)
446 1h65_A Chloroplast outer envel 95.7 0.016 5.5E-07 45.7 5.7 23 32-54 40-62 (270)
447 1tf7_A KAIC; homohexamer, hexa 95.7 0.0049 1.7E-07 53.6 2.8 36 29-64 37-76 (525)
448 1vg8_A RAS-related protein RAB 95.7 0.007 2.4E-07 45.1 3.3 23 32-54 9-31 (207)
449 2a5j_A RAS-related protein RAB 95.7 0.007 2.4E-07 44.8 3.3 22 33-54 23-44 (191)
450 1moz_A ARL1, ADP-ribosylation 95.7 0.0058 2E-07 44.6 2.8 24 30-53 17-40 (183)
451 3l0o_A Transcription terminati 95.7 0.021 7.3E-07 48.2 6.4 62 34-95 178-275 (427)
452 2iwr_A Centaurin gamma 1; ANK 95.7 0.0051 1.7E-07 44.8 2.4 23 32-54 8-30 (178)
453 3t5g_A GTP-binding protein RHE 95.7 0.0066 2.3E-07 44.2 3.0 22 32-53 7-28 (181)
454 3gj0_A GTP-binding nuclear pro 95.7 0.0068 2.3E-07 46.0 3.2 22 33-54 17-39 (221)
455 3qks_A DNA double-strand break 95.7 0.008 2.7E-07 45.7 3.5 25 33-57 25-49 (203)
456 3reg_A RHO-like small GTPase; 95.6 0.0073 2.5E-07 44.7 3.3 23 32-54 24-46 (194)
457 1yrb_A ATP(GTP)binding protein 95.6 0.014 4.8E-07 45.4 5.0 32 33-64 16-49 (262)
458 3nh6_A ATP-binding cassette SU 95.6 0.004 1.4E-07 50.7 1.8 23 33-55 82-104 (306)
459 3oes_A GTPase rhebl1; small GT 95.6 0.0072 2.5E-07 45.2 3.0 23 32-54 25-47 (201)
460 2bcg_Y Protein YP2, GTP-bindin 95.6 0.0072 2.5E-07 45.2 3.0 23 32-54 9-31 (206)
461 3pqc_A Probable GTP-binding pr 95.6 0.0076 2.6E-07 44.3 3.1 23 32-54 24-46 (195)
462 1tq4_A IIGP1, interferon-induc 95.6 0.01 3.4E-07 50.4 4.2 22 33-54 71-92 (413)
463 3cph_A RAS-related protein SEC 95.6 0.008 2.7E-07 45.0 3.3 23 32-54 21-43 (213)
464 3k53_A Ferrous iron transport 95.6 0.0066 2.3E-07 48.0 2.9 23 32-54 4-26 (271)
465 1dek_A Deoxynucleoside monopho 95.6 0.0082 2.8E-07 47.2 3.4 26 34-59 4-29 (241)
466 1gwn_A RHO-related GTP-binding 95.5 0.0076 2.6E-07 45.5 3.0 22 33-54 30-51 (205)
467 2vp4_A Deoxynucleoside kinase; 95.5 0.0039 1.3E-07 48.2 1.4 21 34-54 23-43 (230)
468 3dpu_A RAB family protein; roc 95.5 0.016 5.6E-07 50.4 5.5 22 33-54 43-64 (535)
469 3lxx_A GTPase IMAP family memb 95.5 0.008 2.7E-07 46.5 3.1 23 32-54 30-52 (239)
470 2ew1_A RAS-related protein RAB 95.5 0.0079 2.7E-07 45.3 3.0 23 32-54 27-49 (201)
471 2qtf_A Protein HFLX, GTP-bindi 95.5 0.015 5.2E-07 48.3 5.0 22 33-54 181-202 (364)
472 1ksh_A ARF-like protein 2; sma 95.5 0.0079 2.7E-07 44.1 2.9 23 31-53 18-40 (186)
473 2rcn_A Probable GTPase ENGC; Y 95.5 0.0079 2.7E-07 50.1 3.1 24 33-56 217-240 (358)
474 2qag_B Septin-6, protein NEDD5 95.5 0.0089 3E-07 50.9 3.5 21 34-54 45-65 (427)
475 4ag6_A VIRB4 ATPase, type IV s 95.4 0.023 7.8E-07 47.3 5.9 34 31-64 35-71 (392)
476 2fu5_C RAS-related protein RAB 95.4 0.005 1.7E-07 45.0 1.6 23 32-54 9-31 (183)
477 3qf7_A RAD50; ABC-ATPase, ATPa 95.4 0.0099 3.4E-07 49.4 3.5 22 34-55 26-47 (365)
478 2cjw_A GTP-binding protein GEM 95.4 0.01 3.4E-07 44.3 3.3 21 33-53 8-28 (192)
479 2atx_A Small GTP binding prote 95.4 0.0096 3.3E-07 44.0 3.1 22 33-54 20-41 (194)
480 2fv8_A H6, RHO-related GTP-bin 95.4 0.0095 3.2E-07 44.8 3.1 23 32-54 26-48 (207)
481 2p67_A LAO/AO transport system 95.4 0.024 8.2E-07 46.5 5.7 23 33-55 58-80 (341)
482 2yv5_A YJEQ protein; hydrolase 95.4 0.009 3.1E-07 48.3 3.1 23 33-56 167-189 (302)
483 2o52_A RAS-related protein RAB 95.3 0.0091 3.1E-07 44.7 2.9 22 32-53 26-47 (200)
484 2q3h_A RAS homolog gene family 95.3 0.01 3.4E-07 44.2 3.1 22 32-53 21-42 (201)
485 1u0l_A Probable GTPase ENGC; p 95.3 0.0072 2.4E-07 48.8 2.4 25 33-57 171-195 (301)
486 2f7s_A C25KG, RAS-related prot 95.3 0.01 3.6E-07 44.7 3.1 21 33-53 27-47 (217)
487 2gks_A Bifunctional SAT/APS ki 95.3 0.01 3.6E-07 52.0 3.5 31 33-63 374-407 (546)
488 2o8b_B DNA mismatch repair pro 95.3 0.072 2.5E-06 50.1 9.3 22 32-53 790-811 (1022)
489 3def_A T7I23.11 protein; chlor 95.3 0.028 9.6E-07 44.1 5.7 24 31-54 36-59 (262)
490 3cbq_A GTP-binding protein REM 95.3 0.008 2.7E-07 44.9 2.4 20 33-52 25-44 (195)
491 2gco_A H9, RHO-related GTP-bin 95.3 0.01 3.6E-07 44.3 3.0 22 33-54 27-48 (201)
492 1ko7_A HPR kinase/phosphatase; 95.3 0.014 4.8E-07 47.7 3.9 24 31-54 144-167 (314)
493 2h17_A ADP-ribosylation factor 95.3 0.0084 2.9E-07 43.9 2.4 23 32-54 22-44 (181)
494 4bas_A ADP-ribosylation factor 95.2 0.011 3.7E-07 43.7 3.0 21 33-53 19-39 (199)
495 2j1l_A RHO-related GTP-binding 95.2 0.011 3.7E-07 44.8 2.9 22 32-53 35-56 (214)
496 2j0v_A RAC-like GTP-binding pr 95.2 0.012 4E-07 44.3 3.0 23 32-54 10-32 (212)
497 3cpj_B GTP-binding protein YPT 95.2 0.013 4.4E-07 44.6 3.3 23 32-54 14-36 (223)
498 2qnr_A Septin-2, protein NEDD5 95.2 0.0086 2.9E-07 48.4 2.4 21 33-53 20-40 (301)
499 4gzl_A RAS-related C3 botulinu 95.2 0.012 4.1E-07 44.2 3.0 23 32-54 31-53 (204)
500 1qhl_A Protein (cell division 95.2 0.0041 1.4E-07 48.5 0.4 23 34-56 30-52 (227)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-34 Score=244.56 Aligned_cols=166 Identities=25% Similarity=0.319 Sum_probs=139.9
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC------hhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD------NTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (192)
+++|++|.+.+..++.+++.|..+|.++++|+|||||||||||++|+++|++++.+++.++++.+.+ +..++.+
T Consensus 154 ~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~l 233 (405)
T 4b4t_J 154 TKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVREL 233 (405)
T ss_dssp HHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999988754 4567777
Q ss_pred HHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..+. .||||||||+|.+++ .|....+ +.+.....+++.++..||++.... ..++
T Consensus 234 F~~Ar~~aP~IIFiDEiDai~~--~R~~~~~--------------~~~~~~~~~l~~lL~~lDg~~~~~-------~V~v 290 (405)
T 4b4t_J 234 FVMAREHAPSIIFMDEIDSIGS--TRVEGSG--------------GGDSEVQRTMLELLNQLDGFETSK-------NIKI 290 (405)
T ss_dssp HHHHHHTCSEEEEEESSSCCTT--SCSCSSS--------------GGGGHHHHHHHHHHHHHHTTTCCC-------CEEE
T ss_pred HHHHHHhCCceEeeecchhhcc--CCCCCCC--------------CCcHHHHHHHHHHHHhhhccCCCC-------CeEE
Confidence 77664 799999999999987 5443322 112233467899999999997543 2334
Q ss_pred EEe----CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 155 IKT----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 155 v~t----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
++| +.||++++|||||++.|+|+.|+.++|.+||+.+
T Consensus 291 IaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~ 331 (405)
T 4b4t_J 291 IMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIH 331 (405)
T ss_dssp EEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHH
T ss_pred EeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHH
Confidence 444 8999999999999999999999999999999875
No 2
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-33 Score=242.14 Aligned_cols=167 Identities=24% Similarity=0.307 Sum_probs=139.7
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC------hhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD------NTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (192)
+++|++|.+.+..++.+++.|..+|+.+++|+|||||||||||++|+++|++++.+++.++++.+.+ ...++..
T Consensus 187 ~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~ 266 (437)
T 4b4t_L 187 TEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREM 266 (437)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999988754 3456666
Q ss_pred HHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..+. .||||||||+|.++. .|..... ..+.....+++.||..||++.... ..+|
T Consensus 267 F~~A~~~~P~IifiDEiDai~~--~R~~~~~--------------~~~~~~~~~l~~lL~~lDg~~~~~-------~viv 323 (437)
T 4b4t_L 267 FAYAKEHEPCIIFMDEVDAIGG--RRFSEGT--------------SADREIQRTLMELLTQMDGFDNLG-------QTKI 323 (437)
T ss_dssp HHHHHHSCSEEEEEECCCSSSC--CCSSSCC--------------SSTTHHHHHHHHHHHHHHSSSCTT-------SSEE
T ss_pred HHHHHhcCCceeeeeccccccc--ccccCCC--------------CcchHHHHHHHHHHHHhhcccCCC-------CeEE
Confidence 66653 799999999999987 5543322 112234467889999999997543 2344
Q ss_pred EEe----CCccccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 155 IKT----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 155 v~t----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
|+| +.||++++|||||++.|+|+.|+.++|.+||+.++
T Consensus 324 I~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~ 365 (437)
T 4b4t_L 324 IMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHT 365 (437)
T ss_dssp EEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHH
T ss_pred EEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHh
Confidence 444 89999999999999999999999999999998763
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-33 Score=240.40 Aligned_cols=167 Identities=22% Similarity=0.241 Sum_probs=139.8
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC------hhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD------NTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (192)
+++|++|.+.+..++.+++.|..+|.++++|+|||||||||||++|+++|++++.+++.++++.+.+ +..++..
T Consensus 188 d~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~l 267 (437)
T 4b4t_I 188 ESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQI 267 (437)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999988754 3456677
Q ss_pred HHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..+. .||||||||+|.++. .|...... .+.....+++.+++.+|++.... ..++
T Consensus 268 F~~Ar~~aP~IIfiDEiDai~~--~R~~~~~~--------------~~~~~~~~l~~LL~~lDg~~~~~-------~ViV 324 (437)
T 4b4t_I 268 FKVAGENAPSIVFIDEIDAIGT--KRYDSNSG--------------GEREIQRTMLELLNQLDGFDDRG-------DVKV 324 (437)
T ss_dssp HHHHHHTCSEEEEEEEESSSSC--CCSCSSCS--------------SCCHHHHHHHHHHHHHHHCCCSS-------SEEE
T ss_pred HHHHHhcCCcEEEEehhhhhcc--cCCCCCCC--------------ccHHHHHHHHHHHHHhhCcCCCC-------CEEE
Confidence 76664 799999999999987 55433221 12233567889999999886542 2444
Q ss_pred EEe----CCccccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 155 IKT----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 155 v~t----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
|+| +.||++++|||||+++|+|+.|+.++|.+||+.++
T Consensus 325 IaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l 366 (437)
T 4b4t_I 325 IMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHT 366 (437)
T ss_dssp EEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHH
T ss_pred EEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHh
Confidence 444 89999999999999999999999999999998763
No 4
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-33 Score=242.09 Aligned_cols=166 Identities=22% Similarity=0.301 Sum_probs=139.3
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC------hhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD------NTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (192)
+++|++|.+.+..++.+++.|..+|.++++|+|||||||||||++|+++|++++.+++.++++.+.+ ...++..
T Consensus 187 ~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~l 266 (434)
T 4b4t_M 187 DKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDA 266 (434)
T ss_dssp HHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999999999999999988854 3456666
Q ss_pred HHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..+. .||||||||+|.++. .|...... .......+++.+++.+|++.... ..+|
T Consensus 267 F~~A~~~aP~IifiDEiDal~~--~R~~~~~~--------------~~~~~~~~~~~lL~~ldg~~~~~-------~ViV 323 (434)
T 4b4t_M 267 FALAKEKAPTIIFIDELDAIGT--KRFDSEKS--------------GDREVQRTMLELLNQLDGFSSDD-------RVKV 323 (434)
T ss_dssp HHHHHHHCSEEEEEECTHHHHC--CCSSGGGG--------------TTHHHHHHHHHHHHHHTTSCSSC-------SSEE
T ss_pred HHHHHhcCCeEEeecchhhhhh--ccCCCCCC--------------CchHHHHHHHHHHHHhhccCCCC-------CEEE
Confidence 66554 799999999999987 55443321 12233467889999999997543 2344
Q ss_pred EEe----CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 155 IKT----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 155 v~t----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
|+| +.||++++|||||++.|+|+.|+.++|.+||+.+
T Consensus 324 IaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~ 364 (434)
T 4b4t_M 324 LAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIH 364 (434)
T ss_dssp EEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHH
T ss_pred EEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHH
Confidence 444 8999999999999999999999999999999876
No 5
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-33 Score=237.92 Aligned_cols=166 Identities=23% Similarity=0.336 Sum_probs=140.3
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC------hhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD------NTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (192)
+++|++|.+.+..++.+++.|..+|.++++|+|||||||||||++|+++|++++.+++.++++.+.+ ...++.+
T Consensus 178 ~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~l 257 (428)
T 4b4t_K 178 DMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDV 257 (428)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999988754 4567777
Q ss_pred HHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..+. .|||+||||+|.++. .|..... +.+.....+++.|++.+|++.... ..++
T Consensus 258 F~~A~~~aP~IifiDEiD~i~~--~R~~~~~--------------~~~~~~~r~l~~lL~~ldg~~~~~-------~v~v 314 (428)
T 4b4t_K 258 FRLARENAPSIIFIDEVDSIAT--KRFDAQT--------------GSDREVQRILIELLTQMDGFDQST-------NVKV 314 (428)
T ss_dssp HHHHHHTCSEEEEEECTHHHHC--SCSSSCS--------------CCCCHHHHHHHHHHHHHHHSCSSC-------SEEE
T ss_pred HHHHHHcCCCeeechhhhhhhc--cccCCCC--------------CCChHHHHHHHHHHHHhhCCCCCC-------CEEE
Confidence 77664 799999999999987 5543322 112334578899999999997643 2444
Q ss_pred EEe----CCccccccCCCcceeEEEec-CCCHHHHHHHHHhc
Q 040463 155 IKT----DLTLNLLLRPGCMDMHIHMS-YCTPCGLKMLASNY 191 (192)
Q Consensus 155 v~t----~~l~~~l~~~~rf~~~i~~~-~p~~~~r~~i~~~~ 191 (192)
|+| +.||++++|||||++.|+|| .|+.++|.+||+.+
T Consensus 315 I~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~ 356 (428)
T 4b4t_K 315 IMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTI 356 (428)
T ss_dssp EEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHH
T ss_pred EEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHH
Confidence 444 89999999999999999997 89999999999875
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-33 Score=237.79 Aligned_cols=166 Identities=20% Similarity=0.232 Sum_probs=138.6
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC------hhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD------NTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (192)
+++|++|.+.+..++.+++.|..+|+.+++|+|||||||||||++|+++|++++.+++.++++.+.+ +..++..
T Consensus 215 ~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~l 294 (467)
T 4b4t_H 215 KDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVREL 294 (467)
T ss_dssp HHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999988854 3466777
Q ss_pred HHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..+. .||||||||+|.++. .|..... +.......+++.++..||++.... ..++
T Consensus 295 F~~Ar~~aP~IIfiDEiDai~~--~R~~~~~--------------~~~~~~~~~l~~lL~~lDg~~~~~-------~ViV 351 (467)
T 4b4t_H 295 FEMARTKKACIIFFDEIDAVGG--ARFDDGA--------------GGDNEVQRTMLELITQLDGFDPRG-------NIKV 351 (467)
T ss_dssp HHHHHHTCSEEEEEECCTTTSB--CCSSSSC--------------GGGGHHHHHHHHHHHHHHSSCCTT-------TEEE
T ss_pred HHHHHhcCCceEeecccccccc--cccCcCC--------------CccHHHHHHHHHHHHHhhccCCCC-------cEEE
Confidence 77664 799999999999987 5543322 112233457788999999886543 2334
Q ss_pred EEe----CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 155 IKT----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 155 v~t----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
|+| +.||++++|||||+++|+|+.|+.++|.+||+.+
T Consensus 352 IaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~ 392 (467)
T 4b4t_H 352 MFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIH 392 (467)
T ss_dssp EEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHH
T ss_pred EeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHH
Confidence 444 8999999999999999999999999999999875
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.96 E-value=2.2e-29 Score=229.25 Aligned_cols=163 Identities=20% Similarity=0.275 Sum_probs=139.0
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC------hhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD------NTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (192)
++++++|.+.+..++.+++.|..+|..+++|||||||||||||++|+++|++++.+++.++++.+.+ +..++..
T Consensus 210 ~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~l 289 (806)
T 3cf2_A 210 RKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKA 289 (806)
T ss_dssp CTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999999877643 4567888
Q ss_pred HHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..+. .|+||||||+|.+++ .+.+..+ .....+++.|+..|+++.... .|+
T Consensus 290 F~~A~~~~PsIIfIDEiDal~~--~r~~~~~-----------------~~~~riv~~LL~~mdg~~~~~--------~V~ 342 (806)
T 3cf2_A 290 FEEAEKNAPAIIFIDELDAIAP--KREKTHG-----------------EVERRIVSQLLTLMDGLKQRA--------HVI 342 (806)
T ss_dssp HHHHTTSCSEEEEEESGGGTCC--TTTTCCC-----------------TTHHHHHHHHHTHHHHCCGGG--------CEE
T ss_pred HHHHHHcCCeEEEEehhccccc--ccCCCCC-----------------hHHHHHHHHHHHHHhcccccC--------CEE
Confidence 88775 699999999999987 5443322 244678899999999997643 344
Q ss_pred EEe-----CCccccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 155 IKT-----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 155 v~t-----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
|++ +.+|++++|||||+++|+++.|+.++|.+||+.++
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l 385 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTC
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHh
Confidence 444 89999999999999999999999999999998764
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.95 E-value=6.3e-30 Score=232.82 Aligned_cols=166 Identities=18% Similarity=0.286 Sum_probs=130.8
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCC------ChhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLR------DNTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~------~~~~l~~~ 76 (192)
+++|++|.+.+..++.+++.|..+|..+++|+|||||||||||++|+++|++++.+++.++.+.+. ++..++++
T Consensus 483 ~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~l 562 (806)
T 3cf2_A 483 EDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREI 562 (806)
T ss_dssp HHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999887653 46678888
Q ss_pred HHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..++ .||||||||+|.++. .|..... +..+...++++.||.+||++.... .|+
T Consensus 563 F~~Ar~~~P~IifiDEiDsl~~--~R~~~~~--------------~~~~~~~rv~~~lL~~mdg~~~~~--------~V~ 618 (806)
T 3cf2_A 563 FDKARQAAPCVLFFDELDSIAK--ARGGNIG--------------DGGGAADRVINQILTEMDGMSTKK--------NVF 618 (806)
T ss_dssp HHHHHTTCSEEEECSCGGGCC------------------------------CHHHHHHHHHHHSSCSSS--------SEE
T ss_pred HHHHHHcCCceeechhhhHHhh--ccCCCCC--------------CCchHHHHHHHHHHHHHhCCCCCC--------CEE
Confidence 88774 699999999999987 5543322 113345688999999999997543 355
Q ss_pred EEe-----CCccccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 155 IKT-----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 155 v~t-----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
|++ +.||++++|||||++.|+++.|+.++|.+||+.++
T Consensus 619 vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp EECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred EEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 554 89999999999999999999999999999998764
No 9
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.93 E-value=1.7e-25 Score=183.73 Aligned_cols=167 Identities=19% Similarity=0.288 Sum_probs=132.0
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCC------ChhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLR------DNTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~------~~~~l~~~ 76 (192)
+++++.+.+.+..++.+++.|..++...+.++|||||||||||++++++|+.++.+++.+++..+. ....+...
T Consensus 21 ~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~ 100 (301)
T 3cf0_A 21 EDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREI 100 (301)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHH
Confidence 578999999999999999999999999888999999999999999999999999999999887652 23456666
Q ss_pred HHhc--CCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIAT--ENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~--~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..+ ..|+|+||||+|.+.. .+..... .........++.++..++++.... + .+|
T Consensus 101 f~~a~~~~p~il~iDEid~l~~--~~~~~~~--------------~~~~~~~~~~~~lL~~l~~~~~~~------~-v~v 157 (301)
T 3cf0_A 101 FDKARQAAPCVLFFDELDSIAK--ARGGNIG--------------DGGGAADRVINQILTEMDGMSTKK------N-VFI 157 (301)
T ss_dssp HHHHHHTCSEEEEECSTTHHHH--HHTTTTC--------------CSSCSCCHHHHHHHHHHHSSCTTS------S-EEE
T ss_pred HHHHHhcCCeEEEEEChHHHhh--ccCCCcC--------------CcchHHHHHHHHHHHHhhcccCCC------C-EEE
Confidence 6655 3689999999999875 3322211 011233467788999998875422 2 233
Q ss_pred EEe----CCccccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 155 IKT----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 155 v~t----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
|++ +.++++++|+|||+..++++.|+.++|.+|+++++
T Consensus 158 i~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l 199 (301)
T 3cf0_A 158 IGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 199 (301)
T ss_dssp EEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred EEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHH
Confidence 333 67999999999999999999999999999998753
No 10
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.93 E-value=1.2e-24 Score=176.72 Aligned_cols=164 Identities=18% Similarity=0.296 Sum_probs=129.6
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC------hhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD------NTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (192)
+++|+++.+.+..++.++..++.+++..+.|++|+||||||||++++++|..++..++.++...+.+ ...+..+
T Consensus 16 ~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~v 95 (274)
T 2x8a_A 16 EDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQV 95 (274)
T ss_dssp HHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999877643 2345566
Q ss_pred HHhc--CCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIAT--ENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~--~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..+ ..|+++++||+|.+.. .+.... ........+.++..|++..... ..++
T Consensus 96 f~~a~~~~p~i~~~Deid~~~~--~r~~~~-----------------~~~~~~~~~~~l~~Lsgg~~~~-------~~i~ 149 (274)
T 2x8a_A 96 FQRAKNSAPCVIFFDEVDALCP--RRSDRE-----------------TGASVRVVNQLLTEMDGLEARQ-------QVFI 149 (274)
T ss_dssp HHHHHHTCSEEEEEETCTTTCC----------------------------CTTHHHHHHHHHHTCCSTT-------CEEE
T ss_pred HHHHHhcCCCeEeeehhhhhhc--ccCCCc-----------------chHHHHHHHHHHHhhhcccccC-------CEEE
Confidence 6654 3699999999999875 332110 1122356788888898875432 2233
Q ss_pred EEe----CCccccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 155 IKT----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 155 v~t----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
+++ +.+|++++|||||++.|+++.|+.++|.+||+.++
T Consensus 150 ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 150 MAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 333 78999999999999999999999999999998763
No 11
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.92 E-value=2.4e-24 Score=186.92 Aligned_cols=165 Identities=22% Similarity=0.305 Sum_probs=127.2
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC------hhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD------NTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (192)
+++++++.+. ..++.++..+..+|...++|++|+||||||||++++++|...+.+++.++++.+.. ...++..
T Consensus 22 ~~~~~~l~e~-v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~l 100 (476)
T 2ce7_A 22 EEAIEELKEV-VEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDL 100 (476)
T ss_dssp HHHHHHHHHH-HHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHH
Confidence 5678888875 45678888999999988889999999999999999999999999999999887753 3455666
Q ss_pred HHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..+. .|+||||||+|.+.. .+..... +.+......++.++..++++.... ..+|
T Consensus 101 f~~A~~~~p~ILfIDEid~l~~--~r~~~~~--------------g~~~~~~~~l~~LL~~ld~~~~~~-------~viV 157 (476)
T 2ce7_A 101 FAQAKAHAPCIVFIDEIDAVGR--HRGAGLG--------------GGHDEREQTLNQLLVEMDGFDSKE-------GIIV 157 (476)
T ss_dssp HHHHHHTCSEEEEEETGGGTCC--C-----------------------CHHHHHHHHHHHHHHHSCGGG-------TEEE
T ss_pred HHHHHhcCCCEEEEechhhhhh--hcccccC--------------cCcHHHHHHHHHHHHHHhccCCCC-------CEEE
Confidence 66553 799999999999976 4332111 112233467889999998775432 2333
Q ss_pred EEe----CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 155 IKT----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 155 v~t----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
+++ +.+|++++|||||++.|.++.|+.++|.+|++.+
T Consensus 158 IaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~ 198 (476)
T 2ce7_A 158 MAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIH 198 (476)
T ss_dssp EEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHH
T ss_pred EEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHH
Confidence 333 6789999999999999999999999999999765
No 12
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.92 E-value=3.6e-24 Score=173.52 Aligned_cols=166 Identities=25% Similarity=0.289 Sum_probs=127.8
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC------hhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD------NTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (192)
+++++.+.+.+..++.+++.+..+|...+.++||+||||||||++++++|+.++.+++.+++..+.. ...+...
T Consensus 23 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 102 (285)
T 3h4m_A 23 EKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDI 102 (285)
T ss_dssp HHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHH
Confidence 6788999999999999999999999988889999999999999999999999999999999887743 2334444
Q ss_pred HHhc--CCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIAT--ENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~--~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
+..+ ..|+||||||+|.+.. .+.+... .........+..++..++++.... ..++
T Consensus 103 ~~~~~~~~~~vl~iDEid~l~~--~~~~~~~--------------~~~~~~~~~l~~ll~~~~~~~~~~-------~~~v 159 (285)
T 3h4m_A 103 FKLAKEKAPSIIFIDEIDAIAA--KRTDALT--------------GGDREVQRTLMQLLAEMDGFDARG-------DVKI 159 (285)
T ss_dssp HHHHHHTCSEEEEEETTHHHHB--CCSSSCC--------------GGGGHHHHHHHHHHHHHHTTCSSS-------SEEE
T ss_pred HHHHHHcCCeEEEEECHHHhcc--cCccccC--------------CccHHHHHHHHHHHHHhhCCCCCC-------CEEE
Confidence 4443 3689999999999975 3332211 001122345566666666654321 2334
Q ss_pred EEe----CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 155 IKT----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 155 v~t----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
|+| +.+++++++++||+..+.++.|+.++|.+|++.+
T Consensus 160 I~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~ 200 (285)
T 3h4m_A 160 IGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIH 200 (285)
T ss_dssp EEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHH
T ss_pred EEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHH
Confidence 444 7889999999999999999999999999999865
No 13
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.91 E-value=7.2e-24 Score=169.35 Aligned_cols=166 Identities=21% Similarity=0.313 Sum_probs=112.6
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC------hhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD------NTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (192)
+++++.+.+.+ .++..+..+..+|...+.++|||||||||||++|+++|+.++.+++.++++.+.. ...+...
T Consensus 12 ~~~~~~l~~~~-~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (262)
T 2qz4_A 12 HEAKLEVREFV-DYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSL 90 (262)
T ss_dssp HHHHHHHHHHH-HHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHH
Confidence 56777777754 4577778888888888889999999999999999999999999999999988743 2345555
Q ss_pred HHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..+. .|+||||||+|.+.. .+...... .........+..++..++..... ...++
T Consensus 91 ~~~a~~~~~~vl~iDeid~l~~--~~~~~~~~-------------~~~~~~~~~l~~ll~~~~~~~~~-------~~~~v 148 (262)
T 2qz4_A 91 FKEARARAPCIVYIDEIDAVGK--KRSTTMSG-------------FSNTEEEQTLNQLLVEMDGMGTT-------DHVIV 148 (262)
T ss_dssp HHHHHHTCSEEEEEECC----------------------------------CHHHHHHHHHHHTCCTT-------CCEEE
T ss_pred HHHHHhcCCeEEEEeCcchhhc--cccccccC-------------ccchhHHHHHHHHHHHhhCcCCC-------CCEEE
Confidence 55543 589999999999975 33221110 00123345677888888776432 22344
Q ss_pred EEe----CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 155 IKT----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 155 v~t----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
++| +.++++++++|||+..++++.|+.++|.+|++++
T Consensus 149 i~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~ 189 (262)
T 2qz4_A 149 LASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQH 189 (262)
T ss_dssp EEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHH
T ss_pred EecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHH
Confidence 444 6788999999999999999999999999999875
No 14
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.91 E-value=9.8e-24 Score=174.96 Aligned_cols=161 Identities=19% Similarity=0.238 Sum_probs=124.4
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHh-CCcEEEeecCCCCC------hhHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYL-NFDVCDLELTTLRD------NTKLRN 75 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~-~~~~~~i~~~~~~~------~~~l~~ 75 (192)
+++|+.+.+.+..++.+++.+.. +..+++++|||||||||||++|+++|+.+ +.+++.++++.+.. ...++.
T Consensus 18 ~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~ 96 (322)
T 1xwi_A 18 EGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKN 96 (322)
T ss_dssp HHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHH
Confidence 57899999999999988887763 24456799999999999999999999999 88999999887643 345566
Q ss_pred HHHhc--CCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceE
Q 040463 76 VLIAT--ENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQL 153 (192)
Q Consensus 76 ~~~~~--~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~i 153 (192)
.|..+ ..|+||||||+|.+.. .+.... ......+.+.++..++++.... ...+
T Consensus 97 lf~~a~~~~~~vl~iDEid~l~~--~~~~~~-----------------~~~~~~~~~~ll~~ld~~~~~~------~~v~ 151 (322)
T 1xwi_A 97 LFQLARENKPSIIFIDEIDSLCG--SRSENE-----------------SEAARRIKTEFLVQMQGVGVDN------DGIL 151 (322)
T ss_dssp HHHHHHHTSSEEEEEETTTGGGC--CSSSCC-----------------TTHHHHHHHHHHHHHHCSSSCC------TTEE
T ss_pred HHHHHHhcCCcEEEeecHHHhcc--cccccc-----------------chHHHHHHHHHHHHHhcccccC------CCEE
Confidence 66554 3799999999999976 333221 1123467788889998875321 2233
Q ss_pred EEEe----CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 154 IIKT----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 154 iv~t----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
++++ +.++++++| ||+..++++.|+.++|.+|++.+
T Consensus 152 vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~ 191 (322)
T 1xwi_A 152 VLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLH 191 (322)
T ss_dssp EEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHH
Confidence 3333 789999999 99999999999999999999875
No 15
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.90 E-value=1.1e-23 Score=183.65 Aligned_cols=164 Identities=19% Similarity=0.264 Sum_probs=131.4
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC------hhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD------NTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (192)
+++++++.+.+..++.+++.+..+|...+.++|||||||||||++|+++|+.++.+++.+++..+.+ ...+...
T Consensus 210 ~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~ 289 (489)
T 3hu3_A 210 RKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKA 289 (489)
T ss_dssp HHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHH
Confidence 5678899999999999999999999998899999999999999999999999999999999876642 2355666
Q ss_pred HHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..+. .|++|||||+|.+.. .+..... .....++..|+..+++..... . .++
T Consensus 290 f~~A~~~~p~iLfLDEId~l~~--~~~~~~~-----------------~~~~~~~~~LL~~ld~~~~~~------~-v~v 343 (489)
T 3hu3_A 290 FEEAEKNAPAIIFIDELDAIAP--KREKTHG-----------------EVERRIVSQLLTLMDGLKQRA------H-VIV 343 (489)
T ss_dssp HHHHHHTCSEEEEEESHHHHCB--CTTSCCC-----------------HHHHHHHHHHHHHHHHSCTTS------C-EEE
T ss_pred HHHHHhcCCcEEEecchhhhcc--ccccccc-----------------hHHHHHHHHHHHHhhccccCC------c-eEE
Confidence 66553 689999999999986 3322211 123467788888888765432 2 233
Q ss_pred EEe----CCccccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 155 IKT----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 155 v~t----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
|++ +.++++++++|||+..|+++.|+.++|.+|++.++
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~ 385 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHT
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHH
Confidence 333 56999999999999999999999999999998753
No 16
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.90 E-value=2.2e-23 Score=166.92 Aligned_cols=165 Identities=19% Similarity=0.312 Sum_probs=120.5
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC------hhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD------NTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (192)
+++++++.+.+ .++.++..++.++...+.+++|+||||||||++++++|+.++.+++.+++..+.. ...+...
T Consensus 18 ~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 96 (257)
T 1lv7_A 18 DEAKEEVAELV-EYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDM 96 (257)
T ss_dssp HHHHHHTHHHH-HHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHH
T ss_pred HHHHHHHHHHH-HHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHH
Confidence 56777777744 5677777788888888889999999999999999999999999999999887643 3456666
Q ss_pred HHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..+. .|+++|+||+|.+.. .+..... .........++.++..++++.... ..++
T Consensus 97 ~~~a~~~~~~il~iDeid~l~~--~~~~~~~--------------~~~~~~~~~~~~ll~~l~~~~~~~-------~~~v 153 (257)
T 1lv7_A 97 FEQAKKAAPCIIFIDEIDAVGR--QRGAGLG--------------GGHDEREQTLNQMLVEMDGFEGNE-------GIIV 153 (257)
T ss_dssp HHHHHTTCSEEEEETTHHHHTC--CCSTTSC--------------CTTCHHHHHHHHHHHHHHTCCSSS-------CEEE
T ss_pred HHHHHHcCCeeehhhhhhhhcc--CCCCCcC--------------CCchHHHHHHHHHHHHhhCcccCC-------CEEE
Confidence 66553 589999999999875 3221111 001122356778888888875432 2333
Q ss_pred EEe----CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 155 IKT----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 155 v~t----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
|++ +.+++++++++||+..+.++.|+.++|.+|++.+
T Consensus 154 I~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~ 194 (257)
T 1lv7_A 154 IAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVH 194 (257)
T ss_dssp EEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHH
T ss_pred EEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHH
Confidence 333 7799999999999999999999999999999865
No 17
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.90 E-value=8.8e-24 Score=174.93 Aligned_cols=161 Identities=19% Similarity=0.227 Sum_probs=122.3
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC------hhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD------NTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (192)
+++++.+.+.+..++..+..+.. +..++.++|||||||||||++|+++|+.++.+++.++++.+.+ ...+...
T Consensus 24 ~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~ 102 (322)
T 3eie_A 24 EGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQL 102 (322)
T ss_dssp HHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHH
Confidence 57888999988888888777665 3444569999999999999999999999999999999876532 2345555
Q ss_pred HHhc--CCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIAT--ENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~--~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..+ ..|+||||||+|.+.. .+.... ......+.+.++..++++.... ...++
T Consensus 103 f~~a~~~~~~vl~iDEid~l~~--~~~~~~-----------------~~~~~~~~~~ll~~l~~~~~~~------~~v~v 157 (322)
T 3eie_A 103 FAMARENKPSIIFIDQVDALTG--TRGEGE-----------------SEASRRIKTELLVQMNGVGNDS------QGVLV 157 (322)
T ss_dssp HHHHHHTSSEEEEEECGGGGSC--C-----------------------CCTHHHHHHHHHHHGGGGTSC------CCEEE
T ss_pred HHHHHhcCCeEEEechhhhhhc--cCCCCc-----------------chHHHHHHHHHHHHhccccccC------CceEE
Confidence 5544 3689999999999976 332221 1234567788999998875322 22334
Q ss_pred EEe----CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 155 IKT----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 155 v~t----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
|++ +.+++++++ ||+..++++.|+.++|.+|++.+
T Consensus 158 i~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~ 196 (322)
T 3eie_A 158 LGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEIN 196 (322)
T ss_dssp EEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHH
T ss_pred EEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHH
Confidence 433 689999999 99999999999999999999875
No 18
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.89 E-value=8.3e-24 Score=170.08 Aligned_cols=168 Identities=23% Similarity=0.332 Sum_probs=121.1
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC------hhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD------NTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (192)
+++++.+.+.+ .++..++.+..++...+.+++|+||||||||++|+++|+.++.+++.+++..+.. ...+...
T Consensus 17 ~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 95 (268)
T 2r62_A 17 EEAKEEVVEIV-DFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDL 95 (268)
T ss_dssp TTTHHHHHHHH-HHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTT
T ss_pred HHHHHHHHHHH-HHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHH
Confidence 56778888754 4688889999999988889999999999999999999999999999988876632 1222333
Q ss_pred HHhc--CCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIAT--ENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~--~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..+ ..|+||||||+|.+.. .+...... ..+......++.++..+++..... ...++
T Consensus 96 ~~~a~~~~~~vl~iDEid~l~~--~~~~~~~~-------------~~~~~~~~~~~~ll~~l~~~~~~~------~~v~v 154 (268)
T 2r62_A 96 FETAKKQAPSIIFIDEIDAIGK--SRAAGGVV-------------SGNDEREQTLNQLLAEMDGFGSEN------APVIV 154 (268)
T ss_dssp HHHHHHSCSCEEEESCGGGTTC-------------------------CCCSCSSTTTTTTTTTCSSCSC------SCCEE
T ss_pred HHHHHhcCCeEEEEeChhhhcc--cccccccC-------------CCchhHHHHHHHHHHHhhCcccCC------CCEEE
Confidence 3332 3689999999999976 33211100 112233345677777777664321 22344
Q ss_pred EEe----CCccccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 155 IKT----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 155 v~t----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
++| +.+++++++++||+..+.++.|+.++|.++++.++
T Consensus 155 i~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 155 LAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp EECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred EEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 444 67899999999999999999999999999998764
No 19
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.88 E-value=3.4e-23 Score=173.83 Aligned_cols=161 Identities=19% Similarity=0.227 Sum_probs=119.9
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCC------ChhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLR------DNTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~------~~~~l~~~ 76 (192)
+++++.|.+.+..++..+..+.. +..++.++|||||||||||++|+++|+.++.+++.+++..+. ....+...
T Consensus 57 ~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~ 135 (355)
T 2qp9_X 57 EGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQL 135 (355)
T ss_dssp GGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHH
Confidence 56788888888888888877765 445567899999999999999999999999999999887652 23445555
Q ss_pred HHhc--CCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIAT--ENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~--~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..+ ..|+||||||+|.+.. .+.... ......+.+.++..++++.... ...++
T Consensus 136 f~~a~~~~~~vl~iDEid~l~~--~r~~~~-----------------~~~~~~~~~~ll~~l~~~~~~~------~~v~v 190 (355)
T 2qp9_X 136 FAMARENKPSIIFIDQVDALTG--TRGEGE-----------------SEASRRIKTELLVQMNGVGNDS------QGVLV 190 (355)
T ss_dssp HHHHHHTSSEEEEEECGGGGTC-------------------------CTHHHHHHHHHHHHHHHCC---------CCEEE
T ss_pred HHHHHHcCCeEEEEechHhhcc--cCCCCc-----------------chHHHHHHHHHHHHhhcccccC------CCeEE
Confidence 5554 3799999999999976 332211 1123456788888888775321 22333
Q ss_pred EEe----CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 155 IKT----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 155 v~t----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
|++ +.++++++| ||+..++++.|+.++|.+|++.+
T Consensus 191 I~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~ 229 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEIN 229 (355)
T ss_dssp EEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHH
T ss_pred EeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHH
Confidence 433 678999999 99999999999999999999875
No 20
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.88 E-value=3.6e-22 Score=174.16 Aligned_cols=166 Identities=22% Similarity=0.316 Sum_probs=125.9
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC------hhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD------NTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (192)
+++++++.+ +..++.++..+..++...++|++|+||||||||++++++|..++.+++.++++.+.. ...+...
T Consensus 37 ~~~k~~l~~-lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~l 115 (499)
T 2dhr_A 37 EEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDL 115 (499)
T ss_dssp HHHHHHHHH-HHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHH
Confidence 567777777 445677777888888888889999999999999999999999999999999887643 2345666
Q ss_pred HHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..+. .|+|+||||+|.+.. .+..... .........++.++..++++... ...++
T Consensus 116 fq~a~~~~p~il~IDEId~l~~--~r~~~~~--------------~~~~e~~~~l~~LL~~Ldg~~~~-------~~viv 172 (499)
T 2dhr_A 116 FETAKRHAPCIVFIDEIDAVGR--KRGSGVG--------------GGNDEREQTLNQLLVEMDGFEKD-------TAIVV 172 (499)
T ss_dssp TTTSSSSSSCEEEEECGGGTCC--CSSSSTT--------------TSSHHHHHHHHHHHHHGGGCCSS-------CCCEE
T ss_pred HHHHHhcCCCEEEEehHHHHHH--hhccCcC--------------CCcHHHHHHHHHHHHHhcccccC-------ccEEE
Confidence 66654 489999999999875 3321100 00112235678888888877542 22344
Q ss_pred EEe----CCccccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 155 IKT----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 155 v~t----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
+++ +.+|++++||+||++.|.++.|+.++|.+|++.++
T Consensus 173 iAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~ 214 (499)
T 2dhr_A 173 MAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 214 (499)
T ss_dssp EECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTT
T ss_pred EEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHH
Confidence 444 66999999999999999999999999999998763
No 21
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.87 E-value=3.4e-22 Score=172.36 Aligned_cols=161 Identities=19% Similarity=0.222 Sum_probs=119.6
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHh-CCcEEEeecCCCCC------hhHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYL-NFDVCDLELTTLRD------NTKLRN 75 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~-~~~~~~i~~~~~~~------~~~l~~ 75 (192)
+++++.+.+.+..++.++..+.. +..+++++|||||||||||++|+++|+.+ +.+++.++++.+.+ ...+..
T Consensus 140 ~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~ 218 (444)
T 2zan_A 140 EGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKN 218 (444)
T ss_dssp HHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHH
Confidence 56788888888888887776653 23455799999999999999999999999 88999999887643 234555
Q ss_pred HHHhc--CCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceE
Q 040463 76 VLIAT--ENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQL 153 (192)
Q Consensus 76 ~~~~~--~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~i 153 (192)
.|..+ ..|+||||||+|.+.. .+.... ......+.+.++..++++.... ...+
T Consensus 219 ~f~~a~~~~~~vl~iDEid~l~~--~~~~~~-----------------~~~~~~~~~~lL~~l~~~~~~~------~~v~ 273 (444)
T 2zan_A 219 LFQLARENKPSIIFIDEIDSLCG--SRSENE-----------------SEAARRIKTEFLVQMQGVGVDN------DGIL 273 (444)
T ss_dssp HHHHHHHSCSEEEEESCTTTTCC--CSSCCC-----------------CGGGHHHHHHHHTTTTCSSCCC------SSCE
T ss_pred HHHHHHHcCCeEEEEechHhhcc--CCCCcc-----------------ccHHHHHHHHHHHHHhCcccCC------CCEE
Confidence 55544 3799999999999976 333221 1233467788888888875321 2233
Q ss_pred EEEe----CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 154 IIKT----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 154 iv~t----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
||.+ +.++++++| ||+..+.++.|+.++|.+|++.+
T Consensus 274 vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~ 313 (444)
T 2zan_A 274 VLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLH 313 (444)
T ss_dssp EEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHH
T ss_pred EEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHH
Confidence 3433 789999999 99999999999999999999875
No 22
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.86 E-value=2.3e-22 Score=164.61 Aligned_cols=146 Identities=14% Similarity=0.077 Sum_probs=96.0
Q ss_pred cCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC------hhHHHHHHHhc------CCCeEEEEeCCCcc
Q 040463 27 GRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD------NTKLRNVLIAT------ENKSILAVEDIDCS 94 (192)
Q Consensus 27 ~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~------~~~l~~~~~~~------~~~~Il~lDeid~l 94 (192)
+...+.++|||||||||||++|+++|++++.+++.++++.+.+ ...+.+.|..+ ..|+||||||+|.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 4566779999999999999999999999999999999877643 23455666555 26899999999998
Q ss_pred ccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccc---c-ccCCCcceEEEEe----CCccccccC
Q 040463 95 INLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAV---E-MRGSQYSQLIIKT----DLTLNLLLR 166 (192)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~---~-~~~~~~~~iiv~t----~~l~~~l~~ 166 (192)
.+ .+.+... .......+.+.|+..+|+..... . ........++|+| +.+|++++|
T Consensus 112 ~~--~~~~~~~---------------~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R 174 (293)
T 3t15_A 112 AG--RMGGTTQ---------------YTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIR 174 (293)
T ss_dssp -----------------------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHH
T ss_pred cC--CCCCCcc---------------ccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhC
Confidence 76 3322211 01233456788888887443100 0 0000122344555 789999999
Q ss_pred CCcceeEEEecCCCHHHHHHHHHhc
Q 040463 167 PGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 167 ~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
++||+..|.+ |+.++|.+|++.+
T Consensus 175 ~~R~d~~i~~--P~~~~r~~Il~~~ 197 (293)
T 3t15_A 175 DGRMEKFYWA--PTREDRIGVCTGI 197 (293)
T ss_dssp HHHEEEEEEC--CCHHHHHHHHHHH
T ss_pred CCCCceeEeC--cCHHHHHHHHHHh
Confidence 9999998874 6999999999865
No 23
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.86 E-value=9.7e-22 Score=166.53 Aligned_cols=161 Identities=19% Similarity=0.239 Sum_probs=116.6
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC------hhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD------NTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (192)
+++++.+.+.+..+..++..+..++.+ +.++|||||||||||++|+++|+.++.+++.++++.+.. ...+...
T Consensus 121 ~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~ 199 (389)
T 3vfd_A 121 DLAKQALQEIVILPSLRPELFTGLRAP-ARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRAL 199 (389)
T ss_dssp HHHHHHHHHHTHHHHHCTTTSCGGGCC-CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHhcccCCC-CceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHH
Confidence 567788888777777777666655543 468999999999999999999999999999999988753 2344555
Q ss_pred HHhc--CCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIAT--ENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~--~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..+ ..|+||||||+|.+.. .+.... .......+..++..+++..... ..+++
T Consensus 200 ~~~a~~~~~~il~iDEid~l~~--~~~~~~-----------------~~~~~~~~~~ll~~l~~~~~~~------~~~v~ 254 (389)
T 3vfd_A 200 FAVARELQPSIIFIDQVDSLLC--ERREGE-----------------HDASRRLKTEFLIEFDGVQSAG------DDRVL 254 (389)
T ss_dssp HHHHHHSSSEEEEEETGGGGC---------------------------CTHHHHHHHHHHHHHHHC-----------CEE
T ss_pred HHHHHhcCCeEEEEECchhhcc--cCCCcc-----------------chHHHHHHHHHHHHhhcccccC------CCCEE
Confidence 5444 3689999999999975 332211 1234567778888888775432 22344
Q ss_pred EEe-----CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 155 IKT-----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 155 v~t-----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
|++ +.+++++++ ||...+.++.|+.++|.+|++.+
T Consensus 255 vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~ 294 (389)
T 3vfd_A 255 VMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNL 294 (389)
T ss_dssp EEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHH
T ss_pred EEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHH
Confidence 443 689999999 99999999999999999999865
No 24
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.86 E-value=4.4e-21 Score=153.22 Aligned_cols=165 Identities=22% Similarity=0.317 Sum_probs=119.1
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCC----C--hhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLR----D--NTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~----~--~~~l~~~ 76 (192)
+++++++.+ +..++..+..+..++...+.|++|+||||||||+++++++..++..++.+++..+. . ...+...
T Consensus 22 ~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~ 100 (254)
T 1ixz_A 22 EEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDL 100 (254)
T ss_dssp HHHHHHHHH-HHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHH
Confidence 456777766 44456777888989988888999999999999999999999999999888865442 1 2345566
Q ss_pred HHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..+. .|+++++||+|.+.. .+..... .........++.++..+++.... ...++
T Consensus 101 ~~~~~~~~~~i~~~Deid~l~~--~~~~~~~--------------~~~~~~~~~~~~ll~~l~g~~~~-------~~~i~ 157 (254)
T 1ixz_A 101 FETAKRHAPCIVFIDEIDAVGR--KRGSGVG--------------GGNDEREQTLNQLLVEMDGFEKD-------TAIVV 157 (254)
T ss_dssp HHHHTTSSSEEEEEETHHHHHC-------------------------CHHHHHHHHHHHHHHHTCCTT-------CCEEE
T ss_pred HHHHHhcCCeEEEehhhhhhhc--ccCcccc--------------ccchHHHHHHHHHHHHHhCCCCC-------CCEEE
Confidence 66653 589999999999865 2221100 00112234567777777766432 22233
Q ss_pred EEe----CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 155 IKT----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 155 v~t----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
+++ +.+|++++|++||+..++++.|+.++|.+|++.+
T Consensus 158 ~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~ 198 (254)
T 1ixz_A 158 MAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIH 198 (254)
T ss_dssp EEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred EEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHH
Confidence 333 7899999999999999999999999999999764
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.85 E-value=6.4e-21 Score=155.30 Aligned_cols=162 Identities=17% Similarity=0.239 Sum_probs=115.7
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC------hhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD------NTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (192)
+++++.+.+.+.....+++.+..++. .+.++||+||||||||++++++|+.++.+++.++++.+.. ...++..
T Consensus 27 ~~~~~~l~~~i~~~~~~~~~~~~~~~-~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 105 (297)
T 3b9p_A 27 DVAKQALQEMVILPSVRPELFTGLRA-PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRAL 105 (297)
T ss_dssp HHHHHHHHHHTHHHHHCGGGSCGGGC-CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhCHHHHhcCCC-CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHH
Confidence 56778888877777776666655443 3468999999999999999999999999999999987643 2234444
Q ss_pred HHhc--CCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIAT--ENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~--~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
+..+ ..|+||||||+|.+.. .+.... ........+.++..+++..... . ..+++
T Consensus 106 ~~~~~~~~~~vl~iDEid~l~~--~~~~~~-----------------~~~~~~~~~~ll~~l~~~~~~~---~--~~~v~ 161 (297)
T 3b9p_A 106 FAVARHMQPSIIFIDEVDSLLS--ERSSSE-----------------HEASRRLKTEFLVEFDGLPGNP---D--GDRIV 161 (297)
T ss_dssp HHHHHHTCSEEEEEETGGGTSB--CC----------------------CCSHHHHHHHHHHHHHCC-----------CEE
T ss_pred HHHHHHcCCcEEEeccHHHhcc--ccccCc-----------------chHHHHHHHHHHHHHhcccccC---C--CCcEE
Confidence 4433 3789999999999976 332211 1123456677888888775421 0 11233
Q ss_pred E-Ee----CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 155 I-KT----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 155 v-~t----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
| ++ +.+++++++ ||+..+.++.|+.++|..|++.+
T Consensus 162 vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~ 201 (297)
T 3b9p_A 162 VLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRL 201 (297)
T ss_dssp EEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHH
T ss_pred EEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHH
Confidence 3 33 578999999 99999999999999999998764
No 26
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.85 E-value=2.9e-21 Score=162.06 Aligned_cols=161 Identities=14% Similarity=0.236 Sum_probs=116.2
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC------hhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD------NTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (192)
+++++.+.+.+..++..+..+...+ ..+.++||+||||||||++|+++|+.++.+++.++++.+.. ...+...
T Consensus 90 ~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~ 168 (357)
T 3d8b_A 90 EFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRAL 168 (357)
T ss_dssp HHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHH
Confidence 5677888888877777766655444 34568999999999999999999999999999999988753 2234444
Q ss_pred HHhc--CCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIAT--ENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~--~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
+..+ ..|+||||||+|.+.. .+.... .......++.++..+++..... ..+++
T Consensus 169 ~~~a~~~~~~vl~iDEid~l~~--~~~~~~-----------------~~~~~~~~~~lL~~l~~~~~~~------~~~v~ 223 (357)
T 3d8b_A 169 FAVARCQQPAVIFIDEIDSLLS--QRGDGE-----------------HESSRRIKTEFLVQLDGATTSS------EDRIL 223 (357)
T ss_dssp HHHHHHTCSEEEEEETHHHHTB--C-----------------------CHHHHHHHHHHHHHHC----C------CCCEE
T ss_pred HHHHHhcCCeEEEEeCchhhhc--cCCCCc-----------------chHHHHHHHHHHHHHhcccccC------CCCEE
Confidence 4443 3689999999999976 332111 1123456778888888765321 22343
Q ss_pred EE-e----CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 155 IK-T----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 155 v~-t----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
|+ + +.+++++++ ||...+.++.|+.++|.++++.+
T Consensus 224 vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~ 263 (357)
T 3d8b_A 224 VVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINL 263 (357)
T ss_dssp EEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHH
T ss_pred EEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHH
Confidence 33 3 679999999 99999999999999999998764
No 27
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.83 E-value=2.9e-20 Score=150.59 Aligned_cols=165 Identities=22% Similarity=0.323 Sum_probs=118.2
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC------hhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD------NTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (192)
+++++++.+ +..++..+..+..++...+.|++|+||||||||+++++++..++..++.+++..+.. ...+...
T Consensus 46 ~~~~~~l~~-l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~ 124 (278)
T 1iy2_A 46 EEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDL 124 (278)
T ss_dssp HHHHHHHHH-HHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHH
Confidence 466777766 445567788888899888889999999999999999999999999999888754421 2334555
Q ss_pred HHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..+. .|+++++||+|.+.. .+..... .........++.++..+++.... ...++
T Consensus 125 ~~~~~~~~~~i~~iDeid~l~~--~~~~~~~--------------~~~~~~~~~~~~ll~~lsgg~~~-------~~~i~ 181 (278)
T 1iy2_A 125 FETAKRHAPCIVFIDEIDAVGR--KRGSGVG--------------GGNDEREQTLNQLLVEMDGFEKD-------TAIVV 181 (278)
T ss_dssp HHHHHTSCSEEEEEETHHHHHC--C----------------------CHHHHHHHHHHHHHHTTCCTT-------CCEEE
T ss_pred HHHHHhcCCcEEehhhhHhhhc--ccccccC--------------CcchHHHHHHHHHHHHHhCCCCC-------CCEEE
Confidence 65543 589999999998864 2221100 00111234566777777766432 22233
Q ss_pred EEe----CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 155 IKT----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 155 v~t----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
+++ +.+|++++|++||+..++++.|+.++|.+|++.+
T Consensus 182 ~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~ 222 (278)
T 1iy2_A 182 MAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIH 222 (278)
T ss_dssp EEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHH
T ss_pred EEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHH
Confidence 333 7899999999999999999999999999999864
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.83 E-value=2.1e-23 Score=191.24 Aligned_cols=167 Identities=19% Similarity=0.293 Sum_probs=124.5
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC------hhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD------NTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (192)
+++|+.+.+.+..++.++..+..++..++.++||+||||||||++++++|..++.+++.++++.+.+ ...+...
T Consensus 483 ~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~ 562 (806)
T 1ypw_A 483 EDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREI 562 (806)
T ss_dssp CCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHH
T ss_pred hhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHH
Confidence 4567777776666666666666677777789999999999999999999999999999999887642 3466677
Q ss_pred HHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..+. .|+|+||||+|.+.. .+.+... ........+++.|+..|+++.... ..++
T Consensus 563 f~~a~~~~p~vl~iDEid~l~~--~r~~~~~--------------~~~~~~~~v~~~LL~~ld~~~~~~-------~v~v 619 (806)
T 1ypw_A 563 FDKARQAAPCVLFFDELDSIAK--ARGGNIG--------------DGGGAADRVINQILTEMDGMSTKK-------NVFI 619 (806)
T ss_dssp HHHHHHHCSBCCCCSSHHHHCC--TTTTCCS--------------HHHHHHHHHHHHHHTTCC-------------CCBC
T ss_pred HHHHHhcCCeEEEEEChhhhhh--hccCCCC--------------CcchhHHHHHHHHHHHHhcccccC-------CeEE
Confidence 77654 689999999999976 4432211 001123467888999998886432 2344
Q ss_pred EEe----CCccccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 155 IKT----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 155 v~t----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
++| +.+|++++|||||+..|+++.|+.++|.+||+.++
T Consensus 620 I~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l 661 (806)
T 1ypw_A 620 IGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp CCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTT
T ss_pred EEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHh
Confidence 444 68999999999999999999999999999998764
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.82 E-value=3.9e-20 Score=169.64 Aligned_cols=163 Identities=19% Similarity=0.270 Sum_probs=129.1
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC------hhHHHHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD------NTKLRNV 76 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (192)
+++++++.+.+..++.+++.+..++...+.+++|+||||||||++++++|..++.+++.+++..+.+ ...+...
T Consensus 210 ~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~v 289 (806)
T 1ypw_A 210 RKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKA 289 (806)
T ss_dssp SGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHH
Confidence 5678999999999999999999999999899999999999999999999999999999999866543 2345556
Q ss_pred HHhcC--CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 77 LIATE--NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 77 ~~~~~--~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
|..+. .|+++|+||+|.+.. .+..... .....+...++..+++..... . .++
T Consensus 290 f~~a~~~~p~il~iDEid~l~~--~~~~~~~-----------------~~~~~~~~~Ll~ll~g~~~~~------~-v~v 343 (806)
T 1ypw_A 290 FEEAEKNAPAIIFIDELDAIAP--KREKTHG-----------------EVERRIVSQLLTLMDGLKQRA------H-VIV 343 (806)
T ss_dssp HHHHHHHCSEEEEEESGGGTSC--TTSCCCS-----------------HHHHHHHHHHHHHHHSSCTTS------C-CEE
T ss_pred HHHHHhcCCcEEEeccHHHhhh--ccccccc-----------------hHHHHHHHHHHHHhhhhcccc------c-EEE
Confidence 65553 689999999999976 3321111 122456677888888775432 2 233
Q ss_pred EEe----CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 155 IKT----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 155 v~t----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
+++ +.+++++.+++||+..+.++.|+.++|.+|++.+
T Consensus 344 I~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~ 384 (806)
T 1ypw_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIH 384 (806)
T ss_dssp EEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHT
T ss_pred ecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHH
Confidence 333 6899999999999999999999999999999865
No 30
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.79 E-value=1.5e-18 Score=141.82 Aligned_cols=156 Identities=14% Similarity=0.116 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCCCC---ccEEEEcCCCCcHHHHHHHHHHHhC-------CcEEEeecCCCCC---
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRAWK---RGYLLYSPPRTGKSSLTAAMANYLN-------FDVCDLELTTLRD--- 69 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~---~~ilL~GppGtGKt~l~~~ia~~~~-------~~~~~i~~~~~~~--- 69 (192)
+++++.+.+.+..+. .+..+...|...+ .++||+||||||||++|+++|+.++ .+++.+++..+..
T Consensus 37 ~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~ 115 (309)
T 3syl_A 37 KPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYI 115 (309)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSST
T ss_pred HHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcc
Confidence 456777777555544 4566666675543 3599999999999999999999883 3788888877643
Q ss_pred ---hhHHHHHHHhcCCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCcccccccc
Q 040463 70 ---NTKLRNVLIATENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMR 146 (192)
Q Consensus 70 ---~~~l~~~~~~~~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 146 (192)
...+...+..+ .++||||||+|.+.. .+.+ .......++.|+..++....
T Consensus 116 g~~~~~~~~~~~~~-~~~vl~iDEid~l~~--~~~~-------------------~~~~~~~~~~Ll~~l~~~~~----- 168 (309)
T 3syl_A 116 GHTAPKTKEVLKRA-MGGVLFIDEAYYLYR--PDNE-------------------RDYGQEAIEILLQVMENNRD----- 168 (309)
T ss_dssp TCHHHHHHHHHHHH-TTSEEEEETGGGSCC--CC----------------------CCTHHHHHHHHHHHHHCTT-----
T ss_pred cccHHHHHHHHHhc-CCCEEEEEChhhhcc--CCCc-------------------ccccHHHHHHHHHHHhcCCC-----
Confidence 23445555554 678999999999975 2211 11234677788888876532
Q ss_pred CCCcceEEEEe--------CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 147 GSQYSQLIIKT--------DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 147 ~~~~~~iiv~t--------~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
...+|++| ..+++++++ ||+..++|++|+.+++.+|++++
T Consensus 169 ---~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~ 216 (309)
T 3syl_A 169 ---DLVVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHM 216 (309)
T ss_dssp ---TCEEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHH
T ss_pred ---CEEEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHH
Confidence 22344444 135789999 99999999999999999999875
No 31
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.73 E-value=8.3e-17 Score=133.12 Aligned_cols=129 Identities=14% Similarity=0.157 Sum_probs=99.5
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHHHHHHhcCCCeEEEEeCCCccccccCccccccCCCCC
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRNVLIATENKSILAVEDIDCSINLQGRHSQAKTLNPV 110 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~Il~lDeid~l~~~~~~~~~~~~~~~~ 110 (192)
..++||+||||||||++|+++++.++.+++.+++..+.....+...+.....+++|||||+|.+..
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~-------------- 120 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSP-------------- 120 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSHHHHHHHHHTCCTTCEEEEETGGGCCH--------------
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccchhHHHHHHHhccCCCEEEEechhhcCH--------------
Confidence 357999999999999999999999999999999999888888888888888899999999999854
Q ss_pred CCCCCCCcccCCCCCcchHHHHHHhhcCcccc---------ccccC-CCcceEEEEe---CCccccccCCCcceeEEEec
Q 040463 111 NSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRA---------VEMRG-SQYSQLIIKT---DLTLNLLLRPGCMDMHIHMS 177 (192)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~---------~~~~~-~~~~~iiv~t---~~l~~~l~~~~rf~~~i~~~ 177 (192)
.....|+..++..... ...+- .+...+|.+| ..+++++++ ||+..+.++
T Consensus 121 ----------------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~ 182 (338)
T 3pfi_A 121 ----------------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLE 182 (338)
T ss_dssp ----------------HHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECC
T ss_pred ----------------HHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCC
Confidence 3456666666543210 00000 0012333344 678899999 999999999
Q ss_pred CCCHHHHHHHHHhc
Q 040463 178 YCTPCGLKMLASNY 191 (192)
Q Consensus 178 ~p~~~~r~~i~~~~ 191 (192)
+|+.+++.++++++
T Consensus 183 ~~~~~e~~~il~~~ 196 (338)
T 3pfi_A 183 FYKDSELALILQKA 196 (338)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHH
Confidence 99999999998764
No 32
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.73 E-value=8e-19 Score=151.64 Aligned_cols=153 Identities=13% Similarity=0.047 Sum_probs=92.3
Q ss_pred cCCCCccEEEEcCCCCcHHHHHHHHHHHhC--CcEEEeecCCCCC-----hhHHHHHHHhc-----CCCeEEEEeCCCcc
Q 040463 27 GRAWKRGYLLYSPPRTGKSSLTAAMANYLN--FDVCDLELTTLRD-----NTKLRNVLIAT-----ENKSILAVEDIDCS 94 (192)
Q Consensus 27 ~~~~~~~ilL~GppGtGKt~l~~~ia~~~~--~~~~~i~~~~~~~-----~~~l~~~~~~~-----~~~~Il~lDeid~l 94 (192)
+..++.++|||||||||||++|+++|+.++ .+++.++++.+.+ ...+.+.|..+ ..|+|||+||+|.+
T Consensus 59 ~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~l 138 (456)
T 2c9o_A 59 KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTEL 138 (456)
T ss_dssp TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEEE
T ss_pred CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHHHHHHHHHHHhhhhcCCcEEEEechhhc
Confidence 455567999999999999999999999999 8999999887753 33477777776 36999999999999
Q ss_pred ccccCccccccCCCC-CCCCCC-CCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe-----CCccccccCC
Q 040463 95 INLQGRHSQAKTLNP-VNSNAI-KPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-----DLTLNLLLRP 167 (192)
Q Consensus 95 ~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-----~~l~~~l~~~ 167 (192)
+. .+........+ ...... ..............+.++..++...... ...++|++ +.+++++.||
T Consensus 139 ~~--~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~~------~~~v~i~attn~~~~ld~a~~r~ 210 (456)
T 2c9o_A 139 TP--CETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEA------GDVIYIEANSGAVKRQGRCDTYA 210 (456)
T ss_dssp EE--C--------------CEEEEEEETTEEEEEEECHHHHHHHHHTTCCT------TEEEEEETTTCCEEEEEEETTSC
T ss_pred cc--ccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhccCCC------CCEEEEEcCCCCcccCChhhcCC
Confidence 87 44333211000 000000 0000001111234455666554221111 22344433 7889999999
Q ss_pred Cccee--EEEecCCCH--HHHHHH
Q 040463 168 GCMDM--HIHMSYCTP--CGLKML 187 (192)
Q Consensus 168 ~rf~~--~i~~~~p~~--~~r~~i 187 (192)
+||+. .+.+|.|+. ++|.+|
T Consensus 211 ~rfd~~~~~~v~~p~~~~~~R~~i 234 (456)
T 2c9o_A 211 TEFDLEAEEYVPLPKGDVHKKKEI 234 (456)
T ss_dssp CTTSCSSSSEECCCCSCSEEEEEE
T ss_pred cccCcceeEecCCCchhHHHHHHH
Confidence 99988 456666643 444433
No 33
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.72 E-value=3.6e-17 Score=133.09 Aligned_cols=140 Identities=14% Similarity=0.239 Sum_probs=93.2
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC--------hhHHHHHHHhc-------CCCeEEEEeCCCccc
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD--------NTKLRNVLIAT-------ENKSILAVEDIDCSI 95 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~--------~~~l~~~~~~~-------~~~~Il~lDeid~l~ 95 (192)
+.+++|+||||||||++++++++.++.+++.++++.+.. ...+...+... ..++||||||+|.+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~ 129 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKIC 129 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcC
Confidence 458999999999999999999999999999999877643 22345544432 247999999999987
Q ss_pred cccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCcccccccc-CCCcceEEEEe--------CCccccccC
Q 040463 96 NLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMR-GSQYSQLIIKT--------DLTLNLLLR 166 (192)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~-~~~~~~iiv~t--------~~l~~~l~~ 166 (192)
. ....... ......+.+.|+..+++........ ......+++++ ..+++++++
T Consensus 130 ~--~~~~~~~----------------~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~ 191 (310)
T 1ofh_A 130 K--KGEYSGA----------------DVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG 191 (310)
T ss_dssp C--CSSCCSS----------------HHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHH
T ss_pred c--ccccccc----------------chhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHh
Confidence 5 2211100 0011123566777776542100000 00011233333 467888888
Q ss_pred CCcceeEEEecCCCHHHHHHHHHh
Q 040463 167 PGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 167 ~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
||+..+.|++|+.+++.+|+++
T Consensus 192 --R~~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 192 --RLPIRVELTALSAADFERILTE 213 (310)
T ss_dssp --TCCEEEECCCCCHHHHHHHHHS
T ss_pred --hCCceEEcCCcCHHHHHHHHHh
Confidence 9998899999999999999974
No 34
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.69 E-value=6.6e-16 Score=126.65 Aligned_cols=129 Identities=22% Similarity=0.238 Sum_probs=96.2
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHHHHHHh-cCCCeEEEEeCCCccccccCccccccCCCC
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRNVLIA-TENKSILAVEDIDCSINLQGRHSQAKTLNP 109 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~~~~~~-~~~~~Il~lDeid~l~~~~~~~~~~~~~~~ 109 (192)
..+++|+||||||||++|+++++.++.+++.+++..+.....+...+.. .+.+++|||||+|.+..
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~lDEi~~l~~------------- 104 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSR------------- 104 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHHHHHHHHTTTCCTTCEEEETTTTSCCH-------------
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChHHHHHHHHHhccCCCEEEEECCccccc-------------
Confidence 3579999999999999999999999999999999998877788887777 56889999999999854
Q ss_pred CCCCCCCCcccCCCCCcchHHHHHHhhcCcccc-----c----ccc-CCCcceEEEEe---CCccccccCCCcceeEEEe
Q 040463 110 VNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRA-----V----EMR-GSQYSQLIIKT---DLTLNLLLRPGCMDMHIHM 176 (192)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-----~----~~~-~~~~~~iiv~t---~~l~~~l~~~~rf~~~i~~ 176 (192)
.....++..++...-. . ..+ ......+|.+| ..+++.+.+ ||...+.+
T Consensus 105 -----------------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l 165 (324)
T 1hqc_A 105 -----------------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHL 165 (324)
T ss_dssp -----------------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEEC
T ss_pred -----------------chHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEec
Confidence 2344555555432100 0 000 00012344444 678888988 99889999
Q ss_pred cCCCHHHHHHHHHhc
Q 040463 177 SYCTPCGLKMLASNY 191 (192)
Q Consensus 177 ~~p~~~~r~~i~~~~ 191 (192)
++|+.+++.++++.+
T Consensus 166 ~~~~~~e~~~~l~~~ 180 (324)
T 1hqc_A 166 EYYTPEELAQGVMRD 180 (324)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999998764
No 35
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.67 E-value=3.3e-16 Score=131.23 Aligned_cols=67 Identities=24% Similarity=0.357 Sum_probs=54.1
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCCh--------hHHHHHHHhc------CCCeEEEEeCCCccc
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDN--------TKLRNVLIAT------ENKSILAVEDIDCSI 95 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~--------~~l~~~~~~~------~~~~Il~lDeid~l~ 95 (192)
.+.++||+||||||||++|+++|+.++.+++.++++.+... ..+...+... ..++||||||+|.+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~ 129 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKIS 129 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhc
Confidence 34689999999999999999999999999999999876532 2344444443 257999999999987
Q ss_pred c
Q 040463 96 N 96 (192)
Q Consensus 96 ~ 96 (192)
.
T Consensus 130 ~ 130 (363)
T 3hws_A 130 R 130 (363)
T ss_dssp C
T ss_pred c
Confidence 6
No 36
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.66 E-value=1.2e-15 Score=122.74 Aligned_cols=135 Identities=21% Similarity=0.223 Sum_probs=88.7
Q ss_pred cCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCC-C------hhHHHHHHHhc--CCCeEEEEeCCCccccc
Q 040463 27 GRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLR-D------NTKLRNVLIAT--ENKSILAVEDIDCSINL 97 (192)
Q Consensus 27 ~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~-~------~~~l~~~~~~~--~~~~Il~lDeid~l~~~ 97 (192)
+...+.++||+||||||||++|+++|+..+.+++.+++.... . ...+...+..+ ..+++|||||+|.+.+
T Consensus 60 ~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~- 138 (272)
T 1d2n_A 60 DRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLD- 138 (272)
T ss_dssp SSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTT-
T ss_pred CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhc-
Confidence 355566899999999999999999999999999988775421 1 13445555543 3689999999999865
Q ss_pred cCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe----CCccc-cccCCCccee
Q 040463 98 QGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT----DLTLN-LLLRPGCMDM 172 (192)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t----~~l~~-~l~~~~rf~~ 172 (192)
.+... .......+..|...++...... ...++++| +.+++ .+.+ ||..
T Consensus 139 -~~~~~------------------~~~~~~~l~~L~~~~~~~~~~~------~~~~ii~ttn~~~~l~~~~l~~--rf~~ 191 (272)
T 1d2n_A 139 -YVPIG------------------PRFSNLVLQALLVLLKKAPPQG------RKLLIIGTTSRKDVLQEMEMLN--AFST 191 (272)
T ss_dssp -CBTTT------------------TBCCHHHHHHHHHHTTCCCSTT------CEEEEEEEESCHHHHHHTTCTT--TSSE
T ss_pred -cCCCC------------------hhHHHHHHHHHHHHhcCccCCC------CCEEEEEecCChhhcchhhhhc--ccce
Confidence 22111 1122345555556565543221 22334444 33666 5566 9999
Q ss_pred EEEecCCCH-HHHHHHHH
Q 040463 173 HIHMSYCTP-CGLKMLAS 189 (192)
Q Consensus 173 ~i~~~~p~~-~~r~~i~~ 189 (192)
.|.+|+++. ++..+++.
T Consensus 192 ~i~~p~l~~r~~i~~i~~ 209 (272)
T 1d2n_A 192 TIHVPNIATGEQLLEALE 209 (272)
T ss_dssp EEECCCEEEHHHHHHHHH
T ss_pred EEcCCCccHHHHHHHHHH
Confidence 999998877 66555554
No 37
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.65 E-value=1.2e-15 Score=125.63 Aligned_cols=118 Identities=17% Similarity=0.179 Sum_probs=89.0
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHHHHHHhc----C---CCeEEEEeCCCccc-cccCccc
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRNVLIAT----E---NKSILAVEDIDCSI-NLQGRHS 102 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~~~~~~~----~---~~~Il~lDeid~l~-~~~~~~~ 102 (192)
+..+|++||||||||++++++|+.++.+++.++++... ...+...+... . .+.|++|||+|.+. .
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~------ 120 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLA------ 120 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGH------
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcH------
Confidence 34578889999999999999999999999999988754 44444433322 1 57999999999985 3
Q ss_pred cccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---CCccccccCCCcceeEEEecCC
Q 040463 103 QAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNLLLRPGCMDMHIHMSYC 179 (192)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~~l~~~l~~~~rf~~~i~~~~p 179 (192)
...+.|+..++....+ .++|+++ ..+++++++ ||. .+.|++|
T Consensus 121 ------------------------~~~~~L~~~le~~~~~--------~~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~ 165 (324)
T 3u61_B 121 ------------------------ESQRHLRSFMEAYSSN--------CSIIITANNIDGIIKPLQS--RCR-VITFGQP 165 (324)
T ss_dssp ------------------------HHHHHHHHHHHHHGGG--------CEEEEEESSGGGSCTTHHH--HSE-EEECCCC
T ss_pred ------------------------HHHHHHHHHHHhCCCC--------cEEEEEeCCccccCHHHHh--hCc-EEEeCCC
Confidence 3456677767655432 2455655 678999999 995 6999999
Q ss_pred CHHHHHHHHHh
Q 040463 180 TPCGLKMLASN 190 (192)
Q Consensus 180 ~~~~r~~i~~~ 190 (192)
+.+++.+|++.
T Consensus 166 ~~~e~~~il~~ 176 (324)
T 3u61_B 166 TDEDKIEMMKQ 176 (324)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99998777654
No 38
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.65 E-value=3.8e-17 Score=140.37 Aligned_cols=154 Identities=13% Similarity=0.113 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhcCC-CCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC--------hhHH
Q 040463 3 SNMKHMKMDDLERFVKRKEFYRNVGRA-WKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD--------NTKL 73 (192)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~~~~~~~~~~-~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~--------~~~l 73 (192)
++.|+.+...+...+.+...+..++.. .+.++||+||||||||++++++|+.++.+++.++++.+.. ...+
T Consensus 21 e~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~l 100 (444)
T 1g41_A 21 ADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSII 100 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHH
Confidence 566777777776666555544433322 3568999999999999999999999999999998865432 3344
Q ss_pred HHHHHhcCCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceE
Q 040463 74 RNVLIATENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQL 153 (192)
Q Consensus 74 ~~~~~~~~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~i 153 (192)
+..+..+. .++++||++.+.. ... ......+++.|+..+|++.... .+
T Consensus 101 r~lf~~a~--~~~~~De~d~~~~--~~~--------------------~~~e~rvl~~LL~~~dg~~~~~--------~v 148 (444)
T 1g41_A 101 RDLTDSAM--KLVRQQEIAKNRA--RAE--------------------DVAEERILDALLPPAKNQWGEV--------EN 148 (444)
T ss_dssp HHHHHHHH--HHHHHHHHHSCC----------------------------------------------------------
T ss_pred HHHHHHHH--hcchhhhhhhhhc--cch--------------------hhHHHHHHHHHHHHhhcccccc--------cc
Confidence 55554432 2334777776543 111 1234578899999999986543 23
Q ss_pred EEE-e---CCccccccCCCcceeEEEecCCCHH-HHHHHH
Q 040463 154 IIK-T---DLTLNLLLRPGCMDMHIHMSYCTPC-GLKMLA 188 (192)
Q Consensus 154 iv~-t---~~l~~~l~~~~rf~~~i~~~~p~~~-~r~~i~ 188 (192)
+.. | +.+|++|+|||||++.|+++.|+.. .|.+|+
T Consensus 149 ~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 149 HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp ----------------------------------------
T ss_pred ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 222 4 8999999999999999999999998 666664
No 39
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.64 E-value=1e-15 Score=115.07 Aligned_cols=125 Identities=15% Similarity=0.154 Sum_probs=83.1
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEeecCCCCC--------hhHHHHHHH---hcCCCeEEEE
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANYL----------NFDVCDLELTTLRD--------NTKLRNVLI---ATENKSILAV 88 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~~----------~~~~~~i~~~~~~~--------~~~l~~~~~---~~~~~~Il~l 88 (192)
.+.+++|+||||||||++++++++.+ +.+++.+++..+.. ...+...+. ....+.||+|
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i 121 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFI 121 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEE
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 34579999999999999999999986 67788887765431 112333333 3456889999
Q ss_pred eCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---C-----Cc
Q 040463 89 EDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---D-----LT 160 (192)
Q Consensus 89 Deid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~-----~l 160 (192)
||+|.+.. .+... ......+.+...++.- ...+|++| + .+
T Consensus 122 De~~~l~~--~~~~~--------------------~~~~~~~~l~~~~~~~----------~~~~i~~~~~~~~~~~~~~ 169 (195)
T 1jbk_A 122 DELHTMVG--AGKAD--------------------GAMDAGNMLKPALARG----------ELHCVGATTLDEYRQYIEK 169 (195)
T ss_dssp ETGGGGTT----------------------------CCCCHHHHHHHHHTT----------SCCEEEEECHHHHHHHTTT
T ss_pred eCHHHHhc--cCccc--------------------chHHHHHHHHHhhccC----------CeEEEEeCCHHHHHHHHhc
Confidence 99999865 21111 1112333333333221 22355555 2 67
Q ss_pred cccccCCCcceeEEEecCCCHHHHHHHHH
Q 040463 161 LNLLLRPGCMDMHIHMSYCTPCGLKMLAS 189 (192)
Q Consensus 161 ~~~l~~~~rf~~~i~~~~p~~~~r~~i~~ 189 (192)
++++.+ ||. .+.+++|+.+++.+|++
T Consensus 170 ~~~l~~--r~~-~i~~~~p~~~~~~~il~ 195 (195)
T 1jbk_A 170 DAALER--RFQ-KVFVAEPSVEDTIAILR 195 (195)
T ss_dssp CHHHHT--TEE-EEECCCCCHHHHHTTCC
T ss_pred CHHHHH--Hhc-eeecCCCCHHHHHHHhC
Confidence 899999 998 69999999999998763
No 40
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.63 E-value=4.9e-15 Score=113.86 Aligned_cols=118 Identities=14% Similarity=0.160 Sum_probs=86.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEeecCCCCChhHHHHHHHh--------cCCCeEEEEeCCCccccccC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL-----NFDVCDLELTTLRDNTKLRNVLIA--------TENKSILAVEDIDCSINLQG 99 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~-----~~~~~~i~~~~~~~~~~l~~~~~~--------~~~~~Il~lDeid~l~~~~~ 99 (192)
.++|+||||||||++++++++.+ ...++.+++........+...+.. ...+.+|+|||+|.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--- 116 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA--- 116 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH---
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH---
Confidence 59999999999999999999976 456888888776654444433322 14689999999999854
Q ss_pred ccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---CCccccccCCCcceeEEEe
Q 040463 100 RHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNLLLRPGCMDMHIHM 176 (192)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~~l~~~l~~~~rf~~~i~~ 176 (192)
.....++..++.... ..++|+++ ..+++.+.+ ||. .+.+
T Consensus 117 ---------------------------~~~~~l~~~l~~~~~--------~~~~i~~~~~~~~~~~~l~~--r~~-~i~~ 158 (226)
T 2chg_A 117 ---------------------------DAQAALRRTMEMYSK--------SCRFILSCNYVSRIIEPIQS--RCA-VFRF 158 (226)
T ss_dssp ---------------------------HHHHHHHHHHHHTTT--------TEEEEEEESCGGGSCHHHHT--TSE-EEEC
T ss_pred ---------------------------HHHHHHHHHHHhcCC--------CCeEEEEeCChhhcCHHHHH--hCc-eeec
Confidence 234556666655432 23455555 667888888 887 8999
Q ss_pred cCCCHHHHHHHHHhc
Q 040463 177 SYCTPCGLKMLASNY 191 (192)
Q Consensus 177 ~~p~~~~r~~i~~~~ 191 (192)
++|+.++..++++++
T Consensus 159 ~~~~~~~~~~~l~~~ 173 (226)
T 2chg_A 159 KPVPKEAMKKRLLEI 173 (226)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999988754
No 41
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.62 E-value=3e-15 Score=123.66 Aligned_cols=122 Identities=12% Similarity=0.109 Sum_probs=84.1
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEeecCCCCC----------------------hhHHHHH
Q 040463 29 AWKRGYLLYSPPRTGKSSLTAAMANYL----------NFDVCDLELTTLRD----------------------NTKLRNV 76 (192)
Q Consensus 29 ~~~~~ilL~GppGtGKt~l~~~ia~~~----------~~~~~~i~~~~~~~----------------------~~~l~~~ 76 (192)
..+.+++|+||||||||++++++++.+ ...++.++|..+.+ ...+...
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 345689999999999999999999998 35678899876543 1234555
Q ss_pred HHhc----CCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcce
Q 040463 77 LIAT----ENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQ 152 (192)
Q Consensus 77 ~~~~----~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ 152 (192)
|... ..++|++|||+|.+.. ..++..+++... .. ..+
T Consensus 123 f~~~~~~~~~~~ii~lDE~d~l~~-----------------------------q~~L~~l~~~~~-~~---------~s~ 163 (318)
T 3te6_A 123 ITNVPKAKKRKTLILIQNPENLLS-----------------------------EKILQYFEKWIS-SK---------NSK 163 (318)
T ss_dssp HHHSCGGGSCEEEEEEECCSSSCC-----------------------------THHHHHHHHHHH-CS---------SCC
T ss_pred HHHhhhccCCceEEEEecHHHhhc-----------------------------chHHHHHHhccc-cc---------CCc
Confidence 5543 3679999999999852 134444444321 11 223
Q ss_pred EEEE--e---C----CccccccCCCcce-eEEEecCCCHHHHHHHHHhc
Q 040463 153 LIIK--T---D----LTLNLLLRPGCMD-MHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 153 iiv~--t---~----~l~~~l~~~~rf~-~~i~~~~p~~~~r~~i~~~~ 191 (192)
++++ + + .+++++++ ||. ..|.|++++.++..+|+++.
T Consensus 164 ~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~R 210 (318)
T 3te6_A 164 LSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITR 210 (318)
T ss_dssp EEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHH
T ss_pred EEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHH
Confidence 4444 3 1 24556666 886 68999999999999998764
No 42
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.61 E-value=7.9e-15 Score=119.55 Aligned_cols=126 Identities=16% Similarity=0.203 Sum_probs=87.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCChhHHH-------------------HHHHhcCCCeEEEEeC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDNTKLR-------------------NVLIATENKSILAVED 90 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~~~l~-------------------~~~~~~~~~~Il~lDe 90 (192)
.++|+||||||||++|+++|+.+ +.+++.++++.+....... ..+.. ..++++||||
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~vl~lDE 127 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRR-RPYSVILFDA 127 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHH-CSSEEEEEET
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHHh-CCCeEEEEeC
Confidence 59999999999999999999998 4568899988765432222 22222 2458999999
Q ss_pred CCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCC--C-cceEEEEe--C-------
Q 040463 91 IDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGS--Q-YSQLIIKT--D------- 158 (192)
Q Consensus 91 id~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~--~-~~~iiv~t--~------- 158 (192)
+|.+.. ..++.|+..++....... .+. + ...++|+| .
T Consensus 128 i~~l~~------------------------------~~~~~Ll~~le~~~~~~~-~~~~~~~~~~iiI~ttn~~~~~i~~ 176 (311)
T 4fcw_A 128 IEKAHP------------------------------DVFNILLQMLDDGRLTDS-HGRTVDFRNTVIIMTSNLGSPLILE 176 (311)
T ss_dssp GGGSCH------------------------------HHHHHHHHHHHHSEEECT-TSCEEECTTEEEEEEESTTHHHHHT
T ss_pred hhhcCH------------------------------HHHHHHHHHHhcCEEEcC-CCCEEECCCcEEEEecccCHHHHHh
Confidence 999754 456777777754331110 000 0 12344444 3
Q ss_pred ---------------------CccccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 159 ---------------------LTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 159 ---------------------~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
.+++++++ ||+..+.+++|+.+++.+|+++++
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l 229 (311)
T 4fcw_A 177 GLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQM 229 (311)
T ss_dssp TTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHT
T ss_pred hhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHH
Confidence 35667777 999999999999999999998764
No 43
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.61 E-value=4e-14 Score=118.95 Aligned_cols=67 Identities=25% Similarity=0.405 Sum_probs=51.4
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCC--------hhHHHHHHHhcC------CCeEEEEeCCCccc
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRD--------NTKLRNVLIATE------NKSILAVEDIDCSI 95 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~--------~~~l~~~~~~~~------~~~Il~lDeid~l~ 95 (192)
.+.+++|+||||||||++|+++|+.++.+++.+++..+.. ...+...+.... .++|+||||+|.+.
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~ 150 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKIS 150 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC-
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHh
Confidence 3457999999999999999999999999999999887642 123444443322 57999999999987
Q ss_pred c
Q 040463 96 N 96 (192)
Q Consensus 96 ~ 96 (192)
.
T Consensus 151 ~ 151 (376)
T 1um8_A 151 R 151 (376)
T ss_dssp -
T ss_pred h
Confidence 5
No 44
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.61 E-value=5.2e-15 Score=129.57 Aligned_cols=120 Identities=18% Similarity=0.257 Sum_probs=84.9
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHHHHHH-------------h-------cCCCeEEEEe
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRNVLI-------------A-------TENKSILAVE 89 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~~~~~-------------~-------~~~~~Il~lD 89 (192)
...++||+||||||||++|+++|+.++.+++.++++.......+...+. . ..++.|||||
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliID 155 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMD 155 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEE
Confidence 3468999999999999999999999999999999998766443333222 1 1367999999
Q ss_pred CCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe-C----Cccccc
Q 040463 90 DIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-D----LTLNLL 164 (192)
Q Consensus 90 eid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-~----~l~~~l 164 (192)
|+|.+.. . ....+..++..++.. ..++|+++ . .++ .+
T Consensus 156 Eid~l~~--~-------------------------~~~~l~~L~~~l~~~----------~~~iIli~~~~~~~~l~-~l 197 (516)
T 1sxj_A 156 EVDGMSG--G-------------------------DRGGVGQLAQFCRKT----------STPLILICNERNLPKMR-PF 197 (516)
T ss_dssp SGGGCCT--T-------------------------STTHHHHHHHHHHHC----------SSCEEEEESCTTSSTTG-GG
T ss_pred CCCccch--h-------------------------hHHHHHHHHHHHHhc----------CCCEEEEEcCCCCccch-hh
Confidence 9999864 1 112244555555432 23477777 2 222 34
Q ss_pred cCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 165 LRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 165 ~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
. |+...+.|++|+.+++.+++..
T Consensus 198 ~---~r~~~i~f~~~~~~~~~~~L~~ 220 (516)
T 1sxj_A 198 D---RVCLDIQFRRPDANSIKSRLMT 220 (516)
T ss_dssp T---TTSEEEECCCCCHHHHHHHHHH
T ss_pred H---hceEEEEeCCCCHHHHHHHHHH
Confidence 3 4456899999999999988764
No 45
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.61 E-value=7.9e-15 Score=122.31 Aligned_cols=122 Identities=16% Similarity=0.139 Sum_probs=84.1
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhCC--cEEEeecCCCCC------------------------------------
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYLNF--DVCDLELTTLRD------------------------------------ 69 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~~~--~~~~i~~~~~~~------------------------------------ 69 (192)
...+.++||+||||||||++|+++|+.++. +++.+++..+..
T Consensus 67 ~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~ 146 (368)
T 3uk6_A 67 KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDV 146 (368)
T ss_dssp CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhh
Confidence 334468999999999999999999999975 666666543110
Q ss_pred -------------------hhHHHHHHHhc-------C----CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcc
Q 040463 70 -------------------NTKLRNVLIAT-------E----NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVT 119 (192)
Q Consensus 70 -------------------~~~l~~~~~~~-------~----~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (192)
...++..+..+ . .|+||||||+|.+..
T Consensus 147 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~----------------------- 203 (368)
T 3uk6_A 147 INSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDI----------------------- 203 (368)
T ss_dssp HTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBH-----------------------
T ss_pred hhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccCh-----------------------
Confidence 12233333221 1 268999999999854
Q ss_pred cCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---------------CCccccccCCCcceeEEEecCCCHHHH
Q 040463 120 NVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---------------DLTLNLLLRPGCMDMHIHMSYCTPCGL 184 (192)
Q Consensus 120 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---------------~~l~~~l~~~~rf~~~i~~~~p~~~~r 184 (192)
..++.|+..++.... ..+++.+ ..+++++++ ||.. +.|++|+.+++
T Consensus 204 -------~~~~~L~~~le~~~~---------~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~~~~~~~~e~ 264 (368)
T 3uk6_A 204 -------ESFSFLNRALESDMA---------PVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-VSTTPYSEKDT 264 (368)
T ss_dssp -------HHHHHHHHHTTCTTC---------CEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-EEECCCCHHHH
T ss_pred -------HHHHHHHHHhhCcCC---------CeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-EEecCCCHHHH
Confidence 455667666654422 1233332 257889999 9976 89999999999
Q ss_pred HHHHHhc
Q 040463 185 KMLASNY 191 (192)
Q Consensus 185 ~~i~~~~ 191 (192)
.++++.+
T Consensus 265 ~~il~~~ 271 (368)
T 3uk6_A 265 KQILRIR 271 (368)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999854
No 46
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.60 E-value=2.9e-15 Score=132.02 Aligned_cols=133 Identities=18% Similarity=0.176 Sum_probs=86.1
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChh---------------HHHHHHHhcC-CCeEEEEeCCCcc
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNT---------------KLRNVLIATE-NKSILAVEDIDCS 94 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~---------------~l~~~~~~~~-~~~Il~lDeid~l 94 (192)
...++|+||||||||++++++|..++.++..+++..+...+ .+.+.|..+. ...|+||||+|.+
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l 187 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKM 187 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSSSEEEEEEESSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhh
Confidence 34699999999999999999999999999999887754311 2233444442 3459999999999
Q ss_pred ccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCcccccc---ccC--CC-cceEEEEe----CCccccc
Q 040463 95 INLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVE---MRG--SQ-YSQLIIKT----DLTLNLL 164 (192)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~---~~~--~~-~~~iiv~t----~~l~~~l 164 (192)
.. .+.+ ...+.|+..++....... ..+ .+ ...++++| +.++++|
T Consensus 188 ~~--~~~~------------------------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL 241 (543)
T 3m6a_A 188 SS--DFRG------------------------DPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPL 241 (543)
T ss_dssp C-----------------------------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHH
T ss_pred hh--hhcc------------------------CHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHH
Confidence 75 2211 123445555553321100 000 00 12344555 7899999
Q ss_pred cCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 165 LRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 165 ~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
++ ||. .|.|+.|+.+++.+|++.+|
T Consensus 242 ~~--R~~-vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 242 RD--RME-IINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp HH--HEE-EEECCCCCHHHHHHHHHHTH
T ss_pred Hh--hcc-eeeeCCCCHHHHHHHHHHHH
Confidence 99 995 69999999999999998763
No 47
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.58 E-value=1e-14 Score=125.69 Aligned_cols=116 Identities=20% Similarity=0.248 Sum_probs=85.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHHHHHHhc------CCCeEEEEeCCCccccccCcccccc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRNVLIAT------ENKSILAVEDIDCSINLQGRHSQAK 105 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~~~~~~~------~~~~Il~lDeid~l~~~~~~~~~~~ 105 (192)
.++|||||||||||++++++++.++.++..+++... ....++..+..+ .+++||||||+|.+..
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~-~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~--------- 120 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVTS-GVKEIREAIERARQNRNAGRRTILFVDEVHRFNK--------- 120 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC-CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC-CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH---------
Confidence 479999999999999999999999999999998664 344455444433 3689999999999854
Q ss_pred CCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe-----CCccccccCCCcceeEEEecCCC
Q 040463 106 TLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-----DLTLNLLLRPGCMDMHIHMSYCT 180 (192)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-----~~l~~~l~~~~rf~~~i~~~~p~ 180 (192)
..+..|+..++.- ...+|.+| ..+++++++ |+. .+.+++|+
T Consensus 121 ---------------------~~q~~LL~~le~~----------~v~lI~att~n~~~~l~~aL~s--R~~-v~~l~~l~ 166 (447)
T 3pvs_A 121 ---------------------SQQDAFLPHIEDG----------TITFIGATTENPSFELNSALLS--RAR-VYLLKSLS 166 (447)
T ss_dssp -------------------------CCHHHHHTT----------SCEEEEEESSCGGGSSCHHHHT--TEE-EEECCCCC
T ss_pred ---------------------HHHHHHHHHHhcC----------ceEEEecCCCCcccccCHHHhC--cee-EEeeCCcC
Confidence 1223455555542 22355555 478899999 885 68899999
Q ss_pred HHHHHHHHHhc
Q 040463 181 PCGLKMLASNY 191 (192)
Q Consensus 181 ~~~r~~i~~~~ 191 (192)
.+++.++++++
T Consensus 167 ~edi~~il~~~ 177 (447)
T 3pvs_A 167 TEDIEQVLTQA 177 (447)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 48
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.56 E-value=1.1e-14 Score=121.48 Aligned_cols=129 Identities=13% Similarity=0.073 Sum_probs=86.1
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEeecCCCCCh----------------------hHHH-H--
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANYL---------NFDVCDLELTTLRDN----------------------TKLR-N-- 75 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~~---------~~~~~~i~~~~~~~~----------------------~~l~-~-- 75 (192)
.+.+++|+||||||||++++++++.+ +.+++.+++....+. ..+. .
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~ 122 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLV 122 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 34579999999999999999999988 778889998764331 1211 1
Q ss_pred -HHHhcCCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEE
Q 040463 76 -VLIATENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLI 154 (192)
Q Consensus 76 -~~~~~~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ii 154 (192)
.+....++++|+|||+|.+.. .+ .....+..++..++...... +..+|
T Consensus 123 ~~l~~~~~~~vlilDEi~~l~~--~~-----------------------~~~~~l~~l~~~~~~~~~~~------~~~~I 171 (387)
T 2v1u_A 123 KRLSRLRGIYIIVLDEIDFLPK--RP-----------------------GGQDLLYRITRINQELGDRV------WVSLV 171 (387)
T ss_dssp HHHTTSCSEEEEEEETTTHHHH--ST-----------------------THHHHHHHHHHGGGCC-----------CEEE
T ss_pred HHHhccCCeEEEEEccHhhhcc--cC-----------------------CCChHHHhHhhchhhcCCCc------eEEEE
Confidence 122223588999999999864 10 01234445555444332011 22345
Q ss_pred EEe------CCccccccCCCccee-EEEecCCCHHHHHHHHHhc
Q 040463 155 IKT------DLTLNLLLRPGCMDM-HIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 155 v~t------~~l~~~l~~~~rf~~-~i~~~~p~~~~r~~i~~~~ 191 (192)
++| +.+++.+.+ ||.. .+.|++|+.+++.++++..
T Consensus 172 ~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~ 213 (387)
T 2v1u_A 172 GITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETR 213 (387)
T ss_dssp EECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHH
T ss_pred EEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHH
Confidence 555 456778888 8875 8999999999999998764
No 49
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.56 E-value=1.9e-14 Score=118.79 Aligned_cols=128 Identities=15% Similarity=0.164 Sum_probs=85.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHHHHHH---------hcCC---CeEEEEeCCCccccccC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRNVLI---------ATEN---KSILAVEDIDCSINLQG 99 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~~~~~---------~~~~---~~Il~lDeid~l~~~~~ 99 (192)
.+++|+||||||||++++++|+.++.++..++++.....+.+..... .... .+|+||||+|.+..
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~--- 123 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPA--- 123 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTEEEEEECTTCSSEEEEETGGGSCH---
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCceEeccCcccccEEEEEccccCCH---
Confidence 57999999999999999999999999999888754333222211100 0011 37999999999754
Q ss_pred ccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccc--cccCCCcceEEEEe-C--------CccccccCCC
Q 040463 100 RHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAV--EMRGSQYSQLIIKT-D--------LTLNLLLRPG 168 (192)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~--~~~~~~~~~iiv~t-~--------~l~~~l~~~~ 168 (192)
...+.|+..++...-.. .....+...++++| . .+++++++
T Consensus 124 ---------------------------~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~-- 174 (331)
T 2r44_A 124 ---------------------------KVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVD-- 174 (331)
T ss_dssp ---------------------------HHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHT--
T ss_pred ---------------------------HHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHh--
Confidence 34555665554321000 00000122345555 1 28999999
Q ss_pred cceeEEEecCCCHHHHHHHHHhc
Q 040463 169 CMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 169 rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
||...+.+++|+.+++.+|++..
T Consensus 175 Rf~~~i~i~~p~~~~~~~il~~~ 197 (331)
T 2r44_A 175 RFMMKIHLTYLDKESELEVMRRV 197 (331)
T ss_dssp TSSEEEECCCCCHHHHHHHHHHH
T ss_pred heeEEEEcCCCCHHHHHHHHHhc
Confidence 99989999999999999998753
No 50
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.55 E-value=9.4e-14 Score=107.71 Aligned_cols=119 Identities=13% Similarity=0.230 Sum_probs=83.7
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCC------------------------cEEEeecCCCCChhHHHHHHHhcC------
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNF------------------------DVCDLELTTLRDNTKLRNVLIATE------ 81 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~------------------------~~~~i~~~~~~~~~~l~~~~~~~~------ 81 (192)
..++|+||||+|||++++++++.++. .++.+..........+...+....
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 125 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcC
Confidence 46999999999999999999998743 233444333223344555555542
Q ss_pred CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---C
Q 040463 82 NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---D 158 (192)
Q Consensus 82 ~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~ 158 (192)
++.+|+|||+|.+.. ...+.++..++.... ...+|++| .
T Consensus 126 ~~~vlviDe~~~l~~------------------------------~~~~~l~~~l~~~~~--------~~~~i~~t~~~~ 167 (250)
T 1njg_A 126 RFKVYLIDEVHMLSR------------------------------HSFNALLKTLEEPPE--------HVKFLLATTDPQ 167 (250)
T ss_dssp SSEEEEEETGGGSCH------------------------------HHHHHHHHHHHSCCT--------TEEEEEEESCGG
T ss_pred CceEEEEECcccccH------------------------------HHHHHHHHHHhcCCC--------ceEEEEEeCChH
Confidence 579999999999743 345667776665432 23455555 5
Q ss_pred CccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 159 LTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 159 ~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
.+++.+.+ |+ ..+++++++.++..++++++
T Consensus 168 ~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~ 197 (250)
T 1njg_A 168 KLPVTILS--RC-LQFHLKALDVEQIRHQLEHI 197 (250)
T ss_dssp GSCHHHHT--TS-EEEECCCCCHHHHHHHHHHH
T ss_pred hCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHH
Confidence 67788887 75 67999999999999998754
No 51
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.55 E-value=5.6e-15 Score=121.71 Aligned_cols=123 Identities=12% Similarity=0.151 Sum_probs=86.5
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCCh-------hHHHHHHHhcCCCeEEEEeCCCccccccCc
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDN-------TKLRNVLIATENKSILAVEDIDCSINLQGR 100 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~-------~~l~~~~~~~~~~~Il~lDeid~l~~~~~~ 100 (192)
..+++||||||||||++++++++.+ +.+++.+++..+... ............+.+|||||++.+..
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~---- 112 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSG---- 112 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTT----
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccC----
Confidence 3579999999999999999999998 889999988765310 00111122223589999999999854
Q ss_pred cccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe-------CCccccccCCCcce--
Q 040463 101 HSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-------DLTLNLLLRPGCMD-- 171 (192)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-------~~l~~~l~~~~rf~-- 171 (192)
.......++..++..... ..++|+++ ..+++++.+ ||.
T Consensus 113 ------------------------~~~~~~~l~~~l~~~~~~-------~~~iii~~~~~~~~l~~l~~~L~s--R~~~~ 159 (324)
T 1l8q_A 113 ------------------------KERTQIEFFHIFNTLYLL-------EKQIILASDRHPQKLDGVSDRLVS--RFEGG 159 (324)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHT-------TCEEEEEESSCGGGCTTSCHHHHH--HHHTS
T ss_pred ------------------------ChHHHHHHHHHHHHHHHC-------CCeEEEEecCChHHHHHhhhHhhh--cccCc
Confidence 112345555555554332 22455555 267889998 886
Q ss_pred eEEEecCCCHHHHHHHHHhc
Q 040463 172 MHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 172 ~~i~~~~p~~~~r~~i~~~~ 191 (192)
..+.+++ +.+++.+|++.+
T Consensus 160 ~~i~l~~-~~~e~~~il~~~ 178 (324)
T 1l8q_A 160 ILVEIEL-DNKTRFKIIKEK 178 (324)
T ss_dssp EEEECCC-CHHHHHHHHHHH
T ss_pred eEEEeCC-CHHHHHHHHHHH
Confidence 6799999 999999998764
No 52
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.54 E-value=1.1e-14 Score=113.84 Aligned_cols=124 Identities=14% Similarity=0.156 Sum_probs=85.4
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhC---CcEEEeecCCCCChhHHHHHHHhcCCCeEEEEeCCCccccccCccccccC
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANYLN---FDVCDLELTTLRDNTKLRNVLIATENKSILAVEDIDCSINLQGRHSQAKT 106 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~~~---~~~~~i~~~~~~~~~~l~~~~~~~~~~~Il~lDeid~l~~~~~~~~~~~~ 106 (192)
...+++|+||||||||++++++++.+. ..+..+++..+... +...+....++.+|+|||++.+.. .
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~vliiDe~~~~~~--~------- 119 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASI--STALLEGLEQFDLICIDDVDAVAG--H------- 119 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGS--CGGGGTTGGGSSEEEEETGGGGTT--C-------
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH--HHHHHHhccCCCEEEEeccccccC--C-------
Confidence 346899999999999999999999874 67788887665421 122233335689999999999754 1
Q ss_pred CCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe----C---CccccccCCCcce--eEEEec
Q 040463 107 LNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT----D---LTLNLLLRPGCMD--MHIHMS 177 (192)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t----~---~l~~~l~~~~rf~--~~i~~~ 177 (192)
......++..++...... ..++|+++ . .+++.+.+ ||. ..+.++
T Consensus 120 -------------------~~~~~~l~~~l~~~~~~~------~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~ 172 (242)
T 3bos_A 120 -------------------PLWEEAIFDLYNRVAEQK------RGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQ 172 (242)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHC------SCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECC
T ss_pred -------------------HHHHHHHHHHHHHHHHcC------CCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeC
Confidence 112345555555544321 11255555 1 34577777 775 889999
Q ss_pred CCCHHHHHHHHHhc
Q 040463 178 YCTPCGLKMLASNY 191 (192)
Q Consensus 178 ~p~~~~r~~i~~~~ 191 (192)
+|+.+++.++++.+
T Consensus 173 ~~~~~~~~~~l~~~ 186 (242)
T 3bos_A 173 PMMDDEKLAALQRR 186 (242)
T ss_dssp CCCGGGHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999998764
No 53
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.53 E-value=5.6e-14 Score=128.07 Aligned_cols=125 Identities=14% Similarity=0.216 Sum_probs=88.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCCh-----hHHHHHHHhcCCCeEEEEeCCCccccccCccccc
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDN-----TKLRNVLIATENKSILAVEDIDCSINLQGRHSQA 104 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~-----~~l~~~~~~~~~~~Il~lDeid~l~~~~~~~~~~ 104 (192)
++||+||||||||++|+++|+.+ +.+++.++++.+... ..+...+.. ..++||||||+|.+..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~l~~~~~~-~~~~vl~lDEi~~~~~-------- 593 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLTEKVRR-KPYSVVLLDAIEKAHP-------- 593 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---CHHHHHH-CSSSEEEEECGGGSCH--------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccchhhHHHHh-CCCeEEEEeCccccCH--------
Confidence 59999999999999999999997 678999999887642 233333333 3578999999998754
Q ss_pred cCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccC---CCcceEEEEe-CC---------------cccccc
Q 040463 105 KTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRG---SQYSQLIIKT-DL---------------TLNLLL 165 (192)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~---~~~~~iiv~t-~~---------------l~~~l~ 165 (192)
..++.|+..++.-.-.. ..| .....++|+| .. +.|+++
T Consensus 594 ----------------------~~~~~Ll~~le~g~~~~-~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~ 650 (758)
T 3pxi_A 594 ----------------------DVFNILLQVLEDGRLTD-SKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFI 650 (758)
T ss_dssp ----------------------HHHHHHHHHHHHSBCC------CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHH
T ss_pred ----------------------HHHHHHHHHhccCeEEc-CCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHH
Confidence 56777888776532110 000 0022345555 21 678888
Q ss_pred CCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 166 RPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 166 ~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
+ ||+..|.|++|+.+++.+|++.+
T Consensus 651 ~--Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 651 N--RIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp T--TSSEEEECC--CHHHHHHHHHHH
T ss_pred h--hCCeEEecCCCCHHHHHHHHHHH
Confidence 8 99999999999999999998765
No 54
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.52 E-value=1.7e-13 Score=124.71 Aligned_cols=125 Identities=14% Similarity=0.262 Sum_probs=91.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCCh-------------------hHHHHHHHhcCCCeEEEEeCCCc
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDN-------------------TKLRNVLIATENKSILAVEDIDC 93 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~-------------------~~l~~~~~~~~~~~Il~lDeid~ 93 (192)
++||+||||||||++|+++|+.++.+++.++++.+... ..+...+.. +.++||||||+|.
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~-~~~~vl~lDEi~~ 568 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIK-HPHAVLLLDEIEK 568 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHH-CSSEEEEEETGGG
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHh-CCCcEEEEeCccc
Confidence 59999999999999999999999999999999877431 123344433 3579999999998
Q ss_pred cccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccC--CC-cceEEEEe--C----------
Q 040463 94 SINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRG--SQ-YSQLIIKT--D---------- 158 (192)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~--~~-~~~iiv~t--~---------- 158 (192)
+.+ .+++.|+..++.-.-.+ ..| .+ ...++|+| .
T Consensus 569 ~~~------------------------------~~~~~Ll~~le~~~~~~-~~g~~~~~~~~~iI~tsN~~~~~~~~~~~ 617 (758)
T 1r6b_X 569 AHP------------------------------DVFNILLQVMDNGTLTD-NNGRKADFRNVVLVMTTNAGVRETERKSI 617 (758)
T ss_dssp SCH------------------------------HHHHHHHHHHHHSEEEE-TTTEEEECTTEEEEEEECSSCC-------
T ss_pred cCH------------------------------HHHHHHHHHhcCcEEEc-CCCCEEecCCeEEEEecCcchhhhhhccc
Confidence 754 57788888887432110 000 00 12345555 1
Q ss_pred -----------------CccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 159 -----------------LTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 159 -----------------~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
.+.+++++ ||+..|.|++|+.+++.+|++.+
T Consensus 618 g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~ 665 (758)
T 1r6b_X 618 GLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKF 665 (758)
T ss_dssp ----------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHH
Confidence 46778888 99999999999999999999865
No 55
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.51 E-value=2.9e-14 Score=122.68 Aligned_cols=122 Identities=15% Similarity=0.190 Sum_probs=88.0
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEeecCCCCChhHHH---------HHHHhcC-CCeEEEEeCCCccc
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL-----NFDVCDLELTTLRDNTKLR---------NVLIATE-NKSILAVEDIDCSI 95 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~-----~~~~~~i~~~~~~~~~~l~---------~~~~~~~-~~~Il~lDeid~l~ 95 (192)
..+++||||||||||++++++++.+ +.+++.+++..+.. .+. ....... .+.||||||++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~ 207 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN--DLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLI 207 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHH--HHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH--HHHHHHHcccHHHHHHHhcCCCCEEEEeCccccc
Confidence 4579999999999999999999988 78888888876531 121 2222234 68999999999986
Q ss_pred cccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe-------CCccccccCCC
Q 040463 96 NLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT-------DLTLNLLLRPG 168 (192)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t-------~~l~~~l~~~~ 168 (192)
+ . ......++..++.+... ...+|++| ..+++.+++
T Consensus 208 ~--~--------------------------~~~q~~l~~~l~~l~~~-------~~~iIitt~~~~~~l~~l~~~L~s-- 250 (440)
T 2z4s_A 208 G--K--------------------------TGVQTELFHTFNELHDS-------GKQIVICSDREPQKLSEFQDRLVS-- 250 (440)
T ss_dssp S--C--------------------------HHHHHHHHHHHHHHHTT-------TCEEEEEESSCGGGCSSCCHHHHH--
T ss_pred C--C--------------------------hHHHHHHHHHHHHHHHC-------CCeEEEEECCCHHHHHHHHHHHHh--
Confidence 4 1 12345566666555432 22455555 237788888
Q ss_pred cce--eEEEecCCCHHHHHHHHHhc
Q 040463 169 CMD--MHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 169 rf~--~~i~~~~p~~~~r~~i~~~~ 191 (192)
||. ..+.+++|+.++|.+|++..
T Consensus 251 R~~~g~~i~l~~p~~e~r~~iL~~~ 275 (440)
T 2z4s_A 251 RFQMGLVAKLEPPDEETRKSIARKM 275 (440)
T ss_dssp HHHSSBCCBCCCCCHHHHHHHHHHH
T ss_pred hccCCeEEEeCCCCHHHHHHHHHHH
Confidence 885 78999999999999998764
No 56
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.51 E-value=3.9e-14 Score=103.95 Aligned_cols=64 Identities=13% Similarity=0.173 Sum_probs=52.5
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCChhHHHHHHHhcCCCeEEEEeCCCcccc
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDNTKLRNVLIATENKSILAVEDIDCSIN 96 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~~~l~~~~~~~~~~~Il~lDeid~l~~ 96 (192)
...++|+||||||||++|+++++.. +.+++ ++|..+.........+..+ .+++|||||+|.+..
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~a-~~g~l~ldei~~l~~ 90 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLNDFIALA-QGGTLVLSHPEHLTR 90 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHHHHHHHH-TTSCEEEECGGGSCH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhhcHHHHc-CCcEEEEcChHHCCH
Confidence 3479999999999999999999987 67888 9998877655555666555 568999999999854
No 57
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.50 E-value=1.1e-13 Score=115.78 Aligned_cols=121 Identities=17% Similarity=0.194 Sum_probs=82.2
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh-----------CCcEEEeecCCCC-Ch-----------------------hH-HH
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL-----------NFDVCDLELTTLR-DN-----------------------TK-LR 74 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~-----------~~~~~~i~~~~~~-~~-----------------------~~-l~ 74 (192)
+.+++|+||||||||++++++++.+ +.+++.+++.... +. .. +.
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 124 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYID 124 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHH
Confidence 4579999999999999999999987 8889999876543 21 11 11
Q ss_pred HHHHhcC-CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcch-HHHHHHhhcCccccccccCCCcce
Q 040463 75 NVLIATE-NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVT-LSGLLNFIDGVCRAVEMRGSQYSQ 152 (192)
Q Consensus 75 ~~~~~~~-~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ll~~l~~~~~~~~~~~~~~~~ 152 (192)
..+.... .+.||+|||+|.+.. .+ .... +..++... . +..
T Consensus 125 ~l~~~l~~~~~vlilDEi~~l~~--~~------------------------~~~~~l~~l~~~~----~--------~~~ 166 (384)
T 2qby_B 125 KIKNGTRNIRAIIYLDEVDTLVK--RR------------------------GGDIVLYQLLRSD----A--------NIS 166 (384)
T ss_dssp HHHHHHSSSCEEEEEETTHHHHH--ST------------------------TSHHHHHHHHTSS----S--------CEE
T ss_pred HHHHHhccCCCEEEEECHHHhcc--CC------------------------CCceeHHHHhcCC----c--------ceE
Confidence 2222222 234999999999864 10 0122 33333332 1 224
Q ss_pred EEEEe------CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 153 LIIKT------DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 153 iiv~t------~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
+|++| +.+++.+.+ ||...+.|++|+.++..+|++.+
T Consensus 167 iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~ 209 (384)
T 2qby_B 167 VIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKY 209 (384)
T ss_dssp EEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHH
T ss_pred EEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHH
Confidence 55555 356788888 88779999999999999999764
No 58
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.49 E-value=6.9e-13 Score=120.76 Aligned_cols=130 Identities=18% Similarity=0.203 Sum_probs=87.1
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEeecCCCCC--------hhHHHHHHHhcC--CCeEEE
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYL----------NFDVCDLELTTLRD--------NTKLRNVLIATE--NKSILA 87 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~----------~~~~~~i~~~~~~~--------~~~l~~~~~~~~--~~~Il~ 87 (192)
...+.+++|+||||||||++++++++.+ +..++.+++..+.. ...+...+.... .++|||
T Consensus 204 ~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~ 283 (758)
T 1r6b_X 204 RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILF 283 (758)
T ss_dssp SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEE
T ss_pred ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEE
Confidence 3445689999999999999999999987 56677776655432 235566666554 479999
Q ss_pred EeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe--------CC
Q 040463 88 VEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT--------DL 159 (192)
Q Consensus 88 lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t--------~~ 159 (192)
|||+|.+.+ ...... ......+.+..+.... ..++|.+| ..
T Consensus 284 IDEi~~l~~--~~~~~~-----------------------~~~~~~~~L~~~l~~~------~~~~I~at~~~~~~~~~~ 332 (758)
T 1r6b_X 284 IDEIHTIIG--AGAASG-----------------------GQVDAANLIKPLLSSG------KIRVIGSTTYQEFSNIFE 332 (758)
T ss_dssp ETTTTTTTT--SCCSSS-----------------------CHHHHHHHHSSCSSSC------CCEEEEEECHHHHHCCCC
T ss_pred EechHHHhh--cCCCCc-----------------------chHHHHHHHHHHHhCC------CeEEEEEeCchHHhhhhh
Confidence 999999975 211110 0122333344443321 33455555 24
Q ss_pred ccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 160 TLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 160 l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
+|+++.+ ||. .+.++.|+.+++.+|++.+
T Consensus 333 ~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l 361 (758)
T 1r6b_X 333 KDRALAR--RFQ-KIDITEPSIEETVQIINGL 361 (758)
T ss_dssp CTTSSGG--GEE-EEECCCCCHHHHHHHHHHH
T ss_pred cCHHHHh--Cce-EEEcCCCCHHHHHHHHHHH
Confidence 6788999 997 6999999999999998753
No 59
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.48 E-value=5.6e-13 Score=111.29 Aligned_cols=123 Identities=15% Similarity=0.003 Sum_probs=85.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh----CCcEEEeecCCCCChh--------------------------HHHHHHHhcCC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL----NFDVCDLELTTLRDNT--------------------------KLRNVLIATEN 82 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~----~~~~~~i~~~~~~~~~--------------------------~l~~~~~~~~~ 82 (192)
.++|+||||||||++++++++.+ +..++.+++....... .+...+.....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 125 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDL 125 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCC
Confidence 79999999999999999999998 5678888876654321 11222223346
Q ss_pred CeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe-----
Q 040463 83 KSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT----- 157 (192)
Q Consensus 83 ~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t----- 157 (192)
|.||+|||+|.+.. ..+..|+..++...... ..+..+|+++
T Consensus 126 ~~vlilDE~~~l~~------------------------------~~~~~L~~~~~~~~~~~----~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 126 YMFLVLDDAFNLAP------------------------------DILSTFIRLGQEADKLG----AFRIALVIVGHNDAV 171 (389)
T ss_dssp CEEEEEETGGGSCH------------------------------HHHHHHHHHTTCHHHHS----SCCEEEEEEESSTHH
T ss_pred eEEEEEECccccch------------------------------HHHHHHHHHHHhCCCCC----cCCEEEEEEECCchH
Confidence 88999999999732 45666777766553200 0022455555
Q ss_pred -CCccccccCCCccee-EEEecCCCHHHHHHHHHhc
Q 040463 158 -DLTLNLLLRPGCMDM-HIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 158 -~~l~~~l~~~~rf~~-~i~~~~p~~~~r~~i~~~~ 191 (192)
+.+++.+.+ ||.. .+.|++++.++..++++..
T Consensus 172 ~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~ 205 (389)
T 1fnn_A 172 LNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDR 205 (389)
T ss_dssp HHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHH
T ss_pred HHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHH
Confidence 346666666 7765 7999999999999988754
No 60
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.48 E-value=1.8e-13 Score=102.57 Aligned_cols=117 Identities=16% Similarity=0.199 Sum_probs=75.3
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEeecCCCCC--------hhHHHHHH---HhcCCCeEEEE
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANYL----------NFDVCDLELTTLRD--------NTKLRNVL---IATENKSILAV 88 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~~----------~~~~~~i~~~~~~~--------~~~l~~~~---~~~~~~~Il~l 88 (192)
.+.+++|+||||||||++++++++.+ +.+++.+++..+.. ...+...+ .....+.+|+|
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i 121 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFI 121 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEE
Confidence 34579999999999999999999987 67777777655421 11233333 33346899999
Q ss_pred eCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---C-----Cc
Q 040463 89 EDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---D-----LT 160 (192)
Q Consensus 89 Deid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~-----~l 160 (192)
||+|.+.. .+... .......+.+...++.. ...+|.++ + .+
T Consensus 122 De~~~l~~--~~~~~-------------------~~~~~~~~~l~~~~~~~----------~~~ii~~~~~~~~~~~~~~ 170 (187)
T 2p65_A 122 DEIHTVVG--AGAVA-------------------EGALDAGNILKPMLARG----------ELRCIGATTVSEYRQFIEK 170 (187)
T ss_dssp TTGGGGSS--SSSSC-------------------TTSCCTHHHHHHHHHTT----------CSCEEEEECHHHHHHHTTT
T ss_pred eCHHHhcc--ccccc-------------------ccchHHHHHHHHHHhcC----------CeeEEEecCHHHHHHHHhc
Confidence 99999864 21100 01123344444444321 22355544 2 57
Q ss_pred cccccCCCcceeEEEecCCC
Q 040463 161 LNLLLRPGCMDMHIHMSYCT 180 (192)
Q Consensus 161 ~~~l~~~~rf~~~i~~~~p~ 180 (192)
++++.+ ||.. +.+++|+
T Consensus 171 ~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 171 DKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp CHHHHH--HEEE-EECCSCC
T ss_pred cHHHHH--hcCc-ccCCCCC
Confidence 899999 9985 9999986
No 61
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.47 E-value=1.1e-13 Score=112.67 Aligned_cols=118 Identities=14% Similarity=0.167 Sum_probs=83.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEeecCCCCChhHHHH---HHH-hc----CCCeEEEEeCCCccccccC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL-----NFDVCDLELTTLRDNTKLRN---VLI-AT----ENKSILAVEDIDCSINLQG 99 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~-----~~~~~~i~~~~~~~~~~l~~---~~~-~~----~~~~Il~lDeid~l~~~~~ 99 (192)
.++|+||||||||++++++++.+ +.+++.++++...+...+.. .+. .. .++.|++|||+|.+..
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--- 116 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA--- 116 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH---
T ss_pred eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH---
Confidence 49999999999999999999986 34578888876543222222 222 11 3579999999999753
Q ss_pred ccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---CCccccccCCCcceeEEEe
Q 040463 100 RHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNLLLRPGCMDMHIHM 176 (192)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~~l~~~l~~~~rf~~~i~~ 176 (192)
...+.|+..++.... ..++|+++ ..+.+.+.+ |+. .+.|
T Consensus 117 ---------------------------~~~~~L~~~le~~~~--------~~~~i~~~~~~~~l~~~l~s--r~~-~i~~ 158 (319)
T 2chq_A 117 ---------------------------DAQAALRRTMEMYSK--------SCRFILSCNYVSRIIEPIQS--RCA-VFRF 158 (319)
T ss_dssp ---------------------------HHHHTTGGGTSSSSS--------SEEEEEEESCGGGSCHHHHT--TCE-EEEC
T ss_pred ---------------------------HHHHHHHHHHHhcCC--------CCeEEEEeCChhhcchHHHh--hCe-EEEe
Confidence 234555555555432 23455555 677888888 885 7999
Q ss_pred cCCCHHHHHHHHHhc
Q 040463 177 SYCTPCGLKMLASNY 191 (192)
Q Consensus 177 ~~p~~~~r~~i~~~~ 191 (192)
++|+.+++.+++..+
T Consensus 159 ~~~~~~~~~~~l~~~ 173 (319)
T 2chq_A 159 KPVPKEAMKKRLLEI 173 (319)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH
Confidence 999999999888653
No 62
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.47 E-value=3.4e-13 Score=109.96 Aligned_cols=118 Identities=13% Similarity=0.108 Sum_probs=85.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEeecCCCCChhHHHHHHHh---------cCCCeEEEEeCCCcccccc
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL-----NFDVCDLELTTLRDNTKLRNVLIA---------TENKSILAVEDIDCSINLQ 98 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~-----~~~~~~i~~~~~~~~~~l~~~~~~---------~~~~~Il~lDeid~l~~~~ 98 (192)
.++|+||||+|||++++++++.+ +..++.+++....+...+++.+.. ..++.|++|||+|.+..
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-- 121 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA-- 121 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH--
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH--
Confidence 39999999999999999999986 456788887765454555444332 12478999999999754
Q ss_pred CccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---CCccccccCCCcceeEEE
Q 040463 99 GRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNLLLRPGCMDMHIH 175 (192)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~~l~~~l~~~~rf~~~i~ 175 (192)
...+.|+..++.... ...+|++| ..+.+.+.+ |+. .+.
T Consensus 122 ----------------------------~~~~~L~~~le~~~~--------~~~~il~~~~~~~l~~~l~s--r~~-~i~ 162 (323)
T 1sxj_B 122 ----------------------------GAQQALRRTMELYSN--------STRFAFACNQSNKIIEPLQS--QCA-ILR 162 (323)
T ss_dssp ----------------------------HHHHTTHHHHHHTTT--------TEEEEEEESCGGGSCHHHHT--TSE-EEE
T ss_pred ----------------------------HHHHHHHHHHhccCC--------CceEEEEeCChhhchhHHHh--hce-EEe
Confidence 234455555554332 23466666 677888888 775 799
Q ss_pred ecCCCHHHHHHHHHhc
Q 040463 176 MSYCTPCGLKMLASNY 191 (192)
Q Consensus 176 ~~~p~~~~r~~i~~~~ 191 (192)
|++|+.++..++++.+
T Consensus 163 ~~~~~~~~~~~~l~~~ 178 (323)
T 1sxj_B 163 YSKLSDEDVLKRLLQI 178 (323)
T ss_dssp CCCCCHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHH
Confidence 9999999999988753
No 63
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=3.4e-13 Score=110.09 Aligned_cols=118 Identities=13% Similarity=0.139 Sum_probs=82.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEeecCCCCChhHHH----HHHHhc----CCCeEEEEeCCCccccccC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLN-----FDVCDLELTTLRDNTKLR----NVLIAT----ENKSILAVEDIDCSINLQG 99 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~-----~~~~~i~~~~~~~~~~l~----~~~~~~----~~~~Il~lDeid~l~~~~~ 99 (192)
.++|+||||||||++++++++.+. ..++.++++.......+. ...... .++.++++||+|.+..
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--- 124 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ--- 124 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH---
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH---
Confidence 599999999999999999999863 347777776543222222 222111 3578999999999754
Q ss_pred ccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---CCccccccCCCcceeEEEe
Q 040463 100 RHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNLLLRPGCMDMHIHM 176 (192)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~~l~~~l~~~~rf~~~i~~ 176 (192)
...+.|+..++.... ..++|+++ ..+.+.+.+ |+. .+.|
T Consensus 125 ---------------------------~~~~~L~~~le~~~~--------~~~~i~~~~~~~~l~~~l~s--r~~-~~~~ 166 (327)
T 1iqp_A 125 ---------------------------DAQQALRRTMEMFSS--------NVRFILSCNYSSKIIEPIQS--RCA-IFRF 166 (327)
T ss_dssp ---------------------------HHHHHHHHHHHHTTT--------TEEEEEEESCGGGSCHHHHH--TEE-EEEC
T ss_pred ---------------------------HHHHHHHHHHHhcCC--------CCeEEEEeCCccccCHHHHh--hCc-EEEe
Confidence 345667766665432 23455555 567788888 886 7999
Q ss_pred cCCCHHHHHHHHHhc
Q 040463 177 SYCTPCGLKMLASNY 191 (192)
Q Consensus 177 ~~p~~~~r~~i~~~~ 191 (192)
++++.++..++++.+
T Consensus 167 ~~l~~~~~~~~l~~~ 181 (327)
T 1iqp_A 167 RPLRDEDIAKRLRYI 181 (327)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH
Confidence 999999999888653
No 64
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.46 E-value=4.6e-13 Score=123.53 Aligned_cols=127 Identities=15% Similarity=0.153 Sum_probs=78.2
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEeecCCCCC--------hhHHHHHHHhc---CCCeEEEE
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANYL----------NFDVCDLELTTLRD--------NTKLRNVLIAT---ENKSILAV 88 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~~----------~~~~~~i~~~~~~~--------~~~l~~~~~~~---~~~~Il~l 88 (192)
.+.+++|+||||||||++++++|+.+ +.+++.++++.+.. ...+...+..+ ..++||||
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~I 269 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFI 269 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEE
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 34589999999999999999999987 78899998877642 12345555544 36899999
Q ss_pred eCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---C----Ccc
Q 040463 89 EDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---D----LTL 161 (192)
Q Consensus 89 Deid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~----~l~ 161 (192)
||+|.+.+ ..... ......+.+...++.. ...+|.+| + .++
T Consensus 270 DEi~~l~~--~~~~~--------------------g~~~~~~~L~~~l~~~----------~i~~I~at~~~~~~~~~~d 317 (854)
T 1qvr_A 270 DELHTVVG--AGKAE--------------------GAVDAGNMLKPALARG----------ELRLIGATTLDEYREIEKD 317 (854)
T ss_dssp CCC-----------------------------------------HHHHHTT----------CCCEEEEECHHHHHHHTTC
T ss_pred ecHHHHhc--cCCcc--------------------chHHHHHHHHHHHhCC----------CeEEEEecCchHHhhhccC
Confidence 99999975 21111 0112223333333221 22355555 1 368
Q ss_pred ccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 162 NLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 162 ~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
+++.+ ||.. |.+++|+.+++.+|++.+
T Consensus 318 ~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 318 PALER--RFQP-VYVDEPTVEETISILRGL 344 (854)
T ss_dssp TTTCS--CCCC-EEECCCCHHHHHHHHHHH
T ss_pred HHHHh--CCce-EEeCCCCHHHHHHHHHhh
Confidence 99999 9986 999999999999999743
No 65
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.46 E-value=3.3e-13 Score=107.99 Aligned_cols=128 Identities=14% Similarity=0.140 Sum_probs=80.0
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhC---CcEEEeecCCCCChhHHHHHHHh------------------cCCCeEEEEe
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLN---FDVCDLELTTLRDNTKLRNVLIA------------------TENKSILAVE 89 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~---~~~~~i~~~~~~~~~~l~~~~~~------------------~~~~~Il~lD 89 (192)
+.+++|+||||||||++|+++++.+. .+++.++|+.+.. ..+...+.. ...+++||||
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lD 107 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-NLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLD 107 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCH-HHHHHHHHCCC---------CCCCHHHHTTTSEEEEE
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCCh-hHHHHHhcCCcccccccccccccchhhhcCCcEEEEe
Confidence 35799999999999999999999875 6799999988743 222222211 1246899999
Q ss_pred CCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCcc--ccccc-cCCCcceEEEEe-C-------
Q 040463 90 DIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVC--RAVEM-RGSQYSQLIIKT-D------- 158 (192)
Q Consensus 90 eid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--~~~~~-~~~~~~~iiv~t-~------- 158 (192)
|++.+.. ..+..|+..++... ..... ......++|++| .
T Consensus 108 Ei~~l~~------------------------------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~ 157 (265)
T 2bjv_A 108 ELATAPM------------------------------MVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVN 157 (265)
T ss_dssp SGGGSCH------------------------------HHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHH
T ss_pred chHhcCH------------------------------HHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHH
Confidence 9999854 34556666665321 00000 000023455555 2
Q ss_pred --CccccccCCCcce-eEEEecCCCH--HHHHHHHHhc
Q 040463 159 --LTLNLLLRPGCMD-MHIHMSYCTP--CGLKMLASNY 191 (192)
Q Consensus 159 --~l~~~l~~~~rf~-~~i~~~~p~~--~~r~~i~~~~ 191 (192)
.+.+.+.+ ||. ..|.+|+++. ++...+++++
T Consensus 158 ~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~ 193 (265)
T 2bjv_A 158 EGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYF 193 (265)
T ss_dssp HTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHH
T ss_pred cCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHH
Confidence 35567777 885 4677777765 5555555543
No 66
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.45 E-value=2.7e-13 Score=112.11 Aligned_cols=117 Identities=15% Similarity=0.172 Sum_probs=85.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC------CcEEEeecCCCCChhHHHHHH---Hh---------------cCCCeEEEE
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLN------FDVCDLELTTLRDNTKLRNVL---IA---------------TENKSILAV 88 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~------~~~~~i~~~~~~~~~~l~~~~---~~---------------~~~~~Il~l 88 (192)
+++|+||||||||++++++++.++ ..+..++++.......+.+.+ .. ...+.|+++
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlii 139 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIIL 139 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEE
Confidence 499999999999999999999864 467888887754433332222 11 124579999
Q ss_pred eCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---CCcccccc
Q 040463 89 EDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNLLL 165 (192)
Q Consensus 89 Deid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~~l~~~l~ 165 (192)
||+|.+.. ...+.|+..++.... ..++|+++ ..+.+.++
T Consensus 140 DE~~~l~~------------------------------~~~~~Ll~~le~~~~--------~~~~il~~~~~~~l~~~l~ 181 (353)
T 1sxj_D 140 DEADSMTA------------------------------DAQSALRRTMETYSG--------VTRFCLICNYVTRIIDPLA 181 (353)
T ss_dssp TTGGGSCH------------------------------HHHHHHHHHHHHTTT--------TEEEEEEESCGGGSCHHHH
T ss_pred ECCCccCH------------------------------HHHHHHHHHHHhcCC--------CceEEEEeCchhhCcchhh
Confidence 99999854 344667766665543 23566666 67888888
Q ss_pred CCCcceeEEEecCCCHHHHHHHHHh
Q 040463 166 RPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 166 ~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
+ |+. .+.+++|+.++..++++.
T Consensus 182 s--R~~-~i~~~~~~~~~~~~~l~~ 203 (353)
T 1sxj_D 182 S--QCS-KFRFKALDASNAIDRLRF 203 (353)
T ss_dssp H--HSE-EEECCCCCHHHHHHHHHH
T ss_pred c--cCc-eEEeCCCCHHHHHHHHHH
Confidence 8 886 799999999999988865
No 67
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.44 E-value=2.8e-13 Score=112.67 Aligned_cols=126 Identities=14% Similarity=0.155 Sum_probs=85.9
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh------CCcEEEeecCCCCC----------------------hhH----HHHHHH
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL------NFDVCDLELTTLRD----------------------NTK----LRNVLI 78 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~------~~~~~~i~~~~~~~----------------------~~~----l~~~~~ 78 (192)
+..++|+||+|||||++++++++.+ +..++.+++..... ... +...+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 124 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVR 124 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh
Confidence 4579999999999999999999988 78888888653211 112 222333
Q ss_pred hcCCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe-
Q 040463 79 ATENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT- 157 (192)
Q Consensus 79 ~~~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t- 157 (192)
....|.||+|||++.+.. . .....+..++..++..... +..+|++|
T Consensus 125 ~~~~~~vlilDE~~~l~~--~------------------------~~~~~l~~l~~~~~~~~~~-------~~~~I~~~~ 171 (386)
T 2qby_A 125 DYGSQVVIVLDEIDAFVK--K------------------------YNDDILYKLSRINSEVNKS-------KISFIGITN 171 (386)
T ss_dssp TCCSCEEEEEETHHHHHH--S------------------------SCSTHHHHHHHHHHSCCC---------EEEEEEES
T ss_pred ccCCeEEEEEcChhhhhc--c------------------------CcCHHHHHHhhchhhcCCC-------eEEEEEEEC
Confidence 334589999999999864 1 0124566677666554211 22345555
Q ss_pred -----CCccccccCCCcce-eEEEecCCCHHHHHHHHHhc
Q 040463 158 -----DLTLNLLLRPGCMD-MHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 158 -----~~l~~~l~~~~rf~-~~i~~~~p~~~~r~~i~~~~ 191 (192)
..+++.+.+ ||. ..+.+++++.++..++++..
T Consensus 172 ~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~ 209 (386)
T 2qby_A 172 DVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKR 209 (386)
T ss_dssp CGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHH
T ss_pred CCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHH
Confidence 245667776 664 58999999999999998753
No 68
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.44 E-value=1.8e-12 Score=107.88 Aligned_cols=119 Identities=13% Similarity=0.230 Sum_probs=83.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCC------------------------cEEEeecCCCCChhHHHHHHHhcC------
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNF------------------------DVCDLELTTLRDNTKLRNVLIATE------ 81 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~------------------------~~~~i~~~~~~~~~~l~~~~~~~~------ 81 (192)
..++|+||+|||||++++++++.++. .++.++.........++..+....
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 118 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccC
Confidence 36899999999999999999998754 234444433222334555554432
Q ss_pred CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---C
Q 040463 82 NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---D 158 (192)
Q Consensus 82 ~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~ 158 (192)
++.|++|||+|.+.. ...+.|+..++.... ...+|++| .
T Consensus 119 ~~~vliiDe~~~l~~------------------------------~~~~~Ll~~le~~~~--------~~~~Il~~~~~~ 160 (373)
T 1jr3_A 119 RFKVYLIDEVHMLSR------------------------------HSFNALLKTLEEPPE--------HVKFLLATTDPQ 160 (373)
T ss_dssp SSEEEEEECGGGSCH------------------------------HHHHHHHHHHHSCCS--------SEEEEEEESCGG
T ss_pred CeEEEEEECcchhcH------------------------------HHHHHHHHHHhcCCC--------ceEEEEEeCChH
Confidence 468999999999743 345677777765432 22455555 5
Q ss_pred CccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 159 LTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 159 ~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
.+.+.+.+ |+ ..+.+++|+.++..++++.+
T Consensus 161 ~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~ 190 (373)
T 1jr3_A 161 KLPVTILS--RC-LQFHLKALDVEQIRHQLEHI 190 (373)
T ss_dssp GSCHHHHT--TS-EEEECCCCCHHHHHHHHHHH
T ss_pred hCcHHHHh--he-eEeeCCCCCHHHHHHHHHHH
Confidence 67788887 77 67999999999999988754
No 69
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.43 E-value=2.3e-12 Score=106.81 Aligned_cols=128 Identities=19% Similarity=0.189 Sum_probs=87.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHHHHHHhcCCCeEEEEeCCCccccccCccccccCCCCCC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRNVLIATENKSILAVEDIDCSINLQGRHSQAKTLNPVN 111 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~ 111 (192)
..++|+|||||||||+++++|..++.++...+...+.....+...+....++.|+|+||++.+..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~--------------- 116 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNK--------------- 116 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCH---------------
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCH---------------
Confidence 46999999999999999999999999887777766666666666666666788999999998753
Q ss_pred CCCCCCcccCCCCCcchHHHHHHhhcCccc------ccccc----CCCcceEEEEe---CCccccccCCCcceeEEEecC
Q 040463 112 SNAIKPVTNVNQEPKVTLSGLLNFIDGVCR------AVEMR----GSQYSQLIIKT---DLTLNLLLRPGCMDMHIHMSY 178 (192)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~------~~~~~----~~~~~~iiv~t---~~l~~~l~~~~rf~~~i~~~~ 178 (192)
.....++..+..... ....+ .-+...++.++ ..+++.+++ ||...+.+++
T Consensus 117 ---------------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~ 179 (334)
T 1in4_A 117 ---------------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDF 179 (334)
T ss_dssp ---------------HHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCC
T ss_pred ---------------HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCC
Confidence 112223322221110 00000 00011233333 678888998 9988899999
Q ss_pred CCHHHHHHHHHhc
Q 040463 179 CTPCGLKMLASNY 191 (192)
Q Consensus 179 p~~~~r~~i~~~~ 191 (192)
|+.+++.+++++.
T Consensus 180 ~~~~~l~~iL~~~ 192 (334)
T 1in4_A 180 YTVKELKEIIKRA 192 (334)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999998753
No 70
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.43 E-value=9e-14 Score=101.84 Aligned_cols=62 Identities=10% Similarity=-0.037 Sum_probs=48.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHHHHHHhcCCCeEEEEeCCCcccc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRNVLIATENKSILAVEDIDCSIN 96 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~Il~lDeid~l~~ 96 (192)
.+++|+||||||||++|+++++... +++.+++..+... .....+.. ..++++||||+|.+..
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~-~~~~~~~~-a~~~~l~lDei~~l~~ 89 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLID-MPMELLQK-AEGGVLYVGDIAQYSR 89 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHH-CHHHHHHH-TTTSEEEEEECTTCCH
T ss_pred CcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChH-hhhhHHHh-CCCCeEEEeChHHCCH
Confidence 5799999999999999999999888 8888888875432 23334443 3578999999999854
No 71
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.42 E-value=7.2e-12 Score=103.85 Aligned_cols=120 Identities=16% Similarity=0.101 Sum_probs=87.7
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCC------------------------cEEEeecC---CCCChhHHHHHHHhcC--
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNF------------------------DVCDLELT---TLRDNTKLRNVLIATE-- 81 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~------------------------~~~~i~~~---~~~~~~~l~~~~~~~~-- 81 (192)
+..+||+||||+|||++++++|+.+.. .+..+... .-.+.+.+++.+....
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~~ 103 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEH 103 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTSC
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhhc
Confidence 447999999999999999999998742 34555543 2233455666665543
Q ss_pred ----CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe
Q 040463 82 ----NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT 157 (192)
Q Consensus 82 ----~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t 157 (192)
++.|++|||+|.+.. ...+.|+..++.-.. ...+|++|
T Consensus 104 ~~~~~~kvviIdead~l~~------------------------------~a~naLLk~lEep~~--------~~~~Il~t 145 (334)
T 1a5t_A 104 ARLGGAKVVWVTDAALLTD------------------------------AAANALLKTLEEPPA--------ETWFFLAT 145 (334)
T ss_dssp CTTSSCEEEEESCGGGBCH------------------------------HHHHHHHHHHTSCCT--------TEEEEEEE
T ss_pred cccCCcEEEEECchhhcCH------------------------------HHHHHHHHHhcCCCC--------CeEEEEEe
Confidence 468999999999853 346778888876433 23455555
Q ss_pred ---CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 158 ---DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 158 ---~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
+.+.+.+++ |+ ..+.|++|+.++..++++..
T Consensus 146 ~~~~~l~~ti~S--Rc-~~~~~~~~~~~~~~~~L~~~ 179 (334)
T 1a5t_A 146 REPERLLATLRS--RC-RLHYLAPPPEQYAVTWLSRE 179 (334)
T ss_dssp SCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHH
T ss_pred CChHhCcHHHhh--cc-eeeeCCCCCHHHHHHHHHHh
Confidence 678999999 88 46999999999999887653
No 72
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.38 E-value=1.6e-12 Score=106.70 Aligned_cols=128 Identities=18% Similarity=0.136 Sum_probs=79.1
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCChhHHHHHHHhc------------------CCCeEEEEe
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDNTKLRNVLIAT------------------ENKSILAVE 89 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~~~l~~~~~~~------------------~~~~Il~lD 89 (192)
..++||+||||||||++|+++++.. +.+++.++|+.+.. ..+...++.. +.+++||||
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~-~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LD 103 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNE-SLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 103 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCH-HHHHHHHTCCCSSCCC---CCCCCHHHHHTTSEEEEE
T ss_pred CCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCCh-HHHHHHhcCccccccCchhhhhcCHHHhcCCCEEEEe
Confidence 4579999999999999999999976 56799999988643 2222222111 136799999
Q ss_pred CCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCcccc--cccc-CCCcceEEEEe-C-------
Q 040463 90 DIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRA--VEMR-GSQYSQLIIKT-D------- 158 (192)
Q Consensus 90 eid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~~~~-~~~~~~iiv~t-~------- 158 (192)
|++.+.. ..+..|+..++...-. .... ...+.+||.+| .
T Consensus 104 Ei~~l~~------------------------------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~ 153 (304)
T 1ojl_A 104 EIGDISP------------------------------LMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVS 153 (304)
T ss_dssp SCTTCCH------------------------------HHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHH
T ss_pred ccccCCH------------------------------HHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHH
Confidence 9999854 3456666666543200 0000 00134566666 2
Q ss_pred --CccccccCCCcc-eeEEEecCCC--HHHHHHHHHhc
Q 040463 159 --LTLNLLLRPGCM-DMHIHMSYCT--PCGLKMLASNY 191 (192)
Q Consensus 159 --~l~~~l~~~~rf-~~~i~~~~p~--~~~r~~i~~~~ 191 (192)
.+.+.|.. || ...|.+|++. .++...|++++
T Consensus 154 ~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~ 189 (304)
T 1ojl_A 154 AGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHF 189 (304)
T ss_dssp HTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHH
T ss_pred hCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHH
Confidence 23445555 66 3457777776 45555566554
No 73
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.38 E-value=1.7e-12 Score=113.29 Aligned_cols=125 Identities=12% Similarity=0.089 Sum_probs=79.5
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCC--cEEEeecCCCCChhHH-----------HHHHHhcC-----CCeEEEEeCCC
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNF--DVCDLELTTLRDNTKL-----------RNVLIATE-----NKSILAVEDID 92 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~--~~~~i~~~~~~~~~~l-----------~~~~~~~~-----~~~Il~lDeid 92 (192)
+.++||+||||||||++|+++|+.++. ++..+.+.. ...+.+ ...+.... .++|+||||++
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~-~t~~dL~G~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~ 119 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRF-STPEEVFGPLSIQALKDEGRYERLTSGYLPEAEIVFLDEIW 119 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTT-CCHHHHHCCBC----------CBCCTTSGGGCSEEEEESGG
T ss_pred CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhc-CCHHHhcCcccHHHHhhchhHHhhhccCCCcceeeeHHhHh
Confidence 357999999999999999999998854 444444432 111211 11222121 35689999998
Q ss_pred ccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCC---CcceEEEEe-CCccc------
Q 040463 93 CSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGS---QYSQLIIKT-DLTLN------ 162 (192)
Q Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~---~~~~iiv~t-~~l~~------ 162 (192)
.+.+ ...+.|+..++...-.. .|. -+.+++|++ ..+++
T Consensus 120 r~~~------------------------------~~q~~LL~~lee~~v~i--~G~~~~~~~~~iI~ATN~lpe~~~~~~ 167 (500)
T 3nbx_X 120 KAGP------------------------------AILNTLLTAINERQFRN--GAHVEKIPMRLLVAASNELPEADSSLE 167 (500)
T ss_dssp GCCH------------------------------HHHHHHHHHHHSSEEEC--SSSEEECCCCEEEEEESSCCCTTCTTH
T ss_pred hhcH------------------------------HHHHHHHHHHHHHhccC--CCCcCCcchhhhhhccccCCCccccHH
Confidence 7643 56677777775322100 000 023454444 55555
Q ss_pred cccCCCcceeEEEecCCCH-HHHHHHHHh
Q 040463 163 LLLRPGCMDMHIHMSYCTP-CGLKMLASN 190 (192)
Q Consensus 163 ~l~~~~rf~~~i~~~~p~~-~~r~~i~~~ 190 (192)
++++ ||...+.+++|+. +++.+|++.
T Consensus 168 aLld--RF~~~i~v~~p~~~ee~~~IL~~ 194 (500)
T 3nbx_X 168 ALYD--RMLIRLWLDKVQDKANFRSMLTS 194 (500)
T ss_dssp HHHT--TCCEEEECCSCCCHHHHHHHHTC
T ss_pred HHHH--HHHHHHHHHHhhhhhhHHHHHhc
Confidence 8999 9999999999997 778888865
No 74
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.36 E-value=3.4e-12 Score=117.76 Aligned_cols=126 Identities=17% Similarity=0.243 Sum_probs=88.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCCh-------------------hHHHHHHHhcCCCeEEEEeC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDN-------------------TKLRNVLIATENKSILAVED 90 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~-------------------~~l~~~~~~~~~~~Il~lDe 90 (192)
.+||+||||||||++|+++++.+ +.+++.++|+.+... ..+...+.. ..+++|||||
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~-~~~~vl~lDE 668 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRR-RPYSVILFDE 668 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHH-CSSEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHh-CCCeEEEEec
Confidence 69999999999999999999998 788999999877542 112222222 3468999999
Q ss_pred CCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccC--CC-cceEEEEe-CC-------
Q 040463 91 IDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRG--SQ-YSQLIIKT-DL------- 159 (192)
Q Consensus 91 id~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~--~~-~~~iiv~t-~~------- 159 (192)
++.+.. .+++.|+..++.-.-.. ..+ .+ ...+||+| ..
T Consensus 669 i~~l~~------------------------------~~~~~Ll~~l~~~~~~~-~~g~~vd~~~~iiI~tsn~~~~~~~~ 717 (854)
T 1qvr_A 669 IEKAHP------------------------------DVFNILLQILDDGRLTD-SHGRTVDFRNTVIILTSNLGSPLILE 717 (854)
T ss_dssp GGGSCH------------------------------HHHHHHHHHHTTTEECC-SSSCCEECTTEEEEEECCTTHHHHHH
T ss_pred ccccCH------------------------------HHHHHHHHHhccCceEC-CCCCEeccCCeEEEEecCcChHHHhh
Confidence 998754 57788888887543110 000 00 23456665 21
Q ss_pred ----------------------ccccccCCCcceeEEEecCCCHHHHHHHHHhcC
Q 040463 160 ----------------------TLNLLLRPGCMDMHIHMSYCTPCGLKMLASNYF 192 (192)
Q Consensus 160 ----------------------l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~l 192 (192)
+.|+|++ ||+..+.|.+|+.+++..|+++++
T Consensus 718 ~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l 770 (854)
T 1qvr_A 718 GLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQL 770 (854)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHH
T ss_pred hcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHH
Confidence 2345555 999999999999999999987653
No 75
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.36 E-value=5.1e-12 Score=104.71 Aligned_cols=117 Identities=13% Similarity=0.187 Sum_probs=78.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh-CC----------------------------cEEEeecCCCCChh--HHHHHHHhc--
Q 040463 34 YLLYSPPRTGKSSLTAAMANYL-NF----------------------------DVCDLELTTLRDNT--KLRNVLIAT-- 80 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~-~~----------------------------~~~~i~~~~~~~~~--~l~~~~~~~-- 80 (192)
++|+||+|+|||+++++++..+ +. .++.++........ .+++.+...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 118 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQ 118 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----CCHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHH
Confidence 9999999999999999999964 11 12333333221111 234433322
Q ss_pred --------------CCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCcccccccc
Q 040463 81 --------------ENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMR 146 (192)
Q Consensus 81 --------------~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 146 (192)
.+|.|++|||++.+.. ...+.++..++....
T Consensus 119 ~~~~~~~~~ls~l~~~~~vlilDE~~~L~~------------------------------~~~~~L~~~le~~~~----- 163 (354)
T 1sxj_E 119 MEQVDFQDSKDGLAHRYKCVIINEANSLTK------------------------------DAQAALRRTMEKYSK----- 163 (354)
T ss_dssp TTC------------CCEEEEEECTTSSCH------------------------------HHHHHHHHHHHHSTT-----
T ss_pred hccccccccccccCCCCeEEEEeCccccCH------------------------------HHHHHHHHHHHhhcC-----
Confidence 2567999999999533 345667777765533
Q ss_pred CCCcceEEEEe---CCccccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 147 GSQYSQLIIKT---DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 147 ~~~~~~iiv~t---~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
..++|++| +.+.+.+++ |+ ..+.|++|+.+++.++++..
T Consensus 164 ---~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~ 205 (354)
T 1sxj_E 164 ---NIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDV 205 (354)
T ss_dssp ---TEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHH
T ss_pred ---CCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHH
Confidence 23566666 678888888 88 77999999999999988753
No 76
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.35 E-value=1.8e-12 Score=107.01 Aligned_cols=125 Identities=18% Similarity=0.186 Sum_probs=75.8
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCc---------------------------------EEEeecCCCCChhHH-----
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFD---------------------------------VCDLELTTLRDNTKL----- 73 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~---------------------------------~~~i~~~~~~~~~~l----- 73 (192)
.++||+||||||||++|+++++.++.. ++.+.... ....+
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~g~~~ 123 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGV--SEDRVVGALD 123 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTC--CHHHHHCEEC
T ss_pred ceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCcccccCCCc--chhhheeech
Confidence 469999999999999999999988631 11111111 11111
Q ss_pred -HHHHHhc-----------CCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccc
Q 040463 74 -RNVLIAT-----------ENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCR 141 (192)
Q Consensus 74 -~~~~~~~-----------~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 141 (192)
...+... +.+++|||||+|.+.. ..++.|+..++.-..
T Consensus 124 ~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~------------------------------~~~~~Ll~~le~~~~ 173 (350)
T 1g8p_A 124 IERAISKGEKAFEPGLLARANRGYLYIDECNLLED------------------------------HIVDLLLDVAQSGEN 173 (350)
T ss_dssp HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH------------------------------HHHHHHHHHHHHSEE
T ss_pred hhhhhcCCceeecCceeeecCCCEEEEeChhhCCH------------------------------HHHHHHHHHHhcCce
Confidence 1112111 1378999999999854 345566665553110
Q ss_pred cccccCCC---cceE-EEEe-----CCccccccCCCcceeEEEecCC-CHHHHHHHHHh
Q 040463 142 AVEMRGSQ---YSQL-IIKT-----DLTLNLLLRPGCMDMHIHMSYC-TPCGLKMLASN 190 (192)
Q Consensus 142 ~~~~~~~~---~~~i-iv~t-----~~l~~~l~~~~rf~~~i~~~~p-~~~~r~~i~~~ 190 (192)
.....+.. ..++ +++| ..+++++++ ||+..+.+++| +.+.+.+|+++
T Consensus 174 ~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 174 VVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp EECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHH
T ss_pred EEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 00000100 1123 3333 278999999 99999999999 67777788754
No 77
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.35 E-value=3.4e-12 Score=116.35 Aligned_cols=116 Identities=19% Similarity=0.144 Sum_probs=75.2
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEeecCCC-C--ChhHHHHHHHhc--CCCeEEEEeCCCc
Q 040463 29 AWKRGYLLYSPPRTGKSSLTAAMANYL----------NFDVCDLELTTL-R--DNTKLRNVLIAT--ENKSILAVEDIDC 93 (192)
Q Consensus 29 ~~~~~ilL~GppGtGKt~l~~~ia~~~----------~~~~~~i~~~~~-~--~~~~l~~~~~~~--~~~~Il~lDeid~ 93 (192)
..+.++||+||||||||++|+++|+.+ +.+++.+++..- . ....+...+..+ ..++|||||
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD---- 274 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID---- 274 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHHHHHHHHHTCCCCEEEEC----
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccccchHHHHHHHHHHHHHhcCCEEEEEc----
Confidence 445689999999999999999999997 778887776111 1 122455555544 368999999
Q ss_pred cccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---C-----Ccccccc
Q 040463 94 SINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---D-----LTLNLLL 165 (192)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~-----~l~~~l~ 165 (192)
.. . ...+.|+..++ . + ..++|.+| + .+++++.
T Consensus 275 -~~--~---------------------------~~~~~L~~~l~----~----~--~v~~I~at~~~~~~~~~~~d~al~ 314 (758)
T 3pxi_A 275 -AA--I---------------------------DASNILKPSLA----R----G--ELQCIGATTLDEYRKYIEKDAALE 314 (758)
T ss_dssp -C-------------------------------------CCCTT----S----S--SCEEEEECCTTTTHHHHTTCSHHH
T ss_pred -Cc--h---------------------------hHHHHHHHHHh----c----C--CEEEEeCCChHHHHHHhhccHHHH
Confidence 11 0 11122322222 1 1 23455555 3 5899999
Q ss_pred CCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 166 RPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 166 ~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
| || ..|.|+.|+.+++.+|++.+
T Consensus 315 r--Rf-~~i~v~~p~~~~~~~il~~~ 337 (758)
T 3pxi_A 315 R--RF-QPIQVDQPSVDESIQILQGL 337 (758)
T ss_dssp H--SE-EEEECCCCCHHHHHHHHHHT
T ss_pred h--hC-cEEEeCCCCHHHHHHHHHHH
Confidence 9 99 56999999999999999854
No 78
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.34 E-value=4.2e-12 Score=109.93 Aligned_cols=116 Identities=18% Similarity=0.150 Sum_probs=74.3
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEeecCCCC-C--hhHHHHHHHhc--CCCeEEEEeCCCc
Q 040463 29 AWKRGYLLYSPPRTGKSSLTAAMANYL----------NFDVCDLELTTLR-D--NTKLRNVLIAT--ENKSILAVEDIDC 93 (192)
Q Consensus 29 ~~~~~ilL~GppGtGKt~l~~~ia~~~----------~~~~~~i~~~~~~-~--~~~l~~~~~~~--~~~~Il~lDeid~ 93 (192)
..+.++||+||||||||++++++|+.+ +.+++.++++.-. + ...+...+..+ ..++|||||
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLfiD---- 274 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID---- 274 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHHHHHHHHHTCCCCEEEEC----
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccccchHHHHHHHHHHHHHhcCCeEEEEe----
Confidence 344689999999999999999999997 7788888776211 1 23445555544 258999999
Q ss_pred cccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---C-----Ccccccc
Q 040463 94 SINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---D-----LTLNLLL 165 (192)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~-----~l~~~l~ 165 (192)
.. . ...+.|+..+. . + ..++|.+| + .+++++.
T Consensus 275 -~~---~--------------------------~a~~~L~~~L~----~----g--~v~vI~at~~~e~~~~~~~~~al~ 314 (468)
T 3pxg_A 275 -AA---I--------------------------DASNILKPSLA----R----G--ELQCIGATTLDEYRKYIEKDAALE 314 (468)
T ss_dssp -C-------------------------------------CCCTT----S----S--SCEEEEECCTTTTHHHHTTCSHHH
T ss_pred -Cc---h--------------------------hHHHHHHHhhc----C----C--CEEEEecCCHHHHHHHhhcCHHHH
Confidence 11 0 11122322222 1 1 22444444 2 4789999
Q ss_pred CCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 166 RPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 166 ~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
+ ||. .|.|++|+.+++.+|++.+
T Consensus 315 ~--Rf~-~i~v~~p~~e~~~~iL~~~ 337 (468)
T 3pxg_A 315 R--RFQ-PIQVDQPSVDESIQILQGL 337 (468)
T ss_dssp H--SEE-EEECCCCCHHHHHHHHHHT
T ss_pred H--hCc-cceeCCCCHHHHHHHHHHH
Confidence 9 997 4999999999999999865
No 79
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.34 E-value=3.4e-12 Score=105.75 Aligned_cols=117 Identities=19% Similarity=0.247 Sum_probs=83.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEeecCCCCChhHHHHHHHh----c----CCCeEEEEeCCCccccccC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLN-----FDVCDLELTTLRDNTKLRNVLIA----T----ENKSILAVEDIDCSINLQG 99 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~-----~~~~~i~~~~~~~~~~l~~~~~~----~----~~~~Il~lDeid~l~~~~~ 99 (192)
.++|+||||||||++++++|+.+. ..+..++.+...+...+++.+.. . ..+.|+++||+|.+..
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~--- 124 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN--- 124 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH---
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH---
Confidence 399999999999999999999863 34677777664444444433321 1 2368999999998743
Q ss_pred ccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---CCccccccCCCcceeEEEe
Q 040463 100 RHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNLLLRPGCMDMHIHM 176 (192)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~~l~~~l~~~~rf~~~i~~ 176 (192)
...+.|+..++.... ...+++++ ..+.+.+.+ |+. .+.|
T Consensus 125 ---------------------------~~~~~L~~~le~~~~--------~~~~il~~n~~~~i~~~i~s--R~~-~~~~ 166 (340)
T 1sxj_C 125 ---------------------------AAQNALRRVIERYTK--------NTRFCVLANYAHKLTPALLS--QCT-RFRF 166 (340)
T ss_dssp ---------------------------HHHHHHHHHHHHTTT--------TEEEEEEESCGGGSCHHHHT--TSE-EEEC
T ss_pred ---------------------------HHHHHHHHHHhcCCC--------CeEEEEEecCccccchhHHh--hce-eEec
Confidence 245667777765543 23466666 678888998 885 6899
Q ss_pred cCCCHHHHHHHHHh
Q 040463 177 SYCTPCGLKMLASN 190 (192)
Q Consensus 177 ~~p~~~~r~~i~~~ 190 (192)
++++.++..+++.+
T Consensus 167 ~~l~~~~~~~~l~~ 180 (340)
T 1sxj_C 167 QPLPQEAIERRIAN 180 (340)
T ss_dssp CCCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHH
Confidence 99999988877754
No 80
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.33 E-value=6.9e-12 Score=103.03 Aligned_cols=116 Identities=10% Similarity=0.135 Sum_probs=88.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh------CCcEEEeecCC-CCChhHHHHHHHhcC------CCeEEEEeCCCcccccc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL------NFDVCDLELTT-LRDNTKLRNVLIATE------NKSILAVEDIDCSINLQ 98 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~------~~~~~~i~~~~-~~~~~~l~~~~~~~~------~~~Il~lDeid~l~~~~ 98 (192)
..+|||||||+|||++++++|+.+ +..+..++.+. -.+-+.+++.+..+. +.-|++|||+|.+-.
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~-- 96 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ-- 96 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH--
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCH--
Confidence 479999999999999999999864 45688888764 344556666666553 347999999999843
Q ss_pred CccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---CCccccccCCCcceeEEE
Q 040463 99 GRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---DLTLNLLLRPGCMDMHIH 175 (192)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~~l~~~l~~~~rf~~~i~ 175 (192)
...+.|+..++....+ ..+|++| ..+.+.+++ | .++
T Consensus 97 ----------------------------~a~naLLk~LEep~~~--------t~fIl~t~~~~kl~~tI~S--R---~~~ 135 (305)
T 2gno_A 97 ----------------------------QAANAFLKALEEPPEY--------AVIVLNTRRWHYLLPTIKS--R---VFR 135 (305)
T ss_dssp ----------------------------HHHHHTHHHHHSCCTT--------EEEEEEESCGGGSCHHHHT--T---SEE
T ss_pred ----------------------------HHHHHHHHHHhCCCCC--------eEEEEEECChHhChHHHHc--e---eEe
Confidence 3467788888766443 3455665 788999999 8 799
Q ss_pred ecCCCHHHHHHHHHh
Q 040463 176 MSYCTPCGLKMLASN 190 (192)
Q Consensus 176 ~~~p~~~~r~~i~~~ 190 (192)
|++|+.++..+++++
T Consensus 136 f~~l~~~~i~~~L~~ 150 (305)
T 2gno_A 136 VVVNVPKEFRDLVKE 150 (305)
T ss_dssp EECCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999888765
No 81
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.32 E-value=5e-12 Score=126.79 Aligned_cols=136 Identities=18% Similarity=0.237 Sum_probs=89.0
Q ss_pred CccEEEEcCCCCcHHHHH-HHHHHHhCCcEEEeecCCCCChhHHHHHHHhc-----------------CCCeEEEEeCCC
Q 040463 31 KRGYLLYSPPRTGKSSLT-AAMANYLNFDVCDLELTTLRDNTKLRNVLIAT-----------------ENKSILAVEDID 92 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~-~~ia~~~~~~~~~i~~~~~~~~~~l~~~~~~~-----------------~~~~Il~lDeid 92 (192)
+.++||+||||||||++| +.++...+..+..++++...+...+.+.+... .+++|+||||+|
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEin 1346 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEIN 1346 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccc
Confidence 368999999999999999 44554457788899999988877777766532 134799999999
Q ss_pred ccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe----C------Cccc
Q 040463 93 CSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT----D------LTLN 162 (192)
Q Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t----~------~l~~ 162 (192)
.... .+.+.+. ....+..++ +..+++...........++.+++ . .+++
T Consensus 1347 mp~~--d~yg~q~-------------------~lelLRq~l-e~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~ 1404 (2695)
T 4akg_A 1347 LPKL--DKYGSQN-------------------VVLFLRQLM-EKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSE 1404 (2695)
T ss_dssp CSCC--CSSSCCH-------------------HHHHHHHHH-HTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCH
T ss_pred cccc--cccCchh-------------------HHHHHHHHH-hcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCCh
Confidence 8644 3332211 122333332 22344322100000012244443 2 5899
Q ss_pred cccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 163 LLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 163 ~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
+++| || ..+.++.|+.+++.+|++.+
T Consensus 1405 rllR--rf-~vi~i~~P~~~~l~~I~~~i 1430 (2695)
T 4akg_A 1405 RFTR--HA-AILYLGYPSGKSLSQIYEIY 1430 (2695)
T ss_dssp HHHT--TE-EEEECCCCTTTHHHHHHHHH
T ss_pred hhhh--ee-eEEEeCCCCHHHHHHHHHHH
Confidence 9999 99 77999999999999999765
No 82
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.18 E-value=1.6e-10 Score=97.13 Aligned_cols=130 Identities=8% Similarity=0.076 Sum_probs=79.4
Q ss_pred CccEEE--EcCCCCcHHHHHHHHHHHh---------CCcEEEeecCCCCCh----------------------h----HH
Q 040463 31 KRGYLL--YSPPRTGKSSLTAAMANYL---------NFDVCDLELTTLRDN----------------------T----KL 73 (192)
Q Consensus 31 ~~~ilL--~GppGtGKt~l~~~ia~~~---------~~~~~~i~~~~~~~~----------------------~----~l 73 (192)
+..+++ +||+|+|||++++++++.+ +..++.+++...... . .+
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 129 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKAL 129 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 346889 9999999999999999876 456777776432211 1 12
Q ss_pred HHHHHhcCCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccc-cccccCCCcce
Q 040463 74 RNVLIATENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCR-AVEMRGSQYSQ 152 (192)
Q Consensus 74 ~~~~~~~~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~~~~~~~ 152 (192)
...+....+|.+|+|||++.+.. .+. .....+..++..+..... .. ..+..
T Consensus 130 ~~~l~~~~~~~llvlDe~~~l~~--~~~----------------------~~~~~l~~l~~~~~~~~~~~~----~~~v~ 181 (412)
T 1w5s_A 130 VDNLYVENHYLLVILDEFQSMLS--SPR----------------------IAAEDLYTLLRVHEEIPSRDG----VNRIG 181 (412)
T ss_dssp HHHHHHHTCEEEEEEESTHHHHS--CTT----------------------SCHHHHHHHHTHHHHSCCTTS----CCBEE
T ss_pred HHHHHhcCCeEEEEEeCHHHHhh--ccC----------------------cchHHHHHHHHHHHhcccCCC----CceEE
Confidence 22233334689999999999854 100 012344445444443320 00 00223
Q ss_pred EEEEe--C----Ccc---ccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 153 LIIKT--D----LTL---NLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 153 iiv~t--~----~l~---~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
+|+++ . .++ +.+.+ ++...+.+++++.++..+++++
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~ 226 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQ 226 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHH
T ss_pred EEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHH
Confidence 44444 2 334 55666 5655699999999999999864
No 83
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.10 E-value=2.5e-10 Score=84.19 Aligned_cols=60 Identities=17% Similarity=0.124 Sum_probs=47.4
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCChhHHHHHHHhcCCCeEEEEeCCCcccc
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDNTKLRNVLIATENKSILAVEDIDCSIN 96 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~~~l~~~~~~~~~~~Il~lDeid~l~~ 96 (192)
....++|+||+|+|||+++++++..+ |..++.++...+... ....++.+|+|||++.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~~lLilDE~~~~~~ 97 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-------DAAFEAEYLAVDQVEKLGN 97 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-------GGGGGCSEEEEESTTCCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-------HHHhCCCEEEEeCccccCh
Confidence 34569999999999999999999987 666888887776544 1123689999999998644
No 84
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.10 E-value=1.4e-11 Score=109.66 Aligned_cols=125 Identities=15% Similarity=0.110 Sum_probs=75.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEee----cCCCCC---hhHHH-------HHHHhcCCCeEEEEeCCCcccccc
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDLE----LTTLRD---NTKLR-------NVLIATENKSILAVEDIDCSINLQ 98 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~----~~~~~~---~~~l~-------~~~~~~~~~~Il~lDeid~l~~~~ 98 (192)
++||+||||||||++|+++|+.++...+... +..+.. ..... ..+.. +.++|+||||+|.+..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~-A~~gil~IDEid~l~~-- 405 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVL-ADGGIAVIDEIDKMRD-- 405 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHH-HSSSEECCTTTTCCCS--
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEe-cCCCcEEeehhhhCCH--
Confidence 6999999999999999999999876654321 111110 00000 00111 1468999999999854
Q ss_pred CccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCC----CcceEEEEe----C------------
Q 040463 99 GRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGS----QYSQLIIKT----D------------ 158 (192)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~----~~~~iiv~t----~------------ 158 (192)
.....|+..|+.-.-.-...|. +....+++| .
T Consensus 406 ----------------------------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~n 457 (595)
T 3f9v_A 406 ----------------------------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDN 457 (595)
T ss_dssp ----------------------------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTT
T ss_pred ----------------------------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhc
Confidence 4556677777543211000000 011233444 2
Q ss_pred -CccccccCCCcce-eEEEecCCCHHHHHHHHHhc
Q 040463 159 -LTLNLLLRPGCMD-MHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 159 -~l~~~l~~~~rf~-~~i~~~~p~~~~r~~i~~~~ 191 (192)
.+++++++ ||+ ..+..+.|+.+ ...|.++.
T Consensus 458 i~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~i 489 (595)
T 3f9v_A 458 INLPPTILS--RFDLIFILKDQPGEQ-DRELANYI 489 (595)
T ss_dssp TCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHH
T ss_pred cCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHH
Confidence 78999999 997 45667777777 77777653
No 85
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.06 E-value=1.4e-10 Score=87.35 Aligned_cols=65 Identities=18% Similarity=0.284 Sum_probs=45.1
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHh----CCcEEEeecCCCCChhHHH---------HHHHhcCCCeEEEEeCCCcc
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYL----NFDVCDLELTTLRDNTKLR---------NVLIATENKSILAVEDIDCS 94 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~----~~~~~~i~~~~~~~~~~l~---------~~~~~~~~~~Il~lDeid~l 94 (192)
...+.+++|+||+|||||+++++++..+ |..++.++...+.. .+. ..+....+|.+|+|||++..
T Consensus 35 ~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 35 PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIF--RLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSE 112 (180)
T ss_dssp GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHH--HHHHHHHHTCCSHHHHHHHTCSEEEEETCSSS
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHH--HHHHHhcCchHHHHHHHhcCCCEEEEeCCCCC
Confidence 3445679999999999999999999887 55565665544321 111 22233346899999999864
No 86
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.93 E-value=3e-09 Score=107.04 Aligned_cols=125 Identities=16% Similarity=0.109 Sum_probs=91.1
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHHHHHHhcC-CCeEEEEeCCCccccccCccccccCCCC
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRNVLIATE-NKSILAVEDIDCSINLQGRHSQAKTLNP 109 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~~~~~~~~-~~~Il~lDeid~l~~~~~~~~~~~~~~~ 109 (192)
..+.++.||+|||||.+++++|+.+|.+++.++|+.-.+...+.+.|..+. .++.+++||++.+..
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~------------- 711 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDE------------- 711 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSCH-------------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcCh-------------
Confidence 357899999999999999999999999999999999888888888887765 489999999999754
Q ss_pred CCCCCCCCcccCCCCCcchHHHHHHhhc----C-------ccccccccCCCcceEEEEe--------CCccccccCCCcc
Q 040463 110 VNSNAIKPVTNVNQEPKVTLSGLLNFID----G-------VCRAVEMRGSQYSQLIIKT--------DLTLNLLLRPGCM 170 (192)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~----~-------~~~~~~~~~~~~~~iiv~t--------~~l~~~l~~~~rf 170 (192)
.+++.+...++ . +......-.......+++| ..+++++++ ||
T Consensus 712 -----------------evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F 772 (2695)
T 4akg_A 712 -----------------KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF 772 (2695)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE
T ss_pred -----------------HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he
Confidence 23333321111 0 1000000000122345666 578999998 88
Q ss_pred eeEEEecCCCHHHHHHHH
Q 040463 171 DMHIHMSYCTPCGLKMLA 188 (192)
Q Consensus 171 ~~~i~~~~p~~~~r~~i~ 188 (192)
+.|.+..|+.+...+|.
T Consensus 773 -r~v~m~~Pd~~~i~ei~ 789 (2695)
T 4akg_A 773 -REFSMKSPQSGTIAEMI 789 (2695)
T ss_dssp -EEEECCCCCHHHHHHHH
T ss_pred -EEEEeeCCCHHHHHHHH
Confidence 67999999999988874
No 87
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.91 E-value=1.5e-08 Score=83.04 Aligned_cols=35 Identities=34% Similarity=0.283 Sum_probs=30.0
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTT 66 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~ 66 (192)
..++++||+|+|||++++.+++..+..++.+++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 37999999999999999999999877777777653
No 88
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.83 E-value=1.5e-08 Score=78.16 Aligned_cols=114 Identities=13% Similarity=0.109 Sum_probs=68.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH--------hC-CcEEEeecCCCCC---------------------hhHHHHHHH-hcC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANY--------LN-FDVCDLELTTLRD---------------------NTKLRNVLI-ATE 81 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~--------~~-~~~~~i~~~~~~~---------------------~~~l~~~~~-~~~ 81 (192)
-.+++|+||||||+++..++.. .| .+++..++..+.- ...+.+.+. ...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPEN 86 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcccc
Confidence 4678999999999998776443 23 5554444433210 112222211 223
Q ss_pred CCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe---C
Q 040463 82 NKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT---D 158 (192)
Q Consensus 82 ~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t---~ 158 (192)
+++||+|||++.+.+ .+.... + . ..++..+...... .-.||++| .
T Consensus 87 ~~~vliIDEAq~l~~--~~~~~~-------------------e---~-~rll~~l~~~r~~-------~~~iil~tq~~~ 134 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWP--ARSAGS-------------------K---I-PENVQWLNTHRHQ-------GIDIFVLTQGPK 134 (199)
T ss_dssp TTCEEEETTGGGTSB--CCCTTC-------------------C---C-CHHHHGGGGTTTT-------TCEEEEEESCGG
T ss_pred CceEEEEEChhhhcc--Cccccc-------------------h---h-HHHHHHHHhcCcC-------CeEEEEECCCHH
Confidence 589999999999965 221110 0 1 1344444332211 33578888 7
Q ss_pred CccccccCCCcceeEEEecCCC
Q 040463 159 LTLNLLLRPGCMDMHIHMSYCT 180 (192)
Q Consensus 159 ~l~~~l~~~~rf~~~i~~~~p~ 180 (192)
.++..+++ |+..+++++.|.
T Consensus 135 ~l~~~lr~--ri~~~~~l~~~~ 154 (199)
T 2r2a_A 135 LLDQNLRT--LVRKHYHIASNK 154 (199)
T ss_dssp GBCHHHHT--TEEEEEEEEECS
T ss_pred HHhHHHHH--HhheEEEEcCcc
Confidence 88889888 999999888754
No 89
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.83 E-value=4.3e-09 Score=80.41 Aligned_cols=64 Identities=23% Similarity=0.286 Sum_probs=43.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCC-------hhHHHHHHHhcCCCeEEEEeCCCccc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRD-------NTKLRNVLIATENKSILAVEDIDCSI 95 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~-------~~~l~~~~~~~~~~~Il~lDeid~l~ 95 (192)
.+++|+||||||||++++++++.+ +.+++.+++..+.. ...+...+.....+.+|+|||++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDei~~~~ 128 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKKVPVLMLDDLGAEA 128 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHHSSEEEEEEECCC-
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCc
Confidence 689999999999999999999987 56777777654321 00011122222345799999997753
No 90
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.83 E-value=9.8e-09 Score=79.51 Aligned_cols=61 Identities=18% Similarity=0.253 Sum_probs=40.3
Q ss_pred cCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHHHHHHhcCCCeEEEEeCCCc
Q 040463 27 GRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRNVLIATENKSILAVEDIDC 93 (192)
Q Consensus 27 ~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~Il~lDeid~ 93 (192)
+.+.++++++|||||||||++|.++|+.+.-.++....+. ... .+......-|++|||+|.
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~---s~f---~l~~l~~~kIiiLDEad~ 114 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST---SHF---WLEPLTDTKVAMLDDATT 114 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS---SCG---GGGGGTTCSSEEEEEECH
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc---chh---hhcccCCCCEEEEECCCc
Confidence 3566668999999999999999999999865443211110 000 112222345999999985
No 91
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.80 E-value=5e-09 Score=101.83 Aligned_cols=124 Identities=11% Similarity=0.082 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHh----------HHHHHH---------------hc---CCCCccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 4 NMKHMKMDDLERFVKR----------KEFYRN---------------VG---RAWKRGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 4 ~~~~~l~~~~~~~l~~----------~~~~~~---------------~~---~~~~~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
+.|+.+++.+.++++. +..++. +| .+..+.+++|||||||||++|.+++.+.
T Consensus 1027 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT~la~~~~~~~ 1106 (1706)
T 3cmw_A 1027 ENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 1106 (1706)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCChHHHHHHHHHHh
Confidence 5678888888888854 223333 21 2223339999999999999999999876
Q ss_pred ---CCcEEEeecCCCC----------------------ChhHHHHHHHhc--CCCeEEEEeCCCccccccCccc--cccC
Q 040463 56 ---NFDVCDLELTTLR----------------------DNTKLRNVLIAT--ENKSILAVEDIDCSINLQGRHS--QAKT 106 (192)
Q Consensus 56 ---~~~~~~i~~~~~~----------------------~~~~l~~~~~~~--~~~~Il~lDeid~l~~~~~~~~--~~~~ 106 (192)
+-+.+.++..... ++..+..++..+ ..|+++|+|+++.+.+ .+.. +...
T Consensus 1107 ~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~--~~~~~g~~~~ 1184 (1706)
T 3cmw_A 1107 QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP--KAEIEGEIGD 1184 (1706)
T ss_dssp HHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC--HHHHHSCTTC
T ss_pred hhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc--cccccccccc
Confidence 4555555554422 133444444323 3699999999999987 4321 1110
Q ss_pred CCCCCCCCCCCcccCCCCCcchHHHHHHhhcCcccc
Q 040463 107 LNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRA 142 (192)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 142 (192)
...+...+.++.++..+++....
T Consensus 1185 -------------~~~~~~~r~~~q~l~~~~~~~~~ 1207 (1706)
T 3cmw_A 1185 -------------SHMGLAARMMSQAMRKLAGNLKQ 1207 (1706)
T ss_dssp -------------CCTTHHHHHHHHHHHHHHHHHHH
T ss_pred -------------ccccHHHHHHHHHHHHHHhhhcc
Confidence 00122234678888888886543
No 92
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.79 E-value=1.2e-08 Score=103.69 Aligned_cols=136 Identities=12% Similarity=0.234 Sum_probs=85.4
Q ss_pred CccEEEEcCCCCcHHHHHHH-HHHHhCCcEEEeecCCCCChhHHHHHHHhc------------------CCCeEEEEeCC
Q 040463 31 KRGYLLYSPPRTGKSSLTAA-MANYLNFDVCDLELTTLRDNTKLRNVLIAT------------------ENKSILAVEDI 91 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~-ia~~~~~~~~~i~~~~~~~~~~l~~~~~~~------------------~~~~Il~lDei 91 (192)
+..+||+||||||||++++. +++..+.+++.++++...+...+...+... ++..|+||||+
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDi 1383 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEI 1383 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEeccc
Confidence 35799999999999977655 444446678899999988888887777521 12369999999
Q ss_pred CccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcc-eEEEEe---------CCcc
Q 040463 92 DCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYS-QLIIKT---------DLTL 161 (192)
Q Consensus 92 d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~-~iiv~t---------~~l~ 161 (192)
+.... ++.+.+. .-..+..+++. .++............ ..+|+| ..++
T Consensus 1384 Nmp~~--D~yGtQ~-------------------~ielLrqlld~-~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~ 1441 (3245)
T 3vkg_A 1384 NLPST--DKYGTQR-------------------VITFIRQMVEK-GGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLT 1441 (3245)
T ss_dssp TCCCC--CTTSCCH-------------------HHHHHHHHHHH-SEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCC
T ss_pred CCCCc--ccccccc-------------------HHHHHHHHHHc-CCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCC
Confidence 98644 3332211 11233333322 222221100000011 233444 3589
Q ss_pred ccccCCCcceeEEEecCCCHHHHHHHHHhc
Q 040463 162 NLLLRPGCMDMHIHMSYCTPCGLKMLASNY 191 (192)
Q Consensus 162 ~~l~~~~rf~~~i~~~~p~~~~r~~i~~~~ 191 (192)
++++| ||.. +.+++|+.++...|+..+
T Consensus 1442 ~Rf~r--~F~v-i~i~~ps~esL~~If~ti 1468 (3245)
T 3vkg_A 1442 HRFLR--HAPI-LLVDFPSTSSLTQIYGTF 1468 (3245)
T ss_dssp HHHHT--TCCE-EECCCCCHHHHHHHHHHH
T ss_pred HHHHh--hceE-EEeCCCCHHHHHHHHHHH
Confidence 99998 8855 999999999999997653
No 93
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.79 E-value=1.6e-07 Score=75.52 Aligned_cols=59 Identities=19% Similarity=0.258 Sum_probs=38.4
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHHHHHHhcCCCeEEEEeCCCcc
Q 040463 29 AWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRNVLIATENKSILAVEDIDCS 94 (192)
Q Consensus 29 ~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~Il~lDeid~l 94 (192)
+++++++||||||||||+++.++|+.++. +..++.+. ... .+......-|++.||....
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~~---~~f---~l~~~~~k~i~l~Ee~~~~ 160 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTN---ENF---PFNDCVDKMVIWWEEGKMT 160 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTC---SSC---TTGGGSSCSEEEECSCCEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc-cceeeccc---ccc---ccccccccEEEEeccccch
Confidence 44567999999999999999999998765 33343321 110 2333334566677776554
No 94
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.72 E-value=2.2e-08 Score=89.12 Aligned_cols=25 Identities=52% Similarity=0.599 Sum_probs=23.1
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
..++|+||||||||+++++++..+.
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 4799999999999999999999874
No 95
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.72 E-value=1.1e-07 Score=79.77 Aligned_cols=126 Identities=14% Similarity=0.170 Sum_probs=79.8
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCc--EEEeecCCCCChhHHHHHHHh------------------cCCCeEEEEeCC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFD--VCDLELTTLRDNTKLRNVLIA------------------TENKSILAVEDI 91 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~--~~~i~~~~~~~~~~l~~~~~~------------------~~~~~Il~lDei 91 (192)
..++++|++||||+++++++....+.. ++.++|..+... .+...++. .+..+.||||||
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~-~~~~~lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei 231 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQE-LAESELFGHEKGAFTGALTRKKGKLELADQGTLFLDEV 231 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTT-THHHHHHEECSCSSSSCCCCEECHHHHTTTSEEEEETG
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChH-HHHHHhcCccccccCCcccccCChHhhcCCCeEEecCh
Confidence 459999999999999999999988654 999999997643 22222221 124678999999
Q ss_pred CccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCC-----CcceEEEEe-CCcccccc
Q 040463 92 DCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGS-----QYSQLIIKT-DLTLNLLL 165 (192)
Q Consensus 92 d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~-----~~~~iiv~t-~~l~~~l~ 165 (192)
+.+.. ..+..|+..++.-.-.. .|. -..++|.+| ..+...+
T Consensus 232 ~~l~~------------------------------~~Q~~Ll~~l~~~~~~~--~g~~~~~~~~~rii~at~~~l~~~v- 278 (368)
T 3dzd_A 232 GELDQ------------------------------RVQAKLLRVLETGSFTR--LGGNQKIEVDIRVISATNKNLEEEI- 278 (368)
T ss_dssp GGSCH------------------------------HHHHHHHHHHHHSEECC--BTCCCBEECCCEEEEEESSCHHHHH-
T ss_pred hhCCH------------------------------HHHHHHHHHHHhCCccc--CCCCcceeeeeEEEEecCCCHHHHH-
Confidence 99854 45666776664321000 010 034577777 3333222
Q ss_pred CCC--------cce-eEEEecCCCH--HHHHHHHHhc
Q 040463 166 RPG--------CMD-MHIHMSYCTP--CGLKMLASNY 191 (192)
Q Consensus 166 ~~~--------rf~-~~i~~~~p~~--~~r~~i~~~~ 191 (192)
..| |+. ..|.+|+..+ ++...|++++
T Consensus 279 ~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~ 315 (368)
T 3dzd_A 279 KKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYF 315 (368)
T ss_dssp HTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHH
T ss_pred HcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHH
Confidence 122 332 3588888877 6666666655
No 96
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.68 E-value=2.1e-08 Score=82.72 Aligned_cols=68 Identities=13% Similarity=0.139 Sum_probs=41.5
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeec--CC----C-CChhHHH-HHHHhcC-CCeEEEEeCCCcccc
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLEL--TT----L-RDNTKLR-NVLIATE-NKSILAVEDIDCSIN 96 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~--~~----~-~~~~~l~-~~~~~~~-~~~Il~lDeid~l~~ 96 (192)
++....++|+||||||||+++.++|...+..+++++. .. . .+.+.+. .+..... .+ +|+||+++.+..
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~-LLVIDsI~aL~~ 196 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR-VIVIDSLKNVIG 196 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS-EEEEECCTTTC-
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC-EEEEeccccccc
Confidence 3444457999999999999999999875544333333 11 1 1222222 1222221 23 999999999864
No 97
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.67 E-value=2.1e-07 Score=75.97 Aligned_cols=31 Identities=32% Similarity=0.164 Sum_probs=26.1
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeec
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLEL 64 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~ 64 (192)
..++++||+|+|||++++.+++..+ ++.+++
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~ 62 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP--GILIDC 62 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEe
Confidence 4799999999999999999999875 555554
No 98
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.65 E-value=1.6e-08 Score=82.98 Aligned_cols=64 Identities=30% Similarity=0.415 Sum_probs=41.9
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhC----CcEEEeecCCCCC-------hhHHHHHHHhcCCCeEEEEeCCCcc
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLN----FDVCDLELTTLRD-------NTKLRNVLIATENKSILAVEDIDCS 94 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~----~~~~~i~~~~~~~-------~~~l~~~~~~~~~~~Il~lDeid~l 94 (192)
..+++||||||||||+++.++|+.+. .++..+++..+.. ...+...+....+..+|+|||++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHHTSSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 46899999999999999999998764 6677666543211 0011111122224679999999765
No 99
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.63 E-value=2.5e-07 Score=78.08 Aligned_cols=65 Identities=11% Similarity=0.125 Sum_probs=49.3
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhC---CcEEEeecCCCCChhHHHHHHHhc------------------CCCeEEEEe
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLN---FDVCDLELTTLRDNTKLRNVLIAT------------------ENKSILAVE 89 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~---~~~~~i~~~~~~~~~~l~~~~~~~------------------~~~~Il~lD 89 (192)
...++++|++||||+++++++..... .+++.++|+.+.. ..+...++.. +.+++||||
T Consensus 160 ~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~-~~~~~elfg~~~g~~tga~~~~~g~~~~a~~gtlfld 238 (387)
T 1ny5_A 160 ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPR-DIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLD 238 (387)
T ss_dssp CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCH-HHHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEE
T ss_pred CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCH-HHHHHHhcCCCCCCCCCcccccCCceeeCCCcEEEEc
Confidence 34689999999999999999998764 6899999998753 2233333321 246899999
Q ss_pred CCCcccc
Q 040463 90 DIDCSIN 96 (192)
Q Consensus 90 eid~l~~ 96 (192)
|++.+..
T Consensus 239 ei~~l~~ 245 (387)
T 1ny5_A 239 EIGELSL 245 (387)
T ss_dssp SGGGCCH
T ss_pred ChhhCCH
Confidence 9999854
No 100
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.60 E-value=2.7e-07 Score=93.95 Aligned_cols=124 Identities=15% Similarity=0.056 Sum_probs=89.8
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHHHHHHhcC-CCeEEEEeCCCccccccCccccccCCCCC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRNVLIATE-NKSILAVEDIDCSINLQGRHSQAKTLNPV 110 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~~~~~~~~-~~~Il~lDeid~l~~~~~~~~~~~~~~~~ 110 (192)
.|..+.||+|||||.+++.+|+.+|.+++..+|+.-.+...+.++|..+. .++-.++||++.+-.
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~~-------------- 670 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEE-------------- 670 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSSCH--------------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcCCH--------------
Confidence 46789999999999999999999999999999999888888888887775 588999999999854
Q ss_pred CCCCCCCcccCCCCCcchHHHHHHhhc---C-ccc---ccccc-C----CCcceEEEEe--------CCccccccCCCcc
Q 040463 111 NSNAIKPVTNVNQEPKVTLSGLLNFID---G-VCR---AVEMR-G----SQYSQLIIKT--------DLTLNLLLRPGCM 170 (192)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~ll~~l~---~-~~~---~~~~~-~----~~~~~iiv~t--------~~l~~~l~~~~rf 170 (192)
.+++.+...+. . +.. ..... | .....-+|+| ..++++++. ||
T Consensus 671 ----------------~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF 732 (3245)
T 3vkg_A 671 ----------------RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF 732 (3245)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE
T ss_pred ----------------HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc
Confidence 23333322221 0 000 00000 1 0123355666 688999998 88
Q ss_pred eeEEEecCCCHHHHHHHH
Q 040463 171 DMHIHMSYCTPCGLKMLA 188 (192)
Q Consensus 171 ~~~i~~~~p~~~~r~~i~ 188 (192)
+.|.+..|+.+...+|.
T Consensus 733 -r~v~m~~Pd~~~i~ei~ 749 (3245)
T 3vkg_A 733 -RSMAMIKPDREMIAQVM 749 (3245)
T ss_dssp -EEEECCSCCHHHHHHHH
T ss_pred -EEEEEeCCCHHHHHHHH
Confidence 56999999999988874
No 101
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.57 E-value=9.4e-08 Score=80.53 Aligned_cols=66 Identities=21% Similarity=0.259 Sum_probs=46.4
Q ss_pred cCCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCCCChhHHHHHHHhcCCCeEEEEeCCCcccc
Q 040463 27 GRAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTLRDNTKLRNVLIATENKSILAVEDIDCSIN 96 (192)
Q Consensus 27 ~~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~Il~lDeid~l~~ 96 (192)
+.+.+..++|+||||+||||++++++...+-.++.+.... ......+...-...++++||++.+..
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~----~~~~~~lg~~~q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL----DRLNFELGVAIDQFLVVFEDVKGTGG 230 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT----TTHHHHHGGGTTCSCEEETTCCCSTT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc----hhHHHHHHHhcchhHHHHHHHHHHHH
Confidence 5666677999999999999999999998877665533221 11121233333557789999999864
No 102
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.32 E-value=9.8e-07 Score=87.07 Aligned_cols=76 Identities=13% Similarity=0.149 Sum_probs=52.4
Q ss_pred HHHHHhc---CCCCccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCC---------------------ChhHH
Q 040463 21 EFYRNVG---RAWKRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLR---------------------DNTKL 73 (192)
Q Consensus 21 ~~~~~~~---~~~~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~---------------------~~~~l 73 (192)
.+-.-+| ++.+.+++|+||||||||+||.+++... |..+..+++.... ..++.
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~ 1493 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQA 1493 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHH
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHH
Confidence 3344445 6667789999999999999999998765 4556666655431 11233
Q ss_pred HHHHHhc---CCCeEEEEeCCCcccc
Q 040463 74 RNVLIAT---ENKSILAVEDIDCSIN 96 (192)
Q Consensus 74 ~~~~~~~---~~~~Il~lDeid~l~~ 96 (192)
.+.++.. .+|.+|+||+++.+.+
T Consensus 1494 l~~~~~lvr~~~~~lVVIDsi~al~p 1519 (2050)
T 3cmu_A 1494 LEICDALARSGAVDVIVVDSVAALTP 1519 (2050)
T ss_dssp HHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred HHHHHHHHhcCCCCEEEEcChhHhcc
Confidence 3333332 5799999999998875
No 103
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.30 E-value=4.6e-06 Score=62.86 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=23.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDV 59 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~ 59 (192)
.+.|.||+|+||||+++.++..++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 367899999999999999999876543
No 104
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.22 E-value=1.4e-05 Score=61.00 Aligned_cols=39 Identities=18% Similarity=0.089 Sum_probs=30.7
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCC
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTT 66 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~ 66 (192)
++...-++|+||||+|||+++..++...+..++.++...
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 455445889999999999999999985566777776654
No 105
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.12 E-value=2.8e-06 Score=62.53 Aligned_cols=31 Identities=19% Similarity=0.208 Sum_probs=27.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~ 63 (192)
-|+|.||||+||||+++.+++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4789999999999999999999998887654
No 106
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.12 E-value=1.8e-06 Score=64.64 Aligned_cols=32 Identities=19% Similarity=0.192 Sum_probs=29.0
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~ 63 (192)
..|+|+|||||||||+++.+|+.++.+++..+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 47999999999999999999999999988654
No 107
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.10 E-value=3.1e-06 Score=62.89 Aligned_cols=32 Identities=19% Similarity=0.192 Sum_probs=28.2
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~ 63 (192)
..|+|.|+||+||||+++.+++.++.+++.++
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~ 35 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFG 35 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEec
Confidence 45889999999999999999999998877654
No 108
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.10 E-value=2.1e-06 Score=65.38 Aligned_cols=33 Identities=30% Similarity=0.315 Sum_probs=29.2
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~ 63 (192)
...|+|.|||||||||+++.++..++.+++..+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 346899999999999999999999999887654
No 109
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.08 E-value=3.2e-06 Score=63.44 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=29.0
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 29 AWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 29 ~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
..+.-|+|.|+||+||||+++.++..++..++..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 3445688999999999999999999999887764
No 110
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.07 E-value=3.3e-05 Score=59.20 Aligned_cols=36 Identities=14% Similarity=-0.063 Sum_probs=26.1
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEee
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLE 63 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~ 63 (192)
++....++|+||+|+|||++++.++... +..++.++
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4444458899999999999999999654 34444443
No 111
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.99 E-value=4.2e-06 Score=62.96 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=28.1
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHH-hCCcEEEee
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANY-LNFDVCDLE 63 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~-~~~~~~~i~ 63 (192)
+..|+|+|+|||||||+++.++.. ++.+++..+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 345999999999999999999999 787777643
No 112
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.98 E-value=2.9e-05 Score=68.72 Aligned_cols=33 Identities=33% Similarity=0.319 Sum_probs=25.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeec
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLEL 64 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~ 64 (192)
..+++.||||||||+++.+++..+ +..++.+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 468889999999999999998865 555554433
No 113
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.98 E-value=5.4e-06 Score=61.86 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=28.7
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~ 63 (192)
+..|+|+|+||+||||+++.+++.++..++..+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 346999999999999999999999998877653
No 114
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.98 E-value=9.1e-06 Score=65.78 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=26.9
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeec
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLEL 64 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~ 64 (192)
+..++|.||||+||||+++.++..++..++.++.
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 3458889999999999999999988544455554
No 115
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.98 E-value=5.9e-06 Score=61.40 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=27.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~ 63 (192)
.|+|.|||||||||+++.+|+.++.+++..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d 36 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSD 36 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEccc
Confidence 5899999999999999999999998887643
No 116
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.97 E-value=6.7e-06 Score=60.63 Aligned_cols=32 Identities=28% Similarity=0.356 Sum_probs=28.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~ 63 (192)
.+|+|.|+|||||||+++.+|..++.+++..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 47999999999999999999999999988653
No 117
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.96 E-value=3.8e-05 Score=64.09 Aligned_cols=66 Identities=9% Similarity=0.104 Sum_probs=44.5
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCC---------------------hhHHHHHHH---hcCCC
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRD---------------------NTKLRNVLI---ATENK 83 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~---------------------~~~l~~~~~---~~~~~ 83 (192)
..-++|+||||+|||+|+..++..+ +..+++++...... ..++...+. ....+
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~ 140 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVV 140 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCC
Confidence 3348899999999999999998875 45666776654221 112222222 22468
Q ss_pred eEEEEeCCCcccc
Q 040463 84 SILAVEDIDCSIN 96 (192)
Q Consensus 84 ~Il~lDeid~l~~ 96 (192)
.++++|.+..+.+
T Consensus 141 dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 141 DLIVVDSVAALVP 153 (356)
T ss_dssp SEEEEECTTTCCC
T ss_pred CeEEehHhhhhcC
Confidence 8999999998864
No 118
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.96 E-value=7.8e-06 Score=60.36 Aligned_cols=30 Identities=33% Similarity=0.551 Sum_probs=26.8
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCD 61 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~ 61 (192)
..|.|.||+||||||+++.++..++..++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 468999999999999999999999887665
No 119
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.95 E-value=5.3e-06 Score=62.06 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=28.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~ 63 (192)
.|+|.|+||+||||+++.+++.++.+++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 5899999999999999999999999887654
No 120
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.89 E-value=1e-05 Score=59.60 Aligned_cols=31 Identities=13% Similarity=0.321 Sum_probs=27.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~ 63 (192)
.|+|.|+||+||||+++.+++.++.+++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 5899999999999999999999998877643
No 121
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.88 E-value=1e-05 Score=64.26 Aligned_cols=32 Identities=25% Similarity=0.440 Sum_probs=28.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEeec
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDLEL 64 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~ 64 (192)
-++|.|||||||||+++.+|..++..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999988876654
No 122
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.88 E-value=1.1e-05 Score=59.15 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=25.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
-|+|.||||+||||+++.+ +.+|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4789999999999999999 8889887764
No 123
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.87 E-value=1.6e-05 Score=60.41 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=27.8
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
..|+|.|+||+||||+++.+++.++.+++..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 3588999999999999999999999888765
No 124
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.87 E-value=1.2e-05 Score=60.12 Aligned_cols=32 Identities=13% Similarity=0.176 Sum_probs=28.0
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
+..|+|.|+|||||||+++.+++.++..++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 34688999999999999999999999877765
No 125
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.87 E-value=1.3e-05 Score=69.28 Aligned_cols=61 Identities=23% Similarity=0.220 Sum_probs=37.6
Q ss_pred cEEEEcCCCCcHHHHHHHH-HHHhCCcEEEeecCCCCChhHHHHHH------------HhcCCCeEEEEeCCCcccc
Q 040463 33 GYLLYSPPRTGKSSLTAAM-ANYLNFDVCDLELTTLRDNTKLRNVL------------IATENKSILAVEDIDCSIN 96 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~i-a~~~~~~~~~i~~~~~~~~~~l~~~~------------~~~~~~~Il~lDeid~l~~ 96 (192)
++||.|+||| ||++++++ ++.+....+. ... ..+...+...+ ...+..+++|+||++.+-.
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR~~ft-~g~-~ss~~gLt~s~r~~tG~~~~~G~l~LAdgGvl~lDEIn~~~~ 314 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPRGVYV-DLR-RTELTDLTAVLKEDRGWALRAGAAVLADGGILAVDHLEGAPE 314 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSSEEEE-EGG-GCCHHHHSEEEEESSSEEEEECHHHHTTTSEEEEECCTTCCH
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCCeEEe-cCC-CCCccCceEEEEcCCCcccCCCeeEEcCCCeeehHhhhhCCH
Confidence 5999999999 99999999 7766543332 111 11111111000 0012479999999999754
No 126
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.87 E-value=9.4e-05 Score=60.76 Aligned_cols=119 Identities=12% Similarity=0.072 Sum_probs=74.4
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh---CC-cEEEeecCCCCChhHHHHHHHhc---CCCeEEEEeCCCc-cccccCccc
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL---NF-DVCDLELTTLRDNTKLRNVLIAT---ENKSILAVEDIDC-SINLQGRHS 102 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~---~~-~~~~i~~~~~~~~~~l~~~~~~~---~~~~Il~lDeid~-l~~~~~~~~ 102 (192)
...+|||||+|.||++.++.+++.+ +. +...+....-..-.++.+..... ...-|+++||++. +..
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~------ 91 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNA------ 91 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTTCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCT------
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCCCCHHHHHHHhcCcCCccCCeEEEEECCCCCCCh------
Confidence 3479999999999999999998865 32 22222222212222333222221 3568999999988 532
Q ss_pred cccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEeC---------CccccccCCCcceeE
Q 040463 103 QAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKTD---------LTLNLLLRPGCMDMH 173 (192)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t~---------~l~~~l~~~~rf~~~ 173 (192)
...+.|+..++....+ ..+|+++. .+.+.+.+ |+ ..
T Consensus 92 ------------------------~~~~aLl~~le~p~~~--------~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~ 136 (343)
T 1jr3_D 92 ------------------------AINEQLLTLTGLLHDD--------LLLIVRGNKLSKAQENAAWFTALAN--RS-VQ 136 (343)
T ss_dssp ------------------------THHHHHHHHHTTCBTT--------EEEEEEESCCCTTTTTSHHHHHHTT--TC-EE
T ss_pred ------------------------HHHHHHHHHHhcCCCC--------eEEEEEcCCCChhhHhhHHHHHHHh--Cc-eE
Confidence 3457787777765433 24445552 24556666 55 56
Q ss_pred EEecCCCHHHHHHHHHh
Q 040463 174 IHMSYCTPCGLKMLASN 190 (192)
Q Consensus 174 i~~~~p~~~~r~~i~~~ 190 (192)
+.+.+++.++..+.++.
T Consensus 137 ~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 137 VTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp EEECCCCTTHHHHHHHH
T ss_pred EEeeCCCHHHHHHHHHH
Confidence 89999998888866654
No 127
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.86 E-value=1.4e-05 Score=60.09 Aligned_cols=31 Identities=10% Similarity=0.177 Sum_probs=27.7
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
.-|+|.|+|||||||+++.+++.++.+++..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4688999999999999999999999887754
No 128
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.85 E-value=1.3e-05 Score=59.97 Aligned_cols=31 Identities=13% Similarity=0.188 Sum_probs=27.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
.-|+|.|+|||||||+++.+++.++.+++..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 4588999999999999999999999877653
No 129
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.85 E-value=1.2e-05 Score=60.07 Aligned_cols=30 Identities=23% Similarity=0.464 Sum_probs=26.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
.|+|.|+|||||||+++.+++.++.+++..
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 488999999999999999999999877654
No 130
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.84 E-value=1.4e-05 Score=60.68 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=28.1
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~ 63 (192)
.-|+|.|++|+||||+++.++..++..++..+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEeCC
Confidence 36899999999999999999999998877643
No 131
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.84 E-value=1.4e-05 Score=61.37 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=26.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
|+|.||||+||||+++.+++.++..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 78999999999999999999999888765
No 132
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.83 E-value=1.5e-05 Score=62.04 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=28.3
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCD 61 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~ 61 (192)
...++-|+|.||||+||+|.++.+++.++.+.+.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIs 59 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLS 59 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEEC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence 3444568889999999999999999999877654
No 133
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.83 E-value=1.2e-05 Score=60.07 Aligned_cols=30 Identities=10% Similarity=0.272 Sum_probs=26.0
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhC-----CcEEE
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLN-----FDVCD 61 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~-----~~~~~ 61 (192)
.-|+|.|+||+||||+++.+++.++ .+++.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~ 38 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS 38 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEe
Confidence 3588999999999999999999987 66665
No 134
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.83 E-value=1.6e-05 Score=58.31 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=27.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
.|+|.|+||+||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 378999999999999999999999888764
No 135
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.83 E-value=1.5e-05 Score=61.07 Aligned_cols=29 Identities=14% Similarity=0.214 Sum_probs=26.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
|+|.||||+||||+++.+++.++..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 78999999999999999999999888765
No 136
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.82 E-value=1e-05 Score=60.90 Aligned_cols=31 Identities=13% Similarity=0.244 Sum_probs=27.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
.-|+|.|+||+||||+++.+++.++..++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4688999999999999999999999877654
No 137
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.82 E-value=1.8e-05 Score=62.66 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=28.7
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCC
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELTT 66 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~ 66 (192)
+..++|.|+||+||||+++.++..++..++.++...
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~ 67 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDS 67 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHH
Confidence 345889999999999999999999976555555443
No 138
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.81 E-value=6.3e-05 Score=62.56 Aligned_cols=67 Identities=10% Similarity=0.147 Sum_probs=44.3
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCC---------------------hhHHHHHHH---hcCC
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRD---------------------NTKLRNVLI---ATEN 82 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~---------------------~~~l~~~~~---~~~~ 82 (192)
....++|+||||+|||+++..++... +..+++++...-.. ..++...+. ....
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~ 139 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGA 139 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCC
Confidence 33348899999999999999998754 45666666543211 112222222 2235
Q ss_pred CeEEEEeCCCcccc
Q 040463 83 KSILAVEDIDCSIN 96 (192)
Q Consensus 83 ~~Il~lDeid~l~~ 96 (192)
+.+|++|++..+..
T Consensus 140 ~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 140 LDIIVIDSVAALVP 153 (349)
T ss_dssp CSEEEEECGGGCCC
T ss_pred CCEEEEcChHhhcc
Confidence 89999999999863
No 139
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.81 E-value=1.6e-05 Score=61.24 Aligned_cols=31 Identities=16% Similarity=0.266 Sum_probs=27.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
..|+|.|+||+||||+++.+++.++.+++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 3588999999999999999999999877764
No 140
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.81 E-value=1.6e-05 Score=61.28 Aligned_cols=30 Identities=13% Similarity=0.231 Sum_probs=27.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
.|+|.|+||+||||+++.+++.++.+++..
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 588999999999999999999999888765
No 141
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.80 E-value=1.7e-05 Score=61.18 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=25.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLNFDVCD 61 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~~~~~~ 61 (192)
|+|.||||+||+|.++.+|+.++.+.+.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 7788999999999999999999987765
No 142
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.79 E-value=3.6e-05 Score=58.20 Aligned_cols=30 Identities=13% Similarity=0.149 Sum_probs=21.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCcEEEe
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL---NFDVCDL 62 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i 62 (192)
-++++||+|+||||++-.++..+ +..++.+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 47789999999999986555543 5555443
No 143
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.79 E-value=1.8e-05 Score=61.39 Aligned_cols=31 Identities=10% Similarity=0.270 Sum_probs=27.7
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
..|+|.|+||+||||+++.+++.++..++..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 4689999999999999999999999887754
No 144
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.78 E-value=1.2e-05 Score=60.40 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=28.2
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~ 63 (192)
+..+..+.|.||+|+||||+++.++...+...+.++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~ 41 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFH 41 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEEC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEc
Confidence 344445889999999999999999998766655554
No 145
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.78 E-value=0.00017 Score=60.33 Aligned_cols=69 Identities=13% Similarity=0.166 Sum_probs=46.2
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCC---------------------hhHHHHHHH---hc
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRD---------------------NTKLRNVLI---AT 80 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~---------------------~~~l~~~~~---~~ 80 (192)
++....++|+||||+|||+++..++... +..+++++...-.. .+++...+. ..
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~ 150 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRS 150 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhc
Confidence 3344458899999999999999888764 55677776654221 122333332 22
Q ss_pred CCCeEEEEeCCCcccc
Q 040463 81 ENKSILAVEDIDCSIN 96 (192)
Q Consensus 81 ~~~~Il~lDeid~l~~ 96 (192)
..+.+|+||.+..+..
T Consensus 151 ~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 151 GAIDVVVVDSVAALTP 166 (366)
T ss_dssp TCCSEEEEECTTTCCC
T ss_pred CCCCEEEEeChHHhcc
Confidence 4688999999999863
No 146
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.78 E-value=1.2e-05 Score=59.41 Aligned_cols=29 Identities=21% Similarity=0.183 Sum_probs=24.0
Q ss_pred ccEEEEcCCCCcHHHHHHHHHH-HhCCcEE
Q 040463 32 RGYLLYSPPRTGKSSLTAAMAN-YLNFDVC 60 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~-~~~~~~~ 60 (192)
.-|+|.|+||+||||+++.+++ .++..++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 3588999999999999999998 5655444
No 147
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.78 E-value=1.2e-05 Score=59.79 Aligned_cols=29 Identities=14% Similarity=0.090 Sum_probs=22.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVC 60 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~ 60 (192)
.-|+|.|+||+||||+++.+++.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 35889999999999999999999998876
No 148
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.78 E-value=6.2e-05 Score=63.75 Aligned_cols=39 Identities=21% Similarity=0.057 Sum_probs=27.6
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEeecCC
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYL---------NFDVCDLELTT 66 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~---------~~~~~~i~~~~ 66 (192)
+....-+.|+||||+|||+|+..++... +..+++++...
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 3444448899999999999999877443 23466666654
No 149
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.76 E-value=2.3e-05 Score=58.02 Aligned_cols=30 Identities=27% Similarity=0.335 Sum_probs=26.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
.++|.||+|+||||+++.++..+|..++..
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~ 39 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQLHAAFLDG 39 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHTCEEEEG
T ss_pred EEEEEcCCCCCHHHHHHHHHHhhCcEEEeC
Confidence 488999999999999999999988776653
No 150
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.76 E-value=1.6e-05 Score=60.34 Aligned_cols=31 Identities=13% Similarity=0.173 Sum_probs=27.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~ 63 (192)
-|+|.|+|||||||+++.+++.++..++..+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 4888999999999999999999998777643
No 151
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.76 E-value=2.7e-05 Score=60.70 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=27.7
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
..|+|.|+|||||||+++.+++.++..++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 3589999999999999999999999877765
No 152
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.74 E-value=0.00027 Score=62.06 Aligned_cols=22 Identities=23% Similarity=0.119 Sum_probs=19.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~ 53 (192)
+-+.++||+|+|||++|+.+++
T Consensus 148 ~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 148 GWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEcCCCCCHHHHHHHHHh
Confidence 4588999999999999999864
No 153
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.74 E-value=2e-05 Score=62.02 Aligned_cols=33 Identities=12% Similarity=0.206 Sum_probs=28.6
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
.+..|+|.||||+||||+++.+++.++..++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 344689999999999999999999998887765
No 154
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.74 E-value=0.00023 Score=58.56 Aligned_cols=68 Identities=10% Similarity=0.035 Sum_probs=44.3
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEeecCCCCC---------------------hhHH-HHHHH--
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYL-----NFDVCDLELTTLRD---------------------NTKL-RNVLI-- 78 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~-----~~~~~~i~~~~~~~---------------------~~~l-~~~~~-- 78 (192)
++.. -++++||||+|||+|+-.++... +..+++++...-.. .+++ .....
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 4443 47789999999999977766543 55677777654321 1222 22221
Q ss_pred ---hcCCCeEEEEeCCCcccc
Q 040463 79 ---ATENKSILAVEDIDCSIN 96 (192)
Q Consensus 79 ---~~~~~~Il~lDeid~l~~ 96 (192)
....|.++++|-+..+.+
T Consensus 105 ~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HTCCTTCCEEEEEECSTTCBC
T ss_pred HHhhccCceEEEEeccccccc
Confidence 123689999999999974
No 155
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.74 E-value=3e-05 Score=58.96 Aligned_cols=30 Identities=13% Similarity=0.352 Sum_probs=26.0
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCD 61 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~ 61 (192)
.-+.|.||+|+||||+++.++..+|..++.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 458899999999999999999999876654
No 156
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.73 E-value=3.2e-05 Score=57.84 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=27.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEee
Q 040463 34 YLLYSPPRTGKSSLTAAMANYL---NFDVCDLE 63 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~ 63 (192)
|.|.|++|+||||+++.+++.+ |.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 7899999999999999999998 88888765
No 157
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.73 E-value=2.5e-05 Score=60.01 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=27.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
.|+|.|+||+||||+++.+++.++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 378999999999999999999999888765
No 158
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.72 E-value=2.2e-05 Score=60.56 Aligned_cols=30 Identities=10% Similarity=0.193 Sum_probs=26.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCD 61 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~ 61 (192)
..|+|.||||+||||+++.+++.++..++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 468999999999999999999999876654
No 159
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.71 E-value=2.9e-05 Score=60.94 Aligned_cols=31 Identities=16% Similarity=0.344 Sum_probs=26.7
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFDVCD 61 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~ 61 (192)
+.-+.|.||+|+||||+++.+++.+|...+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 3468899999999999999999999876554
No 160
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.71 E-value=3.9e-05 Score=57.09 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=28.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeec
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLEL 64 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~ 64 (192)
..|.|.|++|+||||+++.++..+ |.+++.++.
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 347889999999999999999988 888887653
No 161
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.71 E-value=0.00012 Score=61.13 Aligned_cols=69 Identities=13% Similarity=0.161 Sum_probs=46.7
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCC---------------------hhHHHHHHH---hc
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRD---------------------NTKLRNVLI---AT 80 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~---------------------~~~l~~~~~---~~ 80 (192)
++....++++||||+|||+++..++..+ +..+++++...-.. ..++...+. ..
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~ 139 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 139 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhc
Confidence 4444458899999999999999988764 55677777643211 122333332 22
Q ss_pred CCCeEEEEeCCCcccc
Q 040463 81 ENKSILAVEDIDCSIN 96 (192)
Q Consensus 81 ~~~~Il~lDeid~l~~ 96 (192)
..+.+|+||.+..+..
T Consensus 140 ~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 140 GAVDVIVVDSVAALTP 155 (356)
T ss_dssp TCCSEEEEECGGGCCC
T ss_pred cCCCEEEEcCHHHhcc
Confidence 4688999999998863
No 162
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.71 E-value=3e-05 Score=59.69 Aligned_cols=30 Identities=30% Similarity=0.424 Sum_probs=26.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCD 61 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~ 61 (192)
..|.|.||+||||||+++.++..++.+++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 358899999999999999999999877765
No 163
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.69 E-value=3.2e-05 Score=59.94 Aligned_cols=29 Identities=14% Similarity=0.320 Sum_probs=26.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
|+|.|+||+||||+++.+++.++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 78999999999999999999999877655
No 164
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.68 E-value=3.1e-05 Score=58.34 Aligned_cols=29 Identities=17% Similarity=0.469 Sum_probs=25.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCD 61 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~ 61 (192)
.|.|.|++||||||+++.+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 37899999999999999999999986653
No 165
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.68 E-value=4.2e-05 Score=57.39 Aligned_cols=31 Identities=23% Similarity=0.152 Sum_probs=26.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEeec
Q 040463 34 YLLYSPPRTGKSSLTAAMANYL---NFDVCDLEL 64 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~ 64 (192)
|.|.|++||||||+++.+++.+ |.+++....
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 6789999999999999999999 888876543
No 166
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.65 E-value=2.2e-05 Score=58.61 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=22.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
-|+|.|+||+||||+++.+++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999886
No 167
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.65 E-value=0.00011 Score=72.90 Aligned_cols=69 Identities=14% Similarity=0.200 Sum_probs=51.5
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCCh------------------------hHHHHHHHhc
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRDN------------------------TKLRNVLIAT 80 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~~------------------------~~l~~~~~~~ 80 (192)
++...+++++||||||||+++.+++.+. |....++++...... ..+...+.+.
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~~ 1157 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1157 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHHh
Confidence 5566679999999999999999998754 677778877664321 1233344445
Q ss_pred CCCeEEEEeCCCcccc
Q 040463 81 ENKSILAVEDIDCSIN 96 (192)
Q Consensus 81 ~~~~Il~lDeid~l~~ 96 (192)
.+|.++++|++..+.+
T Consensus 1158 ~~~dlvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1158 GAVDVIVVDSVAALTP 1173 (2050)
T ss_dssp TCCSEEEESCGGGCCC
T ss_pred CCCCEEEECCcccccc
Confidence 6799999999999865
No 168
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.64 E-value=4.6e-05 Score=57.59 Aligned_cols=33 Identities=9% Similarity=0.116 Sum_probs=28.0
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh-CCcEEEeec
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL-NFDVCDLEL 64 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~-~~~~~~i~~ 64 (192)
.-|.|.|++|+||||+++.+++.+ +.+++.+..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 358899999999999999999998 577776653
No 169
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.62 E-value=0.0012 Score=57.69 Aligned_cols=22 Identities=18% Similarity=0.153 Sum_probs=20.1
Q ss_pred ccEEEEcCCCCcHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~ 53 (192)
..+.++|+.|+|||+||+.+++
T Consensus 153 ~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 153 FFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4588999999999999999997
No 170
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.60 E-value=4.6e-05 Score=57.78 Aligned_cols=30 Identities=23% Similarity=0.176 Sum_probs=26.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~ 63 (192)
.|.|.|++||||||+++.++. +|.+++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 478999999999999999999 887777654
No 171
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.59 E-value=6.2e-05 Score=59.75 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=29.3
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~ 63 (192)
...|.|.|++|+||||+++.+|..++.+++..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 346999999999999999999999999888753
No 172
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.58 E-value=4.9e-05 Score=62.59 Aligned_cols=33 Identities=24% Similarity=0.452 Sum_probs=29.2
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeec
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLEL 64 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~ 64 (192)
..|+|+||+|+|||++++.+|+.++..++..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 468899999999999999999999988887753
No 173
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.58 E-value=0.0013 Score=61.89 Aligned_cols=22 Identities=14% Similarity=0.166 Sum_probs=19.7
Q ss_pred ccEEEEcCCCCcHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~ 53 (192)
+-+.++|+.|.|||+||+.+++
T Consensus 151 RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 151 KNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp CEEEECCSTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCccHHHHHHHHHH
Confidence 4588999999999999999885
No 174
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.57 E-value=6.4e-05 Score=56.86 Aligned_cols=31 Identities=23% Similarity=0.196 Sum_probs=27.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~ 63 (192)
.|.|.|++|+||||+++.++..++.+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 5789999999999999999999998877643
No 175
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.56 E-value=5e-05 Score=57.75 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=25.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
.+.|.||+||||||+++.++. +|.+++..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccch
Confidence 478999999999999999998 78777654
No 176
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.56 E-value=6.5e-05 Score=57.27 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=27.7
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~ 63 (192)
..|.|.|++||||||+++.+++.+|.+++..+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 34789999999999999999999898887643
No 177
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.56 E-value=9.8e-05 Score=54.83 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=16.2
Q ss_pred cEEEEcCCCCcHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAA 50 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ 50 (192)
-+.|.||+|+||||+++.
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999993
No 178
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.56 E-value=7.2e-05 Score=58.84 Aligned_cols=31 Identities=29% Similarity=0.263 Sum_probs=27.2
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
..+.|.||+|+||||+++.++..++.+++..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d~ 40 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLDT 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 4588999999999999999999999877653
No 179
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.54 E-value=0.00017 Score=55.76 Aligned_cols=39 Identities=15% Similarity=0.080 Sum_probs=29.6
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHH--h-------CCcEEEeecCC
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANY--L-------NFDVCDLELTT 66 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~--~-------~~~~~~i~~~~ 66 (192)
++...-++|+||||+|||++++.++.. . +..++.++...
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 444555889999999999999999985 2 34566776654
No 180
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.54 E-value=5.6e-05 Score=57.26 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=23.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCc
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFD 58 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~ 58 (192)
-|+|.|+||+||||+++.++++++..
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 58899999999999999999998763
No 181
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.53 E-value=0.0001 Score=55.89 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=22.4
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
+.-+.|.||+||||||+++.++..+
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3458889999999999999999988
No 182
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.52 E-value=0.00017 Score=59.11 Aligned_cols=39 Identities=8% Similarity=0.043 Sum_probs=30.3
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEeecCC
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYL---------NFDVCDLELTT 66 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~---------~~~~~~i~~~~ 66 (192)
++....++++||||+|||+++..++... +..+++++...
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 4444458899999999999999999875 45677777665
No 183
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.52 E-value=8.7e-05 Score=58.89 Aligned_cols=31 Identities=32% Similarity=0.380 Sum_probs=26.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH---hCCcEEEee
Q 040463 33 GYLLYSPPRTGKSSLTAAMANY---LNFDVCDLE 63 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~---~~~~~~~i~ 63 (192)
-|+|.|+||+||||+++.++.. .|..++.++
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 5889999999999999999998 677776443
No 184
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.51 E-value=0.0008 Score=63.32 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=20.0
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
+-+.|+|+.|+|||+||+.+++.
T Consensus 148 ~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 148 GWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp EEEEEECSTTSSHHHHHHHHTCC
T ss_pred CEEEEEeCCCCCHHHHHHHHhcC
Confidence 34789999999999999988765
No 185
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.50 E-value=0.0001 Score=58.28 Aligned_cols=29 Identities=31% Similarity=0.452 Sum_probs=26.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCD 61 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~ 61 (192)
.|.|.||+||||||+++.+++.+|..++.
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 47899999999999999999999987765
No 186
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.47 E-value=9.1e-05 Score=55.79 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=26.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~ 63 (192)
..|.|.|++||||||+++.+++. |.+++..+
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 35889999999999999999998 87776543
No 187
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.47 E-value=0.002 Score=50.35 Aligned_cols=33 Identities=18% Similarity=0.091 Sum_probs=26.0
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeec
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLEL 64 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~ 64 (192)
..|++.|+||+||||++-.+|..+ |..++.+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 358999999999999988888765 666654444
No 188
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.46 E-value=0.00039 Score=54.24 Aligned_cols=62 Identities=8% Similarity=0.215 Sum_probs=39.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCC-------CCC-------------hhHHHHHHHhc---CCCeEEE
Q 040463 34 YLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTT-------LRD-------------NTKLRNVLIAT---ENKSILA 87 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~-------~~~-------------~~~l~~~~~~~---~~~~Il~ 87 (192)
++++||+|+||||++..++..+ +..++.+.+.. +.+ ..++.+.+... .++.+|+
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvVi 94 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVIG 94 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEEE
Confidence 6678999999999887777655 45555553222 110 12344444432 2478999
Q ss_pred EeCCCccc
Q 040463 88 VEDIDCSI 95 (192)
Q Consensus 88 lDeid~l~ 95 (192)
|||+..+.
T Consensus 95 IDEaQ~l~ 102 (223)
T 2b8t_A 95 IDEVQFFD 102 (223)
T ss_dssp ECSGGGSC
T ss_pred EecCccCc
Confidence 99998763
No 189
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.45 E-value=3.1e-05 Score=58.88 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=23.2
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFD 58 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~ 58 (192)
.-|+|.|++||||||+++.+++.++..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 358899999999999999999987543
No 190
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.43 E-value=0.00013 Score=62.48 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=31.6
Q ss_pred CChHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 1 MDSNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 1 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
|+++|++.+.. +..++... ...+++.|+||||||+++.++++.+
T Consensus 26 Ln~~Q~~av~~-~~~~i~~~----------~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 26 LTEGQKNAFNI-VMKAIKEK----------KHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp CCHHHHHHHHH-HHHHHHSS----------SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHHHhcC----------CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45677776655 33343321 1368999999999999999999877
No 191
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.43 E-value=0.00028 Score=53.97 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=22.8
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
++...-+.|.||+|+||||+++.++...
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4444448899999999999999999854
No 192
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.43 E-value=9.9e-05 Score=55.18 Aligned_cols=25 Identities=8% Similarity=0.211 Sum_probs=21.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
.-+.|.||+|+||||+++.++....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3578999999999999999998764
No 193
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.42 E-value=0.0001 Score=56.05 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=23.5
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
.+.-++|.||||+||||+++.++..++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 344688999999999999999999874
No 194
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.41 E-value=0.00014 Score=60.63 Aligned_cols=23 Identities=43% Similarity=0.577 Sum_probs=20.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
.+++.||+|+||||+.++++..+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47889999999999999998876
No 195
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.41 E-value=0.00035 Score=57.72 Aligned_cols=39 Identities=13% Similarity=0.027 Sum_probs=29.5
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEeecCC
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYL---------NFDVCDLELTT 66 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~---------~~~~~~i~~~~ 66 (192)
++...-++|+||||+|||+++..+|... +..+++++...
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 4444447899999999999999999863 44667776655
No 196
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.41 E-value=0.00014 Score=55.78 Aligned_cols=30 Identities=30% Similarity=0.310 Sum_probs=25.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
.-|.|.|++||||||+++.++. +|.+++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 3588999999999999999998 88777654
No 197
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.40 E-value=0.00021 Score=63.84 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=29.5
Q ss_pred CChHHHHHHHHHHHHHHHhHHHHHHhcCCCCccEEEEcCCCCcHHH-HHHHHHHHh--CCcEEEeec
Q 040463 1 MDSNMKHMKMDDLERFVKRKEFYRNVGRAWKRGYLLYSPPRTGKSS-LTAAMANYL--NFDVCDLEL 64 (192)
Q Consensus 1 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ilL~GppGtGKt~-l~~~ia~~~--~~~~~~i~~ 64 (192)
||++|++++...+. .+.-.|++||||||||+ ++..+++.+ +..++.+..
T Consensus 190 LN~~Q~~AV~~al~---------------~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 190 LDTSQKEAVLFALS---------------QKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp CCHHHHHHHHHHHH---------------CSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCHHHHHHHHHHhc---------------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 56777776655331 11246889999999995 555555544 444444443
No 198
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.39 E-value=0.00068 Score=52.97 Aligned_cols=33 Identities=21% Similarity=0.132 Sum_probs=27.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDLELT 65 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~ 65 (192)
.++++||+|+|||.++-+++...+..++.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 589999999999999988888887666665543
No 199
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.37 E-value=0.0001 Score=55.65 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=22.1
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
+.-+.|.||+|+||||+++.++..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3458899999999999999999876
No 200
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.36 E-value=5.7e-05 Score=57.45 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=22.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
.-|+|.|++|+||||+++.+++.++
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999999864
No 201
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.36 E-value=0.00019 Score=55.89 Aligned_cols=31 Identities=23% Similarity=0.346 Sum_probs=27.1
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
..|.|.|++||||||+++.++..+|.+++..
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 3588999999999999999999999877653
No 202
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.35 E-value=0.00019 Score=54.94 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=27.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
..|.|.|++|||||++++.++..+|.+++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 3588999999999999999999999877664
No 203
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.35 E-value=0.00013 Score=57.37 Aligned_cols=27 Identities=22% Similarity=0.148 Sum_probs=24.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCc
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFD 58 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~ 58 (192)
.-|.|.|++||||||+++.++..++.+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 358899999999999999999999876
No 204
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.34 E-value=0.00052 Score=52.08 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=25.7
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeec
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLEL 64 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~ 64 (192)
.-+.|.|++|+||||+++.++..+ +.++...+.
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~ 58 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM 58 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence 347789999999999999999876 555555433
No 205
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.33 E-value=0.00019 Score=54.76 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
-+.|.||+|+||||+++.++..+.
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 477899999999999999999875
No 206
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.31 E-value=0.0006 Score=66.84 Aligned_cols=70 Identities=14% Similarity=0.190 Sum_probs=50.3
Q ss_pred cCCCCccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCCCCC---------------------hhHHHHHHH---h
Q 040463 27 GRAWKRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTTLRD---------------------NTKLRNVLI---A 79 (192)
Q Consensus 27 ~~~~~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~~~~---------------------~~~l~~~~~---~ 79 (192)
|++....++|+||||||||+++..++... +..+++++...... ...+.+.+. .
T Consensus 30 Gi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~p~t~e~l~~ll~~L~~ 109 (1706)
T 3cmw_A 30 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 109 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHhhccCccceeeeccCcHHHHHHHHHHHHh
Confidence 45666679999999999999999988753 66788877765432 122223222 2
Q ss_pred cCCCeEEEEeCCCcccc
Q 040463 80 TENKSILAVEDIDCSIN 96 (192)
Q Consensus 80 ~~~~~Il~lDeid~l~~ 96 (192)
..++.+|+||++..+..
T Consensus 110 ~~~~~LVVIDSLt~L~~ 126 (1706)
T 3cmw_A 110 SGAVDVIVVDSVAALTP 126 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEcchhhhcc
Confidence 35689999999999875
No 207
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.31 E-value=0.00016 Score=58.88 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=20.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.||+|+||||+++.+|..+
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 37789999999999999999876
No 208
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.30 E-value=0.00018 Score=53.82 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=21.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNF 57 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~ 57 (192)
-+.|.||+|+||||+++.++...+-
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4778999999999999999986643
No 209
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.30 E-value=0.00011 Score=60.77 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=28.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeecC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLELT 65 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~ 65 (192)
.-|+|.||+|+|||+|+..+|+.++.+++..+.-
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 3588999999999999999999998777765544
No 210
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.30 E-value=0.00011 Score=55.99 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=24.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh-CCcEEEe
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL-NFDVCDL 62 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~-~~~~~~i 62 (192)
-+.|.|++|+||||+++.++..+ +..++..
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~ 53 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHLPNCSVISQ 53 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSTTEEEEEG
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEEEeC
Confidence 37789999999999999999977 5555443
No 211
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.28 E-value=0.00027 Score=57.22 Aligned_cols=26 Identities=23% Similarity=0.179 Sum_probs=22.4
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
+.-|.+.||+|+||||+++.++..++
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 33477899999999999999999875
No 212
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.26 E-value=0.00022 Score=58.40 Aligned_cols=34 Identities=18% Similarity=0.439 Sum_probs=28.6
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhCCcEEEeec
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLNFDVCDLEL 64 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~ 64 (192)
+.-+++.||+|+|||+++..+|+.++..++..+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 3457889999999999999999999877766544
No 213
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.25 E-value=0.00017 Score=60.11 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=26.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCD 61 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~ 61 (192)
.+++|+||+|+||||+++++|..++.+++.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 359999999999999999999999877743
No 214
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.24 E-value=0.00023 Score=53.18 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=22.2
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
..|+|.|++|+||||+++.++..++
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3488899999999999999999874
No 215
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.23 E-value=0.00019 Score=54.89 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=22.0
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
.-+.|.||+|+||||+++.++..+.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3478899999999999999999874
No 216
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.23 E-value=0.00019 Score=57.71 Aligned_cols=30 Identities=20% Similarity=0.186 Sum_probs=24.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh-CCcEEE
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL-NFDVCD 61 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~-~~~~~~ 61 (192)
.-|+|.|+||+||||+++.+++.+ +..++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEec
Confidence 358899999999999999999974 655553
No 217
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.22 E-value=0.00028 Score=58.94 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=20.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.||+|+||||+++.+|..+
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHhhc
Confidence 37799999999999999999876
No 218
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.22 E-value=0.00053 Score=50.51 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=21.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.||.|+||||+++.++..+
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999999999987
No 219
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.22 E-value=0.0002 Score=59.30 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=27.1
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~ 63 (192)
.-|+|.||+|+|||++++.+|..++..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 35889999999999999999999986665544
No 220
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.22 E-value=0.00036 Score=53.95 Aligned_cols=39 Identities=21% Similarity=0.094 Sum_probs=27.9
Q ss_pred cCCCCccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecC
Q 040463 27 GRAWKRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELT 65 (192)
Q Consensus 27 ~~~~~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~ 65 (192)
|++....++|+||||+|||+++..++... +..++.++..
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 34455558899999999999988877643 4556665543
No 221
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.22 E-value=0.00079 Score=52.03 Aligned_cols=50 Identities=18% Similarity=0.096 Sum_probs=33.6
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHH----hCCcEEEeecCCCCChhHHHHHHHh
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANY----LNFDVCDLELTTLRDNTKLRNVLIA 79 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~----~~~~~~~i~~~~~~~~~~l~~~~~~ 79 (192)
++...-++++|+||+|||+++-.+|.. .+.+++.++... +..++.+.+..
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~--~~~~~~~~~~~ 80 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE--RARDLRREMAS 80 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS--CHHHHHHHHHT
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC--CHHHHHHHHHH
Confidence 444445889999999999999877653 256777776553 34455444443
No 222
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.22 E-value=0.00024 Score=53.62 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=21.7
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
.-+.|.||+|+||||+++.++....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3477899999999999999998763
No 223
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.22 E-value=0.00094 Score=54.14 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=26.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh----CCcEEEeecCC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL----NFDVCDLELTT 66 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~----~~~~~~i~~~~ 66 (192)
..+.+.||+|+||||++..+|..+ |..+..+++..
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 358889999999999999998765 44566555544
No 224
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.21 E-value=0.0017 Score=49.49 Aligned_cols=62 Identities=13% Similarity=0.225 Sum_probs=39.2
Q ss_pred EEEEcCCCCcHH-HHHHHHHHHh--CCcEEEeecC---CCCC--hhHH------------HHHHHhcCCCeEEEEeCCCc
Q 040463 34 YLLYSPPRTGKS-SLTAAMANYL--NFDVCDLELT---TLRD--NTKL------------RNVLIATENKSILAVEDIDC 93 (192)
Q Consensus 34 ilL~GppGtGKt-~l~~~ia~~~--~~~~~~i~~~---~~~~--~~~l------------~~~~~~~~~~~Il~lDeid~ 93 (192)
.++|||.|+||| .|.+++.++. +..++.+... .... .+.+ .+++.....-.+|+|||+.-
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~~~DvIlIDEaQF 102 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQF 102 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHHTCSEEEESSGGG
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhccCCCEEEEEchhh
Confidence 677999999999 7889888764 5677776544 1110 0111 11111122357999999999
Q ss_pred ccc
Q 040463 94 SIN 96 (192)
Q Consensus 94 l~~ 96 (192)
+ +
T Consensus 103 f-k 104 (195)
T 1w4r_A 103 F-P 104 (195)
T ss_dssp C-T
T ss_pred h-H
Confidence 8 5
No 225
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.21 E-value=0.00024 Score=57.04 Aligned_cols=29 Identities=24% Similarity=0.161 Sum_probs=24.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
-|.|.|++||||||+++.++ .+|.+++..
T Consensus 77 iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 38889999999999999999 578777654
No 226
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.20 E-value=0.0005 Score=56.01 Aligned_cols=27 Identities=7% Similarity=-0.107 Sum_probs=22.0
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHH
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
++...-++++||||+|||+++..+|..
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 343444889999999999999999875
No 227
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.20 E-value=0.00036 Score=53.32 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=27.0
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHhC----CcEEEee
Q 040463 29 AWKRGYLLYSPPRTGKSSLTAAMANYLN----FDVCDLE 63 (192)
Q Consensus 29 ~~~~~ilL~GppGtGKt~l~~~ia~~~~----~~~~~i~ 63 (192)
..+.-|+|.|++|+||||+++.++..++ .+++.++
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 3344588899999999999999999775 4455554
No 228
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.19 E-value=0.00023 Score=54.10 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=24.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC--CcEEE
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLN--FDVCD 61 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~--~~~~~ 61 (192)
-+.|.||+|+||||+++.++..++ ..++.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 477899999999999999999887 54444
No 229
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.18 E-value=0.00019 Score=55.67 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=21.5
Q ss_pred cCCCCccEEEEcCCCCcHHHHHHHHH
Q 040463 27 GRAWKRGYLLYSPPRTGKSSLTAAMA 52 (192)
Q Consensus 27 ~~~~~~~ilL~GppGtGKt~l~~~ia 52 (192)
|++...-+.|.||+|+||||+++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 34444458899999999999999998
No 230
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.17 E-value=0.00068 Score=56.21 Aligned_cols=39 Identities=13% Similarity=0.066 Sum_probs=28.5
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhC---------CcEEEeecCC
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYLN---------FDVCDLELTT 66 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~~---------~~~~~i~~~~ 66 (192)
++...-+.|+||||+|||+|++.++.... -.+++++...
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 33333488999999999999999998762 2446666544
No 231
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.13 E-value=0.0003 Score=53.43 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
.-+.|.||+|+||||+++.++...
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 458899999999999999999865
No 232
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.12 E-value=0.0003 Score=52.74 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
-+.|.||+|+||||+++.++..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 478999999999999999998764
No 233
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=97.12 E-value=0.00033 Score=53.59 Aligned_cols=29 Identities=10% Similarity=0.037 Sum_probs=26.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCD 61 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~ 61 (192)
.|.|.|++|||||++++.+|+.+|.++++
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 57889999999999999999999999875
No 234
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.10 E-value=0.00024 Score=60.26 Aligned_cols=30 Identities=13% Similarity=0.102 Sum_probs=25.2
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCD 61 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~ 61 (192)
.-|+|+|+||+||||+++.+++.++..++.
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 348889999999999999999988765543
No 235
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.10 E-value=0.0003 Score=57.73 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=26.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDLE 63 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~ 63 (192)
-|++.||+|+|||+++..+|+.++..++..+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~iis~D 35 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEVISGD 35 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEEEECC
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccceeecC
Confidence 5778999999999999999999887665544
No 236
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.09 E-value=0.00045 Score=52.36 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
-|+|.||+|+||||+++.+.....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 488999999999999999988764
No 237
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.04 E-value=0.00037 Score=53.56 Aligned_cols=28 Identities=18% Similarity=0.200 Sum_probs=23.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVC 60 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~ 60 (192)
.+++|.||+|+|||+++..+++..+ +++
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~-~iI 62 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH-RLI 62 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC-EEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC-eEE
Confidence 4689999999999999999998875 443
No 238
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.03 E-value=0.00043 Score=53.43 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=21.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.||+|+||||+++.++...
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48899999999999999999876
No 239
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.03 E-value=0.0017 Score=52.96 Aligned_cols=39 Identities=21% Similarity=0.196 Sum_probs=29.2
Q ss_pred cCCCCccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecC
Q 040463 27 GRAWKRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELT 65 (192)
Q Consensus 27 ~~~~~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~ 65 (192)
|+.+..-++|.|+||+|||+++..+|... +.+++.+++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 34444448899999999999999998764 4567777655
No 240
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.00 E-value=0.00084 Score=55.29 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
.-+.|.||+|+||||+++.+|..+
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 347789999999999999999876
No 241
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.00 E-value=0.00057 Score=55.76 Aligned_cols=28 Identities=32% Similarity=0.496 Sum_probs=23.8
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
++++..+.|+||+|+|||||++.++..+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 4444458899999999999999999987
No 242
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.99 E-value=0.00038 Score=60.46 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=20.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.||+|+||||+++.++..+
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHHHh
Confidence 37789999999999999999876
No 243
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.99 E-value=0.00063 Score=53.32 Aligned_cols=30 Identities=13% Similarity=0.246 Sum_probs=26.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
.+-|.||||+||||+++.+++.++.+.+..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 467899999999999999999999887754
No 244
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.99 E-value=0.00057 Score=52.31 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=22.4
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
+.-+.|.||+|+|||||++.++....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34488899999999999999998764
No 245
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.97 E-value=0.00053 Score=52.24 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=22.2
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
..-+.|.||+|+||||+++.++....
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 33477999999999999999998773
No 246
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.97 E-value=0.00054 Score=51.69 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=28.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEeecCCC
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLNFDVCDLELTTL 67 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~~~~ 67 (192)
++++|++|+|||++|+.++.. +.+++++.....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCC
Confidence 688999999999999999988 888888877654
No 247
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.96 E-value=0.0002 Score=54.44 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
|.|.|++|+||||+++.++..++
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999885
No 248
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.96 E-value=0.0018 Score=46.21 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~ 54 (192)
.|++.|++|+|||+|++++...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998864
No 249
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.95 E-value=0.0012 Score=56.42 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=26.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELT 65 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~ 65 (192)
..|+++|++|+||||++..+|..+ |..+..+++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 468899999999999999999876 3455555443
No 250
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.95 E-value=0.00059 Score=58.31 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=26.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELT 65 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~ 65 (192)
.-+++.||+|+||||++..+|..+ +..+..+++.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 347788999999999999999876 5556555544
No 251
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.94 E-value=0.00063 Score=58.26 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=27.8
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCC
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTT 66 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~ 66 (192)
+.-|++.|++|+||||++..+|.++ |..+.-+.+..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3458889999999999999999876 55566555543
No 252
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.93 E-value=0.00046 Score=55.01 Aligned_cols=28 Identities=29% Similarity=0.186 Sum_probs=22.5
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
++...-++|+||+|+||||++..++..+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4444458899999999999999998754
No 253
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.93 E-value=0.00063 Score=57.61 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=26.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLNFDVCDL 62 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~~~~~~i 62 (192)
.-|++.||+|+|||+++..+|..++..++..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~ 33 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINS 33 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEEC
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeec
Confidence 3578899999999999999999998776554
No 254
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.92 E-value=0.00083 Score=53.48 Aligned_cols=32 Identities=25% Similarity=0.329 Sum_probs=24.2
Q ss_pred HHhcCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 24 RNVGRAWKRGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 24 ~~~~~~~~~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
+.+...+...+++.||+|+||||+++.++...
T Consensus 18 ~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 18 LELCHRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp HHGGGCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred HHHhhCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 33333333348899999999999999999865
No 255
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.92 E-value=0.0006 Score=53.14 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=23.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC--CcEEE
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLN--FDVCD 61 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~--~~~~~ 61 (192)
|.|.||+|+||||+++.+++.++ ..++.
T Consensus 29 i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 29 ITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 77889999999999999999986 45543
No 256
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.91 E-value=0.0004 Score=56.67 Aligned_cols=32 Identities=16% Similarity=0.121 Sum_probs=24.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeec
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL---NFDVCDLEL 64 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~ 64 (192)
-+.+.||+|+||||++..+|..+ +..+..+++
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 47789999999999999999876 444544443
No 257
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.88 E-value=0.0035 Score=44.87 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=19.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~ 54 (192)
.|++.|++|+|||++++.+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999764
No 258
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.88 E-value=0.00072 Score=52.90 Aligned_cols=35 Identities=17% Similarity=0.123 Sum_probs=23.5
Q ss_pred HHhcCCCCcc--EEEEcCCCCcHHHHHHHHHHHhCCc
Q 040463 24 RNVGRAWKRG--YLLYSPPRTGKSSLTAAMANYLNFD 58 (192)
Q Consensus 24 ~~~~~~~~~~--ilL~GppGtGKt~l~~~ia~~~~~~ 58 (192)
+.+.+..+.+ +.|.||+|+||||+++.++..+|..
T Consensus 16 ~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 16 ENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp -------CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred cceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 3333444444 6789999999999999999987643
No 259
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.87 E-value=0.00071 Score=54.30 Aligned_cols=29 Identities=21% Similarity=0.111 Sum_probs=23.5
Q ss_pred cCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 27 GRAWKRGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 27 ~~~~~~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
++....-++|.||||+|||++++.++...
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34444458899999999999999998865
No 260
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.86 E-value=0.00073 Score=52.38 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=22.3
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
..-+.|.||+|+|||||++.++....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 33477899999999999999998764
No 261
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.86 E-value=0.0011 Score=59.00 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=18.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
..++.||||||||+++..++..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 57889999999998776666543
No 262
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.86 E-value=0.0021 Score=45.99 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..|++.|++|+|||++++++...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 263
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.85 E-value=0.002 Score=45.83 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~ 54 (192)
.|++.|++|+|||++++.+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 264
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.83 E-value=0.0021 Score=46.07 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~ 54 (192)
.|++.|++|+|||+|++++...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 265
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.83 E-value=0.00095 Score=59.55 Aligned_cols=31 Identities=23% Similarity=0.404 Sum_probs=28.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCcEEEee
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL---NFDVCDLE 63 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~ 63 (192)
.|+|.|.||+||||+++++++.+ +.+++.++
T Consensus 54 lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 54 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 48899999999999999999999 88888774
No 266
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.79 E-value=0.0023 Score=45.96 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=19.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~ 53 (192)
.|++.|++|+|||++++++..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999986
No 267
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.79 E-value=0.0018 Score=46.56 Aligned_cols=23 Identities=22% Similarity=0.131 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
-.|++.|++|+|||++++.+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999874
No 268
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.0017 Score=48.09 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=21.2
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHH
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
...|++.|++|+|||++++++...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999874
No 269
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=96.77 E-value=0.00092 Score=52.04 Aligned_cols=29 Identities=14% Similarity=0.085 Sum_probs=26.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCD 61 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~ 61 (192)
-|.+.|++|||||++++.+|+.+|.+++.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 47788999999999999999999988864
No 270
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.77 E-value=0.0021 Score=47.65 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~ 54 (192)
.|++.|++|+|||+|++.+...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999874
No 271
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.77 E-value=0.0023 Score=45.87 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~ 54 (192)
.|++.|++|+|||++++++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
No 272
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.77 E-value=0.003 Score=46.09 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..|++.|++|+|||+|++.+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 35999999999999999999863
No 273
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.76 E-value=0.00034 Score=56.56 Aligned_cols=36 Identities=8% Similarity=0.146 Sum_probs=24.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC---CcEEEeecCCCC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLN---FDVCDLELTTLR 68 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~---~~~~~i~~~~~~ 68 (192)
-|.|.||+|+||||+++.+++.++ ..+..++...+.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 477899999999999999999876 334445554444
No 274
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.75 E-value=0.00096 Score=50.55 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.||+|+||||+++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999876
No 275
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.75 E-value=0.0013 Score=55.09 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=23.2
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
......+++.||+|+||||++++++..+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4444458899999999999999999875
No 276
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.72 E-value=0.0027 Score=45.57 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=19.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~ 53 (192)
..|++.|++|+|||++++++..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999986
No 277
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.72 E-value=0.00047 Score=53.33 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=14.6
Q ss_pred cEEEEcCCCCcHHHHHHHHH-HHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMA-NYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia-~~~ 55 (192)
-+.|.||+|+||||+++.++ ..+
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 37789999999999999999 765
No 278
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.72 E-value=0.0034 Score=46.73 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=21.5
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHH
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
....|++.|++|+|||+|++.+...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3446999999999999999999864
No 279
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.69 E-value=0.011 Score=45.05 Aligned_cols=33 Identities=12% Similarity=0.141 Sum_probs=26.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeec
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLEL 64 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~ 64 (192)
..|++|+++|.||||+|-++|-.. |..+..+.+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF 64 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQF 64 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 358899999999999998887754 677777644
No 280
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.68 E-value=0.0036 Score=46.62 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=20.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..|++.|++|+|||+|++.+...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35999999999999999999764
No 281
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.68 E-value=0.0015 Score=53.64 Aligned_cols=24 Identities=17% Similarity=0.135 Sum_probs=21.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
-+.|.||+||||||+++.++..++
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 367889999999999999999875
No 282
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.67 E-value=0.0047 Score=45.45 Aligned_cols=23 Identities=17% Similarity=0.275 Sum_probs=20.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
.|++.|++|+|||+|++.+....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 49999999999999999887654
No 283
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.67 E-value=0.0037 Score=46.74 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=20.7
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHH
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
...|++.|++|+|||+|++.+...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 345999999999999999999753
No 284
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.67 E-value=0.0032 Score=45.60 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..|++.|++|+|||++++.+...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999864
No 285
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.64 E-value=0.0015 Score=48.88 Aligned_cols=24 Identities=21% Similarity=0.126 Sum_probs=21.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
.-+.+.|++|+||||+++.+...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 468899999999999999998875
No 286
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.64 E-value=0.0026 Score=46.62 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
-.|++.|++|+|||+|++++...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 287
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.64 E-value=0.0011 Score=47.64 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=18.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~ 53 (192)
.|++.|++|+|||+|++.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999999853
No 288
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.64 E-value=0.0012 Score=48.78 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=21.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
-.+|+||.|+|||+++++++..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 367899999999999999998775
No 289
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.63 E-value=0.0017 Score=53.21 Aligned_cols=33 Identities=30% Similarity=0.374 Sum_probs=25.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELT 65 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~ 65 (192)
.+.+.||+|+||||++..+|..+ +..++.+++.
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 47789999999999999999876 4455555443
No 290
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.62 E-value=0.0021 Score=58.92 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=18.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-.++.||||||||+++..++..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999998776666543
No 291
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.61 E-value=0.0045 Score=52.74 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=28.6
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHh----CCcEEEeecC
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYL----NFDVCDLELT 65 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~----~~~~~~i~~~ 65 (192)
+....-+++.|+||+|||+++..+|... +.+++.++..
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 4444448889999999999998888754 4567777664
No 292
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.61 E-value=0.0043 Score=45.04 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~ 53 (192)
..|++.|++|+|||+|++.+..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 3589999999999999999875
No 293
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.59 E-value=0.003 Score=46.01 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..|++.|++|+|||+|++.+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35999999999999999999864
No 294
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.59 E-value=0.021 Score=50.36 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=26.7
Q ss_pred ceEEEEe-----CCccccccCCCcceeEEEecCCCHHHHHHHH
Q 040463 151 SQLIIKT-----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLA 188 (192)
Q Consensus 151 ~~iiv~t-----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~ 188 (192)
..+|++| +.++..++. -|...|-+...+..+...++
T Consensus 379 IhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~Dsr~IL 419 (574)
T 2iut_A 379 IHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKIDSRTIL 419 (574)
T ss_dssp EEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHHHHHHH
T ss_pred eEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHHHHHhc
Confidence 3466666 357777776 78888889988888877666
No 295
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.58 E-value=0.0013 Score=57.17 Aligned_cols=34 Identities=15% Similarity=0.318 Sum_probs=27.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELT 65 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~ 65 (192)
..|.++|++|+||||++..+|..+ |..+..+++.
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D 138 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICAD 138 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 358899999999999999999876 5666666553
No 296
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.56 E-value=0.003 Score=46.71 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~ 54 (192)
.|++.|++|+|||+|++++...
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999999874
No 297
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.55 E-value=0.0017 Score=53.07 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=21.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
-+.|.||+|+||||+++.++..+.
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhhcc
Confidence 377899999999999999999763
No 298
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.55 E-value=0.0074 Score=56.11 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=18.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~ 53 (192)
-++|.||.|+||||+.+.++.
T Consensus 675 i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHH
Confidence 478999999999999999874
No 299
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.54 E-value=0.0069 Score=50.07 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.|+||+|||||.++++..+
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999754
No 300
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=96.53 E-value=0.0016 Score=50.22 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=27.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEEEeec
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVCDLEL 64 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~~i~~ 64 (192)
.|-|+|..||||||+++.++. +|.++++.+.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 488999999999999999998 8999887654
No 301
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.52 E-value=0.003 Score=45.85 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..|++.|++|+|||+|++++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35999999999999999999875
No 302
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.52 E-value=0.0034 Score=53.67 Aligned_cols=38 Identities=18% Similarity=0.243 Sum_probs=28.4
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHh----CCcEEEeecC
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYL----NFDVCDLELT 65 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~----~~~~~~i~~~ 65 (192)
+....-++|.|+||+|||+++..+|... |.+++.++..
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 4444448889999999999999988754 4567766643
No 303
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.52 E-value=0.003 Score=45.78 Aligned_cols=23 Identities=17% Similarity=0.184 Sum_probs=20.2
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..|++.|++|+|||+|++++...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999853
No 304
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.51 E-value=0.0019 Score=52.55 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=20.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.||+|+||||+++.+|..+
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 47789999999999999999876
No 305
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.51 E-value=0.0018 Score=50.30 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=22.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
-|.+.|++|+||||+++.++++++
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 478899999999999999999984
No 306
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.51 E-value=0.0015 Score=52.98 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=21.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
-+.|.||+|+||||+++.++..++
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 377899999999999999999876
No 307
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.50 E-value=0.0028 Score=55.33 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=21.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
-|+++|.||+||||+++.+++.++
T Consensus 37 lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 37 VIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 488899999999999999999884
No 308
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.49 E-value=0.014 Score=56.23 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=21.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
-+.++||+|+||||+++.+...+.
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSSC
T ss_pred EEEEEecCCCcHHHHHHHhccccc
Confidence 488999999999999999998764
No 309
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.48 E-value=0.0018 Score=49.97 Aligned_cols=30 Identities=27% Similarity=0.186 Sum_probs=24.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC---CcEEEe
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLN---FDVCDL 62 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~---~~~~~i 62 (192)
-|.|.|++|+||||+++.+++.+. .+++..
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 367889999999999999999884 455443
No 310
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.48 E-value=0.0013 Score=51.40 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=20.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.||+|+|||||.+.++...
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 37799999999999999998765
No 311
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.47 E-value=0.0034 Score=46.62 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..|++.|++|+|||+|++.+...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35999999999999999999764
No 312
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.46 E-value=0.0048 Score=45.66 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=20.1
Q ss_pred ccEEEEcCCCCcHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~ 53 (192)
..|++.|++|+|||+|++++..
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 4599999999999999999986
No 313
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.46 E-value=0.00068 Score=53.57 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=21.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
-|.|.|++|+||||+++.+++.++
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 377899999999999999999983
No 314
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.45 E-value=0.0021 Score=47.95 Aligned_cols=31 Identities=13% Similarity=0.195 Sum_probs=24.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCcEEEee
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL---NFDVCDLE 63 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~ 63 (192)
.+.+.|++|+||||++..++..+ +..+..+.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 57899999999999999999876 44554444
No 315
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.44 E-value=0.0022 Score=56.61 Aligned_cols=32 Identities=25% Similarity=0.163 Sum_probs=26.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC----CcEEEeec
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLN----FDVCDLEL 64 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~----~~~~~i~~ 64 (192)
.|+|.|++|+||||+++++++.++ .+++.++.
T Consensus 398 ~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~ 433 (573)
T 1m8p_A 398 TIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG 433 (573)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH
T ss_pred EEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc
Confidence 477899999999999999999986 66666653
No 316
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.44 E-value=0.0037 Score=46.27 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~ 54 (192)
.|++.|++|+|||+|++.+...
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4999999999999999999863
No 317
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.44 E-value=0.0034 Score=45.93 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~ 54 (192)
.|++.|++|+|||+|++.+...
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 318
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.43 E-value=0.0036 Score=46.14 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..|++.|++|+|||+|++++...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999864
No 319
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.42 E-value=0.0033 Score=46.04 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..|++.|++|+|||+|++.+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999864
No 320
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.42 E-value=0.006 Score=44.93 Aligned_cols=23 Identities=9% Similarity=0.216 Sum_probs=20.5
Q ss_pred CccEEEEcCCCCcHHHHHHHHHH
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~ 53 (192)
...|++.|++|+|||++++.+..
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34699999999999999999984
No 321
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.41 E-value=0.0014 Score=51.39 Aligned_cols=23 Identities=26% Similarity=0.186 Sum_probs=20.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.||+|+|||||++.++...
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47799999999999999998865
No 322
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.41 E-value=0.0018 Score=50.88 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
.-+.|.||+|+|||||.+.++...
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 457799999999999999999865
No 323
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.40 E-value=0.005 Score=50.70 Aligned_cols=34 Identities=24% Similarity=0.215 Sum_probs=24.8
Q ss_pred HHHHhcCCCCcc--EEEEcCCCCcHHHHHHHHHHHh
Q 040463 22 FYRNVGRAWKRG--YLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 22 ~~~~~~~~~~~~--ilL~GppGtGKt~l~~~ia~~~ 55 (192)
..+.+......+ +.|.||||+||||+.+.++..+
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 334444433333 7789999999999999999765
No 324
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.40 E-value=0.0034 Score=46.84 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=20.2
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..|++.|++|+|||+|++.+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999998763
No 325
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.40 E-value=0.0019 Score=48.27 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.|++|+|||||++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999998753
No 326
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.39 E-value=0.002 Score=48.25 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~ 54 (192)
.+.+.|++|+|||||++.++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4889999999999999999875
No 327
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.39 E-value=0.0065 Score=44.72 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..+++.|++|+|||+|++.+...
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999998754
No 328
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.39 E-value=0.0013 Score=51.02 Aligned_cols=23 Identities=17% Similarity=0.072 Sum_probs=20.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.||.|+|||||++.++...
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37799999999999999998765
No 329
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.38 E-value=0.0081 Score=49.62 Aligned_cols=38 Identities=21% Similarity=0.135 Sum_probs=28.7
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecC
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELT 65 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~ 65 (192)
+.+..-++|.|+||+|||+++..+|... +.+++.++..
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 3333348889999999999999998864 5677776654
No 330
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.003 Score=57.92 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=16.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~ 53 (192)
-.++.||||||||+++..+..
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~ 397 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVY 397 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478899999999976655544
No 331
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.37 E-value=0.0015 Score=50.15 Aligned_cols=22 Identities=27% Similarity=0.208 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~ 54 (192)
-+.|.||.|+|||||++.++..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4779999999999999999875
No 332
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.37 E-value=0.003 Score=46.80 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
.|++.|++|+|||+|++.+...-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 49999999999999999998754
No 333
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.37 E-value=0.0036 Score=48.41 Aligned_cols=28 Identities=21% Similarity=0.154 Sum_probs=24.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFDVC 60 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~~~ 60 (192)
-|.+.|++|+||||+++.+++.++.++.
T Consensus 7 ~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 7 LILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 4778899999999999999999987543
No 334
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.33 E-value=0.0021 Score=51.30 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=20.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
.+.|.||+|+|||||++.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999865
No 335
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.33 E-value=0.0019 Score=51.40 Aligned_cols=23 Identities=13% Similarity=0.120 Sum_probs=20.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.||.|+|||||++.++...
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37799999999999999998765
No 336
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.32 E-value=0.0028 Score=46.90 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=20.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
..|++.|++|+|||+|++.+....
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 359999999999999999987643
No 337
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.31 E-value=0.0026 Score=45.38 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~ 54 (192)
.+++.|++|+|||++++.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
No 338
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.31 E-value=0.007 Score=45.39 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=19.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~ 54 (192)
.|++.|++|+|||+|++.+...
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4999999999999999999753
No 339
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.31 E-value=0.011 Score=50.86 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=20.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
.++|+||+|+|||+|++.++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 48999999999999999887754
No 340
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.31 E-value=0.0048 Score=45.87 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=19.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~ 53 (192)
.|++.|++|+|||+|++.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 499999999999999999864
No 341
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.30 E-value=0.0023 Score=48.11 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.5
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHH
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..|++|.|++|+|||+++.++...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 358999999999999999999875
No 342
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.30 E-value=0.0046 Score=52.56 Aligned_cols=24 Identities=33% Similarity=0.272 Sum_probs=21.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
.+++.||+|+||||++++++..+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHhhcC
Confidence 377899999999999999999874
No 343
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.30 E-value=0.0079 Score=51.41 Aligned_cols=40 Identities=20% Similarity=0.186 Sum_probs=29.9
Q ss_pred cCCCCccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecCC
Q 040463 27 GRAWKRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELTT 66 (192)
Q Consensus 27 ~~~~~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~~ 66 (192)
|+.+..-+++.|+||+|||+++-.+|... +.+++.++...
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm 235 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 235 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 34444448889999999999998888765 56777776653
No 344
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.30 E-value=0.0019 Score=50.37 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=17.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 040463 34 YLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~ 55 (192)
|.|.|++|+||||+++.+++.+
T Consensus 28 I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 28 ITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp EEEECCC---CHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6778999999999999999987
No 345
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.29 E-value=0.0024 Score=45.84 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
-.|++.|++|+|||++++.+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999874
No 346
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.28 E-value=0.0019 Score=53.82 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 040463 34 YLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~ 55 (192)
+.|.||+||||||+.+.++...
T Consensus 33 ~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCchHHHHHHHHhcCC
Confidence 7799999999999999999865
No 347
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.27 E-value=0.0026 Score=50.74 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~ 54 (192)
-+.|.||.|+|||||++.++..
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3779999999999999999985
No 348
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.27 E-value=0.0055 Score=52.18 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=25.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELT 65 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~ 65 (192)
..+.+.|++|+||||++..+|..+ +..+.-+++.
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 347788999999999999999876 3445555443
No 349
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.26 E-value=0.0029 Score=53.97 Aligned_cols=37 Identities=14% Similarity=0.167 Sum_probs=28.8
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh----CCcEEEeecCCC
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL----NFDVCDLELTTL 67 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~----~~~~~~i~~~~~ 67 (192)
+..|++.|++|+||||++..+|..+ |..+.-+++...
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~ 140 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVY 140 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 3458888999999999999998776 666776666543
No 350
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.26 E-value=0.002 Score=50.60 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.||+|+|||||++.++...
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37799999999999999998765
No 351
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.25 E-value=0.0026 Score=52.77 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=22.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCc
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNFD 58 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~~ 58 (192)
-+.|.||+|+|||||++.++..+...
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 48899999999999999999987543
No 352
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.25 E-value=0.0037 Score=53.52 Aligned_cols=93 Identities=10% Similarity=0.164 Sum_probs=55.4
Q ss_pred HHhcCCCeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEE
Q 040463 77 LIATENKSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIK 156 (192)
Q Consensus 77 ~~~~~~~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~ 156 (192)
+..+...+|+++||+|++.. ...+... +....-++..||..+++...+.++-..+...|+|+
T Consensus 245 i~~ae~~~il~~DEidki~~--~~~~~~~----------------D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI 306 (444)
T 1g41_A 245 IDAVEQNGIVFIDEIDKICK--KGEYSGA----------------DVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFI 306 (444)
T ss_dssp HHHHHHHCEEEEETGGGGSC--CSSCSSS----------------HHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEE
T ss_pred HHHhccCCeeeHHHHHHHhh--ccCCCCC----------------CchHHHHHHHHHHHhcccccccccceecCCcEEEE
Confidence 33433567999999999975 2111100 00111255688888887432210000012235544
Q ss_pred e---------CCccccccCCCcceeEEEecCCCHHHHHHHHH
Q 040463 157 T---------DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLAS 189 (192)
Q Consensus 157 t---------~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~ 189 (192)
+ ..+-|.|+. ||+..|.++.++.++..+|+.
T Consensus 307 ~~gaf~~~~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 307 ASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp EEECCSSCCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred eccccccCChhhcchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 3 224467777 999999999999999999983
No 353
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.24 E-value=0.0022 Score=51.07 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=20.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.||.|+|||||++.++...
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 37799999999999999999865
No 354
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.24 E-value=0.002 Score=49.77 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.||.|+|||||.+.++...
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47799999999999999998865
No 355
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.23 E-value=0.02 Score=49.87 Aligned_cols=36 Identities=14% Similarity=0.276 Sum_probs=26.3
Q ss_pred eEEEEe-----CCccccccCCCcceeEEEecCCCHHHHHHHHH
Q 040463 152 QLIIKT-----DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLAS 189 (192)
Q Consensus 152 ~iiv~t-----~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~ 189 (192)
.++++| +.++..++. -|...|-|...+..+.+.++.
T Consensus 334 ~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 334 HLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp EEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSHHHHHHHHS
T ss_pred EEEEEecCCccccccHHHHh--hcCCeEEEEcCCHHHHHHhcC
Confidence 466777 246666666 788889999888888877764
No 356
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.22 E-value=0.0019 Score=51.11 Aligned_cols=23 Identities=30% Similarity=0.548 Sum_probs=20.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.||.|+|||||.+.++...
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37799999999999999998765
No 357
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.22 E-value=0.0028 Score=46.01 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=19.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~ 53 (192)
.+.+.|++|+|||+|++.++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 488999999999999999986
No 358
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.22 E-value=0.0034 Score=47.47 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
..|++.|++|+|||+++++++...
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999998754
No 359
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.22 E-value=0.0021 Score=51.56 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=20.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.||.|+|||||++.++...
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37799999999999999998765
No 360
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.21 E-value=0.0072 Score=51.62 Aligned_cols=36 Identities=31% Similarity=0.352 Sum_probs=27.9
Q ss_pred HHHHhcCCCCcc--EEEEcCCCCcHHHHHHHHHHHhCCc
Q 040463 22 FYRNVGRAWKRG--YLLYSPPRTGKSSLTAAMANYLNFD 58 (192)
Q Consensus 22 ~~~~~~~~~~~~--ilL~GppGtGKt~l~~~ia~~~~~~ 58 (192)
..+.+ ++..+| +.|.||+|||||||++.++......
T Consensus 147 vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 147 AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp HHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred EEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 34445 555444 7799999999999999999987544
No 361
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.20 E-value=0.0025 Score=50.28 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~ 54 (192)
-+.|.||.|+|||||++.++..
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3779999999999999999985
No 362
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.20 E-value=0.0024 Score=50.75 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=20.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.||+|+|||||++.++...
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 37799999999999999998764
No 363
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.19 E-value=0.0081 Score=51.40 Aligned_cols=21 Identities=24% Similarity=0.215 Sum_probs=17.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~ 53 (192)
-.++.|+||||||+++..++.
T Consensus 163 v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp EEEEEECTTSCHHHHHHHHCC
T ss_pred EEEEEcCCCCCHHHHHHHHhc
Confidence 367889999999999988765
No 364
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.19 E-value=0.0024 Score=47.25 Aligned_cols=21 Identities=14% Similarity=0.343 Sum_probs=19.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~ 53 (192)
-+++.|++|+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999976
No 365
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.19 E-value=0.01 Score=55.28 Aligned_cols=61 Identities=11% Similarity=0.142 Sum_probs=36.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH-----hCCcEE----Ee----------ecCCC-C-C-------hhHHHHHHHhcCCCe
Q 040463 33 GYLLYSPPRTGKSSLTAAMANY-----LNFDVC----DL----------ELTTL-R-D-------NTKLRNVLIATENKS 84 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~-----~~~~~~----~i----------~~~~~-~-~-------~~~l~~~~~~~~~~~ 84 (192)
-++|.||.|+||||+.+.++-. .|..+. .+ ..... . . -.++..++..+..|.
T Consensus 664 i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~~s 743 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDS 743 (934)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHHHHHHCCTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhccCCc
Confidence 3788999999999999998542 232111 11 11000 0 0 123445555567899
Q ss_pred EEEEeCCCc
Q 040463 85 ILAVEDIDC 93 (192)
Q Consensus 85 Il~lDeid~ 93 (192)
++++||.-.
T Consensus 744 LlLLDEp~~ 752 (934)
T 3thx_A 744 LIIIDELGR 752 (934)
T ss_dssp EEEEESCSC
T ss_pred EEEEeCCCC
Confidence 999999766
No 366
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.19 E-value=0.0021 Score=49.98 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=20.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.||.|+|||||.+.++...
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37799999999999999999865
No 367
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.19 E-value=0.0024 Score=51.06 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.||+|+|||||++.++...
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37799999999999999998865
No 368
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.19 E-value=0.0021 Score=50.67 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=20.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.||+|+|||||++.++...
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37799999999999999998865
No 369
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.19 E-value=0.0029 Score=49.61 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=20.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-|.+.|++|+||||+++.+++.+
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47788999999999999999987
No 370
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.18 E-value=0.0071 Score=45.53 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=20.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..|++.|++|+|||+|++.+...
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999864
No 371
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.18 E-value=0.0026 Score=53.45 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=20.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.||+||||||+.+.++...
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 37799999999999999999866
No 372
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.17 E-value=0.0026 Score=53.07 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 040463 34 YLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~ 55 (192)
+.|.||+|||||||.+.++...
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 32 MALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCchHHHHHHHHhcCC
Confidence 7789999999999999999865
No 373
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.17 E-value=0.0016 Score=48.56 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=21.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
.+.|.|++|+||||+++.++..+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 578999999999999999999874
No 374
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.17 E-value=0.0031 Score=45.57 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~ 53 (192)
..|++.|++|+|||+|++.+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 3589999999999999999875
No 375
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.16 E-value=0.0027 Score=52.84 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=20.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.||+|||||||.+.++...
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37789999999999999999865
No 376
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.16 E-value=0.0022 Score=50.25 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.||.|+|||||.+.++...
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37799999999999999998865
No 377
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.15 E-value=0.0016 Score=54.20 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=23.3
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
....++|.||+|+||||++++++....
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 445699999999999999999998763
No 378
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.15 E-value=0.0034 Score=45.52 Aligned_cols=23 Identities=26% Similarity=0.208 Sum_probs=20.2
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..|++.|++|+|||++++.+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999753
No 379
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.15 E-value=0.0027 Score=52.93 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.||+|||||||.+.++...
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 37789999999999999999865
No 380
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.15 E-value=0.0038 Score=46.51 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=19.9
Q ss_pred CccEEEEcCCCCcHHHHHHHHHH
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~ 53 (192)
...|++.|++|+|||+|++.+..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34599999999999999999864
No 381
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.14 E-value=0.0027 Score=50.39 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.||.|+|||||.+.++...
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37799999999999999998865
No 382
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.14 E-value=0.0028 Score=53.10 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=20.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.||+|||||||.+.++...
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 37799999999999999999865
No 383
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.14 E-value=0.0036 Score=45.04 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..|++.|++|+|||++++.+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 384
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.13 E-value=0.0023 Score=51.00 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.||+|+|||||++.++...
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 37799999999999999998755
No 385
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.13 E-value=0.003 Score=55.05 Aligned_cols=25 Identities=12% Similarity=0.107 Sum_probs=23.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNF 57 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~ 57 (192)
.|+|.|.+||||||+++++|+.++.
T Consensus 397 ~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 397 SIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred EEEecccCCCCHHHHHHHHHHHHHH
Confidence 4788899999999999999999975
No 386
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.12 E-value=0.0037 Score=45.43 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..|++.|++|+|||++++.+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35999999999999999998764
No 387
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.11 E-value=0.0027 Score=50.50 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.||.|+|||||.+.++...
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37799999999999999998765
No 388
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.11 E-value=0.0035 Score=53.80 Aligned_cols=25 Identities=24% Similarity=0.471 Sum_probs=22.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
..|+|.|.||+||||+++.++..++
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3588999999999999999999874
No 389
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.10 E-value=0.0093 Score=51.52 Aligned_cols=39 Identities=13% Similarity=-0.134 Sum_probs=29.1
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHh----CCcEEEeecCC
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYL----NFDVCDLELTT 66 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~----~~~~~~i~~~~ 66 (192)
+....-++|.|+||+|||+++..+|... +.+++.++...
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~ 281 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE 281 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 3344448889999999999999988765 45677776543
No 390
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.09 E-value=0.0034 Score=45.05 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~ 54 (192)
.|++.|++|+|||++++.+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999753
No 391
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.09 E-value=0.0025 Score=50.31 Aligned_cols=23 Identities=39% Similarity=0.390 Sum_probs=20.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.||.|+|||||.+.++...
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37799999999999999998765
No 392
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.09 E-value=0.0031 Score=52.81 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.||+|||||||.+.++...
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 37799999999999999999865
No 393
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.08 E-value=0.0024 Score=55.62 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=23.1
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
+.++++.||+|+||||++++++..+.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45699999999999999999998774
No 394
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.08 E-value=0.0037 Score=48.22 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=20.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-|.|.|++|+||||.++.+++++
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37788999999999999999987
No 395
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.07 E-value=0.0082 Score=44.71 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=20.0
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..|++.|++|+|||+|++.+...
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35999999999999999987764
No 396
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.05 E-value=0.0046 Score=44.80 Aligned_cols=23 Identities=35% Similarity=0.264 Sum_probs=20.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-.+++||.|+|||++..|++-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999998766
No 397
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.05 E-value=0.0048 Score=44.36 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=20.3
Q ss_pred CccEEEEcCCCCcHHHHHHHHHH
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~ 53 (192)
...|++.|++|+|||+|++.+..
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34699999999999999999976
No 398
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.05 E-value=0.0027 Score=51.01 Aligned_cols=23 Identities=26% Similarity=0.522 Sum_probs=20.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.||.|+|||||++.++...
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37799999999999999998765
No 399
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.04 E-value=0.0038 Score=44.89 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=18.3
Q ss_pred cEEEEcCCCCcHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMA 52 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia 52 (192)
.|++.|++|+|||+|++.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48899999999999999986
No 400
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.04 E-value=0.0023 Score=53.12 Aligned_cols=23 Identities=17% Similarity=0.444 Sum_probs=20.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.||+|||||||.+.++...
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 37799999999999999999865
No 401
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.03 E-value=0.0038 Score=45.87 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=19.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~ 53 (192)
.+.|.|++|+|||+|++.++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999986
No 402
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.02 E-value=0.0042 Score=45.58 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..|++.|++|+|||+|++++...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999999863
No 403
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.02 E-value=0.0078 Score=49.82 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=25.7
Q ss_pred CCCCcc--EEEEcCCCCcHHHHHHHHHHHhCCcE
Q 040463 28 RAWKRG--YLLYSPPRTGKSSLTAAMANYLNFDV 59 (192)
Q Consensus 28 ~~~~~~--ilL~GppGtGKt~l~~~ia~~~~~~~ 59 (192)
++..+| +.|.||+|+||||+.+.++.......
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~ 99 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADI 99 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCE
Confidence 444344 88999999999999999999886543
No 404
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.02 E-value=0.0073 Score=49.91 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=21.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
.|.|.|+||+||||++..++..+
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999876
No 405
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.02 E-value=0.0049 Score=47.95 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=21.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNF 57 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~ 57 (192)
-|.+.|++|+||||+++.+++.++.
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3677899999999999999998754
No 406
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.01 E-value=0.0029 Score=50.08 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=20.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.||.|+|||||.+.++...
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37799999999999999999865
No 407
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.98 E-value=0.0053 Score=44.52 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=20.2
Q ss_pred CccEEEEcCCCCcHHHHHHHHHH
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~ 53 (192)
...|++.|++|+|||++++.+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34699999999999999999975
No 408
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.96 E-value=0.0027 Score=55.86 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=22.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
..+.|.|++||||||++++++..++
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhc
Confidence 3488999999999999999999885
No 409
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.96 E-value=0.0047 Score=45.55 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..|++.|++|+|||+|++++...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45999999999999999999875
No 410
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.0058 Score=52.56 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=22.9
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
.....-+.|.||.|+|||||++.++...
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3333458899999999999999999865
No 411
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.94 E-value=0.0048 Score=45.48 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~ 54 (192)
.|++.|++|+|||++++.++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 412
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.93 E-value=0.0044 Score=55.05 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=20.2
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
.-+++.|+||||||+++.++...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 458899999999999888877655
No 413
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.93 E-value=0.0035 Score=52.78 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=20.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.||+||||||+.+.++...
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 37799999999999999999754
No 414
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.93 E-value=0.017 Score=55.64 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+-|+||+|+||||+++.+.+..
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCc
Confidence 38899999999999999998865
No 415
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.92 E-value=0.0036 Score=49.86 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=20.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.||.|+|||||.+.++...
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47799999999999999999764
No 416
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.91 E-value=0.0049 Score=46.76 Aligned_cols=25 Identities=12% Similarity=0.115 Sum_probs=22.0
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
..+++.|++|+||||++..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4688999999999999999998763
No 417
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.90 E-value=0.0044 Score=45.42 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~ 54 (192)
-+.|.|++|+|||+|++.++..
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999864
No 418
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.90 E-value=0.0028 Score=52.08 Aligned_cols=26 Identities=8% Similarity=0.347 Sum_probs=22.8
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
...+++.||+|+||||++++++....
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 34689999999999999999998763
No 419
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.89 E-value=0.0049 Score=49.91 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=26.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeecC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL---NFDVCDLELT 65 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~~ 65 (192)
.+.+.|++|+||||++..+|..+ +..+..+++.
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 47788999999999999999876 5566655554
No 420
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.89 E-value=0.0047 Score=45.48 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..|++.|++|+|||+|++.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999874
No 421
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.88 E-value=0.01 Score=45.41 Aligned_cols=29 Identities=21% Similarity=0.367 Sum_probs=23.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh--CCcEEEe
Q 040463 34 YLLYSPPRTGKSSLTAAMANYL--NFDVCDL 62 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~--~~~~~~i 62 (192)
|.|.|+.|+||||.++.+++.+ +.+++..
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 6688999999999999999988 4455443
No 422
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.87 E-value=0.0048 Score=44.75 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=19.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~ 53 (192)
..|++.|++|+|||+|++++..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3599999999999999999864
No 423
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.87 E-value=0.036 Score=46.82 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=20.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
.++|+||+|+|||++++.+++..
T Consensus 176 r~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 176 RGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEecCCCCChhHHHHHHHHHH
Confidence 49999999999999999998864
No 424
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.86 E-value=0.0067 Score=45.43 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=22.8
Q ss_pred HHHhcCCCC-ccEEEEcCCCCcHHHHHHHHHH
Q 040463 23 YRNVGRAWK-RGYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 23 ~~~~~~~~~-~~ilL~GppGtGKt~l~~~ia~ 53 (192)
++.+....+ ..|++.|++|+|||++++.+..
T Consensus 16 l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 16 LQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHTCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHhhccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 344444332 3489999999999999999864
No 425
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.83 E-value=0.0027 Score=52.76 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=20.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.||+|||||||.+.++...
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37799999999999999999865
No 426
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.83 E-value=0.0057 Score=44.41 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=20.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..|++.|++|+|||+|++.+...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35999999999999999999764
No 427
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.82 E-value=0.014 Score=49.83 Aligned_cols=66 Identities=15% Similarity=0.086 Sum_probs=49.3
Q ss_pred CeEEEEeCCCccccccCccccccCCCCCCCCCCCCcccCCCCCcchHHHHHHhhcCccccccccCCCcceEEEEe-----
Q 040463 83 KSILAVEDIDCSINLQGRHSQAKTLNPVNSNAIKPVTNVNQEPKVTLSGLLNFIDGVCRAVEMRGSQYSQLIIKT----- 157 (192)
Q Consensus 83 ~~Il~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~iiv~t----- 157 (192)
|.|+||||+|.+.. ...+.|+..++.-.. . .+|+.|
T Consensus 296 ~~VliIDEa~~l~~------------------------------~a~~aLlk~lEe~~~--------~-~~il~tn~~~~ 336 (456)
T 2c9o_A 296 PGVLFVDEVHMLDI------------------------------ECFTYLHRALESSIA--------P-IVIFASNRGNC 336 (456)
T ss_dssp ECEEEEESGGGCBH------------------------------HHHHHHHHHTTSTTC--------C-EEEEEECCSEE
T ss_pred ceEEEEechhhcCH------------------------------HHHHHHHHHhhccCC--------C-EEEEecCCccc
Confidence 57999999999843 567888888775532 1 233233
Q ss_pred -----------CCccccccCCCcceeEEEecCCCHHHHHHHHHh
Q 040463 158 -----------DLTLNLLLRPGCMDMHIHMSYCTPCGLKMLASN 190 (192)
Q Consensus 158 -----------~~l~~~l~~~~rf~~~i~~~~p~~~~r~~i~~~ 190 (192)
..+++.+++ ||.. +.|++|+.++..+++++
T Consensus 337 ~i~~~~~~~~~~~l~~~i~s--R~~~-~~~~~~~~~e~~~iL~~ 377 (456)
T 2c9o_A 337 VIRGTEDITSPHGIPLDLLD--RVMI-IRTMLYTPQEMKQIIKI 377 (456)
T ss_dssp ECBTTSSCEEETTCCHHHHT--TEEE-EECCCCCHHHHHHHHHH
T ss_pred cccccccccccccCChhHHh--hcce-eeCCCCCHHHHHHHHHH
Confidence 356777999 9977 69999999999999874
No 428
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.81 E-value=0.0058 Score=44.55 Aligned_cols=23 Identities=13% Similarity=0.145 Sum_probs=20.1
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..|++.|++|+|||+|++.+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999863
No 429
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.80 E-value=0.0059 Score=45.06 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~ 54 (192)
.|++.|++|+|||+|++.+...
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4999999999999999999864
No 430
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.80 E-value=0.0023 Score=48.07 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=19.1
Q ss_pred ccEEEEcCCCCcHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~ 53 (192)
..+.|.|++|+|||||+++++.
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3488999999999999998864
No 431
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.80 E-value=0.026 Score=51.74 Aligned_cols=22 Identities=23% Similarity=0.224 Sum_probs=19.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~ 54 (192)
-++|.||.|+||||+.+.++..
T Consensus 609 i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 609 MLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 3778999999999999999864
No 432
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.78 E-value=0.016 Score=44.49 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=18.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~ 53 (192)
-|+|.|.+|+|||+|+..+..
T Consensus 15 KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHHh
Confidence 389999999999999998875
No 433
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.77 E-value=0.0051 Score=51.39 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 040463 34 YLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~ 55 (192)
+.|.||+|+|||||++.++...
T Consensus 57 ~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHhcCC
Confidence 7799999999999999999865
No 434
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.77 E-value=0.0076 Score=45.84 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=21.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
..+++.|++|+|||+++..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 458889999999999999999875
No 435
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.77 E-value=0.0043 Score=50.11 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 040463 34 YLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~ 55 (192)
+.|.||.|+|||||.+.++...
T Consensus 67 ~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 67 LAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7799999999999999998765
No 436
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.76 E-value=0.0063 Score=44.26 Aligned_cols=24 Identities=13% Similarity=0.056 Sum_probs=20.8
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHH
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
...|++.|++|+|||++++.+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999998863
No 437
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.76 E-value=0.0064 Score=45.02 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~ 54 (192)
.|++.|++|+|||+|++.+...
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4999999999999999998764
No 438
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.76 E-value=0.014 Score=44.26 Aligned_cols=31 Identities=23% Similarity=0.152 Sum_probs=25.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEeec
Q 040463 34 YLLYSPPRTGKSSLTAAMANYL---NFDVCDLEL 64 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~ 64 (192)
|.|.|+.|+||||.++.+++++ |.+++....
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tre 36 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 5578999999999999999987 566665443
No 439
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.75 E-value=0.0064 Score=44.99 Aligned_cols=22 Identities=18% Similarity=0.069 Sum_probs=19.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~ 54 (192)
.|++.|++|+|||+|++.+...
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999888764
No 440
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.75 E-value=0.0058 Score=45.45 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=20.1
Q ss_pred ccEEEEcCCCCcHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~ 53 (192)
..|++.|++|+|||++++.+..
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3599999999999999999987
No 441
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.74 E-value=0.005 Score=45.14 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=19.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~ 54 (192)
.|++.|++|+|||++++.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4889999999999999998763
No 442
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.73 E-value=0.0071 Score=48.82 Aligned_cols=31 Identities=19% Similarity=0.201 Sum_probs=23.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCcEEEee
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL---NFDVCDLE 63 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~ 63 (192)
.+.+.|++|+||||++..+|..+ +..+..++
T Consensus 100 ~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 100 LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp EEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 47788999999999999999876 34444443
No 443
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.73 E-value=0.0056 Score=53.28 Aligned_cols=37 Identities=14% Similarity=-0.028 Sum_probs=26.6
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeec
Q 040463 28 RAWKRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLEL 64 (192)
Q Consensus 28 ~~~~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~ 64 (192)
+.....++|.||+|+|||+|++.++... |..++.+..
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ 317 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAY 317 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 3444458899999999999999998764 344444443
No 444
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.72 E-value=0.0068 Score=44.72 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~ 54 (192)
.|++.|++|+|||+|++.+...
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999753
No 445
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.71 E-value=0.0067 Score=44.77 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=20.6
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHH
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
...|++.|++|+|||++++++...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346999999999999999998753
No 446
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.71 E-value=0.016 Score=45.72 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..|++.|++|+|||++++++...
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999863
No 447
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.70 E-value=0.0049 Score=53.63 Aligned_cols=36 Identities=14% Similarity=0.149 Sum_probs=24.4
Q ss_pred CCCccEEEEcCCCCcHHHHHHHH--HHHh--CCcEEEeec
Q 040463 29 AWKRGYLLYSPPRTGKSSLTAAM--ANYL--NFDVCDLEL 64 (192)
Q Consensus 29 ~~~~~ilL~GppGtGKt~l~~~i--a~~~--~~~~~~i~~ 64 (192)
+....++|.||+|||||||++.+ +... +...+.++.
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 33445889999999999999994 3333 334444444
No 448
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.69 E-value=0.007 Score=45.14 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..|++.|++|+|||+|++.+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35999999999999999999864
No 449
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.68 E-value=0.007 Score=44.79 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~ 54 (192)
.|++.|++|+|||+|++.+...
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3899999999999999999863
No 450
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.68 E-value=0.0058 Score=44.57 Aligned_cols=24 Identities=13% Similarity=0.126 Sum_probs=20.3
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHH
Q 040463 30 WKRGYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 30 ~~~~ilL~GppGtGKt~l~~~ia~ 53 (192)
.+..|++.|++|+|||++++.+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345699999999999999988863
No 451
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.68 E-value=0.021 Score=48.19 Aligned_cols=62 Identities=13% Similarity=0.244 Sum_probs=40.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh-----CCcEEEeecCCC--------------------CC--hh---------HHHHHH
Q 040463 34 YLLYSPPRTGKSSLTAAMANYL-----NFDVCDLELTTL--------------------RD--NT---------KLRNVL 77 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~-----~~~~~~i~~~~~--------------------~~--~~---------~l~~~~ 77 (192)
+++.|++|+|||+++..+++.. +..++.+-+..- .. .. .+.+.|
T Consensus 178 ~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGER~~EV~d~~~~~~G~VV~atadep~~~r~~~a~~altiAEyf 257 (427)
T 3l0o_A 178 GMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDIRESTNAIVIAAPFDMPPDKQVKVAELTLEMAKRL 257 (427)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSCCHHHHSSSSSSCCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEeccCcchHHHHHHHhCCeEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888853 334333222110 00 01 223445
Q ss_pred HhcCCCeEEEEeCCCccc
Q 040463 78 IATENKSILAVEDIDCSI 95 (192)
Q Consensus 78 ~~~~~~~Il~lDeid~l~ 95 (192)
....+.+++++|++-..+
T Consensus 258 rd~G~dVLil~DslTR~A 275 (427)
T 3l0o_A 258 VEFNYDVVILLDSLTRLA 275 (427)
T ss_dssp HHTTCEEEEEEECHHHHH
T ss_pred HHcCCCEEEecccchHHH
Confidence 555578999999988875
No 452
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.66 E-value=0.0051 Score=44.76 Aligned_cols=23 Identities=26% Similarity=0.198 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
-.|++.|++|+|||+|++.+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999874
No 453
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.66 E-value=0.0066 Score=44.25 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=19.8
Q ss_pred ccEEEEcCCCCcHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~ 53 (192)
..|++.|++|+|||+|++.+..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 3599999999999999999985
No 454
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.65 E-value=0.0068 Score=46.00 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=18.7
Q ss_pred cEEEEcCCCCcHHHHHHH-HHHH
Q 040463 33 GYLLYSPPRTGKSSLTAA-MANY 54 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~-ia~~ 54 (192)
.|++.|++|+|||+|++. +...
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 499999999999999998 4443
No 455
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.65 E-value=0.008 Score=45.74 Aligned_cols=25 Identities=32% Similarity=0.272 Sum_probs=21.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNF 57 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~ 57 (192)
-.+|+||.|+|||++..++.-.++-
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 3678999999999999999987754
No 456
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.64 E-value=0.0073 Score=44.72 Aligned_cols=23 Identities=17% Similarity=0.158 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
-.|++.|++|+|||+|++.+...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35999999999999999999874
No 457
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.64 E-value=0.014 Score=45.41 Aligned_cols=32 Identities=28% Similarity=0.517 Sum_probs=25.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh--CCcEEEeec
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL--NFDVCDLEL 64 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~--~~~~~~i~~ 64 (192)
.+++.|.+|+||||++..++..+ +..+..++.
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~ 49 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL 49 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 37778999999999999999876 555555553
No 458
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.60 E-value=0.004 Score=50.71 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
-+.|.||+|+|||||++.++..+
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 37899999999999999998865
No 459
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.59 E-value=0.0072 Score=45.16 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..|++.|++|+|||+|++++...
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 35999999999999999999874
No 460
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.58 E-value=0.0072 Score=45.23 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..|++.|++|+|||+|++.+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999763
No 461
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.58 E-value=0.0076 Score=44.25 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..|++.|++|+|||++++.+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999998764
No 462
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.58 E-value=0.01 Score=50.37 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~ 54 (192)
.+.|.||+|+||||+.++++..
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4778999999999999999974
No 463
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.57 E-value=0.008 Score=45.02 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..|++.|++|+|||+|++++...
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999853
No 464
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.56 E-value=0.0066 Score=48.04 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..|.|.|+||+||||+++++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999764
No 465
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=95.56 E-value=0.0082 Score=47.22 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=23.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcE
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLNFDV 59 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~~~~ 59 (192)
|.|+|++||||||+++.++..+|.++
T Consensus 4 i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 4 IFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 67899999999999999999888665
No 466
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.54 E-value=0.0076 Score=45.55 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=20.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~ 54 (192)
.|++.|++|+|||+|++.+...
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999999874
No 467
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.53 E-value=0.0039 Score=48.21 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 040463 34 YLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~ 54 (192)
+.|.|+.|+||||+++.++..
T Consensus 23 i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEECSTTSCHHHHHHTTGGG
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 678899999999999999987
No 468
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=95.52 E-value=0.016 Score=50.37 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=19.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~ 54 (192)
.|+|.|.||+|||+|++++...
T Consensus 43 kV~lvG~~~vGKSSLl~~l~~~ 64 (535)
T 3dpu_A 43 KVHLIGDGMAGKTSLLKQLIGE 64 (535)
T ss_dssp EEEEESSSCSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999998754
No 469
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.51 E-value=0.008 Score=46.45 Aligned_cols=23 Identities=17% Similarity=0.171 Sum_probs=20.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..|+|.|++|+|||++++++...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 35999999999999999999863
No 470
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.50 E-value=0.0079 Score=45.35 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=20.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..|++.|++|+|||+|++.+...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999998864
No 471
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=95.50 E-value=0.015 Score=48.32 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=19.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~ 54 (192)
.+.|.|+||+|||||.++++..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3789999999999999999853
No 472
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.48 E-value=0.0079 Score=44.08 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=20.4
Q ss_pred CccEEEEcCCCCcHHHHHHHHHH
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~ 53 (192)
...|++.|++|+|||++++.+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 34699999999999999999875
No 473
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.48 E-value=0.0079 Score=50.08 Aligned_cols=24 Identities=29% Similarity=0.266 Sum_probs=20.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
.+.|.||+|+|||||+++++....
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 478999999999999999996554
No 474
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.46 E-value=0.0089 Score=50.91 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 040463 34 YLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~ 54 (192)
+.|.||+|+|||||++.++..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 678999999999999999864
No 475
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.44 E-value=0.023 Score=47.33 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=26.1
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeec
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANYL---NFDVCDLEL 64 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~~---~~~~~~i~~ 64 (192)
..++++.||+|+|||++++.++... +..++.++.
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 3469999999999999999988754 455555543
No 476
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.43 E-value=0.005 Score=45.01 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=9.7
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..|++.|++|+|||+|++.+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35999999999999999988753
No 477
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.40 E-value=0.0099 Score=49.41 Aligned_cols=22 Identities=36% Similarity=0.401 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 040463 34 YLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~ 55 (192)
.+|+||.|+||||+..+++-.+
T Consensus 26 ~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6689999999999999998654
No 478
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.40 E-value=0.01 Score=44.27 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=19.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~ 53 (192)
-|++.|+||+|||+|++.+..
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999885
No 479
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.38 E-value=0.0096 Score=44.01 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~ 54 (192)
.|++.|++|+|||++++.+...
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 480
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.38 E-value=0.0095 Score=44.76 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=20.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..|++.|++|+|||+|++.+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 35999999999999999999863
No 481
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.38 E-value=0.024 Score=46.54 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYL 55 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~ 55 (192)
.+.+.|+||+||||+++.++..+
T Consensus 58 ~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 58 RLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 47789999999999999998765
No 482
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.37 E-value=0.009 Score=48.33 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
.+.|.||+|+|||||+++++ ...
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hhh
Confidence 47789999999999999999 653
No 483
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.34 E-value=0.0091 Score=44.67 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~ 53 (192)
..|++.|++|+|||+|++.+..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4599999999999999999864
No 484
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.34 E-value=0.01 Score=44.15 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~ 53 (192)
..|++.|++|+|||+|++.+..
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3599999999999999999874
No 485
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.33 E-value=0.0072 Score=48.85 Aligned_cols=25 Identities=28% Similarity=0.182 Sum_probs=21.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCC
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLNF 57 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~~ 57 (192)
-+.|.||+|+||||++++++.....
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred eEEEECCCCCcHHHHHHHhcccccc
Confidence 4778999999999999999876543
No 486
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.31 E-value=0.01 Score=44.67 Aligned_cols=21 Identities=14% Similarity=0.226 Sum_probs=19.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~ 53 (192)
.|++.|++|+|||+|++.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 599999999999999999875
No 487
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.30 E-value=0.01 Score=52.03 Aligned_cols=31 Identities=29% Similarity=0.341 Sum_probs=25.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC---CcEEEee
Q 040463 33 GYLLYSPPRTGKSSLTAAMANYLN---FDVCDLE 63 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~~~---~~~~~i~ 63 (192)
.|+|.|++|+||||+++.+++.++ .++..++
T Consensus 374 ~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld 407 (546)
T 2gks_A 374 CVWLTGLPCAGKSTIAEILATMLQARGRKVTLLD 407 (546)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEEC
Confidence 478899999999999999999874 3455444
No 488
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.30 E-value=0.072 Score=50.12 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=18.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~ 53 (192)
..++|.||.|+||||+.+.++-
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iGl 811 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAGL 811 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 3588999999999999999843
No 489
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.30 E-value=0.028 Score=44.15 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=21.0
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHH
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
...|++.|.+|+|||++++++...
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 346999999999999999999864
No 490
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.29 E-value=0.008 Score=44.94 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=18.5
Q ss_pred cEEEEcCCCCcHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMA 52 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia 52 (192)
-|++.|++|+|||+|++.++
T Consensus 25 ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999985
No 491
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.28 E-value=0.01 Score=44.31 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~~ 54 (192)
.|++.|++|+|||+|++.+...
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4999999999999999999873
No 492
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.27 E-value=0.014 Score=47.67 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=21.5
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHH
Q 040463 31 KRGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 31 ~~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..+++|.|++|+|||+++.++...
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 357999999999999999999875
No 493
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.26 E-value=0.0084 Score=43.94 Aligned_cols=23 Identities=9% Similarity=0.179 Sum_probs=20.2
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..|++.|++|+|||+|++.+...
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999999853
No 494
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.24 E-value=0.011 Score=43.73 Aligned_cols=21 Identities=10% Similarity=0.256 Sum_probs=19.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~ 53 (192)
.|++.|++|+|||+|++.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 599999999999999999864
No 495
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.20 E-value=0.011 Score=44.81 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=19.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~ 53 (192)
..|++.|++|+|||+|++.+..
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 3599999999999999999875
No 496
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.19 E-value=0.012 Score=44.27 Aligned_cols=23 Identities=9% Similarity=0.080 Sum_probs=20.2
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..|++.|++|+|||+|++.+...
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999999863
No 497
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.19 E-value=0.013 Score=44.61 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..|++.|++|+|||+|++.+...
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35999999999999999999863
No 498
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.18 E-value=0.0086 Score=48.43 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=18.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHH
Q 040463 33 GYLLYSPPRTGKSSLTAAMAN 53 (192)
Q Consensus 33 ~ilL~GppGtGKt~l~~~ia~ 53 (192)
.|.|.||+|+|||||++.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 479999999999999999764
No 499
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.16 E-value=0.012 Score=44.20 Aligned_cols=23 Identities=13% Similarity=0.145 Sum_probs=20.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q 040463 32 RGYLLYSPPRTGKSSLTAAMANY 54 (192)
Q Consensus 32 ~~ilL~GppGtGKt~l~~~ia~~ 54 (192)
..|++.|++|+|||++++.+...
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999998863
No 500
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.15 E-value=0.0041 Score=48.48 Aligned_cols=23 Identities=30% Similarity=0.205 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q 040463 34 YLLYSPPRTGKSSLTAAMANYLN 56 (192)
Q Consensus 34 ilL~GppGtGKt~l~~~ia~~~~ 56 (192)
+.|.||+|+||||++++++..+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 45789999999999999999874
Done!