Query 040465
Match_columns 594
No_of_seqs 283 out of 1898
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 13:55:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040465.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040465hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1o82a_ a.64.2.1 (A:) Bacterio 6.7 1.1E+02 0.0077 21.2 1.8 15 137-151 2-16 (70)
2 d2r6gf1 e.70.1.1 (F:13-260) Ma 5.1 5.9E+02 0.043 22.2 6.8 15 569-583 59-73 (248)
3 d2oara1 f.16.1.1 (A:10-118) Ga 3.7 7.3E+02 0.053 18.7 5.5 26 174-199 6-37 (109)
4 d1qk6a_ g.3.6.2 (A:) Huwentoxi 3.6 1.2E+02 0.0089 18.1 0.3 8 358-365 24-31 (33)
5 d1uaza_ f.13.1.1 (A:) Archaerh 3.4 5.6E+02 0.041 22.0 5.1 30 398-427 17-46 (236)
6 d1rgoa2 g.66.1.1 (A:187-220) B 2.6 2.5E+02 0.018 17.0 1.0 20 60-79 10-31 (34)
7 d1ag7a_ g.3.6.1 (A:) Conotoxin 2.6 3.3E+02 0.024 15.9 1.5 13 52-64 4-17 (34)
8 d1l0oc_ a.4.13.2 (C:) SigmaF { 2.5 2.6E+02 0.019 18.6 1.1 15 131-145 32-46 (57)
9 d2e74e1 f.23.24.1 (E:1-32) Pet 2.5 3.9E+02 0.028 15.4 1.7 7 576-582 8-14 (32)
10 d1jb0j_ f.23.18.1 (J:) Subunit 2.3 6.7E+02 0.049 15.7 2.9 17 436-452 13-29 (41)
No 1
>d1o82a_ a.64.2.1 (A:) Bacteriocin AS-48 {Enterococcus faecalis [TaxId: 1351]}
Probab=6.67 E-value=1.1e+02 Score=21.23 Aligned_cols=15 Identities=27% Similarity=0.654 Sum_probs=12.8
Q ss_pred HHHhCCCcchhhHHH
Q 040465 137 SRILKLPPTIAGVTL 151 (594)
Q Consensus 137 s~~l~ls~~vaGvTl 151 (594)
++.+|+|.+++|+++
T Consensus 2 akefgipa~ia~~vl 16 (70)
T d1o82a_ 2 AKEFGIPAAVAGTVL 16 (70)
T ss_dssp HHHHCCCHHHHHHHH
T ss_pred chhhCCcHHHHHHHH
Confidence 678899999999765
No 2
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=5.13 E-value=5.9e+02 Score=22.20 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHH
Q 040465 569 GIGLLAIYSCFLCVR 583 (594)
Q Consensus 569 G~~Ll~~Y~~fl~~~ 583 (594)
|++++.+|.+|-++.
T Consensus 59 G~~~l~~Fvi~Pi~y 73 (248)
T d2r6gf1 59 GMAGMGLFVLFPLVC 73 (248)
T ss_dssp HHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHhhee
Confidence 888888888876543
No 3
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=3.72 E-value=7.3e+02 Score=18.69 Aligned_cols=26 Identities=35% Similarity=0.611 Sum_probs=17.1
Q ss_pred CccchhhhhhhHH------HHHHHHHHHHhhh
Q 040465 174 GDVGLNSVLGGAF------FVSSIVVGVISIL 199 (594)
Q Consensus 174 ~~la~g~iiGs~i------f~~~vv~G~~~l~ 199 (594)
-|+|+|-++|+++ ++--++.+++..+
T Consensus 6 idLAVgvIiG~AF~~iV~slV~diimPlIg~i 37 (109)
T d2oara1 6 VDLAVAVVIGTAFTALVTKFTDSIITPLINRI 37 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHhhc
Confidence 4889999999887 2333455555554
No 4
>d1qk6a_ g.3.6.2 (A:) Huwentoxin-I {Chinese bird spider (Selenocosmia huwena) [TaxId: 29017]}
Probab=3.57 E-value=1.2e+02 Score=18.08 Aligned_cols=8 Identities=38% Similarity=0.804 Sum_probs=5.2
Q ss_pred CCCccchh
Q 040465 358 SEDKWSKT 365 (594)
Q Consensus 358 ~~~~w~k~ 365 (594)
++++|+|+
T Consensus 24 ~k~kw~kw 31 (33)
T d1qk6a_ 24 DKHKWCKW 31 (33)
T ss_dssp SSSCSEEE
T ss_pred CCcceeec
Confidence 46677765
No 5
>d1uaza_ f.13.1.1 (A:) Archaerhodopsin-1 {Archaeon Halobacterium sp. [TaxId: 2243]}
Probab=3.40 E-value=5.6e+02 Score=21.98 Aligned_cols=30 Identities=13% Similarity=0.263 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCCccc
Q 040465 398 SYLGAAFVGIILGNLAFLSTKTCSPPNKCL 427 (594)
Q Consensus 398 ~~~~~~~~~~~l~i~~~~~t~~~~pP~~~~ 427 (594)
.|++...++...+.+.|+..+.+.+|++++
T Consensus 17 ~wl~~~~~~m~~~tv~f~~~~~~~~~~~~r 46 (236)
T d1uaza_ 17 LWLGIGTLLMLIGTFYFIVKGWGVTDKEAR 46 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCSSHH
T ss_pred ehHHHHHHHHHHHHHHHHHHHccCCCCcce
Confidence 444444444444544455555554444433
No 6
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.60 E-value=2.5e+02 Score=17.02 Aligned_cols=20 Identities=25% Similarity=0.740 Sum_probs=11.4
Q ss_pred Cccccccc--cccccccccccc
Q 040465 60 GCAGLHDY--SDYKSRCKYVTT 79 (594)
Q Consensus 60 ~C~~~~~~--~~~~~rC~~V~~ 79 (594)
-|...... =+|.++|.|+-.
T Consensus 10 lC~~f~~~g~C~yG~~C~FaHg 31 (34)
T d1rgoa2 10 LCRTFHTIGFCPYGPRCHFIHN 31 (34)
T ss_dssp BCHHHHHHSCCTTGGGCSSBCC
T ss_pred hccccCCCCcCCCCCcccCcCC
Confidence 46655321 146788888653
No 7
>d1ag7a_ g.3.6.1 (A:) Conotoxin {Synthetic, based on Conus geographus, GS}
Probab=2.57 E-value=3.3e+02 Score=15.93 Aligned_cols=13 Identities=38% Similarity=0.649 Sum_probs=5.6
Q ss_pred ccCCC-CCCCcccc
Q 040465 52 VRGNN-IGDGCAGL 64 (594)
Q Consensus 52 ~~~~~-~~~~C~~~ 64 (594)
+||.| +.+-|..+
T Consensus 4 grgsrcppqccmgl 17 (34)
T d1ag7a_ 4 GRGSRCPPQCCMGL 17 (34)
T ss_dssp CTTSCSSSCBCTTE
T ss_pred CCCCCCChhhceee
Confidence 45555 23334444
No 8
>d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId: 1422]}
Probab=2.51 E-value=2.6e+02 Score=18.63 Aligned_cols=15 Identities=13% Similarity=0.419 Sum_probs=10.5
Q ss_pred hhHHHHHHHhCCCcc
Q 040465 131 SSLESLSRILKLPPT 145 (594)
Q Consensus 131 ~~l~~is~~l~ls~~ 145 (594)
|..+.||+.+|+|+.
T Consensus 32 PT~~EiA~~l~~~~e 46 (57)
T d1l0oc_ 32 PTVTEIADHLGISPE 46 (57)
T ss_dssp CBHHHHHHHHTSCHH
T ss_pred CCHHHHHHHHCcCHH
Confidence 667777777777653
No 9
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.47 E-value=3.9e+02 Score=15.40 Aligned_cols=7 Identities=29% Similarity=0.861 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 040465 576 YSCFLCV 582 (594)
Q Consensus 576 Y~~fl~~ 582 (594)
|++|+.+
T Consensus 8 yivfial 14 (32)
T d2e74e1 8 YIVFIAL 14 (32)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 10
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=2.35 E-value=6.7e+02 Score=15.68 Aligned_cols=17 Identities=24% Similarity=0.602 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 040465 436 LMSVTWTYVTAEELVSL 452 (594)
Q Consensus 436 ~~Sv~wI~~~A~~lv~~ 452 (594)
+.+.+|....|..+++.
T Consensus 13 Vla~~w~~~tAG~lIEi 29 (41)
T d1jb0j_ 13 VLAAIWMTITAGILIEF 29 (41)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45677888888877764
Done!