BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040467
(387 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 116/412 (28%), Positives = 180/412 (43%), Gaps = 62/412 (15%)
Query: 4 RKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFV----NTPSNLKK-LKSSLPQN-S 57
+ ++ + P GH IP + A L + + T+TFV PS ++ + SLP + S
Sbjct: 5 KTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSSIS 64
Query: 58 SIHLREIPFDGIAHDLPPCTENSDSLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHK 117
S+ L PP S + + P RK+ + + + G
Sbjct: 65 SVFL------------PPVDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFV--EGGRL 110
Query: 118 PVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSLWLNLPHRD----------S 167
P ++ D+F + ++A E+ + +F A S +L+LP D +
Sbjct: 111 PTALVVDLFGTDAFDVAVEFHVPPYIFYPTT----ANVLSFFLHLPKLDETVSCEFRELT 166
Query: 168 DEFLLPD-FPEASRIHVTQMTKFLRLA-DGSDSLSVFFQKVLPQWMNADGILFNTVEELD 225
+ +LP P A + FL A D D + ++ A+GIL NT EL+
Sbjct: 167 EPLMLPGCVPVAGK-------DFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELE 219
Query: 226 KIGLMYFSRK-LGRP-VWPVGSLLLSTGSRAGAGKEYGISTEL--CKNWLDTKPCNSVIY 281
+ L +P V+PVG L+ GK+ TE C WLD +P SV+Y
Sbjct: 220 PNAIKALQEPGLDKPPVYPVGPLV-------NIGKQEAKQTEESECLKWLDNQPLGSVLY 272
Query: 282 VSFGSQNTIXXXXXXXXXXXXXXCGKNFIWVVKPPLG------FDMNSEFRANEWLPEGF 335
VSFGS T+ + F+WV++ P G FD +S+ +LP GF
Sbjct: 273 VSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGF 332
Query: 336 EERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHRVPIIG 387
ER K +G V+ WAPQ ++L+H S FL+HCGWNS LE++ +P+I
Sbjct: 333 LERTKK--RGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIA 382
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 109/407 (26%), Positives = 176/407 (43%), Gaps = 38/407 (9%)
Query: 2 AQRKENIVMFPLMAQGHTIPFLALA--LHLENTNRYTITFVNTPSNLKKLKSSLPQNSSI 59
A RK ++VM P QGH P LA LHL + ITFVNT N K+L S +
Sbjct: 5 ANRKPHVVMIPYPVQGHINPLFKLAKLLHLRG---FHITFVNTEYNHKRLLKSRGPKAFD 61
Query: 60 HLREIPFDGIAHDLPPCTENSDSLPFHLFPNFFESTL-SFKPHFRKLINGLIDEQNGHKP 118
+ F+ I L P + D P +S +F + +L+ L N
Sbjct: 62 GFTDFNFESIPDGLTPMEGDGDV--SQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPV 119
Query: 119 VCIIADMFFAWSAEIAQEYGIFNALFVGGGSFG------FACFYSLWLNLPHRDSD---- 168
C+++D +++ + A+E+ + N L+ + F F + +P +D
Sbjct: 120 TCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGI-IPFKDESYLTN 178
Query: 169 ---EFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELD 225
E + P + + F+R + +D + FF +V + IL NT EL+
Sbjct: 179 GCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELE 238
Query: 226 KIGLMYFSRKLGR--PVWPVGSLLLSTGS----RAGAGKEYGISTELCKNWLDTKPCNSV 279
+ S + P+ P+ SLL T + + TE C +WL++K SV
Sbjct: 239 SDVINALSSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTE-CLDWLESKEPGSV 297
Query: 280 IYVSFGSQNTIXXXXXXXXXXXXXXCGKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERI 339
+YV+FGS + C K+F+W+++P L + F + F I
Sbjct: 298 VYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSE------FTNEI 351
Query: 340 KDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHRVPII 386
D G ++ W PQ ++L+H SI FL+HCGWNS E++ VP++
Sbjct: 352 ADRG---LIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPML 395
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 108/402 (26%), Positives = 173/402 (43%), Gaps = 54/402 (13%)
Query: 4 RKENIVMFPLMAQGHTIPFLALALHLENTNR------YTITFVNTPSNLKKLKSSLPQNS 57
+ ++ P GH L A L N ++ + I F P +KS L
Sbjct: 8 KNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQP 67
Query: 58 SIHLREIPFDGIAHDLPPCTENSDSLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHK 117
I L ++P PP E S F++ F ES + PH + I ++ +K
Sbjct: 68 QIQLIDLP-----EVEPPPQELLKSPEFYIL-TFLESLI---PHVKATIKTIL----SNK 114
Query: 118 PVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSLWLNLPHRDSDEFLLPDFPE 177
V ++ D F ++ E+GI + LF+ F SL L+L +R +E F +
Sbjct: 115 VVGLVLDFFCVSMIDVGNEFGIPSYLFLTSN----VGFLSLMLSLKNRQIEEV----FDD 166
Query: 178 ASRIH-------VTQMTKFLRLADG---SDSLSVFFQKVLPQWMNADGILFNTVEELDK- 226
+ R H ++ L D D + + K+ ++ + GI+ NT +L++
Sbjct: 167 SDRDHQLLNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQS 226
Query: 227 -IGLMYFSRKLGRPVWPVGSLLLSTGSRAGAGKEYGISTELCKNWLDTKPCNSVIYVSFG 285
I +Y + P++ VG LL G K +L WLD +P SV+++ FG
Sbjct: 227 SIDALYDHDEKIPPIYAVGPLLDLKGQPNP--KLDQAQHDLILKWLDEQPDKSVVFLCFG 284
Query: 286 SQN-TIXXXXXXXXXXXXXXCGKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQ 344
S + G F+W S + PEGF E ++ G+
Sbjct: 285 SMGVSFGPSQIREIALGLKHSGVRFLW-----------SNSAEKKVFPEGFLEWMELEGK 333
Query: 345 GLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHRVPII 386
G++ WAPQVE+L+HK+I F+SHCGWNS+LE++ VPI+
Sbjct: 334 GMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPIL 374
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 108/402 (26%), Positives = 173/402 (43%), Gaps = 54/402 (13%)
Query: 4 RKENIVMFPLMAQGHTIPFLALALHLENTNR------YTITFVNTPSNLKKLKSSLPQNS 57
+ ++ P GH L A L N ++ + I F P +KS L
Sbjct: 8 KNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQP 67
Query: 58 SIHLREIPFDGIAHDLPPCTENSDSLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHK 117
I L ++P PP E S F++ F ES + PH + I ++ +K
Sbjct: 68 QIQLIDLP-----EVEPPPQELLKSPEFYIL-TFLESLI---PHVKATIKTIL----SNK 114
Query: 118 PVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSLWLNLPHRDSDEFLLPDFPE 177
V ++ D F ++ E+GI + LF+ F SL L+L +R +E F +
Sbjct: 115 VVGLVLDFFCVSMIDVGNEFGIPSYLFLTSN----VGFLSLMLSLKNRQIEEV----FDD 166
Query: 178 ASRIH-------VTQMTKFLRLADG---SDSLSVFFQKVLPQWMNADGILFNTVEELDK- 226
+ R H ++ L D D + + K+ ++ + GI+ NT +L++
Sbjct: 167 SDRDHQLLNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQS 226
Query: 227 -IGLMYFSRKLGRPVWPVGSLLLSTGSRAGAGKEYGISTELCKNWLDTKPCNSVIYVSFG 285
I +Y + P++ VG LL G K +L WLD +P SV+++ FG
Sbjct: 227 SIDALYDHDEKIPPIYAVGPLLDLKGQPNP--KLDQAQHDLILKWLDEQPDKSVVFLCFG 284
Query: 286 SQN-TIXXXXXXXXXXXXXXCGKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQ 344
S + G F+W S + PEGF E ++ G+
Sbjct: 285 SMGVSFGPSQIREIALGLKHSGVRFLW-----------SNSAEKKVFPEGFLEWMELEGK 333
Query: 345 GLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHRVPII 386
G++ WAPQVE+L+HK+I F+SHCGWNS+LE++ VPI+
Sbjct: 334 GMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPIL 374
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 129/299 (43%), Gaps = 36/299 (12%)
Query: 97 SFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQE-YGIFNALFVGGGSFGFACF 155
+ + +F+ +I+ + E G C++ D FF + A++A+E + + L+ G
Sbjct: 98 AMQENFKHVIDEAVAE-TGKNITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHV 156
Query: 156 YSLWLNLP------HRDSDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQ 209
Y+ + H +LP FPE + + + D + K+ +
Sbjct: 157 YTDLIREKTGSKEVHDVKSIDVLPGFPELKASDLPEGV----IKDIDVPFATMLHKMGLE 212
Query: 210 WMNADGILFNTVEELDKIGLMYFSRKLGRPVWPVGSLLLSTGSRAGAGKEYGISTELCKN 269
A+ + N+ + + + K + + VG L+T R E+G C
Sbjct: 213 LPRANAVAINSFATIHPLIENELNSKF-KLLLNVGPFNLTTPQRK-VSDEHG-----CLE 265
Query: 270 WLDTKPCNSVIYVSFGSQNTIXXXXXXXXXXXXXXCGKNFIWVVKPPLGFDMNSEFRAN- 328
WLD +SV+Y+SFGS T CG FIW FR +
Sbjct: 266 WLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIW------------SFRGDP 313
Query: 329 -EWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHRVPII 386
E LP+GF ER K G+ + WAPQVEIL H S+ FL+H GWNSVLE + VP+I
Sbjct: 314 KEKLPKGFLERTKTKGK---IVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMI 369
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 121/281 (43%), Gaps = 28/281 (9%)
Query: 113 QNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFY-------SLWLNLPHR 165
+ G C++AD F ++A++A E G+ F G + + ++
Sbjct: 108 ETGRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQG 167
Query: 166 DSDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELD 225
DE LL P S++ + + + + + S ++ A + N+ EELD
Sbjct: 168 REDE-LLNFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELD 226
Query: 226 KIGLMYFSRKLGRPVWPVGSLLLSTGSRAGAGKEYGISTELCKNWLDTKPCNSVIYVSFG 285
KL + +G L T +T C WL + SV+Y+SFG
Sbjct: 227 DSLTNDLKSKL-KTYLNIGPFNLITPPPVVP------NTTGCLQWLKERKPTSVVYISFG 279
Query: 286 SQNTIXXXXXXXXXXXXXXCGKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQG 345
+ T FIW ++ +A LPEGF E+ + G G
Sbjct: 280 TVTTPPPAEVVALSEALEASRVPFIWSLRD----------KARVHLPEGFLEKTR--GYG 327
Query: 346 LVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHRVPII 386
+VV WAPQ E+L+H+++ AF++HCGWNS+ E+++ VP+I
Sbjct: 328 MVV-PWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLI 367
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 350 KWAPQVEILSHKSISAFLSHCGWNSVLEALSHRVPIIG 387
KW PQ ++L H AF++H G N + EA+ H +P +G
Sbjct: 74 KWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVG 111
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 348 VQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHRVPIIG 387
V +W PQ++IL+ S AF++H G S +EALS+ VP++
Sbjct: 309 VHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVA 346
>pdb|2IND|B Chain B, Mn(Ii) Reconstituted TolueneO-Xylene Monooxygenase
Hydroxylase X-Ray Crystal Structure
Length = 323
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 326 RANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHC--GWNSVLEALS 380
R W + ++ G V+QKW + E L+ K+I A+ S G N+++EA S
Sbjct: 256 RHRRWSSALVKMALEKEGNREVLQKWVAKWEPLADKAIEAYCSALPDGENAIVEAKS 312
>pdb|2INC|B Chain B, Native TolueneO-Xylene Monooxygenase Hydroxylase X-Ray
Crystal Structure
Length = 322
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 326 RANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHC--GWNSVLEALS 380
R W + ++ G V+QKW + E L+ K+I A+ S G N+++EA S
Sbjct: 256 RHRRWSSALVKMALEKEGNREVLQKWVAKWEPLADKAIEAYCSALPDGENAIVEAKS 312
>pdb|1T0Q|B Chain B, Structure Of The Toluene/o-xylene Monooxygenase
Hydroxylase
pdb|1T0R|B Chain B, Crystal Structure Of The TolueneO-Xylene Monooxygenase
Hydroxuylase From Pseudomonas Stutzeri-Azide Bound
pdb|1T0S|B Chain B, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
With 4- Bromophenol Bound
pdb|2RDB|B Chain B, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase I100w Mutant
pdb|3N1X|B Chain B, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase T201c Mutant
pdb|3N1Y|B Chain B, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase T201g Mutant
pdb|3N1Z|B Chain B, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase T201s Mutant
pdb|3N20|B Chain B, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase T201v Mutant
pdb|3RN9|B Chain B, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sL272E DOUBLE MUTANT
pdb|3RNA|B Chain B, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sI100W DOUBLE MUTANT
pdb|3RNB|B Chain B, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sF176W DOUBLE MUTANT
pdb|3RNC|B Chain B, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sI100A DOUBLE MUTANT
pdb|3RNE|B Chain B, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sI276E DOUBLE MUTANT
pdb|3RNF|B Chain B, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sV271A DOUBLE MUTANT
pdb|3RNG|B Chain B, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sW167E DOUBLE MUTANT
Length = 330
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 339 IKDSGQGLVVQKWAPQVEILSHKSISAFLSHC--GWNSVLEALS 380
++ G V+QKW + E L+ K+I A+ S G N+++EA S
Sbjct: 276 LEKEGNREVLQKWVAKWEPLADKAIEAYCSALPDGENAIVEAKS 319
>pdb|1ZBQ|A Chain A, Crystal Structure Of Human 17-beta-hydroxysteroid
Dehydrogenase Type 4 In Complex With Nad
pdb|1ZBQ|B Chain B, Crystal Structure Of Human 17-beta-hydroxysteroid
Dehydrogenase Type 4 In Complex With Nad
pdb|1ZBQ|C Chain C, Crystal Structure Of Human 17-beta-hydroxysteroid
Dehydrogenase Type 4 In Complex With Nad
pdb|1ZBQ|D Chain D, Crystal Structure Of Human 17-beta-hydroxysteroid
Dehydrogenase Type 4 In Complex With Nad
pdb|1ZBQ|E Chain E, Crystal Structure Of Human 17-beta-hydroxysteroid
Dehydrogenase Type 4 In Complex With Nad
pdb|1ZBQ|F Chain F, Crystal Structure Of Human 17-beta-hydroxysteroid
Dehydrogenase Type 4 In Complex With Nad
Length = 327
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 230 MYFSRKLGRPVWPVGSLLLSTGSRAGAGKEYGIS 263
+YF +G P+ G ++L TG+ AG G+ Y ++
Sbjct: 16 LYFQGHMGSPLRFDGRVVLVTGAGAGLGRAYALA 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,802,768
Number of Sequences: 62578
Number of extensions: 489290
Number of successful extensions: 1003
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 974
Number of HSP's gapped (non-prelim): 14
length of query: 387
length of database: 14,973,337
effective HSP length: 101
effective length of query: 286
effective length of database: 8,652,959
effective search space: 2474746274
effective search space used: 2474746274
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)