Query 040467
Match_columns 387
No_of_seqs 138 out of 1282
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 08:44:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040467.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040467hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02863 UDP-glucoronosyl/UDP- 100.0 1.7E-56 3.6E-61 418.3 37.8 368 3-387 7-386 (477)
2 PLN02670 transferase, transfer 100.0 6.6E-56 1.4E-60 411.4 37.3 371 2-387 3-382 (472)
3 PLN02208 glycosyltransferase f 100.0 7E-56 1.5E-60 410.3 34.8 352 2-387 1-354 (442)
4 PLN00414 glycosyltransferase f 100.0 4.2E-55 9.1E-60 405.5 35.4 352 2-387 1-355 (446)
5 PLN02534 UDP-glycosyltransfera 100.0 6.7E-55 1.4E-59 406.6 36.7 371 2-387 5-387 (491)
6 PLN02764 glycosyltransferase f 100.0 6.6E-55 1.4E-59 401.5 35.1 355 1-387 1-360 (453)
7 PLN03007 UDP-glucosyltransfera 100.0 2.4E-54 5.2E-59 407.3 36.2 368 1-387 1-388 (482)
8 PLN02173 UDP-glucosyl transfer 100.0 5.2E-54 1.1E-58 396.9 35.5 349 1-387 1-360 (449)
9 PLN02992 coniferyl-alcohol glu 100.0 1.3E-53 2.9E-58 396.3 36.5 356 2-387 2-381 (481)
10 PLN02562 UDP-glycosyltransfera 100.0 3.7E-53 8.1E-58 394.3 36.9 353 2-387 3-371 (448)
11 PLN03004 UDP-glycosyltransfera 100.0 5.2E-53 1.1E-57 390.5 36.0 362 3-387 1-377 (451)
12 PLN02410 UDP-glucoronosyl/UDP- 100.0 8.6E-53 1.9E-57 390.7 36.4 352 4-387 6-367 (451)
13 PLN03015 UDP-glucosyl transfer 100.0 3E-52 6.5E-57 385.0 35.6 354 3-387 1-378 (470)
14 PLN02152 indole-3-acetate beta 100.0 4.4E-52 9.6E-57 384.7 35.1 362 3-387 1-370 (455)
15 PLN02210 UDP-glucosyl transfer 100.0 6E-52 1.3E-56 386.5 35.7 347 3-387 6-367 (456)
16 PLN02555 limonoid glucosyltran 100.0 7.7E-52 1.7E-56 385.6 35.4 358 4-387 6-380 (480)
17 PLN02207 UDP-glycosyltransfera 100.0 8.6E-52 1.9E-56 383.5 35.4 356 3-387 1-375 (468)
18 PLN00164 glucosyltransferase; 100.0 8.9E-52 1.9E-56 387.8 34.3 354 3-387 1-382 (480)
19 PLN02448 UDP-glycosyltransfera 100.0 1.5E-50 3.3E-55 379.7 36.1 345 3-387 8-366 (459)
20 PLN02554 UDP-glycosyltransfera 100.0 2.5E-50 5.4E-55 379.5 33.5 355 5-387 2-385 (481)
21 PLN02167 UDP-glycosyltransfera 100.0 1.1E-49 2.4E-54 374.6 34.2 362 3-387 1-383 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 8E-40 1.7E-44 309.2 17.0 334 6-387 21-389 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 3.6E-41 7.8E-46 323.8 -9.8 336 7-387 2-366 (500)
24 cd03784 GT1_Gtf_like This fami 100.0 4.4E-36 9.6E-41 281.0 18.8 316 6-387 1-329 (401)
25 TIGR01426 MGT glycosyltransfer 100.0 1.4E-35 3.1E-40 276.3 21.0 304 11-387 1-316 (392)
26 KOG1192 UDP-glucuronosyl and U 100.0 8.6E-35 1.9E-39 279.7 11.3 353 5-387 5-379 (496)
27 COG1819 Glycosyl transferases, 100.0 1.9E-31 4E-36 245.8 13.6 314 5-387 1-325 (406)
28 PF13528 Glyco_trans_1_3: Glyc 99.8 7.7E-17 1.7E-21 146.3 21.6 263 6-387 1-275 (318)
29 PRK12446 undecaprenyldiphospho 99.7 1.4E-15 3E-20 138.7 24.0 267 7-387 3-277 (352)
30 TIGR00661 MJ1255 conserved hyp 99.7 8.4E-15 1.8E-19 132.7 19.2 116 7-146 1-121 (321)
31 PF03033 Glyco_transf_28: Glyc 99.5 3.7E-14 8.1E-19 112.2 4.8 125 8-149 1-132 (139)
32 cd03785 GT1_MurG MurG is an N- 99.5 3.2E-11 6.9E-16 111.0 23.6 271 7-387 1-277 (350)
33 COG0707 MurG UDP-N-acetylgluco 99.4 1.9E-11 4.2E-16 110.5 20.3 267 7-386 2-276 (357)
34 PRK00726 murG undecaprenyldiph 99.4 5.1E-11 1.1E-15 109.9 23.4 267 6-387 2-277 (357)
35 TIGR03590 PseG pseudaminic aci 99.4 8.5E-11 1.8E-15 103.9 20.0 92 278-387 171-265 (279)
36 COG4671 Predicted glycosyl tra 99.3 7.8E-10 1.7E-14 95.9 20.6 302 2-386 6-318 (400)
37 TIGR01133 murG undecaprenyldip 99.3 1.4E-09 3.1E-14 100.0 22.6 113 7-143 2-118 (348)
38 TIGR00215 lpxB lipid-A-disacch 99.2 4.7E-09 1E-13 97.4 19.7 111 6-144 6-119 (385)
39 PRK13609 diacylglycerol glucos 99.1 1E-09 2.3E-14 102.1 14.0 95 277-387 202-298 (380)
40 PRK00025 lpxB lipid-A-disaccha 99.1 1.3E-08 2.9E-13 94.7 18.4 110 7-144 3-115 (380)
41 PLN02871 UDP-sulfoquinovose:DA 98.9 7.1E-07 1.5E-11 85.4 24.7 89 279-387 264-360 (465)
42 cd03814 GT1_like_2 This family 98.8 2.6E-06 5.6E-11 78.3 23.9 43 343-387 246-295 (364)
43 cd03823 GT1_ExpE7_like This fa 98.7 9.4E-06 2E-10 74.4 24.0 117 7-145 1-127 (359)
44 cd03817 GT1_UGDG_like This fam 98.6 3.6E-05 7.9E-10 70.8 24.1 43 343-387 258-307 (374)
45 cd03794 GT1_wbuB_like This fam 98.6 3.1E-05 6.7E-10 71.6 23.5 39 7-46 1-43 (394)
46 cd03800 GT1_Sucrose_synthase T 98.6 4.4E-05 9.5E-10 71.4 24.1 108 16-144 21-130 (398)
47 PF04101 Glyco_tran_28_C: Glyc 98.5 8.7E-09 1.9E-13 84.0 -1.6 92 279-386 1-96 (167)
48 cd03816 GT1_ALG1_like This fam 98.5 0.00026 5.7E-09 66.7 26.6 119 4-146 2-129 (415)
49 PLN02605 monogalactosyldiacylg 98.5 3.3E-06 7.2E-11 78.6 13.4 42 344-387 265-307 (382)
50 PRK13608 diacylglycerol glucos 98.5 3.8E-06 8.3E-11 78.4 13.8 95 276-387 201-298 (391)
51 PLN02846 digalactosyldiacylgly 98.4 0.00016 3.4E-09 68.0 23.8 41 2-43 1-46 (462)
52 PF04007 DUF354: Protein of un 98.4 0.00014 3.1E-09 65.4 22.0 100 17-147 11-112 (335)
53 cd03802 GT1_AviGT4_like This f 98.4 0.00011 2.4E-09 66.9 21.6 96 279-387 172-273 (335)
54 cd03808 GT1_cap1E_like This fa 98.4 0.00022 4.8E-09 65.0 23.2 54 7-66 1-55 (359)
55 cd03818 GT1_ExpC_like This fam 98.4 0.00057 1.2E-08 64.0 26.0 115 7-145 1-116 (396)
56 cd03801 GT1_YqgM_like This fam 98.3 0.00027 5.9E-09 64.6 23.3 108 8-145 2-115 (374)
57 COG3980 spsG Spore coat polysa 98.3 9.6E-05 2.1E-09 62.9 17.4 92 6-144 1-99 (318)
58 cd04962 GT1_like_5 This family 98.3 0.00064 1.4E-08 62.9 25.2 36 7-43 2-38 (371)
59 cd03825 GT1_wcfI_like This fam 98.2 0.00026 5.6E-09 65.2 20.9 37 6-43 1-39 (365)
60 cd03796 GT1_PIG-A_like This fa 98.2 0.0004 8.8E-09 65.1 22.3 110 8-144 2-119 (398)
61 PRK10307 putative glycosyl tra 98.2 0.0019 4.1E-08 60.9 26.1 45 343-387 283-336 (412)
62 cd03805 GT1_ALG2_like This fam 98.2 0.001 2.3E-08 62.1 23.6 43 343-387 279-328 (392)
63 cd03821 GT1_Bme6_like This fam 98.2 0.0011 2.4E-08 60.8 23.5 37 8-45 2-42 (375)
64 cd03811 GT1_WabH_like This fam 98.1 0.00055 1.2E-08 62.2 20.0 38 7-45 1-40 (353)
65 cd03820 GT1_amsD_like This fam 98.1 0.0022 4.8E-08 58.1 24.0 31 15-46 12-42 (348)
66 cd03795 GT1_like_4 This family 98.1 0.0013 2.8E-08 60.4 22.3 94 278-387 191-294 (357)
67 cd03819 GT1_WavL_like This fam 98.1 0.0019 4E-08 59.3 23.4 97 15-145 9-108 (355)
68 cd04955 GT1_like_6 This family 98.1 0.0023 5E-08 58.9 24.0 43 343-387 247-297 (363)
69 cd03822 GT1_ecORF704_like This 98.1 0.0055 1.2E-07 56.2 26.0 37 7-44 1-40 (366)
70 PLN02275 transferase, transfer 98.1 0.0043 9.4E-08 57.6 25.2 61 2-65 1-62 (371)
71 cd03798 GT1_wlbH_like This fam 98.1 0.0029 6.2E-08 57.9 24.0 43 343-387 258-307 (377)
72 TIGR02468 sucrsPsyn_pln sucros 98.1 0.0035 7.6E-08 64.2 25.6 130 3-147 167-342 (1050)
73 TIGR03568 NeuC_NnaA UDP-N-acet 98.0 0.0041 8.9E-08 57.4 23.6 98 277-386 201-304 (365)
74 TIGR02472 sucr_P_syn_N sucrose 98.0 0.0025 5.5E-08 60.5 22.6 107 17-146 27-145 (439)
75 cd03786 GT1_UDP-GlcNAc_2-Epime 98.0 0.0021 4.5E-08 59.4 21.5 96 277-387 198-301 (363)
76 cd03799 GT1_amsK_like This is 98.0 0.0041 8.9E-08 57.0 23.2 43 343-387 235-290 (355)
77 PRK05749 3-deoxy-D-manno-octul 98.0 0.0013 2.9E-08 62.2 20.2 98 7-144 51-153 (425)
78 TIGR03449 mycothiol_MshA UDP-N 97.9 0.0089 1.9E-07 56.1 24.8 43 343-387 282-331 (405)
79 KOG3349 Predicted glycosyltran 97.9 6E-05 1.3E-09 57.6 7.2 97 278-387 4-105 (170)
80 cd03812 GT1_CapH_like This fam 97.8 0.0099 2.2E-07 54.6 22.9 38 7-45 1-40 (358)
81 TIGR00236 wecB UDP-N-acetylglu 97.7 0.0015 3.3E-08 60.5 15.8 111 7-144 2-116 (365)
82 TIGR03492 conserved hypothetic 97.7 0.01 2.2E-07 55.5 20.9 121 237-387 179-320 (396)
83 cd04951 GT1_WbdM_like This fam 97.7 0.012 2.6E-07 54.0 21.2 35 8-43 2-38 (360)
84 cd03807 GT1_WbnK_like This fam 97.7 0.042 9.1E-07 50.1 24.9 51 12-65 8-58 (365)
85 cd05844 GT1_like_7 Glycosyltra 97.5 0.036 7.8E-07 51.1 21.9 43 343-387 244-299 (367)
86 PRK15179 Vi polysaccharide bio 97.5 0.13 2.8E-06 51.4 27.0 119 7-144 283-429 (694)
87 PRK09922 UDP-D-galactose:(gluc 97.5 0.015 3.2E-07 53.8 18.6 94 279-387 181-286 (359)
88 PF02350 Epimerase_2: UDP-N-ac 97.5 0.0016 3.4E-08 59.6 11.4 95 275-386 178-281 (346)
89 PLN02949 transferase, transfer 97.4 0.083 1.8E-06 50.4 23.1 127 3-149 31-171 (463)
90 cd03809 GT1_mtfB_like This fam 97.4 0.027 5.9E-07 51.6 19.1 43 343-387 252-301 (365)
91 PF06722 DUF1205: Protein of u 97.4 0.0002 4.4E-09 51.7 3.5 55 263-317 26-85 (97)
92 TIGR02149 glgA_Coryne glycogen 97.4 0.087 1.9E-06 49.0 22.3 41 345-387 261-309 (388)
93 cd03791 GT1_Glycogen_synthase_ 97.4 0.089 1.9E-06 50.6 22.7 22 20-42 20-41 (476)
94 COG1519 KdtA 3-deoxy-D-manno-o 97.3 0.071 1.5E-06 48.8 19.4 98 8-145 51-153 (419)
95 cd01635 Glycosyltransferase_GT 97.2 0.036 7.8E-07 46.8 16.4 26 15-41 12-37 (229)
96 PF02684 LpxB: Lipid-A-disacch 97.1 0.024 5.1E-07 52.1 14.5 137 222-387 141-284 (373)
97 TIGR03087 stp1 sugar transfera 97.0 0.059 1.3E-06 50.5 17.7 43 343-387 279-327 (397)
98 PRK01021 lpxB lipid-A-disaccha 97.0 0.064 1.4E-06 51.9 17.4 139 222-387 369-512 (608)
99 cd03806 GT1_ALG11_like This fa 97.0 0.32 6.9E-06 46.0 24.1 42 343-387 304-353 (419)
100 PRK00654 glgA glycogen synthas 97.0 0.23 5E-06 47.6 21.2 37 6-43 1-43 (466)
101 cd03804 GT1_wbaZ_like This fam 96.9 0.068 1.5E-06 49.0 16.8 87 280-387 197-289 (351)
102 cd04950 GT1_like_1 Glycosyltra 96.9 0.38 8.2E-06 44.7 22.6 38 7-45 6-44 (373)
103 TIGR03088 stp2 sugar transfera 96.8 0.45 9.8E-06 44.0 23.5 91 15-142 13-107 (374)
104 PLN02501 digalactosyldiacylgly 96.8 0.67 1.5E-05 45.9 22.4 41 345-387 602-647 (794)
105 PF13477 Glyco_trans_4_2: Glyc 96.5 0.047 1E-06 42.5 10.8 101 7-145 1-106 (139)
106 PRK14089 ipid-A-disaccharide s 96.5 0.15 3.2E-06 46.6 14.9 91 278-387 168-259 (347)
107 TIGR02095 glgA glycogen/starch 96.4 0.95 2.1E-05 43.5 23.9 36 6-42 1-42 (473)
108 COG1817 Uncharacterized protei 96.4 0.63 1.4E-05 40.9 17.8 106 13-149 7-115 (346)
109 PF13844 Glyco_transf_41: Glyc 96.4 0.016 3.4E-07 54.4 8.1 100 277-387 284-389 (468)
110 PF13579 Glyco_trans_4_4: Glyc 96.3 0.0066 1.4E-07 48.3 4.9 96 20-146 5-104 (160)
111 cd03792 GT1_Trehalose_phosphor 96.1 1.1 2.5E-05 41.4 22.5 36 8-44 2-39 (372)
112 COG3914 Spy Predicted O-linked 95.9 0.061 1.3E-06 50.9 9.4 99 276-386 428-535 (620)
113 COG5017 Uncharacterized conser 95.8 0.053 1.2E-06 41.1 7.0 84 280-386 2-89 (161)
114 TIGR02193 heptsyl_trn_I lipopo 95.5 0.7 1.5E-05 41.8 15.1 45 7-51 1-46 (319)
115 TIGR02918 accessory Sec system 95.4 2.6 5.6E-05 40.8 18.8 43 343-387 375-421 (500)
116 PRK10422 lipopolysaccharide co 95.2 2.5 5.4E-05 38.9 18.2 51 1-51 1-52 (352)
117 TIGR02201 heptsyl_trn_III lipo 95.1 2.4 5.2E-05 38.8 17.3 45 7-51 1-46 (344)
118 PRK10125 putative glycosyl tra 95.1 3 6.6E-05 39.2 18.9 36 7-43 2-39 (405)
119 TIGR02470 sucr_synth sucrose s 94.6 0.84 1.8E-05 46.2 13.6 126 6-146 256-416 (784)
120 cd04949 GT1_gtfA_like This fam 94.5 2.8 6.2E-05 38.6 16.3 45 343-387 260-307 (372)
121 PF01975 SurE: Survival protei 94.5 0.1 2.2E-06 43.4 5.7 44 6-51 1-44 (196)
122 cd03789 GT1_LPS_heptosyltransf 94.1 3.8 8.3E-05 36.2 18.9 45 7-51 1-46 (279)
123 PLN00142 sucrose synthase 93.9 0.6 1.3E-05 47.3 10.9 55 89-147 384-440 (815)
124 cd04946 GT1_AmsK_like This fam 93.4 0.71 1.5E-05 43.4 10.1 45 343-387 288-339 (407)
125 PRK15484 lipopolysaccharide 1, 93.0 0.81 1.8E-05 42.6 9.8 43 343-387 256-306 (380)
126 PF13692 Glyco_trans_1_4: Glyc 92.8 0.28 6E-06 37.8 5.5 45 343-387 52-100 (135)
127 COG1618 Predicted nucleotide k 92.6 0.98 2.1E-05 35.8 7.9 55 5-65 5-59 (179)
128 PF12000 Glyco_trans_4_3: Gkyc 92.5 2.1 4.6E-05 34.6 10.1 31 115-145 64-95 (171)
129 PRK15427 colanic acid biosynth 92.3 0.79 1.7E-05 43.1 8.7 43 343-387 278-333 (406)
130 KOG4626 O-linked N-acetylgluco 92.1 0.2 4.4E-06 47.9 4.4 100 277-386 758-862 (966)
131 COG0763 LpxB Lipid A disacchar 92.1 8.1 0.00018 35.4 14.2 137 222-387 144-288 (381)
132 PF13439 Glyco_transf_4: Glyco 92.0 0.9 1.9E-05 36.4 7.9 29 15-44 11-39 (177)
133 PF00534 Glycos_transf_1: Glyc 92.0 0.54 1.2E-05 38.0 6.5 43 343-387 72-121 (172)
134 PRK02261 methylaspartate mutas 91.7 0.5 1.1E-05 36.8 5.5 41 3-44 1-41 (137)
135 PRK13932 stationary phase surv 91.3 3.8 8.2E-05 35.6 11.0 46 3-51 3-48 (257)
136 PRK08305 spoVFB dipicolinate s 90.9 0.44 9.6E-06 39.4 4.8 49 1-50 1-49 (196)
137 PF04413 Glycos_transf_N: 3-De 88.9 3.2 6.9E-05 34.3 8.3 100 7-145 22-125 (186)
138 PRK15490 Vi polysaccharide bio 88.8 25 0.00054 34.4 22.8 43 343-387 454-501 (578)
139 TIGR00715 precor6x_red precorr 87.5 5.6 0.00012 34.7 9.3 90 7-145 2-99 (256)
140 PRK08057 cobalt-precorrin-6x r 87.1 6.4 0.00014 34.1 9.4 89 7-145 4-99 (248)
141 COG0859 RfaF ADP-heptose:LPS h 86.0 27 0.00058 31.8 14.9 105 6-143 2-107 (334)
142 PF02441 Flavoprotein: Flavopr 85.7 1.2 2.7E-05 34.2 4.0 44 6-51 1-44 (129)
143 PRK13935 stationary phase surv 85.2 16 0.00036 31.6 10.8 42 7-51 2-43 (253)
144 PLN02316 synthase/transferase 85.0 57 0.0012 34.7 25.4 38 5-43 587-630 (1036)
145 PRK12342 hypothetical protein; 84.7 9 0.0002 33.3 9.1 39 101-146 100-144 (254)
146 PRK13933 stationary phase surv 84.4 22 0.00047 30.9 11.2 40 7-49 2-41 (253)
147 COG0381 WecB UDP-N-acetylgluco 84.4 7.1 0.00015 35.8 8.6 112 9-145 6-123 (383)
148 PF02571 CbiJ: Precorrin-6x re 83.9 10 0.00022 32.9 9.1 93 6-145 1-100 (249)
149 cd03813 GT1_like_3 This family 83.8 12 0.00025 36.1 10.6 43 343-387 353-399 (475)
150 PRK00346 surE 5'(3')-nucleotid 83.5 9.2 0.0002 33.1 8.6 42 7-51 2-43 (250)
151 PF08660 Alg14: Oligosaccharid 83.5 4.7 0.0001 32.7 6.5 112 11-145 3-128 (170)
152 cd02067 B12-binding B12 bindin 83.2 2.5 5.3E-05 31.9 4.6 35 7-42 1-35 (119)
153 COG0003 ArsA Predicted ATPase 83.0 12 0.00025 33.9 9.4 41 6-47 2-43 (322)
154 PRK13789 phosphoribosylamine-- 83.0 4.7 0.0001 38.1 7.3 39 2-46 1-39 (426)
155 PF02951 GSH-S_N: Prokaryotic 82.4 2.4 5.2E-05 32.0 4.1 39 6-45 1-42 (119)
156 PRK05973 replicative DNA helic 82.3 7.3 0.00016 33.5 7.5 44 7-51 66-109 (237)
157 PRK03359 putative electron tra 82.0 14 0.0003 32.2 9.2 39 101-146 103-147 (256)
158 PRK13934 stationary phase surv 81.7 30 0.00064 30.3 11.0 42 7-51 2-43 (266)
159 PRK10916 ADP-heptose:LPS hepto 81.5 17 0.00037 33.3 10.3 45 7-51 2-47 (348)
160 COG0496 SurE Predicted acid ph 81.4 5.5 0.00012 34.3 6.4 28 22-51 16-43 (252)
161 PRK06849 hypothetical protein; 78.8 13 0.00029 34.6 8.8 38 2-44 1-38 (389)
162 PRK09620 hypothetical protein; 78.7 9.9 0.00021 32.5 7.2 38 5-43 3-52 (229)
163 COG1703 ArgK Putative periplas 78.3 50 0.0011 29.4 11.4 40 4-44 50-89 (323)
164 cd01424 MGS_CPS_II Methylglyox 78.2 20 0.00044 26.4 8.0 84 17-143 10-100 (110)
165 PRK05986 cob(I)alamin adenolsy 77.6 39 0.00085 27.9 11.8 37 4-41 21-57 (191)
166 COG2185 Sbm Methylmalonyl-CoA 77.5 4 8.8E-05 31.7 4.0 38 3-41 10-47 (143)
167 TIGR00087 surE 5'/3'-nucleotid 77.2 26 0.00057 30.3 9.4 30 20-51 14-43 (244)
168 PRK06249 2-dehydropantoate 2-r 77.1 6.4 0.00014 35.5 6.0 44 1-51 1-44 (313)
169 smart00851 MGS MGS-like domain 77.1 20 0.00043 25.3 7.4 27 22-51 2-28 (90)
170 PF02844 GARS_N: Phosphoribosy 76.9 14 0.00031 26.8 6.4 37 100-143 52-91 (100)
171 PF01012 ETF: Electron transfe 76.2 28 0.00061 27.8 9.0 92 22-145 20-121 (164)
172 PRK13931 stationary phase surv 75.6 13 0.00028 32.5 7.0 30 22-51 16-47 (261)
173 PF05159 Capsule_synth: Capsul 75.4 17 0.00037 31.9 8.1 42 343-387 182-223 (269)
174 PRK14098 glycogen synthase; Pr 74.9 19 0.00041 34.8 8.9 95 279-387 308-410 (489)
175 PF02310 B12-binding: B12 bind 74.6 9 0.0002 28.7 5.4 38 6-44 1-38 (121)
176 PRK13982 bifunctional SbtC-lik 74.1 14 0.0003 35.3 7.4 39 5-44 256-306 (475)
177 PF00551 Formyl_trans_N: Formy 74.0 26 0.00056 28.7 8.3 105 6-146 1-109 (181)
178 cd03412 CbiK_N Anaerobic cobal 73.0 16 0.00035 27.9 6.4 38 278-315 2-41 (127)
179 PF02142 MGS: MGS-like domain 72.7 5.8 0.00013 28.5 3.7 84 22-142 2-94 (95)
180 cd03115 SRP The signal recogni 71.9 42 0.00091 27.0 9.1 39 8-47 3-41 (173)
181 PRK09165 replicative DNA helic 71.7 21 0.00045 34.7 8.2 44 7-51 219-277 (497)
182 PRK06067 flagellar accessory p 71.7 10 0.00022 32.5 5.6 40 7-47 27-66 (234)
183 PRK06988 putative formyltransf 71.5 26 0.00056 31.6 8.3 32 6-43 3-34 (312)
184 PRK01077 cobyrinic acid a,c-di 71.1 27 0.00059 33.4 8.8 39 1-42 1-40 (451)
185 COG2894 MinD Septum formation 71.0 26 0.00057 29.6 7.4 35 7-42 3-39 (272)
186 TIGR02195 heptsyl_trn_II lipop 71.0 29 0.00063 31.5 8.8 45 7-51 1-46 (334)
187 PRK00784 cobyric acid synthase 70.9 43 0.00094 32.4 10.2 35 7-42 4-39 (488)
188 cd00532 MGS-like MGS-like doma 70.8 30 0.00065 25.6 7.3 85 18-144 10-105 (112)
189 COG1484 DnaC DNA replication p 70.8 6.8 0.00015 34.1 4.3 46 5-51 105-150 (254)
190 COG2086 FixA Electron transfer 70.4 38 0.00082 29.6 8.7 40 99-145 100-145 (260)
191 PHA01633 putative glycosyl tra 69.9 46 0.00099 30.4 9.5 43 343-387 200-252 (335)
192 PRK14099 glycogen synthase; Pr 69.6 7.7 0.00017 37.5 4.8 39 3-42 1-45 (485)
193 PRK10867 signal recognition pa 69.5 35 0.00076 32.4 9.0 42 7-49 102-144 (433)
194 PRK07206 hypothetical protein; 69.4 23 0.0005 33.4 8.0 31 7-43 4-34 (416)
195 PF00448 SRP54: SRP54-type pro 69.0 36 0.00078 28.3 8.1 39 8-47 4-42 (196)
196 TIGR00708 cobA cob(I)alamin ad 69.0 61 0.0013 26.3 11.1 35 5-40 5-39 (173)
197 PF09314 DUF1972: Domain of un 68.5 66 0.0014 26.5 10.4 56 7-66 3-63 (185)
198 PRK11199 tyrA bifunctional cho 68.3 53 0.0011 30.5 9.9 33 5-43 98-131 (374)
199 PRK08506 replicative DNA helic 67.7 31 0.00067 33.2 8.4 44 7-51 194-237 (472)
200 PRK05595 replicative DNA helic 67.7 27 0.00059 33.3 8.1 44 7-51 203-247 (444)
201 cd00984 DnaB_C DnaB helicase C 67.5 37 0.00081 29.0 8.3 44 7-51 15-59 (242)
202 cd01124 KaiC KaiC is a circadi 67.4 14 0.0003 30.1 5.4 42 8-50 2-43 (187)
203 TIGR02655 circ_KaiC circadian 67.1 12 0.00027 36.1 5.7 44 7-51 265-308 (484)
204 PRK06321 replicative DNA helic 67.0 44 0.00096 32.2 9.2 45 7-51 228-272 (472)
205 cd00561 CobA_CobO_BtuR ATP:cor 66.9 64 0.0014 25.8 11.6 33 7-40 4-36 (159)
206 COG2099 CobK Precorrin-6x redu 66.7 45 0.00097 28.8 8.1 80 22-145 14-100 (257)
207 TIGR03880 KaiC_arch_3 KaiC dom 66.6 19 0.0004 30.6 6.2 44 7-51 18-61 (224)
208 TIGR00347 bioD dethiobiotin sy 66.1 22 0.00047 28.4 6.2 28 12-40 5-32 (166)
209 PRK07313 phosphopantothenoylcy 66.0 9.3 0.0002 31.4 4.0 43 7-51 3-45 (182)
210 cd01121 Sms Sms (bacterial rad 65.9 1E+02 0.0023 28.6 11.2 43 7-50 84-126 (372)
211 PRK08760 replicative DNA helic 65.9 22 0.00048 34.2 7.1 45 7-51 231-275 (476)
212 TIGR02919 accessory Sec system 65.8 53 0.0011 31.3 9.4 89 277-387 283-376 (438)
213 cd02070 corrinoid_protein_B12- 65.7 16 0.00034 30.6 5.4 37 5-42 82-118 (201)
214 cd01423 MGS_CPS_I_III Methylgl 65.4 42 0.0009 25.0 7.2 94 10-143 4-106 (116)
215 PRK08229 2-dehydropantoate 2-r 64.7 9.4 0.0002 34.9 4.2 42 1-51 1-42 (341)
216 TIGR03600 phage_DnaB phage rep 64.7 30 0.00066 32.7 7.7 44 7-51 196-240 (421)
217 TIGR02370 pyl_corrinoid methyl 64.1 18 0.0004 30.0 5.5 39 5-44 84-122 (197)
218 PF12146 Hydrolase_4: Putative 64.0 16 0.00035 25.1 4.3 34 6-40 16-49 (79)
219 COG1066 Sms Predicted ATP-depe 63.9 18 0.0004 33.6 5.7 42 8-51 96-137 (456)
220 PRK07773 replicative DNA helic 63.7 25 0.00054 36.9 7.5 45 7-51 219-263 (886)
221 TIGR01425 SRP54_euk signal rec 63.7 52 0.0011 31.1 8.8 40 7-47 102-141 (429)
222 PHA01630 putative group 1 glyc 63.7 36 0.00078 31.0 7.7 36 350-387 196-238 (331)
223 PF01210 NAD_Gly3P_dh_N: NAD-d 63.5 7.1 0.00015 31.1 2.8 32 7-44 1-32 (157)
224 PRK05920 aromatic acid decarbo 63.2 14 0.0003 30.9 4.5 44 6-51 4-47 (204)
225 PRK12448 dihydroxy-acid dehydr 62.8 76 0.0016 31.4 9.8 45 97-148 98-146 (615)
226 TIGR00959 ffh signal recogniti 62.7 60 0.0013 30.8 9.1 41 7-48 101-142 (428)
227 COG2120 Uncharacterized protei 62.6 45 0.00098 28.7 7.7 90 2-123 7-115 (237)
228 COG2085 Predicted dinucleotide 62.2 69 0.0015 26.9 8.3 32 7-44 3-34 (211)
229 COG4081 Uncharacterized protei 61.9 14 0.0003 28.0 3.7 30 15-45 14-43 (148)
230 PRK05579 bifunctional phosphop 61.8 13 0.00027 34.9 4.5 48 2-51 3-50 (399)
231 COG2099 CobK Precorrin-6x redu 61.7 53 0.0012 28.4 7.7 107 22-145 117-229 (257)
232 PRK06749 replicative DNA helic 61.5 34 0.00074 32.4 7.4 44 7-51 188-231 (428)
233 COG0801 FolK 7,8-dihydro-6-hyd 61.4 20 0.00044 28.6 4.9 34 279-312 3-36 (160)
234 TIGR02852 spore_dpaB dipicolin 61.3 15 0.00032 30.3 4.3 40 7-47 2-41 (187)
235 cd01421 IMPCH Inosine monophos 61.0 36 0.00078 27.9 6.3 38 20-65 11-48 (187)
236 cd02037 MRP-like MRP (Multiple 60.9 43 0.00092 26.8 7.0 30 13-43 8-37 (169)
237 TIGR00421 ubiX_pad polyprenyl 60.6 12 0.00026 30.7 3.6 43 7-51 1-43 (181)
238 PRK05636 replicative DNA helic 60.4 29 0.00062 33.7 6.7 45 7-51 267-311 (505)
239 TIGR00460 fmt methionyl-tRNA f 60.4 83 0.0018 28.4 9.4 31 6-42 1-31 (313)
240 COG0299 PurN Folate-dependent 59.8 41 0.00089 27.8 6.4 68 291-385 63-131 (200)
241 PRK11823 DNA repair protein Ra 59.2 25 0.00053 33.6 6.0 43 7-50 82-124 (446)
242 cd02071 MM_CoA_mut_B12_BD meth 58.5 24 0.00052 26.7 4.8 35 7-42 1-35 (122)
243 TIGR00665 DnaB replicative DNA 57.8 65 0.0014 30.6 8.7 45 7-51 197-241 (434)
244 PRK00090 bioD dithiobiotin syn 57.7 87 0.0019 26.4 8.7 34 8-42 2-36 (222)
245 COG0240 GpsA Glycerol-3-phosph 57.5 68 0.0015 29.0 8.0 40 6-51 2-42 (329)
246 PRK11889 flhF flagellar biosyn 57.3 74 0.0016 29.9 8.4 40 6-46 242-281 (436)
247 TIGR03878 thermo_KaiC_2 KaiC d 57.3 1.3E+02 0.0029 26.2 12.2 38 7-45 38-75 (259)
248 PF06180 CbiK: Cobalt chelatas 57.1 18 0.00039 31.6 4.3 38 278-315 2-42 (262)
249 TIGR00416 sms DNA repair prote 57.1 36 0.00077 32.6 6.7 43 7-50 96-138 (454)
250 PF09001 DUF1890: Domain of un 56.5 16 0.00035 28.1 3.4 35 18-53 12-46 (139)
251 PF10093 DUF2331: Uncharacteri 56.4 30 0.00065 31.9 5.8 87 290-386 192-286 (374)
252 COG0052 RpsB Ribosomal protein 56.1 1.2E+02 0.0026 26.2 8.8 30 118-147 157-188 (252)
253 PF06258 Mito_fiss_Elm1: Mitoc 56.1 1.5E+02 0.0033 26.7 10.2 33 353-386 221-253 (311)
254 cd01980 Chlide_reductase_Y Chl 56.0 94 0.002 29.4 9.3 26 117-145 350-375 (416)
255 PLN02240 UDP-glucose 4-epimera 55.7 19 0.00041 32.9 4.6 36 1-41 1-36 (352)
256 PF02571 CbiJ: Precorrin-6x re 55.4 1.2E+02 0.0025 26.4 9.1 104 21-145 117-226 (249)
257 TIGR00110 ilvD dihydroxy-acid 55.4 1.5E+02 0.0033 28.9 10.4 45 97-148 76-124 (535)
258 PF04127 DFP: DNA / pantothena 55.1 13 0.00029 30.5 3.1 38 6-44 4-53 (185)
259 PRK10964 ADP-heptose:LPS hepto 54.8 19 0.00041 32.5 4.4 46 6-51 1-47 (322)
260 PRK06029 3-octaprenyl-4-hydrox 54.8 18 0.0004 29.7 3.8 43 7-51 3-46 (185)
261 TIGR02990 ectoine_eutA ectoine 54.6 1.4E+02 0.003 25.8 9.3 102 19-149 105-217 (239)
262 PF06925 MGDG_synth: Monogalac 54.4 42 0.00091 27.0 5.9 43 96-145 75-123 (169)
263 PRK05748 replicative DNA helic 54.3 77 0.0017 30.3 8.5 45 7-51 205-249 (448)
264 KOG2941 Beta-1,4-mannosyltrans 54.0 1.8E+02 0.0039 26.7 9.8 60 2-67 9-71 (444)
265 KOG0780 Signal recognition par 53.4 44 0.00095 30.9 6.1 41 7-48 103-143 (483)
266 PRK05647 purN phosphoribosylgl 53.3 1.2E+02 0.0026 25.3 8.5 50 7-65 3-58 (200)
267 PRK12921 2-dehydropantoate 2-r 53.2 24 0.00052 31.5 4.8 40 6-51 1-40 (305)
268 PF02374 ArsA_ATPase: Anion-tr 53.1 22 0.00047 32.0 4.3 43 7-50 2-45 (305)
269 TIGR02113 coaC_strep phosphopa 52.8 20 0.00043 29.3 3.7 42 7-50 2-43 (177)
270 cd02069 methionine_synthase_B1 52.4 35 0.00076 28.8 5.2 39 4-43 87-125 (213)
271 COG0287 TyrA Prephenate dehydr 52.4 48 0.001 29.3 6.3 41 5-51 3-43 (279)
272 PF00289 CPSase_L_chain: Carba 52.3 34 0.00074 25.4 4.6 71 291-378 10-88 (110)
273 cd01974 Nitrogenase_MoFe_beta 52.2 1.8E+02 0.0038 27.7 10.6 35 101-145 368-402 (435)
274 TIGR02015 BchY chlorophyllide 52.2 1.2E+02 0.0025 28.8 9.2 26 117-145 355-380 (422)
275 COG0129 IlvD Dihydroxyacid deh 52.1 1.8E+02 0.004 28.5 10.4 45 98-149 108-156 (575)
276 COG2159 Predicted metal-depend 51.9 1.3E+02 0.0029 26.8 9.1 96 263-379 114-211 (293)
277 PRK08006 replicative DNA helic 51.5 1.2E+02 0.0025 29.4 9.2 45 7-51 226-270 (471)
278 PRK05632 phosphate acetyltrans 51.0 2.2E+02 0.0047 29.1 11.5 35 7-42 4-39 (684)
279 PRK10427 putative PTS system f 51.0 36 0.00078 25.5 4.5 36 6-42 3-41 (114)
280 PF07355 GRDB: Glycine/sarcosi 50.2 35 0.00076 31.0 5.0 41 96-143 66-116 (349)
281 PRK10416 signal recognition pa 50.1 1.6E+02 0.0034 26.8 9.3 40 6-46 115-154 (318)
282 COG2910 Putative NADH-flavin r 49.9 16 0.00034 29.9 2.6 31 7-42 2-32 (211)
283 COG0541 Ffh Signal recognition 49.5 63 0.0014 30.4 6.7 43 6-49 101-143 (451)
284 PRK10964 ADP-heptose:LPS hepto 49.3 1.1E+02 0.0025 27.5 8.5 94 277-387 178-277 (322)
285 PRK14092 2-amino-4-hydroxy-6-h 49.0 47 0.001 26.7 5.2 30 276-305 6-35 (163)
286 PRK08818 prephenate dehydrogen 48.9 1.8E+02 0.004 27.0 9.7 34 3-42 2-37 (370)
287 PRK14569 D-alanyl-alanine synt 48.8 2E+02 0.0043 25.7 10.5 38 4-42 2-43 (296)
288 COG1435 Tdk Thymidine kinase [ 48.6 1.6E+02 0.0034 24.5 8.3 36 8-44 7-42 (201)
289 PLN02695 GDP-D-mannose-3',5'-e 48.6 33 0.00073 31.7 5.0 36 1-41 17-52 (370)
290 COG4394 Uncharacterized protei 48.6 59 0.0013 28.7 5.9 31 14-44 12-42 (370)
291 PF14626 RNase_Zc3h12a_2: Zc3h 48.1 22 0.00047 26.6 2.8 32 19-51 9-40 (122)
292 PRK05784 phosphoribosylamine-- 48.1 1.2E+02 0.0025 29.5 8.6 32 6-42 1-33 (486)
293 PRK06522 2-dehydropantoate 2-r 48.0 26 0.00057 31.2 4.2 39 7-51 2-41 (304)
294 PF07015 VirC1: VirC1 protein; 47.9 46 0.001 28.4 5.2 40 8-48 4-44 (231)
295 PLN02470 acetolactate synthase 47.9 84 0.0018 31.3 8.0 88 283-387 2-107 (585)
296 PF04244 DPRP: Deoxyribodipyri 47.7 23 0.0005 30.1 3.5 26 17-43 46-71 (224)
297 PRK06732 phosphopantothenate-- 47.7 22 0.00047 30.5 3.3 19 23-42 30-48 (229)
298 PRK06395 phosphoribosylamine-- 47.7 1.5E+02 0.0032 28.3 9.2 32 1-41 1-32 (435)
299 PRK00923 sirohydrochlorin coba 47.6 78 0.0017 23.9 6.1 36 277-312 2-39 (126)
300 TIGR02699 archaeo_AfpA archaeo 47.3 30 0.00066 28.1 3.9 43 8-51 2-45 (174)
301 cd02065 B12-binding_like B12 b 47.2 45 0.00097 24.9 4.8 37 8-45 2-38 (125)
302 TIGR01285 nifN nitrogenase mol 46.9 1.4E+02 0.003 28.5 8.9 34 101-144 364-397 (432)
303 PF01075 Glyco_transf_9: Glyco 46.3 50 0.0011 28.3 5.5 95 277-387 105-207 (247)
304 TIGR01283 nifE nitrogenase mol 46.0 2.5E+02 0.0055 26.9 10.7 35 100-144 385-419 (456)
305 COG0665 DadA Glycine/D-amino a 45.9 27 0.00059 32.3 4.1 35 3-43 2-36 (387)
306 PRK00911 dihydroxy-acid dehydr 45.8 2.2E+02 0.0048 27.9 9.9 45 97-148 96-144 (552)
307 PF01695 IstB_IS21: IstB-like 45.7 27 0.00059 28.5 3.5 46 5-51 47-92 (178)
308 TIGR02700 flavo_MJ0208 archaeo 45.6 33 0.00073 29.4 4.2 43 8-51 2-46 (234)
309 COG2109 BtuR ATP:corrinoid ade 45.3 1.8E+02 0.0038 24.1 10.2 36 5-41 28-63 (198)
310 PRK00881 purH bifunctional pho 45.3 85 0.0018 30.3 7.0 39 19-65 14-52 (513)
311 cd07039 TPP_PYR_POX Pyrimidine 45.3 1.3E+02 0.0028 24.1 7.3 25 363-387 64-94 (164)
312 PRK04148 hypothetical protein; 45.2 75 0.0016 24.6 5.6 29 6-41 18-46 (134)
313 PRK06731 flhF flagellar biosyn 45.1 2.2E+02 0.0047 25.1 9.3 40 6-46 76-115 (270)
314 PRK07494 2-octaprenyl-6-methox 44.8 25 0.00053 32.7 3.6 35 1-41 3-37 (388)
315 COG2210 Peroxiredoxin family p 44.7 55 0.0012 25.3 4.7 43 8-51 6-48 (137)
316 COG0438 RfaG Glycosyltransfera 44.5 1.7E+02 0.0036 25.7 9.0 42 344-387 257-305 (381)
317 PRK09302 circadian clock prote 44.5 33 0.00071 33.4 4.4 43 7-50 275-317 (509)
318 COG1748 LYS9 Saccharopine dehy 44.4 1.5E+02 0.0032 27.8 8.3 51 7-65 3-55 (389)
319 TIGR02195 heptsyl_trn_II lipop 44.4 1.4E+02 0.0031 26.9 8.5 94 277-387 174-275 (334)
320 TIGR00521 coaBC_dfp phosphopan 44.3 34 0.00073 32.0 4.3 45 5-51 3-47 (390)
321 cd07025 Peptidase_S66 LD-Carbo 44.2 50 0.0011 29.3 5.2 28 290-317 46-73 (282)
322 TIGR01501 MthylAspMutase methy 44.0 62 0.0013 25.0 5.0 38 6-44 2-39 (134)
323 TIGR01007 eps_fam capsular exo 43.6 47 0.001 27.6 4.8 38 5-43 16-55 (204)
324 PRK14098 glycogen synthase; Pr 43.2 45 0.00097 32.3 5.1 37 5-42 5-47 (489)
325 PRK06131 dihydroxy-acid dehydr 43.0 2.1E+02 0.0045 28.3 9.3 44 98-148 99-146 (571)
326 PF02558 ApbA: Ketopantoate re 42.7 24 0.00053 27.5 2.8 45 8-63 1-45 (151)
327 cd03466 Nitrogenase_NifN_2 Nit 42.3 2.6E+02 0.0056 26.6 10.0 36 100-145 362-397 (429)
328 PRK10916 ADP-heptose:LPS hepto 42.1 1.3E+02 0.0029 27.4 7.9 98 276-387 179-285 (348)
329 PRK14478 nitrogenase molybdenu 42.1 2.6E+02 0.0057 27.0 10.1 34 101-144 384-417 (475)
330 COG2874 FlaH Predicted ATPases 42.0 71 0.0015 27.0 5.3 35 10-45 33-67 (235)
331 COG1763 MobB Molybdopterin-gua 42.0 37 0.00079 27.2 3.6 37 8-45 5-41 (161)
332 PRK00885 phosphoribosylamine-- 41.8 96 0.0021 29.3 7.1 23 6-34 1-23 (420)
333 TIGR00877 purD phosphoribosyla 41.6 1.8E+02 0.0038 27.5 8.9 34 6-45 1-34 (423)
334 cd03409 Chelatase_Class_II Cla 41.1 1.3E+02 0.0028 21.4 7.0 36 279-314 2-40 (101)
335 CHL00072 chlL photochlorophyll 41.1 51 0.0011 29.3 4.8 38 7-45 2-39 (290)
336 cd01840 SGNH_hydrolase_yrhL_li 40.9 62 0.0013 25.3 4.8 38 277-315 51-88 (150)
337 PRK13236 nitrogenase reductase 40.8 56 0.0012 29.2 5.0 37 4-41 4-41 (296)
338 TIGR00725 conserved hypothetic 40.8 81 0.0017 25.2 5.4 97 263-386 19-119 (159)
339 PLN02939 transferase, transfer 40.4 48 0.001 34.7 4.9 38 4-42 480-523 (977)
340 PF13450 NAD_binding_8: NAD(P) 40.4 36 0.00078 22.5 2.9 18 23-41 9-26 (68)
341 PRK00039 ruvC Holliday junctio 40.3 93 0.002 25.0 5.7 45 95-146 46-105 (164)
342 PRK14619 NAD(P)H-dependent gly 40.2 63 0.0014 29.0 5.3 33 5-43 4-36 (308)
343 PF08323 Glyco_transf_5: Starc 40.2 23 0.0005 30.6 2.4 24 19-43 19-42 (245)
344 cd03416 CbiX_SirB_N Sirohydroc 40.1 1.1E+02 0.0025 21.8 5.8 35 279-313 2-38 (101)
345 COG3349 Uncharacterized conser 39.7 32 0.00068 33.0 3.3 32 6-43 1-32 (485)
346 TIGR01281 DPOR_bchL light-inde 39.5 53 0.0012 28.7 4.7 34 7-41 2-35 (268)
347 cd07037 TPP_PYR_MenD Pyrimidin 39.5 1.7E+02 0.0037 23.4 7.2 25 363-387 61-91 (162)
348 TIGR01917 gly_red_sel_B glycin 39.3 58 0.0013 30.5 4.8 43 95-144 61-113 (431)
349 COG4088 Predicted nucleotide k 39.3 36 0.00078 28.6 3.1 34 7-41 3-36 (261)
350 TIGR01918 various_sel_PB selen 39.2 59 0.0013 30.4 4.9 43 95-144 61-113 (431)
351 TIGR03713 acc_sec_asp1 accesso 39.0 18 0.00038 35.3 1.7 41 344-386 409-455 (519)
352 TIGR03432 yjhG_yagF probable d 38.9 2.8E+02 0.006 27.8 9.5 45 97-148 132-182 (640)
353 PLN02939 transferase, transfer 38.9 1.8E+02 0.004 30.7 8.7 43 343-387 836-885 (977)
354 PRK13054 lipid kinase; Reviewe 38.9 72 0.0016 28.5 5.5 40 1-43 1-40 (300)
355 TIGR00355 purH phosphoribosyla 38.7 1.4E+02 0.0029 28.9 7.2 38 20-65 11-48 (511)
356 cd02034 CooC The accessory pro 38.6 78 0.0017 23.7 4.8 37 7-44 1-37 (116)
357 PRK02155 ppnK NAD(+)/NADH kina 38.6 85 0.0018 28.0 5.7 25 363-387 64-92 (291)
358 PF01075 Glyco_transf_9: Glyco 38.4 86 0.0019 26.8 5.8 99 5-147 105-211 (247)
359 cd02032 Bchl_like This family 37.8 57 0.0012 28.5 4.6 35 7-42 2-36 (267)
360 TIGR00745 apbA_panE 2-dehydrop 37.7 34 0.00073 30.3 3.2 34 24-63 5-38 (293)
361 cd00861 ProRS_anticodon_short 37.6 92 0.002 21.8 4.9 56 6-64 2-60 (94)
362 TIGR00750 lao LAO/AO transport 37.4 2.9E+02 0.0063 24.7 9.1 40 6-46 35-74 (300)
363 PRK04328 hypothetical protein; 37.3 2.7E+02 0.0059 24.0 11.3 42 7-49 25-66 (249)
364 PRK08125 bifunctional UDP-gluc 37.1 3E+02 0.0066 27.9 10.1 33 6-44 1-34 (660)
365 COG1893 ApbA Ketopantoate redu 37.0 84 0.0018 28.3 5.5 49 6-65 1-49 (307)
366 PRK01372 ddl D-alanine--D-alan 37.0 3E+02 0.0065 24.4 11.0 37 6-43 5-45 (304)
367 PRK13982 bifunctional SbtC-lik 36.4 59 0.0013 31.2 4.6 45 5-51 70-114 (475)
368 TIGR00313 cobQ cobyric acid sy 36.3 4.1E+02 0.0088 25.7 11.1 28 15-43 9-36 (475)
369 PRK05282 (alpha)-aspartyl dipe 36.2 2E+02 0.0044 24.7 7.4 45 265-311 22-66 (233)
370 PF00920 ILVD_EDD: Dehydratase 35.9 58 0.0013 31.5 4.4 48 96-150 65-116 (521)
371 PF00070 Pyr_redox: Pyridine n 35.3 58 0.0013 22.1 3.4 22 21-43 10-31 (80)
372 cd01985 ETF The electron trans 35.0 2.4E+02 0.0053 22.8 9.8 40 98-144 79-121 (181)
373 PRK08163 salicylate hydroxylas 34.5 49 0.0011 30.8 3.8 33 3-41 2-34 (396)
374 PF12695 Abhydrolase_5: Alpha/ 34.5 95 0.0021 23.5 5.0 34 8-42 1-34 (145)
375 cd03114 ArgK-like The function 34.3 2.3E+02 0.0049 22.2 10.4 36 8-44 2-37 (148)
376 PF02585 PIG-L: GlcNAc-PI de-N 34.1 2E+02 0.0044 21.5 7.0 22 96-124 86-107 (128)
377 PF06506 PrpR_N: Propionate ca 33.9 84 0.0018 25.5 4.7 120 17-150 17-155 (176)
378 PRK14477 bifunctional nitrogen 33.8 3.6E+02 0.0078 28.7 10.2 35 101-145 380-414 (917)
379 cd01715 ETF_alpha The electron 33.8 2.5E+02 0.0053 22.5 9.3 41 98-145 71-114 (168)
380 COG0143 MetG Methionyl-tRNA sy 33.8 84 0.0018 30.9 5.2 30 15-45 21-53 (558)
381 PRK07819 3-hydroxybutyryl-CoA 33.7 55 0.0012 29.1 3.8 38 1-44 1-38 (286)
382 PRK06835 DNA replication prote 33.6 57 0.0012 29.7 3.9 45 6-51 184-228 (329)
383 PRK14106 murD UDP-N-acetylmura 33.6 56 0.0012 31.2 4.1 35 3-43 3-37 (450)
384 PF01380 SIS: SIS domain SIS d 33.6 1.2E+02 0.0025 22.7 5.3 42 8-51 56-97 (131)
385 KOG2836 Protein tyrosine phosp 33.2 2.3E+02 0.0049 21.9 6.7 55 4-67 15-71 (173)
386 PLN02568 polyamine oxidase 33.2 52 0.0011 32.4 3.8 35 1-41 1-40 (539)
387 PF07991 IlvN: Acetohydroxy ac 33.2 67 0.0015 25.8 3.7 49 6-65 5-55 (165)
388 COG0503 Apt Adenine/guanine ph 33.1 1.2E+02 0.0027 24.7 5.5 28 117-144 53-82 (179)
389 COG1797 CobB Cobyrinic acid a, 33.1 41 0.00088 31.6 2.9 32 8-40 3-35 (451)
390 cd01141 TroA_d Periplasmic bin 33.0 67 0.0014 26.1 4.0 29 117-145 69-99 (186)
391 PF05728 UPF0227: Uncharacteri 33.0 1E+02 0.0023 25.4 5.0 44 100-148 47-91 (187)
392 PRK06719 precorrin-2 dehydroge 32.8 88 0.0019 24.9 4.5 40 5-51 13-52 (157)
393 PRK13234 nifH nitrogenase redu 32.6 96 0.0021 27.7 5.2 34 7-41 6-39 (295)
394 COG0452 Dfp Phosphopantothenoy 32.5 52 0.0011 30.8 3.5 44 7-52 6-49 (392)
395 PTZ00318 NADH dehydrogenase-li 32.4 55 0.0012 30.9 3.9 37 3-45 8-44 (424)
396 TIGR00064 ftsY signal recognit 32.4 97 0.0021 27.3 5.1 40 7-47 74-113 (272)
397 cd01983 Fer4_NifH The Fer4_Nif 32.2 1.1E+02 0.0024 21.0 4.7 33 8-41 2-34 (99)
398 PRK02910 light-independent pro 32.2 75 0.0016 31.1 4.7 26 117-145 362-387 (519)
399 PF02702 KdpD: Osmosensitive K 32.1 70 0.0015 26.7 3.8 40 5-45 5-44 (211)
400 PRK09219 xanthine phosphoribos 31.9 1.3E+02 0.0027 24.9 5.4 29 117-145 50-80 (189)
401 cd03415 CbiX_CbiC Archaeal sir 31.8 2.2E+02 0.0048 21.6 6.3 35 278-312 2-37 (125)
402 PRK07208 hypothetical protein; 31.8 49 0.0011 31.8 3.4 34 2-41 1-34 (479)
403 PRK13886 conjugal transfer pro 31.7 1.1E+02 0.0024 26.4 5.1 40 4-44 2-41 (241)
404 PRK14099 glycogen synthase; Pr 31.6 2.8E+02 0.006 26.9 8.5 24 363-386 370-397 (485)
405 PRK13604 luxD acyl transferase 31.4 96 0.0021 27.9 4.9 35 5-40 36-70 (307)
406 cd01981 Pchlide_reductase_B Pc 31.4 80 0.0017 30.0 4.8 26 117-145 370-395 (430)
407 COG0223 Fmt Methionyl-tRNA for 31.4 72 0.0016 28.6 4.0 35 6-46 2-36 (307)
408 cd01976 Nitrogenase_MoFe_alpha 31.3 67 0.0015 30.4 4.2 34 101-144 360-393 (421)
409 PRK05653 fabG 3-ketoacyl-(acyl 31.2 1.1E+02 0.0025 25.7 5.4 38 1-43 1-38 (246)
410 PF03403 PAF-AH_p_II: Platelet 31.2 49 0.0011 30.8 3.2 40 5-45 99-138 (379)
411 PF05818 TraT: Enterobacterial 31.0 88 0.0019 26.4 4.2 41 270-310 13-54 (215)
412 TIGR01278 DPOR_BchB light-inde 30.8 78 0.0017 30.9 4.6 27 117-146 364-390 (511)
413 TIGR00640 acid_CoA_mut_C methy 30.5 96 0.0021 23.9 4.2 36 5-41 53-89 (132)
414 CHL00076 chlB photochlorophyll 30.5 79 0.0017 30.8 4.6 26 117-145 374-399 (513)
415 PRK10422 lipopolysaccharide co 30.4 2.3E+02 0.005 25.9 7.5 28 117-146 262-289 (352)
416 PRK07530 3-hydroxybutyryl-CoA 30.3 60 0.0013 28.9 3.5 35 2-42 1-35 (292)
417 PF01995 DUF128: Domain of unk 30.2 1.6E+02 0.0035 25.3 5.8 75 277-385 145-219 (236)
418 cd01965 Nitrogenase_MoFe_beta_ 30.1 86 0.0019 29.7 4.7 26 117-145 371-396 (428)
419 COG0467 RAD55 RecA-superfamily 30.0 1.1E+02 0.0023 26.6 5.0 45 6-51 24-68 (260)
420 cd00983 recA RecA is a bacter 29.8 2E+02 0.0044 26.1 6.7 37 8-45 58-94 (325)
421 TIGR03877 thermo_KaiC_1 KaiC d 29.7 3.6E+02 0.0077 23.0 9.4 42 7-49 23-64 (237)
422 PRK00771 signal recognition pa 29.6 1.1E+02 0.0023 29.3 5.1 41 6-47 96-136 (437)
423 cd03789 GT1_LPS_heptosyltransf 29.5 2.6E+02 0.0057 24.4 7.5 31 20-51 140-170 (279)
424 TIGR02201 heptsyl_trn_III lipo 29.5 2.9E+02 0.0062 25.1 7.9 28 117-146 260-287 (344)
425 cd02040 NifH NifH gene encodes 29.4 1E+02 0.0023 26.8 4.9 35 7-42 3-37 (270)
426 cd07062 Peptidase_S66_mccF_lik 29.4 97 0.0021 27.9 4.7 28 290-317 50-77 (308)
427 TIGR02012 tigrfam_recA protein 29.4 2.6E+02 0.0056 25.4 7.3 37 8-45 58-94 (321)
428 PF06564 YhjQ: YhjQ protein; 29.3 1.1E+02 0.0024 26.4 4.8 34 7-41 3-37 (243)
429 PLN02891 IMP cyclohydrolase 29.2 1.5E+02 0.0032 28.8 5.9 49 18-77 31-79 (547)
430 PRK11064 wecC UDP-N-acetyl-D-m 29.1 80 0.0017 29.8 4.3 32 5-42 3-34 (415)
431 PLN02293 adenine phosphoribosy 29.0 1.9E+02 0.0041 23.8 5.9 28 117-144 62-91 (187)
432 PRK13011 formyltetrahydrofolat 29.0 4.2E+02 0.009 23.6 10.5 108 3-147 87-196 (286)
433 PRK08939 primosomal protein Dn 28.8 68 0.0015 28.8 3.6 45 6-51 157-201 (306)
434 PF08433 KTI12: Chromatin asso 28.7 4.1E+02 0.0089 23.4 9.3 107 7-156 3-115 (270)
435 TIGR00288 conserved hypothetic 28.6 1.4E+02 0.003 23.9 4.8 41 16-65 115-156 (160)
436 PF01372 Melittin: Melittin; 28.2 17 0.00038 18.5 -0.2 16 371-386 1-16 (26)
437 PRK14618 NAD(P)H-dependent gly 28.2 86 0.0019 28.4 4.2 33 5-43 4-36 (328)
438 cd03414 CbiX_SirB_C Sirohydroc 28.0 2.5E+02 0.0054 20.7 6.4 36 278-313 2-39 (117)
439 TIGR03453 partition_RepA plasm 28.0 98 0.0021 28.9 4.6 39 5-44 103-143 (387)
440 PRK13768 GTPase; Provisional 27.9 1.1E+02 0.0023 26.7 4.6 37 7-44 4-40 (253)
441 PRK06370 mercuric reductase; V 27.9 76 0.0017 30.4 4.0 35 1-41 1-35 (463)
442 TIGR03029 EpsG chain length de 27.9 1.3E+02 0.0028 26.4 5.2 37 5-42 102-140 (274)
443 PF02016 Peptidase_S66: LD-car 27.9 67 0.0014 28.5 3.3 28 290-317 46-73 (284)
444 PRK07454 short chain dehydroge 27.8 1.3E+02 0.0027 25.6 5.0 38 1-42 1-38 (241)
445 TIGR01012 Sa_S2_E_A ribosomal 27.8 92 0.002 25.9 3.9 30 117-146 108-139 (196)
446 PRK09072 short chain dehydroge 27.7 1.3E+02 0.0028 25.9 5.2 19 23-42 19-37 (263)
447 PRK08155 acetolactate synthase 27.6 2.8E+02 0.006 27.5 7.9 88 283-387 3-107 (564)
448 PRK13196 pyrrolidone-carboxyla 27.6 1.5E+02 0.0032 25.1 5.1 25 7-31 3-29 (211)
449 PRK13695 putative NTPase; Prov 27.5 2.9E+02 0.0063 22.1 6.9 32 6-38 1-32 (174)
450 PRK13869 plasmid-partitioning 27.4 1E+02 0.0023 29.0 4.7 39 5-44 120-160 (405)
451 PRK09435 membrane ATPase/prote 27.4 4.8E+02 0.01 23.8 9.3 41 5-46 56-96 (332)
452 PRK09814 beta-1,6-galactofuran 27.3 88 0.0019 28.4 4.1 44 343-387 206-265 (333)
453 PRK14116 gpmA phosphoglyceromu 27.2 41 0.00088 28.7 1.8 21 365-385 178-198 (228)
454 PLN00016 RNA-binding protein; 27.2 77 0.0017 29.4 3.8 35 6-43 53-89 (378)
455 TIGR03837 efp_adjacent_2 conse 27.2 75 0.0016 29.2 3.5 34 10-43 5-38 (371)
456 TIGR02853 spore_dpaA dipicolin 27.1 1.5E+02 0.0034 26.3 5.5 22 22-44 13-34 (287)
457 PRK00005 fmt methionyl-tRNA fo 27.1 4.6E+02 0.01 23.5 9.5 31 6-42 1-31 (309)
458 PRK08181 transposase; Validate 27.0 82 0.0018 27.7 3.7 44 5-49 106-149 (269)
459 PRK12377 putative replication 26.9 91 0.002 27.1 3.9 45 6-51 102-146 (248)
460 PF03720 UDPG_MGDP_dh_C: UDP-g 26.9 82 0.0018 23.0 3.2 31 20-51 17-47 (106)
461 PRK06526 transposase; Provisio 26.8 51 0.0011 28.7 2.3 44 5-49 98-141 (254)
462 TIGR00228 ruvC crossover junct 26.7 2.1E+02 0.0045 22.8 5.5 48 93-147 40-102 (156)
463 PRK13185 chlL protochlorophyll 26.7 1.3E+02 0.0027 26.3 4.9 34 7-41 4-37 (270)
464 cd03818 GT1_ExpC_like This fam 26.6 1.9E+02 0.004 26.9 6.3 25 292-316 10-34 (396)
465 COG0859 RfaF ADP-heptose:LPS h 26.5 2.3E+02 0.005 25.8 6.7 98 6-146 176-278 (334)
466 PRK07308 flavodoxin; Validated 26.4 1.4E+02 0.0029 23.2 4.6 36 5-43 3-39 (146)
467 KOG0541 Alkyl hydroperoxide re 26.4 60 0.0013 25.7 2.4 30 12-42 57-86 (171)
468 PF02780 Transketolase_C: Tran 26.4 1.2E+02 0.0026 22.7 4.1 35 5-42 9-43 (124)
469 PRK08850 2-octaprenyl-6-methox 26.3 72 0.0016 29.9 3.5 34 2-41 1-34 (405)
470 PRK00652 lpxK tetraacyldisacch 26.3 1.2E+02 0.0025 27.6 4.6 34 7-41 51-86 (325)
471 PRK13463 phosphatase PhoE; Pro 26.1 47 0.001 27.6 2.0 21 365-385 147-167 (203)
472 PRK05708 2-dehydropantoate 2-r 26.1 80 0.0017 28.3 3.5 33 5-43 2-34 (305)
473 PRK03094 hypothetical protein; 26.1 64 0.0014 22.3 2.2 22 22-44 10-31 (80)
474 cd03129 GAT1_Peptidase_E_like 26.0 3.9E+02 0.0084 22.3 8.6 103 264-387 15-119 (210)
475 TIGR03837 efp_adjacent_2 conse 25.8 1.8E+02 0.0039 26.8 5.6 89 288-386 188-284 (371)
476 PRK07236 hypothetical protein; 25.8 76 0.0017 29.5 3.5 33 3-41 4-36 (386)
477 cd07035 TPP_PYR_POX_like Pyrim 25.8 3.2E+02 0.0069 21.3 6.7 25 363-387 60-90 (155)
478 PRK06027 purU formyltetrahydro 25.7 4.8E+02 0.01 23.2 10.2 100 4-142 88-191 (286)
479 PRK07889 enoyl-(acyl carrier p 25.6 1.6E+02 0.0034 25.4 5.2 31 7-41 8-40 (256)
480 TIGR01286 nifK nitrogenase mol 25.6 1.1E+02 0.0023 30.0 4.5 26 117-145 437-462 (515)
481 PF05762 VWA_CoxE: VWA domain 25.6 1.6E+02 0.0034 25.0 5.1 38 5-43 150-188 (222)
482 PRK10239 2-amino-4-hydroxy-6-h 25.5 2.6E+02 0.0056 22.4 5.9 27 279-305 3-29 (159)
483 TIGR01498 folK 2-amino-4-hydro 25.4 69 0.0015 24.5 2.6 29 280-308 1-29 (127)
484 PRK13230 nitrogenase reductase 25.3 1.4E+02 0.0031 26.2 5.0 34 7-41 3-36 (279)
485 PRK08293 3-hydroxybutyryl-CoA 25.2 94 0.002 27.5 3.8 32 6-43 4-35 (287)
486 COG0552 FtsY Signal recognitio 25.1 1.4E+02 0.003 27.1 4.7 42 7-49 141-182 (340)
487 PRK14119 gpmA phosphoglyceromu 25.0 49 0.0011 28.2 1.9 21 365-385 178-198 (228)
488 PHA02519 plasmid partition pro 25.0 1.3E+02 0.0028 28.2 4.8 36 5-41 105-142 (387)
489 COG2084 MmsB 3-hydroxyisobutyr 24.9 1E+02 0.0023 27.3 3.9 30 7-42 2-31 (286)
490 COG0300 DltE Short-chain dehyd 24.7 1.6E+02 0.0034 25.9 4.9 32 6-41 6-37 (265)
491 PRK04020 rps2P 30S ribosomal p 24.7 1.1E+02 0.0024 25.6 3.8 30 117-146 114-145 (204)
492 PF09140 MipZ: ATPase MipZ; I 24.6 1.3E+02 0.0028 26.2 4.3 37 7-44 1-39 (261)
493 TIGR00640 acid_CoA_mut_C methy 24.6 2.1E+02 0.0047 21.9 5.2 56 4-65 1-60 (132)
494 PF01497 Peripla_BP_2: Peripla 24.6 1.3E+02 0.0028 25.4 4.5 32 117-148 60-93 (238)
495 PRK05234 mgsA methylglyoxal sy 24.6 2.4E+02 0.0052 22.0 5.5 97 4-144 3-112 (142)
496 PF01591 6PF2K: 6-phosphofruct 24.6 4.4E+02 0.0096 22.4 7.6 117 4-149 11-133 (222)
497 TIGR01761 thiaz-red thiazoliny 24.5 2.1E+02 0.0045 26.3 5.9 38 350-387 52-95 (343)
498 TIGR03445 mycothiol_MshB 1D-my 24.5 3E+02 0.0066 24.4 6.8 20 97-123 110-129 (284)
499 PRK05249 soluble pyridine nucl 24.4 95 0.0021 29.7 4.0 35 1-41 1-35 (461)
500 PF13419 HAD_2: Haloacid dehal 24.4 1.2E+02 0.0026 23.7 4.1 25 119-144 152-176 (176)
No 1
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.7e-56 Score=418.27 Aligned_cols=368 Identities=35% Similarity=0.621 Sum_probs=282.2
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCC
Q 040467 3 QRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDS 82 (387)
Q Consensus 3 ~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 82 (387)
.++.||+++|+|++||++||+.||+.|+. +|+.|||++++.+.+++.+......++++..+|++ ..++++++.++...
T Consensus 7 ~~~~HVvl~PfpaqGHi~P~l~LAk~La~-~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P-~~~~lPdG~~~~~~ 84 (477)
T PLN02863 7 PAGTHVLVFPFPAQGHMIPLLDLTHRLAL-RGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFP-SHPSIPSGVENVKD 84 (477)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCC-CcCCCCCCCcChhh
Confidence 45789999999999999999999999999 99999999999998877764321146888888875 34678877765544
Q ss_pred CCCCchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHhCCceEEEcchhHHHHHHHHHhhhcC
Q 040467 83 LPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSLWLNL 162 (387)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 162 (387)
.+......++.++..+.+.+++++++. .. +++|||+|.+..|+..+|+++|||++.+++++++.++.+.+.....
T Consensus 85 ~~~~~~~~~~~a~~~~~~~~~~~l~~~----~~-~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~ 159 (477)
T PLN02863 85 LPPSGFPLMIHALGELYAPLLSWFRSH----PS-PPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREM 159 (477)
T ss_pred cchhhHHHHHHHHHHhHHHHHHHHHhC----CC-CCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhcc
Confidence 332223456666677777788877764 12 6799999999999999999999999999999999998887765443
Q ss_pred CCCC-----CCcc---cCCCCCCCcccCccccchhhhhcCCCChhHHHHHHHhhhhccCcEEEEechhhhcHHHHHHHHh
Q 040467 163 PHRD-----SDEF---LLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKIGLMYFSR 234 (387)
Q Consensus 163 p~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~ 234 (387)
+... .+.. .+|+++. ++.++++.++............+.+.......++++++||+++||+.++++++.
T Consensus 160 ~~~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 236 (477)
T PLN02863 160 PTKINPDDQNEILSFSKIPNCPK---YPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKK 236 (477)
T ss_pred cccccccccccccccCCCCCCCC---cChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHh
Confidence 3211 1112 2455554 777777766653322223334444444445677889999999999999999988
Q ss_pred hcC-CCeEEeccccCCCCCCC---CCCCCCCCChhhhccccCCCCCCeeEEEecCCCcCCCHHHHHHHHHHHHhCCCcEE
Q 040467 235 KLG-RPVWPVGSLLLSTGSRA---GAGKEYGISTELCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFI 310 (387)
Q Consensus 235 ~~~-~~~~~vGp~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~a~~~~~~~~l 310 (387)
.+. ++++.|||+.+...... .++......++++.+||+.++++++|||||||+...+.+++++++.+|++.+++||
T Consensus 237 ~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~fl 316 (477)
T PLN02863 237 ELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFI 316 (477)
T ss_pred hcCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEE
Confidence 765 68999999975431110 01111111356799999999888999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEeccccCHHHhhCccCcceeeeccChhHHHHHHHcCCcccC
Q 040467 311 WVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l~ 387 (387)
|+++.+.+. .... ..+|+++.++++ ++|+++.+|+||.+||+|++|++|||||||||++||+++|||||+
T Consensus 317 w~~~~~~~~----~~~~-~~lp~~~~~r~~--~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~ 386 (477)
T PLN02863 317 WCVKEPVNE----ESDY-SNIPSGFEDRVA--GRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLA 386 (477)
T ss_pred EEECCCccc----ccch-hhCCHHHHHHhc--cCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEe
Confidence 999854210 0001 237889999988 899999999999999999999999999999999999999999986
No 2
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=6.6e-56 Score=411.38 Aligned_cols=371 Identities=29% Similarity=0.465 Sum_probs=273.0
Q ss_pred CCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCC-CCCeeEEeccCCCCCCCCCCCCCCC
Q 040467 2 AQRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQ-NSSIHLREIPFDGIAHDLPPCTENS 80 (387)
Q Consensus 2 ~~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (387)
+..+.||+++|+|++||++||+.||+.|+. ||+.|||++++.+..++.+.... ..++++..+|++ ..++++++.+..
T Consensus 3 ~~~~~HVvl~P~paqGHi~P~l~LAk~La~-~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p-~~dglp~~~~~~ 80 (472)
T PLN02670 3 REEVLHVAMFPWLAMGHLIPFLRLSKLLAQ-KGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLP-SVPGLPSSAESS 80 (472)
T ss_pred CCCCcEEEEeCChhhhHHHHHHHHHHHHHh-CCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCC-ccCCCCCCcccc
Confidence 455789999999999999999999999999 99999999999988777643211 146999999976 336777655443
Q ss_pred CCCCCCchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHhCCceEEEcchhHHHHHHHHHhhh
Q 040467 81 DSLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSLWL 160 (387)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~ 160 (387)
.+.+......+..+.+.+.+.+++++++. +++|||+|.+..|+..+|+++|||.+.++++++...+.+.+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~ 153 (472)
T PLN02670 81 TDVPYTKQQLLKKAFDLLEPPLTTFLETS-------KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSS 153 (472)
T ss_pred cccchhhHHHHHHHHHHhHHHHHHHHHhC-------CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHh
Confidence 22221111244455677888899998877 79999999999999999999999999999999888877654321
Q ss_pred cC---CCCC-CCc-ccCCCC-CC--CcccCccccchhhhhcCCCChhHHHHHHHhhhhccCcEEEEechhhhcHHHHHHH
Q 040467 161 NL---PHRD-SDE-FLLPDF-PE--ASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKIGLMYF 232 (387)
Q Consensus 161 ~~---p~~~-~~~-~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~ 232 (387)
.. .... .+. ...|+. |. ...++.++++.++............+.+......+++++++||+++||+.+++.+
T Consensus 154 ~~~~~~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l 233 (472)
T PLN02670 154 LMEGGDLRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLL 233 (472)
T ss_pred hhhcccCCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHH
Confidence 11 1001 111 123433 21 1124456677665432211122223334444566788999999999999999999
Q ss_pred HhhcCCCeEEeccccCCCCCCCCCCCCCCCChhhhccccCCCCCCeeEEEecCCCcCCCHHHHHHHHHHHHhCCCcEEEE
Q 040467 233 SRKLGRPVWPVGSLLLSTGSRAGAGKEYGISTELCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWV 312 (387)
Q Consensus 233 ~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~a~~~~~~~~l~~ 312 (387)
+..+.++++.|||+.+................+++.+|||++++++||||||||+...+.+++++++.+|+..+++|||+
T Consensus 234 ~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv 313 (472)
T PLN02670 234 SDLYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFWV 313 (472)
T ss_pred HHhhCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEE
Confidence 88666789999999753100000000000112579999999988899999999999999999999999999999999999
Q ss_pred EcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEeccccCHHHhhCccCcceeeeccChhHHHHHHHcCCcccC
Q 040467 313 VKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l~ 387 (387)
++.+.+.+ .+. . ..+|++|.++++ .+++++.+|+||.+||+|+++++|||||||||++||+++|||||+
T Consensus 314 ~r~~~~~~--~~~-~-~~lp~~f~~~~~--~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~ 382 (472)
T PLN02670 314 LRNEPGTT--QNA-L-EMLPDGFEERVK--GRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLIL 382 (472)
T ss_pred EcCCcccc--cch-h-hcCChHHHHhcc--CCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEe
Confidence 98642110 010 1 248899999998 888999999999999999999999999999999999999999986
No 3
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=7e-56 Score=410.28 Aligned_cols=352 Identities=27% Similarity=0.402 Sum_probs=266.5
Q ss_pred CCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCC
Q 040467 2 AQRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSD 81 (387)
Q Consensus 2 ~~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 81 (387)
|.+|.||+++|+|++||++|++.||+.|++ +||+|||++++.+..++.+.+.....+++..++.+ ..++++.+.+...
T Consensus 1 ~~~~~hvv~~P~paqGHi~P~l~LAk~La~-~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p-~~dgLp~g~~~~~ 78 (442)
T PLN02208 1 MEPKFHAFMFPWFAFGHMIPFLHLANKLAE-KGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIP-PVNGLPAGAETTS 78 (442)
T ss_pred CCCCCEEEEecCccccHHHHHHHHHHHHHh-CCCEEEEEeccchhhhhhcccCCCCceEEEEeCCC-CccCCCCCccccc
Confidence 556889999999999999999999999999 99999999999988887765432235778877654 2256766644322
Q ss_pred CCCCCchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHhCCceEEEcchhHHHHHHHHHhhhc
Q 040467 82 SLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSLWLN 161 (387)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~ 161 (387)
.........+...++.+.+.++++++++ ++||||+| ++.|+..+|+++|||++.++++++.... +.+.
T Consensus 79 ~l~~~l~~~~~~~~~~~~~~l~~~L~~~-------~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~--- 146 (442)
T PLN02208 79 DIPISMDNLLSEALDLTRDQVEAAVRAL-------RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHV--- 146 (442)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhC-------CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHcc---
Confidence 2211111334555678888889988877 89999999 5789999999999999999999987654 3322
Q ss_pred CCCCCCCcccCCCCCCC-cccCccccchhhhhcCCCCh-hHHHHHHHhhhhccCcEEEEechhhhcHHHHHHHHhhcCCC
Q 040467 162 LPHRDSDEFLLPDFPEA-SRIHVTQMTKFLRLADGSDS-LSVFFQKVLPQWMNADGILFNTVEELDKIGLMYFSRKLGRP 239 (387)
Q Consensus 162 ~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~ 239 (387)
+... ....+|++|.. +.++..+++.+ . .... +........+....++++++||+.+||+.+++++++.++++
T Consensus 147 -~~~~-~~~~~pglp~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~ 220 (442)
T PLN02208 147 -PGGK-LGVPPPGYPSSKVLFRENDAHAL--A--TLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKK 220 (442)
T ss_pred -Cccc-cCCCCCCCCCcccccCHHHcCcc--c--ccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCC
Confidence 1111 01225666642 22444555532 1 1112 22222223345667899999999999999999999888789
Q ss_pred eEEeccccCCCCCCCCCCCCCCCChhhhccccCCCCCCeeEEEecCCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCC
Q 040467 240 VWPVGSLLLSTGSRAGAGKEYGISTELCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPPLGF 319 (387)
Q Consensus 240 ~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~ 319 (387)
++.|||+.+.... ....++++.+|||.++++++|||||||+...+.+++.+++.+++..+.+++|+++.+.+.
T Consensus 221 v~~vGpl~~~~~~-------~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~ 293 (442)
T PLN02208 221 VLLTGPMFPEPDT-------SKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGS 293 (442)
T ss_pred EEEEeecccCcCC-------CCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCcc
Confidence 9999999864310 123578899999999888999999999999999999999999888889999988754210
Q ss_pred CCCcchhcccCCchhHHHHhccCCCcEEeccccCHHHhhCccCcceeeeccChhHHHHHHHcCCcccC
Q 040467 320 DMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l~ 387 (387)
... . ..+|++|.++++ .+|+++.+|+||.+||+|++|++|||||||||++||+++|||||+
T Consensus 294 ---~~~-~-~~lp~~f~~r~~--~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~ 354 (442)
T PLN02208 294 ---STV-Q-EGLPEGFEERVK--GRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVL 354 (442)
T ss_pred ---cch-h-hhCCHHHHHHHh--cCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEe
Confidence 000 1 248899999998 899999999999999999999999999999999999999999986
No 4
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=4.2e-55 Score=405.55 Aligned_cols=352 Identities=26% Similarity=0.404 Sum_probs=266.5
Q ss_pred CCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCC
Q 040467 2 AQRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSD 81 (387)
Q Consensus 2 ~~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 81 (387)
|..+.||+++|+|++||++||+.||+.|++ +|++|||++++.+..++++.+....+++|..++++ ..++++.+.+...
T Consensus 1 ~~~~~HVvlvPfpaqGHi~PmL~LAk~Las-~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP-~~dGLP~g~e~~~ 78 (446)
T PLN00414 1 MGSKFHAFMYPWFGFGHMIPYLHLANKLAE-KGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLP-PVDGLPFGAETAS 78 (446)
T ss_pred CCCCCEEEEecCcccchHHHHHHHHHHHHh-CCCEEEEEeCCchhhhhcccccCCCceEEEEecCC-CcCCCCCcccccc
Confidence 456789999999999999999999999999 99999999999988777665432245888777654 2457776644332
Q ss_pred CCCCCchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHhCCceEEEcchhHHHHHHHHHhhhc
Q 040467 82 SLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSLWLN 161 (387)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~ 161 (387)
+........+..+++.+.+.++++++.. +|||||+|. +.|+..+|+++|||++.++++++...+.+.++...
T Consensus 79 ~l~~~~~~~~~~a~~~l~~~l~~~L~~~-------~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~~ 150 (446)
T PLN00414 79 DLPNSTKKPIFDAMDLLRDQIEAKVRAL-------KPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRAE 150 (446)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhcC-------CCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHhh
Confidence 2221112345566677788888888765 789999995 78999999999999999999999888776642210
Q ss_pred CCCCCCCcccCCCCCCC-cccCccc--cchhhhhcCCCChhHHHHHHHhhhhccCcEEEEechhhhcHHHHHHHHhhcCC
Q 040467 162 LPHRDSDEFLLPDFPEA-SRIHVTQ--MTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKIGLMYFSRKLGR 238 (387)
Q Consensus 162 ~p~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~ 238 (387)
.....|++|.. +.++..+ ++.++.. ....+.+..+....++++++||+.+||+.++++++..+++
T Consensus 151 ------~~~~~pg~p~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~ 218 (446)
T PLN00414 151 ------LGFPPPDYPLSKVALRGHDANVCSLFAN------SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQR 218 (446)
T ss_pred ------cCCCCCCCCCCcCcCchhhcccchhhcc------cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCC
Confidence 01124555531 1112111 1121110 1223444445667789999999999999999999886667
Q ss_pred CeEEeccccCCCCCCCCCCCCCCCChhhhccccCCCCCCeeEEEecCCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCC
Q 040467 239 PVWPVGSLLLSTGSRAGAGKEYGISTELCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPPLG 318 (387)
Q Consensus 239 ~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~ 318 (387)
+++.|||+.+..... . ....+++|.+|||.+++++||||||||....+.+++.++..+|+..+.+|+|++..+.+
T Consensus 219 ~v~~VGPl~~~~~~~----~-~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~ 293 (446)
T PLN00414 219 KVLLTGPMLPEPQNK----S-GKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKG 293 (446)
T ss_pred CeEEEcccCCCcccc----c-CcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCC
Confidence 899999997543100 0 01134579999999999999999999999999999999999999999999999976421
Q ss_pred CCCCcchhcccCCchhHHHHhccCCCcEEeccccCHHHhhCccCcceeeeccChhHHHHHHHcCCcccC
Q 040467 319 FDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l~ 387 (387)
.+ + .. +.+|++|.++++ .+++++.+|+||.+||+|+++++|||||||||+.||+++|||||+
T Consensus 294 ~~---~-~~-~~lp~~f~~r~~--~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~ 355 (446)
T PLN00414 294 SS---T-VQ-EALPEGFEERVK--GRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVF 355 (446)
T ss_pred cc---c-ch-hhCChhHHHHhc--CCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEe
Confidence 00 0 11 348999999998 889999999999999999999999999999999999999999986
No 5
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=6.7e-55 Score=406.60 Aligned_cols=371 Identities=33% Similarity=0.588 Sum_probs=274.7
Q ss_pred CCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCC----CCCeeEEeccCCCCCCCCCCCC
Q 040467 2 AQRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQ----NSSIHLREIPFDGIAHDLPPCT 77 (387)
Q Consensus 2 ~~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~ 77 (387)
|.++.||+++|+|++||++||+.||+.|++ +|+.|||++++.+..++.+.... ...|+|+.+|++...++++++.
T Consensus 5 ~~~~~Hvv~vPfpaqGHi~P~l~LAk~La~-~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~ 83 (491)
T PLN02534 5 KAKQLHFVLIPLMAQGHMIPMIDMARLLAE-RGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGC 83 (491)
T ss_pred cCCCCEEEEECCCCcchHHHHHHHHHHHHh-CCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCc
Confidence 455689999999999999999999999999 99999999999987766553211 1248999999774446887765
Q ss_pred CCCCCCCC-CchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHhCCceEEEcchhHHHHHHHH
Q 040467 78 ENSDSLPF-HLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFY 156 (387)
Q Consensus 78 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~ 156 (387)
+.....+. .....+...++.+.+.+++++++. .. +++|||+|.++.|+..+|+++|||.+.+++++++......
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~----~~-pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~ 158 (491)
T PLN02534 84 ENLDTLPSRDLLRKFYDAVDKLQQPLERFLEQA----KP-PPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSH 158 (491)
T ss_pred cccccCCcHHHHHHHHHHHHHhHHHHHHHHHhc----CC-CCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHH
Confidence 54333332 122445556667778888888753 12 6799999999999999999999999999999988877654
Q ss_pred HhhhcCCCC----CCCcccCCCCCCCcccCccccchhhhhcCCCChhHHHHHHHhhhhccCcEEEEechhhhcHHHHHHH
Q 040467 157 SLWLNLPHR----DSDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKIGLMYF 232 (387)
Q Consensus 157 ~~~~~~p~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~ 232 (387)
+.....+.. ..+...+|++|....++..+++.++.... ...............++++++||+.+||+.+++.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~---~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l 235 (491)
T PLN02534 159 NIRLHNAHLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSLP---DLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAY 235 (491)
T ss_pred HHHHhcccccCCCCCceeecCCCCccccccHHHCChhhcCcc---cHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHH
Confidence 333222211 12234567777544566666766543211 12222222222334577999999999999999999
Q ss_pred HhhcCCCeEEeccccCCCCCCC---CCCCCCCCChhhhccccCCCCCCeeEEEecCCCcCCCHHHHHHHHHHHHhCCCcE
Q 040467 233 SRKLGRPVWPVGSLLLSTGSRA---GAGKEYGISTELCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGKNF 309 (387)
Q Consensus 233 ~~~~~~~~~~vGp~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~a~~~~~~~~ 309 (387)
+..++++++.|||+.+...... .++......+.+|.+|||.++++++|||||||......+++.+++.+|+..+++|
T Consensus 236 ~~~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~f 315 (491)
T PLN02534 236 EKAIKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPF 315 (491)
T ss_pred HhhcCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCE
Confidence 8877788999999975321100 0011001123569999999988899999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEeccccCHHHhhCccCcceeeeccChhHHHHHHHcCCcccC
Q 040467 310 IWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 310 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l~ 387 (387)
||+++.+... .+... ..+|++|.++++ +.++++.+|+||.+||+|+++++|||||||||++||+++|||||+
T Consensus 316 lW~~r~~~~~---~~~~~-~~~p~gf~~~~~--~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~ 387 (491)
T PLN02534 316 IWVIKTGEKH---SELEE-WLVKENFEERIK--GRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMIT 387 (491)
T ss_pred EEEEecCccc---cchhh-hcCchhhHHhhc--cCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEe
Confidence 9999853100 00111 126789998887 889999999999999999999999999999999999999999986
No 6
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=6.6e-55 Score=401.47 Aligned_cols=355 Identities=27% Similarity=0.422 Sum_probs=269.1
Q ss_pred CCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCC--eeEEeccCCCCCCCCCCCCC
Q 040467 1 MAQRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSS--IHLREIPFDGIAHDLPPCTE 78 (387)
Q Consensus 1 ~~~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~ 78 (387)
|-..|.||+++|+|++||++||+.||+.|++ +|+.|||++++.+...+.+......+ +.+..+|. .++++.+.+
T Consensus 1 ~~~~~~Hvvl~P~paqGHi~P~l~LAk~La~-~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~---~~glp~g~e 76 (453)
T PLN02764 1 MGGLKFHVLMYPWFATGHMTPFLFLANKLAE-KGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPH---VDGLPVGTE 76 (453)
T ss_pred CCCCCcEEEEECCcccccHHHHHHHHHHHHh-CCCEEEEEeCcchhhhhcccccCCCCceEEEEECCC---cCCCCCccc
Confidence 3456899999999999999999999999999 99999999999887766653111123 55555553 357776655
Q ss_pred CCCCCCCCchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHhCCceEEEcchhHHHHHHHHHh
Q 040467 79 NSDSLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSL 158 (387)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~ 158 (387)
...+.+......+..+++.+.+.+++++++. ++||||+|. ..|+..+|+++|||.+.++++++..++.+..+
T Consensus 77 ~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~-------~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~~ 148 (453)
T PLN02764 77 TVSEIPVTSADLLMSAMDLTRDQVEVVVRAV-------EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLVP 148 (453)
T ss_pred ccccCChhHHHHHHHHHHHhHHHHHHHHHhC-------CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhcc
Confidence 4433332223456666677788899999887 789999995 88999999999999999999999887776531
Q ss_pred hhcCCCCCCCcccCCCCCCC-cccCccccchhhhh-c-CCCChhHHHHHHHhhhhccCcEEEEechhhhcHHHHHHHHhh
Q 040467 159 WLNLPHRDSDEFLLPDFPEA-SRIHVTQMTKFLRL-A-DGSDSLSVFFQKVLPQWMNADGILFNTVEELDKIGLMYFSRK 235 (387)
Q Consensus 159 ~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~ 235 (387)
.... + ...|++|.. ..++.++++.+... . .....+.....+.......++++++||+.+||+.++++++..
T Consensus 149 ~~~~----~--~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~ 222 (453)
T PLN02764 149 GGEL----G--VPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKH 222 (453)
T ss_pred cccC----C--CCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhh
Confidence 1000 1 124666631 12444555543221 1 111123334444445677888999999999999999999875
Q ss_pred cCCCeEEeccccCCCCCCCCCCCCCCCChhhhccccCCCCCCeeEEEecCCCcCCCHHHHHHHHHHHHhCCCcEEEEEcC
Q 040467 236 LGRPVWPVGSLLLSTGSRAGAGKEYGISTELCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKP 315 (387)
Q Consensus 236 ~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~a~~~~~~~~l~~~~~ 315 (387)
.+++++.|||+.+.... ....+.+|.+|||++++++||||||||+...+.+++.++..+|+..+.+++|+++.
T Consensus 223 ~~~~v~~VGPL~~~~~~-------~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~ 295 (453)
T PLN02764 223 CRKKVLLTGPVFPEPDK-------TRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKP 295 (453)
T ss_pred cCCcEEEeccCccCccc-------cccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 55789999999754310 01135689999999999999999999999999999999999999999999999985
Q ss_pred CCCCCCCcchhcccCCchhHHHHhccCCCcEEeccccCHHHhhCccCcceeeeccChhHHHHHHHcCCcccC
Q 040467 316 PLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l~ 387 (387)
+.+.+ +. . ..+|++|.++++ .+++++.+|+||.+||+|++|++|||||||||+.||+++|||||+
T Consensus 296 ~~~~~---~~-~-~~lp~~f~~r~~--grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~ 360 (453)
T PLN02764 296 PRGSS---TI-Q-EALPEGFEERVK--GRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVL 360 (453)
T ss_pred CCCCc---ch-h-hhCCcchHhhhc--cCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEe
Confidence 42110 00 1 348999999998 889999999999999999999999999999999999999999985
No 7
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=2.4e-54 Score=407.32 Aligned_cols=368 Identities=36% Similarity=0.681 Sum_probs=267.2
Q ss_pred CCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCC----C--CCeeEEeccCCCCCCCCC
Q 040467 1 MAQRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQ----N--SSIHLREIPFDGIAHDLP 74 (387)
Q Consensus 1 ~~~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~----~--~~i~~~~~~~~~~~~~~~ 74 (387)
|..++.||+++|+|++||++|++.||++|++ ||++|||++++.+.+++++.+.. . ..+.+..++++...++++
T Consensus 1 ~~~~~~hVvlvp~pa~GHi~P~L~LAk~L~~-rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP 79 (482)
T PLN03007 1 MNHEKLHILFFPFMAHGHMIPTLDMAKLFSS-RGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLP 79 (482)
T ss_pred CCCCCcEEEEECCCccccHHHHHHHHHHHHh-CCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCC
Confidence 4566789999999999999999999999999 99999999999998877765431 0 123455555442223566
Q ss_pred CCCCCCCCCC---C----CchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHhCCceEEEcch
Q 040467 75 PCTENSDSLP---F----HLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGG 147 (387)
Q Consensus 75 ~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~lgiP~v~~~~~ 147 (387)
++.+.....+ . .....+......+.+.+++++++. +|||||+|.++.|+..+|+++|||++.++++
T Consensus 80 ~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-------~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~ 152 (482)
T PLN03007 80 EGCENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETT-------RPDCLVADMFFPWATEAAEKFGVPRLVFHGT 152 (482)
T ss_pred CCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCEEEECCcchhHHHHHHHhCCCeEEeecc
Confidence 6544332110 1 112233344456666777777655 7999999999999999999999999999998
Q ss_pred hHHHHHHHHHhhhcCCCCC----CCcccCCCCCCCcccCccccchhhhhcCCCChhHHHHHHHhhhhccCcEEEEechhh
Q 040467 148 GSFGFACFYSLWLNLPHRD----SDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEE 223 (387)
Q Consensus 148 ~~~~~~~~~~~~~~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (387)
+++..........+.+... .+...+|++|..+.++..+++.. .....+...+.........++++++||+.+
T Consensus 153 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~ 228 (482)
T PLN03007 153 GYFSLCASYCIRVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDA----DEESPMGKFMKEVRESEVKSFGVLVNSFYE 228 (482)
T ss_pred cHHHHHHHHHHHhcccccccCCCCceeeCCCCCCccccCHHhcCCC----CCchhHHHHHHHHHhhcccCCEEEEECHHH
Confidence 8877665553332222111 11233677764333333333321 111223344444555667788999999999
Q ss_pred hcHHHHHHHHhhcCCCeEEeccccCCCCCC---CCCCCCCCCChhhhccccCCCCCCeeEEEecCCCcCCCHHHHHHHHH
Q 040467 224 LDKIGLMYFSRKLGRPVWPVGSLLLSTGSR---AGAGKEYGISTELCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAM 300 (387)
Q Consensus 224 le~~~~~~~~~~~~~~~~~vGp~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~ 300 (387)
||.++.+.+++....++++|||+.+..... ..+++..+..+.+|.+||++++++++|||||||+...+.+++.+++.
T Consensus 229 le~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~ 308 (482)
T PLN03007 229 LESAYADFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAA 308 (482)
T ss_pred HHHHHHHHHHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHH
Confidence 999999998877667899999976532110 00011112235779999999988999999999999999999999999
Q ss_pred HHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEeccccCHHHhhCccCcceeeeccChhHHHHHHH
Q 040467 301 ALEACGKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALS 380 (387)
Q Consensus 301 a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~lL~~~~~~~~v~HGG~~s~~eal~ 380 (387)
+|+..+++|||+++.+.. ..... ..+|+++.+++. +.|+++.+|+||.+||+|+++++|||||||||+.||++
T Consensus 309 ~l~~~~~~flw~~~~~~~----~~~~~-~~lp~~~~~r~~--~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~ 381 (482)
T PLN03007 309 GLEGSGQNFIWVVRKNEN----QGEKE-EWLPEGFEERTK--GKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVA 381 (482)
T ss_pred HHHHCCCCEEEEEecCCc----ccchh-hcCCHHHHHHhc--cCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHH
Confidence 999999999999986420 00001 237889999998 99999999999999999999999999999999999999
Q ss_pred cCCcccC
Q 040467 381 HRVPIIG 387 (387)
Q Consensus 381 ~GvP~l~ 387 (387)
+|||||+
T Consensus 382 ~GVP~v~ 388 (482)
T PLN03007 382 AGLPMVT 388 (482)
T ss_pred cCCCeee
Confidence 9999986
No 8
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=5.2e-54 Score=396.88 Aligned_cols=349 Identities=25% Similarity=0.473 Sum_probs=263.5
Q ss_pred CCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCC-CC
Q 040467 1 MAQRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCT-EN 79 (387)
Q Consensus 1 ~~~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~ 79 (387)
|..++.||+++|+|++||++||++||+.|+. +|+.|||++++.+.+.+..... .+|+|..+| ++++++. +.
T Consensus 1 ~~~~~~hvv~~P~paqGHi~P~l~lAk~La~-~G~~vT~v~t~~~~~~~~~~~~--~~i~~~~ip-----dglp~~~~~~ 72 (449)
T PLN02173 1 MEKMRGHVLAVPFPSQGHITPIRQFCKRLHS-KGFKTTHTLTTFIFNTIHLDPS--SPISIATIS-----DGYDQGGFSS 72 (449)
T ss_pred CCCCCcEEEEecCcccccHHHHHHHHHHHHc-CCCEEEEEECCchhhhcccCCC--CCEEEEEcC-----CCCCCccccc
Confidence 3445679999999999999999999999999 9999999999987666543222 569999886 4666532 22
Q ss_pred CCCCCCCchhHHHHHH-hhhhHHHHHHHHhhhhccCCCCC-eEEEeCCCchhhHHHHHHhCCceEEEcchhHHHHHHHHH
Q 040467 80 SDSLPFHLFPNFFEST-LSFKPHFRKLINGLIDEQNGHKP-VCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYS 157 (387)
Q Consensus 80 ~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~p-D~vV~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~ 157 (387)
.. ....++..+ +.+.+.++++++++..+ + +| +|||+|.+..|+..+|+++|||.+.+++++++....+.+
T Consensus 73 ~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~--~-~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~ 144 (449)
T PLN02173 73 AG-----SVPEYLQNFKTFGSKTVADIIRKHQST--D-NPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL 144 (449)
T ss_pred cc-----CHHHHHHHHHHhhhHHHHHHHHHhhcc--C-CCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh
Confidence 11 223455444 46788888888775321 2 45 999999999999999999999999999988877765543
Q ss_pred hhhcCCCCCCCcccCCCCCCCcccCccccchhhhhcCCCChhHHHHHHHhhhhccCcEEEEechhhhcHHHHHHHHhhcC
Q 040467 158 LWLNLPHRDSDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKIGLMYFSRKLG 237 (387)
Q Consensus 158 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~ 237 (387)
..... ......+|++|. ++.++++.++............+.+......+++++++||+.+||+.++++++..
T Consensus 145 ~~~~~---~~~~~~~pg~p~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~-- 216 (449)
T PLN02173 145 SYINN---GSLTLPIKDLPL---LELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV-- 216 (449)
T ss_pred HHhcc---CCccCCCCCCCC---CChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc--
Confidence 22110 011234677766 6777887766432222233344444456677889999999999999999998754
Q ss_pred CCeEEeccccCCCC----CCCCCCC--CCC--CChhhhccccCCCCCCeeEEEecCCCcCCCHHHHHHHHHHHHhCCCcE
Q 040467 238 RPVWPVGSLLLSTG----SRAGAGK--EYG--ISTELCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGKNF 309 (387)
Q Consensus 238 ~~~~~vGp~~~~~~----~~~~~~~--~~~--~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~a~~~~~~~~ 309 (387)
++++.|||+.+... ....++. ..+ ..+++|.+||+.++++++|||||||+...+.+++++++.+| .+.+|
T Consensus 217 ~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~f 294 (449)
T PLN02173 217 CPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSY 294 (449)
T ss_pred CCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCE
Confidence 47999999975310 0000000 111 22456999999998889999999999999999999999999 67889
Q ss_pred EEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEeccccCHHHhhCccCcceeeeccChhHHHHHHHcCCcccC
Q 040467 310 IWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 310 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l~ 387 (387)
||++..+. . +.+|+++.++++ ++|+++++|+||.+||+|++|++|||||||||++||+++|||||+
T Consensus 295 lWvvr~~~---------~-~~lp~~~~~~~~--~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~ 360 (449)
T PLN02173 295 LWVVRASE---------E-SKLPPGFLETVD--KDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVA 360 (449)
T ss_pred EEEEeccc---------h-hcccchHHHhhc--CCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEe
Confidence 99997542 0 347888988887 788999999999999999999999999999999999999999986
No 9
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=1.3e-53 Score=396.33 Aligned_cols=356 Identities=27% Similarity=0.482 Sum_probs=265.7
Q ss_pred CCCccEEEEEcCCCcccHHHHHHHHHHHH-hCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCC
Q 040467 2 AQRKENIVMFPLMAQGHTIPFLALALHLE-NTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENS 80 (387)
Q Consensus 2 ~~~~~~il~~~~~~~GH~~P~l~la~~L~-~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (387)
-..|.||+++|+|++||++|++.||+.|+ + +|++|||++++.+..++.+......++++..+|.+ ..+++++...
T Consensus 2 ~~~~pHVvl~P~paqGHi~P~l~LAk~La~~-~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p-~~~glp~~~~-- 77 (481)
T PLN02992 2 HITKPHAAMFSSPGMGHVIPVIELGKRLSAN-HGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSP-DISGLVDPSA-- 77 (481)
T ss_pred CCCCcEEEEeCCcccchHHHHHHHHHHHHhC-CCcEEEEEeCCCchhhhhhccccCCCceEEECCCc-cccCCCCCCc--
Confidence 34578999999999999999999999998 7 99999999999887665332211136889998864 2334432110
Q ss_pred CCCCCCchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHhCCceEEEcchhHHHHHHHHHhhh
Q 040467 81 DSLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSLWL 160 (387)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~ 160 (387)
.....+......+.+.++++++++. . +|+|||+|.++.|+..+|+++|||++.++++++..++...+.+.
T Consensus 78 -----~~~~~~~~~~~~~~~~~~~~l~~~~----~-~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~ 147 (481)
T PLN02992 78 -----HVVTKIGVIMREAVPTLRSKIAEMH----Q-KPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPT 147 (481)
T ss_pred -----cHHHHHHHHHHHhHHHHHHHHHhcC----C-CCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhh
Confidence 1112344445667788888887651 1 68999999999999999999999999999999988766554321
Q ss_pred c-CCCCC-----CCcccCCCCCCCcccCccccchhhhhcCCCChhHHHHHHHhhhhccCcEEEEechhhhcHHHHHHHHh
Q 040467 161 N-LPHRD-----SDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKIGLMYFSR 234 (387)
Q Consensus 161 ~-~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~ 234 (387)
. .+... .+...+|+++. ++..+++..+... .......+.+.......++++++||+.+||..++++++.
T Consensus 148 ~~~~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~ 222 (481)
T PLN02992 148 LDKDIKEEHTVQRKPLAMPGCEP---VRFEDTLDAYLVP--DEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQD 222 (481)
T ss_pred hccccccccccCCCCcccCCCCc---cCHHHhhHhhcCC--CcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhh
Confidence 1 11110 11234566655 6666666544322 122334444555566788999999999999999999875
Q ss_pred h--c----CCCeEEeccccCCCCCCCCCCCCCCCChhhhccccCCCCCCeeEEEecCCCcCCCHHHHHHHHHHHHhCCCc
Q 040467 235 K--L----GRPVWPVGSLLLSTGSRAGAGKEYGISTELCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGKN 308 (387)
Q Consensus 235 ~--~----~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~a~~~~~~~ 308 (387)
. + .++++.|||+.+.... ...+++|.+||+++++++||||||||+...+.+++++++.+|+..+++
T Consensus 223 ~~~~~~~~~~~v~~VGPl~~~~~~--------~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~ 294 (481)
T PLN02992 223 PKLLGRVARVPVYPIGPLCRPIQS--------SKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQR 294 (481)
T ss_pred ccccccccCCceEEecCccCCcCC--------CcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCC
Confidence 2 1 2579999999864210 123567999999998889999999999999999999999999999999
Q ss_pred EEEEEcCCCCCC-------CC----cchhcccCCchhHHHHhccCCCcEEeccccCHHHhhCccCcceeeeccChhHHHH
Q 040467 309 FIWVVKPPLGFD-------MN----SEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLE 377 (387)
Q Consensus 309 ~l~~~~~~~~~~-------~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~lL~~~~~~~~v~HGG~~s~~e 377 (387)
|||+++.+.... .+ .+... ..+|++|.++++ .+++++.+|+||.+||+|+++++|||||||||+.|
T Consensus 295 flW~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~lp~~f~eR~~--~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~E 371 (481)
T PLN02992 295 FVWVVRPPVDGSACSAYFSANGGETRDNTP-EYLPEGFVSRTH--DRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLE 371 (481)
T ss_pred EEEEEeCCcccccccccccCcccccccchh-hhCCHHHHHHhc--CCCEEEeecCCHHHHhCCcccCeeEecCchhHHHH
Confidence 999997431000 00 00001 348899999999 99999999999999999999999999999999999
Q ss_pred HHHcCCcccC
Q 040467 378 ALSHRVPIIG 387 (387)
Q Consensus 378 al~~GvP~l~ 387 (387)
|+++|||||+
T Consensus 372 al~~GVP~l~ 381 (481)
T PLN02992 372 SVVGGVPMIA 381 (481)
T ss_pred HHHcCCCEEe
Confidence 9999999986
No 10
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=3.7e-53 Score=394.29 Aligned_cols=353 Identities=24% Similarity=0.443 Sum_probs=262.1
Q ss_pred CCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCC
Q 040467 2 AQRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSD 81 (387)
Q Consensus 2 ~~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 81 (387)
|..+.||+++|+|++||++||+.||+.|++ +|++|||++++.+.+++.+......+++|..+|. +++.+.
T Consensus 3 ~~~~~HVVlvPfPaqGHi~PmL~LAk~Las-~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp~-----g~~~~~---- 72 (448)
T PLN02562 3 VTQRPKIILVPYPAQGHVTPMLKLASAFLS-RGFEPVVITPEFIHRRISATLDPKLGITFMSISD-----GQDDDP---- 72 (448)
T ss_pred CCCCcEEEEEcCccccCHHHHHHHHHHHHh-CCCEEEEEeCcchhhhhhhccCCCCCEEEEECCC-----CCCCCc----
Confidence 445679999999999999999999999999 9999999999998877766422114689998873 333211
Q ss_pred CCCCCchhHHHHHHh-hhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHhCCceEEEcchhHHHHHHHHHhhh
Q 040467 82 SLPFHLFPNFFESTL-SFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSLWL 160 (387)
Q Consensus 82 ~~~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~ 160 (387)
+ ..+..+..++. .+.+.++++++++... . +++|||+|.+..|+..+|+++|||++.++++++...+...+.+.
T Consensus 73 --~-~~~~~l~~a~~~~~~~~l~~ll~~l~~~--~-pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~ 146 (448)
T PLN02562 73 --P-RDFFSIENSMENTMPPQLERLLHKLDED--G-EVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPE 146 (448)
T ss_pred --c-ccHHHHHHHHHHhchHHHHHHHHHhcCC--C-CcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHH
Confidence 1 12234555554 5788888888876321 1 34899999999999999999999999999998887776554321
Q ss_pred c-----CCCCC--C--Cc-ccCCCCCCCcccCccccchhhhhcCCCChhHHHHHHHhhhhccCcEEEEechhhhcHHHHH
Q 040467 161 N-----LPHRD--S--DE-FLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKIGLM 230 (387)
Q Consensus 161 ~-----~p~~~--~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~ 230 (387)
. .+..+ . +. ..+|++|. ++.++++.++..........+.+.+..+....++++++||+.+||+.+++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~Pg~~~---l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~ 223 (448)
T PLN02562 147 LVRTGLISETGCPRQLEKICVLPEQPL---LSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVK 223 (448)
T ss_pred HhhccccccccccccccccccCCCCCC---CChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHH
Confidence 1 11110 0 11 13566655 66777776654322122334445555566777889999999999999888
Q ss_pred HHHh----hcCCCeEEeccccCCCCCCCCCCCCCCCChhhhccccCCCCCCeeEEEecCCCc-CCCHHHHHHHHHHHHhC
Q 040467 231 YFSR----KLGRPVWPVGSLLLSTGSRAGAGKEYGISTELCKNWLDTKPCNSVIYVSFGSQN-TIAASQMMQLAMALEAC 305 (387)
Q Consensus 231 ~~~~----~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~-~~~~~~~~~~~~a~~~~ 305 (387)
.+.. ...++++.|||+....... .++......+.+|.+||++++++++|||||||+. ..+.+++++++.+|++.
T Consensus 224 ~~~~~~~~~~~~~v~~iGpl~~~~~~~-~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~ 302 (448)
T PLN02562 224 NHQASYNNGQNPQILQIGPLHNQEATT-ITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEAS 302 (448)
T ss_pred HHHhhhccccCCCEEEecCcccccccc-cCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHC
Confidence 7653 2347899999998653110 0001111234567899999988899999999986 67899999999999999
Q ss_pred CCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEeccccCHHHhhCccCcceeeeccChhHHHHHHHcCCcc
Q 040467 306 GKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHRVPI 385 (387)
Q Consensus 306 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~lL~~~~~~~~v~HGG~~s~~eal~~GvP~ 385 (387)
+++|||+++.+. . ..+|+++.+++ +.|+++++|+||.+||+|++|++|||||||||+.||+++||||
T Consensus 303 g~~fiW~~~~~~---------~-~~l~~~~~~~~---~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~ 369 (448)
T PLN02562 303 GRPFIWVLNPVW---------R-EGLPPGYVERV---SKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRL 369 (448)
T ss_pred CCCEEEEEcCCc---------h-hhCCHHHHHHh---ccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCE
Confidence 999999997532 0 23778887776 4577888999999999999999999999999999999999999
Q ss_pred cC
Q 040467 386 IG 387 (387)
Q Consensus 386 l~ 387 (387)
|+
T Consensus 370 l~ 371 (448)
T PLN02562 370 LC 371 (448)
T ss_pred Ee
Confidence 85
No 11
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=5.2e-53 Score=390.50 Aligned_cols=362 Identities=26% Similarity=0.485 Sum_probs=262.1
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCC--cEEEE--EeCCcchhhhh----hcCCCCCCeeEEeccCCCCCCCCC
Q 040467 3 QRKENIVMFPLMAQGHTIPFLALALHLENTNR--YTITF--VNTPSNLKKLK----SSLPQNSSIHLREIPFDGIAHDLP 74 (387)
Q Consensus 3 ~~~~~il~~~~~~~GH~~P~l~la~~L~~~rG--h~Vt~--~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~ 74 (387)
|.+.||+++|+|++||++||+.||+.|++ +| +.||+ ++++.+...+. ......++++|..+|.. ...+
T Consensus 1 ~~~~Hvvl~P~p~qGHi~P~l~LA~~La~-~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~---~~~~ 76 (451)
T PLN03004 1 MGEEAIVLYPAPPIGHLVSMVELGKTILS-KNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAV---TPYS 76 (451)
T ss_pred CCCcEEEEeCCcccchHHHHHHHHHHHHh-CCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCC---CCCC
Confidence 45789999999999999999999999999 98 45555 44444333222 11111146899988743 1111
Q ss_pred CCCCCCCCCCCCchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHhCCceEEEcchhHHHHHH
Q 040467 75 PCTENSDSLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFAC 154 (387)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~ 154 (387)
.... .. ......+......+.+.++++++++... . +++|||+|.+..|+..+|+++|||.+.++++++..++.
T Consensus 77 ~~~~--~~--~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~-pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~ 149 (451)
T PLN03004 77 SSST--SR--HHHESLLLEILCFSNPSVHRTLFSLSRN--F-NVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAF 149 (451)
T ss_pred Cccc--cc--cCHHHHHHHHHHhhhHHHHHHHHhcCCC--C-CceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHH
Confidence 1111 11 1111344455567777788888776321 1 35999999999999999999999999999999998888
Q ss_pred HHHhhhc---CCCCC-C--CcccCCCCCCCcccCccccchhhhhcCCCChhHHHHHHHhhhhccCcEEEEechhhhcHHH
Q 040467 155 FYSLWLN---LPHRD-S--DEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKIG 228 (387)
Q Consensus 155 ~~~~~~~---~p~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~ 228 (387)
+.+.+.. .+... . +...+|++|. ++..+++.++.... ......+.........++++++||+++||+.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~v~iPg~p~---l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~ 224 (451)
T PLN03004 150 SFYLPTIDETTPGKNLKDIPTVHIPGVPP---MKGSDMPKAVLERD--DEVYDVFIMFGKQLSKSSGIIINTFDALENRA 224 (451)
T ss_pred HHHHHhccccccccccccCCeecCCCCCC---CChHHCchhhcCCc--hHHHHHHHHHHHhhcccCeeeeeeHHHhHHHH
Confidence 7764321 11111 1 1235677776 77778877664321 23344455555667778899999999999999
Q ss_pred HHHHHhhcC-CCeEEeccccCCCCCCCCCCCCCCCChhhhccccCCCCCCeeEEEecCCCcCCCHHHHHHHHHHHHhCCC
Q 040467 229 LMYFSRKLG-RPVWPVGSLLLSTGSRAGAGKEYGISTELCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGK 307 (387)
Q Consensus 229 ~~~~~~~~~-~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~a~~~~~~ 307 (387)
++.++..+. ++++.|||+.+...... .. ...+.+|.+|||+++++++|||||||+...+.+++++++.+|+..++
T Consensus 225 l~~l~~~~~~~~v~~vGPl~~~~~~~~---~~-~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~ 300 (451)
T PLN03004 225 IKAITEELCFRNIYPIGPLIVNGRIED---RN-DNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQ 300 (451)
T ss_pred HHHHHhcCCCCCEEEEeeeccCccccc---cc-cchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCC
Confidence 999987643 68999999975321000 00 11245699999999889999999999999999999999999999999
Q ss_pred cEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEeccccCHHHhhCccCcceeeeccChhHHHHHHHcCCcccC
Q 040467 308 NFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 308 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l~ 387 (387)
+|||+++.+...+....... ..+|++|.++++ .+|+++.+|+||.+||+|+++++|||||||||+.||+++|||||+
T Consensus 301 ~FlW~~r~~~~~~~~~~~~~-~~lp~gf~er~~--~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~ 377 (451)
T PLN03004 301 RFLWVVRNPPELEKTELDLK-SLLPEGFLSRTE--DKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVA 377 (451)
T ss_pred CEEEEEcCCccccccccchh-hhCChHHHHhcc--CCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEe
Confidence 99999985420000000001 237899999998 899999999999999999999999999999999999999999986
No 12
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=8.6e-53 Score=390.66 Aligned_cols=352 Identities=27% Similarity=0.489 Sum_probs=256.1
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCC
Q 040467 4 RKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSL 83 (387)
Q Consensus 4 ~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 83 (387)
++.||+++|+|++||++||+.||+.|+. +|+.|||++++.+..... ... .+++|..+| ++++++.... .
T Consensus 6 ~~~HVvlvPfpaqGHi~P~l~LAk~La~-~G~~VT~v~T~~n~~~~~-~~~--~~i~~~~ip-----~glp~~~~~~--~ 74 (451)
T PLN02410 6 ARRRVVLVPVPAQGHISPMMQLAKTLHL-KGFSITIAQTKFNYFSPS-DDF--TDFQFVTIP-----ESLPESDFKN--L 74 (451)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHHc-CCCEEEEEeCcccccccc-cCC--CCeEEEeCC-----CCCCcccccc--c
Confidence 4679999999999999999999999999 999999999987753211 111 468888876 4565531111 0
Q ss_pred CCCchhHHHHHH-hhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHhCCceEEEcchhHHHHHHHHHhhhc-
Q 040467 84 PFHLFPNFFEST-LSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSLWLN- 161 (387)
Q Consensus 84 ~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~- 161 (387)
....+...+ +.+.+.++++++++..+... +++|||+|.+..|+..+|+++|||.+.++++++..++.+.++...
T Consensus 75 ---~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~-p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~ 150 (451)
T PLN02410 75 ---GPIEFLHKLNKECQVSFKDCLGQLVLQQGN-EIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLY 150 (451)
T ss_pred ---CHHHHHHHHHHHhHHHHHHHHHHHHhccCC-CcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHH
Confidence 112333333 46677788888775322122 569999999999999999999999999999999888766543211
Q ss_pred -----CCCCC---CCcccCCCCCCCcccCccccchhhhhcCCCChhHHHHHHHhhhhccCcEEEEechhhhcHHHHHHHH
Q 040467 162 -----LPHRD---SDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKIGLMYFS 233 (387)
Q Consensus 162 -----~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~ 233 (387)
.+... .+...+|+++. ++..+++.+... ....+...+... .....++++++||+++||+.++++++
T Consensus 151 ~~~~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~~~~--~~~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~~~~~~l~ 224 (451)
T PLN02410 151 ANNVLAPLKEPKGQQNELVPEFHP---LRCKDFPVSHWA--SLESIMELYRNT-VDKRTASSVIINTASCLESSSLSRLQ 224 (451)
T ss_pred hccCCCCccccccCccccCCCCCC---CChHHCcchhcC--CcHHHHHHHHHH-hhcccCCEEEEeChHHhhHHHHHHHH
Confidence 12111 12234666655 555555543321 111222223222 23467889999999999999999998
Q ss_pred hhcCCCeEEeccccCCCCCCCCCCCCCCCChhhhccccCCCCCCeeEEEecCCCcCCCHHHHHHHHHHHHhCCCcEEEEE
Q 040467 234 RKLGRPVWPVGSLLLSTGSRAGAGKEYGISTELCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVV 313 (387)
Q Consensus 234 ~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~a~~~~~~~~l~~~ 313 (387)
...+++++.|||+...... ....+..+.+|.+|||++++++||||||||....+.+++++++.+|+..+++|||++
T Consensus 225 ~~~~~~v~~vGpl~~~~~~----~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~ 300 (451)
T PLN02410 225 QQLQIPVYPIGPLHLVASA----PTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVI 300 (451)
T ss_pred hccCCCEEEecccccccCC----CccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 8777799999999754310 011122345689999999888999999999999999999999999999999999999
Q ss_pred cCCCCCCCCcchhcccCCchhHHHHhccCCCcEEeccccCHHHhhCccCcceeeeccChhHHHHHHHcCCcccC
Q 040467 314 KPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l~ 387 (387)
+.+.. ...+. . ..+|++|.++++ .|.++++|+||.+||+|+++++|||||||||+.||+++|||||+
T Consensus 301 r~~~~--~~~~~-~-~~lp~~f~er~~---~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~ 367 (451)
T PLN02410 301 RPGSV--RGSEW-I-ESLPKEFSKIIS---GRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMIC 367 (451)
T ss_pred ccCcc--cccch-h-hcCChhHHHhcc---CCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEe
Confidence 84310 00000 0 237899999885 45567799999999999999999999999999999999999986
No 13
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=3e-52 Score=385.01 Aligned_cols=354 Identities=29% Similarity=0.491 Sum_probs=263.3
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCC-CcEEEEEeCCcchhhhh--hcCC---CCCCeeEEeccCCCCCCCCC-C
Q 040467 3 QRKENIVMFPLMAQGHTIPFLALALHLENTN-RYTITFVNTPSNLKKLK--SSLP---QNSSIHLREIPFDGIAHDLP-P 75 (387)
Q Consensus 3 ~~~~~il~~~~~~~GH~~P~l~la~~L~~~r-Gh~Vt~~~~~~~~~~~~--~~~~---~~~~i~~~~~~~~~~~~~~~-~ 75 (387)
|.+.||+++|+|++||++||+.||+.|++ + |..|||++++.+...+. .... ...+|++..+|... .++++ .
T Consensus 1 ~~~pHvvl~P~p~qGHi~P~l~LAk~La~-~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~-~~~l~~~ 78 (470)
T PLN03015 1 MDQPHALLVASPGLGHLIPILELGNRLSS-VLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVD-VDNLVEP 78 (470)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHh-CCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCc-cccCCCC
Confidence 45679999999999999999999999998 6 99999998876654431 1111 01258999998542 12331 1
Q ss_pred CCCCCCCCCCCchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHhCCc-eEEEcchhHHHHHH
Q 040467 76 CTENSDSLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIF-NALFVGGGSFGFAC 154 (387)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~lgiP-~v~~~~~~~~~~~~ 154 (387)
+ ......++.+++.+.+.++++++++. . +++|||+|.+..|+..+|+++||| .+.++++++.....
T Consensus 79 ~--------~~~~~~~~~~~~~~~~~~~~~l~~l~----~-~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~ 145 (470)
T PLN03015 79 D--------ATIFTKMVVKMRAMKPAVRDAVKSMK----R-KPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAV 145 (470)
T ss_pred C--------ccHHHHHHHHHHhchHHHHHHHHhcC----C-CCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHH
Confidence 1 01224566677788889999998763 1 579999999999999999999999 57787888777655
Q ss_pred HHHhhhc---CCCC--C-CCcccCCCCCCCcccCccccchhhhhcCCCChhHHHHHHHhhhhccCcEEEEechhhhcHHH
Q 040467 155 FYSLWLN---LPHR--D-SDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKIG 228 (387)
Q Consensus 155 ~~~~~~~---~p~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~ 228 (387)
+.+.+.. .+.. . .+...+|++|. ++..+++..+.... ......+.+.......++++++||+.+||+.+
T Consensus 146 ~~~l~~~~~~~~~~~~~~~~~~~vPg~p~---l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~ 220 (470)
T PLN03015 146 MVYLPVLDTVVEGEYVDIKEPLKIPGCKP---VGPKELMETMLDRS--DQQYKECVRSGLEVPMSDGVLVNTWEELQGNT 220 (470)
T ss_pred HHhhhhhhcccccccCCCCCeeeCCCCCC---CChHHCCHhhcCCC--cHHHHHHHHHHHhcccCCEEEEechHHHhHHH
Confidence 5543211 1110 0 12244677776 77778876554321 12222333444457789999999999999999
Q ss_pred HHHHHhhc------CCCeEEeccccCCCCCCCCCCCCCCCChhhhccccCCCCCCeeEEEecCCCcCCCHHHHHHHHHHH
Q 040467 229 LMYFSRKL------GRPVWPVGSLLLSTGSRAGAGKEYGISTELCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMAL 302 (387)
Q Consensus 229 ~~~~~~~~------~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~a~ 302 (387)
++.+++.+ .++++.|||+...... ...+++|.+|||++++++||||||||+...+.+++++++.+|
T Consensus 221 ~~~l~~~~~~~~~~~~~v~~VGPl~~~~~~--------~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl 292 (470)
T PLN03015 221 LAALREDMELNRVMKVPVYPIGPIVRTNVH--------VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGL 292 (470)
T ss_pred HHHHHhhcccccccCCceEEecCCCCCccc--------ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHH
Confidence 99998752 2569999999853210 112457999999998899999999999999999999999999
Q ss_pred HhCCCcEEEEEcCCCCC-C-C--CcchhcccCCchhHHHHhccCCCcEEeccccCHHHhhCccCcceeeeccChhHHHHH
Q 040467 303 EACGKNFIWVVKPPLGF-D-M--NSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEA 378 (387)
Q Consensus 303 ~~~~~~~l~~~~~~~~~-~-~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~lL~~~~~~~~v~HGG~~s~~ea 378 (387)
+..+++|||+++.+... + . ..+... +.+|++|.++++ .+++++.+|+||.+||+|+++++|||||||||+.||
T Consensus 293 ~~s~~~FlWv~r~~~~~~~~~~~~~~~~~-~~lp~~f~er~~--~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Ea 369 (470)
T PLN03015 293 ELSGQRFVWVLRRPASYLGASSSDDDQVS-ASLPEGFLDRTR--GVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLES 369 (470)
T ss_pred HhCCCcEEEEEecCccccccccccccchh-hcCChHHHHhhc--cCceEEEecCCHHHHhccCccCeEEecCCchhHHHH
Confidence 99999999999743210 0 0 000011 348899999998 888999999999999999999999999999999999
Q ss_pred HHcCCcccC
Q 040467 379 LSHRVPIIG 387 (387)
Q Consensus 379 l~~GvP~l~ 387 (387)
+++|||||+
T Consensus 370 i~~GvP~v~ 378 (470)
T PLN03015 370 LTKGVPIVA 378 (470)
T ss_pred HHcCCCEEe
Confidence 999999986
No 14
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=4.4e-52 Score=384.69 Aligned_cols=362 Identities=22% Similarity=0.392 Sum_probs=257.8
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcc-hhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCC
Q 040467 3 QRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSN-LKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSD 81 (387)
Q Consensus 3 ~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 81 (387)
|++.||+++|+|++||++||+.||+.|++++|+.|||++++.+ ...+.+......+++|..++ ++++.+.+...
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~-----dglp~g~~~~~ 75 (455)
T PLN02152 1 MAPPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFS-----DGFDDGVISNT 75 (455)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcC-----CCCCCcccccc
Confidence 4567999999999999999999999999416999999999864 22221111101368888886 46665532211
Q ss_pred CCCCCchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHhCCceEEEcchhHHHHHHHHHhhhc
Q 040467 82 SLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSLWLN 161 (387)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~ 161 (387)
. .....+......+.+.++++++++... +.+++|||+|.+..|+..+|+++|||.+.++++++...+.+.+....
T Consensus 76 ~---~~~~~~~~~~~~~~~~l~~~l~~l~~~--~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~ 150 (455)
T PLN02152 76 D---DVQNRLVNFERNGDKALSDFIEANLNG--DSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTG 150 (455)
T ss_pred c---cHHHHHHHHHHhccHHHHHHHHHhhcc--CCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhcc
Confidence 1 111344445567778888888876321 21359999999999999999999999999999999988877654321
Q ss_pred CCCCCCCcccCCCCCCCcccCccccchhhhhcCCCChhHHHHHHHhhhhc--cCcEEEEechhhhcHHHHHHHHhhcCCC
Q 040467 162 LPHRDSDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWM--NADGILFNTVEELDKIGLMYFSRKLGRP 239 (387)
Q Consensus 162 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~le~~~~~~~~~~~~~~ 239 (387)
. .+...+|++|. ++.++++.++........+...+.+...... .++++++||+++||+.+++.++. .+
T Consensus 151 ~----~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~---~~ 220 (455)
T PLN02152 151 N----NSVFEFPNLPS---LEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN---IE 220 (455)
T ss_pred C----CCeeecCCCCC---CchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc---CC
Confidence 1 12234677766 6777887766432222233344444444333 24699999999999999999865 26
Q ss_pred eEEeccccCCCCCCCCC-CC--CCCCChhhhccccCCCCCCeeEEEecCCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCC
Q 040467 240 VWPVGSLLLSTGSRAGA-GK--EYGISTELCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPP 316 (387)
Q Consensus 240 ~~~vGp~~~~~~~~~~~-~~--~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~ 316 (387)
++.|||+.+....+..+ +. ..+..+.++.+|||++++++||||||||+...+.+++++++.+|+..+++|||+++.+
T Consensus 221 v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~ 300 (455)
T PLN02152 221 MVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDK 300 (455)
T ss_pred EEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecC
Confidence 99999997642101000 00 0012345799999999878999999999999999999999999999999999999753
Q ss_pred CCCC--CCcchhcccCCchhHHHHhccCCCcEEeccccCHHHhhCccCcceeeeccChhHHHHHHHcCCcccC
Q 040467 317 LGFD--MNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 317 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l~ 387 (387)
...+ ..........++++|.++.+ .|.++.+|+||.+||+|++|++|||||||||+.||+++|||||+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~f~e~~~---~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~ 370 (455)
T PLN02152 301 LNREAKIEGEEETEIEKIAGFRHELE---EVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVA 370 (455)
T ss_pred cccccccccccccccccchhHHHhcc---CCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEe
Confidence 2000 00000000014678887764 55677799999999999999999999999999999999999985
No 15
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=6e-52 Score=386.53 Aligned_cols=347 Identities=27% Similarity=0.453 Sum_probs=253.1
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHH--HHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCC
Q 040467 3 QRKENIVMFPLMAQGHTIPFLALALH--LENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENS 80 (387)
Q Consensus 3 ~~~~~il~~~~~~~GH~~P~l~la~~--L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (387)
..+.||+++|+|++||++|++.||++ |++ ||++|||++++.+.+++.+.+.....+++..+| ++++++..
T Consensus 6 ~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~-~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~-----~glp~~~~-- 77 (456)
T PLN02210 6 GQETHVLMVTLAFQGHINPMLKLAKHLSLSS-KNLHFTLATTEQARDLLSTVEKPRRPVDLVFFS-----DGLPKDDP-- 77 (456)
T ss_pred CCCCEEEEeCCcccccHHHHHHHHHHHHhhc-CCcEEEEEeccchhhhhccccCCCCceEEEECC-----CCCCCCcc--
Confidence 44679999999999999999999999 558 999999999999887775433211345555554 45655431
Q ss_pred CCCCCCchhHHHHHH-hhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHhCCceEEEcchhHHHHHHHHHhh
Q 040467 81 DSLPFHLFPNFFEST-LSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSLW 159 (387)
Q Consensus 81 ~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~ 159 (387)
.....++..+ +.+.+.+++++++. +|||||+|.+..|+..+|+++|||.+.+++.++..+....+..
T Consensus 78 -----~~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~ 145 (456)
T PLN02210 78 -----RAPETLLKSLNKVGAKNLSKIIEEK-------RYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYY 145 (456)
T ss_pred -----cCHHHHHHHHHHhhhHHHHHHHhcC-------CCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhh
Confidence 1122344444 45667777777765 8999999999999999999999999999999988877666432
Q ss_pred h-cCCCCC-C---CcccCCCCCCCcccCccccchhhhhcCCCChhHHHHHHHhhhhccCcEEEEechhhhcHHHHHHHHh
Q 040467 160 L-NLPHRD-S---DEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKIGLMYFSR 234 (387)
Q Consensus 160 ~-~~p~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~ 234 (387)
. ..+... . +...+|+++. +..++++.++..... ..+.....+.......++++++||+.+||.++++.++.
T Consensus 146 ~~~~~~~~~~~~~~~~~~Pgl~~---~~~~dl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~ 221 (456)
T PLN02210 146 MKTNSFPDLEDLNQTVELPALPL---LEVRDLPSFMLPSGG-AHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMAD 221 (456)
T ss_pred hccCCCCcccccCCeeeCCCCCC---CChhhCChhhhcCCc-hHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhh
Confidence 1 111111 1 1234667665 666677665543211 11222333444455678899999999999999999876
Q ss_pred hcCCCeEEeccccCCC---C-CCC-CCCC--CCCCChhhhccccCCCCCCeeEEEecCCCcCCCHHHHHHHHHHHHhCCC
Q 040467 235 KLGRPVWPVGSLLLST---G-SRA-GAGK--EYGISTELCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGK 307 (387)
Q Consensus 235 ~~~~~~~~vGp~~~~~---~-~~~-~~~~--~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~a~~~~~~ 307 (387)
. +++++|||+++.. . ... ..+. ..+..+.+|.+||+.++++++|||||||+...+.+++++++.+|+..++
T Consensus 222 -~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~ 299 (456)
T PLN02210 222 -L-KPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGV 299 (456)
T ss_pred -c-CCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCC
Confidence 3 6899999997521 0 000 0000 1133466799999999888999999999999999999999999999999
Q ss_pred cEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEeccccCHHHhhCccCcceeeeccChhHHHHHHHcCCcccC
Q 040467 308 NFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 308 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l~ 387 (387)
+|||+++.+.. ...+..+.++.+ +.+.++++|+||.+||+|+++++|||||||||+.||+++|||||+
T Consensus 300 ~flw~~~~~~~----------~~~~~~~~~~~~--~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~ 367 (456)
T PLN02210 300 PFLWVIRPKEK----------AQNVQVLQEMVK--EGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVA 367 (456)
T ss_pred CEEEEEeCCcc----------ccchhhHHhhcc--CCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEe
Confidence 99999975420 112344555542 244466799999999999999999999999999999999999986
No 16
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=7.7e-52 Score=385.60 Aligned_cols=358 Identities=27% Similarity=0.483 Sum_probs=262.3
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcC---C---CC---CCeeEEeccCCCCCCCCC
Q 040467 4 RKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSL---P---QN---SSIHLREIPFDGIAHDLP 74 (387)
Q Consensus 4 ~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~---~---~~---~~i~~~~~~~~~~~~~~~ 74 (387)
.+.||+++|+|++||++||+.||+.|+. +|..|||++++.+..++.+.. . .. ..++|..+| ++++
T Consensus 6 ~~~HVv~~PfpaqGHi~Pml~lA~~La~-~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~p-----dglp 79 (480)
T PLN02555 6 SLVHVMLVSFPGQGHVNPLLRLGKLLAS-KGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFE-----DGWA 79 (480)
T ss_pred CCCEEEEECCcccccHHHHHHHHHHHHh-CCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCC-----CCCC
Confidence 3689999999999999999999999999 999999999998777665311 0 00 124444443 4665
Q ss_pred CCCCCCCCCCCCchhHHHHHH-hhhhHHHHHHHHhhhhccCCCCC-eEEEeCCCchhhHHHHHHhCCceEEEcchhHHHH
Q 040467 75 PCTENSDSLPFHLFPNFFEST-LSFKPHFRKLINGLIDEQNGHKP-VCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGF 152 (387)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~p-D~vV~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~ 152 (387)
.+.+.. .....++..+ ..+.+.++++++++.. ++ +| +|||+|.+..|+..+|+++|||.+.++++++..+
T Consensus 80 ~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~-~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~ 151 (480)
T PLN02555 80 EDDPRR-----QDLDLYLPQLELVGKREIPNLVKRYAE--QG-RPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACF 151 (480)
T ss_pred CCcccc-----cCHHHHHHHHHHhhhHHHHHHHHHHhc--cC-CCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHH
Confidence 543321 1223444444 3567788888876532 12 44 9999999999999999999999999999999988
Q ss_pred HHHHHhhhc-CCCCC---C-CcccCCCCCCCcccCccccchhhhhcCCCChhHHHHHHHhhhhccCcEEEEechhhhcHH
Q 040467 153 ACFYSLWLN-LPHRD---S-DEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKI 227 (387)
Q Consensus 153 ~~~~~~~~~-~p~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~ 227 (387)
+.+.+.... .+... + +...+|++|. ++.++++.++........+.+.+.+.......++++++||+.+||..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~ 228 (480)
T PLN02555 152 SAYYHYYHGLVPFPTETEPEIDVQLPCMPL---LKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKE 228 (480)
T ss_pred HHHHHHhhcCCCcccccCCCceeecCCCCC---cCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHH
Confidence 877665322 12111 1 2245778876 77778877654221222334444455556678899999999999999
Q ss_pred HHHHHHhhcCCCeEEeccccCCCCCC-CCCCCCCCCChhhhccccCCCCCCeeEEEecCCCcCCCHHHHHHHHHHHHhCC
Q 040467 228 GLMYFSRKLGRPVWPVGSLLLSTGSR-AGAGKEYGISTELCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACG 306 (387)
Q Consensus 228 ~~~~~~~~~~~~~~~vGp~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~a~~~~~ 306 (387)
+++.++... + ++.|||+.+..... ...+...+..+++|.+||++++++++|||||||+...+.+++.+++.+++..+
T Consensus 229 ~~~~l~~~~-~-v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~ 306 (480)
T PLN02555 229 IIDYMSKLC-P-IKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSG 306 (480)
T ss_pred HHHHHhhCC-C-EEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcC
Confidence 999987654 3 99999997542110 00001112345789999999988899999999999999999999999999999
Q ss_pred CcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEeccccCHHHhhCccCcceeeeccChhHHHHHHHcCCccc
Q 040467 307 KNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHRVPII 386 (387)
Q Consensus 307 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l 386 (387)
++|||+++.... .++... ..+|+++.++++ .|+++++|+||.+||.|++|++|||||||||+.||+++|||||
T Consensus 307 ~~flW~~~~~~~---~~~~~~-~~lp~~~~~~~~---~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l 379 (480)
T PLN02555 307 VSFLWVMRPPHK---DSGVEP-HVLPEEFLEKAG---DKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVV 379 (480)
T ss_pred CeEEEEEecCcc---cccchh-hcCChhhhhhcC---CceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEE
Confidence 999999874310 000111 247788877764 5677789999999999999999999999999999999999998
Q ss_pred C
Q 040467 387 G 387 (387)
Q Consensus 387 ~ 387 (387)
+
T Consensus 380 ~ 380 (480)
T PLN02555 380 C 380 (480)
T ss_pred e
Confidence 6
No 17
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=8.6e-52 Score=383.53 Aligned_cols=356 Identities=24% Similarity=0.411 Sum_probs=254.4
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCC--cEEEEEeCCcch-hhhhh----cCCCCCCeeEEeccCCCCCCCCCC
Q 040467 3 QRKENIVMFPLMAQGHTIPFLALALHLENTNR--YTITFVNTPSNL-KKLKS----SLPQNSSIHLREIPFDGIAHDLPP 75 (387)
Q Consensus 3 ~~~~~il~~~~~~~GH~~P~l~la~~L~~~rG--h~Vt~~~~~~~~-~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~ 75 (387)
|+|.||+++|+|++||++||+.||+.|++ +| ..|||++++.+. ..+.. ......+++|..+|.. +..+.
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~-~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~---~~~~~ 76 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIE-QDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPEL---EEKPT 76 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHh-CCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCC---CCCCc
Confidence 67889999999999999999999999999 98 999999988765 22221 1111146899999831 11111
Q ss_pred CCCCCCCCCCCchhHHHHHHhhhhHHHHHHHHhhhhc--cCCCCC-eEEEeCCCchhhHHHHHHhCCceEEEcchhHHHH
Q 040467 76 CTENSDSLPFHLFPNFFESTLSFKPHFRKLINGLIDE--QNGHKP-VCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGF 152 (387)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--~~~~~p-D~vV~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~ 152 (387)
.. . .......++..++...+.+++.++++..+ .++ +| +|||+|.+..|+..+|+++|||.+.++++++...
T Consensus 77 ~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~ 150 (468)
T PLN02207 77 LG-G----TQSVEAYVYDVIEKNIPLVRNIVMDILSSLALDG-VKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFL 150 (468)
T ss_pred cc-c----ccCHHHHHHHHHHhcchhHHHHHHHHHHHhccCC-CCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHH
Confidence 00 0 11111344455555544444443333221 112 34 9999999999999999999999999999999888
Q ss_pred HHHHHhhhcC-CC-----CCC-CcccCCCC-CCCcccCccccchhhhhcCCCChhHHHHHHHhhhhccCcEEEEechhhh
Q 040467 153 ACFYSLWLNL-PH-----RDS-DEFLLPDF-PEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEEL 224 (387)
Q Consensus 153 ~~~~~~~~~~-p~-----~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 224 (387)
+.+.+.+... +. ... ....+|++ +. ++..+++.++.... . ...+.+.......++++++||+++|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~vPgl~~~---l~~~dlp~~~~~~~---~-~~~~~~~~~~~~~~~~vlvNtf~~L 223 (468)
T PLN02207 151 AMMQYLADRHSKDTSVFVRNSEEMLSIPGFVNP---VPANVLPSALFVED---G-YDAYVKLAILFTKANGILVNSSFDI 223 (468)
T ss_pred HHHHHhhhccccccccCcCCCCCeEECCCCCCC---CChHHCcchhcCCc---c-HHHHHHHHHhcccCCEEEEEchHHH
Confidence 7766543211 10 001 12346776 44 77777776653211 1 2233344456678899999999999
Q ss_pred cHHHHHHHHh-hcCCCeEEeccccCCCCCCCCCCCCCCCChhhhccccCCCCCCeeEEEecCCCcCCCHHHHHHHHHHHH
Q 040467 225 DKIGLMYFSR-KLGRPVWPVGSLLLSTGSRAGAGKEYGISTELCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALE 303 (387)
Q Consensus 225 e~~~~~~~~~-~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~a~~ 303 (387)
|.++++.++. ...++++.|||+........ .......++++.+||++++++++|||||||....+.+++++++.+|+
T Consensus 224 E~~~~~~~~~~~~~p~v~~VGPl~~~~~~~~--~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~ 301 (468)
T PLN02207 224 EPYSVNHFLDEQNYPSVYAVGPIFDLKAQPH--PEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLE 301 (468)
T ss_pred hHHHHHHHHhccCCCcEEEecCCcccccCCC--CccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHH
Confidence 9999999865 34478999999986431100 00001123679999999988899999999999999999999999999
Q ss_pred hCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEeccccCHHHhhCccCcceeeeccChhHHHHHHHcCC
Q 040467 304 ACGKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHRV 383 (387)
Q Consensus 304 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~lL~~~~~~~~v~HGG~~s~~eal~~Gv 383 (387)
..+++|||+++.+. .... +.+|++|.++++ .|..+++|+||.+||+|+++++|||||||||+.||+++||
T Consensus 302 ~~~~~flW~~r~~~------~~~~-~~lp~~f~er~~---~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GV 371 (468)
T PLN02207 302 LCQYRFLWSLRTEE------VTND-DLLPEGFLDRVS---GRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGV 371 (468)
T ss_pred HCCCcEEEEEeCCC------cccc-ccCCHHHHhhcC---CCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCC
Confidence 99999999998532 0001 348889988875 4556779999999999999999999999999999999999
Q ss_pred cccC
Q 040467 384 PIIG 387 (387)
Q Consensus 384 P~l~ 387 (387)
|||+
T Consensus 372 P~l~ 375 (468)
T PLN02207 372 PIVT 375 (468)
T ss_pred CEEe
Confidence 9986
No 18
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=8.9e-52 Score=387.80 Aligned_cols=354 Identities=27% Similarity=0.457 Sum_probs=262.3
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCC----cEEEEEeCCcchh----hhhhcC----CCCCCeeEEeccCCCCC
Q 040467 3 QRKENIVMFPLMAQGHTIPFLALALHLENTNR----YTITFVNTPSNLK----KLKSSL----PQNSSIHLREIPFDGIA 70 (387)
Q Consensus 3 ~~~~~il~~~~~~~GH~~P~l~la~~L~~~rG----h~Vt~~~~~~~~~----~~~~~~----~~~~~i~~~~~~~~~~~ 70 (387)
|+|.||+++|+|++||++||+.||+.|+. +| +.|||++++.+.+ ++.+.. ....+|+|.++|..
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~-~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~--- 76 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLA-SSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAV--- 76 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHh-CCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCC---
Confidence 57889999999999999999999999999 86 8999999776422 333211 10125889988843
Q ss_pred CCCCCCCCCCCCCCCCchhHHHH-HHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHhCCceEEEcchhH
Q 040467 71 HDLPPCTENSDSLPFHLFPNFFE-STLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGS 149 (387)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~lgiP~v~~~~~~~ 149 (387)
.++.+.+ ....++. ..+.+.+.++++++++. . +++|||+|.+..|+..+|+++|||.+.++++++
T Consensus 77 -~~p~~~e--------~~~~~~~~~~~~~~~~l~~~L~~l~----~-pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA 142 (480)
T PLN00164 77 -EPPTDAA--------GVEEFISRYIQLHAPHVRAAIAGLS----C-PVAALVVDFFCTPLLDVARELAVPAYVYFTSTA 142 (480)
T ss_pred -CCCCccc--------cHHHHHHHHHHhhhHHHHHHHHhcC----C-CceEEEECCcchhHHHHHHHhCCCEEEEECccH
Confidence 1222211 1123333 44677788888887751 1 459999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcC---C--CCC-CCcccCCCCCCCcccCccccchhhhhcCCCChhHHHHHHHhhhhccCcEEEEechhh
Q 040467 150 FGFACFYSLWLNL---P--HRD-SDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEE 223 (387)
Q Consensus 150 ~~~~~~~~~~~~~---p--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (387)
..++.+.+.+... + ... ++...+|+++. ++..+++.++.... +.....+....+...+++++++||+++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPGlp~---l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vlvNTf~e 217 (480)
T PLN00164 143 AMLALMLRLPALDEEVAVEFEEMEGAVDVPGLPP---VPASSLPAPVMDKK--SPNYAWFVYHGRRFMEAAGIIVNTAAE 217 (480)
T ss_pred HHHHHHhhhhhhcccccCcccccCcceecCCCCC---CChHHCCchhcCCC--cHHHHHHHHHHHhhhhcCEEEEechHH
Confidence 9888776653211 1 011 12234677765 67777776554321 122233333445567889999999999
Q ss_pred hcHHHHHHHHhhc------CCCeEEeccccCCCCCCCCCCCCCCCChhhhccccCCCCCCeeEEEecCCCcCCCHHHHHH
Q 040467 224 LDKIGLMYFSRKL------GRPVWPVGSLLLSTGSRAGAGKEYGISTELCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQ 297 (387)
Q Consensus 224 le~~~~~~~~~~~------~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~ 297 (387)
||+.+++.++... .++++.|||+.+..... . ....+++|.+||++++++++|||||||+...+.+++++
T Consensus 218 LE~~~~~~~~~~~~~~~~~~~~v~~vGPl~~~~~~~----~-~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~e 292 (480)
T PLN00164 218 LEPGVLAAIADGRCTPGRPAPTVYPIGPVISLAFTP----P-AEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVRE 292 (480)
T ss_pred hhHHHHHHHHhccccccCCCCceEEeCCCccccccC----C-CccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHH
Confidence 9999999997642 15899999998532110 0 12345789999999988899999999999999999999
Q ss_pred HHHHHHhCCCcEEEEEcCCCCCC---CCcchhcccCCchhHHHHhccCCCcEEeccccCHHHhhCccCcceeeeccChhH
Q 040467 298 LAMALEACGKNFIWVVKPPLGFD---MNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNS 374 (387)
Q Consensus 298 ~~~a~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~lL~~~~~~~~v~HGG~~s 374 (387)
++.+|+..+++|||+++.+...+ ..+.... ..+|+++.++++ .+++++.+|+||.+||+|+++++|||||||||
T Consensus 293 la~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~-~~lp~~~~~~~~--~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS 369 (480)
T PLN00164 293 IAAGLERSGHRFLWVLRGPPAAGSRHPTDADLD-ELLPEGFLERTK--GRGLVWPTWAPQKEILAHAAVGGFVTHCGWNS 369 (480)
T ss_pred HHHHHHHcCCCEEEEEcCCcccccccccccchh-hhCChHHHHHhc--CCCeEEeecCCHHHHhcCcccCeEEeecccch
Confidence 99999999999999998542000 0000011 247889999998 88999999999999999999999999999999
Q ss_pred HHHHHHcCCcccC
Q 040467 375 VLEALSHRVPIIG 387 (387)
Q Consensus 375 ~~eal~~GvP~l~ 387 (387)
+.||+++|||||+
T Consensus 370 ~~Eai~~GVP~l~ 382 (480)
T PLN00164 370 VLESLWHGVPMAP 382 (480)
T ss_pred HHHHHHcCCCEEe
Confidence 9999999999986
No 19
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.5e-50 Score=379.69 Aligned_cols=345 Identities=26% Similarity=0.433 Sum_probs=254.7
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCC--CcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCC
Q 040467 3 QRKENIVMFPLMAQGHTIPFLALALHLENTN--RYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENS 80 (387)
Q Consensus 3 ~~~~~il~~~~~~~GH~~P~l~la~~L~~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (387)
..+.||+++|+|++||++||+.||++|++ | ||+|||++++.+.+++++... ..+++|+.+|. +++......
T Consensus 8 ~~~~hVvlvp~pa~GHi~P~l~LA~~L~~-~~~G~~VT~~~t~~~~~~i~~~~~-~~gi~fv~lp~-----~~p~~~~~~ 80 (459)
T PLN02448 8 TTSCHVVAMPYPGRGHINPMMNLCKLLAS-RKPDILITFVVTEEWLGLIGSDPK-PDNIRFATIPN-----VIPSELVRA 80 (459)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHc-CCCCcEEEEEeCCchHhHhhccCC-CCCEEEEECCC-----CCCCccccc
Confidence 35789999999999999999999999999 9 999999999999888877432 14799998872 333322111
Q ss_pred CCCCCCchhHHHHHH-hhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHhCCceEEEcchhHHHHHHHHHhh
Q 040467 81 DSLPFHLFPNFFEST-LSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSLW 159 (387)
Q Consensus 81 ~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~ 159 (387)
.+...++..+ +.+.+.++++++++. . ++||||+|.++.|+..+|+++|||++.+++.++..++.+.+..
T Consensus 81 -----~~~~~~~~~~~~~~~~~~~~~l~~~~----~-~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~ 150 (459)
T PLN02448 81 -----ADFPGFLEAVMTKMEAPFEQLLDRLE----P-PVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFD 150 (459)
T ss_pred -----cCHHHHHHHHHHHhHHHHHHHHHhcC----C-CcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhh
Confidence 1222333333 466777888887652 1 6799999999999999999999999999999987777655442
Q ss_pred hc-----CCCCC---CCc-c-cCCCCCCCcccCccccchhhhhcCCCChhHHHHHHHhhhhccCcEEEEechhhhcHHHH
Q 040467 160 LN-----LPHRD---SDE-F-LLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKIGL 229 (387)
Q Consensus 160 ~~-----~p~~~---~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~ 229 (387)
.. .+... .+. . .+|+++. ++..+++.++... .....+.+........+++++++||+.+||+.++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~ 225 (459)
T PLN02448 151 LLPQNGHFPVELSESGEERVDYIPGLSS---TRLSDLPPIFHGN--SRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAI 225 (459)
T ss_pred hhhhccCCCCccccccCCccccCCCCCC---CChHHCchhhcCC--chHHHHHHHHHHhhcccCCEEEEccHHHhhHHHH
Confidence 11 11111 111 1 2455544 5666666554322 1222334445555566778999999999999999
Q ss_pred HHHHhhcCCCeEEeccccCCCCCCCCCCC-CCCCChhhhccccCCCCCCeeEEEecCCCcCCCHHHHHHHHHHHHhCCCc
Q 040467 230 MYFSRKLGRPVWPVGSLLLSTGSRAGAGK-EYGISTELCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGKN 308 (387)
Q Consensus 230 ~~~~~~~~~~~~~vGp~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~a~~~~~~~ 308 (387)
+++++.++++++.|||+.+.......... .....+.++.+||+.++++++|||||||+...+.+++++++++|++.+++
T Consensus 226 ~~l~~~~~~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~ 305 (459)
T PLN02448 226 DALKSKFPFPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVR 305 (459)
T ss_pred HHHHhhcCCceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCC
Confidence 99988777789999999864211000000 00112347899999998889999999999988999999999999999999
Q ss_pred EEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEeccccCHHHhhCccCcceeeeccChhHHHHHHHcCCcccC
Q 040467 309 FIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 309 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l~ 387 (387)
|||+++.+. .++.++. +.|+++.+|+||.+||+|+++++|||||||||+.||+++|||||+
T Consensus 306 ~lw~~~~~~---------------~~~~~~~---~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~ 366 (459)
T PLN02448 306 FLWVARGEA---------------SRLKEIC---GDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLT 366 (459)
T ss_pred EEEEEcCch---------------hhHhHhc---cCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEe
Confidence 999886432 1232222 357788899999999999999999999999999999999999986
No 20
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.5e-50 Score=379.52 Aligned_cols=355 Identities=28% Similarity=0.444 Sum_probs=252.9
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCC--cEEEEEeCCcchhhh-------hhcCCC-CCCeeEEeccCCCCCCCCC
Q 040467 5 KENIVMFPLMAQGHTIPFLALALHLENTNR--YTITFVNTPSNLKKL-------KSSLPQ-NSSIHLREIPFDGIAHDLP 74 (387)
Q Consensus 5 ~~~il~~~~~~~GH~~P~l~la~~L~~~rG--h~Vt~~~~~~~~~~~-------~~~~~~-~~~i~~~~~~~~~~~~~~~ 74 (387)
|+||+++|+|++||++||+.||+.|+. +| ..|||++++.+...+ .+.... ..+|+|..+|.. .+
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~-~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~-----~~ 75 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVD-SDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAG-----DQ 75 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHh-CCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCC-----CC
Confidence 689999999999999999999999999 98 899999998775422 111100 146999998743 11
Q ss_pred CCCCCCCCCCCCchhHHHHHHhhhhHHHHHHHHhhhhc---cCCCCC-eEEEeCCCchhhHHHHHHhCCceEEEcchhHH
Q 040467 75 PCTENSDSLPFHLFPNFFESTLSFKPHFRKLINGLIDE---QNGHKP-VCIIADMFFAWSAEIAQEYGIFNALFVGGGSF 150 (387)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~~~p-D~vV~D~~~~~~~~~a~~lgiP~v~~~~~~~~ 150 (387)
.. ... ..+...+..+.+.+++.++++... .++ +| +|||+|.++.|+..+|+++|||++.++++++.
T Consensus 76 ~~----~~~-----~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~ 145 (481)
T PLN02554 76 PT----TED-----PTFQSYIDNQKPKVRDAVAKLVDDSSTPSS-PRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNAT 145 (481)
T ss_pred Cc----ccc-----hHHHHHHHHHHHHHHHHHHHHHhhhccCCC-CCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHH
Confidence 11 000 133344445555666666555322 122 34 89999999999999999999999999999999
Q ss_pred HHHHHHHhhhcC-----CCCC-C---CcccCCCCCCCcccCccccchhhhhcCCCChhHHHHHHHhhhhccCcEEEEech
Q 040467 151 GFACFYSLWLNL-----PHRD-S---DEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTV 221 (387)
Q Consensus 151 ~~~~~~~~~~~~-----p~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (387)
.++.+.+.+... +... . +...+|+++. .++..+++.++.. ..+...+.+......+++++++||+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iPgl~~--pl~~~dlp~~~~~----~~~~~~~~~~~~~~~~~~gvlvNt~ 219 (481)
T PLN02554 146 FLGLQLHVQMLYDEKKYDVSELEDSEVELDVPSLTR--PYPVKCLPSVLLS----KEWLPLFLAQARRFREMKGILVNTV 219 (481)
T ss_pred HHHHHHhhhhhccccccCccccCCCCceeECCCCCC--CCCHHHCCCcccC----HHHHHHHHHHHHhcccCCEEEEech
Confidence 988877654221 1001 1 1234666531 1555566544321 1233444555566778999999999
Q ss_pred hhhcHHHHHHHHhh--cCCCeEEeccccCCCCCCCCCCCCCCCChhhhccccCCCCCCeeEEEecCCCcCCCHHHHHHHH
Q 040467 222 EELDKIGLMYFSRK--LGRPVWPVGSLLLSTGSRAGAGKEYGISTELCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLA 299 (387)
Q Consensus 222 ~~le~~~~~~~~~~--~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~ 299 (387)
.+||..++..+.+. ..++++.|||+........ ......++++.+||++++++++|||||||+...+.+++++++
T Consensus 220 ~eLe~~~~~~l~~~~~~~~~v~~vGpl~~~~~~~~---~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la 296 (481)
T PLN02554 220 AELEPQALKFFSGSSGDLPPVYPVGPVLHLENSGD---DSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIA 296 (481)
T ss_pred HHHhHHHHHHHHhcccCCCCEEEeCCCcccccccc---ccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHH
Confidence 99999999988763 3368999999953221100 001234568999999998789999999999999999999999
Q ss_pred HHHHhCCCcEEEEEcCCCCCCC---Ccch-hcccCCchhHHHHhccCCCcEEeccccCHHHhhCccCcceeeeccChhHH
Q 040467 300 MALEACGKNFIWVVKPPLGFDM---NSEF-RANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSV 375 (387)
Q Consensus 300 ~a~~~~~~~~l~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~lL~~~~~~~~v~HGG~~s~ 375 (387)
.+|++.+++|||+++.+..... .++. .....+|+++.++++ .|+++++|+||.+||.|+++++|||||||||+
T Consensus 297 ~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~---~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~ 373 (481)
T PLN02554 297 IALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTK---DIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSI 373 (481)
T ss_pred HHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHHhc---cCceEEeeCCHHHHhCCcccCcccccCccchH
Confidence 9999999999999976321000 0000 000236888888875 45677799999999999999999999999999
Q ss_pred HHHHHcCCcccC
Q 040467 376 LEALSHRVPIIG 387 (387)
Q Consensus 376 ~eal~~GvP~l~ 387 (387)
.||+++|||||+
T Consensus 374 ~Ea~~~GVP~l~ 385 (481)
T PLN02554 374 LESLWFGVPMAA 385 (481)
T ss_pred HHHHHcCCCEEe
Confidence 999999999986
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.1e-49 Score=374.58 Aligned_cols=362 Identities=29% Similarity=0.458 Sum_probs=251.3
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCC---cEEEEEeCCcch-----hhhhhcCCCCCCeeEEeccCCCCCCCCC
Q 040467 3 QRKENIVMFPLMAQGHTIPFLALALHLENTNR---YTITFVNTPSNL-----KKLKSSLPQNSSIHLREIPFDGIAHDLP 74 (387)
Q Consensus 3 ~~~~~il~~~~~~~GH~~P~l~la~~L~~~rG---h~Vt~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 74 (387)
|++.||+++|+|++||++||+.||+.|+. +| +.||+++++.+. ..+.+.....++|+|.++|.. .. +
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~-~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~---~~-p 75 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLIN-LDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEV---QD-P 75 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHh-CCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCC---CC-C
Confidence 46789999999999999999999999999 98 456777654322 122221111146999998853 11 2
Q ss_pred CCCCCCCCCCCCchhHHHHHHhhhhHHHHHHHHhhhhcc--CCC-CCeEEEeCCCchhhHHHHHHhCCceEEEcchhHHH
Q 040467 75 PCTENSDSLPFHLFPNFFESTLSFKPHFRKLINGLIDEQ--NGH-KPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFG 151 (387)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~-~pD~vV~D~~~~~~~~~a~~lgiP~v~~~~~~~~~ 151 (387)
...+.... .....+......+.+.+++.++++..+. ++. +++|||+|.+..|+..+|+++|||.+.++++++..
T Consensus 76 ~~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~ 152 (475)
T PLN02167 76 PPMELFVK---ASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGF 152 (475)
T ss_pred cccccccc---chHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHH
Confidence 11110000 0112444455566667777776653221 121 24999999999999999999999999999999988
Q ss_pred HHHHHHhhh-c--CCCC--C-C--CcccCCCCCCCcccCccccchhhhhcCCCChhHHHHHHHhhhhccCcEEEEechhh
Q 040467 152 FACFYSLWL-N--LPHR--D-S--DEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEE 223 (387)
Q Consensus 152 ~~~~~~~~~-~--~p~~--~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (387)
++.+.+.+. . .+.. . + +...+|+++.. ++..+++.++.... ....+.+.......++++++||+++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPgl~~~--l~~~dlp~~~~~~~----~~~~~~~~~~~~~~a~~vlvNTf~e 226 (475)
T PLN02167 153 LGMMKYLPERHRKTASEFDLSSGEEELPIPGFVNS--VPTKVLPPGLFMKE----SYEAWVEIAERFPEAKGILVNSFTE 226 (475)
T ss_pred HHHHHHHHHhccccccccccCCCCCeeECCCCCCC--CChhhCchhhhCcc----hHHHHHHHHHhhcccCEeeeccHHH
Confidence 877664431 1 1100 0 1 22346666321 45555655443211 1223334445567789999999999
Q ss_pred hcHHHHHHHHhhc--CCCeEEeccccCCCCCCCCCCCCCCCChhhhccccCCCCCCeeEEEecCCCcCCCHHHHHHHHHH
Q 040467 224 LDKIGLMYFSRKL--GRPVWPVGSLLLSTGSRAGAGKEYGISTELCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMA 301 (387)
Q Consensus 224 le~~~~~~~~~~~--~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~a 301 (387)
||+.+++++++.. -++++.|||+.+...... .......+.++.+||+.++++++|||||||+...+.+++++++.+
T Consensus 227 LE~~~~~~l~~~~~~~p~v~~vGpl~~~~~~~~--~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~ 304 (475)
T PLN02167 227 LEPNAFDYFSRLPENYPPVYPVGPILSLKDRTS--PNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQA 304 (475)
T ss_pred HHHHHHHHHHhhcccCCeeEEeccccccccccC--CCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHH
Confidence 9999999987641 168999999986431000 000011236799999999888999999999998999999999999
Q ss_pred HHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEeccccCHHHhhCccCcceeeeccChhHHHHHHHc
Q 040467 302 LEACGKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSH 381 (387)
Q Consensus 302 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~lL~~~~~~~~v~HGG~~s~~eal~~ 381 (387)
|++.+++|||+++.+...+ .... ..+|+++.++++ .+. ++++|+||.+||+|++|++|||||||||+.||+++
T Consensus 305 l~~~~~~flw~~~~~~~~~---~~~~-~~lp~~~~er~~--~rg-~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~ 377 (475)
T PLN02167 305 LELVGCRFLWSIRTNPAEY---ASPY-EPLPEGFMDRVM--GRG-LVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWF 377 (475)
T ss_pred HHhCCCcEEEEEecCcccc---cchh-hhCChHHHHHhc--cCe-eeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHc
Confidence 9999999999997542000 0001 248889998887 554 56699999999999999999999999999999999
Q ss_pred CCcccC
Q 040467 382 RVPIIG 387 (387)
Q Consensus 382 GvP~l~ 387 (387)
|||||+
T Consensus 378 GvP~l~ 383 (475)
T PLN02167 378 GVPIAT 383 (475)
T ss_pred CCCEEe
Confidence 999986
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=8e-40 Score=309.17 Aligned_cols=334 Identities=16% Similarity=0.190 Sum_probs=213.3
Q ss_pred cEEEEE-cCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCC-
Q 040467 6 ENIVMF-PLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSL- 83 (387)
Q Consensus 6 ~~il~~-~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~- 83 (387)
.||+.+ |.++.||+.-+.+|+++|++ |||+||++++.... ....... .+++.+.++.. .+............
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~-rGH~VTvi~p~~~~-~~~~~~~--~~~~~i~~~~~--~~~~~~~~~~~~~~~ 94 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAE-RGHNVTVIKPTLRV-YYASHLC--GNITEIDASLS--VEYFKKLVKSSAVFR 94 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHH-cCCeEEEEeccccc-ccccCCC--CCEEEEEcCCC--hHHHHHHHhhhhHHH
Confidence 468755 88999999999999999999 99999999775421 1111011 45555554321 11111000000000
Q ss_pred ----CCCch---hHHHHH-Hhhh-----hHHHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHh-CCceEEEcchhH
Q 040467 84 ----PFHLF---PNFFES-TLSF-----KPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEY-GIFNALFVGGGS 149 (387)
Q Consensus 84 ----~~~~~---~~~~~~-~~~~-----~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~l-giP~v~~~~~~~ 149 (387)
..... ...... ...+ .+.+.+++++ .++ ++|+||+|.+..|++.+|+++ ++|.|.++++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~-~~~----kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~ 169 (507)
T PHA03392 95 KRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIAN-KNN----KFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYG 169 (507)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhc-CCC----ceeEEEecccchhHHHHHHHhCCCCEEEEcCCCC
Confidence 00000 001111 1111 2233444431 011 799999999988999999999 999988877544
Q ss_pred HHHH----H-HHHhhhcCCCCC---CCcccCCCCCCCcccCccccchhhhhcCCCChhHHHHHHH--------hhhhccC
Q 040467 150 FGFA----C-FYSLWLNLPHRD---SDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKV--------LPQWMNA 213 (387)
Q Consensus 150 ~~~~----~-~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 213 (387)
.... . .+.+++|.|... ++.+.+.++-.|........ ... ........+...+. .+..+..
T Consensus 170 ~~~~~~~~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~--~~~-~~~~~~~~~l~~~~f~~~~~~~~~l~~~~ 246 (507)
T PHA03392 170 LAENFETMGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLY--NEF-SLLADEQNKLLKQQFGPDTPTIRELRNRV 246 (507)
T ss_pred chhHHHhhccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHH--HHH-HHhhHHHHHHHHHHcCCCCCCHHHHHhCC
Confidence 3221 1 233445655432 44444444433321110000 000 00001111222222 2233456
Q ss_pred cEEEEechhhhcHHHHHHHHhhcCCCeEEeccccCCCCCCCCCCCCCCCChhhhccccCCCCCCeeEEEecCCCcC---C
Q 040467 214 DGILFNTVEELDKIGLMYFSRKLGRPVWPVGSLLLSTGSRAGAGKEYGISTELCKNWLDTKPCNSVIYVSFGSQNT---I 290 (387)
Q Consensus 214 ~~~~~~~~~~le~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~---~ 290 (387)
+.+++|+...++++ +++++++++||++..+... ..++++++.+|+++++ +++|||||||+.. .
T Consensus 247 ~l~lvns~~~~d~~------rp~~p~v~~vGgi~~~~~~-------~~~l~~~l~~fl~~~~-~g~V~vS~GS~~~~~~~ 312 (507)
T PHA03392 247 QLLFVNVHPVFDNN------RPVPPSVQYLGGLHLHKKP-------PQPLDDYLEEFLNNST-NGVVYVSFGSSIDTNDM 312 (507)
T ss_pred cEEEEecCccccCC------CCCCCCeeeecccccCCCC-------CCCCCHHHHHHHhcCC-CcEEEEECCCCCcCCCC
Confidence 78999999999977 6889999999999764311 2457889999999874 6799999999863 5
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEeccccCHHHhhCccCcceeeecc
Q 040467 291 AASQMMQLAMALEACGKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHC 370 (387)
Q Consensus 291 ~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~lL~~~~~~~~v~HG 370 (387)
+.+.++.+++|+++.+++|||+++... .+.+ . |+|+++.+|+||.+||+|+++++|||||
T Consensus 313 ~~~~~~~~l~a~~~l~~~viw~~~~~~-------------~~~~-----~--p~Nv~i~~w~Pq~~lL~hp~v~~fItHG 372 (507)
T PHA03392 313 DNEFLQMLLRTFKKLPYNVLWKYDGEV-------------EAIN-----L--PANVLTQKWFPQRAVLKHKNVKAFVTQG 372 (507)
T ss_pred CHHHHHHHHHHHHhCCCeEEEEECCCc-------------Cccc-----C--CCceEEecCCCHHHHhcCCCCCEEEecC
Confidence 688999999999999999999998652 1101 1 7899999999999999999999999999
Q ss_pred ChhHHHHHHHcCCcccC
Q 040467 371 GWNSVLEALSHRVPIIG 387 (387)
Q Consensus 371 G~~s~~eal~~GvP~l~ 387 (387)
|+||++||+++|||||+
T Consensus 373 G~~s~~Eal~~GvP~v~ 389 (507)
T PHA03392 373 GVQSTDEAIDALVPMVG 389 (507)
T ss_pred CcccHHHHHHcCCCEEE
Confidence 99999999999999985
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=3.6e-41 Score=323.81 Aligned_cols=336 Identities=25% Similarity=0.295 Sum_probs=174.4
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCC---
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSL--- 83 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--- 83 (387)
||+++|. +.||+.++..|+++|++ |||+||++++... ..+..... ..+++..++.....+............
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~-rGH~VTvl~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAE-RGHNVTVLTPSPS-SSLNPSKP--SNIRFETYPDPYPEEEFEEIFPEFISKFFS 76 (500)
T ss_dssp -----------SHHHHHHHHHHHHH-H-TTSEEEHHHHH-HT--------S-CCEEEE-----TT------TTHHHHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHh-cCCceEEEEeecc-cccccccc--cceeeEEEcCCcchHHHhhhhHHHHHHHhh
Confidence 5888885 78999999999999999 9999999986432 22332222 566777766431112211111100000
Q ss_pred --CC-CchhHHHHHHhhh----hHHH------HHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHhCCceEEEcchhHH
Q 040467 84 --PF-HLFPNFFESTLSF----KPHF------RKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSF 150 (387)
Q Consensus 84 --~~-~~~~~~~~~~~~~----~~~~------~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~lgiP~v~~~~~~~~ 150 (387)
.. ......+...... .... ..+++.+.++ ++|++|+|.+..|+..+|+.+++|.+.+.+..+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~----~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~ 152 (500)
T PF00201_consen 77 ESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSE----KFDLVISDAFDPCGLALAHYLGIPVIIISSSTPM 152 (500)
T ss_dssp HHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHH----HHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSC
T ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh----ccccceEeeccchhHHHHHHhcCCeEEEeccccc
Confidence 00 0000111111000 0000 0111122222 7999999999999999999999998765432211
Q ss_pred HHH-----HHHHhhhcCCCCC---CCcccCCCCCCCcccCc--cccchhhhhc--CCCChhHHHHHHHhhhhccCcEEEE
Q 040467 151 GFA-----CFYSLWLNLPHRD---SDEFLLPDFPEASRIHV--TQMTKFLRLA--DGSDSLSVFFQKVLPQWMNADGILF 218 (387)
Q Consensus 151 ~~~-----~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (387)
... ..+.++++.|... ++.+.+.++..|..... ......+... .........-....+.....+.+++
T Consensus 153 ~~~~~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 232 (500)
T PF00201_consen 153 YDLSSFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFPFSFRELLSNASLVLI 232 (500)
T ss_dssp SCCTCCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-GGGCHHHHHHHHHCCS
T ss_pred chhhhhccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccccccHHHHHHHHHHhh
Confidence 100 1122334444322 33344444333322110 0000000000 0000000000011122233455677
Q ss_pred echhhhcHHHHHHHHhhcCCCeEEeccccCCCCCCCCCCCCCCCChhhhccccCCCCCCeeEEEecCCCcCCCH-HHHHH
Q 040467 219 NTVEELDKIGLMYFSRKLGRPVWPVGSLLLSTGSRAGAGKEYGISTELCKNWLDTKPCNSVIYVSFGSQNTIAA-SQMMQ 297 (387)
Q Consensus 219 ~~~~~le~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~-~~~~~ 297 (387)
|+...++.| ++++|+++++|++.... ..++++++++|+++..++++|||||||+....+ +..++
T Consensus 233 ns~~~ld~p------rp~~p~v~~vGgl~~~~---------~~~l~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~~ 297 (500)
T PF00201_consen 233 NSHPSLDFP------RPLLPNVVEVGGLHIKP---------AKPLPEELWNFLDSSGKKGVVYVSFGSIVSSMPEEKLKE 297 (500)
T ss_dssp STEEE----------HHHHCTSTTGCGC-S-------------TCHHHHHHHTSTTTTTEEEEEE-TSSSTT-HHHHHHH
T ss_pred hccccCcCC------cchhhcccccCcccccc---------ccccccccchhhhccCCCCEEEEecCcccchhHHHHHHH
Confidence 777777765 34558999999987654 245789999999985568999999999975444 45888
Q ss_pred HHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEeccccCHHHhhCccCcceeeeccChhHHHH
Q 040467 298 LAMALEACGKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLE 377 (387)
Q Consensus 298 ~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~lL~~~~~~~~v~HGG~~s~~e 377 (387)
+++||++.+++|||++++.. +..+ ++|+++.+|+||.+||.|+++++||||||+||+.|
T Consensus 298 ~~~~~~~~~~~~iW~~~~~~--------------~~~l-------~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~E 356 (500)
T PF00201_consen 298 IAEAFENLPQRFIWKYEGEP--------------PENL-------PKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQE 356 (500)
T ss_dssp HHHHHHCSTTEEEEEETCSH--------------GCHH-------HTTEEEESS--HHHHHTSTTEEEEEES--HHHHHH
T ss_pred HHHHHhhCCCcccccccccc--------------cccc-------cceEEEeccccchhhhhcccceeeeeccccchhhh
Confidence 99999999999999997642 1222 67899999999999999999999999999999999
Q ss_pred HHHcCCcccC
Q 040467 378 ALSHRVPIIG 387 (387)
Q Consensus 378 al~~GvP~l~ 387 (387)
|+++||||||
T Consensus 357 a~~~gvP~l~ 366 (500)
T PF00201_consen 357 ALYHGVPMLG 366 (500)
T ss_dssp HHHCT--EEE
T ss_pred hhhccCCccC
Confidence 9999999986
No 24
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=4.4e-36 Score=281.03 Aligned_cols=316 Identities=16% Similarity=0.092 Sum_probs=189.4
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCC-CCCC
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENS-DSLP 84 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~ 84 (387)
|||+|++.|+.||++|+++||++|++ |||+|+|++++.++..+++ .|++|..++............... ....
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~-rGh~V~~~t~~~~~~~v~~-----~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRA-AGHEVRVATPPEFADLVEA-----AGLEFVPVGGDPDELLASPERNAGLLLLG 74 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHH-CCCeEEEeeCHhHHHHHHH-----cCCceeeCCCCHHHHHhhhhhcccccccc
Confidence 47999999999999999999999999 9999999999999999998 777888776321000000000000 0000
Q ss_pred CCchhHHHHHH-hhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHhCCceEEEcchhHHHHHHHHHhhhcCC
Q 040467 85 FHLFPNFFEST-LSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSLWLNLP 163 (387)
Q Consensus 85 ~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~p 163 (387)
..........+ +.....++++++...+ ++||+||+|.+.+++..+|+++|||++.+++.+........++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~----- 145 (401)
T cd03784 75 PGLLLGALRLLRREAEAMLDDLVAAARD----WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFPPP----- 145 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcc----cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCCCc-----
Confidence 00111111111 2222223333322211 1899999999999999999999999999886543211100000
Q ss_pred CCCCCcccCCCCCCCcccCccccchhhhhcCCCChhHHHHHHHhhhhc---------cCcEEEEechhhhcHHHHHHHHh
Q 040467 164 HRDSDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWM---------NADGILFNTVEELDKIGLMYFSR 234 (387)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~le~~~~~~~~~ 234 (387)
+ . ............................... .....+......+. .+..
T Consensus 146 --------~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 205 (401)
T cd03784 146 --------L----G---RANLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVL-----PPPP 205 (401)
T ss_pred --------c----c---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccC-----CCCC
Confidence 0 0 0000000000000000000111111111010 01111111111111 1235
Q ss_pred hcCCCeEEec-cccCCCCCCCCCCCCCCCChhhhccccCCCCCCeeEEEecCCCcCCCH-HHHHHHHHHHHhCCCcEEEE
Q 040467 235 KLGRPVWPVG-SLLLSTGSRAGAGKEYGISTELCKNWLDTKPCNSVIYVSFGSQNTIAA-SQMMQLAMALEACGKNFIWV 312 (387)
Q Consensus 235 ~~~~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~-~~~~~~~~a~~~~~~~~l~~ 312 (387)
.++++.+++| ++..... ....+.+++.|+++. +++|||||||+..... +.++.++++++..+.++||+
T Consensus 206 ~~~~~~~~~g~~~~~~~~--------~~~~~~~~~~~~~~~--~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~ 275 (401)
T cd03784 206 DWPRFDLVTGYGFRDVPY--------NGPPPPELWLFLAAG--RPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILS 275 (401)
T ss_pred CccccCcEeCCCCCCCCC--------CCCCCHHHHHHHhCC--CCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEE
Confidence 6677778886 3332221 123567788888765 6799999999987554 56778999999999999999
Q ss_pred EcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEeccccCHHHhhCccCcceeeeccChhHHHHHHHcCCcccC
Q 040467 313 VKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l~ 387 (387)
++... ... .. .++|+.+.+|+||.++|+|++ +||||||+||++||+++|||+|+
T Consensus 276 ~g~~~-------------~~~----~~--~~~~v~~~~~~p~~~ll~~~d--~~I~hgG~~t~~eal~~GvP~v~ 329 (401)
T cd03784 276 LGWGG-------------LGA----ED--LPDNVRVVDFVPHDWLLPRCA--AVVHHGGAGTTAAALRAGVPQLV 329 (401)
T ss_pred ccCcc-------------ccc----cC--CCCceEEeCCCCHHHHhhhhh--eeeecCCchhHHHHHHcCCCEEe
Confidence 98653 100 01 168999999999999999955 69999999999999999999984
No 25
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=1.4e-35 Score=276.31 Aligned_cols=304 Identities=18% Similarity=0.195 Sum_probs=188.4
Q ss_pred EcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCCCCchhH
Q 040467 11 FPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFHLFPN 90 (387)
Q Consensus 11 ~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (387)
+.+|++||++|+++||++|++ |||+|+|++++.+++.+++ .|++|..++......+..+. . .. .....
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~-~Gh~V~~~~~~~~~~~v~~-----~G~~~~~~~~~~~~~~~~~~--~-~~---~~~~~ 68 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVA-RGHRVTYATTEEFAERVEA-----AGAEFVLYGSALPPPDNPPE--N-TE---EEPID 68 (392)
T ss_pred CCCCccccccccHHHHHHHHh-CCCeEEEEeCHHHHHHHHH-----cCCEEEecCCcCcccccccc--c-cC---cchHH
Confidence 367999999999999999999 9999999999999999999 77788888743111111111 0 00 11111
Q ss_pred HHHHH----hhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHhCCceEEEcchhHHHHHHHHHhhhcCCCCC
Q 040467 91 FFEST----LSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSLWLNLPHRD 166 (387)
Q Consensus 91 ~~~~~----~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~p~~~ 166 (387)
+...+ ..+.+.+.+++++. +||+||+|.+++++..+|+++|||+|.+++....... +. +.. .|..
T Consensus 69 ~~~~~~~~~~~~~~~l~~~~~~~-------~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~-~~-~~~-~~~~- 137 (392)
T TIGR01426 69 IIEKLLDEAEDVLPQLEEAYKGD-------RPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANEE-FE-EMV-SPAG- 137 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC-------CCCEEEECCccHHHHHHHHHhCCCEEEEehhhccccc-cc-ccc-cccc-
Confidence 11111 22223333333333 8999999999999999999999999988654321100 00 000 0000
Q ss_pred CCcccCCCCCCCcccCccccchhhhhcCCCChhHHHHHHHh------hh--hccCcEEEEechhhhcHHHHHHHHhhcCC
Q 040467 167 SDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVL------PQ--WMNADGILFNTVEELDKIGLMYFSRKLGR 238 (387)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~le~~~~~~~~~~~~~ 238 (387)
........... .....+. ..+.+...+.. .. .......+..+...+++ ....|++
T Consensus 138 ~~~~~~~~~~~---~~~~~~~---------~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~-----~~~~~~~ 200 (392)
T TIGR01426 138 EGSAEEGAIAE---RGLAEYV---------ARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQP-----AGETFDD 200 (392)
T ss_pred hhhhhhhcccc---chhHHHH---------HHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCC-----CccccCC
Confidence 00000000000 0000000 00111111100 00 01111233333333333 3567889
Q ss_pred CeEEeccccCCCCCCCCCCCCCCCChhhhccccCCCCCCeeEEEecCCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCC
Q 040467 239 PVWPVGSLLLSTGSRAGAGKEYGISTELCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPPLG 318 (387)
Q Consensus 239 ~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~ 318 (387)
+++++||+.... .+...|....+++++|||||||+.....+.++.+++++.+.+.+++|..+...
T Consensus 201 ~~~~~Gp~~~~~--------------~~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~- 265 (392)
T TIGR01426 201 SFTFVGPCIGDR--------------KEDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGV- 265 (392)
T ss_pred CeEEECCCCCCc--------------cccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCC-
Confidence 999999987543 11224766656688999999998777777888999999999999999887552
Q ss_pred CCCCcchhcccCCchhHHHHhccCCCcEEeccccCHHHhhCccCcceeeeccChhHHHHHHHcCCcccC
Q 040467 319 FDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l~ 387 (387)
....+. ..++|+.+.+|+||.++|++++ ++|||||+||+.||+++|||+|+
T Consensus 266 ------------~~~~~~----~~~~~v~~~~~~p~~~ll~~~~--~~I~hgG~~t~~Eal~~G~P~v~ 316 (392)
T TIGR01426 266 ------------DPADLG----ELPPNVEVRQWVPQLEILKKAD--AFITHGGMNSTMEALFNGVPMVA 316 (392)
T ss_pred ------------ChhHhc----cCCCCeEEeCCCCHHHHHhhCC--EEEECCCchHHHHHHHhCCCEEe
Confidence 001111 1167899999999999999966 59999999999999999999985
No 26
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=8.6e-35 Score=279.72 Aligned_cols=353 Identities=28% Similarity=0.396 Sum_probs=200.2
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEe---ccCCCCCCCCCCCCCCCC
Q 040467 5 KENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLRE---IPFDGIAHDLPPCTENSD 81 (387)
Q Consensus 5 ~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~~ 81 (387)
+.++++++.|++||++|++.+|++|++ +||+||++++.......... .....+.... .+.....+.++.......
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~-~gh~vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAE-RGHNVTVVTPSFNALKLSKS-SKSKSIKKINPPPFEFLTIPDGLPEGWEDDD 82 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHH-cCCceEEEEeechhcccCCc-ccceeeeeeecChHHhhhhhhhhccchHHHH
Confidence 568999999999999999999999999 99999999988766655442 1001111111 111000011121111100
Q ss_pred CCCCCchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHhC-CceEEEcchhHHHHHHHHH-hh
Q 040467 82 SLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYG-IFNALFVGGGSFGFACFYS-LW 159 (387)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~lg-iP~v~~~~~~~~~~~~~~~-~~ 159 (387)
.............+...+++........... ++|++|+|.+..+...++.... ++...+.+..........+ +.
T Consensus 83 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~ 158 (496)
T KOG1192|consen 83 ---LDISESLLELNKTCEDLLRDPLEKLLLLKSE-KFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPL 158 (496)
T ss_pred ---HHHHHHHHHHHHHHHHHHhchHHHHHHhhcC-CccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCcc
Confidence 0000111122233333444433332222112 4999999998777777777765 9988888777665544332 22
Q ss_pred hcCCCCCC----CcccCCCCCCCcccCccccchhhhhcCCCChhHHHHHHHhhhh----ccCcEEEEec-hhhhcHHHHH
Q 040467 160 LNLPHRDS----DEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQW----MNADGILFNT-VEELDKIGLM 230 (387)
Q Consensus 160 ~~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~le~~~~~ 230 (387)
.+.|...+ +.+.++++..+. ....+........................ .....++.++ +..++.....
T Consensus 159 ~~~p~~~~~~~~~~~~~~~~~~n~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~ 236 (496)
T KOG1192|consen 159 SYVPSPFSLSSGDDMSFPERVPNL--IKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLL 236 (496)
T ss_pred cccCcccCccccccCcHHHHHHHH--HHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCccc
Confidence 23333221 222222222210 11111111111100000001111111110 1111222233 3333332222
Q ss_pred HH-HhhcCCCeEEeccccCCCCCCCCCCCCCCCChhhhccccCCCCCC--eeEEEecCCCc---CCCHHHHHHHHHHHHh
Q 040467 231 YF-SRKLGRPVWPVGSLLLSTGSRAGAGKEYGISTELCKNWLDTKPCN--SVIYVSFGSQN---TIAASQMMQLAMALEA 304 (387)
Q Consensus 231 ~~-~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~v~vs~GS~~---~~~~~~~~~~~~a~~~ 304 (387)
.. .....++++.|||+...... .....+.+|++..+.. ++|||||||+. ..+.++..+++.++++
T Consensus 237 ~~~~~~~~~~v~~IG~l~~~~~~---------~~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~ 307 (496)
T KOG1192|consen 237 DFEPRPLLPKVIPIGPLHVKDSK---------QKSPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALES 307 (496)
T ss_pred CCCCCCCCCCceEECcEEecCcc---------ccccccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHHh
Confidence 22 23346899999999987411 1111455666655443 79999999998 7999999999999999
Q ss_pred C-CCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEeccccCHHHh-hCccCcceeeeccChhHHHHHHHcC
Q 040467 305 C-GKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEI-LSHKSISAFLSHCGWNSVLEALSHR 382 (387)
Q Consensus 305 ~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~l-L~~~~~~~~v~HGG~~s~~eal~~G 382 (387)
. +..|||++..+.. ..+++++.++ . +.||...+|+||.++ |+|+++++||||||||||+|++++|
T Consensus 308 ~~~~~FiW~~~~~~~----------~~~~~~~~~~-~--~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~G 374 (496)
T KOG1192|consen 308 LQGVTFLWKYRPDDS----------IYFPEGLPNR-G--RGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSG 374 (496)
T ss_pred CCCceEEEEecCCcc----------hhhhhcCCCC-C--cCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcC
Confidence 9 8889999987530 0012222211 1 568999999999999 5999999999999999999999999
Q ss_pred CcccC
Q 040467 383 VPIIG 387 (387)
Q Consensus 383 vP~l~ 387 (387)
|||||
T Consensus 375 vP~v~ 379 (496)
T KOG1192|consen 375 VPMVC 379 (496)
T ss_pred Cceec
Confidence 99985
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=99.97 E-value=1.9e-31 Score=245.80 Aligned_cols=314 Identities=17% Similarity=0.150 Sum_probs=179.7
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCC
Q 040467 5 KENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLP 84 (387)
Q Consensus 5 ~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (387)
++||+++..|+.||++|+++||++|.+ +||+|+|++++.+++.+++ .++.|..++.. +...........
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~-~gheV~~~~~~~~~~~ve~-----ag~~f~~~~~~---~~~~~~~~~~~~-- 69 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRR-RGHEVVFASTGKFKEFVEA-----AGLAFVAYPIR---DSELATEDGKFA-- 69 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHh-cCCeEEEEeCHHHHHHHHH-----hCcceeecccc---CChhhhhhhhhh--
Confidence 357999999999999999999999999 9999999999999999999 66678877742 111111101100
Q ss_pred CCchhHHHHHHhhhhH---HHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHhCCceEEEcchhHHHHHHHHHhhhc
Q 040467 85 FHLFPNFFESTLSFKP---HFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSLWLN 161 (387)
Q Consensus 85 ~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~ 161 (387)
....+......... .+.+++.+. .+|+|+.|.....+ .+++..++|++...............+...
T Consensus 70 --~~~~~~~~~~~~~~~~~~~~~~~~e~-------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (406)
T COG1819 70 --GVKSFRRLLQQFKKLIRELLELLREL-------EPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLPLPP 139 (406)
T ss_pred --ccchhHHHhhhhhhhhHHHHHHHHhc-------chhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccCccc
Confidence 01122212233333 333344454 79999999877666 788888999887543332211111100000
Q ss_pred CCCCCCCcccCCCCCCCcccCccccchhhhhcCCCChh--HHHHHHHhhhhccC---cEEEEechhhhcHHHHHHH--H-
Q 040467 162 LPHRDSDEFLLPDFPEASRIHVTQMTKFLRLADGSDSL--SVFFQKVLPQWMNA---DGILFNTVEELDKIGLMYF--S- 233 (387)
Q Consensus 162 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~le~~~~~~~--~- 233 (387)
.. ..+.+..+.. .+............. .....+........ ..-+...-..++..+.+.. .
T Consensus 140 ~~--~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (406)
T COG1819 140 VG--IAGKLPIPLY---------PLPPRLVRPLIFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPG 208 (406)
T ss_pred cc--cccccccccc---------ccChhhccccccchhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccCCC
Confidence 00 0111111111 010000000000000 00000000000000 0000000111111100000 0
Q ss_pred hhcCCCeEEeccccCCCCCCCCCCCCCCCChhhhccccCCCCCCeeEEEecCCCcCCCHHHHHHHHHHHHhCCCcEEEEE
Q 040467 234 RKLGRPVWPVGSLLLSTGSRAGAGKEYGISTELCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVV 313 (387)
Q Consensus 234 ~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~a~~~~~~~~l~~~ 313 (387)
..+|-...++||+... ...+...|... ++++||+||||+... .++++.+++++.+++.++|+.+
T Consensus 209 ~~~p~~~~~~~~~~~~-------------~~~~~~~~~~~--d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~ 272 (406)
T COG1819 209 DRLPFIGPYIGPLLGE-------------AANELPYWIPA--DRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSL 272 (406)
T ss_pred CCCCCCcCcccccccc-------------ccccCcchhcC--CCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEec
Confidence 1233344555554432 34455555333 367999999999877 8899999999999999999999
Q ss_pred cCCCCCCCCcchhcccCCchhHHHHhccCCCcEEeccccCHHHhhCccCcceeeeccChhHHHHHHHcCCcccC
Q 040467 314 KPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l~ 387 (387)
+... ... . +.|.|+++.+|+||.++|++++ +||||||+|||+|||++|||+|.
T Consensus 273 ~~~~-----------~~~-~-------~~p~n~~v~~~~p~~~~l~~ad--~vI~hGG~gtt~eaL~~gvP~vv 325 (406)
T COG1819 273 GGAR-----------DTL-V-------NVPDNVIVADYVPQLELLPRAD--AVIHHGGAGTTSEALYAGVPLVV 325 (406)
T ss_pred cccc-----------ccc-c-------cCCCceEEecCCCHHHHhhhcC--EEEecCCcchHHHHHHcCCCEEE
Confidence 7621 001 0 1178999999999999999966 59999999999999999999984
No 28
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.77 E-value=7.7e-17 Score=146.26 Aligned_cols=263 Identities=21% Similarity=0.228 Sum_probs=149.3
Q ss_pred cEEEEEcCC-CcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCC
Q 040467 6 ENIVMFPLM-AQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLP 84 (387)
Q Consensus 6 ~~il~~~~~-~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (387)
|||++...+ +.||+.-.+.||++| + ||+|+|++.....+.+.+ . +....++. +....... .
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L-r--g~~v~~~~~~~~~~~~~~-----~-~~~~~~~~------~~~~~~~~---~ 62 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL-R--GHEVTFITSGPAPEFLKP-----R-FPVREIPG------LGPIQENG---R 62 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH-c--cCceEEEEcCCcHHHhcc-----c-cCEEEccC------ceEeccCC---c
Confidence 468888887 889999999999999 3 799999997766555544 2 34554431 11111110 0
Q ss_pred CCchhHHHHHH------hhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHhCCceEEEcchhHHHHHHHHHh
Q 040467 85 FHLFPNFFEST------LSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSL 158 (387)
Q Consensus 85 ~~~~~~~~~~~------~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~ 158 (387)
........... ......+.+.+++. +||+||+|. .+.+..+|+..|+|++.+........
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~------ 128 (318)
T PF13528_consen 63 LDRWKTVRNNIRWLARLARRIRREIRWLREF-------RPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLH------ 128 (318)
T ss_pred cchHHHHHHHHHhhHHHHHHHHHHHHHHHhc-------CCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHccc------
Confidence 00111222211 22222333344444 899999995 44567889999999998854332100
Q ss_pred hhcCCCCCCCcccCCCCCCCcccCccccchhhhhcCCCChhHHHHHHHhh--hhccCcEEEEechhhhcHHHHHHHHhhc
Q 040467 159 WLNLPHRDSDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLP--QWMNADGILFNTVEELDKIGLMYFSRKL 236 (387)
Q Consensus 159 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~le~~~~~~~~~~~ 236 (387)
+... .... ........+... ....+...+.-++. .. ...
T Consensus 129 --------------~~~~----~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~--------~~~ 169 (318)
T PF13528_consen 129 --------------PNFW----LPWD------------QDFGRLIERYIDRYHFPPADRRLALSFY-PP--------LPP 169 (318)
T ss_pred --------------ccCC----cchh------------hhHHHHHHHhhhhccCCcccceecCCcc-cc--------ccc
Confidence 0000 0000 001111111111 12333333333332 11 011
Q ss_pred CCCeEEeccccCCCCCCCCCCCCCCCChhhhccccCCCCCCeeEEEecCCCcCCCHHHHHHHHHHHHhCC-CcEEEEEcC
Q 040467 237 GRPVWPVGSLLLSTGSRAGAGKEYGISTELCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACG-KNFIWVVKP 315 (387)
Q Consensus 237 ~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~a~~~~~-~~~l~~~~~ 315 (387)
..+..++||+....... ... .+++.|+|+||..... .+++++++.+ +++++. +.
T Consensus 170 ~~~~~~~~p~~~~~~~~----------------~~~--~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~ 224 (318)
T PF13528_consen 170 FFRVPFVGPIIRPEIRE----------------LPP--EDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GP 224 (318)
T ss_pred cccccccCchhcccccc----------------cCC--CCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cC
Confidence 13466788877553110 001 1245899999977533 6677777766 566655 43
Q ss_pred CCCCCCCcchhcccCCchhHHHHhccCCCcEEecccc--CHHHhhCccCcceeeeccChhHHHHHHHcCCcccC
Q 040467 316 PLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWA--PQVEILSHKSISAFLSHCGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--pq~~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l~ 387 (387)
.. ..+. ..|+.+.+|. .-.++|..++ ++|+|||+||+.||++.|+|+|+
T Consensus 225 ~~------------~~~~---------~~ni~~~~~~~~~~~~~m~~ad--~vIs~~G~~t~~Ea~~~g~P~l~ 275 (318)
T PF13528_consen 225 NA------------ADPR---------PGNIHVRPFSTPDFAELMAAAD--LVISKGGYTTISEALALGKPALV 275 (318)
T ss_pred Cc------------cccc---------CCCEEEeecChHHHHHHHHhCC--EEEECCCHHHHHHHHHcCCCEEE
Confidence 31 0111 6788888876 4667898865 59999999999999999999874
No 29
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.73 E-value=1.4e-15 Score=138.74 Aligned_cols=267 Identities=18% Similarity=0.157 Sum_probs=153.7
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCCCC
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFH 86 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (387)
+|+|...++-||+.|.+++|++|.+ +||+|.|++...-. +.......++.+..++.. ++... .
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~-~g~~v~~vg~~~~~---e~~l~~~~g~~~~~~~~~----~l~~~------~--- 65 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKE-DNWDISYIGSHQGI---EKTIIEKENIPYYSISSG----KLRRY------F--- 65 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHh-CCCEEEEEECCCcc---ccccCcccCCcEEEEecc----CcCCC------c---
Confidence 6999999999999999999999999 99999999865432 121111156777777521 22110 0
Q ss_pred chhHHHHHHhhh--hHHHHHHHHhhhhccCCCCCeEEEeCCCch--hhHHHHHHhCCceEEEcchhHHHHHHHHHhhhcC
Q 040467 87 LFPNFFESTLSF--KPHFRKLINGLIDEQNGHKPVCIIADMFFA--WSAEIAQEYGIFNALFVGGGSFGFACFYSLWLNL 162 (387)
Q Consensus 87 ~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~--~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 162 (387)
.+..+....... .-....++++. +||+||..--.. .+..+|..+++|++......
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~i~~~~-------kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~-------------- 124 (352)
T PRK12446 66 DLKNIKDPFLVMKGVMDAYVRIRKL-------KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDM-------------- 124 (352)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc-------CCCEEEecCchhhHHHHHHHHHcCCCEEEECCCC--------------
Confidence 111221111111 11233457777 999999865333 35677888999998863211
Q ss_pred CCCCCCcccCCCCCCCcccCccccchhhhhcCCCChhHHHHHHHhhhhccCcEEEEechhhhcHHHHHHHHhhcC-CCeE
Q 040467 163 PHRDSDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKIGLMYFSRKLG-RPVW 241 (387)
Q Consensus 163 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~-~~~~ 241 (387)
.+++. ++.. .+.++.+. .++.+ . ...++ .+++
T Consensus 125 ---------~~g~~-----------------------nr~~------~~~a~~v~-~~f~~---~-----~~~~~~~k~~ 157 (352)
T PRK12446 125 ---------TPGLA-----------------------NKIA------LRFASKIF-VTFEE---A-----AKHLPKEKVI 157 (352)
T ss_pred ---------CccHH-----------------------HHHH------HHhhCEEE-EEccc---h-----hhhCCCCCeE
Confidence 11110 0000 11122222 12211 1 12233 4788
Q ss_pred EeccccCCCCCCCCCCCCCCCChhhhccccCCCCCCeeEEEecCCCcCCCH-HHHHHHHHHHHhCCCcEEEEEcCCCCCC
Q 040467 242 PVGSLLLSTGSRAGAGKEYGISTELCKNWLDTKPCNSVIYVSFGSQNTIAA-SQMMQLAMALEACGKNFIWVVKPPLGFD 320 (387)
Q Consensus 242 ~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~-~~~~~~~~a~~~~~~~~l~~~~~~~~~~ 320 (387)
.+|+.+...... .......+-+.-.+++++|+|..||.....- +.+..++..+.+ +.+++|.+|.+.
T Consensus 158 ~tG~Pvr~~~~~--------~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~--- 225 (352)
T PRK12446 158 YTGSPVREEVLK--------GNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGN--- 225 (352)
T ss_pred EECCcCCccccc--------ccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCch---
Confidence 999877543110 0111111222222346799999999985443 334445554433 488899887652
Q ss_pred CCcchhcccCCchhHHHHhccCCCcEEecccc-C-HHHhhCccCcceeeeccChhHHHHHHHcCCcccC
Q 040467 321 MNSEFRANEWLPEGFEERIKDSGQGLVVQKWA-P-QVEILSHKSISAFLSHCGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p-q~~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l~ 387 (387)
+.... .+ -.++.+..|+ + -.+++.+++ ++|||||.+|+.|++++|+|+|.
T Consensus 226 ----------~~~~~-~~----~~~~~~~~f~~~~m~~~~~~ad--lvIsr~G~~t~~E~~~~g~P~I~ 277 (352)
T PRK12446 226 ----------LDDSL-QN----KEGYRQFEYVHGELPDILAITD--FVISRAGSNAIFEFLTLQKPMLL 277 (352)
T ss_pred ----------HHHHH-hh----cCCcEEecchhhhHHHHHHhCC--EEEECCChhHHHHHHHcCCCEEE
Confidence 11111 11 1244555777 3 557899977 59999999999999999999973
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.66 E-value=8.4e-15 Score=132.69 Aligned_cols=116 Identities=16% Similarity=0.140 Sum_probs=71.9
Q ss_pred EEEEEcCC-CcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCee-EEeccCCCCCCCCCCCCCCCCCCC
Q 040467 7 NIVMFPLM-AQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIH-LREIPFDGIAHDLPPCTENSDSLP 84 (387)
Q Consensus 7 ~il~~~~~-~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~ 84 (387)
||++...+ +.||+.|.++|+++|++ ||+|+|++.......+.. .++. +..+|.. ....... .
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~--g~ev~~~~~~~~~~~~~~-----~~~~~~~~~p~~------~~~~~~~-~-- 64 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN--DYEVSYIASGRSKNYISK-----YGFKVFETFPGI------KLKGEDG-K-- 64 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC--CCeEEEEEcCCHHHhhhh-----hcCcceeccCCc------eEeecCC-c--
Confidence 47776666 55999999999999986 999999987775555555 3333 3333311 1000000 0
Q ss_pred CCchhHHHH--HH-hhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHhCCceEEEcc
Q 040467 85 FHLFPNFFE--ST-LSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVG 146 (387)
Q Consensus 85 ~~~~~~~~~--~~-~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~lgiP~v~~~~ 146 (387)
......+.. .+ .........++++. +||+||+| ..+.+..+|+.+|||++.+..
T Consensus 65 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~-------~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~ 121 (321)
T TIGR00661 65 VNIVKTLRNKEYSPKKAIRREINIIREY-------NPDLIISD-FEYSTVVAAKLLKIPVICISN 121 (321)
T ss_pred CcHHHHHHhhccccHHHHHHHHHHHHhc-------CCCEEEEC-CchHHHHHHHhcCCCEEEEec
Confidence 001111111 11 11222334566666 99999999 567778899999999998754
No 31
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.47 E-value=3.7e-14 Score=112.17 Aligned_cols=125 Identities=19% Similarity=0.159 Sum_probs=80.8
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCCCCc
Q 040467 8 IVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFHL 87 (387)
Q Consensus 8 il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (387)
|+|++.|+.||++|+++||++|++ |||+|++++++.+++.+++ .|++|..++.+ .++.... ..
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~-rGh~V~~~~~~~~~~~v~~-----~Gl~~~~~~~~---~~~~~~~--------~~ 63 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRR-RGHEVRLATPPDFRERVEA-----AGLEFVPIPGD---SRLPRSL--------EP 63 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHH-TT-EEEEEETGGGHHHHHH-----TT-EEEESSSC---GGGGHHH--------HH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhc-cCCeEEEeecccceecccc-----cCceEEEecCC---cCcCccc--------ch
Confidence 789999999999999999999999 9999999999999999999 88899988742 0000000 00
Q ss_pred hhHHHHHHhh--hhHHHHHHHHhhhh----ccC-CCCCeEEEeCCCchhhHHHHHHhCCceEEEcchhH
Q 040467 88 FPNFFESTLS--FKPHFRKLINGLID----EQN-GHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGS 149 (387)
Q Consensus 88 ~~~~~~~~~~--~~~~~~~ll~~~~~----~~~-~~~pD~vV~D~~~~~~~~~a~~lgiP~v~~~~~~~ 149 (387)
...+....+. ......+.+++... ... ...+|+++.+.....+..+||++|||++.....+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~ 132 (139)
T PF03033_consen 64 LANLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPW 132 (139)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGG
T ss_pred hhhhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCc
Confidence 0011111111 11112222222211 111 11468888999888999999999999999865443
No 32
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.45 E-value=3.2e-11 Score=110.99 Aligned_cols=271 Identities=18% Similarity=0.120 Sum_probs=147.6
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCCCC
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFH 86 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (387)
||++...+..||....+.+|+.|.+ +||+|++++...... ..... ..++++..++.. .... . .
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~-~G~ev~v~~~~~~~~-~~~~~--~~~~~~~~~~~~----~~~~------~---~ 63 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRE-RGAEVLFLGTKRGLE-ARLVP--KAGIPLHTIPVG----GLRR------K---G 63 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHh-CCCEEEEEECCCcch-hhccc--ccCCceEEEEec----CcCC------C---C
Confidence 5899999999999999999999999 999999998654211 11100 035666666532 1100 0 0
Q ss_pred chhHHHHHH--hhhhHHHHHHHHhhhhccCCCCCeEEEeCCC--chhhHHHHHHhCCceEEEcchhHHHHHHHHHhhhcC
Q 040467 87 LFPNFFEST--LSFKPHFRKLINGLIDEQNGHKPVCIIADMF--FAWSAEIAQEYGIFNALFVGGGSFGFACFYSLWLNL 162 (387)
Q Consensus 87 ~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~--~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 162 (387)
....+.... -.....+..++++. +||+|++... ...+..++...++|.+.....
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~i~~~-------~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~--------------- 121 (350)
T cd03785 64 SLKKLKAPFKLLKGVLQARKILKKF-------KPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQN--------------- 121 (350)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc-------CCCEEEECCCCcchHHHHHHHHhCCCEEEEcCC---------------
Confidence 011111111 12223455666666 8999998653 334566778889998753110
Q ss_pred CCCCCCcccCCCCCCCcccCccccchhhhhcCCCChhHHHHHHHhhhhccCcEEEEechhhhcHHHHHHHHhhcCCCeEE
Q 040467 163 PHRDSDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKIGLMYFSRKLGRPVWP 242 (387)
Q Consensus 163 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~ 242 (387)
.++. . ..+. ..+.++.++..+....+. .-+.++..
T Consensus 122 -----------~~~~-----------~---------~~~~------~~~~~~~vi~~s~~~~~~--------~~~~~~~~ 156 (350)
T cd03785 122 -----------AVPG-----------L---------ANRL------LARFADRVALSFPETAKY--------FPKDKAVV 156 (350)
T ss_pred -----------CCcc-----------H---------HHHH------HHHhhCEEEEcchhhhhc--------CCCCcEEE
Confidence 0000 0 0000 111244555443322111 11356777
Q ss_pred eccccCCCCCCCCCCCCCCCChhhhccccCCCCCCeeEEEecCCCcCCCH-HHHHHHHHHHHhCCCcEEEEEcCCCCCCC
Q 040467 243 VGSLLLSTGSRAGAGKEYGISTELCKNWLDTKPCNSVIYVSFGSQNTIAA-SQMMQLAMALEACGKNFIWVVKPPLGFDM 321 (387)
Q Consensus 243 vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~-~~~~~~~~a~~~~~~~~l~~~~~~~~~~~ 321 (387)
+|......... .... .+.+...+++.+|++..|+...... +.+..+++.+.+.+..+++.+|.+.
T Consensus 157 i~n~v~~~~~~---------~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~---- 222 (350)
T cd03785 157 TGNPVREEILA---------LDRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGD---- 222 (350)
T ss_pred ECCCCchHHhh---------hhhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCcc----
Confidence 88655332100 0011 2222222334567776676542211 2222334444433445566665442
Q ss_pred CcchhcccCCchhHHHHhccCCCcEEecccc-CHHHhhCccCcceeeeccChhHHHHHHHcCCcccC
Q 040467 322 NSEFRANEWLPEGFEERIKDSGQGLVVQKWA-PQVEILSHKSISAFLSHCGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-pq~~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l~ 387 (387)
.+.+.+.+.....|+.+.+|+ +...+|+.+++ +|+++|.+++.||+++|+|+|+
T Consensus 223 ----------~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~ 277 (350)
T cd03785 223 ----------LEEVKKAYEELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAIL 277 (350)
T ss_pred ----------HHHHHHHHhccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEE
Confidence 123333332113688998998 56678988665 9999999999999999999974
No 33
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.44 E-value=1.9e-11 Score=110.47 Aligned_cols=267 Identities=18% Similarity=0.142 Sum_probs=147.8
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCc-EEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCCC
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRY-TITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPF 85 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh-~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (387)
+|++...++-||+.|.++|+.+|.+ +|+ +|.++.+....+.... +..++.+..++.. .+....
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~-~g~~~v~~~~~~~~~e~~l~---~~~~~~~~~I~~~----~~~~~~-------- 65 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAK-RGWEQVIVLGTGDGLEAFLV---KQYGIEFELIPSG----GLRRKG-------- 65 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHh-hCccEEEEecccccceeeec---cccCceEEEEecc----cccccC--------
Confidence 5889999999999999999999999 999 5777755443322222 1156777777632 211110
Q ss_pred CchhHHHHHHh--hhhHHHHHHHHhhhhccCCCCCeEEEeCCCch--hhHHHHHHhCCceEEEcchhHHHHHHHHHhhhc
Q 040467 86 HLFPNFFESTL--SFKPHFRKLINGLIDEQNGHKPVCIIADMFFA--WSAEIAQEYGIFNALFVGGGSFGFACFYSLWLN 161 (387)
Q Consensus 86 ~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~--~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~ 161 (387)
.+..+...+. ......+.++++. +||+|+.---.. .+..+|..+|||.+..-...
T Consensus 66 -~~~~~~~~~~~~~~~~~a~~il~~~-------kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~------------- 124 (357)
T COG0707 66 -SLKLLKAPFKLLKGVLQARKILKKL-------KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNA------------- 124 (357)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHc-------CCCEEEecCCccccHHHHHHHhCCCCEEEEecCC-------------
Confidence 1111212121 2233456678888 999999844333 45577777999998863211
Q ss_pred CCCCCCCcccCCCCCCCcccCccccchhhhhcCCCChhHHHHHHHhhhhccCcEEEEechhhhcHHHHHHHHhhcCCCeE
Q 040467 162 LPHRDSDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKIGLMYFSRKLGRPVW 241 (387)
Q Consensus 162 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~ 241 (387)
.+++.. +... +.++.+. .++...+ ...-+.+++
T Consensus 125 ----------~~G~an-----------------------k~~~------~~a~~V~-~~f~~~~-------~~~~~~~~~ 157 (357)
T COG0707 125 ----------VPGLAN-----------------------KILS------KFAKKVA-SAFPKLE-------AGVKPENVV 157 (357)
T ss_pred ----------CcchhH-----------------------HHhH------Hhhceee-ecccccc-------ccCCCCceE
Confidence 112110 0000 0011111 1121111 000113577
Q ss_pred EeccccCCCCCCCCCCCCCCCChhhhccccCCCCCCeeEEEecCCCcCCCH-HHHHHHHHHHHhCCCcEEEEEcCCCCCC
Q 040467 242 PVGSLLLSTGSRAGAGKEYGISTELCKNWLDTKPCNSVIYVSFGSQNTIAA-SQMMQLAMALEACGKNFIWVVKPPLGFD 320 (387)
Q Consensus 242 ~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~-~~~~~~~~a~~~~~~~~l~~~~~~~~~~ 320 (387)
.+|-....... ..+.......... ++++|+|.-||+....- +.+..++..+.+ +..++..+|.+.
T Consensus 158 ~tG~Pvr~~~~---------~~~~~~~~~~~~~-~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~--- 223 (357)
T COG0707 158 VTGIPVRPEFE---------ELPAAEVRKDGRL-DKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKND--- 223 (357)
T ss_pred EecCcccHHhh---------ccchhhhhhhccC-CCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcch---
Confidence 77754433200 0111111111111 46799999999974332 223333333333 466777666541
Q ss_pred CCcchhcccCCchhHHHHhccCCCc-EEeccccCH-HHhhCccCcceeeeccChhHHHHHHHcCCccc
Q 040467 321 MNSEFRANEWLPEGFEERIKDSGQG-LVVQKWAPQ-VEILSHKSISAFLSHCGWNSVLEALSHRVPII 386 (387)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~pq-~~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l 386 (387)
.+....... ..+ +.+.+|..+ .+++.-++ ++||++|.+|+.|++++|+|+|
T Consensus 224 -----------~~~~~~~~~--~~~~~~v~~f~~dm~~~~~~AD--LvIsRaGa~Ti~E~~a~g~P~I 276 (357)
T COG0707 224 -----------LEELKSAYN--ELGVVRVLPFIDDMAALLAAAD--LVISRAGALTIAELLALGVPAI 276 (357)
T ss_pred -----------HHHHHHHHh--hcCcEEEeeHHhhHHHHHHhcc--EEEeCCcccHHHHHHHhCCCEE
Confidence 123333332 233 778888874 44787766 4999999999999999999987
No 34
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.43 E-value=5.1e-11 Score=109.94 Aligned_cols=267 Identities=16% Similarity=0.123 Sum_probs=143.9
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcc--hhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCC
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSN--LKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSL 83 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 83 (387)
+||+|+..+..||...++.|+++|.+ +||+|++++.+.. ....++ .+++++.++.. +....
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~-~g~ev~vv~~~~~~~~~~~~~-----~g~~~~~~~~~----~~~~~------- 64 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKK-RGWEVLYLGTARGMEARLVPK-----AGIEFHFIPSG----GLRRK------- 64 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHh-CCCEEEEEECCCchhhhcccc-----CCCcEEEEecc----CcCCC-------
Confidence 35999999888999999999999999 9999999987552 122222 45566666531 11100
Q ss_pred CCCchhHHHHHH--hhhhHHHHHHHHhhhhccCCCCCeEEEeCCC--chhhHHHHHHhCCceEEEcchhHHHHHHHHHhh
Q 040467 84 PFHLFPNFFEST--LSFKPHFRKLINGLIDEQNGHKPVCIIADMF--FAWSAEIAQEYGIFNALFVGGGSFGFACFYSLW 159 (387)
Q Consensus 84 ~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~--~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~ 159 (387)
. ....+.... -.....+..++++. +||+|++... ...+..++...++|.+..... .
T Consensus 65 ~--~~~~l~~~~~~~~~~~~~~~~ik~~-------~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~-~---------- 124 (357)
T PRK00726 65 G--SLANLKAPFKLLKGVLQARKILKRF-------KPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQN-A---------- 124 (357)
T ss_pred C--hHHHHHHHHHHHHHHHHHHHHHHhc-------CCCEEEECCCcchhHHHHHHHHcCCCEEEEcCC-C----------
Confidence 0 011111111 12223345566666 8999999863 234455667789998864110 0
Q ss_pred hcCCCCCCCcccCCCCCCCcccCccccchhhhhcCCCChhHHHHHHHhhhhccCcEEEEechhhhcHHHHHHHHhhcCCC
Q 040467 160 LNLPHRDSDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKIGLMYFSRKLGRP 239 (387)
Q Consensus 160 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~ 239 (387)
+++ . ..+.. .+.++.++..+...+ .+.-+.+
T Consensus 125 ------------~~~--------------~---------~~r~~------~~~~d~ii~~~~~~~--------~~~~~~~ 155 (357)
T PRK00726 125 ------------VPG--------------L---------ANKLL------ARFAKKVATAFPGAF--------PEFFKPK 155 (357)
T ss_pred ------------Ccc--------------H---------HHHHH------HHHhchheECchhhh--------hccCCCC
Confidence 000 0 00000 011222322221111 0112367
Q ss_pred eEEeccccCCCCCCCCCCCCCCCChhhhccccCCCCCCeeEEEecCCCcCCCHHHHHHHHHHHHhCCC--cEEEEEcCCC
Q 040467 240 VWPVGSLLLSTGSRAGAGKEYGISTELCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGK--NFIWVVKPPL 317 (387)
Q Consensus 240 ~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~a~~~~~~--~~l~~~~~~~ 317 (387)
++.+|+........ ....-.+ +...++..+|++..|+... ......+.+|+++... .+++.+|.+.
T Consensus 156 i~vi~n~v~~~~~~---------~~~~~~~-~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~~~~~~~~~~~~G~g~ 223 (357)
T PRK00726 156 AVVTGNPVREEILA---------LAAPPAR-LAGREGKPTLLVVGGSQGA--RVLNEAVPEALALLPEALQVIHQTGKGD 223 (357)
T ss_pred EEEECCCCChHhhc---------ccchhhh-ccCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhhCcEEEEEcCCCc
Confidence 88888766443110 0000011 1111234567776665421 1222233366655433 4455566542
Q ss_pred CCCCCcchhcccCCchhHHHHhccCCCcEEecccc-CHHHhhCccCcceeeeccChhHHHHHHHcCCcccC
Q 040467 318 GFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWA-PQVEILSHKSISAFLSHCGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-pq~~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l~ 387 (387)
. +.+.+... .+-++.+.+|+ +..++++.+++ +|+|+|.+++.||+++|+|+|+
T Consensus 224 -------------~-~~~~~~~~-~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~ 277 (357)
T PRK00726 224 -------------L-EEVRAAYA-AGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAIL 277 (357)
T ss_pred -------------H-HHHHHHhh-cCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEE
Confidence 1 22222221 13347888998 45689999665 9999999999999999999984
No 35
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.38 E-value=8.5e-11 Score=103.89 Aligned_cols=92 Identities=14% Similarity=0.187 Sum_probs=64.4
Q ss_pred eeEEEecCCCcCCCHHHHHHHHHHHHh--CCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEeccccCHH
Q 040467 278 SVIYVSFGSQNTIAASQMMQLAMALEA--CGKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQV 355 (387)
Q Consensus 278 ~~v~vs~GS~~~~~~~~~~~~~~a~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~ 355 (387)
+.|+|+||...... ....+++++.+ .+.++.+++|... ...+.+....+. ..|+.+..++++-
T Consensus 171 ~~iLi~~GG~d~~~--~~~~~l~~l~~~~~~~~i~vv~G~~~------------~~~~~l~~~~~~-~~~i~~~~~~~~m 235 (279)
T TIGR03590 171 RRVLVSFGGADPDN--LTLKLLSALAESQINISITLVTGSSN------------PNLDELKKFAKE-YPNIILFIDVENM 235 (279)
T ss_pred CeEEEEeCCcCCcC--HHHHHHHHHhccccCceEEEEECCCC------------cCHHHHHHHHHh-CCCEEEEeCHHHH
Confidence 47999999664332 44456667665 3567788787652 011233333222 4588898999875
Q ss_pred -HhhCccCcceeeeccChhHHHHHHHcCCcccC
Q 040467 356 -EILSHKSISAFLSHCGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 356 -~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l~ 387 (387)
++|..+++ +|++|| +|++|+++.|+|+|.
T Consensus 236 ~~lm~~aDl--~Is~~G-~T~~E~~a~g~P~i~ 265 (279)
T TIGR03590 236 AELMNEADL--AIGAAG-STSWERCCLGLPSLA 265 (279)
T ss_pred HHHHHHCCE--EEECCc-hHHHHHHHcCCCEEE
Confidence 79999665 999999 999999999999974
No 36
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.30 E-value=7.8e-10 Score=95.85 Aligned_cols=302 Identities=16% Similarity=0.134 Sum_probs=157.1
Q ss_pred CCCccEEEEEcCC--CcccHHHHHHHHHHHHhC-CCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCC
Q 040467 2 AQRKENIVMFPLM--AQGHTIPFLALALHLENT-NRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTE 78 (387)
Q Consensus 2 ~~~~~~il~~~~~--~~GH~~P~l~la~~L~~~-rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 78 (387)
+++++||+|++.- +.||+.-++.||.+|.+. +|.+|++++...-...+.- . .+++|+.+|.- .....+..
T Consensus 6 ~~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~--~--~gVd~V~LPsl---~k~~~G~~ 78 (400)
T COG4671 6 ASKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPG--P--AGVDFVKLPSL---IKGDNGEY 78 (400)
T ss_pred hhccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCC--c--ccCceEecCce---EecCCCce
Confidence 3456699999985 669999999999999994 5999999986443322221 1 68899999842 11122211
Q ss_pred CCCCCCCCchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHhCCceEEEcchhHHHHHHHHHh
Q 040467 79 NSDSLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSFGFACFYSL 158 (387)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~ 158 (387)
...+... ...+..+.....+....+.. +||++|+|.+=++.. .|. .|. ..+.
T Consensus 79 ~~~d~~~----~l~e~~~~Rs~lil~t~~~f-------kPDi~IVd~~P~Glr--~EL--~pt-------------L~yl 130 (400)
T COG4671 79 GLVDLDG----DLEETKKLRSQLILSTAETF-------KPDIFIVDKFPFGLR--FEL--LPT-------------LEYL 130 (400)
T ss_pred eeeecCC----CHHHHHHHHHHHHHHHHHhc-------CCCEEEEeccccchh--hhh--hHH-------------HHHH
Confidence 1111111 12122233334455566667 999999998655411 000 000 0000
Q ss_pred hhcCCCCCCCcccCCCCCCCcccCccccchhhhhcCCCChhHHHHHHHhhhhccCcEEEEechhhhcHHHHHH-HHhhcC
Q 040467 159 WLNLPHRDSDEFLLPDFPEASRIHVTQMTKFLRLADGSDSLSVFFQKVLPQWMNADGILFNTVEELDKIGLMY-FSRKLG 237 (387)
Q Consensus 159 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~-~~~~~~ 237 (387)
....+. ..-++ ...++.+......+.++.....+.+ ..+.+++...+.+..+...+ +.....
T Consensus 131 ~~~~t~------~vL~l-----r~i~D~p~~~~~~w~~~~~~~~I~r------~yD~V~v~GdP~f~d~~~~~~~~~~i~ 193 (400)
T COG4671 131 KTTGTR------LVLGL-----RSIRDIPQELEADWRRAETVRLINR------FYDLVLVYGDPDFYDPLTEFPFAPAIR 193 (400)
T ss_pred hhcCCc------ceeeh-----HhhhhchhhhccchhhhHHHHHHHH------hheEEEEecCccccChhhcCCccHhhh
Confidence 000000 00000 0111222222221222222222222 22344544433332221111 122333
Q ss_pred CCeEEeccccCCCCCCCCCCCCCCCChhhhccccCCCCCCeeEEEecCCCcCCCHHHHHHHHHHHHh-CCCc--EEEEEc
Q 040467 238 RPVWPVGSLLLSTGSRAGAGKEYGISTELCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEA-CGKN--FIWVVK 314 (387)
Q Consensus 238 ~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~a~~~-~~~~--~l~~~~ 314 (387)
.++.++|.+. .. .+..-..|... +.+.-|+||-|--. ...+++...++|... .+.+ .++.+|
T Consensus 194 ~k~~ytG~vq-~~------------~~~~~~p~~~~-pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~~~~~ivtG 258 (400)
T COG4671 194 AKMRYTGFVQ-RS------------LPHLPLPPHEA-PEGFDILVSVGGGA-DGAELIETALAAAQLLAGLNHKWLIVTG 258 (400)
T ss_pred hheeEeEEee-cc------------CcCCCCCCcCC-CccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCCcceEEEeC
Confidence 7899999982 11 00000111111 22347888887543 446677777776655 5555 555555
Q ss_pred CCCCCCCCcchhcccCCchhHHHHhcc-C--CCcEEeccccCHH-HhhCccCcceeeeccChhHHHHHHHcCCccc
Q 040467 315 PPLGFDMNSEFRANEWLPEGFEERIKD-S--GQGLVVQKWAPQV-EILSHKSISAFLSHCGWNSVLEALSHRVPII 386 (387)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~v~~~~~~pq~-~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l 386 (387)
.. .|.....++.. . .+++.+..|-.+- .++.-+. .+|+-||+||++|=|++|+|.|
T Consensus 259 P~--------------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~--~vVSm~GYNTvCeILs~~k~aL 318 (400)
T COG4671 259 PF--------------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGAR--LVVSMGGYNTVCEILSFGKPAL 318 (400)
T ss_pred CC--------------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhh--eeeecccchhhhHHHhCCCceE
Confidence 43 44443333321 1 3688888997654 4777755 5999999999999999999976
No 37
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.27 E-value=1.4e-09 Score=99.98 Aligned_cols=113 Identities=21% Similarity=0.235 Sum_probs=68.6
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchh--hhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCC
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLK--KLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLP 84 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (387)
||+|++.+..||+...+.||++|.+ +||+|++++.+.... ...+ .++++..++.. .... . . .
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~-~g~eV~vv~~~~~~~~~~~~~-----~g~~~~~i~~~----~~~~----~-~-~ 65 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIK-RGVEVLWLGTKRGLEKRLVPK-----AGIEFYFIPVG----GLRR----K-G-S 65 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHh-CCCEEEEEeCCCcchhccccc-----CCCceEEEecc----CcCC----C-C-h
Confidence 6999999999999988899999999 999999998643211 1112 45666666532 1000 0 0 0
Q ss_pred CCchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCch--hhHHHHHHhCCceEE
Q 040467 85 FHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFA--WSAEIAQEYGIFNAL 143 (387)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~--~~~~~a~~lgiP~v~ 143 (387)
...+...+.. -.....+..++++. +||+|++..... .+..++...++|.+.
T Consensus 66 ~~~l~~~~~~-~~~~~~l~~~i~~~-------~pDvVi~~~~~~~~~~~~~~~~~~~p~v~ 118 (348)
T TIGR01133 66 FRLIKTPLKL-LKAVFQARRILKKF-------KPDAVIGFGGYVSGPAGLAAKLLGIPLFH 118 (348)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHhc-------CCCEEEEcCCcccHHHHHHHHHcCCCEEE
Confidence 0001111111 11223455566666 899999875433 344567778999874
No 38
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.15 E-value=4.7e-09 Score=97.36 Aligned_cols=111 Identities=14% Similarity=0.133 Sum_probs=68.2
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCCC
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPF 85 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (387)
.+|+|...++.||+.|. +|+++|++ +|++|+|++.... .+++.+.. ..+.+..++.. ++..
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~-~~~~~~~~g~gg~--~m~~~g~~-~~~~~~~l~v~----G~~~---------- 66 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKE-HYPNARFIGVAGP--RMAAEGCE-VLYSMEELSVM----GLRE---------- 66 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHh-cCCCcEEEEEccH--HHHhCcCc-cccChHHhhhc----cHHH----------
Confidence 58999999999999999 99999999 9999999985422 45553321 12333333211 1110
Q ss_pred CchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEE-eCCCchh--hHHHHHHhCCceEEE
Q 040467 86 HLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCII-ADMFFAW--SAEIAQEYGIFNALF 144 (387)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV-~D~~~~~--~~~~a~~lgiP~v~~ 144 (387)
.+..+... -......+.++++. +||+|| .|.-..- .+..|+.+|||.+.+
T Consensus 67 -~l~~~~~~-~~~~~~~~~~l~~~-------kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~ 119 (385)
T TIGR00215 67 -VLGRLGRL-LKIRKEVVQLAKQA-------KPDLLVGIDAPDFNLTKELKKKDPGIKIIYY 119 (385)
T ss_pred -HHHHHHHH-HHHHHHHHHHHHhc-------CCCEEEEeCCCCccHHHHHHHhhCCCCEEEE
Confidence 11111111 12233455566666 999888 4643332 223677899999875
No 39
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.13 E-value=1e-09 Score=102.10 Aligned_cols=95 Identities=17% Similarity=0.234 Sum_probs=62.8
Q ss_pred CeeEEEecCCCcCCCHHHHHHHHHHHHhC-CCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEeccccCH-
Q 040467 277 NSVIYVSFGSQNTIAASQMMQLAMALEAC-GKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQ- 354 (387)
Q Consensus 277 ~~~v~vs~GS~~~~~~~~~~~~~~a~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq- 354 (387)
+++|++.-|+.... ..+..+++++.+. +.++++..+.+. .+-+.+....+..+.|+.+.+|+++
T Consensus 202 ~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~------------~~~~~l~~~~~~~~~~v~~~g~~~~~ 267 (380)
T PRK13609 202 KKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNE------------ALKQSLEDLQETNPDALKVFGYVENI 267 (380)
T ss_pred CcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCH------------HHHHHHHHHHhcCCCcEEEEechhhH
Confidence 45777777776532 2345567777553 567776665431 0112232222222468999999986
Q ss_pred HHhhCccCcceeeeccChhHHHHHHHcCCcccC
Q 040467 355 VEILSHKSISAFLSHCGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 355 ~~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l~ 387 (387)
.+++..+++ +|+.+|..|+.||+++|+|+|+
T Consensus 268 ~~l~~~aD~--~v~~~gg~t~~EA~a~g~PvI~ 298 (380)
T PRK13609 268 DELFRVTSC--MITKPGGITLSEAAALGVPVIL 298 (380)
T ss_pred HHHHHhccE--EEeCCCchHHHHHHHhCCCEEE
Confidence 468988775 9999998899999999999974
No 40
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.06 E-value=1.3e-08 Score=94.73 Aligned_cols=110 Identities=15% Similarity=0.180 Sum_probs=64.6
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCCCC
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFH 86 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (387)
+|+|+..+.-||+.|.+ ++++|++ +++++.+++.... .+++.+.. ..+.+..++.. ++ ..
T Consensus 3 ki~i~~Ggt~G~i~~a~-l~~~L~~-~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~l~~~----g~-----------~~ 62 (380)
T PRK00025 3 RIAIVAGEVSGDLLGAG-LIRALKA-RAPNLEFVGVGGP--RMQAAGCE-SLFDMEELAVM----GL-----------VE 62 (380)
T ss_pred eEEEEecCcCHHHHHHH-HHHHHHh-cCCCcEEEEEccH--HHHhCCCc-cccCHHHhhhc----cH-----------HH
Confidence 69999999999999999 9999999 9888888874331 34442221 22223322210 10 00
Q ss_pred chhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEe-CCCchhh--HHHHHHhCCceEEE
Q 040467 87 LFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIA-DMFFAWS--AEIAQEYGIFNALF 144 (387)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~-D~~~~~~--~~~a~~lgiP~v~~ 144 (387)
....+ ...-.....++.++++. +||+|+. +.-..+. +..+.+.|||.+.+
T Consensus 63 ~~~~~-~~~~~~~~~~~~~l~~~-------kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~ 115 (380)
T PRK00025 63 VLPRL-PRLLKIRRRLKRRLLAE-------PPDVFIGIDAPDFNLRLEKKLRKAGIPTIHY 115 (380)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHc-------CCCEEEEeCCCCCCHHHHHHHHHCCCCEEEE
Confidence 00111 11122334466677777 9999875 4222222 34467789998765
No 41
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=98.92 E-value=7.1e-07 Score=85.39 Aligned_cols=89 Identities=20% Similarity=0.222 Sum_probs=54.8
Q ss_pred eEEEecCCCcCCCHHHHHHHHHHHHhC-CCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEeccccCHHH-
Q 040467 279 VIYVSFGSQNTIAASQMMQLAMALEAC-GKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVE- 356 (387)
Q Consensus 279 ~v~vs~GS~~~~~~~~~~~~~~a~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~- 356 (387)
.+++..|++.. ......+++++++. +.+++ .+|.+. .-+.+..... ..++.+.+++++.+
T Consensus 264 ~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~-ivG~G~-------------~~~~l~~~~~--~~~V~f~G~v~~~ev 325 (465)
T PLN02871 264 PLIVYVGRLGA--EKNLDFLKRVMERLPGARLA-FVGDGP-------------YREELEKMFA--GTPTVFTGMLQGDEL 325 (465)
T ss_pred eEEEEeCCCch--hhhHHHHHHHHHhCCCcEEE-EEeCCh-------------HHHHHHHHhc--cCCeEEeccCCHHHH
Confidence 44555677642 23355577787775 45544 444332 1133433344 46788999998665
Q ss_pred --hhCccCcceeeecc----ChhHHHHHHHcCCcccC
Q 040467 357 --ILSHKSISAFLSHC----GWNSVLEALSHRVPIIG 387 (387)
Q Consensus 357 --lL~~~~~~~~v~HG----G~~s~~eal~~GvP~l~ 387 (387)
++..+++ ||.-. -.+++.||+++|+|+|+
T Consensus 326 ~~~~~~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~ 360 (465)
T PLN02871 326 SQAYASGDV--FVMPSESETLGFVVLEAMASGVPVVA 360 (465)
T ss_pred HHHHHHCCE--EEECCcccccCcHHHHHHHcCCCEEE
Confidence 6666665 77433 24478999999999985
No 42
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.82 E-value=2.6e-06 Score=78.34 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=34.5
Q ss_pred CCcEEeccccCHHH---hhCccCcceeeeccC----hhHHHHHHHcCCcccC
Q 040467 343 GQGLVVQKWAPQVE---ILSHKSISAFLSHCG----WNSVLEALSHRVPIIG 387 (387)
Q Consensus 343 ~~~v~~~~~~pq~~---lL~~~~~~~~v~HGG----~~s~~eal~~GvP~l~ 387 (387)
..|+.+.+|+++.+ ++..+++ +|..+. .+++.||+++|+|+|+
T Consensus 246 ~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~ 295 (364)
T cd03814 246 YPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVA 295 (364)
T ss_pred CCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEE
Confidence 67899999999776 6777664 776654 4789999999999985
No 43
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=98.71 E-value=9.4e-06 Score=74.41 Aligned_cols=117 Identities=11% Similarity=0.134 Sum_probs=63.5
Q ss_pred EEEEEcCCC-----cccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCC
Q 040467 7 NIVMFPLMA-----QGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSD 81 (387)
Q Consensus 7 ~il~~~~~~-----~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 81 (387)
||++++... -|+-.-...++++|++ +||+|+++++........... .......... . ...
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~-~g~~v~v~~~~~~~~~~~~~~---~~~~~~~~~~---------~--~~~ 65 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAK-RGHEVAVLTAGEDPPRQDKEV---IGVVVYGRPI---------D--EVL 65 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHh-cCCceEEEeCCCCCCCccccc---ccceeecccc---------c--ccc
Confidence 466765432 5888889999999999 999999998755432222111 1111111100 0 000
Q ss_pred CCCCCc-hhHHHHHH-hhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhh---HHHHHHhCCceEEEc
Q 040467 82 SLPFHL-FPNFFEST-LSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWS---AEIAQEYGIFNALFV 145 (387)
Q Consensus 82 ~~~~~~-~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~---~~~a~~lgiP~v~~~ 145 (387)
...... ........ ......++.++++. +||+|++....... ...+...++|++...
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~ 127 (359)
T cd03823 66 RSALPRDLFHLSDYDNPAVVAEFARLLEDF-------RPDVVHFHHLQGLGVSILRAARDRGIPIVLTL 127 (359)
T ss_pred CCCchhhhhHHHhccCHHHHHHHHHHHHHc-------CCCEEEECCccchHHHHHHHHHhcCCCEEEEE
Confidence 000000 00111111 23345566677776 89999888754432 345677899988753
No 44
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=98.58 E-value=3.6e-05 Score=70.80 Aligned_cols=43 Identities=16% Similarity=0.358 Sum_probs=33.1
Q ss_pred CCcEEeccccCHHH---hhCccCcceeeec----cChhHHHHHHHcCCcccC
Q 040467 343 GQGLVVQKWAPQVE---ILSHKSISAFLSH----CGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 343 ~~~v~~~~~~pq~~---lL~~~~~~~~v~H----GG~~s~~eal~~GvP~l~ 387 (387)
..++.+.+++|+.+ ++..+++ +|.- |..+++.||+++|+|+|+
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~ 307 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVA 307 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEE
Confidence 56899999999766 5777665 5533 334789999999999985
No 45
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=98.58 E-value=3.1e-05 Score=71.64 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=31.2
Q ss_pred EEEEEcCCC----cccHHHHHHHHHHHHhCCCcEEEEEeCCcch
Q 040467 7 NIVMFPLMA----QGHTIPFLALALHLENTNRYTITFVNTPSNL 46 (387)
Q Consensus 7 ~il~~~~~~----~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~ 46 (387)
||++++... .|+..-...++++|++ +||+|++++.....
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~-~g~~v~~~~~~~~~ 43 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVK-RGHEVTVITGSPNY 43 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHh-CCceEEEEecCCCc
Confidence 366666543 4899999999999999 99999999865433
No 46
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=98.56 E-value=4.4e-05 Score=71.38 Aligned_cols=108 Identities=14% Similarity=0.118 Sum_probs=58.3
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCCCCchhHHHHHH
Q 040467 16 QGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFHLFPNFFEST 95 (387)
Q Consensus 16 ~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (387)
-|.-..+..|+++|++ +||+|++++........... ....++.+..++.. +...... ..+....
T Consensus 21 GG~~~~~~~l~~~L~~-~g~~V~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~--------~~~~~~~ 84 (398)
T cd03800 21 GGQNVYVLELARALAR-LGHEVDIFTRRIDDALPPIV-ELAPGVRVVRVPAG------PAEYLPK--------EELWPYL 84 (398)
T ss_pred CceeehHHHHHHHHhc-cCceEEEEEecCCcccCCcc-ccccceEEEecccc------cccCCCh--------hhcchhH
Confidence 4788899999999999 99999999854332221100 00156666655431 0000000 0011111
Q ss_pred hhhhHHHHHHHHhhhhccCCCCCeEEEeCCCch--hhHHHHHHhCCceEEE
Q 040467 96 LSFKPHFRKLINGLIDEQNGHKPVCIIADMFFA--WSAEIAQEYGIFNALF 144 (387)
Q Consensus 96 ~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~--~~~~~a~~lgiP~v~~ 144 (387)
......+...++... . +||+|++..... .+..+++.+++|++..
T Consensus 85 ~~~~~~~~~~~~~~~----~-~~Div~~~~~~~~~~~~~~~~~~~~~~i~~ 130 (398)
T cd03800 85 DEFADDLLRFLRREG----G-RPDLIHAHYWDSGLVALLLARRLGIPLVHT 130 (398)
T ss_pred HHHHHHHHHHHHhcC----C-CccEEEEecCccchHHHHHHhhcCCceEEE
Confidence 111222222332211 1 699999875433 4556778899998865
No 47
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=98.53 E-value=8.7e-09 Score=84.05 Aligned_cols=92 Identities=20% Similarity=0.254 Sum_probs=57.5
Q ss_pred eEEEecCCCcCCCH-HHHHHHHHHHHh--CCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEeccccC-H
Q 040467 279 VIYVSFGSQNTIAA-SQMMQLAMALEA--CGKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAP-Q 354 (387)
Q Consensus 279 ~v~vs~GS~~~~~~-~~~~~~~~a~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-q 354 (387)
+|+|+.||.....- +.+..+++.+.. ...++++.+|... . .....+......++.+.+|.+ .
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~-------------~-~~~~~~~~~~~~~v~~~~~~~~m 66 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNN-------------Y-EELKIKVENFNPNVKVFGFVDNM 66 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCE-------------C-HHHCCCHCCTTCCCEEECSSSSH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCc-------------H-HHHHHHHhccCCcEEEEechhhH
Confidence 58999998753211 112223333332 2578888887652 0 111111111126788999999 8
Q ss_pred HHhhCccCcceeeeccChhHHHHHHHcCCccc
Q 040467 355 VEILSHKSISAFLSHCGWNSVLEALSHRVPII 386 (387)
Q Consensus 355 ~~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l 386 (387)
.+++..+++ +|||||.||++|++++|+|+|
T Consensus 67 ~~~m~~aDl--vIs~aG~~Ti~E~l~~g~P~I 96 (167)
T PF04101_consen 67 AELMAAADL--VISHAGAGTIAEALALGKPAI 96 (167)
T ss_dssp HHHHHHHSE--EEECS-CHHHHHHHHCT--EE
T ss_pred HHHHHHcCE--EEeCCCccHHHHHHHcCCCee
Confidence 889999775 999999999999999999987
No 48
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.46 E-value=0.00026 Score=66.68 Aligned_cols=119 Identities=11% Similarity=0.020 Sum_probs=67.8
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCC
Q 040467 4 RKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSL 83 (387)
Q Consensus 4 ~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 83 (387)
++.||.+++....|+-.=+..+|+.|++ +||+|++++........+.... .++.++.++.. .... .
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~-~G~~V~ii~~~~~~~~~~~~~~--~~v~~~~~~~~------~~~~----~- 67 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAK-HGWKVDLVGYLETPPHDEILSN--PNITIHPLPPP------PQRL----N- 67 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHh-cCceEEEEEecCCCCCHHHhcC--CCEEEEECCCC------cccc----c-
Confidence 4567888888877777778999999999 9999999986432211110111 67777776531 0000 0
Q ss_pred CCCchhHHHHHH----hhhhHHHHHHHHhhhhccCCCCCeEEEeCCCc----h-hhHHHHHHhCCceEEEcc
Q 040467 84 PFHLFPNFFEST----LSFKPHFRKLINGLIDEQNGHKPVCIIADMFF----A-WSAEIAQEYGIFNALFVG 146 (387)
Q Consensus 84 ~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~----~-~~~~~a~~lgiP~v~~~~ 146 (387)
....+.... ......+..+++.. +||+|++.... . .+..++...++|.|..+.
T Consensus 68 ---~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h 129 (415)
T cd03816 68 ---KLPFLLFAPLKVLWQFFSLLWLLYKLR-------PADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWH 129 (415)
T ss_pred ---cchHHHHHHHHHHHHHHHHHHHHHhcC-------CCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcC
Confidence 011222221 22233333344444 79999975321 1 233445667999887544
No 49
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=98.45 E-value=3.3e-06 Score=78.60 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=35.0
Q ss_pred CcEEeccccCH-HHhhCccCcceeeeccChhHHHHHHHcCCcccC
Q 040467 344 QGLVVQKWAPQ-VEILSHKSISAFLSHCGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 344 ~~v~~~~~~pq-~~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l~ 387 (387)
.++.+.+|+++ .+++..+++ +|+.+|.+|+.||+++|+|+|+
T Consensus 265 ~~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~ 307 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIIL 307 (382)
T ss_pred CCeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEE
Confidence 46888899884 458878665 9999999999999999999984
No 50
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=98.45 E-value=3.8e-06 Score=78.40 Aligned_cols=95 Identities=14% Similarity=0.242 Sum_probs=60.3
Q ss_pred CCeeEEEecCCCcCCCHHHHHHHHHHHHh--CCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEeccccC
Q 040467 276 CNSVIYVSFGSQNTIAASQMMQLAMALEA--CGKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAP 353 (387)
Q Consensus 276 ~~~~v~vs~GS~~~~~~~~~~~~~~a~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 353 (387)
++++|++..|+... ...+..+++++.+ .+.++++..|.+. .+-+.+..... ...++.+.+|.+
T Consensus 201 ~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~------------~l~~~l~~~~~-~~~~v~~~G~~~ 265 (391)
T PRK13608 201 DKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSK------------ELKRSLTAKFK-SNENVLILGYTK 265 (391)
T ss_pred CCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCH------------HHHHHHHHHhc-cCCCeEEEeccc
Confidence 35688888888752 1334445555433 3456666655431 01122222221 135788889986
Q ss_pred H-HHhhCccCcceeeeccChhHHHHHHHcCCcccC
Q 040467 354 Q-VEILSHKSISAFLSHCGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 354 q-~~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l~ 387 (387)
+ ..++..+++ +|+-.|..|+.||+++|+|+|.
T Consensus 266 ~~~~~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~ 298 (391)
T PRK13608 266 HMNEWMASSQL--MITKPGGITISEGLARCIPMIF 298 (391)
T ss_pred hHHHHHHhhhE--EEeCCchHHHHHHHHhCCCEEE
Confidence 4 358888775 9998888899999999999984
No 51
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.44 E-value=0.00016 Score=68.05 Aligned_cols=41 Identities=24% Similarity=0.270 Sum_probs=33.1
Q ss_pred CCCccEEEEEcCC----CcccHHHHHHHHHHHHhCCC-cEEEEEeCC
Q 040467 2 AQRKENIVMFPLM----AQGHTIPFLALALHLENTNR-YTITFVNTP 43 (387)
Q Consensus 2 ~~~~~~il~~~~~----~~GH~~P~l~la~~L~~~rG-h~Vt~~~~~ 43 (387)
|.+||||+|++-- ..|=....+.++..|++ +| |+|+++.+.
T Consensus 1 ~~~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~-~G~heV~vvaP~ 46 (462)
T PLN02846 1 MQKKQHIAIFTTASLPWMTGTAVNPLFRAAYLAK-DGDREVTLVIPW 46 (462)
T ss_pred CCCCCEEEEEEcCCCCCCCCeeccHHHHHHHHHh-cCCcEEEEEecC
Confidence 4567999999863 44766777888889999 99 899999874
No 52
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.41 E-value=0.00014 Score=65.40 Aligned_cols=100 Identities=21% Similarity=0.140 Sum_probs=69.0
Q ss_pred ccHHHHHHHHHHHHhCCCcEEEEEeCC--cchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCCCCchhHHHHH
Q 040467 17 GHTIPFLALALHLENTNRYTITFVNTP--SNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFHLFPNFFES 94 (387)
Q Consensus 17 GH~~P~l~la~~L~~~rGh~Vt~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (387)
-|+.-+-++.++|.+ +||+|.+.+-+ ...+.+.. .++.+..+... + .....++...
T Consensus 11 ~hvhfFk~~I~eL~~-~GheV~it~R~~~~~~~LL~~-----yg~~y~~iG~~----g------------~~~~~Kl~~~ 68 (335)
T PF04007_consen 11 AHVHFFKNIIRELEK-RGHEVLITARDKDETEELLDL-----YGIDYIVIGKH----G------------DSLYGKLLES 68 (335)
T ss_pred hHHHHHHHHHHHHHh-CCCEEEEEEeccchHHHHHHH-----cCCCeEEEcCC----C------------CCHHHHHHHH
Confidence 499999999999999 99999998743 23455555 67788877631 1 0112344444
Q ss_pred HhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHhCCceEEEcch
Q 040467 95 TLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGG 147 (387)
Q Consensus 95 ~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~lgiP~v~~~~~ 147 (387)
..+... +..++++. +||++|+- .+..+..+|..+|+|+|.+.=+
T Consensus 69 ~~R~~~-l~~~~~~~-------~pDv~is~-~s~~a~~va~~lgiP~I~f~D~ 112 (335)
T PF04007_consen 69 IERQYK-LLKLIKKF-------KPDVAISF-GSPEAARVAFGLGIPSIVFNDT 112 (335)
T ss_pred HHHHHH-HHHHHHhh-------CCCEEEec-CcHHHHHHHHHhCCCeEEEecC
Confidence 444333 33455566 89999963 3567788999999999998543
No 53
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.39 E-value=0.00011 Score=66.93 Aligned_cols=96 Identities=11% Similarity=0.062 Sum_probs=54.4
Q ss_pred eEEEecCCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEeccccCHHH--
Q 040467 279 VIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVE-- 356 (387)
Q Consensus 279 ~v~vs~GS~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~-- 356 (387)
.+.+..|.... ......+++++++.+.++++.-.+.. . ..+-....+... ..+++.+.+++++.+
T Consensus 172 ~~i~~~Gr~~~--~Kg~~~li~~~~~~~~~l~i~G~~~~------~----~~~~~~~~~~~~-~~~~v~~~G~~~~~~~~ 238 (335)
T cd03802 172 DYLLFLGRISP--EKGPHLAIRAARRAGIPLKLAGPVSD------P----DYFYREIAPELL-DGPDIEYLGEVGGAEKA 238 (335)
T ss_pred CEEEEEEeecc--ccCHHHHHHHHHhcCCeEEEEeCCCC------H----HHHHHHHHHhcc-cCCcEEEeCCCCHHHHH
Confidence 34445566632 22344577788888877665443321 0 000011111110 146899999999864
Q ss_pred -hhCccCcceeee--ccC-hhHHHHHHHcCCcccC
Q 040467 357 -ILSHKSISAFLS--HCG-WNSVLEALSHRVPIIG 387 (387)
Q Consensus 357 -lL~~~~~~~~v~--HGG-~~s~~eal~~GvP~l~ 387 (387)
+++.+++-++-+ +-| ..++.||+++|+|+|+
T Consensus 239 ~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~ 273 (335)
T cd03802 239 ELLGNARALLFPILWEEPFGLVMIEAMACGTPVIA 273 (335)
T ss_pred HHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEE
Confidence 577777633322 233 4589999999999985
No 54
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=98.37 E-value=0.00022 Score=65.02 Aligned_cols=54 Identities=20% Similarity=0.285 Sum_probs=41.6
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhh-hhhcCCCCCCeeEEeccC
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKK-LKSSLPQNSSIHLREIPF 66 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~-~~~~~~~~~~i~~~~~~~ 66 (387)
+|++++....|+...+..++++|.+ +||+|++++....... ... .++.+..++.
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~~~~~-----~~~~~~~~~~ 55 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRA-AGYEVHVVAPPGDELEELEA-----LGVKVIPIPL 55 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHh-cCCeeEEEecCCCccccccc-----CCceEEeccc
Confidence 4788888788999999999999999 9999999987655432 333 5667766653
No 55
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=98.36 E-value=0.00057 Score=64.04 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=61.5
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCCCC
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFH 86 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (387)
||||+....-|. +-.||++|++ +||+|+++|........ .+++.+.++.... ... . ...
T Consensus 1 ~il~~~~~~p~~---~~~la~~L~~-~G~~v~~~~~~~~~~~~-------~~v~~~~~~~~~~----~~~--~----~~~ 59 (396)
T cd03818 1 RILFVHQNFPGQ---FRHLAPALAA-QGHEVVFLTEPNAAPPP-------GGVRVVRYRPPRG----PTS--G----THP 59 (396)
T ss_pred CEEEECCCCchh---HHHHHHHHHH-CCCEEEEEecCCCCCCC-------CCeeEEEecCCCC----CCC--C----CCc
Confidence 477776555444 5689999999 99999999876543211 1356665542200 000 0 111
Q ss_pred chhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHh-CCceEEEc
Q 040467 87 LFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEY-GIFNALFV 145 (387)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~l-giP~v~~~ 145 (387)
....+...........+.+. .+.. .+.+||+|++......+..+.+.+ ++|.+.++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~pdvi~~h~~~~~~~~l~~~~~~~~~v~~~ 116 (396)
T cd03818 60 YLREFEEAVLRGQAVARALL-ALRA--KGFRPDVIVAHPGWGETLFLKDVWPDAPLIGYF 116 (396)
T ss_pred cchhHHHHHHHHHHHHHHHH-HHHh--cCCCCCEEEECCccchhhhHHHhCCCCCEEEEE
Confidence 11222222222222222221 1110 111799999997666666666664 58988764
No 56
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.34 E-value=0.00027 Score=64.57 Aligned_cols=108 Identities=19% Similarity=0.120 Sum_probs=61.5
Q ss_pred EEEEcCC---C-cccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCC
Q 040467 8 IVMFPLM---A-QGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSL 83 (387)
Q Consensus 8 il~~~~~---~-~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 83 (387)
|++++.. . .|+..-+..+++.|.+ .||+|++++............ ...... .. .
T Consensus 2 I~ii~~~~~~~~~G~~~~~~~l~~~L~~-~g~~v~i~~~~~~~~~~~~~~--------~~~~~~---~~------~---- 59 (374)
T cd03801 2 ILLVTPEYPPSVGGAERHVLELARALAA-RGHEVTVLTPGDGGLPDEEEV--------GGIVVV---RP------P---- 59 (374)
T ss_pred eeEEecccCCccCcHhHHHHHHHHHHHh-cCceEEEEecCCCCCCceeee--------cCccee---cC------C----
Confidence 4555443 2 6889999999999999 999999998754432222200 000000 00 0
Q ss_pred CCCchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhhH--HHHHHhCCceEEEc
Q 040467 84 PFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSA--EIAQEYGIFNALFV 145 (387)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~--~~a~~lgiP~v~~~ 145 (387)
.. ...............+..+++.. ++|+|++........ ..+...++|.+...
T Consensus 60 ~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~ 115 (374)
T cd03801 60 PL-LRVRRLLLLLLLALRLRRLLRRE-------RFDVVHAHDWLALLAAALAARLLGIPLVLTV 115 (374)
T ss_pred cc-cccchhHHHHHHHHHHHHHhhhc-------CCcEEEEechhHHHHHHHHHHhcCCcEEEEe
Confidence 00 00001111112223344555555 899999888777554 46777899988764
No 57
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.32 E-value=9.6e-05 Score=62.89 Aligned_cols=92 Identities=20% Similarity=0.144 Sum_probs=65.1
Q ss_pred cEEEEEcCC----CcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCC
Q 040467 6 ENIVMFPLM----AQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSD 81 (387)
Q Consensus 6 ~~il~~~~~----~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 81 (387)
|||+|++-+ +.||+.-++.||++|.+ +|..++|++..+..+.+.+ .. .++.+.....
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k-~~~~~~fl~k~~~e~~~~~-~~--~~f~~~~~~~--------------- 61 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEK-RGFACLFLTKQDIEAIIHK-VY--EGFKVLEGRG--------------- 61 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHh-cCceEEEecccchhhhhhh-hh--hhccceeeec---------------
Confidence 468888776 56999999999999999 9999999998776654444 11 1222211110
Q ss_pred CCCCCchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhh---HHHHHHhCCceEEE
Q 040467 82 SLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWS---AEIAQEYGIFNALF 144 (387)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~---~~~a~~lgiP~v~~ 144 (387)
. ..+++. ++|++|.|.+..-+ -.+.++.+.+.+.+
T Consensus 62 -----------------~----n~ik~~-------k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~f 99 (318)
T COG3980 62 -----------------N----NLIKEE-------KFDLLIFDSYGLNADDFKLIKEEAGSKILIF 99 (318)
T ss_pred -----------------c----cccccc-------cCCEEEEeccCCCHHHHHHHHHHhCCcEEEe
Confidence 0 045555 89999999988744 46677899998886
No 58
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.32 E-value=0.00064 Score=62.90 Aligned_cols=36 Identities=14% Similarity=0.156 Sum_probs=29.8
Q ss_pred EEEEEcCC-CcccHHHHHHHHHHHHhCCCcEEEEEeCC
Q 040467 7 NIVMFPLM-AQGHTIPFLALALHLENTNRYTITFVNTP 43 (387)
Q Consensus 7 ~il~~~~~-~~GH~~P~l~la~~L~~~rGh~Vt~~~~~ 43 (387)
||++++.| .-|.-.-...+|+.|.+ .||+|++++..
T Consensus 2 ki~~~~~p~~gG~~~~~~~la~~L~~-~G~~v~v~~~~ 38 (371)
T cd04962 2 KIGIVCYPTYGGSGVVATELGKALAR-RGHEVHFITSS 38 (371)
T ss_pred ceeEEEEeCCCCccchHHHHHHHHHh-cCCceEEEecC
Confidence 57777765 44777889999999999 99999999864
No 59
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.25 E-value=0.00026 Score=65.22 Aligned_cols=37 Identities=11% Similarity=0.047 Sum_probs=31.2
Q ss_pred cEEEEEcCC-C-cccHHHHHHHHHHHHhCCCcEEEEEeCC
Q 040467 6 ENIVMFPLM-A-QGHTIPFLALALHLENTNRYTITFVNTP 43 (387)
Q Consensus 6 ~~il~~~~~-~-~GH~~P~l~la~~L~~~rGh~Vt~~~~~ 43 (387)
|||+++... . .|+-.-...++++|.+ +||+|++++..
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~-~G~~v~v~~~~ 39 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQA-AGVDSTMLVQE 39 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHh-cCCceeEEEee
Confidence 368888764 2 6889999999999999 99999999854
No 60
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.25 E-value=0.0004 Score=65.10 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=61.7
Q ss_pred EEEEcC---C-CcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCC
Q 040467 8 IVMFPL---M-AQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSL 83 (387)
Q Consensus 8 il~~~~---~-~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 83 (387)
|++++. | ..|--.-...++++|++ +||+|+++++........+... .++....+|.. ..... ...
T Consensus 2 I~~v~~~~~p~~GG~e~~~~~la~~L~~-~G~~V~v~~~~~~~~~~~~~~~--~~i~v~~~p~~----~~~~~----~~~ 70 (398)
T cd03796 2 ICMVSDFFYPNLGGVETHIYQLSQCLIK-RGHKVVVITHAYGNRVGIRYLT--NGLKVYYLPFV----VFYNQ----STL 70 (398)
T ss_pred eeEEeeccccccccHHHHHHHHHHHHHH-cCCeeEEEeccCCcCCCccccc--CceeEEEecce----eccCC----ccc
Confidence 555554 2 33556788999999999 9999999996432111001011 45666666532 11000 000
Q ss_pred CCCchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCch----hhHHHHHHhCCceEEE
Q 040467 84 PFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFA----WSAEIAQEYGIFNALF 144 (387)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~----~~~~~a~~lgiP~v~~ 144 (387)
..+. .....++..+++. +||+|-+-.... .+..+++..++|.|..
T Consensus 71 -----~~~~----~~~~~l~~~~~~~-------~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t 119 (398)
T cd03796 71 -----PTFF----GTFPLLRNILIRE-------RITIVHGHQAFSALAHEALLHARTMGLKTVFT 119 (398)
T ss_pred -----cchh----hhHHHHHHHHHhc-------CCCEEEECCCCchHHHHHHHHhhhcCCcEEEE
Confidence 0111 1223445556565 899998775332 2456677889998875
No 61
>PRK10307 putative glycosyl transferase; Provisional
Probab=98.21 E-value=0.0019 Score=60.86 Aligned_cols=45 Identities=9% Similarity=0.096 Sum_probs=32.1
Q ss_pred CCcEEeccccCHHH---hhCccCcceeeeccCh------hHHHHHHHcCCcccC
Q 040467 343 GQGLVVQKWAPQVE---ILSHKSISAFLSHCGW------NSVLEALSHRVPIIG 387 (387)
Q Consensus 343 ~~~v~~~~~~pq~~---lL~~~~~~~~v~HGG~------~s~~eal~~GvP~l~ 387 (387)
-+|+.+.+|+|+.+ ++..+++..+.+..+. +.+.|++++|+|+|+
T Consensus 283 l~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~ 336 (412)
T PRK10307 283 LPNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVA 336 (412)
T ss_pred CCceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEE
Confidence 45799999999765 6777776444444332 347899999999985
No 62
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.18 E-value=0.001 Score=62.08 Aligned_cols=43 Identities=19% Similarity=0.154 Sum_probs=32.0
Q ss_pred CCcEEeccccCHHH---hhCccCcceeeec---cC-hhHHHHHHHcCCcccC
Q 040467 343 GQGLVVQKWAPQVE---ILSHKSISAFLSH---CG-WNSVLEALSHRVPIIG 387 (387)
Q Consensus 343 ~~~v~~~~~~pq~~---lL~~~~~~~~v~H---GG-~~s~~eal~~GvP~l~ 387 (387)
.++|.+.+++|+.+ ++..+++ +|.. -| ..++.||+++|+|+|+
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~ 328 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIA 328 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEE
Confidence 46899999999764 6777665 5532 11 3578999999999985
No 63
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.18 E-value=0.0011 Score=60.81 Aligned_cols=37 Identities=19% Similarity=0.097 Sum_probs=29.8
Q ss_pred EEEEcCC----CcccHHHHHHHHHHHHhCCCcEEEEEeCCcc
Q 040467 8 IVMFPLM----AQGHTIPFLALALHLENTNRYTITFVNTPSN 45 (387)
Q Consensus 8 il~~~~~----~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~ 45 (387)
|+++... ..|...-...++++|.+ .||+|++++....
T Consensus 2 Il~i~~~~~~~~gG~~~~~~~l~~~L~~-~g~~v~v~~~~~~ 42 (375)
T cd03821 2 ILHVIPSFDPKYGGPVRVVLNLSKALAK-LGHEVTVATTDAG 42 (375)
T ss_pred eEEEcCCCCcccCCeehHHHHHHHHHHh-cCCcEEEEecCCC
Confidence 5555543 45999999999999999 9999999986543
No 64
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.12 E-value=0.00055 Score=62.17 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=30.7
Q ss_pred EEEEEcCC--CcccHHHHHHHHHHHHhCCCcEEEEEeCCcc
Q 040467 7 NIVMFPLM--AQGHTIPFLALALHLENTNRYTITFVNTPSN 45 (387)
Q Consensus 7 ~il~~~~~--~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~ 45 (387)
||+++... ..|+..-+..++++|.+ .||+|++++....
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~-~g~~v~v~~~~~~ 40 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDK-RGYDVTLVVLRDE 40 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHh-cCceEEEEEcCCC
Confidence 35555554 57888999999999999 9999999986543
No 65
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.12 E-value=0.0022 Score=58.06 Aligned_cols=31 Identities=19% Similarity=0.150 Sum_probs=25.4
Q ss_pred CcccHHHHHHHHHHHHhCCCcEEEEEeCCcch
Q 040467 15 AQGHTIPFLALALHLENTNRYTITFVNTPSNL 46 (387)
Q Consensus 15 ~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~ 46 (387)
..|...-+..++++|.+ +||+|++++.....
T Consensus 12 ~gG~~~~~~~l~~~L~~-~g~~v~v~~~~~~~ 42 (348)
T cd03820 12 AGGAERVLSNLANALAE-KGHEVTIISLDKGE 42 (348)
T ss_pred CCChHHHHHHHHHHHHh-CCCeEEEEecCCCC
Confidence 45666778899999999 99999999875543
No 66
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.11 E-value=0.0013 Score=60.41 Aligned_cols=94 Identities=18% Similarity=0.117 Sum_probs=54.6
Q ss_pred eeEEEecCCCcCCCHHHHHHHHHHHHhCC-CcEEEEEcCCCCCCCCcchhcccCCchhHHHHh--ccCCCcEEeccccCH
Q 040467 278 SVIYVSFGSQNTIAASQMMQLAMALEACG-KNFIWVVKPPLGFDMNSEFRANEWLPEGFEERI--KDSGQGLVVQKWAPQ 354 (387)
Q Consensus 278 ~~v~vs~GS~~~~~~~~~~~~~~a~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~pq 354 (387)
..+++..|+... ......+++++++.. .++++.-.++ ....+.... .....||.+.+|+|+
T Consensus 191 ~~~i~~~G~~~~--~K~~~~li~a~~~l~~~~l~i~G~g~--------------~~~~~~~~~~~~~~~~~V~~~g~v~~ 254 (357)
T cd03795 191 RPFFLFVGRLVY--YKGLDVLLEAAAALPDAPLVIVGEGP--------------LEAELEALAAALGLLDRVRFLGRLDD 254 (357)
T ss_pred CcEEEEeccccc--ccCHHHHHHHHHhccCcEEEEEeCCh--------------hHHHHHHHHHhcCCcceEEEcCCCCH
Confidence 356677777642 223455677777665 4444433222 111222111 112568999999997
Q ss_pred HH---hhCccCcceeee---ccC-hhHHHHHHHcCCcccC
Q 040467 355 VE---ILSHKSISAFLS---HCG-WNSVLEALSHRVPIIG 387 (387)
Q Consensus 355 ~~---lL~~~~~~~~v~---HGG-~~s~~eal~~GvP~l~ 387 (387)
.+ ++..+++.++.+ +.| ..++.||+++|+|+|+
T Consensus 255 ~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~ 294 (357)
T cd03795 255 EEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVIS 294 (357)
T ss_pred HHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEe
Confidence 54 666666633322 233 3479999999999985
No 67
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.11 E-value=0.0019 Score=59.33 Aligned_cols=97 Identities=16% Similarity=0.060 Sum_probs=58.4
Q ss_pred CcccHHHHHHHHHHHHhCCCcEEEEEeCCcc-hhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCCCCchhHHHH
Q 040467 15 AQGHTIPFLALALHLENTNRYTITFVNTPSN-LKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFHLFPNFFE 93 (387)
Q Consensus 15 ~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (387)
..|--.-...+|++|++ +||+|++++.... ...+.. .++++..++.. . . . . .....
T Consensus 9 ~gG~e~~~~~l~~~L~~-~g~~v~v~~~~~~~~~~~~~-----~~~~~~~~~~~----~--~------~-~----~~~~~ 65 (355)
T cd03819 9 SGGVERGTLELARALVE-RGHRSLVASAGGRLVAELEA-----EGSRHIKLPFI----S--K------N-P----LRILL 65 (355)
T ss_pred cCcHHHHHHHHHHHHHH-cCCEEEEEcCCCchHHHHHh-----cCCeEEEcccc----c--c------c-h----hhhHH
Confidence 35667778999999999 9999999986432 233344 45666655431 0 0 0 0 00111
Q ss_pred HHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCch--hhHHHHHHhCCceEEEc
Q 040467 94 STLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFA--WSAEIAQEYGIFNALFV 145 (387)
Q Consensus 94 ~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~--~~~~~a~~lgiP~v~~~ 145 (387)
....+..++++. +||+|++..... .+..++...++|.+...
T Consensus 66 ----~~~~l~~~~~~~-------~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~ 108 (355)
T cd03819 66 ----NVARLRRLIREE-------KVDIVHARSRAPAWSAYLAARRTRPPFVTTV 108 (355)
T ss_pred ----HHHHHHHHHHHc-------CCCEEEECCCchhHHHHHHHHhcCCCEEEEe
Confidence 112234455555 899999876443 33455667889988753
No 68
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.10 E-value=0.0023 Score=58.90 Aligned_cols=43 Identities=21% Similarity=0.283 Sum_probs=31.6
Q ss_pred CCcEEeccccCHHH---hhCccCcceeeeccCh-----hHHHHHHHcCCcccC
Q 040467 343 GQGLVVQKWAPQVE---ILSHKSISAFLSHCGW-----NSVLEALSHRVPIIG 387 (387)
Q Consensus 343 ~~~v~~~~~~pq~~---lL~~~~~~~~v~HGG~-----~s~~eal~~GvP~l~ 387 (387)
.++|.+.+++++.+ ++..+++ +|-+.-. +++.||+++|+|+|+
T Consensus 247 ~~~V~~~g~~~~~~~~~~~~~ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~ 297 (363)
T cd04955 247 DPRIIFVGPIYDQELLELLRYAAL--FYLHGHSVGGTNPSLLEAMAYGCPVLA 297 (363)
T ss_pred CCcEEEccccChHHHHHHHHhCCE--EEeCCccCCCCChHHHHHHHcCCCEEE
Confidence 56899999999875 4445444 5544332 579999999999985
No 69
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.08 E-value=0.0055 Score=56.23 Aligned_cols=37 Identities=14% Similarity=0.067 Sum_probs=29.0
Q ss_pred EEEEEcCC---CcccHHHHHHHHHHHHhCCCcEEEEEeCCc
Q 040467 7 NIVMFPLM---AQGHTIPFLALALHLENTNRYTITFVNTPS 44 (387)
Q Consensus 7 ~il~~~~~---~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~ 44 (387)
||+|++.- ..|--.-...++++|.+ +||+|++++...
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~-~g~~v~v~~~~~ 40 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSA-RGPDVLVVSVAA 40 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhh-cCCeEEEEEeec
Confidence 36666553 34777789999999999 999999998543
No 70
>PLN02275 transferase, transferring glycosyl groups
Probab=98.08 E-value=0.0043 Score=57.55 Aligned_cols=61 Identities=16% Similarity=0.075 Sum_probs=43.1
Q ss_pred CCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCc-EEEEEeCCcchhhhhhcCCCCCCeeEEecc
Q 040467 2 AQRKENIVMFPLMAQGHTIPFLALALHLENTNRY-TITFVNTPSNLKKLKSSLPQNSSIHLREIP 65 (387)
Q Consensus 2 ~~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh-~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~ 65 (387)
|..+-++.++..+-.|.-.-+..++..|++ +|| +|++++.+......+.... .++....++
T Consensus 1 ~~~~~~~~~~~~~~~g~~~r~~~~~~~l~~-~~~~~v~vi~~~~~~~~~~~~~~--~~v~v~r~~ 62 (371)
T PLN02275 1 MGRRGRAAVVVLGDFGRSPRMQYHALSLAR-QASFQVDVVAYGGSEPIPALLNH--PSIHIHLMV 62 (371)
T ss_pred CCCccEEEEEEecCCCCCHHHHHHHHHHHh-cCCceEEEEEecCCCCCHHHhcC--CcEEEEECC
Confidence 445667777777888999999999999999 886 7999986443222222111 567777775
No 71
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.07 E-value=0.0029 Score=57.94 Aligned_cols=43 Identities=16% Similarity=0.245 Sum_probs=32.9
Q ss_pred CCcEEeccccCHHH---hhCccCcceee----eccChhHHHHHHHcCCcccC
Q 040467 343 GQGLVVQKWAPQVE---ILSHKSISAFL----SHCGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 343 ~~~v~~~~~~pq~~---lL~~~~~~~~v----~HGG~~s~~eal~~GvP~l~ 387 (387)
..|+.+.+++++.+ ++..+++ +| +-|..+++.||+++|+|+|+
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~ 307 (377)
T cd03798 258 EDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVA 307 (377)
T ss_pred cceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEE
Confidence 56899999999764 5666665 54 23556789999999999985
No 72
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.07 E-value=0.0035 Score=64.22 Aligned_cols=130 Identities=17% Similarity=0.138 Sum_probs=70.4
Q ss_pred CCccEEEEEcCC---------------CcccHHHHHHHHHHHHhCCC--cEEEEEeCCcchhh--------hhhcCC---
Q 040467 3 QRKENIVMFPLM---------------AQGHTIPFLALALHLENTNR--YTITFVNTPSNLKK--------LKSSLP--- 54 (387)
Q Consensus 3 ~~~~~il~~~~~---------------~~GH~~P~l~la~~L~~~rG--h~Vt~~~~~~~~~~--------~~~~~~--- 54 (387)
.++++|++++.- +-|+..=.+.||++|++ +| |+|.++|--...+. ++....
T Consensus 167 ~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~-~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~ 245 (1050)
T TIGR02468 167 EKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGS-MPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSS 245 (1050)
T ss_pred cCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHh-CCCCCEEEEEeCCcCccccccccCCcccccccccc
Confidence 456778877642 23577788999999999 99 89999983221111 110000
Q ss_pred --------CCCCeeEEeccCCCCCCCCCCCCCCCCCCCCCchhHHHHHHhhhhHHHHHHHHh--------hhhccCCCCC
Q 040467 55 --------QNSSIHLREIPFDGIAHDLPPCTENSDSLPFHLFPNFFESTLSFKPHFRKLING--------LIDEQNGHKP 118 (387)
Q Consensus 55 --------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~~~~~~p 118 (387)
..+++..+.+|.. -...+ .+ ...++..+..+...+...+.+ ....... .|
T Consensus 246 ~~~~~~~~~~~g~rIvRip~G-----P~~~~-----l~---Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~-~p 311 (1050)
T TIGR02468 246 ENDGDEMGESSGAYIIRIPFG-----PRDKY-----IP---KEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPV-WP 311 (1050)
T ss_pred ccccccccCCCCeEEEEeccC-----CCCCC-----cC---HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCC-CC
Confidence 0045666655532 00000 01 123344444333333333222 1011111 48
Q ss_pred eEEEeCCCch--hhHHHHHHhCCceEEEcch
Q 040467 119 VCIIADMFFA--WSAEIAQEYGIFNALFVGG 147 (387)
Q Consensus 119 D~vV~D~~~~--~~~~~a~~lgiP~v~~~~~ 147 (387)
|+|-+..... .+..+++.+|||.|....+
T Consensus 312 DvIHaHyw~sG~aa~~L~~~lgVP~V~T~HS 342 (1050)
T TIGR02468 312 YVIHGHYADAGDSAALLSGALNVPMVLTGHS 342 (1050)
T ss_pred CEEEECcchHHHHHHHHHHhhCCCEEEECcc
Confidence 9999886544 5567888899998886543
No 73
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.02 E-value=0.0041 Score=57.44 Aligned_cols=98 Identities=22% Similarity=0.279 Sum_probs=59.9
Q ss_pred CeeEEEecCCCc--C-CCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEeccccC
Q 040467 277 NSVIYVSFGSQN--T-IAASQMMQLAMALEACGKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAP 353 (387)
Q Consensus 277 ~~~v~vs~GS~~--~-~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 353 (387)
++.|+|++=-.. . ...+.+..+++++.+.+.++++...... .. + ..+-..+..... ..+|+.+.+-++
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~---p~-~----~~i~~~i~~~~~-~~~~v~l~~~l~ 271 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNAD---AG-S----RIINEAIEEYVN-EHPNFRLFKSLG 271 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCC---CC-c----hHHHHHHHHHhc-CCCCEEEECCCC
Confidence 458888885432 3 4467899999999888766666653221 00 0 001111111111 035688777665
Q ss_pred ---HHHhhCccCcceeeeccChhHHHHHHHcCCccc
Q 040467 354 ---QVEILSHKSISAFLSHCGWNSVLEALSHRVPII 386 (387)
Q Consensus 354 ---q~~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l 386 (387)
...++++++ ++||.++.+- .||.+.|||+|
T Consensus 272 ~~~~l~Ll~~a~--~vitdSSggi-~EA~~lg~Pvv 304 (365)
T TIGR03568 272 QERYLSLLKNAD--AVIGNSSSGI-IEAPSFGVPTI 304 (365)
T ss_pred hHHHHHHHHhCC--EEEEcChhHH-HhhhhcCCCEE
Confidence 445777866 4999885555 99999999987
No 74
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.00 E-value=0.0025 Score=60.54 Aligned_cols=107 Identities=15% Similarity=0.088 Sum_probs=58.6
Q ss_pred ccHHHHHHHHHHHHhCCCc--EEEEEeCC--------cchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCCCC
Q 040467 17 GHTIPFLALALHLENTNRY--TITFVNTP--------SNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFH 86 (387)
Q Consensus 17 GH~~P~l~la~~L~~~rGh--~Vt~~~~~--------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (387)
|=-.-+..||++|++ +|| +|+++|.. .+....++. . .+++.+.++.. +....
T Consensus 27 G~~~~v~~La~~L~~-~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~-~--~gv~v~r~~~~------~~~~~-------- 88 (439)
T TIGR02472 27 GQTKYVLELARALAR-RSEVEQVDLVTRLIKDAKVSPDYAQPIERI-A--PGARIVRLPFG------PRRYL-------- 88 (439)
T ss_pred CcchHHHHHHHHHHh-CCCCcEEEEEeccccCcCCCCccCCCeeEe-C--CCcEEEEecCC------CCCCc--------
Confidence 444567899999999 997 99999842 111112111 1 56677766531 00000
Q ss_pred chhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCch--hhHHHHHHhCCceEEEcc
Q 040467 87 LFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFA--WSAEIAQEYGIFNALFVG 146 (387)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~--~~~~~a~~lgiP~v~~~~ 146 (387)
....+...+..+...+..++++.. . +||+|-+..... .+..+++.+++|+|....
T Consensus 89 ~~~~~~~~~~~~~~~l~~~~~~~~----~-~~DvIH~h~~~~~~~~~~~~~~~~~p~V~t~H 145 (439)
T TIGR02472 89 RKELLWPYLDELADNLLQHLRQQG----H-LPDLIHAHYADAGYVGARLSRLLGVPLIFTGH 145 (439)
T ss_pred ChhhhhhhHHHHHHHHHHHHHHcC----C-CCCEEEEcchhHHHHHHHHHHHhCCCEEEecc
Confidence 011222222333344444554321 1 699999876432 444667778999877543
No 75
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.00 E-value=0.0021 Score=59.44 Aligned_cols=96 Identities=15% Similarity=0.118 Sum_probs=58.7
Q ss_pred CeeEEEecCCCcCC-CHHHHHHHHHHHHhCCC-cEEEEEcCCCCCCCCcchhcccCCchhHHHHhccC---CCcEEeccc
Q 040467 277 NSVIYVSFGSQNTI-AASQMMQLAMALEACGK-NFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDS---GQGLVVQKW 351 (387)
Q Consensus 277 ~~~v~vs~GS~~~~-~~~~~~~~~~a~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~ 351 (387)
++.|++++|..... ....+..+++++++... ++.+...... ..-..+.+..... .+++.+.+.
T Consensus 198 ~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~------------~~~~~l~~~~~~~~~~~~~v~~~~~ 265 (363)
T cd03786 198 KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHP------------RTRPRIREAGLEFLGHHPNVLLISP 265 (363)
T ss_pred CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCC------------ChHHHHHHHHHhhccCCCCEEEECC
Confidence 45788888876543 34557778888877533 2444443321 0112222222111 357777776
Q ss_pred cCHH---HhhCccCcceeeeccChhHHHHHHHcCCcccC
Q 040467 352 APQV---EILSHKSISAFLSHCGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 352 ~pq~---~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l~ 387 (387)
.++. .++..++ +||+-.| |.+.||+++|+|+|.
T Consensus 266 ~~~~~~~~l~~~ad--~~v~~Sg-gi~~Ea~~~g~PvI~ 301 (363)
T cd03786 266 LGYLYFLLLLKNAD--LVLTDSG-GIQEEASFLGVPVLN 301 (363)
T ss_pred cCHHHHHHHHHcCc--EEEEcCc-cHHhhhhhcCCCEEe
Confidence 6654 4566655 5999999 778899999999984
No 76
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=97.99 E-value=0.0041 Score=56.96 Aligned_cols=43 Identities=19% Similarity=0.243 Sum_probs=32.8
Q ss_pred CCcEEeccccCHHH---hhCccCcceeee----------ccChhHHHHHHHcCCcccC
Q 040467 343 GQGLVVQKWAPQVE---ILSHKSISAFLS----------HCGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 343 ~~~v~~~~~~pq~~---lL~~~~~~~~v~----------HGG~~s~~eal~~GvP~l~ 387 (387)
++|+.+.+++|+++ ++..+++ +|. =|.-+++.||+++|+|+|+
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~ 290 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVIS 290 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEe
Confidence 57899999998665 5566665 554 2345799999999999985
No 77
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=97.98 E-value=0.0013 Score=62.19 Aligned_cols=98 Identities=18% Similarity=0.227 Sum_probs=61.6
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcE--EEEEe-CCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCC
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYT--ITFVN-TPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSL 83 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~--Vt~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 83 (387)
+++-+-..+.|.++-...|+++|.+ ++++ |.+.+ ++...+...+... .++....+|.+ .
T Consensus 51 ~~iW~Ha~s~Ge~~~~~~l~~~l~~-~~~~~~i~~t~~t~~~~~~~~~~~~--~~~~~~~~P~d-----~---------- 112 (425)
T PRK05749 51 PLIWFHAVSVGETRAAIPLIRALRK-RYPDLPILVTTMTPTGSERAQALFG--DDVEHRYLPYD-----L---------- 112 (425)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHHH-hCCCCcEEEeCCCccHHHHHHHhcC--CCceEEEecCC-----c----------
Confidence 4566667788999999999999999 7755 33222 2222333333211 34555566642 0
Q ss_pred CCCchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCc--hhhHHHHHHhCCceEEE
Q 040467 84 PFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFF--AWSAEIAQEYGIFNALF 144 (387)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~--~~~~~~a~~lgiP~v~~ 144 (387)
...++.+++++ +||+|+..... +..+..+++.|+|.+.+
T Consensus 113 ---------------~~~~~~~l~~~-------~Pd~v~~~~~~~~~~~l~~~~~~~ip~vl~ 153 (425)
T PRK05749 113 ---------------PGAVRRFLRFW-------RPKLVIIMETELWPNLIAELKRRGIPLVLA 153 (425)
T ss_pred ---------------HHHHHHHHHhh-------CCCEEEEEecchhHHHHHHHHHCCCCEEEE
Confidence 02566778888 99998854222 23445567889999875
No 78
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=97.94 E-value=0.0089 Score=56.15 Aligned_cols=43 Identities=12% Similarity=0.105 Sum_probs=32.3
Q ss_pred CCcEEeccccCHHH---hhCccCcceeee---c-cChhHHHHHHHcCCcccC
Q 040467 343 GQGLVVQKWAPQVE---ILSHKSISAFLS---H-CGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 343 ~~~v~~~~~~pq~~---lL~~~~~~~~v~---H-GG~~s~~eal~~GvP~l~ 387 (387)
.+++.+.+++++.+ +|..+++ +|. + |...++.||+++|+|+|+
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~ 331 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVA 331 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEE
Confidence 35799999998654 6888665 553 2 334589999999999985
No 79
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=97.88 E-value=6e-05 Score=57.59 Aligned_cols=97 Identities=19% Similarity=0.268 Sum_probs=60.9
Q ss_pred eeEEEecCCCcCCC---HHHHHHHHHHHHhCCC-cEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEeccccC
Q 040467 278 SVIYVSFGSQNTIA---ASQMMQLAMALEACGK-NFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAP 353 (387)
Q Consensus 278 ~~v~vs~GS~~~~~---~~~~~~~~~a~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 353 (387)
..+||+-||....+ .-.-.++.+.+.+.|. ++++..|.+. ...++...+-.+++.=.+..-+|-|
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~-----------~~~~d~~~~~~k~~gl~id~y~f~p 72 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQ-----------PFFGDPIDLIRKNGGLTIDGYDFSP 72 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCc-----------cCCCCHHHhhcccCCeEEEEEecCc
Confidence 37999999886322 1123346777777775 6777777663 1111111111121133344456777
Q ss_pred H-HHhhCccCcceeeeccChhHHHHHHHcCCcccC
Q 040467 354 Q-VEILSHKSISAFLSHCGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 354 q-~~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l~ 387 (387)
- .+....+++ +|.|+|.||+.|.|..|+|.|.
T Consensus 73 sl~e~I~~Adl--VIsHAGaGS~letL~l~KPliv 105 (170)
T KOG3349|consen 73 SLTEDIRSADL--VISHAGAGSCLETLRLGKPLIV 105 (170)
T ss_pred cHHHHHhhccE--EEecCCcchHHHHHHcCCCEEE
Confidence 4 555666665 9999999999999999999873
No 80
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=97.83 E-value=0.0099 Score=54.55 Aligned_cols=38 Identities=13% Similarity=0.159 Sum_probs=30.5
Q ss_pred EEEEEcC--CCcccHHHHHHHHHHHHhCCCcEEEEEeCCcc
Q 040467 7 NIVMFPL--MAQGHTIPFLALALHLENTNRYTITFVNTPSN 45 (387)
Q Consensus 7 ~il~~~~--~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~ 45 (387)
||+++.. ..-|.-.-+..++++|.+ +||+|++++....
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~-~~~~v~~i~~~~~ 40 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDR-SKIQFDFLVTSKE 40 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCc-cceEEEEEEeCCC
Confidence 3555555 466888889999999999 9999999996543
No 81
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=97.74 E-value=0.0015 Score=60.45 Aligned_cols=111 Identities=17% Similarity=0.082 Sum_probs=63.0
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCC-CcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCCC
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTN-RYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPF 85 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~r-Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (387)
||++ -.+++.|+.=+-++.++|.+ + +.++.++.+-........... -..++. .. .+..+. ..
T Consensus 2 ~i~~-~~gtr~~~~~~~p~~~~l~~-~~~~~~~~~~tg~h~~~~~~~~~------~~~i~~--~~-~~~~~~-~~----- 64 (365)
T TIGR00236 2 KVSI-VLGTRPEAIKMAPLIRALKK-YPEIDSYVIVTAQHREMLDQVLD------LFHLPP--DY-DLNIMS-PG----- 64 (365)
T ss_pred eEEE-EEecCHHHHHHHHHHHHHhh-CCCCCEEEEEeCCCHHHHHHHHH------hcCCCC--Ce-eeecCC-CC-----
Confidence 4554 56788899999999999998 5 566666665444433333111 111110 00 000000 00
Q ss_pred CchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeC--CCch-hhHHHHHHhCCceEEE
Q 040467 86 HLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIAD--MFFA-WSAEIAQEYGIFNALF 144 (387)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D--~~~~-~~~~~a~~lgiP~v~~ 144 (387)
......+......+.+++++. +||+|++- .... ++..+|..+|||++.+
T Consensus 65 ---~~~~~~~~~~~~~l~~~l~~~-------~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~ 116 (365)
T TIGR00236 65 ---QTLGEITSNMLEGLEELLLEE-------KPDIVLVQGDTTTTLAGALAAFYLQIPVGHV 116 (365)
T ss_pred ---CCHHHHHHHHHHHHHHHHHHc-------CCCEEEEeCCchHHHHHHHHHHHhCCCEEEE
Confidence 111222233345666778887 89999874 4433 5678888999998765
No 82
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=97.72 E-value=0.01 Score=55.47 Aligned_cols=121 Identities=22% Similarity=0.147 Sum_probs=67.7
Q ss_pred CCCeEEeccccCCCCCCCCCCCCCCCChhhhccccCCCCCCeeEEEecCCCcCCCHHHHHHHHHHHHhC----CCcEEEE
Q 040467 237 GRPVWPVGSLLLSTGSRAGAGKEYGISTELCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEAC----GKNFIWV 312 (387)
Q Consensus 237 ~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~a~~~~----~~~~l~~ 312 (387)
+.++.++|-...+.... .... . +++ ++++|.+--||-...-...+..+++++++. +..+++.
T Consensus 179 g~k~~~vGnPv~d~l~~---------~~~~--~-l~~--~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~ 244 (396)
T TIGR03492 179 GVRASYLGNPMMDGLEP---------PERK--P-LLT--GRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAA 244 (396)
T ss_pred CCeEEEeCcCHHhcCcc---------cccc--c-cCC--CCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEE
Confidence 35899999877654110 0000 1 222 245788888887533333344555555553 5677777
Q ss_pred EcCCCCCCCCcchhcccCCchhHHHHhcc--C--------------CCcEEecccc-CHHHhhCccCcceeeeccChhHH
Q 040467 313 VKPPLGFDMNSEFRANEWLPEGFEERIKD--S--------------GQGLVVQKWA-PQVEILSHKSISAFLSHCGWNSV 375 (387)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------------~~~v~~~~~~-pq~~lL~~~~~~~~v~HGG~~s~ 375 (387)
+.+.. .-+.+...+.. . .+++.+..+. +-.+++..+++ +|+-.|..|
T Consensus 245 ~~~~~-------------~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T- 308 (396)
T TIGR03492 245 IVPSL-------------SLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT- 308 (396)
T ss_pred eCCCC-------------CHHHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-
Confidence 73331 00111111110 0 1224444444 34568888775 999999766
Q ss_pred HHHHHcCCcccC
Q 040467 376 LEALSHRVPIIG 387 (387)
Q Consensus 376 ~eal~~GvP~l~ 387 (387)
.|+...|+|+|.
T Consensus 309 ~E~a~lg~P~Il 320 (396)
T TIGR03492 309 EQAVGLGKPVIQ 320 (396)
T ss_pred HHHHHhCCCEEE
Confidence 999999999973
No 83
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=97.70 E-value=0.012 Score=53.95 Aligned_cols=35 Identities=11% Similarity=0.094 Sum_probs=29.0
Q ss_pred EEEEcC--CCcccHHHHHHHHHHHHhCCCcEEEEEeCC
Q 040467 8 IVMFPL--MAQGHTIPFLALALHLENTNRYTITFVNTP 43 (387)
Q Consensus 8 il~~~~--~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~ 43 (387)
|+++.. ...|+.+....|+++|.+ +||+|++++..
T Consensus 2 il~~~~~~~~gG~~~~~~~l~~~L~~-~g~~v~v~~~~ 38 (360)
T cd04951 2 ILYVITGLGLGGAEKQVVDLADQFVA-KGHQVAIISLT 38 (360)
T ss_pred eEEEecCCCCCCHHHHHHHHHHhccc-CCceEEEEEEe
Confidence 555554 357899999999999999 99999999743
No 84
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=97.67 E-value=0.042 Score=50.06 Aligned_cols=51 Identities=10% Similarity=0.070 Sum_probs=34.7
Q ss_pred cCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEecc
Q 040467 12 PLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIP 65 (387)
Q Consensus 12 ~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~ 65 (387)
..+.-|.-.....++++|.+ .||+|.+++............. .++.+..++
T Consensus 8 ~~~~gG~~~~~~~l~~~l~~-~~~~v~~~~~~~~~~~~~~~~~--~~i~v~~~~ 58 (365)
T cd03807 8 GLDVGGAERMLVRLLKGLDR-DRFEHVVISLTDRGELGEELEE--AGVPVYCLG 58 (365)
T ss_pred eccCccHHHHHHHHHHHhhh-ccceEEEEecCcchhhhHHHHh--cCCeEEEEe
Confidence 33457899999999999999 9999999986443322211111 466666654
No 85
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.53 E-value=0.036 Score=51.08 Aligned_cols=43 Identities=26% Similarity=0.354 Sum_probs=32.7
Q ss_pred CCcEEeccccCHHHh---hCccCcceeeec----------cChhHHHHHHHcCCcccC
Q 040467 343 GQGLVVQKWAPQVEI---LSHKSISAFLSH----------CGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 343 ~~~v~~~~~~pq~~l---L~~~~~~~~v~H----------GG~~s~~eal~~GvP~l~ 387 (387)
..++.+.+++|++++ +..+++ +|.- |-.+++.||+++|+|+|+
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~ 299 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVA 299 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEE
Confidence 567899999997654 777665 5532 336799999999999984
No 86
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.50 E-value=0.13 Score=51.41 Aligned_cols=119 Identities=11% Similarity=-0.001 Sum_probs=65.9
Q ss_pred EEEEEcCC--CcccHHHHHHHHHHHHhCCCc--------------EEEEEeC------CcchhhhhhcCCCCCCeeEEec
Q 040467 7 NIVMFPLM--AQGHTIPFLALALHLENTNRY--------------TITFVNT------PSNLKKLKSSLPQNSSIHLREI 64 (387)
Q Consensus 7 ~il~~~~~--~~GH~~P~l~la~~L~~~rGh--------------~Vt~~~~------~~~~~~~~~~~~~~~~i~~~~~ 64 (387)
||+++... .-|==.-++.||.+|.+ +|. +|.+++. ..+...+++ .+++...+
T Consensus 283 rIl~vi~sl~~GGAEr~~~~La~~l~~-~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L~~-----~Gv~v~~l 356 (694)
T PRK15179 283 PVLMINGSLGAGGAERQFVNTAVALQS-AIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATLAD-----AGIPVSVY 356 (694)
T ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHh-cccCcccccCccCCCCcEEEEEecccccCcchHHHHHHh-----CCCeEEEe
Confidence 57766443 45777889999999999 843 5666532 124455666 67778877
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCchhHHHHH----HhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCch--hhHHHHHHhC
Q 040467 65 PFDGIAHDLPPCTENSDSLPFHLFPNFFES----TLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFA--WSAEIAQEYG 138 (387)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~--~~~~~a~~lg 138 (387)
+.. ...... ..+.....+..+... .......+..++++. +||+|.+-.... .+..++...+
T Consensus 357 ~~~----~~~~~~--~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~~-------kpDIVH~h~~~a~~lg~lAa~~~g 423 (694)
T PRK15179 357 SDM----QAWGGC--EFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRSS-------VPSVVHIWQDGSIFACALAALLAG 423 (694)
T ss_pred ccC----CccCcc--cccccchhhHHHhhhcchhHHHHHHHHHHHHHHc-------CCcEEEEeCCcHHHHHHHHHHHcC
Confidence 532 100000 000000011111111 112234456667766 899999755433 4556666789
Q ss_pred CceEEE
Q 040467 139 IFNALF 144 (387)
Q Consensus 139 iP~v~~ 144 (387)
+|.|..
T Consensus 424 vPvIv~ 429 (694)
T PRK15179 424 VPRIVL 429 (694)
T ss_pred CCEEEE
Confidence 998764
No 87
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=97.49 E-value=0.015 Score=53.75 Aligned_cols=94 Identities=16% Similarity=0.179 Sum_probs=51.9
Q ss_pred eEEEecCCCcCCCHHHHHHHHHHHHhCCCcE-EEEEcCCCCCCCCcchhcccCCchhHHHHhc--cCCCcEEeccccCH-
Q 040467 279 VIYVSFGSQNTIAASQMMQLAMALEACGKNF-IWVVKPPLGFDMNSEFRANEWLPEGFEERIK--DSGQGLVVQKWAPQ- 354 (387)
Q Consensus 279 ~v~vs~GS~~~~~~~~~~~~~~a~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~pq- 354 (387)
.+++..|.+.......+..+++++.+....+ ++.+|.+. .-+.+.+..+ ..+.+|.+.+|.++
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~-------------~~~~l~~~~~~~~l~~~v~f~G~~~~~ 247 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGS-------------DFEKCKAYSRELGIEQRIIWHGWQSQP 247 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCc-------------cHHHHHHHHHHcCCCCeEEEecccCCc
Confidence 5566777664322233556777776643232 33344332 1122222221 12568999998753
Q ss_pred -HH---hhCccCcceeeec----cChhHHHHHHHcCCcccC
Q 040467 355 -VE---ILSHKSISAFLSH----CGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 355 -~~---lL~~~~~~~~v~H----GG~~s~~eal~~GvP~l~ 387 (387)
.. .+..+++ +|.. |--.++.||+++|+|+|+
T Consensus 248 ~~~~~~~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~ 286 (359)
T PRK09922 248 WEVVQQKIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCIS 286 (359)
T ss_pred HHHHHHHHhcCcE--EEECCcccCcChHHHHHHHcCCCEEE
Confidence 33 3444444 6643 335799999999999985
No 88
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.46 E-value=0.0016 Score=59.57 Aligned_cols=95 Identities=14% Similarity=0.142 Sum_probs=55.7
Q ss_pred CCCeeEEEecCCCcCCC-H---HHHHHHHHHHHhC-CCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEec
Q 040467 275 PCNSVIYVSFGSQNTIA-A---SQMMQLAMALEAC-GKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQ 349 (387)
Q Consensus 275 ~~~~~v~vs~GS~~~~~-~---~~~~~~~~a~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 349 (387)
.+++.|++++=...+.. + ..+..+++++.+. +.++||...... .....+.+.+... +|+.+.
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p------------~~~~~i~~~l~~~-~~v~~~ 244 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNP------------RGSDIIIEKLKKY-DNVRLI 244 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-H------------HHHHHHHHHHTT--TTEEEE
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCc------------hHHHHHHHHhccc-CCEEEE
Confidence 34779999996555555 3 3455566666665 778888886331 0112344555544 588888
Q ss_pred cccCH---HHhhCccCcceeeeccChhHHH-HHHHcCCccc
Q 040467 350 KWAPQ---VEILSHKSISAFLSHCGWNSVL-EALSHRVPII 386 (387)
Q Consensus 350 ~~~pq---~~lL~~~~~~~~v~HGG~~s~~-eal~~GvP~l 386 (387)
+-+++ ..+|.+++ ++||..| ++. ||.+.|+|+|
T Consensus 245 ~~l~~~~~l~ll~~a~--~vvgdSs--GI~eEa~~lg~P~v 281 (346)
T PF02350_consen 245 EPLGYEEYLSLLKNAD--LVVGDSS--GIQEEAPSLGKPVV 281 (346)
T ss_dssp ----HHHHHHHHHHES--EEEESSH--HHHHHGGGGT--EE
T ss_pred CCCCHHHHHHHHhcce--EEEEcCc--cHHHHHHHhCCeEE
Confidence 77765 45777855 5999999 666 9999999987
No 89
>PLN02949 transferase, transferring glycosyl groups
Probab=97.44 E-value=0.083 Score=50.45 Aligned_cols=127 Identities=10% Similarity=0.031 Sum_probs=68.0
Q ss_pred CCccEEEEEcCCC---cccHHHHHHHHHHHHhCCCc--EEEEEeCCcc---hhhhhhcCCC-----CCCeeEEeccCCCC
Q 040467 3 QRKENIVMFPLMA---QGHTIPFLALALHLENTNRY--TITFVNTPSN---LKKLKSSLPQ-----NSSIHLREIPFDGI 69 (387)
Q Consensus 3 ~~~~~il~~~~~~---~GH~~P~l~la~~L~~~rGh--~Vt~~~~~~~---~~~~~~~~~~-----~~~i~~~~~~~~~~ 69 (387)
.+|.+|+|+-... .|==.-++..+.+|.+ +|| +|++.|+.-. .+.+.+.... +..+.|+.+..
T Consensus 31 ~~~~~v~f~HP~~~~ggG~ERvl~~a~~~l~~-~~~~~~v~iyt~~~d~~~~~~l~~~~~~~~i~~~~~~~~v~l~~--- 106 (463)
T PLN02949 31 SRKRAVGFFHPYTNDGGGGERVLWCAVRAIQE-ENPDLDCVIYTGDHDASPDSLAARARDRFGVELLSPPKVVHLRK--- 106 (463)
T ss_pred CCCcEEEEECCCCCCCCChhhHHHHHHHHHHh-hCCCCeEEEEcCCCCCCHHHHHHHHHhhcceecCCCceEEEecc---
Confidence 3455666664432 2555889999999999 998 8888874311 2211111100 01223332210
Q ss_pred CCCCCCCCCCCCCCCCCchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCch-hhHHHHHHhCCceEEEcchh
Q 040467 70 AHDLPPCTENSDSLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFA-WSAEIAQEYGIFNALFVGGG 148 (387)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~-~~~~~a~~lgiP~v~~~~~~ 148 (387)
.+-++.. ....+..+..++..+.-.++.+.+ . .| .|++|.+.+ ....+++.+++|.+.+...|
T Consensus 107 ~~~~~~~-------~~~~~t~~~~~~~~~~l~~~~~~~-~-------~p-~v~vDt~~~~~~~pl~~~~~~~v~~yvH~p 170 (463)
T PLN02949 107 RKWIEEE-------TYPRFTMIGQSLGSVYLAWEALCK-F-------TP-LYFFDTSGYAFTYPLARLFGCKVVCYTHYP 170 (463)
T ss_pred ccccccc-------cCCceehHHHHHHHHHHHHHHHHh-c-------CC-CEEEeCCCcccHHHHHHhcCCcEEEEEeCC
Confidence 0111111 111223444555555555555543 3 45 588999885 56677776699999887655
Q ss_pred H
Q 040467 149 S 149 (387)
Q Consensus 149 ~ 149 (387)
.
T Consensus 171 ~ 171 (463)
T PLN02949 171 T 171 (463)
T ss_pred c
Confidence 4
No 90
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=97.39 E-value=0.027 Score=51.56 Aligned_cols=43 Identities=21% Similarity=0.250 Sum_probs=32.5
Q ss_pred CCcEEeccccCHHH---hhCccCcceeeec----cChhHHHHHHHcCCcccC
Q 040467 343 GQGLVVQKWAPQVE---ILSHKSISAFLSH----CGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 343 ~~~v~~~~~~pq~~---lL~~~~~~~~v~H----GG~~s~~eal~~GvP~l~ 387 (387)
..++.+.+++|+.+ ++..+++ +|.- |..+++.||+++|+|+|+
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~ 301 (365)
T cd03809 252 GDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIA 301 (365)
T ss_pred CCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEe
Confidence 67899999998764 5677665 4422 334589999999999985
No 91
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=97.36 E-value=0.0002 Score=51.70 Aligned_cols=55 Identities=15% Similarity=0.294 Sum_probs=46.4
Q ss_pred ChhhhccccCCCCCCeeEEEecCCCcCC---CH--HHHHHHHHHHHhCCCcEEEEEcCCC
Q 040467 263 STELCKNWLDTKPCNSVIYVSFGSQNTI---AA--SQMMQLAMALEACGKNFIWVVKPPL 317 (387)
Q Consensus 263 ~~~~~~~~l~~~~~~~~v~vs~GS~~~~---~~--~~~~~~~~a~~~~~~~~l~~~~~~~ 317 (387)
.+..+.+|+...++++.|++|+||.... .. ..+..++++++++|..+|.++....
T Consensus 26 G~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~ 85 (97)
T PF06722_consen 26 GPAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQ 85 (97)
T ss_dssp SSEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCC
T ss_pred CCCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHH
Confidence 4577889999988899999999998653 22 4788899999999999999998664
No 92
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=97.36 E-value=0.087 Score=49.01 Aligned_cols=41 Identities=27% Similarity=0.468 Sum_probs=27.7
Q ss_pred cEE-eccccCHHH---hhCccCcceeeec----cChhHHHHHHHcCCcccC
Q 040467 345 GLV-VQKWAPQVE---ILSHKSISAFLSH----CGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 345 ~v~-~~~~~pq~~---lL~~~~~~~~v~H----GG~~s~~eal~~GvP~l~ 387 (387)
++. +..++++.+ ++..+++ +|.= |...++.||+++|+|+|+
T Consensus 261 ~v~~~~~~~~~~~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~ 309 (388)
T TIGR02149 261 GIIWINKMLPKEELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVA 309 (388)
T ss_pred ceEEecCCCCHHHHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEE
Confidence 344 446787654 5777665 6542 334578999999999985
No 93
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.35 E-value=0.089 Score=50.63 Aligned_cols=22 Identities=14% Similarity=-0.050 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeC
Q 040467 20 IPFLALALHLENTNRYTITFVNT 42 (387)
Q Consensus 20 ~P~l~la~~L~~~rGh~Vt~~~~ 42 (387)
.-.-.|+++|++ +||+|+++++
T Consensus 20 ~~~~~L~~aL~~-~G~~V~Vi~p 41 (476)
T cd03791 20 DVVGALPKALAK-LGHDVRVIMP 41 (476)
T ss_pred HHHHHHHHHHHH-CCCeEEEEec
Confidence 345679999999 9999999985
No 94
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=97.29 E-value=0.071 Score=48.79 Aligned_cols=98 Identities=17% Similarity=0.238 Sum_probs=68.8
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCC--CcEEEEEe-CCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCC
Q 040467 8 IVMFPLMAQGHTIPFLALALHLENTN--RYTITFVN-TPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLP 84 (387)
Q Consensus 8 il~~~~~~~GH~~P~l~la~~L~~~r--Gh~Vt~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (387)
.+-+-.-|.|-++-.++|.++|++ + ++.|++-+ ++.-.+.+.+.-. ..+....+|.+
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~-~~P~~~ilvTt~T~Tg~e~a~~~~~--~~v~h~YlP~D----------------- 110 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRE-RFPDLRILVTTMTPTGAERAAALFG--DSVIHQYLPLD----------------- 110 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHH-hCCCCCEEEEecCccHHHHHHHHcC--CCeEEEecCcC-----------------
Confidence 555666788999999999999999 6 88888777 4444555555433 44667777753
Q ss_pred CCchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEE-eCCCch-hhHHHHHHhCCceEEEc
Q 040467 85 FHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCII-ADMFFA-WSAEIAQEYGIFNALFV 145 (387)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV-~D~~~~-~~~~~a~~lgiP~v~~~ 145 (387)
....++.+++.+ +||++| ++.=.+ ....-+++.|+|.+.+.
T Consensus 111 -------------~~~~v~rFl~~~-------~P~l~Ii~EtElWPnli~e~~~~~~p~~LvN 153 (419)
T COG1519 111 -------------LPIAVRRFLRKW-------RPKLLIIMETELWPNLINELKRRGIPLVLVN 153 (419)
T ss_pred -------------chHHHHHHHHhc-------CCCEEEEEeccccHHHHHHHHHcCCCEEEEe
Confidence 122567788888 898654 555455 44566778999998873
No 95
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.19 E-value=0.036 Score=46.83 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=24.6
Q ss_pred CcccHHHHHHHHHHHHhCCCcEEEEEe
Q 040467 15 AQGHTIPFLALALHLENTNRYTITFVN 41 (387)
Q Consensus 15 ~~GH~~P~l~la~~L~~~rGh~Vt~~~ 41 (387)
..|+-.....+++.|.+ +||+|+++.
T Consensus 12 ~~G~~~~~~~l~~~L~~-~g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALAR-RGHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHH-cCCeEEEEE
Confidence 56999999999999999 999999998
No 96
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=97.07 E-value=0.024 Score=52.07 Aligned_cols=137 Identities=20% Similarity=0.176 Sum_probs=68.5
Q ss_pred hhhcHHHHHHHHhhcCCCeEEeccccCCCCCCCCCCCCCCCChhhhccc-cCCCCCCeeEEEecCCCcCCCHHHHHHHHH
Q 040467 222 EELDKIGLMYFSRKLGRPVWPVGSLLLSTGSRAGAGKEYGISTELCKNW-LDTKPCNSVIYVSFGSQNTIAASQMMQLAM 300 (387)
Q Consensus 222 ~~le~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~ 300 (387)
.-+|.+++ +..+-+..|||..+.+.... ...+....+. ++.. +++|.+=-||-..-=...+-.+++
T Consensus 141 fPFE~~~y----~~~g~~~~~VGHPl~d~~~~-------~~~~~~~~~~~l~~~--~~iIaLLPGSR~~EI~rllP~~l~ 207 (373)
T PF02684_consen 141 FPFEPEFY----KKHGVPVTYVGHPLLDEVKP-------EPDRAEAREKLLDPD--KPIIALLPGSRKSEIKRLLPIFLE 207 (373)
T ss_pred CcccHHHH----hccCCCeEEECCcchhhhcc-------CCCHHHHHHhcCCCC--CcEEEEeCCCCHHHHHHHHHHHHH
Confidence 44565543 33456899999777664211 1122233222 4443 669999999874322222333455
Q ss_pred HHHh-----CCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEe-ccccCHHHhhCccCcceeeeccChhH
Q 040467 301 ALEA-----CGKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVV-QKWAPQVEILSHKSISAFLSHCGWNS 374 (387)
Q Consensus 301 a~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~pq~~lL~~~~~~~~v~HGG~~s 374 (387)
+++. .+.++++...... ....+..-......++.+ ...-.-.+++..+++ .+.-.| ..
T Consensus 208 aa~~l~~~~p~l~fvvp~a~~~-------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SG-Ta 271 (373)
T PF02684_consen 208 AAKLLKKQRPDLQFVVPVAPEV-------------HEELIEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASG-TA 271 (373)
T ss_pred HHHHHHHhCCCeEEEEecCCHH-------------HHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCC-HH
Confidence 5433 4556666543321 111111111101222222 122234557777665 444444 46
Q ss_pred HHHHHHcCCcccC
Q 040467 375 VLEALSHRVPIIG 387 (387)
Q Consensus 375 ~~eal~~GvP~l~ 387 (387)
|.|+...|+|||.
T Consensus 272 TLE~Al~g~P~Vv 284 (373)
T PF02684_consen 272 TLEAALLGVPMVV 284 (373)
T ss_pred HHHHHHhCCCEEE
Confidence 8999999999984
No 97
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.05 E-value=0.059 Score=50.48 Aligned_cols=43 Identities=26% Similarity=0.376 Sum_probs=31.8
Q ss_pred CCcEEeccccCH-HHhhCccCcceee--ec--cCh-hHHHHHHHcCCcccC
Q 040467 343 GQGLVVQKWAPQ-VEILSHKSISAFL--SH--CGW-NSVLEALSHRVPIIG 387 (387)
Q Consensus 343 ~~~v~~~~~~pq-~~lL~~~~~~~~v--~H--GG~-~s~~eal~~GvP~l~ 387 (387)
.++|.+.+++++ ..++..+++ +| .+ .|. +.+.||+++|+|+|+
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~ 327 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVA 327 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEe
Confidence 467888899884 347778776 55 22 454 479999999999985
No 98
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=97.02 E-value=0.064 Score=51.88 Aligned_cols=139 Identities=15% Similarity=0.067 Sum_probs=70.8
Q ss_pred hhhcHHHHHHHHhhcCCCeEEeccccCCCCCCCCCCCCCCCChhhhccccCCCCCCeeEEEecCCCcCCCHHHHHHHHHH
Q 040467 222 EELDKIGLMYFSRKLGRPVWPVGSLLLSTGSRAGAGKEYGISTELCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMA 301 (387)
Q Consensus 222 ~~le~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~a 301 (387)
..+|.+++. ..+-+..+||..+.+.... ....++..+-+.-.+++++|-+=-||-...=...+-.+++|
T Consensus 369 fPFE~~~y~----~~gv~v~yVGHPL~d~i~~-------~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~a 437 (608)
T PRK01021 369 LPFEQNLFK----DSPLRTVYLGHPLVETISS-------FSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQA 437 (608)
T ss_pred CccCHHHHH----hcCCCeEEECCcHHhhccc-------CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 455666443 3567899999777554110 11222233333333346789998998753223334446666
Q ss_pred HH--hC--CCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCC-CcEEeccccCHHHhhCccCcceeeeccChhHHH
Q 040467 302 LE--AC--GKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSG-QGLVVQKWAPQVEILSHKSISAFLSHCGWNSVL 376 (387)
Q Consensus 302 ~~--~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~pq~~lL~~~~~~~~v~HGG~~s~~ 376 (387)
.+ .. +.++++....+. ..+.+.+.....+ -.+.+..--...+++..+++ .+.-+|- .+.
T Consensus 438 a~~~~l~~~l~fvvp~a~~~-------------~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aTL 501 (608)
T PRK01021 438 FLASSLASTHQLLVSSANPK-------------YDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IVL 501 (608)
T ss_pred HHHHHhccCeEEEEecCchh-------------hHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HHH
Confidence 65 32 445655432221 1111222221001 01122211012578888665 6666664 578
Q ss_pred HHHHcCCcccC
Q 040467 377 EALSHRVPIIG 387 (387)
Q Consensus 377 eal~~GvP~l~ 387 (387)
|+...|+|||.
T Consensus 502 EaAL~g~PmVV 512 (608)
T PRK01021 502 ETALNQTPTIV 512 (608)
T ss_pred HHHHhCCCEEE
Confidence 99999999984
No 99
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.02 E-value=0.32 Score=45.99 Aligned_cols=42 Identities=29% Similarity=0.215 Sum_probs=31.0
Q ss_pred CCcEEeccccCHHH---hhCccCcceeee-----ccChhHHHHHHHcCCcccC
Q 040467 343 GQGLVVQKWAPQVE---ILSHKSISAFLS-----HCGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 343 ~~~v~~~~~~pq~~---lL~~~~~~~~v~-----HGG~~s~~eal~~GvP~l~ 387 (387)
.++|.+.+++|+.+ +|..+++ +|+ |-| .++.||+++|+|+|+
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fg-i~~lEAMa~G~pvIa 353 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFG-IGVVEYMAAGLIPLA 353 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcc-cHHHHHHHcCCcEEE
Confidence 46899999999765 6666554 553 233 388999999999874
No 100
>PRK00654 glgA glycogen synthase; Provisional
Probab=96.98 E-value=0.23 Score=47.63 Aligned_cols=37 Identities=14% Similarity=-0.021 Sum_probs=29.1
Q ss_pred cEEEEEcCC------CcccHHHHHHHHHHHHhCCCcEEEEEeCC
Q 040467 6 ENIVMFPLM------AQGHTIPFLALALHLENTNRYTITFVNTP 43 (387)
Q Consensus 6 ~~il~~~~~------~~GH~~P~l~la~~L~~~rGh~Vt~~~~~ 43 (387)
|||+++++- .-|--.-.-.|+++|++ +||+|+++++.
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~-~G~~V~v~~p~ 43 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAA-LGHDVRVLLPG 43 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHH-CCCcEEEEecC
Confidence 368888764 33555667899999999 99999999853
No 101
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=96.94 E-value=0.068 Score=49.04 Aligned_cols=87 Identities=16% Similarity=0.221 Sum_probs=54.5
Q ss_pred EEEecCCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEeccccCHHH---
Q 040467 280 IYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVE--- 356 (387)
Q Consensus 280 v~vs~GS~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~--- 356 (387)
.++..|++.. ......+++|+++.+.++++. |.+. ..+.+.+ .. .+||.+.+++|+.+
T Consensus 197 ~il~~G~~~~--~K~~~~li~a~~~~~~~l~iv-G~g~-------------~~~~l~~-~~--~~~V~~~g~~~~~~~~~ 257 (351)
T cd03804 197 YYLSVGRLVP--YKRIDLAIEAFNKLGKRLVVI-GDGP-------------ELDRLRA-KA--GPNVTFLGRVSDEELRD 257 (351)
T ss_pred EEEEEEcCcc--ccChHHHHHHHHHCCCcEEEE-ECCh-------------hHHHHHh-hc--CCCEEEecCCCHHHHHH
Confidence 3455676642 233566778888877776554 4332 1122222 22 68899999999854
Q ss_pred hhCccCcceeee--ccCh-hHHHHHHHcCCcccC
Q 040467 357 ILSHKSISAFLS--HCGW-NSVLEALSHRVPIIG 387 (387)
Q Consensus 357 lL~~~~~~~~v~--HGG~-~s~~eal~~GvP~l~ 387 (387)
++..+++ +|. .-|. .++.||+++|+|+|+
T Consensus 258 ~~~~ad~--~v~ps~e~~g~~~~Eama~G~Pvi~ 289 (351)
T cd03804 258 LYARARA--FLFPAEEDFGIVPVEAMASGTPVIA 289 (351)
T ss_pred HHHhCCE--EEECCcCCCCchHHHHHHcCCCEEE
Confidence 6777665 553 3333 467899999999985
No 102
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=96.88 E-value=0.38 Score=44.67 Aligned_cols=38 Identities=18% Similarity=0.135 Sum_probs=30.0
Q ss_pred EEEEEcC-CCcccHHHHHHHHHHHHhCCCcEEEEEeCCcc
Q 040467 7 NIVMFPL-MAQGHTIPFLALALHLENTNRYTITFVNTPSN 45 (387)
Q Consensus 7 ~il~~~~-~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~ 45 (387)
-|++++. ....+..--.+++.+|++ +||+|.|+.+...
T Consensus 6 ~~~~~~~~~w~~~~~~~qhl~~~~a~-~~~~vl~v~~~~~ 44 (373)
T cd04950 6 DILVFSADDWDFLWQRPQHLAARLAE-RGNRVLYVEPPGL 44 (373)
T ss_pred eEEEecccCcCCCCCCHHHHHHHHHh-CCCeEEEEeCCCc
Confidence 3455544 455688889999999999 9999999988765
No 103
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=96.77 E-value=0.45 Score=44.03 Aligned_cols=91 Identities=18% Similarity=0.202 Sum_probs=55.6
Q ss_pred CcccHHHHHHHHHHHHhCCCcEEEEEeCCc---chhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCCCCchhHH
Q 040467 15 AQGHTIPFLALALHLENTNRYTITFVNTPS---NLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFHLFPNF 91 (387)
Q Consensus 15 ~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (387)
..|--+-++.|++.|.+ +||++++++... ....+.+ .++.++.++.. . ...+.
T Consensus 13 ~GG~e~~~~~l~~~l~~-~~~~~~v~~~~~~~~~~~~~~~-----~~i~~~~~~~~-------~---------~~~~~-- 68 (374)
T TIGR03088 13 VGGLENGLVNLINHLPA-DRYRHAVVALTEVSAFRKRIQR-----PDVAFYALHKQ-------P---------GKDVA-- 68 (374)
T ss_pred CCcHHHHHHHHHhhccc-cccceEEEEcCCCChhHHHHHh-----cCceEEEeCCC-------C---------CCChH--
Confidence 34666889999999999 999998887432 2333444 56777766421 0 00001
Q ss_pred HHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCch-hhHHHHHHhCCceE
Q 040467 92 FESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFA-WSAEIAQEYGIFNA 142 (387)
Q Consensus 92 ~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~-~~~~~a~~lgiP~v 142 (387)
....+..++++. +||+|-+..... .+..++...++|..
T Consensus 69 ------~~~~l~~~l~~~-------~~Divh~~~~~~~~~~~~~~~~~~~~~ 107 (374)
T TIGR03088 69 ------VYPQLYRLLRQL-------RPDIVHTRNLAALEAQLPAALAGVPAR 107 (374)
T ss_pred ------HHHHHHHHHHHh-------CCCEEEEcchhHHHHHHHHHhcCCCeE
Confidence 112355566666 899998764433 33455666788853
No 104
>PLN02501 digalactosyldiacylglycerol synthase
Probab=96.76 E-value=0.67 Score=45.87 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=30.3
Q ss_pred cEEeccccCHH-HhhCccCcceeeec----cChhHHHHHHHcCCcccC
Q 040467 345 GLVVQKWAPQV-EILSHKSISAFLSH----CGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 345 ~v~~~~~~pq~-~lL~~~~~~~~v~H----GG~~s~~eal~~GvP~l~ 387 (387)
++.+.++.++. .++..+++ ||.= |=.+++.||+++|+|+|+
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVA 647 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVC 647 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEE
Confidence 46677777755 48888665 7652 335689999999999985
No 105
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.53 E-value=0.047 Score=42.54 Aligned_cols=101 Identities=16% Similarity=0.175 Sum_probs=65.0
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhh-hhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCCC
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKL-KSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPF 85 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (387)
+||+++.....| ...+++.|.+ +||+|++++.....+.. .. .++.+..++.. . .
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~-~g~~V~ii~~~~~~~~~~~~-----~~i~~~~~~~~-------~------k--- 55 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKK-RGYDVHIITPRNDYEKYEII-----EGIKVIRLPSP-------R------K--- 55 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHH-CCCEEEEEEcCCCchhhhHh-----CCeEEEEecCC-------C------C---
Confidence 477887776666 4578999999 99999999985543222 23 67778877421 0 0
Q ss_pred CchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCch---hhHHHHHHhC-CceEEEc
Q 040467 86 HLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFA---WSAEIAQEYG-IFNALFV 145 (387)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~---~~~~~a~~lg-iP~v~~~ 145 (387)
....+ .. .. .+..++++. +||+|.+..... .+..++...+ +|.+...
T Consensus 56 -~~~~~---~~-~~-~l~k~ik~~-------~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~ 106 (139)
T PF13477_consen 56 -SPLNY---IK-YF-RLRKIIKKE-------KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTV 106 (139)
T ss_pred -ccHHH---HH-HH-HHHHHhccC-------CCCEEEEecCChHHHHHHHHHHHcCCCCEEEEe
Confidence 00111 11 22 566777777 999998777654 2334556678 8988653
No 106
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=96.48 E-value=0.15 Score=46.58 Aligned_cols=91 Identities=15% Similarity=0.062 Sum_probs=50.8
Q ss_pred eeEEEecCCCcCCCHHHHHHHHHHHHhCCCc-EEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEeccccCHHH
Q 040467 278 SVIYVSFGSQNTIAASQMMQLAMALEACGKN-FIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVE 356 (387)
Q Consensus 278 ~~v~vs~GS~~~~~~~~~~~~~~a~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~ 356 (387)
++|.+--||-...-...+-.++++..+...+ ..+.+.... . . +.+.+.... ...+.+.+ .-.+
T Consensus 168 ~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~-----------~-~-~~i~~~~~~-~~~~~~~~--~~~~ 231 (347)
T PRK14089 168 GTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFF-----------K-G-KDLKEIYGD-ISEFEISY--DTHK 231 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCC-----------c-H-HHHHHHHhc-CCCcEEec--cHHH
Confidence 5888888887543334444455666553322 222232221 0 1 222222210 11222322 3356
Q ss_pred hhCccCcceeeeccChhHHHHHHHcCCcccC
Q 040467 357 ILSHKSISAFLSHCGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 357 lL~~~~~~~~v~HGG~~s~~eal~~GvP~l~ 387 (387)
++..+++ .|+-.|..|. |+..+|+|||.
T Consensus 232 ~m~~aDl--al~~SGT~TL-E~al~g~P~Vv 259 (347)
T PRK14089 232 ALLEAEF--AFICSGTATL-EAALIGTPFVL 259 (347)
T ss_pred HHHhhhH--HHhcCcHHHH-HHHHhCCCEEE
Confidence 8888665 9999999999 99999999973
No 107
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=96.43 E-value=0.95 Score=43.54 Aligned_cols=36 Identities=11% Similarity=0.004 Sum_probs=27.8
Q ss_pred cEEEEEcCC------CcccHHHHHHHHHHHHhCCCcEEEEEeC
Q 040467 6 ENIVMFPLM------AQGHTIPFLALALHLENTNRYTITFVNT 42 (387)
Q Consensus 6 ~~il~~~~~------~~GH~~P~l~la~~L~~~rGh~Vt~~~~ 42 (387)
|||+++++- .-|=-.-.-.|+++|++ +||+|.++++
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~-~G~~v~v~~p 42 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAA-LGHDVRVLLP 42 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHH-cCCeEEEEec
Confidence 468888764 22444556889999999 9999999985
No 108
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.37 E-value=0.63 Score=40.92 Aligned_cols=106 Identities=18% Similarity=0.140 Sum_probs=72.4
Q ss_pred CCCcccHHHHHHHHHHHHhCCCcEEEEEeC--CcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCCCCch-h
Q 040467 13 LMAQGHTIPFLALALHLENTNRYTITFVNT--PSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFHLF-P 89 (387)
Q Consensus 13 ~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 89 (387)
+.-.-|+.-+-.+-++|.+ +||+|.+-+- ....+.+.. -|+.+.++.-. + ...+ .
T Consensus 7 I~n~~hvhfFk~lI~elek-kG~ev~iT~rd~~~v~~LLd~-----ygf~~~~Igk~----g------------~~tl~~ 64 (346)
T COG1817 7 IGNPPHVHFFKNLIWELEK-KGHEVLITCRDFGVVTELLDL-----YGFPYKSIGKH----G------------GVTLKE 64 (346)
T ss_pred cCCcchhhHHHHHHHHHHh-CCeEEEEEEeecCcHHHHHHH-----hCCCeEeeccc----C------------CccHHH
Confidence 3445688999999999999 9999988773 223445555 67778877521 1 0011 2
Q ss_pred HHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHhCCceEEEcchhH
Q 040467 90 NFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGS 149 (387)
Q Consensus 90 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~lgiP~v~~~~~~~ 149 (387)
.+.....+.. .+-+++.+. +||+.+. -.+..+..+|-.+|+|++.+.-+..
T Consensus 65 Kl~~~~eR~~-~L~ki~~~~-------kpdv~i~-~~s~~l~rvafgLg~psIi~~D~eh 115 (346)
T COG1817 65 KLLESAERVY-KLSKIIAEF-------KPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEH 115 (346)
T ss_pred HHHHHHHHHH-HHHHHHhhc-------CCceEee-cCCcchhhHHhhcCCceEEecCChh
Confidence 3333333222 355667777 9999999 7788899999999999999854443
No 109
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=96.36 E-value=0.016 Score=54.45 Aligned_cols=100 Identities=24% Similarity=0.348 Sum_probs=58.0
Q ss_pred CeeEEEecCCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEeccccCHHH
Q 040467 277 NSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVE 356 (387)
Q Consensus 277 ~~~v~vs~GS~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~ 356 (387)
..++|.||.+....+++.+..-.+.|++.+.-.+|....+. .++ ..+-..+. +.+=.++.+.+.++.++.+
T Consensus 284 d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~----~~~----~~l~~~~~-~~Gv~~~Ri~f~~~~~~~e 354 (468)
T PF13844_consen 284 DAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPA----SGE----ARLRRRFA-AHGVDPDRIIFSPVAPREE 354 (468)
T ss_dssp SSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETST----THH----HHHHHHHH-HTTS-GGGEEEEE---HHH
T ss_pred CceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCH----HHH----HHHHHHHH-HcCCChhhEEEcCCCCHHH
Confidence 45999999999999999999999999998888888876553 000 00111111 1111145677888888665
Q ss_pred hh---CccCcceee---eccChhHHHHHHHcCCcccC
Q 040467 357 IL---SHKSISAFL---SHCGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 357 lL---~~~~~~~~v---~HGG~~s~~eal~~GvP~l~ 387 (387)
-| ...++ ++ ..+|.+|++|||+.|||+|.
T Consensus 355 hl~~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVT 389 (468)
T PF13844_consen 355 HLRRYQLADI--CLDTFPYNGGTTTLDALWMGVPVVT 389 (468)
T ss_dssp HHHHGGG-SE--EE--SSS--SHHHHHHHHHT--EEB
T ss_pred HHHHhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEe
Confidence 44 33443 33 46788999999999999983
No 110
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=96.32 E-value=0.0066 Score=48.33 Aligned_cols=96 Identities=19% Similarity=0.194 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCCCCchhHHHHHHhhhh
Q 040467 20 IPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFHLFPNFFESTLSFK 99 (387)
Q Consensus 20 ~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (387)
.-+..|+++|++ +||+|+++++......-+. .. .++.+..++..... . .. .... ..
T Consensus 5 ~~~~~l~~~L~~-~G~~V~v~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~----~--------~~-~~~~-------~~ 60 (160)
T PF13579_consen 5 RYVRELARALAA-RGHEVTVVTPQPDPEDDEE-EE--DGVRVHRLPLPRRP----W--------PL-RLLR-------FL 60 (160)
T ss_dssp HHHHHHHHHHHH-TT-EEEEEEE---GGG-SE-EE--TTEEEEEE--S-SS----S--------GG-GHCC-------HH
T ss_pred HHHHHHHHHHHH-CCCEEEEEecCCCCccccc-cc--CCceEEeccCCccc----h--------hh-hhHH-------HH
Confidence 346789999999 9999999996544432211 11 67888877753111 0 00 0001 11
Q ss_pred HHHHHHH--HhhhhccCCCCCeEEEeCCCch-hhHHHHH-HhCCceEEEcc
Q 040467 100 PHFRKLI--NGLIDEQNGHKPVCIIADMFFA-WSAEIAQ-EYGIFNALFVG 146 (387)
Q Consensus 100 ~~~~~ll--~~~~~~~~~~~pD~vV~D~~~~-~~~~~a~-~lgiP~v~~~~ 146 (387)
..+..++ ++. +||+|.+..... ....+++ ..++|++....
T Consensus 61 ~~~~~~l~~~~~-------~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 61 RRLRRLLAARRE-------RPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp HHHHHHCHHCT----------SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred HHHHHHHhhhcc-------CCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 2233343 333 899999777432 2334445 78999988643
No 111
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=96.12 E-value=1.1 Score=41.37 Aligned_cols=36 Identities=6% Similarity=-0.005 Sum_probs=27.7
Q ss_pred EEEEcC--CCcccHHHHHHHHHHHHhCCCcEEEEEeCCc
Q 040467 8 IVMFPL--MAQGHTIPFLALALHLENTNRYTITFVNTPS 44 (387)
Q Consensus 8 il~~~~--~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~ 44 (387)
|+++.. ..-|=.+-...+++.|.+ .||+|+++++..
T Consensus 2 i~~~~~~~~~GGv~~~~~~l~~~l~~-~g~~v~~~~~~~ 39 (372)
T cd03792 2 VLHVNSTPYGGGVAEILHSLVPLMRD-LGVDTRWEVIKG 39 (372)
T ss_pred eEEEeCCCCCCcHHHHHHHHHHHHHH-cCCCceEEecCC
Confidence 555543 355777778899999999 999999998643
No 112
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.061 Score=50.92 Aligned_cols=99 Identities=16% Similarity=0.162 Sum_probs=70.3
Q ss_pred CCeeEEEecCCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhH---HHHhccCCCcEEecccc
Q 040467 276 CNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPPLGFDMNSEFRANEWLPEGF---EERIKDSGQGLVVQKWA 352 (387)
Q Consensus 276 ~~~~v~vs~GS~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~ 352 (387)
++.+||+||+..+...++.+..-++-++..+--++|..+++.. +.+...+ .++-+=....+++.+-.
T Consensus 428 ~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~----------~~~~~~l~~la~~~Gv~~eRL~f~p~~ 497 (620)
T COG3914 428 EDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDD----------AEINARLRDLAEREGVDSERLRFLPPA 497 (620)
T ss_pred CCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCc----------HHHHHHHHHHHHHcCCChhheeecCCC
Confidence 4669999999999999999999888888889999998887531 1122222 22221114566777777
Q ss_pred CHH---HhhCccCcceee---eccChhHHHHHHHcCCccc
Q 040467 353 PQV---EILSHKSISAFL---SHCGWNSVLEALSHRVPII 386 (387)
Q Consensus 353 pq~---~lL~~~~~~~~v---~HGG~~s~~eal~~GvP~l 386 (387)
|.. +=+.-+++ |. -=||..|..|||+.|||+|
T Consensus 498 ~~~~h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVl 535 (620)
T COG3914 498 PNEDHRARYGIADL--VLDTYPYGGHTTASDALWMGVPVL 535 (620)
T ss_pred CCHHHHHhhchhhe--eeecccCCCccchHHHHHhcCcee
Confidence 744 44444443 54 3599999999999999997
No 113
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=95.81 E-value=0.053 Score=41.06 Aligned_cols=84 Identities=19% Similarity=0.172 Sum_probs=50.0
Q ss_pred EEEecCCCcCCCHHHHH--HHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCc-hhHHHHhccCCCcEEeccccC-HH
Q 040467 280 IYVSFGSQNTIAASQMM--QLAMALEACGKNFIWVVKPPLGFDMNSEFRANEWLP-EGFEERIKDSGQGLVVQKWAP-QV 355 (387)
Q Consensus 280 v~vs~GS~~~~~~~~~~--~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~p-q~ 355 (387)
|+|+-||.+..-...+. +..+-.+.-..++|+.+|... ..| + +-.++-.++-+ -+
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d------------~kpva---------gl~v~~F~~~~kiQ 60 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGD------------IKPVA---------GLRVYGFDKEEKIQ 60 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCC------------ccccc---------ccEEEeechHHHHH
Confidence 78999998431112211 133333334568899888652 122 1 11122223333 34
Q ss_pred HhhCccCcceeeeccChhHHHHHHHcCCccc
Q 040467 356 EILSHKSISAFLSHCGWNSVLEALSHRVPII 386 (387)
Q Consensus 356 ~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l 386 (387)
.+...++ .+|.|+|.||+..++.-++|.|
T Consensus 61 sli~dar--IVISHaG~GSIL~~~rl~kplI 89 (161)
T COG5017 61 SLIHDAR--IVISHAGEGSILLLLRLDKPLI 89 (161)
T ss_pred HHhhcce--EEEeccCcchHHHHhhcCCcEE
Confidence 4555545 5999999999999999999987
No 114
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.55 E-value=0.7 Score=41.82 Aligned_cols=45 Identities=13% Similarity=0.159 Sum_probs=40.5
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC-CCcEEEEEeCCcchhhhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENT-NRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~-rGh~Vt~~~~~~~~~~~~~ 51 (387)
|||++-....|++.=..++.++|+++ .+.+|++++.+.+.+.++.
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~ 46 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRL 46 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhc
Confidence 58999999999999999999999995 5999999999888777765
No 115
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=95.36 E-value=2.6 Score=40.82 Aligned_cols=43 Identities=19% Similarity=0.282 Sum_probs=34.0
Q ss_pred CCcEEeccccCHHHhhCccCcceeee---ccC-hhHHHHHHHcCCcccC
Q 040467 343 GQGLVVQKWAPQVEILSHKSISAFLS---HCG-WNSVLEALSHRVPIIG 387 (387)
Q Consensus 343 ~~~v~~~~~~pq~~lL~~~~~~~~v~---HGG-~~s~~eal~~GvP~l~ 387 (387)
.++|.+.++.+...++..+++ ||. .-| ..++.||+++|+|+|+
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~ 421 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIG 421 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEE
Confidence 356888899988899998776 664 233 4589999999999985
No 116
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=95.22 E-value=2.5 Score=38.90 Aligned_cols=51 Identities=12% Similarity=0.149 Sum_probs=43.6
Q ss_pred CCCCccEEEEEcCCCcccHHHHHHHHHHHHhC-CCcEEEEEeCCcchhhhhh
Q 040467 1 MAQRKENIVMFPLMAQGHTIPFLALALHLENT-NRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 1 ~~~~~~~il~~~~~~~GH~~P~l~la~~L~~~-rGh~Vt~~~~~~~~~~~~~ 51 (387)
|....+|||++-....|++.=..++.++|+++ .+.+|++++.+.+.+.++.
T Consensus 1 ~~~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~ 52 (352)
T PRK10422 1 MDKPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSE 52 (352)
T ss_pred CCCCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhcc
Confidence 33345689999999999999999999999996 6999999999888876655
No 117
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=95.12 E-value=2.4 Score=38.83 Aligned_cols=45 Identities=13% Similarity=0.176 Sum_probs=40.6
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC-CCcEEEEEeCCcchhhhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENT-NRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~-rGh~Vt~~~~~~~~~~~~~ 51 (387)
|||++-..+.|++.=..++.++|+++ .+.+|++++.+.+.+.++.
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~ 46 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSE 46 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhc
Confidence 58999999999999999999999996 6999999999888877765
No 118
>PRK10125 putative glycosyl transferase; Provisional
Probab=95.08 E-value=3 Score=39.17 Aligned_cols=36 Identities=25% Similarity=0.191 Sum_probs=27.5
Q ss_pred EEEEEc--CCCcccHHHHHHHHHHHHhCCCcEEEEEeCC
Q 040467 7 NIVMFP--LMAQGHTIPFLALALHLENTNRYTITFVNTP 43 (387)
Q Consensus 7 ~il~~~--~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~ 43 (387)
|||.+- .+..|-=.-++.|++.|.+ +||+|.++...
T Consensus 2 kil~i~~~l~~GGaeri~~~L~~~l~~-~G~~~~i~~~~ 39 (405)
T PRK10125 2 NILQFNVRLAEGGAAGVALDLHQRALQ-QGLASHFVYGY 39 (405)
T ss_pred eEEEEEeeecCCchhHHHHHHHHHHHh-cCCeEEEEEec
Confidence 455544 3455666778999999999 99999999764
No 119
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=94.64 E-value=0.84 Score=46.18 Aligned_cols=126 Identities=15% Similarity=0.145 Sum_probs=68.8
Q ss_pred cEEEEEcCCC-------------cccHHHHHHHHHH--------HHhCCCc----EEEEEeCCc--ch-----hhhhhc-
Q 040467 6 ENIVMFPLMA-------------QGHTIPFLALALH--------LENTNRY----TITFVNTPS--NL-----KKLKSS- 52 (387)
Q Consensus 6 ~~il~~~~~~-------------~GH~~P~l~la~~--------L~~~rGh----~Vt~~~~~~--~~-----~~~~~~- 52 (387)
+||++++.=+ -|+..=.+.+|++ |++ +|| +|+++|--. .. ..++..
T Consensus 256 ~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~-~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~~ 334 (784)
T TIGR02470 256 FNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKL-QGLEITPKILIVTRLIPDAEGTTCNQRLEKVY 334 (784)
T ss_pred ceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHh-cCCCccceEEEEecCCCCcccccccccccccc
Confidence 5687766533 5777778888887 468 999 777988321 11 111111
Q ss_pred CCCCCCeeEEeccCCCCCCCCCCCCCCCCCCCCCchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCch--hh
Q 040467 53 LPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFA--WS 130 (387)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~--~~ 130 (387)
+. .++....+|..+........ +.....++..++.+...+.+.+.... .+ +||+|++..... .|
T Consensus 335 ~~--~~~~I~rvp~g~~~~~~~~~--------~i~k~~l~p~l~~f~~~~~~~~~~~~---~~-~pDlIHahy~d~glva 400 (784)
T TIGR02470 335 GT--EHAWILRVPFRTENGIILRN--------WISRFEIWPYLETFAEDAEKEILAEL---QG-KPDLIIGNYSDGNLVA 400 (784)
T ss_pred CC--CceEEEEecCCCCccccccc--------ccCHHHHHHHHHHHHHHHHHHHHHhc---CC-CCCEEEECCCchHHHH
Confidence 11 56666666643100000000 01123444455444444444332211 22 799999877554 56
Q ss_pred HHHHHHhCCceEEEcc
Q 040467 131 AEIAQEYGIFNALFVG 146 (387)
Q Consensus 131 ~~~a~~lgiP~v~~~~ 146 (387)
..+++++|||.+.+..
T Consensus 401 ~lla~~lgVP~v~t~H 416 (784)
T TIGR02470 401 SLLARKLGVTQCTIAH 416 (784)
T ss_pred HHHHHhcCCCEEEECC
Confidence 7889999999887643
No 120
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=94.49 E-value=2.8 Score=38.60 Aligned_cols=45 Identities=24% Similarity=0.361 Sum_probs=31.7
Q ss_pred CCcEEeccccCHH-HhhCccCcceeeec--cChhHHHHHHHcCCcccC
Q 040467 343 GQGLVVQKWAPQV-EILSHKSISAFLSH--CGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 343 ~~~v~~~~~~pq~-~lL~~~~~~~~v~H--GG~~s~~eal~~GvP~l~ 387 (387)
+.++.+.++.++. .++..+++-.+.++ |...++.||+++|+|+|+
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~ 307 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVIS 307 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEE
Confidence 4567777766543 47888776444444 345699999999999984
No 121
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=94.46 E-value=0.1 Score=43.38 Aligned_cols=44 Identities=16% Similarity=-0.011 Sum_probs=32.2
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
||||+.-=-+. +-.-+..|+++|++ .||+|+++.|...+...-.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~-~g~~V~VvAP~~~~Sg~g~ 44 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSA-LGHDVVVVAPDSEQSGTGH 44 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTT-TSSEEEEEEESSSTTTSTT
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHh-cCCeEEEEeCCCCCcCcce
Confidence 35777665554 55568899999988 8999999999887765543
No 122
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=94.14 E-value=3.8 Score=36.17 Aligned_cols=45 Identities=20% Similarity=0.142 Sum_probs=39.9
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC-CCcEEEEEeCCcchhhhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENT-NRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~-rGh~Vt~~~~~~~~~~~~~ 51 (387)
|||++-....|++.-+.++.++|+++ .+-+|++++.+.+.+.++.
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~ 46 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLEL 46 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhc
Confidence 58999999999999999999999994 4589999999888777766
No 123
>PLN00142 sucrose synthase
Probab=93.94 E-value=0.6 Score=47.32 Aligned_cols=55 Identities=16% Similarity=0.150 Sum_probs=34.5
Q ss_pred hHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCch--hhHHHHHHhCCceEEEcch
Q 040467 89 PNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFA--WSAEIAQEYGIFNALFVGG 147 (387)
Q Consensus 89 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~--~~~~~a~~lgiP~v~~~~~ 147 (387)
..++..++.+...+...+.+. ..+ +||+|.+..... .|..+++++|||.+.+..+
T Consensus 384 e~l~p~L~~f~~~~~~~~~~~---~~~-~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~Hs 440 (815)
T PLN00142 384 FDVWPYLETFAEDAASEILAE---LQG-KPDLIIGNYSDGNLVASLLAHKLGVTQCTIAHA 440 (815)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---cCC-CCCEEEECCccHHHHHHHHHHHhCCCEEEEccc
Confidence 344444444444444333221 123 799999886655 5668899999999987543
No 124
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=93.41 E-value=0.71 Score=43.44 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=32.9
Q ss_pred CCcEEeccccCHHH---hhCccCcceeeeccC----hhHHHHHHHcCCcccC
Q 040467 343 GQGLVVQKWAPQVE---ILSHKSISAFLSHCG----WNSVLEALSHRVPIIG 387 (387)
Q Consensus 343 ~~~v~~~~~~pq~~---lL~~~~~~~~v~HGG----~~s~~eal~~GvP~l~ 387 (387)
..+|.+.+|+++.+ ++..+++.+||...- -+++.||+++|+|+|+
T Consensus 288 ~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIa 339 (407)
T cd04946 288 NISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIA 339 (407)
T ss_pred CceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEe
Confidence 35688899999775 444444556775543 5689999999999984
No 125
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=93.04 E-value=0.81 Score=42.61 Aligned_cols=43 Identities=12% Similarity=0.236 Sum_probs=31.8
Q ss_pred CCcEEeccccCHHH---hhCccCcceeeec----cCh-hHHHHHHHcCCcccC
Q 040467 343 GQGLVVQKWAPQVE---ILSHKSISAFLSH----CGW-NSVLEALSHRVPIIG 387 (387)
Q Consensus 343 ~~~v~~~~~~pq~~---lL~~~~~~~~v~H----GG~-~s~~eal~~GvP~l~ 387 (387)
+.++.+.+++|+.+ ++..+++ +|.- .|. .++.||+++|+|+|+
T Consensus 256 ~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~ 306 (380)
T PRK15484 256 GDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLA 306 (380)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEE
Confidence 46788889998765 4777666 6542 333 578899999999985
No 126
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=92.80 E-value=0.28 Score=37.83 Aligned_cols=45 Identities=22% Similarity=0.277 Sum_probs=27.6
Q ss_pred CCcEEeccccCH-HHhhCccCcceeeec---cChhHHHHHHHcCCcccC
Q 040467 343 GQGLVVQKWAPQ-VEILSHKSISAFLSH---CGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 343 ~~~v~~~~~~pq-~~lL~~~~~~~~v~H---GG~~s~~eal~~GvP~l~ 387 (387)
.+|+.+.+|++. .+++..+++....+. |--+++.|++++|+|+|+
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~ 100 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIA 100 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEE
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEE
Confidence 458899999863 337778787555442 234899999999999984
No 127
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.58 E-value=0.98 Score=35.81 Aligned_cols=55 Identities=18% Similarity=0.169 Sum_probs=45.4
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEecc
Q 040467 5 KENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIP 65 (387)
Q Consensus 5 ~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~ 65 (387)
.++|.+.-.|+.|-..-.+.++..|.+ +|+.|-=+-+++.++.-.. .|++.+++.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~-~g~kvgGf~t~EVR~gGkR-----~GF~Ivdl~ 59 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLRE-KGYKVGGFITPEVREGGKR-----IGFKIVDLA 59 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHh-cCceeeeEEeeeeecCCeE-----eeeEEEEcc
Confidence 467999999999999999999999999 9999986666666655555 667777765
No 128
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=92.54 E-value=2.1 Score=34.61 Aligned_cols=31 Identities=16% Similarity=0.087 Sum_probs=25.6
Q ss_pred CCCCeEEEeCCCchhhHHHHHHh-CCceEEEc
Q 040467 115 GHKPVCIIADMFFAWSAEIAQEY-GIFNALFV 145 (387)
Q Consensus 115 ~~~pD~vV~D~~~~~~~~~a~~l-giP~v~~~ 145 (387)
|..||+||...-.-.++-+-+.+ ++|.+.+.
T Consensus 64 Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 64 GFVPDVIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred CCCCCEEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 33799999998777888888888 89998874
No 129
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=92.28 E-value=0.79 Score=43.12 Aligned_cols=43 Identities=21% Similarity=0.447 Sum_probs=32.4
Q ss_pred CCcEEeccccCHHH---hhCccCcceeeec---------cCh-hHHHHHHHcCCcccC
Q 040467 343 GQGLVVQKWAPQVE---ILSHKSISAFLSH---------CGW-NSVLEALSHRVPIIG 387 (387)
Q Consensus 343 ~~~v~~~~~~pq~~---lL~~~~~~~~v~H---------GG~-~s~~eal~~GvP~l~ 387 (387)
.+++.+.+|+|+.+ ++..+++ ||.- -|. +++.||+++|+|+|+
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~ 333 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVS 333 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEE
Confidence 46799999999876 5666665 6642 243 678999999999985
No 130
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.13 E-value=0.2 Score=47.94 Aligned_cols=100 Identities=18% Similarity=0.357 Sum_probs=67.0
Q ss_pred CeeEEEecCCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEeccccC---
Q 040467 277 NSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAP--- 353 (387)
Q Consensus 277 ~~~v~vs~GS~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--- 353 (387)
..+||.+|--....+++.++.-.+-|++.+..++|....+...+. .+.+ ..++.+=-|+.+.+.+-+.
T Consensus 758 d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~--rf~t-------y~~~~Gl~p~riifs~va~k~e 828 (966)
T KOG4626|consen 758 DAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQ--RFRT-------YAEQLGLEPDRIIFSPVAAKEE 828 (966)
T ss_pred CeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccchH--HHHH-------HHHHhCCCccceeeccccchHH
Confidence 459999999999999999999999999999999999988742111 0110 1111111155666655554
Q ss_pred --HHHhhCccCcceeeeccChhHHHHHHHcCCccc
Q 040467 354 --QVEILSHKSISAFLSHCGWNSVLEALSHRVPII 386 (387)
Q Consensus 354 --q~~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l 386 (387)
++-.|..-.++-+.+. |..|.++.|+.|||||
T Consensus 829 Hvrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmV 862 (966)
T KOG4626|consen 829 HVRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMV 862 (966)
T ss_pred HHHhhhhhhhcccCcCcC-CcccchhhhccCCcee
Confidence 2233433333445555 5778999999999997
No 131
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=92.09 E-value=8.1 Score=35.39 Aligned_cols=137 Identities=15% Similarity=0.071 Sum_probs=67.9
Q ss_pred hhhcHHHHHHHHhhcCCCeEEeccccCCCCCCCCCCCCCCCChhhhccccCCCCCCeeEEEecCCCcCCCHHHHHHHHHH
Q 040467 222 EELDKIGLMYFSRKLGRPVWPVGSLLLSTGSRAGAGKEYGISTELCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMA 301 (387)
Q Consensus 222 ~~le~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~a 301 (387)
.-+|.++++. .+-...|||..+.+.... ....+.+.+-+....+++++.+--||-...=...+..+.+|
T Consensus 144 lPFE~~~y~k----~g~~~~yVGHpl~d~i~~-------~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a 212 (381)
T COG0763 144 LPFEPAFYDK----FGLPCTYVGHPLADEIPL-------LPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQA 212 (381)
T ss_pred cCCCHHHHHh----cCCCeEEeCChhhhhccc-------cccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHH
Confidence 3455554332 334489999877654211 11233343334333346699999998753222233334444
Q ss_pred HHh-----CCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhc-cC--CCcEEeccccCHHHhhCccCcceeeeccChh
Q 040467 302 LEA-----CGKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIK-DS--GQGLVVQKWAPQVEILSHKSISAFLSHCGWN 373 (387)
Q Consensus 302 ~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~v~~~~~~pq~~lL~~~~~~~~v~HGG~~ 373 (387)
.++ .+.++++-+.... -....++.. .. ..+..+.+.--.. ++..+++ .+.-+|-
T Consensus 213 ~~~l~~~~~~~~~vlp~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-a~~~aD~--al~aSGT- 274 (381)
T COG0763 213 AQELKARYPDLKFVLPLVNAK--------------YRRIIEEALKWEVAGLSLILIDGEKRK-AFAAADA--ALAASGT- 274 (381)
T ss_pred HHHHHhhCCCceEEEecCcHH--------------HHHHHHHHhhccccCceEEecCchHHH-HHHHhhH--HHHhccH-
Confidence 433 4678887664331 011111111 00 0222332222222 4445454 4444443
Q ss_pred HHHHHHHcCCcccC
Q 040467 374 SVLEALSHRVPIIG 387 (387)
Q Consensus 374 s~~eal~~GvP~l~ 387 (387)
-+.|+.-+|+|||.
T Consensus 275 ~tLE~aL~g~P~Vv 288 (381)
T COG0763 275 ATLEAALAGTPMVV 288 (381)
T ss_pred HHHHHHHhCCCEEE
Confidence 47899999999984
No 132
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=92.04 E-value=0.9 Score=36.44 Aligned_cols=29 Identities=24% Similarity=0.188 Sum_probs=23.8
Q ss_pred CcccHHHHHHHHHHHHhCCCcEEEEEeCCc
Q 040467 15 AQGHTIPFLALALHLENTNRYTITFVNTPS 44 (387)
Q Consensus 15 ~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~ 44 (387)
..|=-.-+..|+++|++ +||+|+++++..
T Consensus 11 ~GG~e~~~~~l~~~l~~-~G~~v~v~~~~~ 39 (177)
T PF13439_consen 11 IGGAERVVLNLARALAK-RGHEVTVVSPGV 39 (177)
T ss_dssp SSHHHHHHHHHHHHHHH-TT-EEEEEESS-
T ss_pred CChHHHHHHHHHHHHHH-CCCEEEEEEcCC
Confidence 55777889999999999 999999997653
No 133
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=92.03 E-value=0.54 Score=37.96 Aligned_cols=43 Identities=26% Similarity=0.400 Sum_probs=31.0
Q ss_pred CCcEEeccccCH---HHhhCccCcceeeec----cChhHHHHHHHcCCcccC
Q 040467 343 GQGLVVQKWAPQ---VEILSHKSISAFLSH----CGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 343 ~~~v~~~~~~pq---~~lL~~~~~~~~v~H----GG~~s~~eal~~GvP~l~ 387 (387)
..++.+..+.++ ..++..+++ +|+. |..+++.||+++|+|+|+
T Consensus 72 ~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~ 121 (172)
T PF00534_consen 72 KENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIA 121 (172)
T ss_dssp GTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEE
T ss_pred ccccccccccccccccccccccee--ccccccccccccccccccccccceee
Confidence 467888899983 346777665 7766 667799999999999984
No 134
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=91.69 E-value=0.5 Score=36.78 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=37.6
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCc
Q 040467 3 QRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPS 44 (387)
Q Consensus 3 ~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~ 44 (387)
|++.+|++.+.+.-+|-.-..-++..|++ +|++|+++....
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~-~G~eVi~LG~~v 41 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTE-AGFEVINLGVMT 41 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHH-CCCEEEECCCCC
Confidence 57889999999999999999999999999 999999998543
No 135
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=91.34 E-value=3.8 Score=35.58 Aligned_cols=46 Identities=13% Similarity=0.097 Sum_probs=31.8
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 3 QRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 3 ~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
.+|||||+.-=-+. |..-+..|+++|++ .| +|+++.|...+...-.
T Consensus 3 ~~~M~ILltNDDGi-~a~Gi~aL~~~l~~-~g-~V~VvAP~~~~Sg~g~ 48 (257)
T PRK13932 3 DKKPHILVCNDDGI-EGEGIHVLAASMKK-IG-RVTVVAPAEPHSGMSH 48 (257)
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHHHh-CC-CEEEEcCCCCCCCCcc
Confidence 35678887654332 22457889999999 88 7999988776654444
No 136
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=90.94 E-value=0.44 Score=39.37 Aligned_cols=49 Identities=8% Similarity=-0.098 Sum_probs=38.9
Q ss_pred CCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhh
Q 040467 1 MAQRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLK 50 (387)
Q Consensus 1 ~~~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~ 50 (387)
||++..||++--.|+.|=+.-...++++|.+ +||+|.++.++.-.+.+.
T Consensus 1 ~~l~~k~IllgVTGsiaa~k~a~~lir~L~k-~G~~V~vv~T~aA~~~~~ 49 (196)
T PRK08305 1 MSLKGKRIGFGLTGSHCTYDEVMPEIEKLVD-EGAEVTPIVSYTVQTTDT 49 (196)
T ss_pred CCCCCCEEEEEEcCHHHHHHHHHHHHHHHHh-CcCEEEEEECHhHHHHhh
Confidence 6667778998888876655557999999999 999999998877655443
No 137
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=88.91 E-value=3.2 Score=34.25 Aligned_cols=100 Identities=17% Similarity=0.189 Sum_probs=53.2
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC-CCcEEEEEeCCc-chhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCC
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENT-NRYTITFVNTPS-NLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLP 84 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~-rGh~Vt~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (387)
.++-+-..|.|-++-..+|+++|.++ .|++|.+-++.. -.+...+... ..+....+|.|
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~--~~v~~~~~P~D----------------- 82 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP--DRVDVQYLPLD----------------- 82 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G--GG-SEEE---S-----------------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC--CCeEEEEeCcc-----------------
Confidence 45556667889999999999999993 389988887533 3444444322 23444445643
Q ss_pred CCchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCch--hhHHHHHHhCCceEEEc
Q 040467 85 FHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFA--WSAEIAQEYGIFNALFV 145 (387)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~--~~~~~a~~lgiP~v~~~ 145 (387)
....++.+++.+ +||++|.--.-. ..+..+++.|||.+.+.
T Consensus 83 -------------~~~~~~rfl~~~-------~P~~~i~~EtElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 83 -------------FPWAVRRFLDHW-------RPDLLIWVETELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp -------------SHHHHHHHHHHH---------SEEEEES----HHHHHH-----S-EEEEE
T ss_pred -------------CHHHHHHHHHHh-------CCCEEEEEccccCHHHHHHHhhcCCCEEEEe
Confidence 233577889999 898766443344 34466777899998874
No 138
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=88.81 E-value=25 Score=34.44 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=31.8
Q ss_pred CCcEEeccccCH-HHhhCccCcceeee---ccC-hhHHHHHHHcCCcccC
Q 040467 343 GQGLVVQKWAPQ-VEILSHKSISAFLS---HCG-WNSVLEALSHRVPIIG 387 (387)
Q Consensus 343 ~~~v~~~~~~pq-~~lL~~~~~~~~v~---HGG-~~s~~eal~~GvP~l~ 387 (387)
.++|.+.+|..+ ..+|..+++ ||. .-| -+++.||+++|+|+|+
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVA 501 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVIS 501 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEE
Confidence 467888888543 346777665 775 344 5699999999999985
No 139
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=87.53 E-value=5.6 Score=34.67 Aligned_cols=90 Identities=16% Similarity=0.125 Sum_probs=53.5
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchh-hhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCCC
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLK-KLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPF 85 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (387)
+|+++.. .|. -..|+++|.+ +||+|+..+...+.. .+.+.+ ....+. . .+
T Consensus 2 ~ILvlGG--T~e---gr~la~~L~~-~g~~v~~s~~t~~~~~~~~~~g----~~~v~~-g------~l------------ 52 (256)
T TIGR00715 2 TVLLMGG--TVD---SRAIAKGLIA-QGIEILVTVTTSEGKHLYPIHQ----ALTVHT-G------AL------------ 52 (256)
T ss_pred eEEEEec--hHH---HHHHHHHHHh-CCCeEEEEEccCCccccccccC----CceEEE-C------CC------------
Confidence 4666543 232 5789999999 999999887655432 233211 111110 0 00
Q ss_pred CchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhh-------HHHHHHhCCceEEEc
Q 040467 86 HLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWS-------AEIAQEYGIFNALFV 145 (387)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~-------~~~a~~lgiP~v~~~ 145 (387)
-...+.+++++. ++|+| .|...+++ ..+++++|||++.+-
T Consensus 53 ------------~~~~l~~~l~~~-------~i~~V-IDAtHPfA~~is~~a~~a~~~~~ipylR~e 99 (256)
T TIGR00715 53 ------------DPQELREFLKRH-------SIDIL-VDATHPFAAQITTNATAVCKELGIPYVRFE 99 (256)
T ss_pred ------------CHHHHHHHHHhc-------CCCEE-EEcCCHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 012355677766 78855 45556655 367888999999984
No 140
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=87.10 E-value=6.4 Score=34.11 Aligned_cols=89 Identities=12% Similarity=-0.006 Sum_probs=55.5
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCCCC
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFH 86 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (387)
+|+++..-+-| ..||+.|.+ +|++|.+-+...+.. ... .+.....=+ +.
T Consensus 4 ~IlvlgGT~eg-----r~la~~L~~-~g~~v~~Svat~~g~-~~~-----~~~~v~~G~-------l~------------ 52 (248)
T PRK08057 4 RILLLGGTSEA-----RALARALAA-AGVDIVLSLAGRTGG-PAD-----LPGPVRVGG-------FG------------ 52 (248)
T ss_pred eEEEEechHHH-----HHHHHHHHh-CCCeEEEEEccCCCC-ccc-----CCceEEECC-------CC------------
Confidence 48887665555 478999999 999888876555443 111 222222111 00
Q ss_pred chhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhhH-------HHHHHhCCceEEEc
Q 040467 87 LFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSA-------EIAQEYGIFNALFV 145 (387)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~-------~~a~~lgiP~v~~~ 145 (387)
-.+.+.+++++. ++++| .|...+++. .+|+++|||++.+.
T Consensus 53 -----------~~~~l~~~l~~~-------~i~~V-IDATHPfA~~is~~a~~ac~~~~ipyiR~e 99 (248)
T PRK08057 53 -----------GAEGLAAYLREE-------GIDLV-IDATHPYAAQISANAAAACRALGIPYLRLE 99 (248)
T ss_pred -----------CHHHHHHHHHHC-------CCCEE-EECCCccHHHHHHHHHHHHHHhCCcEEEEe
Confidence 133466677665 67774 566666554 66888999999984
No 141
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=86.05 E-value=27 Score=31.84 Aligned_cols=105 Identities=20% Similarity=0.086 Sum_probs=66.7
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhC-CCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCC
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENT-NRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLP 84 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~-rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (387)
++|+++-..+.|++.=.+++-..|+++ .+.++++++.+.+.+.+...- .+.-+-. .. . . . .
T Consensus 2 ~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~p----~I~~vi~-~~----~--~---~-~--- 63 (334)
T COG0859 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLNP----EIDKVII-ID----K--K---K-K--- 63 (334)
T ss_pred ceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcCh----Hhhhhcc-cc----c--c---c-c---
Confidence 369999999999999999999999995 569999999887777666621 1111100 00 0 0 0 0
Q ss_pred CCchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHhCCceEE
Q 040467 85 FHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNAL 143 (387)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~lgiP~v~ 143 (387)
. ........+.+.+... ++|+||.=.-..-...++...++|.-.
T Consensus 64 -----~------~~~~~~~~l~~~lr~~----~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 64 -----G------LGLKERLALLRTLRKE----RYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred -----c------cchHHHHHHHHHhhcc----CCCEEEECcccHHHHHHHHHhCCCccc
Confidence 0 1122233344444332 799999777666666777677777543
No 142
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=85.71 E-value=1.2 Score=34.16 Aligned_cols=44 Identities=14% Similarity=0.086 Sum_probs=37.2
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
+||++...|+.+=+. ...+.++|.+ +|++|.++.++...+.+..
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~-~g~~v~vv~S~~A~~~~~~ 44 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKR-AGWEVRVVLSPSAERFVTP 44 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHT-TTSEEEEEESHHHHHHSHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhh-CCCEEEEEECCcHHHHhhh
Confidence 378999999877777 9999999999 9999999999888777776
No 143
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=85.18 E-value=16 Score=31.62 Aligned_cols=42 Identities=14% Similarity=0.050 Sum_probs=26.5
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
|||+.-=-+. |.--+.+|+++|++ +|+|+++.|...+...-.
T Consensus 2 ~ILlTNDDGi-~a~Gi~aL~~~l~~--~~~V~VvAP~~~qSg~g~ 43 (253)
T PRK13935 2 NILVTNDDGI-TSPGIIILAEYLSE--KHEVFVVAPDKERSATGH 43 (253)
T ss_pred eEEEECCCCC-CCHHHHHHHHHHHh--CCcEEEEccCCCCccccc
Confidence 4555543332 33347788888855 479999998776654444
No 144
>PLN02316 synthase/transferase
Probab=84.96 E-value=57 Score=34.66 Aligned_cols=38 Identities=11% Similarity=0.082 Sum_probs=28.3
Q ss_pred ccEEEEEcCCC-----ccc-HHHHHHHHHHHHhCCCcEEEEEeCC
Q 040467 5 KENIVMFPLMA-----QGH-TIPFLALALHLENTNRYTITFVNTP 43 (387)
Q Consensus 5 ~~~il~~~~~~-----~GH-~~P~l~la~~L~~~rGh~Vt~~~~~ 43 (387)
.+||+++++-. .|= -.-.-.|+++|++ +||+|.++++.
T Consensus 587 pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~-~Gh~V~VitP~ 630 (1036)
T PLN02316 587 PMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQD-LNHNVDIILPK 630 (1036)
T ss_pred CcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHH-cCCEEEEEecC
Confidence 47899988521 222 3345789999999 99999999864
No 145
>PRK12342 hypothetical protein; Provisional
Probab=84.70 E-value=9 Score=33.29 Aligned_cols=39 Identities=5% Similarity=-0.154 Sum_probs=29.4
Q ss_pred HHHHHHHhhhhccCCCCCeEEEeCCCch-h-----hHHHHHHhCCceEEEcc
Q 040467 101 HFRKLINGLIDEQNGHKPVCIIADMFFA-W-----SAEIAQEYGIFNALFVG 146 (387)
Q Consensus 101 ~~~~ll~~~~~~~~~~~pD~vV~D~~~~-~-----~~~~a~~lgiP~v~~~~ 146 (387)
.+.+.+++. .||+|++-..+. . +..+|+.+|+|++.+..
T Consensus 100 ~La~~i~~~-------~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~ 144 (254)
T PRK12342 100 ALAAAIEKI-------GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVS 144 (254)
T ss_pred HHHHHHHHh-------CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEE
Confidence 445566666 799999866554 3 67999999999998643
No 146
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=84.41 E-value=22 Score=30.92 Aligned_cols=40 Identities=15% Similarity=0.026 Sum_probs=25.5
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKL 49 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~ 49 (387)
|||+.==-+. |.--+..|+++|++ +|+|+++.|...+...
T Consensus 2 ~ILvtNDDGi-~apGl~aL~~~l~~--~~~V~VvAP~~~~Sg~ 41 (253)
T PRK13933 2 NILLTNDDGI-NAEGINTLAELLSK--YHEVIIVAPENQRSAS 41 (253)
T ss_pred eEEEEcCCCC-CChhHHHHHHHHHh--CCcEEEEccCCCCccc
Confidence 4555533222 22237888888865 4799999987776643
No 147
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=84.37 E-value=7.1 Score=35.82 Aligned_cols=112 Identities=18% Similarity=0.091 Sum_probs=70.0
Q ss_pred EEEcCCCcccHHHHHHHHHHHHhCCC-cEEEEEeCCcch--hhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCCC
Q 040467 9 VMFPLMAQGHTIPFLALALHLENTNR-YTITFVNTPSNL--KKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPF 85 (387)
Q Consensus 9 l~~~~~~~GH~~P~l~la~~L~~~rG-h~Vt~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (387)
+++-.|++=.+.=|-+|.+++.+ .+ .+..++.+-..+ +.... .++...++. +.-......
T Consensus 6 v~~I~GTRPE~iKmapli~~~~~-~~~~~~~vi~TGQH~d~em~~~------~le~~~i~~-------pdy~L~i~~--- 68 (383)
T COG0381 6 VLTIFGTRPEAIKMAPLVKALEK-DPDFELIVIHTGQHRDYEMLDQ------VLELFGIRK-------PDYDLNIMK--- 68 (383)
T ss_pred EEEEEecCHHHHHHhHHHHHHHh-CCCCceEEEEecccccHHHHHH------HHHHhCCCC-------CCcchhccc---
Confidence 44456788889999999999999 76 777777776666 33322 111222220 110000000
Q ss_pred CchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEe--CCCch-hhHHHHHHhCCceEEEc
Q 040467 86 HLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIA--DMFFA-WSAEIAQEYGIFNALFV 145 (387)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~--D~~~~-~~~~~a~~lgiP~v~~~ 145 (387)
.-..+.+.+..+...+.+++++. +||+|++ |..+. +++.+|-..+||+.-+-
T Consensus 69 -~~~tl~~~t~~~i~~~~~vl~~~-------kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvE 123 (383)
T COG0381 69 -PGQTLGEITGNIIEGLSKVLEEE-------KPDLVLVHGDTNTTLAGALAAFYLKIPVGHVE 123 (383)
T ss_pred -cCCCHHHHHHHHHHHHHHHHHhh-------CCCEEEEeCCcchHHHHHHHHHHhCCceEEEe
Confidence 01234455566677788888888 9998774 77666 44788888999988763
No 148
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=83.93 E-value=10 Score=32.92 Aligned_cols=93 Identities=19% Similarity=0.184 Sum_probs=55.1
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCCC
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPF 85 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (387)
|||+++..-+-| ..||+.|.+ +|+ |.+-+..++.....+... ....... . .+.
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~-~g~-v~~sv~t~~g~~~~~~~~--~~~~v~~-G------~lg----------- 53 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAE-AGY-VIVSVATSYGGELLKPEL--PGLEVRV-G------RLG----------- 53 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHh-cCC-EEEEEEhhhhHhhhcccc--CCceEEE-C------CCC-----------
Confidence 357777655554 479999999 998 666655555544443110 1111111 0 000
Q ss_pred CchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhhH-------HHHHHhCCceEEEc
Q 040467 86 HLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSA-------EIAQEYGIFNALFV 145 (387)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~-------~~a~~lgiP~v~~~ 145 (387)
-.+.+.+++++. ++++|| |...+++. .+|+++|||++.+-
T Consensus 54 ------------~~~~l~~~l~~~-------~i~~vI-DATHPfA~~is~na~~a~~~~~ipylR~e 100 (249)
T PF02571_consen 54 ------------DEEGLAEFLREN-------GIDAVI-DATHPFAAEISQNAIEACRELGIPYLRFE 100 (249)
T ss_pred ------------CHHHHHHHHHhC-------CCcEEE-ECCCchHHHHHHHHHHHHhhcCcceEEEE
Confidence 133456677665 677765 66666554 66888999999973
No 149
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=83.83 E-value=12 Score=36.15 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=32.9
Q ss_pred CCcEEeccccCHHHhhCccCcceeeec----cChhHHHHHHHcCCcccC
Q 040467 343 GQGLVVQKWAPQVEILSHKSISAFLSH----CGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 343 ~~~v~~~~~~pq~~lL~~~~~~~~v~H----GG~~s~~eal~~GvP~l~ 387 (387)
.++|.+.+...-..+++.+++ +|.- |--+++.||+++|+|+|+
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVa 399 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVA 399 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEE
Confidence 468888887677778888665 5533 445689999999999984
No 150
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=83.52 E-value=9.2 Score=33.13 Aligned_cols=42 Identities=19% Similarity=0.068 Sum_probs=28.2
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
|||+.==-+. |..-+..|+++|.+ . |+|+++.|...+.....
T Consensus 2 ~ILlTNDDGi-~a~Gi~aL~~~l~~-~-~~V~VvAP~~~qSg~g~ 43 (250)
T PRK00346 2 RILLTNDDGI-HAPGIRALAEALRE-L-ADVTVVAPDRERSGASH 43 (250)
T ss_pred eEEEECCCCC-CChhHHHHHHHHHh-C-CCEEEEeCCCCCcCCcc
Confidence 4555433222 33447889999999 8 79999998776655444
No 151
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=83.47 E-value=4.7 Score=32.67 Aligned_cols=112 Identities=20% Similarity=0.158 Sum_probs=57.1
Q ss_pred EcCCCcccHHHHHHHHHHH-HhCCCcEEEEEeCCcc--hhhhh---hcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCC
Q 040467 11 FPLMAQGHTIPFLALALHL-ENTNRYTITFVNTPSN--LKKLK---SSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLP 84 (387)
Q Consensus 11 ~~~~~~GH~~P~l~la~~L-~~~rGh~Vt~~~~~~~--~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (387)
+-.++-||+.=|+.|.+.+ .+...++.-+++..+. +.++. +... ....+..+|.. . ...
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~--~~~~~~~~~r~---------r----~v~ 67 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSS--KRHKILEIPRA---------R----EVG 67 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhcc--ccceeeccceE---------E----Eec
Confidence 3445669999999999999 3303455555554333 22222 2111 11123333311 0 001
Q ss_pred CCchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchh--hHHHHHHh------CCceEEEc
Q 040467 85 FHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAW--SAEIAQEY------GIFNALFV 145 (387)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~--~~~~a~~l------giP~v~~~ 145 (387)
.......+..+......+.-+ .+. +||+||+.--..+ ...+|..+ |.+.|.+-
T Consensus 68 q~~~~~~~~~l~~~~~~~~il-~r~-------rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIE 128 (170)
T PF08660_consen 68 QSYLTSIFTTLRAFLQSLRIL-RRE-------RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIE 128 (170)
T ss_pred hhhHhhHHHHHHHHHHHHHHH-HHh-------CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEE
Confidence 111123333333333333333 333 8999998876663 34667777 88888873
No 152
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=83.23 E-value=2.5 Score=31.87 Aligned_cols=35 Identities=17% Similarity=0.258 Sum_probs=32.5
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeC
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNT 42 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~ 42 (387)
||++.+.+.-.|.....-++..|++ +|++|.++..
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~-~G~~V~~lg~ 35 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRD-AGFEVIDLGV 35 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHH-CCCEEEECCC
Confidence 4899999999999999999999999 9999988864
No 153
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=83.03 E-value=12 Score=33.91 Aligned_cols=41 Identities=24% Similarity=0.224 Sum_probs=33.7
Q ss_pred cEEEEEcC-CCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchh
Q 040467 6 ENIVMFPL-MAQGHTIPFLALALHLENTNRYTITFVNTPSNLK 47 (387)
Q Consensus 6 ~~il~~~~-~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~ 47 (387)
+||+|++. |+.|-..-.-++|..|++ .|..|.+++++..++
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~-~g~kvLlvStDPAhs 43 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAE-SGKKVLLVSTDPAHS 43 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHH-cCCcEEEEEeCCCCc
Confidence 46788777 788999999999999999 998888887665544
No 154
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=82.99 E-value=4.7 Score=38.14 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=30.0
Q ss_pred CCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcch
Q 040467 2 AQRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNL 46 (387)
Q Consensus 2 ~~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~ 46 (387)
|.+.||||++-.+++-| +||++|++ -++...+++.+.+.
T Consensus 1 ~~~~~kvLviG~g~reh-----al~~~~~~-~~~~~~~~~~pgn~ 39 (426)
T PRK13789 1 MQVKLKVLLIGSGGRES-----AIAFALRK-SNLLSELKVFPGNG 39 (426)
T ss_pred CCCCcEEEEECCCHHHH-----HHHHHHHh-CCCCCEEEEECCch
Confidence 34567899999999888 68999999 88666666655543
No 155
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=82.38 E-value=2.4 Score=31.98 Aligned_cols=39 Identities=10% Similarity=0.009 Sum_probs=26.7
Q ss_pred cEEEEEcCCCcc---cHHHHHHHHHHHHhCCCcEEEEEeCCcc
Q 040467 6 ENIVMFPLMAQG---HTIPFLALALHLENTNRYTITFVNTPSN 45 (387)
Q Consensus 6 ~~il~~~~~~~G---H~~P~l~la~~L~~~rGh~Vt~~~~~~~ 45 (387)
|||+|+--|..+ .-...++++.+-.+ |||+|.++.+.+.
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~-RGhev~~~~~~dL 42 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQR-RGHEVFYYEPGDL 42 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHH-TT-EEEEE-GGGE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHH-CCCEEEEEEcCcE
Confidence 468888877654 33567889999999 9999999986554
No 156
>PRK05973 replicative DNA helicase; Provisional
Probab=82.34 E-value=7.3 Score=33.48 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=37.1
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
-+++..-|+.|-..-.+.++.+.++ +|..|.|++.+...+.+.+
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~-~Ge~vlyfSlEes~~~i~~ 109 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMK-SGRTGVFFTLEYTEQDVRD 109 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEEEeCCHHHHHH
Confidence 4677778899999999999999999 9999999998876554444
No 157
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=82.04 E-value=14 Score=32.25 Aligned_cols=39 Identities=8% Similarity=-0.199 Sum_probs=28.9
Q ss_pred HHHHHHHhhhhccCCCCCeEEEeCCCch------hhHHHHHHhCCceEEEcc
Q 040467 101 HFRKLINGLIDEQNGHKPVCIIADMFFA------WSAEIAQEYGIFNALFVG 146 (387)
Q Consensus 101 ~~~~ll~~~~~~~~~~~pD~vV~D~~~~------~~~~~a~~lgiP~v~~~~ 146 (387)
.+.+.+++. .||+|++-..+. -+..+|+.+|+|++.+..
T Consensus 103 ~La~ai~~~-------~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~ 147 (256)
T PRK03359 103 ALAAAAQKA-------GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVS 147 (256)
T ss_pred HHHHHHHHh-------CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEE
Confidence 345566666 799999855443 456899999999998654
No 158
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=81.69 E-value=30 Score=30.29 Aligned_cols=42 Identities=10% Similarity=-0.041 Sum_probs=28.3
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
|||+.-=-+. |..-+..|+++|.. .| +|+++.|...++..-.
T Consensus 2 ~ILlTNDDGi-~apGi~aL~~al~~-~g-~V~VvAP~~eqSg~g~ 43 (266)
T PRK13934 2 KILVTNDDGV-HSPGLRLLYEFVSP-LG-EVDVVAPETPKSATGL 43 (266)
T ss_pred eEEEEcCCCC-CCHHHHHHHHHHHh-CC-cEEEEccCCCCccccc
Confidence 4555443332 34558899999999 88 7999988776654443
No 159
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=81.45 E-value=17 Score=33.27 Aligned_cols=45 Identities=13% Similarity=0.028 Sum_probs=41.0
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC-CCcEEEEEeCCcchhhhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENT-NRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~-rGh~Vt~~~~~~~~~~~~~ 51 (387)
|||++-..+.|++.=.+++.++|+++ .+.+|++++.+.+.+.++.
T Consensus 2 rILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~ 47 (348)
T PRK10916 2 KILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSR 47 (348)
T ss_pred cEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhc
Confidence 69999999999999999999999996 6999999998887777765
No 160
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=81.45 E-value=5.5 Score=34.29 Aligned_cols=28 Identities=21% Similarity=0.141 Sum_probs=20.7
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 22 FLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 22 ~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
+..|+++|+ .+++|+++.|..+++....
T Consensus 16 i~aL~~al~--~~~dV~VVAP~~~qSg~s~ 43 (252)
T COG0496 16 IRALARALR--EGADVTVVAPDREQSGASH 43 (252)
T ss_pred HHHHHHHHh--hCCCEEEEccCCCCccccc
Confidence 555666665 7999999999887765544
No 161
>PRK06849 hypothetical protein; Provisional
Probab=78.81 E-value=13 Score=34.64 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=29.3
Q ss_pred CCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCc
Q 040467 2 AQRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPS 44 (387)
Q Consensus 2 ~~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~ 44 (387)
|+.+++||++.... ...+.+|+.|.+ +||+|.++....
T Consensus 1 ~~~~~~VLI~G~~~----~~~l~iar~l~~-~G~~Vi~~d~~~ 38 (389)
T PRK06849 1 MNTKKTVLITGARA----PAALELARLFHN-AGHTVILADSLK 38 (389)
T ss_pred CCCCCEEEEeCCCc----HHHHHHHHHHHH-CCCEEEEEeCCc
Confidence 34567788885433 368999999999 999999997654
No 162
>PRK09620 hypothetical protein; Provisional
Probab=78.70 E-value=9.9 Score=32.53 Aligned_cols=38 Identities=5% Similarity=-0.082 Sum_probs=26.5
Q ss_pred ccEEEEEcCCCcccHHH------------HHHHHHHHHhCCCcEEEEEeCC
Q 040467 5 KENIVMFPLMAQGHTIP------------FLALALHLENTNRYTITFVNTP 43 (387)
Q Consensus 5 ~~~il~~~~~~~GH~~P------------~l~la~~L~~~rGh~Vt~~~~~ 43 (387)
..+|++...|+.=.+.| =..||++|.+ +|++|+++...
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~-~Ga~V~li~g~ 52 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELIS-KGAHVIYLHGY 52 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHH-CCCeEEEEeCC
Confidence 34677776654433333 2678999999 99999999754
No 163
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=78.25 E-value=50 Score=29.45 Aligned_cols=40 Identities=13% Similarity=0.115 Sum_probs=34.8
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCc
Q 040467 4 RKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPS 44 (387)
Q Consensus 4 ~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~ 44 (387)
+...|-+.-.|+.|--.-.=.|.++|.+ +||+|.++.-.+
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~-~G~rVaVlAVDP 89 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRE-RGHRVAVLAVDP 89 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHH-CCcEEEEEEECC
Confidence 3457888889999999999999999999 999999998444
No 164
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=78.17 E-value=20 Score=26.38 Aligned_cols=84 Identities=17% Similarity=0.083 Sum_probs=56.6
Q ss_pred ccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCCCCchhHHHHHHh
Q 040467 17 GHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFHLFPNFFESTL 96 (387)
Q Consensus 17 GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (387)
++-.=++++++.|.+ .|+++ ++++...+.+.+ .++.+..+... ..
T Consensus 10 ~~k~~~~~~~~~l~~-~G~~l--~aT~gT~~~l~~-----~gi~~~~v~~~------~~--------------------- 54 (110)
T cd01424 10 RDKPEAVEIAKRLAE-LGFKL--VATEGTAKYLQE-----AGIPVEVVNKV------SE--------------------- 54 (110)
T ss_pred CcHhHHHHHHHHHHH-CCCEE--EEchHHHHHHHH-----cCCeEEEEeec------CC---------------------
Confidence 355678899999999 99988 456778888888 66666655321 00
Q ss_pred hhhHHHHHHHHhhhhccCCCCCeEEEeCCC-------chhhHHHHHHhCCceEE
Q 040467 97 SFKPHFRKLINGLIDEQNGHKPVCIIADMF-------FAWSAEIAQEYGIFNAL 143 (387)
Q Consensus 97 ~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~-------~~~~~~~a~~lgiP~v~ 143 (387)
..+.+.+++++- ++|+||.-.- .+.....|-..|||++.
T Consensus 55 -~~~~i~~~i~~~-------~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 55 -GRPNIVDLIKNG-------EIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred -CchhHHHHHHcC-------CeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 112345555554 7999998432 23455778889999885
No 165
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=77.62 E-value=39 Score=27.93 Aligned_cols=37 Identities=14% Similarity=0.207 Sum_probs=33.9
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEe
Q 040467 4 RKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVN 41 (387)
Q Consensus 4 ~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~ 41 (387)
.+-.|.+++..+.|-....+.+|-+.+. +|++|.++-
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g-~G~~V~ivQ 57 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVG-HGKKVGVVQ 57 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHH-CCCeEEEEE
Confidence 4568999999999999999999999999 999999885
No 166
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=77.45 E-value=4 Score=31.68 Aligned_cols=38 Identities=13% Similarity=0.201 Sum_probs=35.7
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEe
Q 040467 3 QRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVN 41 (387)
Q Consensus 3 ~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~ 41 (387)
++|+||++.+.+.-||=.-.--+++.|+. .|.+|....
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d-~GfeVi~~g 47 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALAD-AGFEVINLG 47 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHh-CCceEEecC
Confidence 47899999999999999999999999999 999999875
No 167
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=77.23 E-value=26 Score=30.26 Aligned_cols=30 Identities=17% Similarity=0.028 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 20 IPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 20 ~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
.-+..|+++|++ .| +|+++.+...+...-.
T Consensus 14 ~Gi~aL~~~l~~-~g-~V~VvAP~~~~Sg~g~ 43 (244)
T TIGR00087 14 PGIRALYQALKE-LG-EVTVVAPARQRSGTGH 43 (244)
T ss_pred HhHHHHHHHHHh-CC-CEEEEeCCCCcccccc
Confidence 347789999999 98 8999998877765554
No 168
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=77.15 E-value=6.4 Score=35.52 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=34.5
Q ss_pred CCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 1 MAQRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 1 ~~~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
|.|.+++|+++-.|+.| .-+|..|++ .||+|+++.-.. .+.+.+
T Consensus 1 ~~~~~m~I~IiG~GaiG-----~~lA~~L~~-~g~~V~~~~r~~-~~~~~~ 44 (313)
T PRK06249 1 MDSETPRIGIIGTGAIG-----GFYGAMLAR-AGFDVHFLLRSD-YEAVRE 44 (313)
T ss_pred CCCcCcEEEEECCCHHH-----HHHHHHHHH-CCCeEEEEEeCC-HHHHHh
Confidence 45667899999999888 457889999 999999998654 344555
No 169
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=77.15 E-value=20 Score=25.34 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=21.8
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 22 FLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 22 ~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
++.+++.|.+ .|++| ++++.....+++
T Consensus 2 ~~~~~~~l~~-lG~~i--~AT~gTa~~L~~ 28 (90)
T smart00851 2 LVELAKRLAE-LGFEL--VATGGTAKFLRE 28 (90)
T ss_pred HHHHHHHHHH-CCCEE--EEccHHHHHHHH
Confidence 4689999999 99988 355677788888
No 170
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=76.87 E-value=14 Score=26.82 Aligned_cols=37 Identities=11% Similarity=-0.101 Sum_probs=24.9
Q ss_pred HHHHHHHHhhhhccCCCCCeEEEeCCCch---hhHHHHHHhCCceEE
Q 040467 100 PHFRKLINGLIDEQNGHKPVCIIADMFFA---WSAEIAQEYGIFNAL 143 (387)
Q Consensus 100 ~~~~~ll~~~~~~~~~~~pD~vV~D~~~~---~~~~~a~~lgiP~v~ 143 (387)
+.+.++.++. ++|+||.-.-.+ +..+..++.|||++.
T Consensus 52 ~~l~~~a~~~-------~idlvvvGPE~pL~~Gl~D~l~~~gi~vfG 91 (100)
T PF02844_consen 52 EELADFAKEN-------KIDLVVVGPEAPLVAGLADALRAAGIPVFG 91 (100)
T ss_dssp HHHHHHHHHT-------TESEEEESSHHHHHTTHHHHHHHTT-CEES
T ss_pred HHHHHHHHHc-------CCCEEEECChHHHHHHHHHHHHHCCCcEEC
Confidence 3455566666 899999987666 334666778998754
No 171
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=76.16 E-value=28 Score=27.79 Aligned_cols=92 Identities=15% Similarity=0.034 Sum_probs=52.7
Q ss_pred HHHHHHHHHhCCCcEEEEEeC---Ccchhh----hhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCCCCchhHHHHH
Q 040467 22 FLALALHLENTNRYTITFVNT---PSNLKK----LKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFHLFPNFFES 94 (387)
Q Consensus 22 ~l~la~~L~~~rGh~Vt~~~~---~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (387)
++..|++|++..|.+|+.++. +...+. +...|. .. .+.+..+ .+.. ..
T Consensus 20 ~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G~--d~--v~~~~~~----~~~~-----------------~~ 74 (164)
T PF01012_consen 20 ALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYGA--DK--VYHIDDP----ALAE-----------------YD 74 (164)
T ss_dssp HHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTTE--SE--EEEEE-G----GGTT-----------------C-
T ss_pred HHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcCC--cE--EEEecCc----cccc-----------------cC
Confidence 788999999857888887763 233333 333332 22 2322211 0000 01
Q ss_pred HhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCch---hhHHHHHHhCCceEEEc
Q 040467 95 TLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFA---WSAEIAQEYGIFNALFV 145 (387)
Q Consensus 95 ~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~---~~~~~a~~lgiP~v~~~ 145 (387)
.+.....+.+++++. +||+|+.-.... .+..+|.++|.|++.-.
T Consensus 75 ~~~~a~~l~~~~~~~-------~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v 121 (164)
T PF01012_consen 75 PEAYADALAELIKEE-------GPDLVLFGSTSFGRDLAPRLAARLGAPLVTDV 121 (164)
T ss_dssp HHHHHHHHHHHHHHH-------T-SEEEEESSHHHHHHHHHHHHHHT-EEEEEE
T ss_pred HHHHHHHHHHHHHhc-------CCCEEEEcCcCCCCcHHHHHHHHhCCCccceE
Confidence 133455566677776 899999876555 45688999999998743
No 172
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=75.56 E-value=13 Score=32.50 Aligned_cols=30 Identities=7% Similarity=-0.115 Sum_probs=20.1
Q ss_pred HHHHHHHHHhC--CCcEEEEEeCCcchhhhhh
Q 040467 22 FLALALHLENT--NRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 22 ~l~la~~L~~~--rGh~Vt~~~~~~~~~~~~~ 51 (387)
+.+|+++|++. +|++|+++.|...+.-.-.
T Consensus 16 l~aL~~~l~~~~~~~~~V~VVAP~~eqSg~gh 47 (261)
T PRK13931 16 LEVLEQIATELAGPDGEVWTVAPAFEQSGVGH 47 (261)
T ss_pred HHHHHHHHHHhccCCCeEEEEeCCCCCCCCcc
Confidence 56677777651 3579999998776654433
No 173
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=75.44 E-value=17 Score=31.85 Aligned_cols=42 Identities=24% Similarity=0.239 Sum_probs=33.1
Q ss_pred CCcEEeccccCHHHhhCccCcceeeeccChhHHHHHHHcCCcccC
Q 040467 343 GQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 343 ~~~v~~~~~~pq~~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l~ 387 (387)
...+.+.+-.+-.++|.+++ ++||-.+- .-.||+.+|+|++|
T Consensus 182 ~~~~~~~~~~~~~~Ll~~s~--~VvtinSt-vGlEAll~gkpVi~ 223 (269)
T PF05159_consen 182 PNVVIIDDDVNLYELLEQSD--AVVTINST-VGLEALLHGKPVIV 223 (269)
T ss_pred CCeEEECCCCCHHHHHHhCC--EEEEECCH-HHHHHHHcCCceEE
Confidence 44556667788899999965 58877665 67899999999985
No 174
>PRK14098 glycogen synthase; Provisional
Probab=74.91 E-value=19 Score=34.84 Aligned_cols=95 Identities=8% Similarity=-0.038 Sum_probs=51.5
Q ss_pred eEEEecCCCcC-CCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEeccccCHH--
Q 040467 279 VIYVSFGSQNT-IAASQMMQLAMALEACGKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQV-- 355 (387)
Q Consensus 279 ~v~vs~GS~~~-~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~-- 355 (387)
.++...|.+.. ...+.+...+.-+.+.+.++++ +|.+. ...-+.+.+.....+.++.+..+++..
T Consensus 308 ~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvi-vG~G~-----------~~~~~~l~~l~~~~~~~V~~~g~~~~~~~ 375 (489)
T PRK14098 308 PLVGVIINFDDFQGAELLAESLEKLVELDIQLVI-CGSGD-----------KEYEKRFQDFAEEHPEQVSVQTEFTDAFF 375 (489)
T ss_pred CEEEEeccccccCcHHHHHHHHHHHHhcCcEEEE-EeCCC-----------HHHHHHHHHHHHHCCCCEEEEEecCHHHH
Confidence 45566676653 2234433333334334555544 44331 101123333333336788888888865
Q ss_pred -HhhCccCcceeeecc---C-hhHHHHHHHcCCcccC
Q 040467 356 -EILSHKSISAFLSHC---G-WNSVLEALSHRVPIIG 387 (387)
Q Consensus 356 -~lL~~~~~~~~v~HG---G-~~s~~eal~~GvP~l~ 387 (387)
.+++.+++ ||.-. | ..+..||+++|+|.|+
T Consensus 376 ~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv 410 (489)
T PRK14098 376 HLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVA 410 (489)
T ss_pred HHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEE
Confidence 47777665 66432 2 2378899999987663
No 175
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=74.62 E-value=9 Score=28.69 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=33.5
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCc
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPS 44 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~ 44 (387)
+|+++...+..-|-.-+.-++..|.+ .||+|.++-...
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~-~G~~v~~~d~~~ 38 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRK-AGHEVDILDANV 38 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHH-TTBEEEEEESSB
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHH-CCCeEEEECCCC
Confidence 47899999999999999999999999 999999995433
No 176
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=74.06 E-value=14 Score=35.34 Aligned_cols=39 Identities=13% Similarity=0.182 Sum_probs=32.4
Q ss_pred ccEEEEEcCCCcccHHHH------------HHHHHHHHhCCCcEEEEEeCCc
Q 040467 5 KENIVMFPLMAQGHTIPF------------LALALHLENTNRYTITFVNTPS 44 (387)
Q Consensus 5 ~~~il~~~~~~~GH~~P~------------l~la~~L~~~rGh~Vt~~~~~~ 44 (387)
..|||+...|++=-+.|. ..||+++.+ ||++||+++.+.
T Consensus 256 gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~-~GA~VtlI~Gp~ 306 (475)
T PRK13982 256 GRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAA-AGAEVTLISGPV 306 (475)
T ss_pred CCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHH-CCCcEEEEeCCc
Confidence 457888888887777775 589999999 999999998764
No 177
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=73.99 E-value=26 Score=28.68 Aligned_cols=105 Identities=14% Similarity=0.095 Sum_probs=54.8
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCcE--EEE-EeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCC
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENTNRYT--ITF-VNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDS 82 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~rGh~--Vt~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 82 (387)
|||+|+.++.. ..+..+..+|.+ ++++ |.. ++.++.......... .++....+... .
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~-~~~~~~iv~Vit~~~~~~~~~~~~~--~~~~~~~~~~~----~---------- 60 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKA-RGHNVEIVLVITNPDKPRGRSRAIK--NGIPAQVADEK----N---------- 60 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHT-TSSEEEEEEEEESSTTTHHHHHHHH--TTHHEEEHHGG----G----------
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHh-CCCCceEEEEecccccccccccccc--CCCCEEecccc----C----------
Confidence 47999977765 456667789999 9997 443 343332221111111 33333333211 0
Q ss_pred CCCCchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCch-hhHHHHHHhCCceEEEcc
Q 040467 83 LPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFA-WSAEIAQEYGIFNALFVG 146 (387)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~-~~~~~a~~lgiP~v~~~~ 146 (387)
+.......+.+.+.++++ +||++|+-.+.. ....+-+.....++-+.+
T Consensus 61 ---------~~~~~~~~~~~~~~l~~~-------~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHp 109 (181)
T PF00551_consen 61 ---------FQPRSENDEELLELLESL-------NPDLIVVAGYGRILPKEFLSIPPYGIINIHP 109 (181)
T ss_dssp ---------SSSHHHHHHHHHHHHHHT-------T-SEEEESS-SS---HHHHHHSTTSEEEEES
T ss_pred ---------CCchHhhhhHHHHHHHhh-------ccceeehhhhHHHhhhhhhhcccccEEEEee
Confidence 000022344456677777 899988765543 445556666766677654
No 178
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=73.02 E-value=16 Score=27.87 Aligned_cols=38 Identities=18% Similarity=0.354 Sum_probs=28.3
Q ss_pred eeEEEecCCCcCCCHHHHHHHHHHHHh--CCCcEEEEEcC
Q 040467 278 SVIYVSFGSQNTIAASQMMQLAMALEA--CGKNFIWVVKP 315 (387)
Q Consensus 278 ~~v~vs~GS~~~~~~~~~~~~~~a~~~--~~~~~l~~~~~ 315 (387)
.+|+++|||......+.+..+.+.+++ .+..+-|.+..
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~afts 41 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFTS 41 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEecH
Confidence 489999999987555667778887755 56678887653
No 179
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=72.67 E-value=5.8 Score=28.47 Aligned_cols=84 Identities=21% Similarity=0.133 Sum_probs=49.1
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCCCCchhHHHHHHhhhhHH
Q 040467 22 FLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFHLFPNFFESTLSFKPH 101 (387)
Q Consensus 22 ~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (387)
++++|++|.+ .|++ +++++.-...+.+ .++....+-.. ...+. . +. -...
T Consensus 2 ~~~~a~~l~~-lG~~--i~AT~gTa~~L~~-----~Gi~~~~v~~~---~~~~~---~----~~------------g~~~ 51 (95)
T PF02142_consen 2 IVPLAKRLAE-LGFE--IYATEGTAKFLKE-----HGIEVTEVVNK---IGEGE---S----PD------------GRVQ 51 (95)
T ss_dssp HHHHHHHHHH-TTSE--EEEEHHHHHHHHH-----TT--EEECCEE---HSTG----G----GT------------HCHH
T ss_pred HHHHHHHHHH-CCCE--EEEChHHHHHHHH-----cCCCceeeeee---cccCc---c----CC------------chhH
Confidence 5789999999 9955 5677888889998 66665544210 00000 0 00 0004
Q ss_pred HHHHHHhhhhccCCCCCeEEEeCCCchhh---------HHHHHHhCCceE
Q 040467 102 FRKLINGLIDEQNGHKPVCIIADMFFAWS---------AEIAQEYGIFNA 142 (387)
Q Consensus 102 ~~~ll~~~~~~~~~~~pD~vV~D~~~~~~---------~~~a~~lgiP~v 142 (387)
+.+++++- +.|+||....-... ..+|...+||++
T Consensus 52 i~~~i~~~-------~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 52 IMDLIKNG-------KIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHHHTT-------SEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred HHHHHHcC-------CeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 55566655 89999987654422 356778888875
No 180
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=71.87 E-value=42 Score=26.97 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=34.3
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchh
Q 040467 8 IVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLK 47 (387)
Q Consensus 8 il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~ 47 (387)
+++...++.|-......++..|++ .|.+|.++..+.++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~-~g~~v~~i~~D~~~~ 41 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKK-KGKKVLLVAADTYRP 41 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-CCCcEEEEEcCCCCh
Confidence 677788899999999999999999 999999998776654
No 181
>PRK09165 replicative DNA helicase; Provisional
Probab=71.72 E-value=21 Score=34.65 Aligned_cols=44 Identities=14% Similarity=0.140 Sum_probs=35.5
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCC---------------CcEEEEEeCCcchhhhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTN---------------RYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~r---------------Gh~Vt~~~~~~~~~~~~~ 51 (387)
=+++..-|+.|-..-.+.+|...+. + |..|.|++.+-....+..
T Consensus 219 livIaarpg~GKT~~al~ia~~~a~-~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~ 277 (497)
T PRK09165 219 LIILAGRPSMGKTALATNIAFNAAK-AYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLAT 277 (497)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHH-hhcccccccccccccCCCeEEEEeCcCCHHHHHH
Confidence 3677778899999999999988875 4 789999998777665544
No 182
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=71.72 E-value=10 Score=32.52 Aligned_cols=40 Identities=10% Similarity=0.040 Sum_probs=33.8
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLK 47 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~ 47 (387)
-+++...++.|-..-...++.+..+ +|..|.|++.+...+
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~e~~~~ 66 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVITTENTSK 66 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEEcCCCHH
Confidence 4666777899999999999999889 999999999866543
No 183
>PRK06988 putative formyltransferase; Provisional
Probab=71.49 E-value=26 Score=31.63 Aligned_cols=32 Identities=16% Similarity=0.057 Sum_probs=23.5
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCC
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTP 43 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~ 43 (387)
+||+|+..+.. .+...++|.+ +||+|..+.+.
T Consensus 3 mkIvf~Gs~~~-----a~~~L~~L~~-~~~~i~~Vvt~ 34 (312)
T PRK06988 3 PRAVVFAYHNV-----GVRCLQVLLA-RGVDVALVVTH 34 (312)
T ss_pred cEEEEEeCcHH-----HHHHHHHHHh-CCCCEEEEEcC
Confidence 36999976653 3566788889 99998877654
No 184
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=71.14 E-value=27 Score=33.40 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=31.5
Q ss_pred CCCCccEEEEEcCC-CcccHHHHHHHHHHHHhCCCcEEEEEeC
Q 040467 1 MAQRKENIVMFPLM-AQGHTIPFLALALHLENTNRYTITFVNT 42 (387)
Q Consensus 1 ~~~~~~~il~~~~~-~~GH~~P~l~la~~L~~~rGh~Vt~~~~ 42 (387)
|||+ +|++.... ..|-..-...|++.|++ +|++|..+-+
T Consensus 1 ~~m~--~i~I~gt~s~~GKT~it~~L~~~L~~-~G~~V~~fK~ 40 (451)
T PRK01077 1 MRMP--ALVIAAPASGSGKTTVTLGLMRALRR-RGLRVQPFKV 40 (451)
T ss_pred CCCc--EEEEEeCCCCCcHHHHHHHHHHHHHh-CCCCcceeec
Confidence 5554 56666554 56999999999999999 9999998865
No 185
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=71.03 E-value=26 Score=29.61 Aligned_cols=35 Identities=11% Similarity=0.156 Sum_probs=30.6
Q ss_pred EEEEEcCC--CcccHHHHHHHHHHHHhCCCcEEEEEeC
Q 040467 7 NIVMFPLM--AQGHTIPFLALALHLENTNRYTITFVNT 42 (387)
Q Consensus 7 ~il~~~~~--~~GH~~P~l~la~~L~~~rGh~Vt~~~~ 42 (387)
+|++++++ +-|-..-.-+|+.+|++ +|+.|.++-.
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~-~GkKv~liD~ 39 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQ-LGKKVVLIDF 39 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHH-cCCeEEEEec
Confidence 47777775 88999999999999999 9999999854
No 186
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=70.96 E-value=29 Score=31.48 Aligned_cols=45 Identities=13% Similarity=0.047 Sum_probs=39.9
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC-CCcEEEEEeCCcchhhhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENT-NRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~-rGh~Vt~~~~~~~~~~~~~ 51 (387)
|||++-..+.|++.=..++.++|+++ .+.+|++++.+.+.+.++.
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~ 46 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLER 46 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhc
Confidence 58999999999999999999999996 6999999998877666665
No 187
>PRK00784 cobyric acid synthase; Provisional
Probab=70.88 E-value=43 Score=32.41 Aligned_cols=35 Identities=11% Similarity=0.163 Sum_probs=29.5
Q ss_pred EEEEEcCC-CcccHHHHHHHHHHHHhCCCcEEEEEeC
Q 040467 7 NIVMFPLM-AQGHTIPFLALALHLENTNRYTITFVNT 42 (387)
Q Consensus 7 ~il~~~~~-~~GH~~P~l~la~~L~~~rGh~Vt~~~~ 42 (387)
+|.+.... ..|-..-...|++.|++ +|++|..+-+
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~-~G~~v~~~Kp 39 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILAR-RGYRVAPFKA 39 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHH-CCCeEecccc
Confidence 36666554 47999999999999999 9999998865
No 188
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=70.83 E-value=30 Score=25.65 Aligned_cols=85 Identities=18% Similarity=0.102 Sum_probs=53.7
Q ss_pred cHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCCCCchhHHHHHHhh
Q 040467 18 HTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFHLFPNFFESTLS 97 (387)
Q Consensus 18 H~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (387)
+=.=++.+|+.|.+ .|+++ ++++.....+++ .|+....+--. +.+
T Consensus 10 ~K~~~~~~a~~l~~-~G~~i--~AT~gTa~~L~~-----~Gi~~~~v~~~------~~~--------------------- 54 (112)
T cd00532 10 VKAMLVDLAPKLSS-DGFPL--FATGGTSRVLAD-----AGIPVRAVSKR------HED--------------------- 54 (112)
T ss_pred cHHHHHHHHHHHHH-CCCEE--EECcHHHHHHHH-----cCCceEEEEec------CCC---------------------
Confidence 34558899999999 99988 456777888888 55566554211 010
Q ss_pred hhHHHHHHHHh-hhhccCCCCCeEEEe--CCCc--------hhhHHHHHHhCCceEEE
Q 040467 98 FKPHFRKLING-LIDEQNGHKPVCIIA--DMFF--------AWSAEIAQEYGIFNALF 144 (387)
Q Consensus 98 ~~~~~~~ll~~-~~~~~~~~~pD~vV~--D~~~--------~~~~~~a~~lgiP~v~~ 144 (387)
..+.+.+++++ - ++|+||. |... +.....|...+||++.-
T Consensus 55 g~~~i~~~i~~~g-------~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T~ 105 (112)
T cd00532 55 GEPTVDAAIAEKG-------KFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTTP 105 (112)
T ss_pred CCcHHHHHHhCCC-------CEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEEC
Confidence 11234455554 4 7899987 3222 12346688899998763
No 189
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=70.79 E-value=6.8 Score=34.14 Aligned_cols=46 Identities=28% Similarity=0.392 Sum_probs=41.5
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 5 KENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 5 ~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
...++|+..|+.|-..=..+||.+|.+ +|+.|+|++.++....+..
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~-~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLK-AGISVLFITAPDLLSKLKA 150 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEEEHHHHHHHHHH
Confidence 347999999999999999999999998 9999999999888777777
No 190
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=70.38 E-value=38 Score=29.55 Aligned_cols=40 Identities=10% Similarity=0.094 Sum_probs=29.2
Q ss_pred hHHHHHHHHhhhhccCCCCCeEEEeC-----CCch-hhHHHHHHhCCceEEEc
Q 040467 99 KPHFRKLINGLIDEQNGHKPVCIIAD-----MFFA-WSAEIAQEYGIFNALFV 145 (387)
Q Consensus 99 ~~~~~~ll~~~~~~~~~~~pD~vV~D-----~~~~-~~~~~a~~lgiP~v~~~ 145 (387)
...+.+.++.. ++|+|++- .-+- -+..+|+.||+|++.+.
T Consensus 100 a~~Laa~~~~~-------~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v 145 (260)
T COG2086 100 AKALAAAVKKI-------GPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYV 145 (260)
T ss_pred HHHHHHHHHhc-------CCCEEEEecccccCCccchHHHHHHHhCCceeeeE
Confidence 44566677777 89999863 3233 66799999999998864
No 191
>PHA01633 putative glycosyl transferase group 1
Probab=69.90 E-value=46 Score=30.39 Aligned_cols=43 Identities=12% Similarity=0.064 Sum_probs=29.8
Q ss_pred CCcEEec---cccCHH---HhhCccCcceeeec----cChhHHHHHHHcCCcccC
Q 040467 343 GQGLVVQ---KWAPQV---EILSHKSISAFLSH----CGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 343 ~~~v~~~---~~~pq~---~lL~~~~~~~~v~H----GG~~s~~eal~~GvP~l~ 387 (387)
++++.+. +++++. +++..+++ ||.- |=.+++.||+++|+|+|+
T Consensus 200 ~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVa 252 (335)
T PHA01633 200 PANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIH 252 (335)
T ss_pred CCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEE
Confidence 5677776 455654 45666664 7753 335589999999999985
No 192
>PRK14099 glycogen synthase; Provisional
Probab=69.57 E-value=7.7 Score=37.47 Aligned_cols=39 Identities=10% Similarity=-0.022 Sum_probs=30.3
Q ss_pred CCccEEEEEcCC------CcccHHHHHHHHHHHHhCCCcEEEEEeC
Q 040467 3 QRKENIVMFPLM------AQGHTIPFLALALHLENTNRYTITFVNT 42 (387)
Q Consensus 3 ~~~~~il~~~~~------~~GH~~P~l~la~~L~~~rGh~Vt~~~~ 42 (387)
|+++|||+++.- +-|=-..+-.|.++|++ +||+|.++.|
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~-~g~~v~v~~P 45 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKA-HGVEVRTLVP 45 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHH-CCCcEEEEeC
Confidence 467899999863 22444456788999999 9999999986
No 193
>PRK10867 signal recognition particle protein; Provisional
Probab=69.52 E-value=35 Score=32.36 Aligned_cols=42 Identities=21% Similarity=0.170 Sum_probs=36.0
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCC-CcEEEEEeCCcchhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTN-RYTITFVNTPSNLKKL 49 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~r-Gh~Vt~~~~~~~~~~~ 49 (387)
-|+++..++.|-..-...||..|++ + |+.|.+++...++...
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~-~~G~kV~lV~~D~~R~aa 144 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKK-KKKKKVLLVAADVYRPAA 144 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH-hcCCcEEEEEccccchHH
Confidence 4667777799999999999999999 8 9999999988776643
No 194
>PRK07206 hypothetical protein; Provisional
Probab=69.44 E-value=23 Score=33.37 Aligned_cols=31 Identities=13% Similarity=0.070 Sum_probs=23.6
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCC
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTP 43 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~ 43 (387)
+|+++-.... ...+++++++ +|+++.+++..
T Consensus 4 ~~liv~~~~~-----~~~~~~a~~~-~G~~~v~v~~~ 34 (416)
T PRK07206 4 KVVIVDPFSS-----GKFLAPAFKK-RGIEPIAVTSS 34 (416)
T ss_pred eEEEEcCCch-----HHHHHHHHHH-cCCeEEEEEcC
Confidence 5777776433 3468999999 99999888754
No 195
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=69.02 E-value=36 Score=28.29 Aligned_cols=39 Identities=15% Similarity=0.184 Sum_probs=32.2
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchh
Q 040467 8 IVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLK 47 (387)
Q Consensus 8 il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~ 47 (387)
|+|+-..+.|-..-...||..++. +|..|.+++...++.
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~-~~~~v~lis~D~~R~ 42 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKL-KGKKVALISADTYRI 42 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH-TT--EEEEEESTSST
T ss_pred EEEECCCCCchHhHHHHHHHHHhh-ccccceeecCCCCCc
Confidence 666777788999999999999999 899999999877654
No 196
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=69.00 E-value=61 Score=26.32 Aligned_cols=35 Identities=14% Similarity=0.215 Sum_probs=30.9
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEE
Q 040467 5 KENIVMFPLMAQGHTIPFLALALHLENTNRYTITFV 40 (387)
Q Consensus 5 ~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~ 40 (387)
+--|.+++..+.|-..-.+.+|-+.+. +|++|.++
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~-~g~~v~iv 39 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALG-HGKKVGVI 39 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHH-CCCeEEEE
Confidence 456888999999999999999999999 99999655
No 197
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=68.46 E-value=66 Score=26.48 Aligned_cols=56 Identities=18% Similarity=0.072 Sum_probs=35.2
Q ss_pred EEEEEcC---CC-cccHHH-HHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccC
Q 040467 7 NIVMFPL---MA-QGHTIP-FLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPF 66 (387)
Q Consensus 7 ~il~~~~---~~-~GH~~P-~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 66 (387)
||.++.+ |+ +|=+.- .-.|+..|++ +||+||+.|.....+.-.. .. .+++...+|.
T Consensus 3 kIaIiGtrGIPa~YGGfET~ve~L~~~l~~-~g~~v~Vyc~~~~~~~~~~-~y--~gv~l~~i~~ 63 (185)
T PF09314_consen 3 KIAIIGTRGIPARYGGFETFVEELAPRLVS-KGIDVTVYCRSDYYPYKEF-EY--NGVRLVYIPA 63 (185)
T ss_pred eEEEEeCCCCCcccCcHHHHHHHHHHHHhc-CCceEEEEEccCCCCCCCc-cc--CCeEEEEeCC
Confidence 4566543 33 454444 4468889999 9999999997654432211 11 6777887764
No 198
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=68.29 E-value=53 Score=30.53 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=27.2
Q ss_pred ccEEEEEc-CCCcccHHHHHHHHHHHHhCCCcEEEEEeCC
Q 040467 5 KENIVMFP-LMAQGHTIPFLALALHLENTNRYTITFVNTP 43 (387)
Q Consensus 5 ~~~il~~~-~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~ 43 (387)
..+|+++- .|..|. .+|+.|++ +||+|+++...
T Consensus 98 ~~~I~IiGG~GlmG~-----slA~~l~~-~G~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGR-----LFAKMLTL-SGYQVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhH-----HHHHHHHH-CCCeEEEeCCC
Confidence 35799997 788885 58999999 99999999753
No 199
>PRK08506 replicative DNA helicase; Provisional
Probab=67.73 E-value=31 Score=33.22 Aligned_cols=44 Identities=20% Similarity=0.200 Sum_probs=37.0
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
=|++..-|+.|-..-.+.+|...++ .|+.|.|++.+-....+..
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~-~g~~V~~fSlEMs~~ql~~ 237 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALN-QDKGVAFFSLEMPAEQLML 237 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHh-cCCcEEEEeCcCCHHHHHH
Confidence 4677778899999999999999988 9999999998776555544
No 200
>PRK05595 replicative DNA helicase; Provisional
Probab=67.69 E-value=27 Score=33.30 Aligned_cols=44 Identities=14% Similarity=0.082 Sum_probs=35.6
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHH-hCCCcEEEEEeCCcchhhhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLE-NTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~-~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
=+++-.-|+.|-..-.+.+|..++ + .|+.|.|++.+-....+..
T Consensus 203 liviaarpg~GKT~~al~ia~~~a~~-~g~~vl~fSlEms~~~l~~ 247 (444)
T PRK05595 203 MILIAARPSMGKTTFALNIAEYAALR-EGKSVAIFSLEMSKEQLAY 247 (444)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHH-cCCcEEEEecCCCHHHHHH
Confidence 366677789999999999999876 5 7999999998776555544
No 201
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=67.46 E-value=37 Score=29.02 Aligned_cols=44 Identities=16% Similarity=0.167 Sum_probs=35.7
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCC-CcEEEEEeCCcchhhhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTN-RYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~r-Gh~Vt~~~~~~~~~~~~~ 51 (387)
-+++...|+.|-..-.+.++..++. . |+.|.+++.+.....+..
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~~~~~-~~g~~vly~s~E~~~~~~~~ 59 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIAK-KQGKPVLFFSLEMSKEQLLQ 59 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHH-hCCCceEEEeCCCCHHHHHH
Confidence 3566777889999999999999888 7 999999998876554444
No 202
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=67.40 E-value=14 Score=30.14 Aligned_cols=42 Identities=12% Similarity=-0.047 Sum_probs=35.7
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhh
Q 040467 8 IVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLK 50 (387)
Q Consensus 8 il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~ 50 (387)
+++...|+.|-..-.+.++.+..+ .|..|.+++.+...+.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~-~g~~v~~~s~e~~~~~~~ 43 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-RGEPGLYVTLEESPEELI 43 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-CCCcEEEEECCCCHHHHH
Confidence 577788899999999999999999 999999999876655443
No 203
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=67.08 E-value=12 Score=36.06 Aligned_cols=44 Identities=11% Similarity=0.025 Sum_probs=37.5
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
-+++...|+.|-..-.+.++.+.++ +|..|.+++.++..+.+..
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~-~ge~~~y~s~eEs~~~i~~ 308 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACA-NKERAILFAYEESRAQLLR 308 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEEeeCCHHHHHH
Confidence 4677777899999999999999999 9999999998876655544
No 204
>PRK06321 replicative DNA helicase; Provisional
Probab=67.00 E-value=44 Score=32.16 Aligned_cols=45 Identities=18% Similarity=0.173 Sum_probs=35.8
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
-|++..-|+.|-..-.+.+|...+...|..|.|++.+-....+..
T Consensus 228 LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~ 272 (472)
T PRK06321 228 LMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIH 272 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHH
Confidence 467778899999999999999987416999999997766554444
No 205
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=66.87 E-value=64 Score=25.78 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=29.9
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEE
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFV 40 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~ 40 (387)
-|.+++.++.|-....+.+|-+.+. +|++|.++
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~-~g~~v~~v 36 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALG-HGYRVGVV 36 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEE
Confidence 4788899999999999999999999 99999995
No 206
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=66.65 E-value=45 Score=28.83 Aligned_cols=80 Identities=18% Similarity=0.073 Sum_probs=48.9
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCCCCchhHHHHHHhhhhHH
Q 040467 22 FLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFHLFPNFFESTLSFKPH 101 (387)
Q Consensus 22 ~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (387)
-..||++|.. .++.+++.+...+-....+.. + . ..... ..-.+.
T Consensus 14 ar~la~~L~~-~~~~~~~ss~t~~g~~l~~~~----~-~-~~~~G-----------------------------~l~~e~ 57 (257)
T COG2099 14 ARALAKKLAA-APVDIILSSLTGYGAKLAEQI----G-P-VRVGG-----------------------------FLGAEG 57 (257)
T ss_pred HHHHHHHhhc-cCccEEEEEcccccccchhcc----C-C-eeecC-----------------------------cCCHHH
Confidence 4689999999 988888877654433322200 0 0 10000 011345
Q ss_pred HHHHHHhhhhccCCCCCeEEEeCCCchhhH-------HHHHHhCCceEEEc
Q 040467 102 FRKLINGLIDEQNGHKPVCIIADMFFAWSA-------EIAQEYGIFNALFV 145 (387)
Q Consensus 102 ~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~-------~~a~~lgiP~v~~~ 145 (387)
+.+++++. +.|+|| |...+++. .+|+..|||++.+-
T Consensus 58 l~~~l~e~-------~i~llI-DATHPyAa~iS~Na~~aake~gipy~r~e 100 (257)
T COG2099 58 LAAFLREE-------GIDLLI-DATHPYAARISQNAARAAKETGIPYLRLE 100 (257)
T ss_pred HHHHHHHc-------CCCEEE-ECCChHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 67788777 677655 66666554 66888999999983
No 207
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=66.61 E-value=19 Score=30.58 Aligned_cols=44 Identities=14% Similarity=0.111 Sum_probs=35.8
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
-+++...|+.|-..-.+.++..-.+ +|+.|.+++.+...+.+.+
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~-~g~~~~y~s~e~~~~~l~~ 61 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLK-NGEKAMYISLEEREERILG 61 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEECCCCHHHHHH
Confidence 4566667799999999999999889 9999999998776655544
No 208
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=66.14 E-value=22 Score=28.45 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=24.8
Q ss_pred cCCCcccHHHHHHHHHHHHhCCCcEEEEE
Q 040467 12 PLMAQGHTIPFLALALHLENTNRYTITFV 40 (387)
Q Consensus 12 ~~~~~GH~~P~l~la~~L~~~rGh~Vt~~ 40 (387)
+.+..|-..-.+.|+..|++ +|.+|.++
T Consensus 5 t~~~~GKT~va~~L~~~l~~-~g~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKK-AGYSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHHHH-CCCcEEEE
Confidence 34567999999999999999 99999997
No 209
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=66.00 E-value=9.3 Score=31.36 Aligned_cols=43 Identities=19% Similarity=0.151 Sum_probs=35.7
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
||++.-.++.|=+. ...+.++|++ +|++|.++.++.-.+.+..
T Consensus 3 ~Ill~vtGsiaa~~-~~~li~~L~~-~g~~V~vv~T~~A~~fi~~ 45 (182)
T PRK07313 3 NILLAVSGSIAAYK-AADLTSQLTK-RGYQVTVLMTKAATKFITP 45 (182)
T ss_pred EEEEEEeChHHHHH-HHHHHHHHHH-CCCEEEEEEChhHHHHcCH
Confidence 68888888877665 7999999999 9999999998877666554
No 210
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=65.87 E-value=1e+02 Score=28.58 Aligned_cols=43 Identities=16% Similarity=0.188 Sum_probs=35.5
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLK 50 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~ 50 (387)
-+++..-|+.|-..-++.+|..+++ .|..|.+++.++..+.+.
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~-~g~~VlYvs~EEs~~qi~ 126 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAK-RGGKVLYVSGEESPEQIK 126 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEECCcCHHHHH
Confidence 3566667899999999999999999 999999998876555543
No 211
>PRK08760 replicative DNA helicase; Provisional
Probab=65.87 E-value=22 Score=34.21 Aligned_cols=45 Identities=16% Similarity=0.083 Sum_probs=35.4
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
=|++..-|+.|-..-.+.+|...+.+.|+.|.|++.+-....+..
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~ 275 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAM 275 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHH
Confidence 467777799999999999999887515999999998776554443
No 212
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=65.84 E-value=53 Score=31.30 Aligned_cols=89 Identities=13% Similarity=0.143 Sum_probs=56.0
Q ss_pred CeeEEEecCCCcCCCHHHHHHHHHHHHh-CCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEeccccC--
Q 040467 277 NSVIYVSFGSQNTIAASQMMQLAMALEA-CGKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAP-- 353 (387)
Q Consensus 277 ~~~v~vs~GS~~~~~~~~~~~~~~a~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-- 353 (387)
..++++| ..+.++.+....++ ++..+=+..+... ...+..- ..++..+....+.+
T Consensus 283 ~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te~--------------s~kL~~L-~~y~nvvly~~~~~~~ 340 (438)
T TIGR02919 283 KQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTEM--------------SSKLMSL-DKYDNVKLYPNITTQK 340 (438)
T ss_pred ccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCcc--------------cHHHHHH-HhcCCcEEECCcChHH
Confidence 4577776 26666666666666 4556544443321 1222221 22244455555566
Q ss_pred HHHhhCccCcceeeeccC--hhHHHHHHHcCCcccC
Q 040467 354 QVEILSHKSISAFLSHCG--WNSVLEALSHRVPIIG 387 (387)
Q Consensus 354 q~~lL~~~~~~~~v~HGG--~~s~~eal~~GvP~l~ 387 (387)
-.+++..+++-+-|.||. ..++.||+.+|+|+++
T Consensus 341 l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~a 376 (438)
T TIGR02919 341 IQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILG 376 (438)
T ss_pred HHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEE
Confidence 346999999988888876 6799999999999984
No 213
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=65.66 E-value=16 Score=30.58 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=34.3
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeC
Q 040467 5 KENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNT 42 (387)
Q Consensus 5 ~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~ 42 (387)
+.+|++.+.++-.|-....=++.-|++ .|++|+++..
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~-~G~~vi~lG~ 118 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEA-NGFEVIDLGR 118 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHH-CCCEEEECCC
Confidence 568999999999999999999999999 9999998874
No 214
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=65.41 E-value=42 Score=25.01 Aligned_cols=94 Identities=16% Similarity=0.135 Sum_probs=57.8
Q ss_pred EEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCCCCchh
Q 040467 10 MFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFHLFP 89 (387)
Q Consensus 10 ~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (387)
|++.... +-.=++.+|+.|.+ .|++| ++++...+.+.+ .++.+..+.-. .+....
T Consensus 4 lisv~~~-dk~~~~~~a~~l~~-~G~~i--~aT~gTa~~L~~-----~gi~~~~v~~~---~~~~~~------------- 58 (116)
T cd01423 4 LISIGSY-SKPELLPTAQKLSK-LGYKL--YATEGTADFLLE-----NGIPVTPVAWP---SEEPQN------------- 58 (116)
T ss_pred EEecCcc-cchhHHHHHHHHHH-CCCEE--EEccHHHHHHHH-----cCCCceEeeec---cCCCCC-------------
Confidence 3444433 45568899999999 99887 457787888887 55555544200 000000
Q ss_pred HHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCC---------chhhHHHHHHhCCceEE
Q 040467 90 NFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMF---------FAWSAEIAQEYGIFNAL 143 (387)
Q Consensus 90 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~---------~~~~~~~a~~lgiP~v~ 143 (387)
-.+.+.+++++- ++|+||.-.. .+.....|-.+|||++.
T Consensus 59 --------~~~~i~~~i~~~-------~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 59 --------DKPSLRELLAEG-------KIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred --------CchhHHHHHHcC-------CceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 013455666654 8999998542 23345778889999863
No 215
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=64.73 E-value=9.4 Score=34.86 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=31.8
Q ss_pred CCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 1 MAQRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 1 ~~~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
||| ||.|+-.|..|. .+|..|++ +||+|+++......+.+.+
T Consensus 1 ~~m---kI~IiG~G~mG~-----~~A~~L~~-~G~~V~~~~r~~~~~~~~~ 42 (341)
T PRK08229 1 MMA---RICVLGAGSIGC-----YLGGRLAA-AGADVTLIGRARIGDELRA 42 (341)
T ss_pred CCc---eEEEECCCHHHH-----HHHHHHHh-cCCcEEEEecHHHHHHHHh
Confidence 555 599999998874 57899999 9999999976443344444
No 216
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=64.72 E-value=30 Score=32.69 Aligned_cols=44 Identities=18% Similarity=0.164 Sum_probs=36.1
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHH-hCCCcEEEEEeCCcchhhhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLE-NTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~-~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
=+++..-|+.|-..-.+.+|..++ + .|+.|.|++.+-....+..
T Consensus 196 liviag~pg~GKT~~al~ia~~~a~~-~g~~v~~fSlEm~~~~l~~ 240 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAENVALR-EGKPVLFFSLEMSAEQLGE 240 (421)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCCCHHHHHH
Confidence 467777889999999999998887 6 8999999998776555444
No 217
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=64.06 E-value=18 Score=30.05 Aligned_cols=39 Identities=13% Similarity=0.022 Sum_probs=35.6
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCc
Q 040467 5 KENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPS 44 (387)
Q Consensus 5 ~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~ 44 (387)
+.+|++.+.++--|-....-++.-|.+ +|++|+++....
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~-~G~~vi~LG~~v 122 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRA-NGFDVIDLGRDV 122 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHh-CCcEEEECCCCC
Confidence 568999999999999999999999999 999999998543
No 218
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=63.97 E-value=16 Score=25.15 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=30.6
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEE
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENTNRYTITFV 40 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~ 40 (387)
.-++++.++...|..-+-.+|+.|.+ .|..|...
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~-~G~~V~~~ 49 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAE-QGYAVFAY 49 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHh-CCCEEEEE
Confidence 35888999999999999999999999 99998766
No 219
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=63.93 E-value=18 Score=33.57 Aligned_cols=42 Identities=19% Similarity=0.277 Sum_probs=36.3
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 8 IVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 8 il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
||+=--|+.|--.=+++++..|++ +| .|.+++.++...++.-
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~-~~-~vLYVsGEES~~Qikl 137 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAK-RG-KVLYVSGEESLQQIKL 137 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHh-cC-cEEEEeCCcCHHHHHH
Confidence 566667899999999999999999 99 9999999887666654
No 220
>PRK07773 replicative DNA helicase; Validated
Probab=63.74 E-value=25 Score=36.90 Aligned_cols=45 Identities=16% Similarity=0.101 Sum_probs=36.0
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
=|++..-|+.|-..-.+.+|...+...|..|.|++.+-....+..
T Consensus 219 livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~ 263 (886)
T PRK07773 219 LIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVM 263 (886)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHH
Confidence 367777899999999999999987515899999998776665544
No 221
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=63.70 E-value=52 Score=31.12 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=35.3
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLK 47 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~ 47 (387)
-|+|+..++.|-..-...||..|++ +|+.|.+++...++.
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~-~G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQR-KGFKPCLVCADTFRA 141 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEcCcccch
Confidence 4677777899999999999999999 999999999887764
No 222
>PHA01630 putative group 1 glycosyl transferase
Probab=63.69 E-value=36 Score=30.99 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=24.7
Q ss_pred cccCHHH---hhCccCcceeee---ccC-hhHHHHHHHcCCcccC
Q 040467 350 KWAPQVE---ILSHKSISAFLS---HCG-WNSVLEALSHRVPIIG 387 (387)
Q Consensus 350 ~~~pq~~---lL~~~~~~~~v~---HGG-~~s~~eal~~GvP~l~ 387 (387)
.++|+.+ ++..+++ ||. ..| ..++.||+++|+|+|+
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIa 238 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVV 238 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEE
Confidence 3466555 4667665 552 232 5689999999999985
No 223
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=63.51 E-value=7.1 Score=31.10 Aligned_cols=32 Identities=25% Similarity=0.227 Sum_probs=27.3
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCc
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPS 44 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~ 44 (387)
+|.++..|.+|+ ++|..|++ +||+|++.+.+.
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~-~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLAD-NGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHH-CTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHH-cCCEEEEEeccH
Confidence 477888888886 78999999 999999998764
No 224
>PRK05920 aromatic acid decarboxylase; Validated
Probab=63.17 E-value=14 Score=30.94 Aligned_cols=44 Identities=25% Similarity=0.200 Sum_probs=35.0
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
.||++--.++.+= .=.+.+.++|.+ .||+|.++.++.-...+..
T Consensus 4 krIllgITGsiaa-~ka~~lvr~L~~-~g~~V~vi~T~~A~~fv~~ 47 (204)
T PRK05920 4 KRIVLAITGASGA-IYGVRLLECLLA-ADYEVHLVISKAAQKVLAT 47 (204)
T ss_pred CEEEEEEeCHHHH-HHHHHHHHHHHH-CCCEEEEEEChhHHHHHHH
Confidence 3677777776554 578999999999 9999999998887766654
No 225
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=62.75 E-value=76 Score=31.36 Aligned_cols=45 Identities=13% Similarity=0.083 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHhhhhccCCCCCeEEE----eCCCchhhHHHHHHhCCceEEEcchh
Q 040467 97 SFKPHFRKLINGLIDEQNGHKPVCII----ADMFFAWSAEIAQEYGIFNALFVGGG 148 (387)
Q Consensus 97 ~~~~~~~~ll~~~~~~~~~~~pD~vV----~D~~~~~~~~~a~~lgiP~v~~~~~~ 148 (387)
.+...++..++.. .+|.+| +|=..++.+..|.++++|.|.+.-.+
T Consensus 98 lIAdsiE~~~~a~-------~~Dg~V~i~~CDK~~PG~lMaaarlniPsi~v~gGp 146 (615)
T PRK12448 98 LIADSVEYMVNAH-------CADAMVCISNCDKITPGMLMAALRLNIPVVFVSGGP 146 (615)
T ss_pred HHHHHHHHHhhCC-------CcceEEEeccCCCchHHHHHHHHhcCCCEEEEeCCC
Confidence 3455555666655 789776 78888899999999999999987654
No 226
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=62.72 E-value=60 Score=30.79 Aligned_cols=41 Identities=22% Similarity=0.169 Sum_probs=35.0
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHH-hCCCcEEEEEeCCcchhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLE-NTNRYTITFVNTPSNLKK 48 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~-~~rGh~Vt~~~~~~~~~~ 48 (387)
-|+++..++.|-..-...||..|. + +|..|.++....++..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~-~g~kV~lV~~D~~R~~ 142 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKK-QGKKVLLVACDLYRPA 142 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHh-CCCeEEEEeccccchH
Confidence 466677779999999999999997 7 8999999998877664
No 227
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=62.62 E-value=45 Score=28.69 Aligned_cols=90 Identities=9% Similarity=-0.005 Sum_probs=0.0
Q ss_pred CCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCc-------------------chhhhhhcCCCCCCeeEE
Q 040467 2 AQRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPS-------------------NLKKLKSSLPQNSSIHLR 62 (387)
Q Consensus 2 ~~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~-------------------~~~~~~~~~~~~~~i~~~ 62 (387)
|+...+|+++..=.-==..-+-.....|++ +||+|++++... .++..+..|. ..+.+.
T Consensus 7 ~~~~~~vL~v~aHPDDe~~g~ggtla~~~~-~G~~V~v~~lT~Ge~g~~~~~~~l~~~R~~E~~~a~~~LGv--~~~~~l 83 (237)
T COG2120 7 MLDPLRVLVVFAHPDDEEIGCGGTLAKLAA-RGVEVTVVCLTLGEAGENGGELELGAVRRAEARAAARVLGV--RETIFL 83 (237)
T ss_pred cccCCcEEEEecCCcchhhccHHHHHHHHH-CCCeEEEEEccCCcccccCCccchHHHHHHHHHHHHHhcCC--Ccceec
Q ss_pred eccCCCCCCCCCCCCCCCCCCCCCchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEe
Q 040467 63 EIPFDGIAHDLPPCTENSDSLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIA 123 (387)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~ 123 (387)
.++.. ......+.....+.+++++. +||+|++
T Consensus 84 ~~~~~----------------------~~~~~~~~~~~~L~~ii~~~-------~P~~V~t 115 (237)
T COG2120 84 GFPDT----------------------GADADPEEITGALVAIIRRL-------RPDVVFT 115 (237)
T ss_pred CCCcc----------------------ccccChHHHHHHHHHHHHHh-------CCCEEEe
No 228
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=62.24 E-value=69 Score=26.88 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=24.0
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCc
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPS 44 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~ 44 (387)
++.++-.+-.| -.||+.|++ .||+|++.+...
T Consensus 3 ~~~i~GtGniG-----~alA~~~a~-ag~eV~igs~r~ 34 (211)
T COG2085 3 IIAIIGTGNIG-----SALALRLAK-AGHEVIIGSSRG 34 (211)
T ss_pred EEEEeccChHH-----HHHHHHHHh-CCCeEEEecCCC
Confidence 36666555544 578999999 999999997543
No 229
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=61.89 E-value=14 Score=27.96 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=25.2
Q ss_pred CcccHHHHHHHHHHHHhCCCcEEEEEeCCcc
Q 040467 15 AQGHTIPFLALALHLENTNRYTITFVNTPSN 45 (387)
Q Consensus 15 ~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~ 45 (387)
.--.+...+-++..|.. +|++||++.++..
T Consensus 14 iP~qissaiYls~klkk-kgf~v~VaateAa 43 (148)
T COG4081 14 IPPQISSAIYLSHKLKK-KGFDVTVAATEAA 43 (148)
T ss_pred CCccchHHHHHHHHhhc-cCccEEEecCHhh
Confidence 55667778899999999 9999999998743
No 230
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=61.85 E-value=13 Score=34.91 Aligned_cols=48 Identities=17% Similarity=0.038 Sum_probs=38.5
Q ss_pred CCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 2 AQRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 2 ~~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
|+++.||++.-.++. ...=...+.++|++ +|++|.++.++.-...+..
T Consensus 3 ~l~~k~IllgvTGsi-aa~k~~~lv~~L~~-~g~~V~vv~T~~A~~fi~~ 50 (399)
T PRK05579 3 MLAGKRIVLGVSGGI-AAYKALELVRRLRK-AGADVRVVMTEAAKKFVTP 50 (399)
T ss_pred CCCCCeEEEEEeCHH-HHHHHHHHHHHHHh-CCCEEEEEECHhHHHHHhH
Confidence 455678999888876 44477899999999 9999999998877666654
No 231
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=61.74 E-value=53 Score=28.37 Aligned_cols=107 Identities=13% Similarity=0.111 Sum_probs=60.0
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCCCCchhHHHHHH-hhhhH
Q 040467 22 FLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFHLFPNFFEST-LSFKP 100 (387)
Q Consensus 22 ~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 100 (387)
+-.+++.+.+ .|-+|-+.+...+...+...... ..+-+.-+|.+.... ...+. ..+. ..++.+- ....+
T Consensus 117 ~~ea~~~~~~-~~~rVflt~G~~~l~~f~~~~~~-~~~~~Rvlp~~~~~~---~~~~~--~~p~---~~Iia~~GPfs~~ 186 (257)
T COG2099 117 IEEAAEAAKQ-LGRRVFLTTGRQNLAHFVAADAH-SHVLARVLPPPDVLA---KCEDL--GVPP---ARIIAMRGPFSEE 186 (257)
T ss_pred HHHHHHHHhc-cCCcEEEecCccchHHHhcCccc-ceEEEEEcCchHHHH---HHHhc--CCCh---hhEEEecCCcChH
Confidence 3456666777 77777777777776666664431 234445555321111 00000 0010 1111111 23455
Q ss_pred HHHHHHHhhhhccCCCCCeEEEeCCCchh-----hHHHHHHhCCceEEEc
Q 040467 101 HFRKLINGLIDEQNGHKPVCIIADMFFAW-----SAEIAQEYGIFNALFV 145 (387)
Q Consensus 101 ~~~~ll~~~~~~~~~~~pD~vV~D~~~~~-----~~~~a~~lgiP~v~~~ 145 (387)
.-+++++++ +.|+||+-.---. =..+|+++|||+|.+-
T Consensus 187 ~n~all~q~-------~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~ 229 (257)
T COG2099 187 DNKALLEQY-------RIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIE 229 (257)
T ss_pred HHHHHHHHh-------CCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEe
Confidence 667889998 8999998653332 2588999999999984
No 232
>PRK06749 replicative DNA helicase; Provisional
Probab=61.51 E-value=34 Score=32.43 Aligned_cols=44 Identities=18% Similarity=0.159 Sum_probs=36.9
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
=|++-.-|+.|-..-.+.+|...+. .|..|.|++.+-....+..
T Consensus 188 LiiIaarPgmGKTafal~ia~~~a~-~g~~v~~fSlEMs~~ql~~ 231 (428)
T PRK06749 188 FVVLGARPSMGKTAFALNVGLHAAK-SGAAVGLFSLEMSSKQLLK 231 (428)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHh-cCCCEEEEEeeCCHHHHHH
Confidence 3677778999999999999999999 9999999997766555544
No 233
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=61.39 E-value=20 Score=28.55 Aligned_cols=34 Identities=21% Similarity=0.189 Sum_probs=27.3
Q ss_pred eEEEecCCCcCCCHHHHHHHHHHHHhCCCcEEEE
Q 040467 279 VIYVSFGSQNTIAASQMMQLAMALEACGKNFIWV 312 (387)
Q Consensus 279 ~v~vs~GS~~~~~~~~~~~~~~a~~~~~~~~l~~ 312 (387)
.+|+|+||........++..++++.+.+.--+++
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~ 36 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVA 36 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 7999999998888888999999998876433433
No 234
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=61.27 E-value=15 Score=30.26 Aligned_cols=40 Identities=8% Similarity=-0.095 Sum_probs=34.0
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLK 47 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~ 47 (387)
||++--.|+.|=+.-.+.+.++|.+ .|++|+++.++.-..
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~-~g~~V~vI~S~~A~~ 41 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVD-EGAEVTPIVSETVQT 41 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHh-CcCEEEEEEchhHHH
Confidence 6888888888888877899999999 999999998776543
No 235
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=61.04 E-value=36 Score=27.94 Aligned_cols=38 Identities=21% Similarity=0.255 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEecc
Q 040467 20 IPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIP 65 (387)
Q Consensus 20 ~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~ 65 (387)
.-++.+|+.|.+ .|+++ +++....+.+++ .|+.+..+.
T Consensus 11 ~~l~~lAk~L~~-lGf~I--~AT~GTAk~L~e-----~GI~v~~V~ 48 (187)
T cd01421 11 TGLVEFAKELVE-LGVEI--LSTGGTAKFLKE-----AGIPVTDVS 48 (187)
T ss_pred ccHHHHHHHHHH-CCCEE--EEccHHHHHHHH-----cCCeEEEhh
Confidence 447899999999 99998 467788889999 666766654
No 236
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=60.95 E-value=43 Score=26.85 Aligned_cols=30 Identities=20% Similarity=0.280 Sum_probs=26.4
Q ss_pred CCCcccHHHHHHHHHHHHhCCCcEEEEEeCC
Q 040467 13 LMAQGHTIPFLALALHLENTNRYTITFVNTP 43 (387)
Q Consensus 13 ~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~ 43 (387)
-|+.|-..-...||..|++ .|++|.++=..
T Consensus 8 kgG~GKTt~a~~LA~~la~-~g~~vllvD~D 37 (169)
T cd02037 8 KGGVGKSTVAVNLALALAK-LGYKVGLLDAD 37 (169)
T ss_pred CCcCChhHHHHHHHHHHHH-cCCcEEEEeCC
Confidence 3788999999999999999 99999998543
No 237
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=60.62 E-value=12 Score=30.70 Aligned_cols=43 Identities=19% Similarity=0.109 Sum_probs=33.9
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
||++--.|+.|-+.- ..+.++|++ +|++|.++.++.-...+..
T Consensus 1 ~illgvtGsiaa~ka-~~lir~L~~-~g~~V~vv~T~~A~~fv~~ 43 (181)
T TIGR00421 1 RIVVAMTGASGVIYG-IRLLEVLKE-AGVEVHLVISDWAKETIKY 43 (181)
T ss_pred CEEEEEECHHHHHHH-HHHHHHHHH-CCCEEEEEECccHHHHHHH
Confidence 366666677666655 899999999 9999999999887776653
No 238
>PRK05636 replicative DNA helicase; Provisional
Probab=60.40 E-value=29 Score=33.74 Aligned_cols=45 Identities=7% Similarity=-0.012 Sum_probs=34.8
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
-|++..-|+.|-..-.+.+|...+.+.|..|.|++.+-....+..
T Consensus 267 Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~ 311 (505)
T PRK05636 267 MIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVM 311 (505)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHH
Confidence 467788899999999999998876316899999987766554443
No 239
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=60.40 E-value=83 Score=28.39 Aligned_cols=31 Identities=23% Similarity=0.254 Sum_probs=23.6
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeC
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNT 42 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~ 42 (387)
|||+|+..+..+ +...++|.+ +||+|..+.+
T Consensus 1 mkIvf~Gs~~~a-----~~~L~~L~~-~~~~i~~Vvt 31 (313)
T TIGR00460 1 LRIVFFGTPTFS-----LPVLEELRE-DNFEVVGVVT 31 (313)
T ss_pred CEEEEECCCHHH-----HHHHHHHHh-CCCcEEEEEc
Confidence 369999777644 677788999 9999886654
No 240
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=59.82 E-value=41 Score=27.78 Aligned_cols=68 Identities=22% Similarity=0.250 Sum_probs=50.7
Q ss_pred CHH-HHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEeccccCHHHhhCccCcceeeec
Q 040467 291 AAS-QMMQLAMALEACGKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVEILSHKSISAFLSH 369 (387)
Q Consensus 291 ~~~-~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~lL~~~~~~~~v~H 369 (387)
+.+ .-+++.+.+...+..+|+..|... -+.+.|..+.+ .+-+=+ ||++ .=.+
T Consensus 63 ~r~~~d~~l~~~l~~~~~dlvvLAGyMr------------IL~~~fl~~~~--grIlNI-----------HPSL--LP~f 115 (200)
T COG0299 63 SREAFDRALVEALDEYGPDLVVLAGYMR------------ILGPEFLSRFE--GRILNI-----------HPSL--LPAF 115 (200)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcchHH------------HcCHHHHHHhh--cceEec-----------Cccc--ccCC
Confidence 444 444599999999999988887652 36677777665 333333 8886 8889
Q ss_pred cChhHHHHHHHcCCcc
Q 040467 370 CGWNSVLEALSHRVPI 385 (387)
Q Consensus 370 GG~~s~~eal~~GvP~ 385 (387)
+|..+..+|+.+|+..
T Consensus 116 ~G~h~~~~A~~aG~k~ 131 (200)
T COG0299 116 PGLHAHEQALEAGVKV 131 (200)
T ss_pred CCchHHHHHHHcCCCc
Confidence 9999999999999864
No 241
>PRK11823 DNA repair protein RadA; Provisional
Probab=59.19 E-value=25 Score=33.60 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=36.5
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLK 50 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~ 50 (387)
-+++...|+.|-..-++.+|..+++ +|..|.+++.++..+.+.
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~-~g~~vlYvs~Ees~~qi~ 124 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAA-AGGKVLYVSGEESASQIK 124 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEEccccHHHHH
Confidence 4667777899999999999999999 999999999887665553
No 242
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=58.47 E-value=24 Score=26.68 Aligned_cols=35 Identities=14% Similarity=0.213 Sum_probs=32.9
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeC
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNT 42 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~ 42 (387)
||++.+.++-.|-.-..-++.-|+. .|++|.+...
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~-~G~~vi~lG~ 35 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRD-AGFEVIYTGL 35 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHH-CCCEEEECCC
Confidence 5899999999999999999999999 9999999985
No 243
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=57.76 E-value=65 Score=30.58 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=35.9
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
-+++...|+.|-..-.+.+|..++...|+.|.|++.+.....+..
T Consensus 197 l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~ 241 (434)
T TIGR00665 197 LIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAM 241 (434)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHH
Confidence 467777889999999999999887515999999998876655543
No 244
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=57.65 E-value=87 Score=26.37 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=27.8
Q ss_pred EEEEcC-CCcccHHHHHHHHHHHHhCCCcEEEEEeC
Q 040467 8 IVMFPL-MAQGHTIPFLALALHLENTNRYTITFVNT 42 (387)
Q Consensus 8 il~~~~-~~~GH~~P~l~la~~L~~~rGh~Vt~~~~ 42 (387)
|.+.+. ...|-..-.+.|++.|++ +|++|.++-+
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~-~g~~v~~~KP 36 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALRE-AGYSVAGYKP 36 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHH-cCCceEEEee
Confidence 445544 457999999999999999 9999998763
No 245
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=57.47 E-value=68 Score=29.04 Aligned_cols=40 Identities=18% Similarity=0.152 Sum_probs=31.4
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCC-cchhhhhh
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTP-SNLKKLKS 51 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~-~~~~~~~~ 51 (387)
++|.++-.+++| .+||..|++ .||+|++.... +..+.+..
T Consensus 2 ~kI~ViGaGswG-----TALA~~la~-ng~~V~lw~r~~~~~~~i~~ 42 (329)
T COG0240 2 MKIAVIGAGSWG-----TALAKVLAR-NGHEVRLWGRDEEIVAEINE 42 (329)
T ss_pred ceEEEEcCChHH-----HHHHHHHHh-cCCeeEEEecCHHHHHHHHh
Confidence 359999999999 579999999 99999988753 33444444
No 246
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=57.33 E-value=74 Score=29.90 Aligned_cols=40 Identities=18% Similarity=0.331 Sum_probs=35.8
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcch
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNL 46 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~ 46 (387)
..|+|+-..+.|-..-...||..|.. +|..|.+++...++
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~-~GkkVglI~aDt~R 281 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHG-KKKTVGFITTDHSR 281 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHH-cCCcEEEEecCCcc
Confidence 36788888899999999999999999 99999999987765
No 247
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=57.27 E-value=1.3e+02 Score=26.19 Aligned_cols=38 Identities=16% Similarity=0.189 Sum_probs=33.0
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcc
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSN 45 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~ 45 (387)
-+++...|+.|-..-.+.++...++ +|..|.|++.+.-
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~a~-~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQAS-RGNPVLFVTVESP 75 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh-CCCcEEEEEecCC
Confidence 4666777899999999999999999 9999999998753
No 248
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=57.13 E-value=18 Score=31.62 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=23.5
Q ss_pred eeEEEecCCCcCCCHH-HHHHHHHHHHh--CCCcEEEEEcC
Q 040467 278 SVIYVSFGSQNTIAAS-QMMQLAMALEA--CGKNFIWVVKP 315 (387)
Q Consensus 278 ~~v~vs~GS~~~~~~~-~~~~~~~a~~~--~~~~~l~~~~~ 315 (387)
.+|++||||.....-+ -+..+.+.+++ +++.+-|++.+
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS 42 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTS 42 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchH
Confidence 4889999998765444 56666666666 67888888755
No 249
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=57.13 E-value=36 Score=32.59 Aligned_cols=43 Identities=21% Similarity=0.311 Sum_probs=36.2
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLK 50 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~ 50 (387)
-+++.--|+.|-..-++.++..+.+ +|..|.+++.++..+.+.
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~-~g~kvlYvs~EEs~~qi~ 138 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAK-NQMKVLYVSGEESLQQIK 138 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh-cCCcEEEEECcCCHHHHH
Confidence 3667777899999999999999999 999999999887665554
No 250
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=56.52 E-value=16 Score=28.06 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=28.5
Q ss_pred cHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcC
Q 040467 18 HTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSL 53 (387)
Q Consensus 18 H~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~ 53 (387)
.+--.+-++..|++ +||+|++++++.....++-..
T Consensus 12 q~p~alYl~~~Lk~-~G~~v~Va~npAA~kLl~vaD 46 (139)
T PF09001_consen 12 QTPSALYLSYKLKK-KGFEVVVAGNPAALKLLEVAD 46 (139)
T ss_dssp HHHHHHHHHHHHHC-TTEEEEEEE-HHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHh-cCCeEEEecCHHHHhHhhhcC
Confidence 44557889999999 999999999998888887743
No 251
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=56.38 E-value=30 Score=31.87 Aligned_cols=87 Identities=21% Similarity=0.226 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCc-----hhHHHHhccCCCcEEeccccCHHH---hhCcc
Q 040467 290 IAASQMMQLAMALEACGKNFIWVVKPPLGFDMNSEFRANEWLP-----EGFEERIKDSGQGLVVQKWAPQVE---ILSHK 361 (387)
Q Consensus 290 ~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~pq~~---lL~~~ 361 (387)
....-+..+++++++.+.++.+.+..+. ...... ..+. .+- ....+.-.+.+.+|+||.+ +|-.+
T Consensus 192 Ye~~~l~~ll~~~~~~~~pv~llvp~g~---~~~~~~--~~~~~~~~~~g~--~~~~g~l~l~~lPF~~Q~~yD~LLw~c 264 (374)
T PF10093_consen 192 YENAALASLLDAWAASPKPVHLLVPEGR---ALNSLA--AWLGDALLQAGD--SWQRGNLTLHVLPFVPQDDYDRLLWAC 264 (374)
T ss_pred CCchHHHHHHHHHhcCCCCeEEEecCCc---cHHHHH--HHhccccccCcc--ccccCCeEEEECCCCCHHHHHHHHHhC
Confidence 3445577788888877777766665442 000000 0000 000 0011133577889999754 88887
Q ss_pred CcceeeeccChhHHHHHHHcCCccc
Q 040467 362 SISAFLSHCGWNSVLEALSHRVPII 386 (387)
Q Consensus 362 ~~~~~v~HGG~~s~~eal~~GvP~l 386 (387)
++ .|| =|==|+.-|..+|+|.|
T Consensus 265 D~-NfV--RGEDSfVRAqwAgkPFv 286 (374)
T PF10093_consen 265 DF-NFV--RGEDSFVRAQWAGKPFV 286 (374)
T ss_pred cc-ceE--ecchHHHHHHHhCCCce
Confidence 75 344 36679999999999986
No 252
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=56.14 E-value=1.2e+02 Score=26.18 Aligned_cols=30 Identities=20% Similarity=0.153 Sum_probs=21.8
Q ss_pred CeEEE-eCCCch-hhHHHHHHhCCceEEEcch
Q 040467 118 PVCII-ADMFFA-WSAEIAQEYGIFNALFVGG 147 (387)
Q Consensus 118 pD~vV-~D~~~~-~~~~~a~~lgiP~v~~~~~ 147 (387)
||+++ .|+..- -+..=|.++|||+|.+.=+
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDT 188 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDT 188 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecC
Confidence 88655 676555 5556688899999998543
No 253
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=56.14 E-value=1.5e+02 Score=26.68 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=28.0
Q ss_pred CHHHhhCccCcceeeeccChhHHHHHHHcCCccc
Q 040467 353 PQVEILSHKSISAFLSHCGWNSVLEALSHRVPII 386 (387)
Q Consensus 353 pq~~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l 386 (387)
|+...|..++. .+||=--.+=+.||++.|+|+.
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~ 253 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVY 253 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEE
Confidence 57888988775 7788888899999999999974
No 254
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=55.96 E-value=94 Score=29.39 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=22.0
Q ss_pred CCeEEEeCCCchhhHHHHHHhCCceEEEc
Q 040467 117 KPVCIIADMFFAWSAEIAQEYGIFNALFV 145 (387)
Q Consensus 117 ~pD~vV~D~~~~~~~~~a~~lgiP~v~~~ 145 (387)
+||++|.. ..+..+|+++|||.+.+.
T Consensus 350 ~pDl~Ig~---s~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 350 RPDLAIGT---TPLVQYAKEKGIPALYYT 375 (416)
T ss_pred CCCEEEeC---ChhhHHHHHhCCCEEEec
Confidence 89999987 347789999999998864
No 255
>PLN02240 UDP-glucose 4-epimerase
Probab=55.68 E-value=19 Score=32.90 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=26.0
Q ss_pred CCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEe
Q 040467 1 MAQRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVN 41 (387)
Q Consensus 1 ~~~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~ 41 (387)
|||+..+|+++ ++.|.+ -..|++.|.+ +||+|+.+.
T Consensus 1 ~~~~~~~vlIt--GatG~i--G~~l~~~L~~-~g~~V~~~~ 36 (352)
T PLN02240 1 MSLMGRTILVT--GGAGYI--GSHTVLQLLL-AGYKVVVID 36 (352)
T ss_pred CCCCCCEEEEE--CCCChH--HHHHHHHHHH-CCCEEEEEe
Confidence 56666677764 445555 3467899999 999999885
No 256
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=55.41 E-value=1.2e+02 Score=26.40 Aligned_cols=104 Identities=18% Similarity=0.112 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhCCC-cEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCCCCchhHHHHHH-hhh
Q 040467 21 PFLALALHLENTNR-YTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFHLFPNFFEST-LSF 98 (387)
Q Consensus 21 P~l~la~~L~~~rG-h~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 98 (387)
-+-..++.|.+ .+ .+|-+.+....-+.+.+.......+-+.-+|.+....+++.. .+..+. ...
T Consensus 117 ~~~eA~~~l~~-~~~~~iflttGsk~L~~f~~~~~~~~r~~~RvLp~~~~~~g~~~~-------------~iia~~GPfs 182 (249)
T PF02571_consen 117 SYEEAAELLKE-LGGGRIFLTTGSKNLPPFVPAPLPGERLFARVLPTPESALGFPPK-------------NIIAMQGPFS 182 (249)
T ss_pred CHHHHHHHHhh-cCCCCEEEeCchhhHHHHhhcccCCCEEEEEECCCccccCCCChh-------------hEEEEeCCCC
Confidence 34566777777 76 777777776666666441111144555556654221111111 111111 123
Q ss_pred hHHHHHHHHhhhhccCCCCCeEEEeCCCchhh----HHHHHHhCCceEEEc
Q 040467 99 KPHFRKLINGLIDEQNGHKPVCIIADMFFAWS----AEIAQEYGIFNALFV 145 (387)
Q Consensus 99 ~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~----~~~a~~lgiP~v~~~ 145 (387)
.+.-++++++. +.|+||+=.---.+ +.+|+++|||++.+-
T Consensus 183 ~e~n~al~~~~-------~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~ 226 (249)
T PF02571_consen 183 KELNRALFRQY-------GIDVLVTKESGGSGFDEKIEAARELGIPVIVIK 226 (249)
T ss_pred HHHHHHHHHHc-------CCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEe
Confidence 44567788888 89999975532222 478999999999983
No 257
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=55.40 E-value=1.5e+02 Score=28.90 Aligned_cols=45 Identities=13% Similarity=0.129 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHhhhhccCCCCCeEEE----eCCCchhhHHHHHHhCCceEEEcchh
Q 040467 97 SFKPHFRKLINGLIDEQNGHKPVCII----ADMFFAWSAEIAQEYGIFNALFVGGG 148 (387)
Q Consensus 97 ~~~~~~~~ll~~~~~~~~~~~pD~vV----~D~~~~~~~~~a~~lgiP~v~~~~~~ 148 (387)
.+...++..++.. .+|.+| +|=..++.+..|.++++|.|.++-.+
T Consensus 76 lIAdsiE~~~~~~-------~~Dg~v~l~~CDK~~PG~lMaaarlniP~i~v~gGp 124 (535)
T TIGR00110 76 IIADSVETMVNAH-------RFDGLVCIPSCDKITPGMLMAAARLNIPSIFVTGGP 124 (535)
T ss_pred HHHHHHHHHHhcC-------CcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCCC
Confidence 3455566666655 788776 78888899999999999999986544
No 258
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=55.10 E-value=13 Score=30.54 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=25.2
Q ss_pred cEEEEEcCCCcccHHH------------HHHHHHHHHhCCCcEEEEEeCCc
Q 040467 6 ENIVMFPLMAQGHTIP------------FLALALHLENTNRYTITFVNTPS 44 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P------------~l~la~~L~~~rGh~Vt~~~~~~ 44 (387)
.+||+...|++=.+.| -..||+++.+ ||++||++..+.
T Consensus 4 k~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~-~Ga~V~li~g~~ 53 (185)
T PF04127_consen 4 KKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAAR-RGAEVTLIHGPS 53 (185)
T ss_dssp -EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHH-TT-EEEEEE-TT
T ss_pred CEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHH-CCCEEEEEecCc
Confidence 3566665555555444 3689999999 999999999774
No 259
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=54.83 E-value=19 Score=32.55 Aligned_cols=46 Identities=7% Similarity=0.035 Sum_probs=40.4
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhC-CCcEEEEEeCCcchhhhhh
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENT-NRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~-rGh~Vt~~~~~~~~~~~~~ 51 (387)
||||++-....|++.=..++.+.|+++ .+.+||+++.+.+++.++.
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~ 47 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSW 47 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhc
Confidence 379999999999999999999999995 5999999998877766654
No 260
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=54.79 E-value=18 Score=29.71 Aligned_cols=43 Identities=16% Similarity=0.087 Sum_probs=36.0
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCC-CcEEEEEeCCcchhhhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTN-RYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~r-Gh~Vt~~~~~~~~~~~~~ 51 (387)
||++--.|+.| ..=...++++|.+ + ||+|.++.++.-...+..
T Consensus 3 ~IllgVTGsia-a~ka~~l~~~L~k-~~g~~V~vv~T~~A~~fv~~ 46 (185)
T PRK06029 3 RLIVGISGASG-AIYGVRLLQVLRD-VGEIETHLVISQAARQTLAH 46 (185)
T ss_pred EEEEEEECHHH-HHHHHHHHHHHHh-hcCCeEEEEECHHHHHHHHH
Confidence 68888888877 5558999999998 6 999999999887777765
No 261
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=54.56 E-value=1.4e+02 Score=25.81 Aligned_cols=102 Identities=11% Similarity=-0.035 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhCCC-cEEEEEeCCc------chhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCCCCchhHH
Q 040467 19 TIPFLALALHLENTNR-YTITFVNTPS------NLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFHLFPNF 91 (387)
Q Consensus 19 ~~P~l~la~~L~~~rG-h~Vt~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (387)
++|..++..+|++ .| .+|.+++|.. .++.+++ .||+...+.. -+.....+ ...
T Consensus 105 tt~~~A~~~AL~a-lg~~RIalvTPY~~~v~~~~~~~l~~-----~G~eV~~~~~----~~~~~~~~-ia~--------- 164 (239)
T TIGR02990 105 VTPSSAAVDGLAA-LGVRRISLLTPYTPETSRPMAQYFAV-----RGFEIVNFTC----LGLTDDRE-MAR--------- 164 (239)
T ss_pred eCHHHHHHHHHHH-cCCCEEEEECCCcHHHHHHHHHHHHh-----CCcEEeeeec----cCCCCCce-eee---------
Confidence 4678888889998 78 7788888633 2334555 6667665531 11111111 100
Q ss_pred HHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHH----HhCCceEEEcchhH
Q 040467 92 FESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQ----EYGIFNALFVGGGS 149 (387)
Q Consensus 92 ~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~----~lgiP~v~~~~~~~ 149 (387)
.-.+.+.+.+++.... .+|+|+.--.....+.+.+ ++|+|++.......
T Consensus 165 -----i~p~~i~~~~~~~~~~----~aDAifisCTnLrt~~vi~~lE~~lGkPVlsSNqat~ 217 (239)
T TIGR02990 165 -----ISPDCIVEAALAAFDP----DADALFLSCTALRAATCAQRIEQAIGKPVVTSNQATA 217 (239)
T ss_pred -----cCHHHHHHHHHHhcCC----CCCEEEEeCCCchhHHHHHHHHHHHCCCEEEHHHHHH
Confidence 1112223333333222 5798887766665554443 47999877544333
No 262
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=54.42 E-value=42 Score=26.97 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=27.9
Q ss_pred hhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhhHHH--HH--H-h-CCceEEEc
Q 040467 96 LSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEI--AQ--E-Y-GIFNALFV 145 (387)
Q Consensus 96 ~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~--a~--~-l-giP~v~~~ 145 (387)
....+.+.+++++. +||+||+...+.....+ .+ . + ++|.+.+.
T Consensus 75 ~~~~~~l~~~l~~~-------~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvv 123 (169)
T PF06925_consen 75 RLFARRLIRLLREF-------QPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVV 123 (169)
T ss_pred HHHHHHHHHHHhhc-------CCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEE
Confidence 34455677788877 99999999877544412 12 2 3 47877654
No 263
>PRK05748 replicative DNA helicase; Provisional
Probab=54.27 E-value=77 Score=30.31 Aligned_cols=45 Identities=13% Similarity=0.113 Sum_probs=36.2
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
-+++-.-|+.|-..-.+.+|...+.+.|+.|.|++.+-....+..
T Consensus 205 livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~ 249 (448)
T PRK05748 205 LIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVM 249 (448)
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHH
Confidence 477778899999999999999887416999999998776665544
No 264
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=53.99 E-value=1.8e+02 Score=26.70 Aligned_cols=60 Identities=15% Similarity=0.196 Sum_probs=47.8
Q ss_pred CCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCC---cchhhhhhcCCCCCCeeEEeccCC
Q 040467 2 AQRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTP---SNLKKLKSSLPQNSSIHLREIPFD 67 (387)
Q Consensus 2 ~~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~ 67 (387)
+.+|.|+.++..|-.||---|.-=|..|++ .|.+|.+++-- ...+.+.. +.|+++.++..
T Consensus 9 ~~~k~ra~vvVLGDvGRSPRMqYHA~Sla~-~gf~VdliGy~~s~p~e~l~~h-----prI~ih~m~~l 71 (444)
T KOG2941|consen 9 KSKKKRAIVVVLGDVGRSPRMQYHALSLAK-LGFQVDLIGYVESIPLEELLNH-----PRIRIHGMPNL 71 (444)
T ss_pred ccccceEEEEEecccCCChHHHHHHHHHHH-cCCeEEEEEecCCCChHHHhcC-----CceEEEeCCCC
Confidence 345789999999999999999999999999 99999999732 23333333 89999988743
No 265
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.35 E-value=44 Score=30.91 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=35.3
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKK 48 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~ 48 (387)
=|+|+-.-+.|-...+-.+|..+.+ +|+.+-++|...|+.-
T Consensus 103 VimfVGLqG~GKTTtc~KlA~y~kk-kG~K~~LvcaDTFRag 143 (483)
T KOG0780|consen 103 VIMFVGLQGSGKTTTCTKLAYYYKK-KGYKVALVCADTFRAG 143 (483)
T ss_pred EEEEEeccCCCcceeHHHHHHHHHh-cCCceeEEeecccccc
Confidence 3566666788999999999999999 9999999998877663
No 266
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=53.31 E-value=1.2e+02 Score=25.28 Aligned_cols=50 Identities=14% Similarity=0.112 Sum_probs=29.4
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCC--CcEEEEEeCC-cc---hhhhhhcCCCCCCeeEEecc
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTN--RYTITFVNTP-SN---LKKLKSSLPQNSSIHLREIP 65 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~r--Gh~Vt~~~~~-~~---~~~~~~~~~~~~~i~~~~~~ 65 (387)
||+++.++.-+= +.++.+++.+ . +++|.++.+. .. .+...+ .++.+..++
T Consensus 3 ki~vl~sg~gs~---~~~ll~~~~~-~~~~~~I~~vvs~~~~~~~~~~a~~-----~gIp~~~~~ 58 (200)
T PRK05647 3 RIVVLASGNGSN---LQAIIDACAA-GQLPAEIVAVISDRPDAYGLERAEA-----AGIPTFVLD 58 (200)
T ss_pred eEEEEEcCCChh---HHHHHHHHHc-CCCCcEEEEEEecCccchHHHHHHH-----cCCCEEEEC
Confidence 599999877443 3456666776 4 4778875433 22 223333 566776554
No 267
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=53.16 E-value=24 Score=31.49 Aligned_cols=40 Identities=23% Similarity=0.233 Sum_probs=30.2
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
|||+++-.++.| ..+|..|++ .||+|+++..++..+.+.+
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~-~g~~V~~~~r~~~~~~~~~ 40 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLE-AGRDVTFLVRPKRAKALRE 40 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHH-CCCceEEEecHHHHHHHHh
Confidence 368899888876 467899999 9999999987444444444
No 268
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=53.12 E-value=22 Score=32.01 Aligned_cols=43 Identities=26% Similarity=0.173 Sum_probs=34.4
Q ss_pred EEEEEcC-CCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhh
Q 040467 7 NIVMFPL-MAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLK 50 (387)
Q Consensus 7 ~il~~~~-~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~ 50 (387)
|++|+.. |+.|-..-..++|..+++ +|++|-++++...++.-.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~-~G~rtLlvS~Dpa~~L~d 45 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALAR-RGKRTLLVSTDPAHSLSD 45 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH-TTS-EEEEESSTTTHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhh-CCCCeeEeecCCCccHHH
Confidence 4666655 788999999999999999 999999999877665433
No 269
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=52.82 E-value=20 Score=29.29 Aligned_cols=42 Identities=14% Similarity=0.130 Sum_probs=32.6
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLK 50 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~ 50 (387)
||++.-.++.| ..-...+.++|++ +|++|.++.++.-...+.
T Consensus 2 ~I~lgvtGs~~-a~~~~~ll~~L~~-~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 2 KILLAVTGSIA-AYKAADLTSQLTK-LGYDVTVLMTQAATQFIT 43 (177)
T ss_pred EEEEEEcCHHH-HHHHHHHHHHHHH-CCCEEEEEEChHHHhhcc
Confidence 57777777654 4456699999999 999999998877665554
No 270
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=52.42 E-value=35 Score=28.82 Aligned_cols=39 Identities=23% Similarity=0.246 Sum_probs=35.6
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCC
Q 040467 4 RKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTP 43 (387)
Q Consensus 4 ~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~ 43 (387)
.+.+|++.+.++-.|-....=++..|.+ +|++|+++...
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~-~G~~Vi~LG~~ 125 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSN-NGYEVIDLGVM 125 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHh-CCCEEEECCCC
Confidence 3579999999999999999999999999 99999999853
No 271
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=52.38 E-value=48 Score=29.34 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=33.2
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 5 KENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 5 ~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
.++|+++-.|..|.. +|+.|++ +||.|.++.-....+....
T Consensus 3 ~~~v~IvG~GliG~s-----~a~~l~~-~g~~v~i~g~d~~~~~~~~ 43 (279)
T COG0287 3 SMKVGIVGLGLMGGS-----LARALKE-AGLVVRIIGRDRSAATLKA 43 (279)
T ss_pred CcEEEEECCchHHHH-----HHHHHHH-cCCeEEEEeecCcHHHHHH
Confidence 347999999988864 7999999 9999999987776655555
No 272
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=52.25 E-value=34 Score=25.36 Aligned_cols=71 Identities=14% Similarity=0.099 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEec-------cccCHHHhhCccC-
Q 040467 291 AASQMMQLAMALEACGKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQ-------KWAPQVEILSHKS- 362 (387)
Q Consensus 291 ~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-------~~~pq~~lL~~~~- 362 (387)
+.+....+++++++.|.+.+.....+. ........ .+.++.. .|+..+.|+.-+.
T Consensus 10 rGeia~r~~ra~r~~Gi~tv~v~s~~d------------~~s~~~~~-----ad~~~~~~~~~~~~~yl~~e~I~~ia~~ 72 (110)
T PF00289_consen 10 RGEIAVRIIRALRELGIETVAVNSNPD------------TVSTHVDM-----ADEAYFEPPGPSPESYLNIEAIIDIARK 72 (110)
T ss_dssp -HHHHHHHHHHHHHTTSEEEEEEEGGG------------TTGHHHHH-----SSEEEEEESSSGGGTTTSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCcceeccCchh------------cccccccc-----cccceecCcchhhhhhccHHHHhhHhhh
Confidence 445577799999999999998886552 12122111 3344443 4777777665310
Q ss_pred cceeeeccChhHHHHH
Q 040467 363 ISAFLSHCGWNSVLEA 378 (387)
Q Consensus 363 ~~~~v~HGG~~s~~ea 378 (387)
-++...|+|+|-..|.
T Consensus 73 ~g~~~i~pGyg~lse~ 88 (110)
T PF00289_consen 73 EGADAIHPGYGFLSEN 88 (110)
T ss_dssp TTESEEESTSSTTTTH
T ss_pred hcCcccccccchhHHH
Confidence 1568899999977665
No 273
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=52.16 E-value=1.8e+02 Score=27.74 Aligned_cols=35 Identities=23% Similarity=0.237 Sum_probs=27.7
Q ss_pred HHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHhCCceEEEc
Q 040467 101 HFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFV 145 (387)
Q Consensus 101 ~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~lgiP~v~~~ 145 (387)
.+.+.+++. +||++|.... ...+|+++|+|++.+.
T Consensus 368 e~~~~i~~~-------~pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 368 HLRSLLFTE-------PVDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred HHHHHHhhc-------CCCEEEECcc---HHHHHHHhCCCEEEee
Confidence 455566666 8999999874 6788999999998764
No 274
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=52.15 E-value=1.2e+02 Score=28.84 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=22.0
Q ss_pred CCeEEEeCCCchhhHHHHHHhCCceEEEc
Q 040467 117 KPVCIIADMFFAWSAEIAQEYGIFNALFV 145 (387)
Q Consensus 117 ~pD~vV~D~~~~~~~~~a~~lgiP~v~~~ 145 (387)
+||++|... .+..+|+++|||.+.+-
T Consensus 355 ~pDllig~s---~~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 355 EPDLAIGTT---PLVQFAKEHGIPALYFT 380 (422)
T ss_pred CCCEEEcCC---cchHHHHHcCCCEEEec
Confidence 899999884 36678999999999863
No 275
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=52.14 E-value=1.8e+02 Score=28.52 Aligned_cols=45 Identities=11% Similarity=0.071 Sum_probs=34.0
Q ss_pred hhHHHHHHHHhhhhccCCCCCeEEE----eCCCchhhHHHHHHhCCceEEEcchhH
Q 040467 98 FKPHFRKLINGLIDEQNGHKPVCII----ADMFFAWSAEIAQEYGIFNALFVGGGS 149 (387)
Q Consensus 98 ~~~~~~~ll~~~~~~~~~~~pD~vV----~D~~~~~~~~~a~~lgiP~v~~~~~~~ 149 (387)
+...++..++.. .+|.+| +|=..++.+..+.+++||.|.++-.+.
T Consensus 108 IAds~e~~~~~~-------~~Da~V~i~~CDKi~PG~lmaa~r~niPaIfv~gGpM 156 (575)
T COG0129 108 IADSVEEVLSAH-------PFDGVVLIGGCDKITPGMLMAAARLNIPAIFVSGGPM 156 (575)
T ss_pred HHHHHHHHHhcc-------CcceEEEecCCCCccHHHHHHHHhcCCCEEEecCCcC
Confidence 444556666665 688776 788888888889999999999875543
No 276
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=51.90 E-value=1.3e+02 Score=26.80 Aligned_cols=96 Identities=15% Similarity=0.073 Sum_probs=54.6
Q ss_pred ChhhhccccCCCCCCeeEEEecCCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccC
Q 040467 263 STELCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDS 342 (387)
Q Consensus 263 ~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (387)
...++..+..+.+-+++-.-........+...+..+.++++++|..+++-+|... .+.+..
T Consensus 114 a~~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~-------------~~~~~~------ 174 (293)
T COG2159 114 AAEELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGP-------------GGAGLE------ 174 (293)
T ss_pred HHHHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCC-------------CCcccc------
Confidence 3446666665543233333333333445566688999999999999999666542 100000
Q ss_pred CCcEEeccccCHHHhhCccCcceeeeccC--hhHHHHHH
Q 040467 343 GQGLVVQKWAPQVEILSHKSISAFLSHCG--WNSVLEAL 379 (387)
Q Consensus 343 ~~~v~~~~~~pq~~lL~~~~~~~~v~HGG--~~s~~eal 379 (387)
.. ...+..=......+|+++-++.|+| ..=..||+
T Consensus 175 -~~-~~~p~~~~~va~~fP~l~IVl~H~G~~~p~~~~a~ 211 (293)
T COG2159 175 -KG-HSDPLYLDDVARKFPELKIVLGHMGEDYPWELEAI 211 (293)
T ss_pred -cC-CCCchHHHHHHHHCCCCcEEEEecCCCCchhHHHH
Confidence 00 0111111334455789999999999 65555554
No 277
>PRK08006 replicative DNA helicase; Provisional
Probab=51.49 E-value=1.2e+02 Score=29.35 Aligned_cols=45 Identities=9% Similarity=-0.003 Sum_probs=35.4
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
=|++-.-|+.|-..-.+.+|...+.+.|+.|.|++.+-....+..
T Consensus 226 LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~~ 270 (471)
T PRK08006 226 LIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMM 270 (471)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHH
Confidence 467777899999999999999887416999999997765554443
No 278
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=51.01 E-value=2.2e+02 Score=29.09 Aligned_cols=35 Identities=26% Similarity=0.272 Sum_probs=29.9
Q ss_pred EEEEEcCC-CcccHHHHHHHHHHHHhCCCcEEEEEeC
Q 040467 7 NIVMFPLM-AQGHTIPFLALALHLENTNRYTITFVNT 42 (387)
Q Consensus 7 ~il~~~~~-~~GH~~P~l~la~~L~~~rGh~Vt~~~~ 42 (387)
.|.+.+.. ..|-..-.+.|++.|.+ +|.+|.++-|
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~-~G~~Vg~fKP 39 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALER-KGVKVGFFKP 39 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEeCC
Confidence 47777565 57999999999999999 9999999974
No 279
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=51.00 E-value=36 Score=25.47 Aligned_cols=36 Identities=8% Similarity=0.182 Sum_probs=27.7
Q ss_pred cEEEEEcCCCcccHHHHH---HHHHHHHhCCCcEEEEEeC
Q 040467 6 ENIVMFPLMAQGHTIPFL---ALALHLENTNRYTITFVNT 42 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l---~la~~L~~~rGh~Vt~~~~ 42 (387)
++|++++....|-...++ .|.++-.+ +||++.+=+.
T Consensus 3 mkivaVtacp~GiAht~lAAeaL~kAA~~-~G~~i~VE~q 41 (114)
T PRK10427 3 AYLVAVTACVSGVAHTYMAAERLEKLCQL-EKWGVKIETQ 41 (114)
T ss_pred ceEEEEeeCCCcHHHHHHHHHHHHHHHHH-CCCeEEEEec
Confidence 359999998888888876 45566666 9999997764
No 280
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=50.15 E-value=35 Score=30.97 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=31.4
Q ss_pred hhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhhH----------HHHHHhCCceEE
Q 040467 96 LSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSA----------EIAQEYGIFNAL 143 (387)
Q Consensus 96 ~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~----------~~a~~lgiP~v~ 143 (387)
+.....+.+++++. +||++|+-+.+.++. .+.++++||.+.
T Consensus 66 eea~~~i~~mv~~~-------~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vt 116 (349)
T PF07355_consen 66 EEALKKILEMVKKL-------KPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVT 116 (349)
T ss_pred HHHHHHHHHHHHhc-------CCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEE
Confidence 55566677778888 999999998876442 456689999986
No 281
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=50.10 E-value=1.6e+02 Score=26.75 Aligned_cols=40 Identities=13% Similarity=0.048 Sum_probs=34.4
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcch
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNL 46 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~ 46 (387)
.-|+|+..++.|-..-+..||..|+. +|++|.++....++
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l~~-~g~~V~Li~~D~~r 154 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKYKA-QGKKVLLAAGDTFR 154 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHh-cCCeEEEEecCccc
Confidence 35677777799999999999999999 99999999876654
No 282
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=49.95 E-value=16 Score=29.94 Aligned_cols=31 Identities=13% Similarity=0.085 Sum_probs=21.5
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeC
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNT 42 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~ 42 (387)
+|.++. +.|++- -.|+++... |||+||-++-
T Consensus 2 KIaiIg--AsG~~G--s~i~~EA~~-RGHeVTAivR 32 (211)
T COG2910 2 KIAIIG--ASGKAG--SRILKEALK-RGHEVTAIVR 32 (211)
T ss_pred eEEEEe--cCchhH--HHHHHHHHh-CCCeeEEEEe
Confidence 355543 334332 368899999 9999999974
No 283
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=49.46 E-value=63 Score=30.40 Aligned_cols=43 Identities=21% Similarity=0.161 Sum_probs=36.9
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhh
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKL 49 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~ 49 (387)
.-|+++-.=+.|-..-.-.||+.|.+ +|+.|-+++..-+++..
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~RpAA 143 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRPAA 143 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHH-cCCceEEEecccCChHH
Confidence 34677777788999999999999999 99999999988877644
No 284
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=49.34 E-value=1.1e+02 Score=27.47 Aligned_cols=94 Identities=11% Similarity=-0.048 Sum_probs=54.7
Q ss_pred CeeEE-EecCCCc--CCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEeccc--
Q 040467 277 NSVIY-VSFGSQN--TIAASQMMQLAMALEACGKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKW-- 351 (387)
Q Consensus 277 ~~~v~-vs~GS~~--~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-- 351 (387)
++.|. +-.||.. ..+.+.+.++++.+.+.+.++++..|++. +. ..-+.+.+. ..++.+.+-
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~------e~----~~~~~i~~~----~~~~~l~g~~s 243 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEH------EE----QRAKRLAEG----FPYVEVLPKLS 243 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHH------HH----HHHHHHHcc----CCcceecCCCC
Confidence 34444 4444443 36788899999998777888776555442 00 011112111 122323333
Q ss_pred cC-HHHhhCccCcceeeeccChhHHHHHHHcCCcccC
Q 040467 352 AP-QVEILSHKSISAFLSHCGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 352 ~p-q~~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l~ 387 (387)
+. -.+++.++++ ||+.- -|.++=|.+.|+|+|+
T Consensus 244 L~elaali~~a~l--~I~nD-SGp~HlA~A~g~p~va 277 (322)
T PRK10964 244 LEQVARVLAGAKA--VVSVD-TGLSHLTAALDRPNIT 277 (322)
T ss_pred HHHHHHHHHhCCE--EEecC-CcHHHHHHHhCCCEEE
Confidence 22 3448888664 88765 4588999999999874
No 285
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=49.03 E-value=47 Score=26.68 Aligned_cols=30 Identities=23% Similarity=0.352 Sum_probs=23.1
Q ss_pred CCeeEEEecCCCcCCCHHHHHHHHHHHHhC
Q 040467 276 CNSVIYVSFGSQNTIAASQMMQLAMALEAC 305 (387)
Q Consensus 276 ~~~~v~vs~GS~~~~~~~~~~~~~~a~~~~ 305 (387)
.+..+|+++||......+.++..++.+.+.
T Consensus 6 ~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~ 35 (163)
T PRK14092 6 ASALAYVGLGANLGDAAATLRSVLAELAAA 35 (163)
T ss_pred cCCEEEEEecCchHhHHHHHHHHHHHHHhC
Confidence 355899999999866677777777777664
No 286
>PRK08818 prephenate dehydrogenase; Provisional
Probab=48.88 E-value=1.8e+02 Score=26.98 Aligned_cols=34 Identities=15% Similarity=0.042 Sum_probs=25.5
Q ss_pred CCccEEEEEcC-CCcccHHHHHHHHHHHHhCC-CcEEEEEeC
Q 040467 3 QRKENIVMFPL-MAQGHTIPFLALALHLENTN-RYTITFVNT 42 (387)
Q Consensus 3 ~~~~~il~~~~-~~~GH~~P~l~la~~L~~~r-Gh~Vt~~~~ 42 (387)
-.+++|+|+-. |..|- -+|+.|++ + |++|+-+-.
T Consensus 2 ~~~~~I~IIGl~GliGg-----slA~alk~-~~~~~V~g~D~ 37 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGR-----WLARFLRT-RMQLEVIGHDP 37 (370)
T ss_pred CCCCEEEEECCCCHHHH-----HHHHHHHh-cCCCEEEEEcC
Confidence 34678999998 87775 47899997 5 888876643
No 287
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=48.83 E-value=2e+02 Score=25.66 Aligned_cols=38 Identities=18% Similarity=0.046 Sum_probs=29.5
Q ss_pred CccEEEEEcCCCccc----HHHHHHHHHHHHhCCCcEEEEEeC
Q 040467 4 RKENIVMFPLMAQGH----TIPFLALALHLENTNRYTITFVNT 42 (387)
Q Consensus 4 ~~~~il~~~~~~~GH----~~P~l~la~~L~~~rGh~Vt~~~~ 42 (387)
+|+||+++..+..+- +....+++++|.+ .||+|.++..
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~-~g~~~~~~~~ 43 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLIS-QGYDAVGVDA 43 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHH-cCCEEEEEcC
Confidence 577999998875442 3556788899999 9999988853
No 288
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=48.62 E-value=1.6e+02 Score=24.53 Aligned_cols=36 Identities=14% Similarity=0.149 Sum_probs=29.3
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCc
Q 040467 8 IVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPS 44 (387)
Q Consensus 8 il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~ 44 (387)
.+++.....|-..-+|.-++.... +|-.|.++++.-
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~-~g~~v~vfkp~i 42 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKE-AGMKVLVFKPAI 42 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHH-cCCeEEEEeccc
Confidence 344444566999999999999999 999999998654
No 289
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=48.57 E-value=33 Score=31.72 Aligned_cols=36 Identities=19% Similarity=0.077 Sum_probs=26.9
Q ss_pred CCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEe
Q 040467 1 MAQRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVN 41 (387)
Q Consensus 1 ~~~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~ 41 (387)
||.++++|+++ ++.|. -=.+|++.|.+ +||+|+.+.
T Consensus 17 ~~~~~~~IlVt--GgtGf--IG~~l~~~L~~-~G~~V~~v~ 52 (370)
T PLN02695 17 WPSEKLRICIT--GAGGF--IASHIARRLKA-EGHYIIASD 52 (370)
T ss_pred CCCCCCEEEEE--CCccH--HHHHHHHHHHh-CCCEEEEEE
Confidence 35567888877 44444 34678999999 999999886
No 290
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.56 E-value=59 Score=28.66 Aligned_cols=31 Identities=13% Similarity=0.068 Sum_probs=26.5
Q ss_pred CCcccHHHHHHHHHHHHhCCCcEEEEEeCCc
Q 040467 14 MAQGHTIPFLALALHLENTNRYTITFVNTPS 44 (387)
Q Consensus 14 ~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~ 44 (387)
--+|++-...+||+.|++-.||+|.+-+.+.
T Consensus 12 DNyGDIGV~wRLARql~re~G~~VrLWvDd~ 42 (370)
T COG4394 12 DNYGDIGVAWRLARQLKREHGWQVRLWVDDK 42 (370)
T ss_pred cccchhHHHHHHHHHHHHHhCceeeeecCCH
Confidence 4579999999999999966999999987543
No 291
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=48.14 E-value=22 Score=26.58 Aligned_cols=32 Identities=6% Similarity=-0.017 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 19 TIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 19 ~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
+.|++.|.-...- |||++|++-|.-+.+.+..
T Consensus 9 Vk~L~eIll~Fil-rGHKT~vyLP~yY~~~~~~ 40 (122)
T PF14626_consen 9 VKALVEILLHFIL-RGHKTVVYLPKYYKNYVDD 40 (122)
T ss_pred HHHHHHHHHHHHh-ccCeeEEEChHHHhccccc
Confidence 5788888889999 9999999998877776665
No 292
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=48.05 E-value=1.2e+02 Score=29.49 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=25.0
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhC-CCcEEEEEeC
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENT-NRYTITFVNT 42 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~-rGh~Vt~~~~ 42 (387)
|+||++..+.+.| +|+++|++. +|++|.++-.
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g 33 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSS 33 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEEC
Confidence 4699999999888 578888882 3888887743
No 293
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=47.96 E-value=26 Score=31.20 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=29.8
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeC-Ccchhhhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNT-PSNLKKLKS 51 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~-~~~~~~~~~ 51 (387)
+|+++-.|+.| ..+|..|++ .||+|+++.. ++..+.+.+
T Consensus 2 ~I~IiG~G~~G-----~~~a~~L~~-~g~~V~~~~r~~~~~~~~~~ 41 (304)
T PRK06522 2 KIAILGAGAIG-----GLFGAALAQ-AGHDVTLVARRGAHLDALNE 41 (304)
T ss_pred EEEEECCCHHH-----HHHHHHHHh-CCCeEEEEECChHHHHHHHH
Confidence 68888888877 567889999 9999999986 343444444
No 294
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=47.93 E-value=46 Score=28.42 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=33.2
Q ss_pred EEEEcC-CCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhh
Q 040467 8 IVMFPL-MAQGHTIPFLALALHLENTNRYTITFVNTPSNLKK 48 (387)
Q Consensus 8 il~~~~-~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~ 48 (387)
|.|... |+.|-..-.+.||.+|++ +|-.|+++=..++++.
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~-~G~~V~lIDaDpn~pl 44 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAA-RGARVALIDADPNQPL 44 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHH-CCCeEEEEeCCCCCcH
Confidence 445544 688999999999999999 9999999987766543
No 295
>PLN02470 acetolactate synthase
Probab=47.89 E-value=84 Score=31.26 Aligned_cols=88 Identities=15% Similarity=0.197 Sum_probs=51.7
Q ss_pred ecCCCcCCCHHH--HHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEec--cc------c
Q 040467 283 SFGSQNTIAASQ--MMQLAMALEACGKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQ--KW------A 352 (387)
Q Consensus 283 s~GS~~~~~~~~--~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~------~ 352 (387)
+|||....+... .+.+++.|++.|.+.|+.+.+.. . ..+...+.. .+++.++ +. +
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~-------------~-~~l~dal~~-~~~i~~i~~rhE~~A~~~ 66 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGA-------------S-MEIHQALTR-SNCIRNVLCRHEQGEVFA 66 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCcc-------------c-HHHHHHHhc-cCCceEEEeccHHHHHHH
Confidence 578776555433 56789999999999998887663 1 112222210 1122111 11 1
Q ss_pred C--HHHhhCccCcceeeeccC------hhHHHHHHHcCCcccC
Q 040467 353 P--QVEILSHKSISAFLSHCG------WNSVLEALSHRVPIIG 387 (387)
Q Consensus 353 p--q~~lL~~~~~~~~v~HGG------~~s~~eal~~GvP~l~ 387 (387)
- +..+-.. ++++++|.| .+++.+|...++|||+
T Consensus 67 Adgyar~tg~--~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~ 107 (585)
T PLN02470 67 AEGYAKASGK--VGVCIATSGPGATNLVTGLADALLDSVPLVA 107 (585)
T ss_pred HHHHHHHhCC--CEEEEECCCccHHHHHHHHHHHHhcCCcEEE
Confidence 1 1222233 556888888 4488899999999984
No 296
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=47.74 E-value=23 Score=30.15 Aligned_cols=26 Identities=8% Similarity=0.129 Sum_probs=20.5
Q ss_pred ccHHHHHHHHHHHHhCCCcEEEEEeCC
Q 040467 17 GHTIPFLALALHLENTNRYTITFVNTP 43 (387)
Q Consensus 17 GH~~P~l~la~~L~~~rGh~Vt~~~~~ 43 (387)
-|...|.+.|.+|++ +|++|+++...
T Consensus 46 l~~saMRhfa~~L~~-~G~~V~Y~~~~ 71 (224)
T PF04244_consen 46 LFFSAMRHFADELRA-KGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHH-TT--EEEE-TT
T ss_pred HHHHHHHHHHHHHHh-CCCEEEEEeCC
Confidence 367789999999999 99999999866
No 297
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=47.72 E-value=22 Score=30.47 Aligned_cols=19 Identities=21% Similarity=0.151 Sum_probs=16.7
Q ss_pred HHHHHHHHhCCCcEEEEEeC
Q 040467 23 LALALHLENTNRYTITFVNT 42 (387)
Q Consensus 23 l~la~~L~~~rGh~Vt~~~~ 42 (387)
.+||++|.+ +||+|+++..
T Consensus 30 ~aLA~~L~~-~G~~V~li~r 48 (229)
T PRK06732 30 KIIAETFLA-AGHEVTLVTT 48 (229)
T ss_pred HHHHHHHHh-CCCEEEEEEC
Confidence 578899999 9999999874
No 298
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=47.66 E-value=1.5e+02 Score=28.32 Aligned_cols=32 Identities=13% Similarity=0.118 Sum_probs=25.6
Q ss_pred CCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEe
Q 040467 1 MAQRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVN 41 (387)
Q Consensus 1 ~~~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~ 41 (387)
||| +||++..+.+.| +|+++|++ .|++|.++-
T Consensus 1 ~~~---kVLvlG~G~re~-----al~~~l~~-~g~~v~~~~ 32 (435)
T PRK06395 1 MTM---KVMLVGSGGRED-----AIARAIKR-SGAILFSVI 32 (435)
T ss_pred Cce---EEEEECCcHHHH-----HHHHHHHh-CCCeEEEEE
Confidence 555 599999998887 58899999 898777663
No 299
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=47.58 E-value=78 Score=23.93 Aligned_cols=36 Identities=11% Similarity=-0.013 Sum_probs=24.6
Q ss_pred CeeEEEecCCCcCCCHHHHHHHHHHHHhC--CCcEEEE
Q 040467 277 NSVIYVSFGSQNTIAASQMMQLAMALEAC--GKNFIWV 312 (387)
Q Consensus 277 ~~~v~vs~GS~~~~~~~~~~~~~~a~~~~--~~~~l~~ 312 (387)
..+|+++.||......+.+.++.+.+++. ...+-+.
T Consensus 2 ~~lvlv~hGS~~~~~~~~~~~~~~~l~~~~~~~~v~~a 39 (126)
T PRK00923 2 LGLLLVGHGSRLPYNKEVVTKIAEKIKEKHPFYIVEVG 39 (126)
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 35899999997654456778888888763 3345444
No 300
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=47.34 E-value=30 Score=28.10 Aligned_cols=43 Identities=14% Similarity=0.095 Sum_probs=31.9
Q ss_pred EEEEcCCCcccHHH-HHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 8 IVMFPLMAQGHTIP-FLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 8 il~~~~~~~GH~~P-~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
|++.-.++ ||... .+.+.++|++++||+|.++.++.-+..+.-
T Consensus 2 i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~~ 45 (174)
T TIGR02699 2 IAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVKW 45 (174)
T ss_pred EEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHHH
Confidence 55555555 78766 889999999527999999998877755543
No 301
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=47.24 E-value=45 Score=24.91 Aligned_cols=37 Identities=14% Similarity=0.138 Sum_probs=32.1
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcc
Q 040467 8 IVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSN 45 (387)
Q Consensus 8 il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~ 45 (387)
++....++..|.....-++..|++ +|++|.++.....
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~-~G~~v~~l~~~~~ 38 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRD-NGFEVIDLGVDVP 38 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHH-CCCEEEEcCCCCC
Confidence 677888888999999999999999 9999999975433
No 302
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=46.91 E-value=1.4e+02 Score=28.47 Aligned_cols=34 Identities=12% Similarity=0.072 Sum_probs=27.2
Q ss_pred HHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHhCCceEEE
Q 040467 101 HFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALF 144 (387)
Q Consensus 101 ~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~lgiP~v~~ 144 (387)
.+++++++. ++|+|+.... ...+|+++|||++.+
T Consensus 364 ~l~~~i~~~-------~~dliig~s~---~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 364 DLEDLACAA-------GADLLITNSH---GRALAQRLALPLVRA 397 (432)
T ss_pred HHHHHHhhc-------CCCEEEECcc---hHHHHHHcCCCEEEe
Confidence 445666666 8999998864 578999999999876
No 303
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=46.33 E-value=50 Score=28.32 Aligned_cols=95 Identities=12% Similarity=0.111 Sum_probs=49.8
Q ss_pred CeeEEEecCCCc---CCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccC-C-CcEEeccc
Q 040467 277 NSVIYVSFGSQN---TIAASQMMQLAMALEACGKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDS-G-QGLVVQKW 351 (387)
Q Consensus 277 ~~~v~vs~GS~~---~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~v~~~~~ 351 (387)
++.|.+..|+.. ..+.+.+.++++.+.+.++++++..+... . -....+.+..+ + ..+.+..-
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~------------~-~~~~~~~~~~~~~~~~~~~~~~ 171 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEE------------Q-EKEIADQIAAGLQNPVINLAGK 171 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHH------------H-HHHHHHHHHTTHTTTTEEETTT
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchH------------H-HHHHHHHHHHhcccceEeecCC
Confidence 567888888764 36788899999999888766655443321 0 01111111100 1 13444333
Q ss_pred cC---HHHhhCccCcceeeeccChhHHHHHHHcCCcccC
Q 040467 352 AP---QVEILSHKSISAFLSHCGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 352 ~p---q~~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l~ 387 (387)
.+ ..+++.+++ ++|+.- -|.++-|.+.|+|+|+
T Consensus 172 ~~l~e~~ali~~a~--~~I~~D-tg~~HlA~a~~~p~v~ 207 (247)
T PF01075_consen 172 TSLRELAALISRAD--LVIGND-TGPMHLAAALGTPTVA 207 (247)
T ss_dssp S-HHHHHHHHHTSS--EEEEES-SHHHHHHHHTT--EEE
T ss_pred CCHHHHHHHHhcCC--EEEecC-ChHHHHHHHHhCCEEE
Confidence 33 345888865 477754 4588999999999985
No 304
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=46.02 E-value=2.5e+02 Score=26.87 Aligned_cols=35 Identities=23% Similarity=0.063 Sum_probs=26.8
Q ss_pred HHHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHhCCceEEE
Q 040467 100 PHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALF 144 (387)
Q Consensus 100 ~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~lgiP~v~~ 144 (387)
..+.+++++. +||++|... ....+|.++|||++.+
T Consensus 385 ~e~~~~i~~~-------~pDl~ig~~---~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 385 RELLKLLLEY-------KADLLIAGG---KERYTALKLGIPFCDI 419 (456)
T ss_pred HHHHHHHhhc-------CCCEEEEcc---chHHHHHhcCCCEEEc
Confidence 3466677777 899999863 3567788999999875
No 305
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=45.93 E-value=27 Score=32.29 Aligned_cols=35 Identities=20% Similarity=0.194 Sum_probs=30.1
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCC
Q 040467 3 QRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTP 43 (387)
Q Consensus 3 ~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~ 43 (387)
+.+.+|+++-.+..| +..|..|++ +|++|+++-..
T Consensus 2 ~~~~~vvVIGgGi~G-----ls~A~~La~-~G~~V~vie~~ 36 (387)
T COG0665 2 SMKMDVVIIGGGIVG-----LSAAYYLAE-RGADVTVLEAG 36 (387)
T ss_pred CCcceEEEECCcHHH-----HHHHHHHHH-cCCEEEEEecC
Confidence 446789999999888 999999999 99999999643
No 306
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=45.78 E-value=2.2e+02 Score=27.94 Aligned_cols=45 Identities=11% Similarity=0.072 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHhhhhccCCCCCeEEE----eCCCchhhHHHHHHhCCceEEEcchh
Q 040467 97 SFKPHFRKLINGLIDEQNGHKPVCII----ADMFFAWSAEIAQEYGIFNALFVGGG 148 (387)
Q Consensus 97 ~~~~~~~~ll~~~~~~~~~~~pD~vV----~D~~~~~~~~~a~~lgiP~v~~~~~~ 148 (387)
.+...++..++.. .+|.+| +|=..++.+..|.++++|.|.++-.+
T Consensus 96 liA~~iE~~~~a~-------~~Dg~V~l~~CDK~~Pg~lMaaarlniPsi~v~gGp 144 (552)
T PRK00911 96 VIADSIETVVNAH-------WFDGLVAIPGCDKNMPGMLMAAARLNVPSIFVYGGP 144 (552)
T ss_pred HHHHHHHHHhhCC-------CcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCCC
Confidence 3455566666655 788777 78888899999999999999987554
No 307
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=45.71 E-value=27 Score=28.46 Aligned_cols=46 Identities=24% Similarity=0.389 Sum_probs=36.7
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 5 KENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 5 ~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
+..++|+..++.|-..=..++++++.+ +|+.|.|+..++..+.+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~-~g~~v~f~~~~~L~~~l~~ 92 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIR-KGYSVLFITASDLLDELKQ 92 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHH-TT--EEEEEHHHHHHHHHC
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhcc-CCcceeEeecCceeccccc
Confidence 457999999999999999999999999 9999999987766655554
No 308
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=45.57 E-value=33 Score=29.41 Aligned_cols=43 Identities=7% Similarity=-0.046 Sum_probs=32.9
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCC--CcEEEEEeCCcchhhhhh
Q 040467 8 IVMFPLMAQGHTIPFLALALHLENTN--RYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 8 il~~~~~~~GH~~P~l~la~~L~~~r--Gh~Vt~~~~~~~~~~~~~ 51 (387)
|++--.|+.+=+.=.+.+.++|.+ . |++|.++.++.-...+..
T Consensus 2 i~~~itGs~~~~~~~~~l~~~L~~-~~~g~~V~vv~T~~a~~~i~~ 46 (234)
T TIGR02700 2 IGWGITGAGHLLVESFQVMKELKR-EIEELRVSTFVSRAGEEVVRM 46 (234)
T ss_pred eEEEEeCccHhHHHHHHHHHHHHh-hcCCCeEEEEEChhHHhHHhh
Confidence 555555554444678999999999 9 999999998877766665
No 309
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=45.34 E-value=1.8e+02 Score=24.12 Aligned_cols=36 Identities=28% Similarity=0.333 Sum_probs=29.3
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEe
Q 040467 5 KENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVN 41 (387)
Q Consensus 5 ~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~ 41 (387)
+--|.+++..+.|-....+.+|-+-.- +|.+|-++.
T Consensus 28 ~Gli~V~TG~GKGKTTAAlG~alRa~G-hG~rv~vvQ 63 (198)
T COG2109 28 KGLIIVFTGNGKGKTTAALGLALRALG-HGLRVGVVQ 63 (198)
T ss_pred cCeEEEEecCCCChhHHHHHHHHHHhc-CCCEEEEEE
Confidence 345888899999999988888877777 888888775
No 310
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=45.30 E-value=85 Score=30.35 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEecc
Q 040467 19 TIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIP 65 (387)
Q Consensus 19 ~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~ 65 (387)
=.-++.+|+.|.+ .|+++ +.+....+.+++ .|+.+..+.
T Consensus 14 K~~iv~lAk~L~~-lGfeI--~AT~GTak~L~e-----~GI~v~~V~ 52 (513)
T PRK00881 14 KTGIVEFAKALVE-LGVEI--LSTGGTAKLLAE-----AGIPVTEVS 52 (513)
T ss_pred cccHHHHHHHHHH-CCCEE--EEcchHHHHHHH-----CCCeeEEee
Confidence 4458899999999 99998 467888889999 666666654
No 311
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=45.29 E-value=1.3e+02 Score=24.10 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=19.5
Q ss_pred cceeeeccCh------hHHHHHHHcCCcccC
Q 040467 363 ISAFLSHCGW------NSVLEALSHRVPIIG 387 (387)
Q Consensus 363 ~~~~v~HGG~------~s~~eal~~GvP~l~ 387 (387)
.+++++|.|- +++.+|...++|||+
T Consensus 64 ~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~ 94 (164)
T cd07039 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLA 94 (164)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEE
Confidence 4457888774 478899999999984
No 312
>PRK04148 hypothetical protein; Provisional
Probab=45.15 E-value=75 Score=24.56 Aligned_cols=29 Identities=14% Similarity=0.275 Sum_probs=22.8
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEe
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVN 41 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~ 41 (387)
.+|+.+..| .| ..+|..|++ .||+|+.+=
T Consensus 18 ~kileIG~G-fG-----~~vA~~L~~-~G~~ViaID 46 (134)
T PRK04148 18 KKIVELGIG-FY-----FKVAKKLKE-SGFDVIVID 46 (134)
T ss_pred CEEEEEEec-CC-----HHHHHHHHH-CCCEEEEEE
Confidence 568888887 44 346889999 999999884
No 313
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=45.06 E-value=2.2e+02 Score=25.12 Aligned_cols=40 Identities=18% Similarity=0.331 Sum_probs=35.1
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcch
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNL 46 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~ 46 (387)
.+++|+...+.|-..-+..|+..+.. +|+.|.+++...++
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~-~~~~v~~i~~D~~r 115 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHG-KKKTVGFITTDHSR 115 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEEecCCCC
Confidence 47888888899999999999999999 99999999876654
No 314
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=44.82 E-value=25 Score=32.72 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=29.1
Q ss_pred CCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEe
Q 040467 1 MAQRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVN 41 (387)
Q Consensus 1 ~~~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~ 41 (387)
|||+..+|+|+-.+-.| +.+|..|++ +|++|+++=
T Consensus 3 ~~~~~~dViIVGaG~~G-----l~~A~~L~~-~G~~v~liE 37 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAG-----LAAAIALAR-AGASVALVA 37 (388)
T ss_pred CCCCCCCEEEECcCHHH-----HHHHHHHhc-CCCeEEEEe
Confidence 66777789999888554 778889999 999999985
No 315
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=44.74 E-value=55 Score=25.28 Aligned_cols=43 Identities=16% Similarity=0.086 Sum_probs=32.7
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 8 IVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 8 il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
-.++.++..--+.|..-++...++ +|++|+++.+=--...+.+
T Consensus 6 ~IIl~SG~~dk~~~a~iias~A~A-~G~EV~VF~TfwGL~~l~K 48 (137)
T COG2210 6 GIILASGTLDKAYAALIIASGAAA-MGYEVTVFFTFWGLMALRK 48 (137)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeHHHHHHhhc
Confidence 345667788889999999999999 9999999876333333333
No 316
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=44.54 E-value=1.7e+02 Score=25.66 Aligned_cols=42 Identities=24% Similarity=0.516 Sum_probs=28.9
Q ss_pred CcEEeccccC---HHHhhCccCcceeeec---cChh-HHHHHHHcCCcccC
Q 040467 344 QGLVVQKWAP---QVEILSHKSISAFLSH---CGWN-SVLEALSHRVPIIG 387 (387)
Q Consensus 344 ~~v~~~~~~p---q~~lL~~~~~~~~v~H---GG~~-s~~eal~~GvP~l~ 387 (387)
.++....+++ ...++..+++ +|.- .|.| ++.||+++|+|+|+
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~ 305 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIA 305 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEE
Confidence 5677788888 3335666544 5555 3544 46999999999873
No 317
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=44.48 E-value=33 Score=33.45 Aligned_cols=43 Identities=12% Similarity=-0.027 Sum_probs=35.8
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLK 50 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~ 50 (387)
-+++...++.|-..-.+.++.+.+. .|..|.+++.+...+.+.
T Consensus 275 ~~li~G~~G~GKT~l~~~~~~~~~~-~g~~~~yis~e~~~~~i~ 317 (509)
T PRK09302 275 IILVSGATGTGKTLLASKFAEAACR-RGERCLLFAFEESRAQLI 317 (509)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh-CCCcEEEEEecCCHHHHH
Confidence 4667777889999999999999999 999999999876655443
No 318
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=44.42 E-value=1.5e+02 Score=27.77 Aligned_cols=51 Identities=12% Similarity=0.211 Sum_probs=36.1
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCC-cEEEEEeCC-cchhhhhhcCCCCCCeeEEecc
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNR-YTITFVNTP-SNLKKLKSSLPQNSSIHLREIP 65 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rG-h~Vt~~~~~-~~~~~~~~~~~~~~~i~~~~~~ 65 (387)
+|+++-.|..|+ .+|..|++ +| ++|+++.-. +..+++..... ..+++..+.
T Consensus 3 ~ilviGaG~Vg~-----~va~~la~-~~d~~V~iAdRs~~~~~~i~~~~~--~~v~~~~vD 55 (389)
T COG1748 3 KILVIGAGGVGS-----VVAHKLAQ-NGDGEVTIADRSKEKCARIAELIG--GKVEALQVD 55 (389)
T ss_pred cEEEECCchhHH-----HHHHHHHh-CCCceEEEEeCCHHHHHHHHhhcc--ccceeEEec
Confidence 588888877665 57899999 99 999999843 56666666332 345555553
No 319
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=44.35 E-value=1.4e+02 Score=26.93 Aligned_cols=94 Identities=13% Similarity=0.113 Sum_probs=56.0
Q ss_pred CeeEEEecCCCc----CCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCcEE-eccc
Q 040467 277 NSVIYVSFGSQN----TIAASQMMQLAMALEACGKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLV-VQKW 351 (387)
Q Consensus 277 ~~~v~vs~GS~~----~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~ 351 (387)
++.|.+.-|+.. ..+.+.+.++++.+.+.+.++++. |++. + ...-+.+.+.. +.++. +.+-
T Consensus 174 ~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~-G~~~------e----~~~~~~i~~~~---~~~~~~l~g~ 239 (334)
T TIGR02195 174 RPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLF-GSAK------D----HPAGNEIEALL---PGELRNLAGE 239 (334)
T ss_pred CCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEE-EChh------h----HHHHHHHHHhC---CcccccCCCC
Confidence 567888877642 367889999999887777776654 4442 0 00112222221 22222 2222
Q ss_pred c--C-HHHhhCccCcceeeeccChhHHHHHHHcCCcccC
Q 040467 352 A--P-QVEILSHKSISAFLSHCGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 352 ~--p-q~~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l~ 387 (387)
. . -.+++++++ +||+.= -|-++-|.+.|+|+|+
T Consensus 240 ~sL~el~ali~~a~--l~I~~D-SGp~HlAaA~~~P~i~ 275 (334)
T TIGR02195 240 TSLDEAVDLIALAK--AVVTND-SGLMHVAAALNRPLVA 275 (334)
T ss_pred CCHHHHHHHHHhCC--EEEeeC-CHHHHHHHHcCCCEEE
Confidence 2 2 345888865 487754 4578899999999874
No 320
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=44.33 E-value=34 Score=31.98 Aligned_cols=45 Identities=11% Similarity=0.050 Sum_probs=36.2
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 5 KENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 5 ~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
..||++.-.++.|= .-...+.++|.+ .|++|.++.++.-...+..
T Consensus 3 ~k~IllgiTGSiaa-~~~~~ll~~L~~-~g~~V~vv~T~~A~~fv~~ 47 (390)
T TIGR00521 3 NKKILLGVTGGIAA-YKTVELVRELVR-QGAEVKVIMTEAAKKFITP 47 (390)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHh-CCCEEEEEECHhHHHHHHH
Confidence 34788888887555 558999999999 9999999998887766654
No 321
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=44.15 E-value=50 Score=29.31 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEcCCC
Q 040467 290 IAASQMMQLAMALEACGKNFIWVVKPPL 317 (387)
Q Consensus 290 ~~~~~~~~~~~a~~~~~~~~l~~~~~~~ 317 (387)
.+.+..+.+.+|+.+.+.+.||...++.
T Consensus 46 s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ 73 (282)
T cd07025 46 TDEERAADLNAAFADPEIKAIWCARGGY 73 (282)
T ss_pred CHHHHHHHHHHHhhCCCCCEEEEcCCcC
Confidence 4456677799999999999999998875
No 322
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=44.04 E-value=62 Score=25.01 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=34.0
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCc
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPS 44 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~ 44 (387)
.+|++-+..+-+|-.----++..|.+ .|++|..+....
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~-~GfeVi~LG~~v 39 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTN-AGFNVVNLGVLS 39 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHH-CCCEEEECCCCC
Confidence 47999999999999999999999999 999999987533
No 323
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=43.62 E-value=47 Score=27.59 Aligned_cols=38 Identities=8% Similarity=0.254 Sum_probs=29.9
Q ss_pred ccEEEEEcC--CCcccHHHHHHHHHHHHhCCCcEEEEEeCC
Q 040467 5 KENIVMFPL--MAQGHTIPFLALALHLENTNRYTITFVNTP 43 (387)
Q Consensus 5 ~~~il~~~~--~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~ 43 (387)
++|++.++. +..|-..-...||..|++ +|++|.++=..
T Consensus 16 ~~kvI~v~s~kgG~GKTt~a~~LA~~la~-~G~rVllID~D 55 (204)
T TIGR01007 16 EIKVLLITSVKPGEGKSTTSANIAVAFAQ-AGYKTLLIDGD 55 (204)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHh-CCCeEEEEeCC
Confidence 355555554 477889999999999999 99999888543
No 324
>PRK14098 glycogen synthase; Provisional
Probab=43.22 E-value=45 Score=32.31 Aligned_cols=37 Identities=5% Similarity=0.027 Sum_probs=28.0
Q ss_pred ccEEEEEcCC------CcccHHHHHHHHHHHHhCCCcEEEEEeC
Q 040467 5 KENIVMFPLM------AQGHTIPFLALALHLENTNRYTITFVNT 42 (387)
Q Consensus 5 ~~~il~~~~~------~~GH~~P~l~la~~L~~~rGh~Vt~~~~ 42 (387)
.+||++++.- .-|=-..+-.|.++|++ +||+|.++.|
T Consensus 5 ~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~-~g~~v~v~~P 47 (489)
T PRK14098 5 NFKVLYVSGEVSPFVRVSALADFMASFPQALEE-EGFEARIMMP 47 (489)
T ss_pred CcEEEEEeecchhhcccchHHHHHHHHHHHHHH-CCCeEEEEcC
Confidence 3679998763 22334456788999999 9999999986
No 325
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=43.03 E-value=2.1e+02 Score=28.28 Aligned_cols=44 Identities=14% Similarity=0.069 Sum_probs=33.9
Q ss_pred hhHHHHHHHHhhhhccCCCCCeEEE----eCCCchhhHHHHHHhCCceEEEcchh
Q 040467 98 FKPHFRKLINGLIDEQNGHKPVCII----ADMFFAWSAEIAQEYGIFNALFVGGG 148 (387)
Q Consensus 98 ~~~~~~~ll~~~~~~~~~~~pD~vV----~D~~~~~~~~~a~~lgiP~v~~~~~~ 148 (387)
+...++..++.. .+|.+| +|=..++.+..|.++++|.|.++-.+
T Consensus 99 IAdsiE~~~~a~-------~~Dg~v~i~~CDK~~PG~lMaa~rlniPsi~v~gGp 146 (571)
T PRK06131 99 AAMDVEEMIRGY-------PIDGVVLLGGCDKTTPALLMGAASVDLPAIVLSGGP 146 (571)
T ss_pred HHHHHHHHHhcC-------CcceEEEEeeCCCCcHHHHHHHHhcCCCEEEEeCCC
Confidence 445555666655 788766 78888899999999999999987554
No 326
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=42.67 E-value=24 Score=27.54 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=31.0
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEe
Q 040467 8 IVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLRE 63 (387)
Q Consensus 8 il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~ 63 (387)
|+++-.++.|- -+|..|++ +||+|++++.....+.+.+ .++.+..
T Consensus 1 I~I~G~GaiG~-----~~a~~L~~-~g~~V~l~~r~~~~~~~~~-----~g~~~~~ 45 (151)
T PF02558_consen 1 ILIIGAGAIGS-----LYAARLAQ-AGHDVTLVSRSPRLEAIKE-----QGLTITG 45 (151)
T ss_dssp EEEESTSHHHH-----HHHHHHHH-TTCEEEEEESHHHHHHHHH-----HCEEEEE
T ss_pred CEEECcCHHHH-----HHHHHHHH-CCCceEEEEccccHHhhhh-----eeEEEEe
Confidence 34455555443 47899999 9999999998774555666 4555553
No 327
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=42.30 E-value=2.6e+02 Score=26.60 Aligned_cols=36 Identities=19% Similarity=0.189 Sum_probs=28.9
Q ss_pred HHHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHhCCceEEEc
Q 040467 100 PHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFV 145 (387)
Q Consensus 100 ~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~lgiP~v~~~ 145 (387)
..+++++++. +||++|.+.. ...+|+++|||++.+.
T Consensus 362 ~e~~~~l~~~-------~~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 362 FDIESYAKEL-------KIDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred HHHHHHHHhc-------CCCEEEECch---hHHHHHHcCCCEEEec
Confidence 3566677777 8999999975 5788999999998763
No 328
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=42.14 E-value=1.3e+02 Score=27.41 Aligned_cols=98 Identities=10% Similarity=0.041 Sum_probs=56.8
Q ss_pred CCeeEEEecCCCc----CCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccC-CCc-EEec
Q 040467 276 CNSVIYVSFGSQN----TIAASQMMQLAMALEACGKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDS-GQG-LVVQ 349 (387)
Q Consensus 276 ~~~~v~vs~GS~~----~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-v~~~ 349 (387)
+++.|.|.-|+.. ..+.+.+.++++.+.+.+.++++. |++. + ...-..+....... ..+ +-+.
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~-Gg~~------e----~~~~~~i~~~~~~~~~~~~~~l~ 247 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLF-GSAK------D----HEAGNEILAALNTEQQAWCRNLA 247 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEE-eCHH------h----HHHHHHHHHhcccccccceeecc
Confidence 3568888888742 366888999999887777776654 4442 0 00111221111100 011 2222
Q ss_pred cccC---HHHhhCccCcceeeeccChhHHHHHHHcCCcccC
Q 040467 350 KWAP---QVEILSHKSISAFLSHCGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 350 ~~~p---q~~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l~ 387 (387)
+-.+ -.+++.+++ +||+. --|-++-|.+.|+|+|+
T Consensus 248 g~~sL~el~ali~~a~--l~I~n-DTGp~HlAaA~g~P~va 285 (348)
T PRK10916 248 GETQLEQAVILIAACK--AIVTN-DSGLMHVAAALNRPLVA 285 (348)
T ss_pred CCCCHHHHHHHHHhCC--EEEec-CChHHHHHHHhCCCEEE
Confidence 3322 334888866 47765 45679999999999974
No 329
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=42.10 E-value=2.6e+02 Score=27.01 Aligned_cols=34 Identities=18% Similarity=0.125 Sum_probs=26.0
Q ss_pred HHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHhCCceEEE
Q 040467 101 HFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALF 144 (387)
Q Consensus 101 ~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~lgiP~v~~ 144 (387)
.+.+.+++. +||++|.. .....+|+++|||++..
T Consensus 384 e~~~~i~~~-------~pDliig~---s~~~~~a~k~giP~~~~ 417 (475)
T PRK14478 384 ELYKMLKEA-------KADIMLSG---GRSQFIALKAGMPWLDI 417 (475)
T ss_pred HHHHHHhhc-------CCCEEEec---CchhhhhhhcCCCEEEc
Confidence 344556666 89999997 45678999999999843
No 330
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=42.02 E-value=71 Score=27.00 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=28.2
Q ss_pred EEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcc
Q 040467 10 MFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSN 45 (387)
Q Consensus 10 ~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~ 45 (387)
+----+.|--.=..+++.-+.. .||.|++++++.-
T Consensus 33 IEGd~~tGKSvLsqr~~YG~L~-~g~~v~yvsTe~T 67 (235)
T COG2874 33 IEGDNGTGKSVLSQRFAYGFLM-NGYRVTYVSTELT 67 (235)
T ss_pred EECCCCccHHHHHHHHHHHHHh-CCceEEEEEechh
Confidence 3333467888888999999999 9999999998764
No 331
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=41.96 E-value=37 Score=27.23 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=31.0
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcc
Q 040467 8 IVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSN 45 (387)
Q Consensus 8 il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~ 45 (387)
+-|+.+-..|-..=+-+|..+|.+ +|++|.++-+...
T Consensus 5 l~ivG~k~SGKTTLie~lv~~L~~-~G~rVa~iKH~hh 41 (161)
T COG1763 5 LGIVGYKNSGKTTLIEKLVRKLKA-RGYRVATVKHAHH 41 (161)
T ss_pred EEEEecCCCChhhHHHHHHHHHHh-CCcEEEEEEecCC
Confidence 556666678999999999999999 9999999976543
No 332
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=41.81 E-value=96 Score=29.29 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=18.8
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCC
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENTNR 34 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~rG 34 (387)
|||+++-.++..| +|+++|++ .+
T Consensus 1 ~kvliiG~G~~~~-----~l~~~l~~-~~ 23 (420)
T PRK00885 1 MKVLVIGSGGREH-----ALAWKLAQ-SP 23 (420)
T ss_pred CEEEEECCCHHHH-----HHHHHHHh-CC
Confidence 4699999998777 49999988 64
No 333
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=41.62 E-value=1.8e+02 Score=27.49 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=25.9
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcc
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSN 45 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~ 45 (387)
++|+++-.+..+| .|++++++ -|+.+++++.+.+
T Consensus 1 ~kiliiG~G~~~~-----~l~~~~~~-~~~~~~~~~~~~~ 34 (423)
T TIGR00877 1 MKVLVIGNGGREH-----ALAWKLAQ-SPLVKYVYVAPGN 34 (423)
T ss_pred CEEEEECCChHHH-----HHHHHHHh-CCCccEEEEECCC
Confidence 3688888887754 68899999 8888888866554
No 334
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=41.14 E-value=1.3e+02 Score=21.37 Aligned_cols=36 Identities=14% Similarity=0.094 Sum_probs=24.7
Q ss_pred eEEEecCCCcC-CCHHHHHHHHHHHHhC--CCcEEEEEc
Q 040467 279 VIYVSFGSQNT-IAASQMMQLAMALEAC--GKNFIWVVK 314 (387)
Q Consensus 279 ~v~vs~GS~~~-~~~~~~~~~~~a~~~~--~~~~l~~~~ 314 (387)
+|+++.||... ...+.+..+.+.+++. +..+.+...
T Consensus 2 lllv~HGs~~~s~~~~~~~~~~~~l~~~~~~~~v~~a~~ 40 (101)
T cd03409 2 LLVVGHGSPYKDPYKKDIEAQAHNLAESLPDFPYYVGFQ 40 (101)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHHHHHCCCCCEEEEEE
Confidence 78999999875 4456777788888663 355555443
No 335
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=41.12 E-value=51 Score=29.34 Aligned_cols=38 Identities=5% Similarity=0.139 Sum_probs=33.4
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcc
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSN 45 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~ 45 (387)
+|++.-=|+.|-..-.+.||..|++ +|++|.++=....
T Consensus 2 ~ia~~gKGGVGKTTta~nLA~~La~-~G~rVLlID~DpQ 39 (290)
T CHL00072 2 KLAVYGKGGIGKSTTSCNISIALAR-RGKKVLQIGCDPK 39 (290)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHH-CCCeEEEEeccCC
Confidence 4899999999999999999999999 9999998854433
No 336
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=40.91 E-value=62 Score=25.30 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=30.2
Q ss_pred CeeEEEecCCCcCCCHHHHHHHHHHHHhCCCcEEEEEcC
Q 040467 277 NSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKP 315 (387)
Q Consensus 277 ~~~v~vs~GS~~~~~~~~~~~~~~a~~~~~~~~l~~~~~ 315 (387)
..+|.+++||--....+.++++++.+. .+.++++....
T Consensus 51 ~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~~ 88 (150)
T cd01840 51 RKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNPH 88 (150)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEECC
Confidence 359999999998878888999998885 35788776654
No 337
>PRK13236 nitrogenase reductase; Reviewed
Probab=40.81 E-value=56 Score=29.20 Aligned_cols=37 Identities=11% Similarity=0.028 Sum_probs=30.1
Q ss_pred CccEEEEE-cCCCcccHHHHHHHHHHHHhCCCcEEEEEe
Q 040467 4 RKENIVMF-PLMAQGHTIPFLALALHLENTNRYTITFVN 41 (387)
Q Consensus 4 ~~~~il~~-~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~ 41 (387)
..+|++-+ .=|+.|-.+..+.||..|++ +|++|.++=
T Consensus 4 ~~~~~~~~~GKGGVGKTt~a~NLA~~La~-~G~rVLliD 41 (296)
T PRK13236 4 ENIRQIAFYGKGGIGKSTTSQNTLAAMAE-MGQRILIVG 41 (296)
T ss_pred cCceEEEEECCCcCCHHHHHHHHHHHHHH-CCCcEEEEE
Confidence 34455444 34688999999999999999 999999994
No 338
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=40.80 E-value=81 Score=25.19 Aligned_cols=97 Identities=13% Similarity=0.010 Sum_probs=52.1
Q ss_pred ChhhhccccCCCCCCeeEEEecCCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccC
Q 040467 263 STELCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDS 342 (387)
Q Consensus 263 ~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (387)
...++-+||.+.. ...++ |. .........++..+.+-+++=.++... ......
T Consensus 19 ~A~~lg~~La~~g---~~lv~-Gg----~~GlM~a~a~ga~~~gg~viGVlp~~l-----------~~~~~~-------- 71 (159)
T TIGR00725 19 IAYRLGKELAKKG---HILIN-GG----RTGVMEAVSKGAREAGGLVVGILPDED-----------FAGNPY-------- 71 (159)
T ss_pred HHHHHHHHHHHCC---CEEEc-CC----chhHHHHHHHHHHHCCCeEEEECChhh-----------ccCCCC--------
Confidence 3455667776653 45555 42 235666677777666666665544321 000000
Q ss_pred CCcEEeccc-cCHHHhhCccCcceeeeccChhHHHH---HHHcCCccc
Q 040467 343 GQGLVVQKW-APQVEILSHKSISAFLSHCGWNSVLE---ALSHRVPII 386 (387)
Q Consensus 343 ~~~v~~~~~-~pq~~lL~~~~~~~~v~HGG~~s~~e---al~~GvP~l 386 (387)
.......++ .+-..++-..+-..++--||.||..| ++.+++|++
T Consensus 72 ~~~~i~~~~~~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~ 119 (159)
T TIGR00725 72 LTIKVKTGMNFARNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVV 119 (159)
T ss_pred ceEEEECCCcchHHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEE
Confidence 111223344 44445554433346667789988765 588899875
No 339
>PLN02939 transferase, transferring glycosyl groups
Probab=40.44 E-value=48 Score=34.74 Aligned_cols=38 Identities=16% Similarity=0.061 Sum_probs=28.8
Q ss_pred CccEEEEEcCCC------cccHHHHHHHHHHHHhCCCcEEEEEeC
Q 040467 4 RKENIVMFPLMA------QGHTIPFLALALHLENTNRYTITFVNT 42 (387)
Q Consensus 4 ~~~~il~~~~~~------~GH~~P~l~la~~L~~~rGh~Vt~~~~ 42 (387)
+++||+++++-. -|=-.-.-.|.++|++ .||+|.+++|
T Consensus 480 ~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~-~GhdV~VIlP 523 (977)
T PLN02939 480 SGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQK-KGHLVEIVLP 523 (977)
T ss_pred CCCEEEEEEcccccccccccHHHHHHHHHHHHHH-cCCeEEEEeC
Confidence 468999987631 2333446789999999 9999999986
No 340
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=40.42 E-value=36 Score=22.54 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=16.1
Q ss_pred HHHHHHHHhCCCcEEEEEe
Q 040467 23 LALALHLENTNRYTITFVN 41 (387)
Q Consensus 23 l~la~~L~~~rGh~Vt~~~ 41 (387)
+..|..|++ +|++|+++=
T Consensus 9 l~aA~~L~~-~g~~v~v~E 26 (68)
T PF13450_consen 9 LAAAYYLAK-AGYRVTVFE 26 (68)
T ss_dssp HHHHHHHHH-TTSEEEEEE
T ss_pred HHHHHHHHH-CCCcEEEEe
Confidence 678899999 999999995
No 341
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=40.29 E-value=93 Score=25.02 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=32.5
Q ss_pred HhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhh---------------HHHHHHhCCceEEEcc
Q 040467 95 TLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWS---------------AEIAQEYGIFNALFVG 146 (387)
Q Consensus 95 ~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~---------------~~~a~~lgiP~v~~~~ 146 (387)
+..+...+.+++++. +||.++.+..++.- ..++.+.|+|..-+.|
T Consensus 46 l~~I~~~l~~~i~~~-------~Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la~~~~~ipv~ey~P 105 (164)
T PRK00039 46 LKQIYDGLSELIDEY-------QPDEVAIEEVFFNKNPQSALKLGQARGVAILAAAQRGLPVAEYTP 105 (164)
T ss_pred HHHHHHHHHHHHHHh-------CCCEEEEehhhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECH
Confidence 455667788888888 89999888776541 1356677899887754
No 342
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=40.23 E-value=63 Score=29.01 Aligned_cols=33 Identities=18% Similarity=0.098 Sum_probs=28.1
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCC
Q 040467 5 KENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTP 43 (387)
Q Consensus 5 ~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~ 43 (387)
+++|.|+-.+..|. ++|+.|.+ +||+|++....
T Consensus 4 ~m~I~iiG~G~~G~-----~lA~~l~~-~G~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGS-----TLAGLASA-NGHRVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHH-----HHHHHHHH-CCCEEEEEeCC
Confidence 56899998888874 78999999 99999988743
No 343
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=40.21 E-value=23 Score=30.65 Aligned_cols=24 Identities=8% Similarity=-0.036 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCC
Q 040467 19 TIPFLALALHLENTNRYTITFVNTP 43 (387)
Q Consensus 19 ~~P~l~la~~L~~~rGh~Vt~~~~~ 43 (387)
-.-.-.|+++|++ +||+|++++|-
T Consensus 19 gdv~~~L~kaL~~-~G~~V~Vi~P~ 42 (245)
T PF08323_consen 19 GDVVGSLPKALAK-QGHDVRVIMPK 42 (245)
T ss_dssp HHHHHHHHHHHHH-TT-EEEEEEE-
T ss_pred hHHHHHHHHHHHh-cCCeEEEEEcc
Confidence 3456789999999 99999999853
No 344
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=40.11 E-value=1.1e+02 Score=21.80 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=24.4
Q ss_pred eEEEecCCCcCCCHHHHHHHHHHHHhC--CCcEEEEE
Q 040467 279 VIYVSFGSQNTIAASQMMQLAMALEAC--GKNFIWVV 313 (387)
Q Consensus 279 ~v~vs~GS~~~~~~~~~~~~~~a~~~~--~~~~l~~~ 313 (387)
+|+++.||........+..+.+.+++. +..+-+.+
T Consensus 2 ivlv~hGS~~~~~~~~~~~l~~~l~~~~~~~~v~~af 38 (101)
T cd03416 2 LLLVGHGSRDPRAAEALEALAERLRERLPGDEVELAF 38 (101)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHhhCCCCcEEEEE
Confidence 789999998764556777888888663 34554443
No 345
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=39.71 E-value=32 Score=32.95 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=26.3
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCC
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTP 43 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~ 43 (387)
+||+++-.+..| |.-|.+|++ +||+||++-..
T Consensus 1 ~rVai~GaG~Ag-----L~~a~~La~-~g~~vt~~ea~ 32 (485)
T COG3349 1 MRVAIAGAGLAG-----LAAAYELAD-AGYDVTLYEAR 32 (485)
T ss_pred CeEEEEcccHHH-----HHHHHHHHh-CCCceEEEecc
Confidence 368888777665 788999999 99999999643
No 346
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=39.53 E-value=53 Score=28.68 Aligned_cols=34 Identities=6% Similarity=0.066 Sum_probs=30.5
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEe
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVN 41 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~ 41 (387)
.|.++.=|+-|-..-...||..|++ +|++|.++=
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~-~g~rVLliD 35 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAK-LGKRVLQIG 35 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHh-CCCeEEEEe
Confidence 4788866899999999999999999 999999883
No 347
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=39.48 E-value=1.7e+02 Score=23.39 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=19.3
Q ss_pred cceeeeccChh------HHHHHHHcCCcccC
Q 040467 363 ISAFLSHCGWN------SVLEALSHRVPIIG 387 (387)
Q Consensus 363 ~~~~v~HGG~~------s~~eal~~GvP~l~ 387 (387)
.+++++|+|-| .+.||...++|||+
T Consensus 61 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~ 91 (162)
T cd07037 61 PVAVVCTSGTAVANLLPAVVEAYYSGVPLLV 91 (162)
T ss_pred CEEEEECCchHHHHHhHHHHHHHhcCCCEEE
Confidence 34578888754 67799999999984
No 348
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=39.32 E-value=58 Score=30.46 Aligned_cols=43 Identities=23% Similarity=0.223 Sum_probs=32.0
Q ss_pred HhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhhH----------HHHHHhCCceEEE
Q 040467 95 TLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSA----------EIAQEYGIFNALF 144 (387)
Q Consensus 95 ~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~----------~~a~~lgiP~v~~ 144 (387)
.+.....+.+++++. +||++|+-..+.++. .+.++++||.+.-
T Consensus 61 ~eea~~~i~~mv~k~-------~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vta 113 (431)
T TIGR01917 61 LEEAKAKVLEMIKGA-------NPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTA 113 (431)
T ss_pred HHHHHHHHHHHHHhc-------CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 355556677788888 999999998876442 3566799999874
No 349
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=39.26 E-value=36 Score=28.58 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=30.2
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEe
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVN 41 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~ 41 (387)
-|++...|+.|-..-.-.||++|.+ ++|+|..++
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~-~i~~vi~l~ 36 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQ-EIWRVIHLE 36 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHH-hhhhccccc
Confidence 3677778999999999999999999 999998775
No 350
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=39.16 E-value=59 Score=30.41 Aligned_cols=43 Identities=9% Similarity=0.045 Sum_probs=31.9
Q ss_pred HhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhhH----------HHHHHhCCceEEE
Q 040467 95 TLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSA----------EIAQEYGIFNALF 144 (387)
Q Consensus 95 ~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~----------~~a~~lgiP~v~~ 144 (387)
.+.....+.+++++. +||++|+-..+.++. .+.++++||.+.-
T Consensus 61 ~eea~~~i~~mv~k~-------~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~ 113 (431)
T TIGR01918 61 LEEAVARVLEMLKDK-------EPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTS 113 (431)
T ss_pred HHHHHHHHHHHHHhc-------CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 355556677778887 999999998876442 3566799999874
No 351
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=39.04 E-value=18 Score=35.30 Aligned_cols=41 Identities=10% Similarity=0.274 Sum_probs=30.9
Q ss_pred CcEEeccccCH---HHhhCccCcceeeecc---ChhHHHHHHHcCCccc
Q 040467 344 QGLVVQKWAPQ---VEILSHKSISAFLSHC---GWNSVLEALSHRVPII 386 (387)
Q Consensus 344 ~~v~~~~~~pq---~~lL~~~~~~~~v~HG---G~~s~~eal~~GvP~l 386 (387)
..|.+.++... ..++.+ .+++|.=+ |.++..||+++|+|+|
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~--arl~id~s~~eg~~~~ieAiS~GiPqI 455 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDK--LRLIIDLSKEPDLYTQISGISAGIPQI 455 (519)
T ss_pred cEEEEEecCCHHHHHHHHhh--heEEEECCCCCChHHHHHHHHcCCCee
Confidence 46777777663 346777 55588765 7779999999999997
No 352
>TIGR03432 yjhG_yagF probable dehydratase, YjhG/YagF family. This homolog of dihydroxy-acid dehydratases has an odd, sparse distribution. Members are found in two Acidobacteria, two Planctomycetes, Bacillus clausii KSM-K16, and (in two copies each) in strains K12-MG1655 and W3110 of Escherichia coli. The local context is not well conserved, but a few members are adjacent to homologs of the gluconate:H+ symporter (see TIGR00791).
Probab=38.89 E-value=2.8e+02 Score=27.77 Aligned_cols=45 Identities=20% Similarity=0.121 Sum_probs=31.9
Q ss_pred hhhHHHHHHHHhhhhccCCCC-CeEEE----eCCCchhhHHHHH-HhCCceEEEcchh
Q 040467 97 SFKPHFRKLINGLIDEQNGHK-PVCII----ADMFFAWSAEIAQ-EYGIFNALFVGGG 148 (387)
Q Consensus 97 ~~~~~~~~ll~~~~~~~~~~~-pD~vV----~D~~~~~~~~~a~-~lgiP~v~~~~~~ 148 (387)
.+...++..++.. . +|.+| +|=..++.+..+. ++++|.|.+.-.+
T Consensus 132 lIA~siE~~v~ah-------~~~DgvV~i~~CDK~~PgmlMAaa~rlniPsI~V~GGp 182 (640)
T TIGR03432 132 DAAMVMRRLIRSL-------PTRKGVIGIATCDKGLPAMMMALAATHHLPTVLVPGGV 182 (640)
T ss_pred HHHHHHHHHHhcc-------CcCCeEEEeCcCCCchHHHHHHHHHhCCCCEEEEeCCC
Confidence 3455566677766 6 68776 6777777776655 6999999987654
No 353
>PLN02939 transferase, transferring glycosyl groups
Probab=38.88 E-value=1.8e+02 Score=30.70 Aligned_cols=43 Identities=9% Similarity=-0.035 Sum_probs=30.4
Q ss_pred CCcEEeccccCHH---HhhCccCcceeeec----cChhHHHHHHHcCCcccC
Q 040467 343 GQGLVVQKWAPQV---EILSHKSISAFLSH----CGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 343 ~~~v~~~~~~pq~---~lL~~~~~~~~v~H----GG~~s~~eal~~GvP~l~ 387 (387)
.++|.+..+.+.. .++..+++ ||.- +-..+..||+++|+|.|+
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVV 885 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIV 885 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEE
Confidence 3568887888765 47777665 7753 223489999999988774
No 354
>PRK13054 lipid kinase; Reviewed
Probab=38.88 E-value=72 Score=28.49 Aligned_cols=40 Identities=10% Similarity=-0.104 Sum_probs=27.1
Q ss_pred CCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCC
Q 040467 1 MAQRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTP 43 (387)
Q Consensus 1 ~~~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~ 43 (387)
|||+ +++|+-.|..+...-...+.+.|.+ +|+++.+..++
T Consensus 1 ~~~~--~~~~i~N~~~~~~~~~~~~~~~l~~-~g~~~~v~~t~ 40 (300)
T PRK13054 1 MTFP--KSLLILNGKSAGNEELREAVGLLRE-EGHTLHVRVTW 40 (300)
T ss_pred CCCc--eEEEEECCCccchHHHHHHHHHHHH-cCCEEEEEEec
Confidence 5665 3455555655555556677788999 99998876654
No 355
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=38.73 E-value=1.4e+02 Score=28.95 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEecc
Q 040467 20 IPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIP 65 (387)
Q Consensus 20 ~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~ 65 (387)
.-++.+|+.|.+ .|+++ +++....+.+++ .|+.+..+.
T Consensus 11 ~~iv~lAk~L~~-lGfeI--iATgGTak~L~e-----~GI~v~~Vs 48 (511)
T TIGR00355 11 TGIVEFAQGLVE-RGVEL--LSTGGTAKLLAE-----AGVPVTEVS 48 (511)
T ss_pred ccHHHHHHHHHH-CCCEE--EEechHHHHHHH-----CCCeEEEee
Confidence 447899999999 99998 467888889999 666776664
No 356
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=38.63 E-value=78 Score=23.67 Aligned_cols=37 Identities=16% Similarity=0.080 Sum_probs=33.0
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCc
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPS 44 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~ 44 (387)
||++..-++.|-......+++.|++ +|.+|.++-...
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~-~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAE-KGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH-CCCcEEEEECCc
Confidence 4888889999999999999999999 999999887554
No 357
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=38.60 E-value=85 Score=28.02 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=20.1
Q ss_pred cceeeeccChhHHHHHHHc----CCcccC
Q 040467 363 ISAFLSHCGWNSVLEALSH----RVPIIG 387 (387)
Q Consensus 363 ~~~~v~HGG~~s~~eal~~----GvP~l~ 387 (387)
.+++|+-||=||+.+|+.. ++|+++
T Consensus 64 ~d~vi~~GGDGt~l~~~~~~~~~~~pilG 92 (291)
T PRK02155 64 ADLAVVLGGDGTMLGIGRQLAPYGVPLIG 92 (291)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEE
Confidence 4469999999999999773 677763
No 358
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=38.36 E-value=86 Score=26.81 Aligned_cols=99 Identities=13% Similarity=0.141 Sum_probs=51.3
Q ss_pred ccEEEEEcCCCcc--cH--HHHHHHHHHHHhCCCcEEEEEeCCcc--hhhhhhcCCCCCCee--EEeccCCCCCCCCCCC
Q 040467 5 KENIVMFPLMAQG--HT--IPFLALALHLENTNRYTITFVNTPSN--LKKLKSSLPQNSSIH--LREIPFDGIAHDLPPC 76 (387)
Q Consensus 5 ~~~il~~~~~~~G--H~--~P~l~la~~L~~~rGh~Vt~~~~~~~--~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~ 76 (387)
+..|+|.+..+.. .+ .-+..|++.|.+ +|.+|.++.+++. .+...... .+.. ...+..
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~-~~~~vvl~g~~~~~~~~~~~~~~---~~~~~~~~~~~~---------- 170 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKE-RGYRVVLLGGPEEQEKEIADQIA---AGLQNPVINLAG---------- 170 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCC-CT-EEEE--SSHHHHHHHHHHHH---TTHTTTTEEETT----------
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHh-hCceEEEEccchHHHHHHHHHHH---HhcccceEeecC----------
Confidence 4557777665442 22 226899999999 9988988887776 23332221 1111 111110
Q ss_pred CCCCCCCCCCchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHhCCceEEEcch
Q 040467 77 TENSDSLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGG 147 (387)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~lgiP~v~~~~~ 147 (387)
......+-++++ +-|++|.- ..+...+|..+|+|.+.++..
T Consensus 171 -------------------~~~l~e~~ali~---------~a~~~I~~--Dtg~~HlA~a~~~p~v~lfg~ 211 (247)
T PF01075_consen 171 -------------------KTSLRELAALIS---------RADLVIGN--DTGPMHLAAALGTPTVALFGP 211 (247)
T ss_dssp -------------------TS-HHHHHHHHH---------TSSEEEEE--SSHHHHHHHHTT--EEEEESS
T ss_pred -------------------CCCHHHHHHHHh---------cCCEEEec--CChHHHHHHHHhCCEEEEecC
Confidence 011222334554 45888854 346778899999999998643
No 359
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=37.81 E-value=57 Score=28.49 Aligned_cols=35 Identities=9% Similarity=0.118 Sum_probs=31.0
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeC
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNT 42 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~ 42 (387)
.|+++.=|+.|...-...||..|++ +|++|.++=.
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~-~G~rvlliD~ 36 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAK-RGKKVLQIGC 36 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHH-CCCcEEEEec
Confidence 4778877899999999999999999 9999998843
No 360
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=37.69 E-value=34 Score=30.29 Aligned_cols=34 Identities=12% Similarity=0.195 Sum_probs=24.5
Q ss_pred HHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEe
Q 040467 24 ALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLRE 63 (387)
Q Consensus 24 ~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~ 63 (387)
-+|..|++ .||+|++++-....+.+.+ .|+.+..
T Consensus 5 ~~a~~L~~-~G~~V~l~~r~~~~~~i~~-----~Gl~i~~ 38 (293)
T TIGR00745 5 LYGAYLAR-AGHDVTLLARGEQLEALNQ-----EGLRIVS 38 (293)
T ss_pred HHHHHHHh-CCCcEEEEecHHHHHHHHH-----CCcEEEe
Confidence 47889999 9999999986544555666 4555443
No 361
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=37.57 E-value=92 Score=21.76 Aligned_cols=56 Identities=13% Similarity=0.070 Sum_probs=36.9
Q ss_pred cEEEEEcCCCc--ccHHHHHHHHHHHHhCCCcEEEEEe-CCcchhhhhhcCCCCCCeeEEec
Q 040467 6 ENIVMFPLMAQ--GHTIPFLALALHLENTNRYTITFVN-TPSNLKKLKSSLPQNSSIHLREI 64 (387)
Q Consensus 6 ~~il~~~~~~~--GH~~P~l~la~~L~~~rGh~Vt~~~-~~~~~~~~~~~~~~~~~i~~~~~ 64 (387)
.+|+++|.... .+..-...++..|++ .|..|.+-. .......+..+.. .++.|.-+
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~-~g~~v~~d~~~~~l~k~i~~a~~--~g~~~~ii 60 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQA-AGVDVLLDDRNERPGVKFADADL--IGIPYRIV 60 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHH-CCCEEEEECCCCCcccchhHHHh--cCCCEEEE
Confidence 36888887653 466778999999999 999998853 3344444444332 45555544
No 362
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=37.43 E-value=2.9e+02 Score=24.68 Aligned_cols=40 Identities=10% Similarity=0.169 Sum_probs=33.6
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcch
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNL 46 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~ 46 (387)
..|.|+..++.|-..-+..++..|.+ +|+.|.++......
T Consensus 35 ~~i~i~G~~G~GKttl~~~l~~~~~~-~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 35 HRVGITGTPGAGKSTLLEALGMELRR-RGLKVAVIAVDPSS 74 (300)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEecCCCC
Confidence 45677777899999999999999999 99999998865433
No 363
>PRK04328 hypothetical protein; Provisional
Probab=37.26 E-value=2.7e+02 Score=24.01 Aligned_cols=42 Identities=7% Similarity=-0.071 Sum_probs=34.0
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKL 49 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~ 49 (387)
-+++.-.|+.|-..-.+.++.+-.+ +|..+.+++.+...+.+
T Consensus 25 ~ili~G~pGsGKT~l~~~fl~~~~~-~ge~~lyis~ee~~~~i 66 (249)
T PRK04328 25 VVLLSGGPGTGKSIFSQQFLWNGLQ-MGEPGVYVALEEHPVQV 66 (249)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh-cCCcEEEEEeeCCHHHH
Confidence 4667777899999988998888778 99999999986655443
No 364
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=37.14 E-value=3e+02 Score=27.86 Aligned_cols=33 Identities=18% Similarity=0.165 Sum_probs=22.6
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEE-EEeCCc
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENTNRYTIT-FVNTPS 44 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt-~~~~~~ 44 (387)
|||+|+..+..+ +..-++|.+ .||+|. ++|.++
T Consensus 1 mkivf~g~~~~a-----~~~l~~L~~-~~~~i~~V~t~pd 34 (660)
T PRK08125 1 MKAVVFAYHDIG-----CVGIEALLA-AGYEIAAVFTHTD 34 (660)
T ss_pred CeEEEECCCHHH-----HHHHHHHHH-CCCcEEEEEeCCC
Confidence 368888766543 344588899 999998 555443
No 365
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=37.04 E-value=84 Score=28.28 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=38.5
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEecc
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIP 65 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~ 65 (387)
+||+++-.++.|= -+|..|.+ .||+|+++.-+...+.+.+ .|+......
T Consensus 1 mkI~IlGaGAvG~-----l~g~~L~~-~g~~V~~~~R~~~~~~l~~-----~GL~i~~~~ 49 (307)
T COG1893 1 MKILILGAGAIGS-----LLGARLAK-AGHDVTLLVRSRRLEALKK-----KGLRIEDEG 49 (307)
T ss_pred CeEEEECCcHHHH-----HHHHHHHh-CCCeEEEEecHHHHHHHHh-----CCeEEecCC
Confidence 3688999888884 47889999 9999999987776778888 566666543
No 366
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=37.01 E-value=3e+02 Score=24.41 Aligned_cols=37 Identities=8% Similarity=0.055 Sum_probs=26.9
Q ss_pred cEEEEEcCC-CcccHH---HHHHHHHHHHhCCCcEEEEEeCC
Q 040467 6 ENIVMFPLM-AQGHTI---PFLALALHLENTNRYTITFVNTP 43 (387)
Q Consensus 6 ~~il~~~~~-~~GH~~---P~l~la~~L~~~rGh~Vt~~~~~ 43 (387)
++|++++.+ +.=|-. ....+.++|.+ +||+|.++...
T Consensus 5 ~~v~~~~g~~~~~~~~~~~s~~~i~~al~~-~g~~v~~i~~~ 45 (304)
T PRK01372 5 GKVAVLMGGTSAEREVSLNSGAAVLAALRE-AGYDAHPIDPG 45 (304)
T ss_pred cEEEEEeCCCCCCceEeHHhHHHHHHHHHH-CCCEEEEEecC
Confidence 478877744 223333 56889999999 99999999644
No 367
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=36.37 E-value=59 Score=31.24 Aligned_cols=45 Identities=11% Similarity=0.031 Sum_probs=36.3
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 5 KENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 5 ~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
+.||++...++.+=+ =...++++|++ +|++|.++.++.-...+..
T Consensus 70 ~k~IllgVtGsIAay-ka~~lvr~L~k-~G~~V~VvmT~sA~~fv~p 114 (475)
T PRK13982 70 SKRVTLIIGGGIAAY-KALDLIRRLKE-RGAHVRCVLTKAAQQFVTP 114 (475)
T ss_pred CCEEEEEEccHHHHH-HHHHHHHHHHh-CcCEEEEEECcCHHHHhhH
Confidence 457888877765544 78899999999 9999999999887776665
No 368
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=36.26 E-value=4.1e+02 Score=25.71 Aligned_cols=28 Identities=14% Similarity=0.207 Sum_probs=24.5
Q ss_pred CcccHHHHHHHHHHHHhCCCcEEEEEeCC
Q 040467 15 AQGHTIPFLALALHLENTNRYTITFVNTP 43 (387)
Q Consensus 15 ~~GH~~P~l~la~~L~~~rGh~Vt~~~~~ 43 (387)
..|-..-...|++.|++ +|.+|..+-+-
T Consensus 9 ~vGKT~v~~~L~~~l~~-~G~~v~~fKp~ 36 (475)
T TIGR00313 9 SAGKSTLTAGLCRILAR-RGYRVAPFKSQ 36 (475)
T ss_pred CCCHHHHHHHHHHHHHh-CCCeEEEECCc
Confidence 36888899999999999 99999988763
No 369
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=36.18 E-value=2e+02 Score=24.69 Aligned_cols=45 Identities=13% Similarity=0.197 Sum_probs=30.8
Q ss_pred hhhccccCCCCCCeeEEEecCCCcCCCHHHHHHHHHHHHhCCCcEEE
Q 040467 265 ELCKNWLDTKPCNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIW 311 (387)
Q Consensus 265 ~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~a~~~~~~~~l~ 311 (387)
+.+.+++.+. +.++||-.-|......+.++.+.+++++++..+..
T Consensus 22 ~~~~~~~~~~--~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~ 66 (233)
T PRK05282 22 PLIAELLAGR--RKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTG 66 (233)
T ss_pred HHHHHHHcCC--CeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEE
Confidence 3445566533 45899988776644455677799999999888553
No 370
>PF00920 ILVD_EDD: Dehydratase family; InterPro: IPR000581 Two dehydratases, dihydroxy-acid dehydratase (4.2.1.9 from EC) (gene ilvD or ILV3) and 6-phosphogluconate dehydratase (4.2.1.12 from EC) (gene edd) have been shown to be evolutionary related []. Dihydroxy-acid dehydratase catalyses the fourth step in the biosynthesis of isoleucine and valine, the dehydratation of 2,3-dihydroxy-isovaleic acid into alpha-ketoisovaleric acid. 6-Phosphogluconate dehydratase catalyses the first step in the Entner-Doudoroff pathway, the dehydratation of 6-phospho-D-gluconate into 6-phospho-2-dehydro-3-deoxy-D-gluconate. Another protein containing this signature is the Escherichia coli hypothetical protein yjhG. The N-terminal part of the proteins contains a cysteine that could be involved in the binding of a 2Fe-2S iron-sulphur cluster [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GP4_B.
Probab=35.92 E-value=58 Score=31.51 Aligned_cols=48 Identities=10% Similarity=0.077 Sum_probs=30.1
Q ss_pred hhhhHHHHHHHHhhhhccCCCCCeEEE----eCCCchhhHHHHHHhCCceEEEcchhHH
Q 040467 96 LSFKPHFRKLINGLIDEQNGHKPVCII----ADMFFAWSAEIAQEYGIFNALFVGGGSF 150 (387)
Q Consensus 96 ~~~~~~~~~ll~~~~~~~~~~~pD~vV----~D~~~~~~~~~a~~lgiP~v~~~~~~~~ 150 (387)
+.+...++..++.. .+|.+| +|=..++.+..|.++++|.+.++-.+..
T Consensus 65 elIAd~iE~~~~a~-------~~Dg~V~l~gCDK~~Pg~lMaaarlniPsi~v~gGpm~ 116 (521)
T PF00920_consen 65 ELIADSIEEMVRAH-------PFDGMVLLGGCDKIVPGMLMAAARLNIPSIFVYGGPML 116 (521)
T ss_dssp HHHHHHHHHHHTT----------SEEEEE--STTCCHHHHHHHHTTTS-EEE-------
T ss_pred HHHHHHHHHHHhCC-------CcceEEEeccCCCccHHHHHHHHHcCCCEEEEecCCCC
Confidence 44566677777766 789877 6888889999999999999998765543
No 371
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=35.28 E-value=58 Score=22.13 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCC
Q 040467 21 PFLALALHLENTNRYTITFVNTP 43 (387)
Q Consensus 21 P~l~la~~L~~~rGh~Vt~~~~~ 43 (387)
.-+.+|..|++ +|.+||++...
T Consensus 10 ig~E~A~~l~~-~g~~vtli~~~ 31 (80)
T PF00070_consen 10 IGIELAEALAE-LGKEVTLIERS 31 (80)
T ss_dssp HHHHHHHHHHH-TTSEEEEEESS
T ss_pred HHHHHHHHHHH-hCcEEEEEecc
Confidence 34789999999 99999999743
No 372
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=35.02 E-value=2.4e+02 Score=22.77 Aligned_cols=40 Identities=20% Similarity=0.118 Sum_probs=29.0
Q ss_pred hhHHHHHHHHhhhhccCCCCCeEEEeCCCch---hhHHHHHHhCCceEEE
Q 040467 98 FKPHFRKLINGLIDEQNGHKPVCIIADMFFA---WSAEIAQEYGIFNALF 144 (387)
Q Consensus 98 ~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~---~~~~~a~~lgiP~v~~ 144 (387)
..+.+.+++++. +||+|+.-.... .+..+|.++|.|++.=
T Consensus 79 ~a~~l~~~i~~~-------~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsd 121 (181)
T cd01985 79 TAKALAALIKKE-------KPDLILAGATSIGKQLAPRVAALLGVPQISD 121 (181)
T ss_pred HHHHHHHHHHHh-------CCCEEEECCcccccCHHHHHHHHhCCCccee
Confidence 344455666666 799999766555 4568899999998763
No 373
>PRK08163 salicylate hydroxylase; Provisional
Probab=34.49 E-value=49 Score=30.79 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=27.8
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEe
Q 040467 3 QRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVN 41 (387)
Q Consensus 3 ~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~ 41 (387)
++..+|+|+-.+-.| +.+|..|++ +|++|+++=
T Consensus 2 ~~~~~V~IvGaGiaG-----l~~A~~L~~-~g~~v~v~E 34 (396)
T PRK08163 2 TKVTPVLIVGGGIGG-----LAAALALAR-QGIKVKLLE 34 (396)
T ss_pred CCCCeEEEECCcHHH-----HHHHHHHHh-CCCcEEEEe
Confidence 346789999998766 788899999 999999984
No 374
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=34.48 E-value=95 Score=23.49 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=27.9
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeC
Q 040467 8 IVMFPLMAQGHTIPFLALALHLENTNRYTITFVNT 42 (387)
Q Consensus 8 il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~ 42 (387)
++++.++..++-.-+..+++.|++ +|+.|..+..
T Consensus 1 ~vv~~HG~~~~~~~~~~~~~~l~~-~G~~v~~~~~ 34 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQPLAEALAE-QGYAVVAFDY 34 (145)
T ss_dssp EEEEECTTTTTTHHHHHHHHHHHH-TTEEEEEESC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH-CCCEEEEEec
Confidence 356677777778889999999999 9999998843
No 375
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=34.25 E-value=2.3e+02 Score=22.19 Aligned_cols=36 Identities=14% Similarity=0.103 Sum_probs=31.6
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCc
Q 040467 8 IVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPS 44 (387)
Q Consensus 8 il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~ 44 (387)
|.+...++.|-...+..++..|.+ +|++|.++....
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~-~g~~v~ii~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRA-RGKRVAVLAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH-CCCEEEEEEeCC
Confidence 677778899999999999999999 999999987553
No 376
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=34.05 E-value=2e+02 Score=21.54 Aligned_cols=22 Identities=14% Similarity=0.320 Sum_probs=16.1
Q ss_pred hhhhHHHHHHHHhhhhccCCCCCeEEEeC
Q 040467 96 LSFKPHFRKLINGLIDEQNGHKPVCIIAD 124 (387)
Q Consensus 96 ~~~~~~~~~ll~~~~~~~~~~~pD~vV~D 124 (387)
+.+...+.+++++. +||.|++-
T Consensus 86 ~~~~~~l~~~i~~~-------~p~~V~t~ 107 (128)
T PF02585_consen 86 EELVRDLEDLIREF-------RPDVVFTP 107 (128)
T ss_dssp HHHHHHHHHHHHHH--------ESEEEEE
T ss_pred HHHHHHHHHHHHHc-------CCCEEEEC
Confidence 55666788888888 89988854
No 377
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=33.90 E-value=84 Score=25.49 Aligned_cols=120 Identities=15% Similarity=0.057 Sum_probs=60.3
Q ss_pred ccHHHHHHHHHHH-HhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCC------CCCCCCC----CCCCC
Q 040467 17 GHTIPFLALALHL-ENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDL------PPCTENS----DSLPF 85 (387)
Q Consensus 17 GH~~P~l~la~~L-~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------~~~~~~~----~~~~~ 85 (387)
+.+.=.+..|++| .+ .|.+|.+.-.. ....+++. ..+..+.++.. ..|-+ ....... .....
T Consensus 17 ~~~e~~v~~a~~~~~~-~g~dViIsRG~-ta~~lr~~----~~iPVV~I~~s-~~Dil~al~~a~~~~~~Iavv~~~~~~ 89 (176)
T PF06506_consen 17 ASLEEAVEEARQLLES-EGADVIISRGG-TAELLRKH----VSIPVVEIPIS-GFDILRALAKAKKYGPKIAVVGYPNII 89 (176)
T ss_dssp --HHHHHHHHHHHHTT-TT-SEEEEEHH-HHHHHHCC-----SS-EEEE----HHHHHHHHHHCCCCTSEEEEEEESS-S
T ss_pred ecHHHHHHHHHHhhHh-cCCeEEEECCH-HHHHHHHh----CCCCEEEECCC-HhHHHHHHHHHHhcCCcEEEEeccccc
Confidence 5666778899999 78 99999887643 33444442 23445555431 00000 0000000 00001
Q ss_pred CchhHHHHHHh--------hhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHhCCceEEEcchhHH
Q 040467 86 HLFPNFFESTL--------SFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVGGGSF 150 (387)
Q Consensus 86 ~~~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~lgiP~v~~~~~~~~ 150 (387)
.....+...+. .....++..++++..+ ..|+||-+.. ...+|+++|+|++.+.++.-+
T Consensus 90 ~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~----G~~viVGg~~---~~~~A~~~gl~~v~i~sg~es 155 (176)
T PF06506_consen 90 PGLESIEELLGVDIKIYPYDSEEEIEAAIKQAKAE----GVDVIVGGGV---VCRLARKLGLPGVLIESGEES 155 (176)
T ss_dssp CCHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHT----T--EEEESHH---HHHHHHHTTSEEEESS--HHH
T ss_pred HHHHHHHHHhCCceEEEEECCHHHHHHHHHHHHHc----CCcEEECCHH---HHHHHHHcCCcEEEEEecHHH
Confidence 12233333331 1245677777776554 7999999974 468899999999998764443
No 378
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=33.84 E-value=3.6e+02 Score=28.69 Aligned_cols=35 Identities=11% Similarity=-0.068 Sum_probs=27.2
Q ss_pred HHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHhCCceEEEc
Q 040467 101 HFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFV 145 (387)
Q Consensus 101 ~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~lgiP~v~~~ 145 (387)
.+.+++++. +||++|.... ...+|+++|||++-..
T Consensus 380 el~~~i~~~-------~pDLlig~~~---~~~~a~k~giP~~~~~ 414 (917)
T PRK14477 380 GLLRVMREK-------MPDLIVAGGK---TKFLALKTRTPFLDIN 414 (917)
T ss_pred HHHHHHHhc-------CCCEEEecCc---hhhHHHHcCCCeEEcc
Confidence 455677777 8999998554 5678999999999654
No 379
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=33.82 E-value=2.5e+02 Score=22.46 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=29.6
Q ss_pred hhHHHHHHHHhhhhccCCCCCeEEEeCCCch---hhHHHHHHhCCceEEEc
Q 040467 98 FKPHFRKLINGLIDEQNGHKPVCIIADMFFA---WSAEIAQEYGIFNALFV 145 (387)
Q Consensus 98 ~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~---~~~~~a~~lgiP~v~~~ 145 (387)
....+.+++++. +||+|+.-.... .+..+|.++|.|++.-.
T Consensus 71 ~a~al~~~i~~~-------~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv 114 (168)
T cd01715 71 YAPALVALAKKE-------KPSHILAGATSFGKDLAPRVAAKLDVGLISDV 114 (168)
T ss_pred HHHHHHHHHHhc-------CCCEEEECCCccccchHHHHHHHhCCCceeeE
Confidence 344555666666 799999766554 56688999999998753
No 380
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=33.80 E-value=84 Score=30.93 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=24.1
Q ss_pred CcccHHHHHH---HHHHHHhCCCcEEEEEeCCcc
Q 040467 15 AQGHTIPFLA---LALHLENTNRYTITFVNTPSN 45 (387)
Q Consensus 15 ~~GH~~P~l~---la~~L~~~rGh~Vt~~~~~~~ 45 (387)
-.||+.+.+. +|+-++. +||+|.|+|..+.
T Consensus 21 HlGH~~~~l~ADv~aRy~Rl-~G~~v~fvtGtDe 53 (558)
T COG0143 21 HLGHLYTYLAADVYARYLRL-RGYEVFFLTGTDE 53 (558)
T ss_pred chhhHHHHHHHHHHHHHHHh-cCCeEEEEeccCC
Confidence 5699997774 6777778 9999999996553
No 381
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=33.66 E-value=55 Score=29.06 Aligned_cols=38 Identities=11% Similarity=0.076 Sum_probs=30.0
Q ss_pred CCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCc
Q 040467 1 MAQRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPS 44 (387)
Q Consensus 1 ~~~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~ 44 (387)
|+++-.+|.++-.+..|. .+|..|+. +||+|+++-...
T Consensus 1 ~~~~~~~V~ViGaG~mG~-----~iA~~~a~-~G~~V~l~d~~~ 38 (286)
T PRK07819 1 MSDAIQRVGVVGAGQMGA-----GIAEVCAR-AGVDVLVFETTE 38 (286)
T ss_pred CCCCccEEEEEcccHHHH-----HHHHHHHh-CCCEEEEEECCH
Confidence 455545899999988885 67888999 999999996433
No 382
>PRK06835 DNA replication protein DnaC; Validated
Probab=33.61 E-value=57 Score=29.69 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=37.9
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
..++|+..++.|-..=..++|++|.. +|+.|.+++.......+..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~-~g~~V~y~t~~~l~~~l~~ 228 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLD-RGKSVIYRTADELIEILRE 228 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHH-CCCeEEEEEHHHHHHHHHH
Confidence 46888888899999999999999999 9999999987765554443
No 383
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=33.60 E-value=56 Score=31.16 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=25.8
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCC
Q 040467 3 QRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTP 43 (387)
Q Consensus 3 ~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~ 43 (387)
+++.+++++..+. .- +.+|+.|++ +|++|++....
T Consensus 3 ~~~k~v~iiG~g~----~G-~~~A~~l~~-~G~~V~~~d~~ 37 (450)
T PRK14106 3 LKGKKVLVVGAGV----SG-LALAKFLKK-LGAKVILTDEK 37 (450)
T ss_pred cCCCEEEEECCCH----HH-HHHHHHHHH-CCCEEEEEeCC
Confidence 4456777775433 23 499999999 99999998754
No 384
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=33.59 E-value=1.2e+02 Score=22.72 Aligned_cols=42 Identities=12% Similarity=0.156 Sum_probs=33.4
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 8 IVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 8 il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
++|+-. ..|+...++.+++.+++ +|..|..+|.....+..+.
T Consensus 56 ~vi~is-~sg~~~~~~~~~~~ak~-~g~~vi~iT~~~~~~l~~~ 97 (131)
T PF01380_consen 56 LVIIIS-YSGETRELIELLRFAKE-RGAPVILITSNSESPLARL 97 (131)
T ss_dssp EEEEEE-SSSTTHHHHHHHHHHHH-TTSEEEEEESSTTSHHHHH
T ss_pred eeEeee-ccccchhhhhhhHHHHh-cCCeEEEEeCCCCCchhhh
Confidence 333333 56899999999999999 9999999987777666666
No 385
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=33.23 E-value=2.3e+02 Score=21.89 Aligned_cols=55 Identities=15% Similarity=0.182 Sum_probs=41.3
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCC--cchhhhhhcCCCCCCeeEEeccCC
Q 040467 4 RKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTP--SNLKKLKSSLPQNSSIHLREIPFD 67 (387)
Q Consensus 4 ~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~ 67 (387)
++||+|+.--|+-.-+|-++ .+|.. .|..-.+-+.+ -...-+++ .||....++++
T Consensus 15 ~~MrFLIThnPtnaTln~fi---eELkK-ygvttvVRVCe~TYdt~~lek-----~GI~Vldw~f~ 71 (173)
T KOG2836|consen 15 KNMRFLITHNPTNATLNKFI---EELKK-YGVTTVVRVCEPTYDTTPLEK-----EGITVLDWPFD 71 (173)
T ss_pred cceEEEEecCCCchhHHHHH---HHHHh-cCCeEEEEecccccCCchhhh-----cCceEeecccc
Confidence 36789999999988887665 69999 99765554433 34556677 89999999875
No 386
>PLN02568 polyamine oxidase
Probab=33.22 E-value=52 Score=32.36 Aligned_cols=35 Identities=29% Similarity=0.390 Sum_probs=29.0
Q ss_pred CCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCC-----cEEEEEe
Q 040467 1 MAQRKENIVMFPLMAQGHTIPFLALALHLENTNR-----YTITFVN 41 (387)
Q Consensus 1 ~~~~~~~il~~~~~~~GH~~P~l~la~~L~~~rG-----h~Vt~~~ 41 (387)
|||++.+|+++-.|..| +..|..|++ .| ++|+++=
T Consensus 1 ~~~~~~~v~iiGaG~aG-----l~aa~~L~~-~g~~~~~~~v~v~E 40 (539)
T PLN02568 1 MVAKKPRIVIIGAGMAG-----LTAANKLYT-SSAANDMFELTVVE 40 (539)
T ss_pred CCCCCCcEEEECCCHHH-----HHHHHHHHh-cccccCCceEEEEe
Confidence 78888899999888744 778899998 77 9999884
No 387
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=33.16 E-value=67 Score=25.77 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=34.4
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCc--chhhhhhcCCCCCCeeEEecc
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPS--NLKKLKSSLPQNSSIHLREIP 65 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~--~~~~~~~~~~~~~~i~~~~~~ 65 (387)
.+|+++-++++||.. |.-|+. .|++|++..-+. .+++.++ .|++..++.
T Consensus 5 k~IAViGyGsQG~a~-----AlNLrD-SG~~V~Vglr~~s~s~~~A~~-----~Gf~v~~~~ 55 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAH-----ALNLRD-SGVNVIVGLREGSASWEKAKA-----DGFEVMSVA 55 (165)
T ss_dssp SEEEEES-SHHHHHH-----HHHHHH-CC-EEEEEE-TTCHHHHHHHH-----TT-ECCEHH
T ss_pred CEEEEECCChHHHHH-----HHHHHh-CCCCEEEEecCCCcCHHHHHH-----CCCeeccHH
Confidence 479999999999964 778999 999999887544 4666677 666665543
No 388
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=33.15 E-value=1.2e+02 Score=24.70 Aligned_cols=28 Identities=18% Similarity=0.027 Sum_probs=21.9
Q ss_pred CCeEEEe-CCCch-hhHHHHHHhCCceEEE
Q 040467 117 KPVCIIA-DMFFA-WSAEIAQEYGIFNALF 144 (387)
Q Consensus 117 ~pD~vV~-D~~~~-~~~~~a~~lgiP~v~~ 144 (387)
++|.||. +.--. .+..+|.++|+|++.+
T Consensus 53 ~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 53 GIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred CCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 6898884 33333 7889999999999987
No 389
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=33.10 E-value=41 Score=31.62 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=25.8
Q ss_pred EEEEcC-CCcccHHHHHHHHHHHHhCCCcEEEEE
Q 040467 8 IVMFPL-MAQGHTIPFLALALHLENTNRYTITFV 40 (387)
Q Consensus 8 il~~~~-~~~GH~~P~l~la~~L~~~rGh~Vt~~ 40 (387)
|++-.. .+.|-+.-.+.|.++|++ ||++|.-+
T Consensus 3 vvIAg~~SG~GKTTvT~glm~aL~~-rg~~Vqpf 35 (451)
T COG1797 3 VVIAGTSSGSGKTTVTLGLMRALRR-RGLKVQPF 35 (451)
T ss_pred eEEecCCCCCcHHHHHHHHHHHHHh-cCCccccc
Confidence 444443 366999999999999999 99999755
No 390
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=33.03 E-value=67 Score=26.10 Aligned_cols=29 Identities=21% Similarity=0.061 Sum_probs=20.6
Q ss_pred CCeEEEeCCCchh--hHHHHHHhCCceEEEc
Q 040467 117 KPVCIIADMFFAW--SAEIAQEYGIFNALFV 145 (387)
Q Consensus 117 ~pD~vV~D~~~~~--~~~~a~~lgiP~v~~~ 145 (387)
+||+||....... ....-++.|||++.+.
T Consensus 69 ~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 69 KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 8999998654332 3445577899998874
No 391
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=33.00 E-value=1e+02 Score=25.35 Aligned_cols=44 Identities=20% Similarity=0.335 Sum_probs=27.8
Q ss_pred HHHHHHHHhhhhccCCCCCeEEEeCCCch-hhHHHHHHhCCceEEEcchh
Q 040467 100 PHFRKLINGLIDEQNGHKPVCIIADMFFA-WSAEIAQEYGIFNALFVGGG 148 (387)
Q Consensus 100 ~~~~~ll~~~~~~~~~~~pD~vV~D~~~~-~~~~~a~~lgiP~v~~~~~~ 148 (387)
..+++++++... +..++|-..+-- ++..+|+++++|.|.+.|+-
T Consensus 47 ~~l~~~i~~~~~-----~~~~liGSSlGG~~A~~La~~~~~~avLiNPav 91 (187)
T PF05728_consen 47 AQLEQLIEELKP-----ENVVLIGSSLGGFYATYLAERYGLPAVLINPAV 91 (187)
T ss_pred HHHHHHHHhCCC-----CCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCC
Confidence 344555655511 123666554444 77789999999998886643
No 392
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=32.76 E-value=88 Score=24.89 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=28.7
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 5 KENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 5 ~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
..+|+++-.+..| ...++.|.+ .|++||++. ++..+.+.+
T Consensus 13 ~~~vlVvGGG~va-----~rka~~Ll~-~ga~V~VIs-p~~~~~l~~ 52 (157)
T PRK06719 13 NKVVVIIGGGKIA-----YRKASGLKD-TGAFVTVVS-PEICKEMKE 52 (157)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHh-CCCEEEEEc-CccCHHHHh
Confidence 3478888776544 778999999 999999996 444444443
No 393
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=32.57 E-value=96 Score=27.67 Aligned_cols=34 Identities=15% Similarity=0.077 Sum_probs=29.7
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEe
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVN 41 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~ 41 (387)
.|.|..=|+.|-..-...||..|++ .|++|.++=
T Consensus 6 ~iai~~KGGvGKTt~~~nLa~~la~-~g~kVLliD 39 (295)
T PRK13234 6 QIAFYGKGGIGKSTTSQNTLAALVE-MGQKILIVG 39 (295)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHH-CCCeEEEEe
Confidence 4556666789999999999999999 999999994
No 394
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=32.47 E-value=52 Score=30.78 Aligned_cols=44 Identities=16% Similarity=0.025 Sum_probs=36.3
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhc
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSS 52 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~ 52 (387)
||++-..++..= ...+.+++.|.+ +|++|.++-++.....+...
T Consensus 6 ~ill~v~gsiaa-yk~~~l~r~L~~-~ga~v~vvmt~~a~~fv~p~ 49 (392)
T COG0452 6 RILLGVTGSIAA-YKSVELVRLLRR-SGAEVRVVMTESARKFITPL 49 (392)
T ss_pred eEEEEecCchhh-hhHHHHHHHHhh-CCCeeEEEcchhhhhhcCcc
Confidence 888888877553 445899999999 99999999998888777773
No 395
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=32.42 E-value=55 Score=30.95 Aligned_cols=37 Identities=22% Similarity=0.373 Sum_probs=28.1
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcc
Q 040467 3 QRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSN 45 (387)
Q Consensus 3 ~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~ 45 (387)
+++.||+++-.+..| +..|+.|.. .+++||++....+
T Consensus 8 ~~~~~vVIvGgG~aG-----l~~a~~L~~-~~~~ItlI~~~~~ 44 (424)
T PTZ00318 8 LKKPNVVVLGTGWAG-----AYFVRNLDP-KKYNITVISPRNH 44 (424)
T ss_pred CCCCeEEEECCCHHH-----HHHHHHhCc-CCCeEEEEcCCCC
Confidence 456789999887665 446888877 8999999975543
No 396
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=32.39 E-value=97 Score=27.31 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=34.0
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLK 47 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~ 47 (387)
-|+|+..++.|-..-...||..|++ .|++|.++....++.
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~-~g~~V~li~~D~~r~ 113 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKK-QGKSVLLAAGDTFRA 113 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHh-cCCEEEEEeCCCCCH
Confidence 4666677799999999999999999 999999998776543
No 397
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=32.17 E-value=1.1e+02 Score=20.97 Aligned_cols=33 Identities=21% Similarity=0.173 Sum_probs=28.6
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEe
Q 040467 8 IVMFPLMAQGHTIPFLALALHLENTNRYTITFVN 41 (387)
Q Consensus 8 il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~ 41 (387)
+++...++.|-..-...+|..|++ .|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-RGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEC
Confidence 456666788999999999999999 999998886
No 398
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=32.16 E-value=75 Score=31.07 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=21.5
Q ss_pred CCeEEEeCCCchhhHHHHHHhCCceEEEc
Q 040467 117 KPVCIIADMFFAWSAEIAQEYGIFNALFV 145 (387)
Q Consensus 117 ~pD~vV~D~~~~~~~~~a~~lgiP~v~~~ 145 (387)
+||+||.+.+ ...+|+++|||++.++
T Consensus 362 ~PdliiG~~~---er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 362 APELVLGTQM---ERHSAKRLGIPCAVIS 387 (519)
T ss_pred CCCEEEEcch---HHHHHHHcCCCEEEec
Confidence 7999998763 5668999999998774
No 399
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=32.12 E-value=70 Score=26.71 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=31.3
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcc
Q 040467 5 KENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSN 45 (387)
Q Consensus 5 ~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~ 45 (387)
+.+|-+=..|+.|-..-||.=|.+|++ +|.+|.+-.-+..
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~-~G~DVViG~veth 44 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKE-QGVDVVIGYVETH 44 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHH-TT--EEEEE---T
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHH-CCCCEEEEEecCC
Confidence 678888889999999999999999999 9999998765543
No 400
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=31.95 E-value=1.3e+02 Score=24.93 Aligned_cols=29 Identities=10% Similarity=-0.185 Sum_probs=22.0
Q ss_pred CCeEEEeC-CCch-hhHHHHHHhCCceEEEc
Q 040467 117 KPVCIIAD-MFFA-WSAEIAQEYGIFNALFV 145 (387)
Q Consensus 117 ~pD~vV~D-~~~~-~~~~~a~~lgiP~v~~~ 145 (387)
++|+|+.= .--. .+..+|.++|+|.+.+.
T Consensus 50 ~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vR 80 (189)
T PRK09219 50 GITKILTIEASGIAPAVMAALALGVPVVFAK 80 (189)
T ss_pred CCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 78998843 3333 77789999999998874
No 401
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=31.84 E-value=2.2e+02 Score=21.63 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=23.7
Q ss_pred eeEEEecCCCcCCCHHHHHHHHHHHHh-CCCcEEEE
Q 040467 278 SVIYVSFGSQNTIAASQMMQLAMALEA-CGKNFIWV 312 (387)
Q Consensus 278 ~~v~vs~GS~~~~~~~~~~~~~~a~~~-~~~~~l~~ 312 (387)
.+|+++-||-.....+.++.+.+.+++ .+..+-+.
T Consensus 2 ~lllvgHGSR~~~~~~~~~~la~~l~~~~~~~v~~a 37 (125)
T cd03415 2 AIIIITHGSRRNTFNEDMEEWAAYLERKLGVPVYLT 37 (125)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHhccCCceEEE
Confidence 378888888877667777777777754 44454444
No 402
>PRK07208 hypothetical protein; Provisional
Probab=31.79 E-value=49 Score=31.84 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=28.1
Q ss_pred CCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEe
Q 040467 2 AQRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVN 41 (387)
Q Consensus 2 ~~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~ 41 (387)
||++.+|+++-.+..| |..|..|++ +|++|+++=
T Consensus 1 ~~~~~~vvIiGaGisG-----L~aA~~L~~-~g~~v~v~E 34 (479)
T PRK07208 1 MTNKKSVVIIGAGPAG-----LTAAYELLK-RGYPVTVLE 34 (479)
T ss_pred CCCCCcEEEECcCHHH-----HHHHHHHHH-CCCcEEEEe
Confidence 4556689999888654 888999999 999999984
No 403
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=31.68 E-value=1.1e+02 Score=26.42 Aligned_cols=40 Identities=13% Similarity=0.039 Sum_probs=32.6
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCc
Q 040467 4 RKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPS 44 (387)
Q Consensus 4 ~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~ 44 (387)
++.+++.-.-++.|-......||..|++ +|++|.++-...
T Consensus 2 ~~i~~i~~~KGGvGKSt~a~~la~~l~~-~g~~vl~iD~D~ 41 (241)
T PRK13886 2 AKIHMVLQGKGGVGKSFIAATIAQYKAS-KGQKPLCIDTDP 41 (241)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHh-CCCCEEEEECCC
Confidence 3555666666899999999999999999 999999885543
No 404
>PRK14099 glycogen synthase; Provisional
Probab=31.60 E-value=2.8e+02 Score=26.88 Aligned_cols=24 Identities=21% Similarity=-0.023 Sum_probs=15.5
Q ss_pred cceeee---ccC-hhHHHHHHHcCCccc
Q 040467 363 ISAFLS---HCG-WNSVLEALSHRVPII 386 (387)
Q Consensus 363 ~~~~v~---HGG-~~s~~eal~~GvP~l 386 (387)
.++||. +=| ..+..||+++|+|.|
T Consensus 370 aDifv~PS~~E~fGl~~lEAma~G~ppV 397 (485)
T PRK14099 370 ADALLVPSRFEPCGLTQLCALRYGAVPV 397 (485)
T ss_pred CCEEEECCccCCCcHHHHHHHHCCCCcE
Confidence 334664 333 347789999996554
No 405
>PRK13604 luxD acyl transferase; Provisional
Probab=31.44 E-value=96 Score=27.90 Aligned_cols=35 Identities=20% Similarity=0.184 Sum_probs=29.5
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEE
Q 040467 5 KENIVMFPLMAQGHTIPFLALALHLENTNRYTITFV 40 (387)
Q Consensus 5 ~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~ 40 (387)
+...+++.++..++-.-+..+|+.|.+ +|..|.-+
T Consensus 36 ~~~~vIi~HGf~~~~~~~~~~A~~La~-~G~~vLrf 70 (307)
T PRK13604 36 KNNTILIASGFARRMDHFAGLAEYLSS-NGFHVIRY 70 (307)
T ss_pred CCCEEEEeCCCCCChHHHHHHHHHHHH-CCCEEEEe
Confidence 346788888888887779999999999 99988766
No 406
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=31.43 E-value=80 Score=29.96 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=21.1
Q ss_pred CCeEEEeCCCchhhHHHHHHhCCceEEEc
Q 040467 117 KPVCIIADMFFAWSAEIAQEYGIFNALFV 145 (387)
Q Consensus 117 ~pD~vV~D~~~~~~~~~a~~lgiP~v~~~ 145 (387)
+||++|.+.. ...+|+++|+|.+.+.
T Consensus 370 ~pdliig~~~---~~~~a~~~gip~~~~~ 395 (430)
T cd01981 370 EPELIFGTQM---ERHIGKRLDIPCAVIS 395 (430)
T ss_pred CCCEEEecch---hhHHHHHcCCCEEEEe
Confidence 7999999873 4456899999998874
No 407
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=31.41 E-value=72 Score=28.65 Aligned_cols=35 Identities=20% Similarity=0.063 Sum_probs=24.8
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcch
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNL 46 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~ 46 (387)
+||+|+.+|..+ ...-++|.+ .||+|.-+.+...+
T Consensus 2 mkivF~GTp~fa-----~~~L~~L~~-~~~eivaV~Tqpdk 36 (307)
T COG0223 2 MRIVFFGTPEFA-----VPSLEALIE-AGHEIVAVVTQPDK 36 (307)
T ss_pred cEEEEEcCchhh-----HHHHHHHHh-CCCceEEEEeCCCC
Confidence 469999888643 455678888 88999866654433
No 408
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=31.32 E-value=67 Score=30.40 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=27.2
Q ss_pred HHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHhCCceEEE
Q 040467 101 HFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALF 144 (387)
Q Consensus 101 ~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~lgiP~v~~ 144 (387)
.+.+++++. +||++|.... ...+|+++|||+..+
T Consensus 360 e~~~~i~~~-------~pDliig~~~---~~~~a~k~giP~~~~ 393 (421)
T cd01976 360 ELEEFVKRL-------KPDLIGSGIK---EKYVFQKMGIPFRQM 393 (421)
T ss_pred HHHHHHHHh-------CCCEEEecCc---chhhhhhcCCCeEeC
Confidence 455666666 8999998875 667899999999765
No 409
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=31.22 E-value=1.1e+02 Score=25.70 Aligned_cols=38 Identities=13% Similarity=0.126 Sum_probs=24.6
Q ss_pred CCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCC
Q 040467 1 MAQRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTP 43 (387)
Q Consensus 1 ~~~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~ 43 (387)
|+|+..+|+++-. .|.+ -..+++.|.+ +||+|+++...
T Consensus 1 ~~~~~~~ilItGa--sg~i--G~~l~~~l~~-~g~~v~~~~r~ 38 (246)
T PRK05653 1 MSLQGKTALVTGA--SRGI--GRAIALRLAA-DGAKVVIYDSN 38 (246)
T ss_pred CCCCCCEEEEECC--CcHH--HHHHHHHHHH-CCCEEEEEeCC
Confidence 4454455665532 2332 3678999999 99998777643
No 410
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=31.16 E-value=49 Score=30.81 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=28.4
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcc
Q 040467 5 KENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSN 45 (387)
Q Consensus 5 ~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~ 45 (387)
|.-|+++++|..|+-+-.-.+|.+|++ +|+-|..+-+.+.
T Consensus 99 ~~PvvIFSHGlgg~R~~yS~~~~eLAS-~GyVV~aieHrDg 138 (379)
T PF03403_consen 99 KFPVVIFSHGLGGSRTSYSAICGELAS-HGYVVAAIEHRDG 138 (379)
T ss_dssp -EEEEEEE--TT--TTTTHHHHHHHHH-TT-EEEEE---SS
T ss_pred CCCEEEEeCCCCcchhhHHHHHHHHHh-CCeEEEEeccCCC
Confidence 456999999999999999999999999 9999998877654
No 411
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=30.99 E-value=88 Score=26.37 Aligned_cols=41 Identities=24% Similarity=0.379 Sum_probs=30.5
Q ss_pred ccCCC-CCCeeEEEecCCCcCCCHHHHHHHHHHHHhCCCcEE
Q 040467 270 WLDTK-PCNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFI 310 (387)
Q Consensus 270 ~l~~~-~~~~~v~vs~GS~~~~~~~~~~~~~~a~~~~~~~~l 310 (387)
||++- +.+++||+..-.....+.++-..+..+|...|++++
T Consensus 13 fLdPV~~~~rtVyv~vrNTSd~~~~l~~~i~~~L~~kGY~vv 54 (215)
T PF05818_consen 13 FLDPVAPSQRTVYVQVRNTSDKDINLESQIISALQAKGYQVV 54 (215)
T ss_pred EeCCCCcccceEEEEEecCCCCccchHHHHHHHHHHCCCEEe
Confidence 66662 346799999987665555566679999999999876
No 412
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=30.75 E-value=78 Score=30.87 Aligned_cols=27 Identities=11% Similarity=0.170 Sum_probs=22.1
Q ss_pred CCeEEEeCCCchhhHHHHHHhCCceEEEcc
Q 040467 117 KPVCIIADMFFAWSAEIAQEYGIFNALFVG 146 (387)
Q Consensus 117 ~pD~vV~D~~~~~~~~~a~~lgiP~v~~~~ 146 (387)
+||+||.+. ....+|+++|||++.+..
T Consensus 364 ~pdliiG~~---~er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 364 EPELVLGTQ---MERHSAKRLDIPCGVISA 390 (511)
T ss_pred CCCEEEECh---HHHHHHHHcCCCEEEecC
Confidence 799999987 356678999999988743
No 413
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=30.52 E-value=96 Score=23.87 Aligned_cols=36 Identities=25% Similarity=0.200 Sum_probs=29.8
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCc-EEEEEe
Q 040467 5 KENIVMFPLMAQGHTIPFLALALHLENTNRY-TITFVN 41 (387)
Q Consensus 5 ~~~il~~~~~~~GH~~P~l~la~~L~~~rGh-~Vt~~~ 41 (387)
+.+++.++.-..+|..-+-.++++|++ +|. ++.++.
T Consensus 53 ~adii~iSsl~~~~~~~~~~~~~~L~~-~g~~~i~viv 89 (132)
T TIGR00640 53 DVHVVGVSSLAGGHLTLVPALRKELDK-LGRPDILVVV 89 (132)
T ss_pred CCCEEEEcCchhhhHHHHHHHHHHHHh-cCCCCCEEEE
Confidence 467888888888999999999999999 886 555554
No 414
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=30.46 E-value=79 Score=30.84 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=21.4
Q ss_pred CCeEEEeCCCchhhHHHHHHhCCceEEEc
Q 040467 117 KPVCIIADMFFAWSAEIAQEYGIFNALFV 145 (387)
Q Consensus 117 ~pD~vV~D~~~~~~~~~a~~lgiP~v~~~ 145 (387)
+||+|+.+.+ ...+|+++|||++.++
T Consensus 374 ~pdliiGs~~---er~ia~~lgiP~~~is 399 (513)
T CHL00076 374 EPSAIFGTQM---ERHIGKRLDIPCGVIS 399 (513)
T ss_pred CCCEEEECch---hhHHHHHhCCCEEEee
Confidence 8999999874 4556899999998874
No 415
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=30.44 E-value=2.3e+02 Score=25.88 Aligned_cols=28 Identities=18% Similarity=0.017 Sum_probs=21.9
Q ss_pred CCeEEEeCCCchhhHHHHHHhCCceEEEcc
Q 040467 117 KPVCIIADMFFAWSAEIAQEYGIFNALFVG 146 (387)
Q Consensus 117 ~pD~vV~D~~~~~~~~~a~~lgiP~v~~~~ 146 (387)
+-|++|.. ..+...+|..+|+|.|.++.
T Consensus 262 ~a~l~v~n--DSGp~HlAaA~g~P~v~lfG 289 (352)
T PRK10422 262 HAQLFIGV--DSAPAHIAAAVNTPLICLFG 289 (352)
T ss_pred hCCEEEec--CCHHHHHHHHcCCCEEEEEC
Confidence 45888865 45677889999999998863
No 416
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=30.29 E-value=60 Score=28.87 Aligned_cols=35 Identities=9% Similarity=0.077 Sum_probs=28.1
Q ss_pred CCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeC
Q 040467 2 AQRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNT 42 (387)
Q Consensus 2 ~~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~ 42 (387)
||+-.+|.|+-.+..|. .+|..|++ +||+|+++..
T Consensus 1 ~~~~~kI~vIGaG~mG~-----~iA~~la~-~G~~V~l~d~ 35 (292)
T PRK07530 1 MMAIKKVGVIGAGQMGN-----GIAHVCAL-AGYDVLLNDV 35 (292)
T ss_pred CCCCCEEEEECCcHHHH-----HHHHHHHH-CCCeEEEEeC
Confidence 34456799998888875 47888999 9999999864
No 417
>PF01995 DUF128: Domain of unknown function DUF128; InterPro: IPR002846 These archaebacterial proteins have no known function. The domain is found duplicated in some sequences.; PDB: 3NEK_B.
Probab=30.17 E-value=1.6e+02 Score=25.32 Aligned_cols=75 Identities=21% Similarity=0.260 Sum_probs=47.3
Q ss_pred CeeEEEecCCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEeccccCHHH
Q 040467 277 NSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQKWAPQVE 356 (387)
Q Consensus 277 ~~~v~vs~GS~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~ 356 (387)
.+.|+.+|-.......+.++.+++.+++.+..-++.++.+. +.+ - ++-+
T Consensus 145 ~G~ilAn~ReiP~~a~e~~~~il~~l~~~g~~Gil~iG~p~-----------~~v-l-----------gvpv-------- 193 (236)
T PF01995_consen 145 EGKILANFREIPMSAREKAEEILEKLEKAGFSGILEIGEPN-----------EPV-L-----------GVPV-------- 193 (236)
T ss_dssp SSEEEEEEEEEETTTHHHHHHHHHHH---T-TTEEEE--TT-------------B-T-----------TB----------
T ss_pred CceEeeeeecCchhHHHHHHHHHHHhhhcccceeEEeCCCC-----------Ccc-c-----------CCcc--------
Confidence 56899999888888899999999999999999999998763 111 0 1112
Q ss_pred hhCccCcceeeeccChhHHHHHHHcCCcc
Q 040467 357 ILSHKSISAFLSHCGWNSVLEALSHRVPI 385 (387)
Q Consensus 357 lL~~~~~~~~v~HGG~~s~~eal~~GvP~ 385 (387)
......++.=||.|-++-+.-+|.|+
T Consensus 194 ---~~~~~Giv~~GG~Npia~~~E~Gi~i 219 (236)
T PF01995_consen 194 ---EPGMVGIVVIGGLNPIAAAVEAGIPI 219 (236)
T ss_dssp ----TTEEEEEEE-TTHHHHHHHHTT---
T ss_pred ---CCCeEEEEEEecCcHHHHHHHcCCee
Confidence 11133477779999999999999875
No 418
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=30.12 E-value=86 Score=29.75 Aligned_cols=26 Identities=15% Similarity=0.082 Sum_probs=22.2
Q ss_pred CCeEEEeCCCchhhHHHHHHhCCceEEEc
Q 040467 117 KPVCIIADMFFAWSAEIAQEYGIFNALFV 145 (387)
Q Consensus 117 ~pD~vV~D~~~~~~~~~a~~lgiP~v~~~ 145 (387)
+||+||.+.. ...+|+++|+|++.+.
T Consensus 371 ~pdliig~~~---~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 371 PVDLLIGNSH---GRYLARDLGIPLVRVG 396 (428)
T ss_pred CCCEEEECch---hHHHHHhcCCCEEEec
Confidence 8999999975 4688999999998764
No 419
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=30.04 E-value=1.1e+02 Score=26.65 Aligned_cols=45 Identities=16% Similarity=0.148 Sum_probs=38.2
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
--+++.-.|..|...-.++++.+.++ +|..|.+++.++....+.+
T Consensus 24 ~~~lI~G~pGsGKT~f~~qfl~~~~~-~ge~vlyvs~~e~~~~l~~ 68 (260)
T COG0467 24 SVVLITGPPGTGKTIFALQFLYEGAR-EGEPVLYVSTEESPEELLE 68 (260)
T ss_pred cEEEEEcCCCCcHHHHHHHHHHHHHh-cCCcEEEEEecCCHHHHHH
Confidence 35778888999999999999999999 9999999998776554443
No 420
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=29.84 E-value=2e+02 Score=26.13 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=31.7
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcc
Q 040467 8 IVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSN 45 (387)
Q Consensus 8 il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~ 45 (387)
+.++..++.|-.+-.+.++.+.++ +|..+.|+.++..
T Consensus 58 teI~Gp~GsGKTtLal~~~~~~~~-~g~~~vyId~E~~ 94 (325)
T cd00983 58 IEIYGPESSGKTTLALHAIAEAQK-LGGTVAFIDAEHA 94 (325)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-cCCCEEEECcccc
Confidence 456667799999999999999999 9999999987663
No 421
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=29.67 E-value=3.6e+02 Score=23.02 Aligned_cols=42 Identities=7% Similarity=-0.076 Sum_probs=34.4
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKL 49 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~ 49 (387)
-+++...|+.|-..-.+.++.+-.+ +|..+.+++.+...+.+
T Consensus 23 ~~lI~G~pGsGKT~la~~~l~~~~~-~ge~~lyvs~ee~~~~i 64 (237)
T TIGR03877 23 VVLLSGGPGTGKSIFSQQFLWNGLQ-MGEPGIYVALEEHPVQV 64 (237)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH-cCCcEEEEEeeCCHHHH
Confidence 4777888899999999998887778 99999999987755443
No 422
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=29.56 E-value=1.1e+02 Score=29.28 Aligned_cols=41 Identities=17% Similarity=0.232 Sum_probs=35.9
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchh
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLK 47 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~ 47 (387)
..|+|+..++.|-..-...||..|.+ .|+.|.+++...++.
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~-~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKK-KGLKVGLVAADTYRP 136 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEecCCCCCH
Confidence 35777888899999999999999999 999999999877655
No 423
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=29.55 E-value=2.6e+02 Score=24.40 Aligned_cols=31 Identities=19% Similarity=0.179 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 20 IPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 20 ~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
.-+..|++.|.+ +|++|.++..++..+..++
T Consensus 140 ~~~~~l~~~l~~-~~~~ivl~g~~~e~~~~~~ 170 (279)
T cd03789 140 ERFAALADRLLA-RGARVVLTGGPAERELAEE 170 (279)
T ss_pred HHHHHHHHHHHH-CCCEEEEEechhhHHHHHH
Confidence 458899999999 8999999987776555544
No 424
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=29.48 E-value=2.9e+02 Score=25.12 Aligned_cols=28 Identities=14% Similarity=0.069 Sum_probs=22.6
Q ss_pred CCeEEEeCCCchhhHHHHHHhCCceEEEcc
Q 040467 117 KPVCIIADMFFAWSAEIAQEYGIFNALFVG 146 (387)
Q Consensus 117 ~pD~vV~D~~~~~~~~~a~~lgiP~v~~~~ 146 (387)
+-|++|.- ..+...+|..+|+|.|.++.
T Consensus 260 ~a~l~Vs~--DSGp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 260 HARLFIGV--DSVPMHMAAALGTPLVALFG 287 (344)
T ss_pred hCCEEEec--CCHHHHHHHHcCCCEEEEEC
Confidence 45888876 56778999999999999853
No 425
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=29.43 E-value=1e+02 Score=26.76 Aligned_cols=35 Identities=14% Similarity=0.169 Sum_probs=30.9
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeC
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNT 42 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~ 42 (387)
.|+|+.=|+.|-..-...||..|++ +|++|.++=.
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~-~G~kVlliD~ 37 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAE-MGKKVMIVGC 37 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHh-CCCeEEEEEc
Confidence 4777766899999999999999999 9999999843
No 426
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=29.37 E-value=97 Score=27.87 Aligned_cols=28 Identities=11% Similarity=-0.108 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEcCCC
Q 040467 290 IAASQMMQLAMALEACGKNFIWVVKPPL 317 (387)
Q Consensus 290 ~~~~~~~~~~~a~~~~~~~~l~~~~~~~ 317 (387)
.+.+..+.+.+|+.+.+.+.||.+.++.
T Consensus 50 ~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~ 77 (308)
T cd07062 50 SPEERAEELMAAFADPSIKAIIPTIGGD 77 (308)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEECCccc
Confidence 4456677799999999999999998775
No 427
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=29.37 E-value=2.6e+02 Score=25.39 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=31.8
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcc
Q 040467 8 IVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSN 45 (387)
Q Consensus 8 il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~ 45 (387)
+.++..++.|-.+-.+.++.+.++ .|..|.|+..+..
T Consensus 58 teI~G~~GsGKTtLaL~~~~~~~~-~g~~v~yId~E~~ 94 (321)
T TIGR02012 58 IEIYGPESSGKTTLALHAIAEAQK-AGGTAAFIDAEHA 94 (321)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEEcccch
Confidence 556677799999999999999999 9999999987654
No 428
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=29.33 E-value=1.1e+02 Score=26.43 Aligned_cols=34 Identities=18% Similarity=0.100 Sum_probs=28.9
Q ss_pred EEEEEcC-CCcccHHHHHHHHHHHHhCCCcEEEEEe
Q 040467 7 NIVMFPL-MAQGHTIPFLALALHLENTNRYTITFVN 41 (387)
Q Consensus 7 ~il~~~~-~~~GH~~P~l~la~~L~~~rGh~Vt~~~ 41 (387)
.|++... |+.|-..-.-+||..|++ .|++|..+=
T Consensus 3 ~iai~s~kGGvG~TTltAnLA~aL~~-~G~~VlaID 37 (243)
T PF06564_consen 3 VIAIVSPKGGVGKTTLTANLAWALAR-LGESVLAID 37 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHH-CCCcEEEEe
Confidence 3555555 788999999999999999 999999884
No 429
>PLN02891 IMP cyclohydrolase
Probab=29.16 E-value=1.5e+02 Score=28.83 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=34.7
Q ss_pred cHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCC
Q 040467 18 HTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCT 77 (387)
Q Consensus 18 H~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 77 (387)
+=.-+..+|+.|.+ .|.+ ++++......+++ .|+....+.- ..++|+..
T Consensus 31 DKtgi~~fAk~L~~-~gve--IiSTgGTak~L~e-----~Gi~v~~Vsd---~TgfPEiL 79 (547)
T PLN02891 31 DKTDLALLANGLQE-LGYT--IVSTGGTASALEA-----AGVSVTKVEE---LTNFPEML 79 (547)
T ss_pred cccCHHHHHHHHHH-CCCE--EEEcchHHHHHHH-----cCCceeeHHh---ccCCchhh
Confidence 33457899999999 7755 5677888889999 7777777652 24555543
No 430
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=29.10 E-value=80 Score=29.84 Aligned_cols=32 Identities=22% Similarity=0.170 Sum_probs=26.0
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeC
Q 040467 5 KENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNT 42 (387)
Q Consensus 5 ~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~ 42 (387)
.++|.|+-.+..| +.+|..|++ +||+|+.+-.
T Consensus 3 ~~kI~VIGlG~~G-----~~~A~~La~-~G~~V~~~D~ 34 (415)
T PRK11064 3 FETISVIGLGYIG-----LPTAAAFAS-RQKQVIGVDI 34 (415)
T ss_pred ccEEEEECcchhh-----HHHHHHHHh-CCCEEEEEeC
Confidence 4579998777666 578999999 9999998854
No 431
>PLN02293 adenine phosphoribosyltransferase
Probab=28.98 E-value=1.9e+02 Score=23.84 Aligned_cols=28 Identities=11% Similarity=-0.039 Sum_probs=20.9
Q ss_pred CCeEEEe-CCCch-hhHHHHHHhCCceEEE
Q 040467 117 KPVCIIA-DMFFA-WSAEIAQEYGIFNALF 144 (387)
Q Consensus 117 ~pD~vV~-D~~~~-~~~~~a~~lgiP~v~~ 144 (387)
++|+|+. +.-.. .+..+|..+|+|++.+
T Consensus 62 ~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~ 91 (187)
T PLN02293 62 GISVVAGIEARGFIFGPPIALAIGAKFVPL 91 (187)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHCCCEEEE
Confidence 6888884 43333 6788999999998765
No 432
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=28.97 E-value=4.2e+02 Score=23.60 Aligned_cols=108 Identities=7% Similarity=-0.010 Sum_probs=0.0
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEe-CCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCC
Q 040467 3 QRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVN-TPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSD 81 (387)
Q Consensus 3 ~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 81 (387)
.+++||+++.++..+.+..++.-.+.=.. ...-+.+++ .++.....++ .++.+..++......
T Consensus 87 ~~~~ri~vl~Sg~g~nl~al~~~~~~~~~-~~~i~~visn~~~~~~lA~~-----~gIp~~~~~~~~~~~---------- 150 (286)
T PRK13011 87 AARPKVLIMVSKFDHCLNDLLYRWRIGEL-PMDIVGVVSNHPDLEPLAAW-----HGIPFHHFPITPDTK---------- 150 (286)
T ss_pred ccCceEEEEEcCCcccHHHHHHHHHcCCC-CcEEEEEEECCccHHHHHHH-----hCCCEEEeCCCcCch----------
Q ss_pred CCCCCchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCch-hhHHHHHHhCCceEEEcch
Q 040467 82 SLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFA-WSAEIAQEYGIFNALFVGG 147 (387)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~-~~~~~a~~lgiP~v~~~~~ 147 (387)
......+.+.+++. ++|+||.-.+.. ....+-+.+.-..+-+.++
T Consensus 151 --------------~~~~~~~~~~l~~~-------~~Dlivlagy~~il~~~~l~~~~~~iiNiHpS 196 (286)
T PRK13011 151 --------------PQQEAQVLDVVEES-------GAELVVLARYMQVLSPELCRKLAGRAINIHHS 196 (286)
T ss_pred --------------hhhHHHHHHHHHHh-------CcCEEEEeChhhhCCHHHHhhccCCeEEeccc
No 433
>PRK08939 primosomal protein DnaI; Reviewed
Probab=28.82 E-value=68 Score=28.85 Aligned_cols=45 Identities=18% Similarity=0.340 Sum_probs=38.2
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
..+++...++.|-..=+.++|.+|.+ +|..|+|+..+.+...+..
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~-~g~~v~~~~~~~l~~~lk~ 201 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAK-KGVSSTLLHFPEFIRELKN 201 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH-cCCCEEEEEHHHHHHHHHH
Confidence 35888888999999999999999999 9999999988766555554
No 434
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=28.65 E-value=4.1e+02 Score=23.40 Aligned_cols=107 Identities=13% Similarity=0.072 Sum_probs=57.9
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCCCCC
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSLPFH 86 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (387)
=|++...|+.|-..-...|++.|.+ .|.+|.++..+... +.. .. +..-
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~-~~~~v~~i~~~~~~--~~~-----~~--y~~~---------------------- 50 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEE-KGKEVVIISDDSLG--IDR-----ND--YADS---------------------- 50 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHH-TT--EEEE-THHHH---TT-----SS--S--G----------------------
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh-cCCEEEEEcccccc--cch-----hh--hhch----------------------
Confidence 4788889999999999999999999 99999999743222 111 00 1000
Q ss_pred chhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCch-hh-----HHHHHHhCCceEEEcchhHHHHHHHH
Q 040467 87 LFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFA-WS-----AEIAQEYGIFNALFVGGGSFGFACFY 156 (387)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~-~~-----~~~a~~lgiP~v~~~~~~~~~~~~~~ 156 (387)
..+ ......++..+++... +-++||+|...+ -+ .-+|+..+.+++.++.......+...
T Consensus 51 ~~E------k~~R~~l~s~v~r~ls-----~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~ 115 (270)
T PF08433_consen 51 KKE------KEARGSLKSAVERALS-----KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQR 115 (270)
T ss_dssp GGH------HHHHHHHHHHHHHHHT-----T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHH
T ss_pred hhh------HHHHHHHHHHHHHhhc-----cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHh
Confidence 001 1223334444444322 348999999886 22 37899999999987766655544433
No 435
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=28.58 E-value=1.4e+02 Score=23.90 Aligned_cols=41 Identities=10% Similarity=0.003 Sum_probs=26.9
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEEeCCc-chhhhhhcCCCCCCeeEEecc
Q 040467 16 QGHTIPFLALALHLENTNRYTITFVNTPS-NLKKLKSSLPQNSSIHLREIP 65 (387)
Q Consensus 16 ~GH~~P~l~la~~L~~~rGh~Vt~~~~~~-~~~~~~~~~~~~~~i~~~~~~ 65 (387)
-|++ .+|+.+|++ +|.+|.+++.+. ....+.+ .-=+|+.+.
T Consensus 115 D~DF---~~Lv~~lre-~G~~V~v~g~~~~ts~~L~~-----acd~FI~L~ 156 (160)
T TIGR00288 115 DADF---LPVINKAKE-NGKETIVIGAEPGFSTALQN-----SADIAIILG 156 (160)
T ss_pred cHhH---HHHHHHHHH-CCCEEEEEeCCCCChHHHHH-----hcCeEEeCC
Confidence 3554 457888999 999999999654 3334444 222577665
No 436
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=28.21 E-value=17 Score=18.47 Aligned_cols=16 Identities=25% Similarity=0.628 Sum_probs=12.6
Q ss_pred ChhHHHHHHHcCCccc
Q 040467 371 GWNSVLEALSHRVPII 386 (387)
Q Consensus 371 G~~s~~eal~~GvP~l 386 (387)
|.|++.-.|+.|.|.+
T Consensus 1 gIGa~Lkvla~~LP~l 16 (26)
T PF01372_consen 1 GIGAILKVLATGLPTL 16 (26)
T ss_dssp -HHHHHHHHHTHHHHH
T ss_pred ChhHHHHHHHhcChHH
Confidence 6788999999888865
No 437
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=28.19 E-value=86 Score=28.43 Aligned_cols=33 Identities=15% Similarity=0.111 Sum_probs=27.8
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCC
Q 040467 5 KENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTP 43 (387)
Q Consensus 5 ~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~ 43 (387)
.++|.|+-.+..| ..+|..|++ +||+|+++...
T Consensus 4 ~m~I~iIG~G~mG-----~~ia~~L~~-~G~~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLGAGAWG-----TALAVLAAS-KGVPVRLWARR 36 (328)
T ss_pred CCeEEEECcCHHH-----HHHHHHHHH-CCCeEEEEeCC
Confidence 3479999998888 468999999 99999999763
No 438
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=27.98 E-value=2.5e+02 Score=20.67 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=24.0
Q ss_pred eeEEEecCCCcCCCHHHHHHHHHHHHh-CC-CcEEEEE
Q 040467 278 SVIYVSFGSQNTIAASQMMQLAMALEA-CG-KNFIWVV 313 (387)
Q Consensus 278 ~~v~vs~GS~~~~~~~~~~~~~~a~~~-~~-~~~l~~~ 313 (387)
.+|+++.||......+.++++.+.+++ .+ ..+-+.+
T Consensus 2 a~llv~HGS~~~~~~~~~~~l~~~l~~~~~~~~v~~af 39 (117)
T cd03414 2 AVVLVGRGSSDPDANADVAKIARLLEEGTGFARVETAF 39 (117)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 378899999765555677788888865 33 4444443
No 439
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=27.96 E-value=98 Score=28.89 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=31.2
Q ss_pred ccEEEEEcC--CCcccHHHHHHHHHHHHhCCCcEEEEEeCCc
Q 040467 5 KENIVMFPL--MAQGHTIPFLALALHLENTNRYTITFVNTPS 44 (387)
Q Consensus 5 ~~~il~~~~--~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~ 44 (387)
+++|+.+.. |+.|-..-.+.||..|++ +|++|.++=...
T Consensus 103 ~~~vI~v~n~KGGvGKTT~a~nLA~~La~-~G~rVLlID~Dp 143 (387)
T TIGR03453 103 HLQVIAVTNFKGGSGKTTTAAHLAQYLAL-RGYRVLAIDLDP 143 (387)
T ss_pred CceEEEEEccCCCcCHHHHHHHHHHHHHh-cCCCEEEEecCC
Confidence 445555544 688999999999999999 999999885443
No 440
>PRK13768 GTPase; Provisional
Probab=27.94 E-value=1.1e+02 Score=26.67 Aligned_cols=37 Identities=24% Similarity=0.295 Sum_probs=32.1
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCc
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPS 44 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~ 44 (387)
-+++...++.|-..-...++..|++ .|++|.++....
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~-~g~~v~~i~~D~ 40 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEE-QGYDVAIVNLDP 40 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHh-cCCceEEEECCC
Confidence 3777777899999999999999999 999999997543
No 441
>PRK06370 mercuric reductase; Validated
Probab=27.93 E-value=76 Score=30.41 Aligned_cols=35 Identities=9% Similarity=0.160 Sum_probs=30.2
Q ss_pred CCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEe
Q 040467 1 MAQRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVN 41 (387)
Q Consensus 1 ~~~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~ 41 (387)
|||++..|+++-.+..| +..|..|++ +|++|+++-
T Consensus 1 ~~~~~~DvvVIG~GpaG-----~~aA~~aa~-~G~~v~lie 35 (463)
T PRK06370 1 TPAQRYDAIVIGAGQAG-----PPLAARAAG-LGMKVALIE 35 (463)
T ss_pred CCCccccEEEECCCHHH-----HHHHHHHHh-CCCeEEEEe
Confidence 68888899999998766 567889999 999999994
No 442
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=27.92 E-value=1.3e+02 Score=26.40 Aligned_cols=37 Identities=8% Similarity=0.062 Sum_probs=29.4
Q ss_pred ccEEEEEcC--CCcccHHHHHHHHHHHHhCCCcEEEEEeC
Q 040467 5 KENIVMFPL--MAQGHTIPFLALALHLENTNRYTITFVNT 42 (387)
Q Consensus 5 ~~~il~~~~--~~~GH~~P~l~la~~L~~~rGh~Vt~~~~ 42 (387)
..+++.++. ++.|-..-.+.||..|++ .|++|.++=.
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~-~g~~VllID~ 140 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQ-LGEKTLLIDA 140 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHh-cCCeEEEEeC
Confidence 445655555 577888889999999999 9999998843
No 443
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=27.85 E-value=67 Score=28.54 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEcCCC
Q 040467 290 IAASQMMQLAMALEACGKNFIWVVKPPL 317 (387)
Q Consensus 290 ~~~~~~~~~~~a~~~~~~~~l~~~~~~~ 317 (387)
.+.+..+.+.+|+.+...+.||.+.++.
T Consensus 46 s~~~Ra~dL~~a~~d~~i~aI~~~rGGy 73 (284)
T PF02016_consen 46 SDEERAEDLNEAFADPEIDAIWCARGGY 73 (284)
T ss_dssp -HHHHHHHHHHHHHSTTEEEEEES--SS
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEeeccc
Confidence 3455677799999999999999988775
No 444
>PRK07454 short chain dehydrogenase; Provisional
Probab=27.85 E-value=1.3e+02 Score=25.55 Aligned_cols=38 Identities=13% Similarity=0.043 Sum_probs=25.9
Q ss_pred CCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeC
Q 040467 1 MAQRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNT 42 (387)
Q Consensus 1 ~~~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~ 42 (387)
|...+++.++++.+ .| .--..++++|.+ +|++|.++.-
T Consensus 1 ~~~~~~k~vlItG~-sg--~iG~~la~~l~~-~G~~V~~~~r 38 (241)
T PRK07454 1 MSLNSMPRALITGA-SS--GIGKATALAFAK-AGWDLALVAR 38 (241)
T ss_pred CCCCCCCEEEEeCC-Cc--hHHHHHHHHHHH-CCCEEEEEeC
Confidence 43445556666543 34 234678999999 9999998874
No 445
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=27.81 E-value=92 Score=25.89 Aligned_cols=30 Identities=20% Similarity=0.180 Sum_probs=22.5
Q ss_pred CCeEEE-eCCCch-hhHHHHHHhCCceEEEcc
Q 040467 117 KPVCII-ADMFFA-WSAEIAQEYGIFNALFVG 146 (387)
Q Consensus 117 ~pD~vV-~D~~~~-~~~~~a~~lgiP~v~~~~ 146 (387)
.||+|| .|+..- -+..=|.++|||.|.+.-
T Consensus 108 ~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~D 139 (196)
T TIGR01012 108 EPEVVVVTDPRADHQALKEASEVGIPIVALCD 139 (196)
T ss_pred CCCEEEEECCccccHHHHHHHHcCCCEEEEee
Confidence 587655 677665 666778899999999854
No 446
>PRK09072 short chain dehydrogenase; Provisional
Probab=27.72 E-value=1.3e+02 Score=25.94 Aligned_cols=19 Identities=26% Similarity=0.190 Sum_probs=16.7
Q ss_pred HHHHHHHHhCCCcEEEEEeC
Q 040467 23 LALALHLENTNRYTITFVNT 42 (387)
Q Consensus 23 l~la~~L~~~rGh~Vt~~~~ 42 (387)
..+++.|.+ +|++|+++.-
T Consensus 19 ~~ia~~l~~-~G~~V~~~~r 37 (263)
T PRK09072 19 QALAEALAA-AGARLLLVGR 37 (263)
T ss_pred HHHHHHHHH-CCCEEEEEEC
Confidence 788999999 9999998864
No 447
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=27.65 E-value=2.8e+02 Score=27.46 Aligned_cols=88 Identities=10% Similarity=0.122 Sum_probs=47.0
Q ss_pred ecCCCcCCCH-HHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCcEEecc--------ccC
Q 040467 283 SFGSQNTIAA-SQMMQLAMALEACGKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKDSGQGLVVQK--------WAP 353 (387)
Q Consensus 283 s~GS~~~~~~-~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~p 353 (387)
|-||...... ...+.+++.|++.|.+.+..+.+.. . ..+...+.. .+++.+.. ++-
T Consensus 3 ~~~~~~~~~~~~~~~~l~~~L~~~GV~~vFgvpG~~-------------~-~~l~dal~~-~~~i~~i~~~hE~~A~~~A 67 (564)
T PRK08155 3 SSGTTSTRKRFTGAELIVRLLERQGIRIVTGIPGGA-------------I-LPLYDALSQ-STQIRHILARHEQGAGFIA 67 (564)
T ss_pred CCCCCccCCcccHHHHHHHHHHHcCCCEEEeCCCcc-------------c-HHHHHHHhc-cCCceEEEeccHHHHHHHH
Confidence 3455443333 3466688888888888888776653 0 112222210 11221111 000
Q ss_pred --HHHhhCccCcceeeeccC------hhHHHHHHHcCCcccC
Q 040467 354 --QVEILSHKSISAFLSHCG------WNSVLEALSHRVPIIG 387 (387)
Q Consensus 354 --q~~lL~~~~~~~~v~HGG------~~s~~eal~~GvP~l~ 387 (387)
+..+-.. .+++++|.| .+++.||-..++|+|+
T Consensus 68 dgyar~tg~--~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~ 107 (564)
T PRK08155 68 QGMARTTGK--PAVCMACSGPGATNLVTAIADARLDSIPLVC 107 (564)
T ss_pred HHHHHHcCC--CeEEEECCCCcHHHHHHHHHHHHhcCCCEEE
Confidence 2222234 345777766 4488999999999984
No 448
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=27.60 E-value=1.5e+02 Score=25.06 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=20.2
Q ss_pred EEEEEcCCCccc--HHHHHHHHHHHHh
Q 040467 7 NIVMFPLMAQGH--TIPFLALALHLEN 31 (387)
Q Consensus 7 ~il~~~~~~~GH--~~P~l~la~~L~~ 31 (387)
+||+..+.-+|. .||...++++|..
T Consensus 3 ~ILvTGF~PF~~~~~NPS~~~~~~L~~ 29 (211)
T PRK13196 3 TLLLTGFEPFHTHPVNPSAQAAQALNG 29 (211)
T ss_pred EEEEEeecCCCCCCCCcHHHHHHhccc
Confidence 588888865554 8999999999977
No 449
>PRK13695 putative NTPase; Provisional
Probab=27.53 E-value=2.9e+02 Score=22.05 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=28.6
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEE
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENTNRYTIT 38 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt 38 (387)
|+|+++-.++.|-..-+..++..|.. +|+.+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l~~-~G~~~~ 32 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELLKE-EGYKVG 32 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEE
Confidence 46999999999999999999999999 998875
No 450
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=27.39 E-value=1e+02 Score=28.98 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=31.2
Q ss_pred ccEEEEEcC--CCcccHHHHHHHHHHHHhCCCcEEEEEeCCc
Q 040467 5 KENIVMFPL--MAQGHTIPFLALALHLENTNRYTITFVNTPS 44 (387)
Q Consensus 5 ~~~il~~~~--~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~ 44 (387)
+++|+.+.. |+.|-..-.+.||..|+. +|++|.++=...
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~-~G~rVLlIDlDp 160 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLAL-QGYRVLAVDLDP 160 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHh-cCCceEEEcCCC
Confidence 345555554 789999999999999999 999999884433
No 451
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=27.35 E-value=4.8e+02 Score=23.82 Aligned_cols=41 Identities=15% Similarity=0.138 Sum_probs=35.3
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcch
Q 040467 5 KENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNL 46 (387)
Q Consensus 5 ~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~ 46 (387)
...|.+...|+.|-..-.-.|+..|.+ +|+.|.+++.....
T Consensus 56 ~~~igi~G~~GaGKSTl~~~l~~~l~~-~g~~v~vi~~Dp~s 96 (332)
T PRK09435 56 ALRIGITGVPGVGKSTFIEALGMHLIE-QGHKVAVLAVDPSS 96 (332)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEEeCCCc
Confidence 346888888999999999999999999 99999999866543
No 452
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=27.26 E-value=88 Score=28.40 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=28.6
Q ss_pred CCcEEeccccCHHHhhCc--cCcceeeecc--------Ch------hHHHHHHHcCCcccC
Q 040467 343 GQGLVVQKWAPQVEILSH--KSISAFLSHC--------GW------NSVLEALSHRVPIIG 387 (387)
Q Consensus 343 ~~~v~~~~~~pq~~lL~~--~~~~~~v~HG--------G~------~s~~eal~~GvP~l~ 387 (387)
.+||.+.+|+|++++..+ .+.+ +|.-+ .+ +-+.+++++|+|+|+
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~~~g-Lv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~ 265 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSKGFG-LVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIV 265 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhcCcC-eEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEE
Confidence 568999999998876543 1332 22221 11 227778999999985
No 453
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=27.23 E-value=41 Score=28.72 Aligned_cols=21 Identities=10% Similarity=0.006 Sum_probs=18.7
Q ss_pred eeeeccChhHHHHHHHcCCcc
Q 040467 365 AFLSHCGWNSVLEALSHRVPI 385 (387)
Q Consensus 365 ~~v~HGG~~s~~eal~~GvP~ 385 (387)
++|+|||...+.-+...|.|.
T Consensus 178 lvVsHg~vir~ll~~~~~~~~ 198 (228)
T PRK14116 178 IIAAHGNSLRALTKYIENISD 198 (228)
T ss_pred EEEcChHHHHHHHHHHhCCCH
Confidence 599999999999998888874
No 454
>PLN00016 RNA-binding protein; Provisional
Probab=27.20 E-value=77 Score=29.39 Aligned_cols=35 Identities=11% Similarity=0.100 Sum_probs=23.8
Q ss_pred cEEEEEcC--CCcccHHHHHHHHHHHHhCCCcEEEEEeCC
Q 040467 6 ENIVMFPL--MAQGHTIPFLALALHLENTNRYTITFVNTP 43 (387)
Q Consensus 6 ~~il~~~~--~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~ 43 (387)
++|+++.. |+.|.+ -..|+++|.+ +||+|+.++-.
T Consensus 53 ~~VLVt~~~~GatG~i--G~~lv~~L~~-~G~~V~~l~R~ 89 (378)
T PLN00016 53 KKVLIVNTNSGGHAFI--GFYLAKELVK-AGHEVTLFTRG 89 (378)
T ss_pred ceEEEEeccCCCceeE--hHHHHHHHHH-CCCEEEEEecC
Confidence 46777722 223332 3578899999 99999998743
No 455
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=27.19 E-value=75 Score=29.20 Aligned_cols=34 Identities=12% Similarity=-0.043 Sum_probs=27.7
Q ss_pred EEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCC
Q 040467 10 MFPLMAQGHTIPFLALALHLENTNRYTITFVNTP 43 (387)
Q Consensus 10 ~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~ 43 (387)
.-.+-=+|+|-...+||+.|++.+|++|++.+..
T Consensus 5 C~VIDNyGDIGV~WRLArqLa~e~g~~VrLwvDd 38 (371)
T TIGR03837 5 CRVVDNYGDIGVCWRLARQLAAEHGHQVRLWVDD 38 (371)
T ss_pred EEeecCCcchHHHHHHHHHHHHHhCCEEEEEECC
Confidence 3344568999999999999996469999999853
No 456
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=27.15 E-value=1.5e+02 Score=26.29 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=19.6
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCc
Q 040467 22 FLALALHLENTNRYTITFVNTPS 44 (387)
Q Consensus 22 ~l~la~~L~~~rGh~Vt~~~~~~ 44 (387)
.+.+++.|.+ .|++|.++..+.
T Consensus 13 ~~~~~~~l~~-~g~~v~~~g~~~ 34 (287)
T TIGR02853 13 QLELIRKLEE-LDAKISLIGFDQ 34 (287)
T ss_pred HHHHHHHHHH-CCCEEEEEeccc
Confidence 5789999999 999999998763
No 457
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=27.12 E-value=4.6e+02 Score=23.53 Aligned_cols=31 Identities=16% Similarity=-0.023 Sum_probs=22.8
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeC
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNT 42 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~ 42 (387)
|||+|+..+. -.+...++|.+ +||+|..+.+
T Consensus 1 mkIvf~G~~~-----~a~~~L~~L~~-~~~~i~~Vvt 31 (309)
T PRK00005 1 MRIVFMGTPE-----FAVPSLKALLE-SGHEVVAVVT 31 (309)
T ss_pred CEEEEECCCH-----HHHHHHHHHHH-CCCcEEEEEC
Confidence 4688886554 34677888999 8999886654
No 458
>PRK08181 transposase; Validated
Probab=27.02 E-value=82 Score=27.73 Aligned_cols=44 Identities=25% Similarity=0.369 Sum_probs=36.1
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhh
Q 040467 5 KENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKL 49 (387)
Q Consensus 5 ~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~ 49 (387)
+.+++|+..++.|-..=..++|.++.+ +|+.|.|++..+....+
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~-~g~~v~f~~~~~L~~~l 149 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIE-NGWRVLFTRTTDLVQKL 149 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHH-cCCceeeeeHHHHHHHH
Confidence 456889988999999999999999999 99999998765544444
No 459
>PRK12377 putative replication protein; Provisional
Probab=26.89 E-value=91 Score=27.07 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=37.3
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
..++|...++.|-..=..++|.+|.+ .|+.|.+++.++....+..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~-~g~~v~~i~~~~l~~~l~~ 146 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLA-KGRSVIVVTVPDVMSRLHE 146 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH-cCCCeEEEEHHHHHHHHHH
Confidence 35888888999999999999999999 9999999887665555444
No 460
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=26.85 E-value=82 Score=23.01 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCCcchhhhhh
Q 040467 20 IPFLALALHLENTNRYTITFVNTPSNLKKLKS 51 (387)
Q Consensus 20 ~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (387)
.|.+.|+++|.+ +|.+|.+.=+-........
T Consensus 17 Sp~~~l~~~L~~-~g~~V~~~DP~v~~~~~~~ 47 (106)
T PF03720_consen 17 SPALELIEELKE-RGAEVSVYDPYVDEEEIKE 47 (106)
T ss_dssp -HHHHHHHHHHH-TT-EEEEE-TTSHHHHHHH
T ss_pred CHHHHHHHHHHH-CCCEEEEECCccChHHHHh
Confidence 689999999999 9999998855444444433
No 461
>PRK06526 transposase; Provisional
Probab=26.78 E-value=51 Score=28.73 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=36.1
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhh
Q 040467 5 KENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKL 49 (387)
Q Consensus 5 ~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~ 49 (387)
+.+++++..++.|-..=..+|+.++.+ +|+.|.|.+.....+.+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~-~g~~v~f~t~~~l~~~l 141 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQ-AGHRVLFATAAQWVARL 141 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHH-CCCchhhhhHHHHHHHH
Confidence 457899999999999999999999999 99999887665443333
No 462
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=26.70 E-value=2.1e+02 Score=22.83 Aligned_cols=48 Identities=8% Similarity=0.039 Sum_probs=34.8
Q ss_pred HHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchh---------------hHHHHHHhCCceEEEcch
Q 040467 93 ESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAW---------------SAEIAQEYGIFNALFVGG 147 (387)
Q Consensus 93 ~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~---------------~~~~a~~lgiP~v~~~~~ 147 (387)
+.+..+.+.+.+++++. +||.+..+..++. ...++.+.|+|..-++|.
T Consensus 40 ~RL~~I~~~l~~~i~~y-------~P~~~aiE~~F~~~N~~sa~~lg~arGvilla~~~~~ipv~Ey~P~ 102 (156)
T TIGR00228 40 SRLKLIYAGVTEIITQF-------QPNYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAAR 102 (156)
T ss_pred HHHHHHHHHHHHHHHHh-------CCCEEEEeHHhhccCHHHHHHHHHHHHHHHHHHHHcCCCEEEECHH
Confidence 44456777888899888 9999888877662 135566778998877653
No 463
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=26.66 E-value=1.3e+02 Score=26.35 Aligned_cols=34 Identities=6% Similarity=0.046 Sum_probs=29.2
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEe
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVN 41 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~ 41 (387)
.|.+.-=|+.|-..-..+||..|++ +|++|.++=
T Consensus 4 iIav~~KGGVGKTT~~~nLA~~la~-~G~kVLliD 37 (270)
T PRK13185 4 VLAVYGKGGIGKSTTSSNLSAAFAK-LGKKVLQIG 37 (270)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEe
Confidence 3555555789999999999999999 999999884
No 464
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=26.59 E-value=1.9e+02 Score=26.90 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEcCC
Q 040467 292 ASQMMQLAMALEACGKNFIWVVKPP 316 (387)
Q Consensus 292 ~~~~~~~~~a~~~~~~~~l~~~~~~ 316 (387)
+.+++.+.++|.+.|+.+.+.+..+
T Consensus 10 p~~~~~la~~L~~~G~~v~~~~~~~ 34 (396)
T cd03818 10 PGQFRHLAPALAAQGHEVVFLTEPN 34 (396)
T ss_pred chhHHHHHHHHHHCCCEEEEEecCC
Confidence 5678899999999999988877655
No 465
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=26.54 E-value=2.3e+02 Score=25.75 Aligned_cols=98 Identities=16% Similarity=0.185 Sum_probs=58.6
Q ss_pred cEEEEEcCCCcc-----cHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCC
Q 040467 6 ENIVMFPLMAQG-----HTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENS 80 (387)
Q Consensus 6 ~~il~~~~~~~G-----H~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (387)
..|+|.|..+.| -..-+..|++.|.+ +|.+|.++.++..++..++... .++. ... ...
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~-~~~~Vvl~g~~~e~e~~~~i~~--------~~~~-----~~~--l~~- 238 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIA-KGYQVVLFGGPDEEERAEEIAK--------GLPN-----AVI--LAG- 238 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHH-CCCEEEEecChHHHHHHHHHHH--------hcCC-----ccc--cCC-
Confidence 467777762332 23468899999999 9999999988755555444321 0010 000 000
Q ss_pred CCCCCCchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhhHHHHHHhCCceEEEcc
Q 040467 81 DSLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWSAEIAQEYGIFNALFVG 146 (387)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~~~~a~~lgiP~v~~~~ 146 (387)
......+.++++ ..|++|.- ..+...+|..+|.|.|.++.
T Consensus 239 ---------------k~sL~e~~~li~---------~a~l~I~~--DSg~~HlAaA~~~P~I~iyg 278 (334)
T COG0859 239 ---------------KTSLEELAALIA---------GADLVIGN--DSGPMHLAAALGTPTIALYG 278 (334)
T ss_pred ---------------CCCHHHHHHHHh---------cCCEEEcc--CChHHHHHHHcCCCEEEEEC
Confidence 111222334443 46887754 34667889999999999864
No 466
>PRK07308 flavodoxin; Validated
Probab=26.45 E-value=1.4e+02 Score=23.25 Aligned_cols=36 Identities=17% Similarity=0.039 Sum_probs=26.5
Q ss_pred ccEEEEEcCCCcccHHH-HHHHHHHHHhCCCcEEEEEeCC
Q 040467 5 KENIVMFPLMAQGHTIP-FLALALHLENTNRYTITFVNTP 43 (387)
Q Consensus 5 ~~~il~~~~~~~GH~~P-~l~la~~L~~~rGh~Vt~~~~~ 43 (387)
|.+|++.+ .+||..= .-.|++.|.+ .|++|.+.-..
T Consensus 3 ~~~IvY~S--~tGnTe~iA~~ia~~l~~-~g~~~~~~~~~ 39 (146)
T PRK07308 3 LAKIVYAS--MTGNTEEIADIVADKLRE-LGHDVDVDECT 39 (146)
T ss_pred eEEEEEEC--CCchHHHHHHHHHHHHHh-CCCceEEEecc
Confidence 56676655 6788877 4567888988 99999876543
No 467
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=26.39 E-value=60 Score=25.69 Aligned_cols=30 Identities=13% Similarity=0.172 Sum_probs=25.4
Q ss_pred cCCCcccHHHHHHHHHHHHhCCCcEEEEEeC
Q 040467 12 PLMAQGHTIPFLALALHLENTNRYTITFVNT 42 (387)
Q Consensus 12 ~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~ 42 (387)
|..+..|+.-++.=|.+|++ .|.+..++..
T Consensus 57 PtCs~~HvPGyi~~a~elks-KGVd~iicvS 86 (171)
T KOG0541|consen 57 PTCSSSHVPGYIEKADELKS-KGVDEIICVS 86 (171)
T ss_pred CccccccCchHHHHHHHHHh-cCCcEEEEEe
Confidence 34478999999999999999 9988877753
No 468
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=26.37 E-value=1.2e+02 Score=22.73 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=28.6
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeC
Q 040467 5 KENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNT 42 (387)
Q Consensus 5 ~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~ 42 (387)
...|+++++++. +...+..+++|.+ .|.+++++..
T Consensus 9 g~di~iia~G~~--~~~al~A~~~L~~-~Gi~~~vi~~ 43 (124)
T PF02780_consen 9 GADITIIAYGSM--VEEALEAAEELEE-EGIKAGVIDL 43 (124)
T ss_dssp SSSEEEEEETTH--HHHHHHHHHHHHH-TTCEEEEEEE
T ss_pred CCCEEEEeehHH--HHHHHHHHHHHHH-cCCceeEEee
Confidence 346889998887 4567999999999 9999998853
No 469
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=26.34 E-value=72 Score=29.87 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=27.3
Q ss_pred CCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEe
Q 040467 2 AQRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVN 41 (387)
Q Consensus 2 ~~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~ 41 (387)
||...+|+|+-.+-.| +.+|..|++ +|++|+++=
T Consensus 1 ~m~~~dV~IvGaG~~G-----l~~A~~L~~-~G~~v~viE 34 (405)
T PRK08850 1 MMQSVDVAIIGGGMVG-----LALAAALKE-SDLRIAVIE 34 (405)
T ss_pred CCCcCCEEEECccHHH-----HHHHHHHHh-CCCEEEEEc
Confidence 3445689999888766 677888999 999999994
No 470
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=26.31 E-value=1.2e+02 Score=27.64 Aligned_cols=34 Identities=26% Similarity=0.272 Sum_probs=30.2
Q ss_pred EEEE--EcCCCcccHHHHHHHHHHHHhCCCcEEEEEe
Q 040467 7 NIVM--FPLMAQGHTIPFLALALHLENTNRYTITFVN 41 (387)
Q Consensus 7 ~il~--~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~ 41 (387)
=|.+ ++.++.|-+--.+.|++.|.+ +|++|.+++
T Consensus 51 vIsVGNi~vGGtGKTP~v~~L~~~l~~-~g~~~~ils 86 (325)
T PRK00652 51 VIVVGNITVGGTGKTPVVIALAEQLQA-RGLKPGVVS 86 (325)
T ss_pred EEEEcCeeCCCCChHHHHHHHHHHHHH-CCCeEEEEC
Confidence 3455 678999999999999999999 999999996
No 471
>PRK13463 phosphatase PhoE; Provisional
Probab=26.14 E-value=47 Score=27.65 Aligned_cols=21 Identities=19% Similarity=0.184 Sum_probs=18.6
Q ss_pred eeeeccChhHHHHHHHcCCcc
Q 040467 365 AFLSHCGWNSVLEALSHRVPI 385 (387)
Q Consensus 365 ~~v~HGG~~s~~eal~~GvP~ 385 (387)
++|+|||...+.-+...|.|.
T Consensus 147 lvVsHg~~ir~~~~~~~~~~~ 167 (203)
T PRK13463 147 LIVSHAAAAKLLVGHFAGIEI 167 (203)
T ss_pred EEEeChHHHHHHHHHHhCCCH
Confidence 699999999999998888874
No 472
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=26.07 E-value=80 Score=28.34 Aligned_cols=33 Identities=9% Similarity=0.059 Sum_probs=27.2
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCC
Q 040467 5 KENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTP 43 (387)
Q Consensus 5 ~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~ 43 (387)
++||+++-.|+.|=+ +|..|.+ .||+|+++.-.
T Consensus 2 ~m~I~IiGaGaiG~~-----~a~~L~~-~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSL-----WACRLAR-AGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHH-----HHHHHHh-CCCCeEEEEec
Confidence 357999999998854 5777899 99999999864
No 473
>PRK03094 hypothetical protein; Provisional
Probab=26.06 E-value=64 Score=22.34 Aligned_cols=22 Identities=9% Similarity=0.256 Sum_probs=17.8
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCc
Q 040467 22 FLALALHLENTNRYTITFVNTPS 44 (387)
Q Consensus 22 ~l~la~~L~~~rGh~Vt~~~~~~ 44 (387)
+-.|...|++ +||+|.=+..+.
T Consensus 10 Ls~i~~~L~~-~GYeVv~l~~~~ 31 (80)
T PRK03094 10 LTDVQQALKQ-KGYEVVQLRSEQ 31 (80)
T ss_pred cHHHHHHHHH-CCCEEEecCccc
Confidence 4578999999 999998775543
No 474
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=26.00 E-value=3.9e+02 Score=22.26 Aligned_cols=103 Identities=14% Similarity=0.132 Sum_probs=55.6
Q ss_pred hhhhccccCCC--CCCeeEEEecCCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhcc
Q 040467 264 TELCKNWLDTK--PCNSVIYVSFGSQNTIAASQMMQLAMALEACGKNFIWVVKPPLGFDMNSEFRANEWLPEGFEERIKD 341 (387)
Q Consensus 264 ~~~~~~~l~~~--~~~~~v~vs~GS~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (387)
.+-+..++... ....++||.-.+.. +.+......+++++.+..+.-..-... .-.+.+.+.+.
T Consensus 15 ~~~~~~~~~~~~~~~~~i~~iptA~~~--~~~~~~~~~~~~~~lG~~~~~~~~~~~------------~~~~~~~~~l~- 79 (210)
T cd03129 15 RPILQDFLARAGGAGARVLFIPTASGD--RDEYGEEYRAAFERLGVEVVHLLLIDT------------ANDPDVVARLL- 79 (210)
T ss_pred HHHHHHHHHHcCCCCCeEEEEeCCCCC--hHHHHHHHHHHHHHcCCceEEEeccCC------------CCCHHHHHHHh-
Confidence 34445555443 23558888877764 556677788999998877653332110 01122333333
Q ss_pred CCCcEEeccccCHHHhhCccCcceeeeccChhHHHHHHHcCCcccC
Q 040467 342 SGQGLVVQKWAPQVEILSHKSISAFLSHCGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 342 ~~~~v~~~~~~pq~~lL~~~~~~~~v~HGG~~s~~eal~~GvP~l~ 387 (387)
..++++..-=.|..++.. +-.+++...+.+.+..|+|+++
T Consensus 80 -~ad~I~~~GG~~~~~~~~-----l~~t~~~~~i~~~~~~G~v~~G 119 (210)
T cd03129 80 -EADGIFVGGGNQLRLLSV-----LRETPLLDAILKRVARGVVIGG 119 (210)
T ss_pred -hCCEEEEcCCcHHHHHHH-----HHhCChHHHHHHHHHcCCeEEE
Confidence 333333344455555543 3334555666777777777653
No 475
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=25.85 E-value=1.8e+02 Score=26.82 Aligned_cols=89 Identities=19% Similarity=0.215 Sum_probs=53.3
Q ss_pred cCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCc-----hhHHHHhccCCCcEEeccccCHH---HhhC
Q 040467 288 NTIAASQMMQLAMALEACGKNFIWVVKPPLGFDMNSEFRANEWLP-----EGFEERIKDSGQGLVVQKWAPQV---EILS 359 (387)
Q Consensus 288 ~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~pq~---~lL~ 359 (387)
+.....-+..+++++++.+.++...+..+. ...... ..++ .+-. ...|.=.+.+.++++|. .+|-
T Consensus 188 F~Ye~~al~~ll~~~~~~~~pv~lLvp~Gr---~~~~v~--~~l~~~~~~~g~~--~~~g~L~~~~LPf~~Q~~yD~LLW 260 (371)
T TIGR03837 188 FCYENAALPALLDALAQSGSPVHLLVPEGR---ALAAVA--AWLGDALLAAGDV--HRRGALTVAVLPFVPQDDYDRLLW 260 (371)
T ss_pred EecCChhHHHHHHHHHhCCCCeEEEecCCc---cHHHHH--HHhCccccCCccc--cccCceEEEEcCCCChhhHHHHHH
Confidence 445566788899999888777766665442 000000 0011 0100 11112246677888864 5888
Q ss_pred ccCcceeeeccChhHHHHHHHcCCccc
Q 040467 360 HKSISAFLSHCGWNSVLEALSHRVPII 386 (387)
Q Consensus 360 ~~~~~~~v~HGG~~s~~eal~~GvP~l 386 (387)
.|++ .|| =|=-|+.-|..+|+|+|
T Consensus 261 ~cD~-NfV--RGEDSFVRAqWAgkPfv 284 (371)
T TIGR03837 261 ACDL-NFV--RGEDSFVRAQWAGKPFV 284 (371)
T ss_pred hChh-cEe--echhHHHHHHHcCCCce
Confidence 8775 444 36779999999999986
No 476
>PRK07236 hypothetical protein; Provisional
Probab=25.81 E-value=76 Score=29.46 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=27.9
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEe
Q 040467 3 QRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVN 41 (387)
Q Consensus 3 ~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~ 41 (387)
|+..+|+|+-.+-.| +.+|..|++ +|++|+++=
T Consensus 4 ~~~~~ViIVGaG~aG-----l~~A~~L~~-~G~~v~v~E 36 (386)
T PRK07236 4 MSGPRAVVIGGSLGG-----LFAALLLRR-AGWDVDVFE 36 (386)
T ss_pred CCCCeEEEECCCHHH-----HHHHHHHHh-CCCCEEEEe
Confidence 556789999888555 889999999 999999995
No 477
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=25.76 E-value=3.2e+02 Score=21.26 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=18.7
Q ss_pred cceeeeccC------hhHHHHHHHcCCcccC
Q 040467 363 ISAFLSHCG------WNSVLEALSHRVPIIG 387 (387)
Q Consensus 363 ~~~~v~HGG------~~s~~eal~~GvP~l~ 387 (387)
..++++|+| .+.+.+|...++|+|.
T Consensus 60 ~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~ 90 (155)
T cd07035 60 PGVVLVTSGPGLTNAVTGLANAYLDSIPLLV 90 (155)
T ss_pred CEEEEEcCCCcHHHHHHHHHHHHhhCCCEEE
Confidence 345888866 4578888999999873
No 478
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=25.74 E-value=4.8e+02 Score=23.22 Aligned_cols=100 Identities=10% Similarity=0.129 Sum_probs=54.5
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhC-CCcEEEEEeC-C-cchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCC
Q 040467 4 RKENIVMFPLMAQGHTIPFLALALHLENT-NRYTITFVNT-P-SNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENS 80 (387)
Q Consensus 4 ~~~~il~~~~~~~GH~~P~l~la~~L~~~-rGh~Vt~~~~-~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (387)
+++||+++.++.-+.+.-++ ++..+. -+++|.++.+ . ......++ .++.+..++.. . . +.
T Consensus 88 ~~~ri~vl~Sg~gsnl~al~---~~~~~~~~~~~i~~visn~~~~~~lA~~-----~gIp~~~~~~~----~--~---~~ 150 (286)
T PRK06027 88 ERKRVVILVSKEDHCLGDLL---WRWRSGELPVEIAAVISNHDDLRSLVER-----FGIPFHHVPVT----K--E---TK 150 (286)
T ss_pred cCcEEEEEEcCCCCCHHHHH---HHHHcCCCCcEEEEEEEcChhHHHHHHH-----hCCCEEEeccC----c--c---cc
Confidence 46789999999855555444 343331 3678877653 2 23334444 67777766521 0 0 00
Q ss_pred CCCCCCchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCch-hhHHHHHHhCCceE
Q 040467 81 DSLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFA-WSAEIAQEYGIFNA 142 (387)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~-~~~~~a~~lgiP~v 142 (387)
......+.+.+++. ++|+||.-.+.. ....+-+.+.-..+
T Consensus 151 ---------------~~~~~~~~~~l~~~-------~~Dlivlagy~~il~~~~l~~~~~~ii 191 (286)
T PRK06027 151 ---------------AEAEARLLELIDEY-------QPDLVVLARYMQILSPDFVARFPGRII 191 (286)
T ss_pred ---------------chhHHHHHHHHHHh-------CCCEEEEecchhhcCHHHHhhccCCce
Confidence 11223355667777 899988765433 44444444433333
No 479
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.56 E-value=1.6e+02 Score=25.45 Aligned_cols=31 Identities=3% Similarity=0.030 Sum_probs=22.8
Q ss_pred EEEEEcCC--CcccHHHHHHHHHHHHhCCCcEEEEEe
Q 040467 7 NIVMFPLM--AQGHTIPFLALALHLENTNRYTITFVN 41 (387)
Q Consensus 7 ~il~~~~~--~~GH~~P~l~la~~L~~~rGh~Vt~~~ 41 (387)
++++++.. +.| --.++|++|++ +|++|.+..
T Consensus 8 k~~lItGa~~s~G---IG~a~a~~la~-~G~~v~l~~ 40 (256)
T PRK07889 8 KRILVTGVITDSS---IAFHVARVAQE-QGAEVVLTG 40 (256)
T ss_pred CEEEEeCCCCcch---HHHHHHHHHHH-CCCEEEEec
Confidence 56666665 443 34678999999 999998865
No 480
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=25.55 E-value=1.1e+02 Score=29.97 Aligned_cols=26 Identities=8% Similarity=-0.035 Sum_probs=21.5
Q ss_pred CCeEEEeCCCchhhHHHHHHhCCceEEEc
Q 040467 117 KPVCIIADMFFAWSAEIAQEYGIFNALFV 145 (387)
Q Consensus 117 ~pD~vV~D~~~~~~~~~a~~lgiP~v~~~ 145 (387)
+||++|.+.. +..+|+++|+|.+.+.
T Consensus 437 ~~DlliG~s~---~k~~a~~~giPlir~g 462 (515)
T TIGR01286 437 PVDFLIGNSY---GKYIQRDTLVPLIRIG 462 (515)
T ss_pred CCCEEEECch---HHHHHHHcCCCEEEec
Confidence 7899998764 5788999999998873
No 481
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=25.55 E-value=1.6e+02 Score=25.02 Aligned_cols=38 Identities=11% Similarity=0.162 Sum_probs=32.0
Q ss_pred ccEEEEEcCC-CcccHHHHHHHHHHHHhCCCcEEEEEeCC
Q 040467 5 KENIVMFPLM-AQGHTIPFLALALHLENTNRYTITFVNTP 43 (387)
Q Consensus 5 ~~~il~~~~~-~~GH~~P~l~la~~L~~~rGh~Vt~~~~~ 43 (387)
+..|+|++=+ -.+...+.....++|++ +|++|.++++.
T Consensus 150 ~t~vvIiSDg~~~~~~~~~~~~l~~l~~-r~~rviwLnP~ 188 (222)
T PF05762_consen 150 RTTVVIISDGWDTNDPEPLAEELRRLRR-RGRRVIWLNPL 188 (222)
T ss_pred CcEEEEEecccccCChHHHHHHHHHHHH-hCCEEEEECCc
Confidence 3457777777 57899999999999999 99999999886
No 482
>PRK10239 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase; Provisional
Probab=25.45 E-value=2.6e+02 Score=22.37 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=20.8
Q ss_pred eEEEecCCCcCCCHHHHHHHHHHHHhC
Q 040467 279 VIYVSFGSQNTIAASQMMQLAMALEAC 305 (387)
Q Consensus 279 ~v~vs~GS~~~~~~~~~~~~~~a~~~~ 305 (387)
.+|+++||......+.++..++.+++.
T Consensus 3 ~v~i~lGSN~g~~~~~l~~A~~~L~~~ 29 (159)
T PRK10239 3 VAYIAIGSNLASPLEQVNAALKALGDI 29 (159)
T ss_pred EEEEEEeCchhhHHHHHHHHHHHHhcC
Confidence 689999999766666677777777664
No 483
>TIGR01498 folK 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase. This model describes the folate biosynthesis enzyme 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase. Alternate names include 6-hydroxymethyl-7,8-dihydropterin diphosphokinase and 7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase (HPPK). The extreme C-terminal region, of typically eight to thirty residues, is not included in the model. This enzyme may be found as a fusion protein with other enzymes of folate biosynthesis.
Probab=25.37 E-value=69 Score=24.49 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=21.0
Q ss_pred EEEecCCCcCCCHHHHHHHHHHHHhCCCc
Q 040467 280 IYVSFGSQNTIAASQMMQLAMALEACGKN 308 (387)
Q Consensus 280 v~vs~GS~~~~~~~~~~~~~~a~~~~~~~ 308 (387)
+|+++||......+.++..++.+.+....
T Consensus 1 ~~i~lGSN~g~~~~~l~~A~~~L~~~~~~ 29 (127)
T TIGR01498 1 AYIALGSNLGDRLKNLRAALAALAALPVR 29 (127)
T ss_pred CEEEEeCCcHhHHHHHHHHHHHHhcCCcc
Confidence 58999999866666777777777665433
No 484
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=25.31 E-value=1.4e+02 Score=26.21 Aligned_cols=34 Identities=12% Similarity=0.179 Sum_probs=30.4
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEe
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVN 41 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~ 41 (387)
+|+|+-=|+.|-..-.+.||..|++ +|++|.++=
T Consensus 3 ~i~~~gKGGVGKTT~a~nLA~~La~-~G~rVLliD 36 (279)
T PRK13230 3 KFCFYGKGGIGKSTTVCNIAAALAE-SGKKVLVVG 36 (279)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHh-CCCEEEEEe
Confidence 5777866899999999999999999 999998883
No 485
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=25.22 E-value=94 Score=27.54 Aligned_cols=32 Identities=13% Similarity=0.217 Sum_probs=26.8
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCC
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTP 43 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~ 43 (387)
.+|.++-.+..| ..+|..|++ +||+|+++...
T Consensus 4 ~kIaViGaG~mG-----~~iA~~la~-~G~~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLG-----SQIAFQTAF-HGFDVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHH-----HHHHHHHHh-cCCeEEEEeCC
Confidence 479999888888 568889999 99999999643
No 486
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=25.14 E-value=1.4e+02 Score=27.12 Aligned_cols=42 Identities=14% Similarity=0.113 Sum_probs=37.3
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhh
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKL 49 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~ 49 (387)
-|+|+-.-+.|-..-.-.||..|.+ .|+.|.++...-|++..
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~-~g~~VllaA~DTFRAaA 182 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQ-QGKSVLLAAGDTFRAAA 182 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHH-CCCeEEEEecchHHHHH
Confidence 4777788899999999999999999 99999999988887643
No 487
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=24.99 E-value=49 Score=28.21 Aligned_cols=21 Identities=14% Similarity=-0.077 Sum_probs=18.1
Q ss_pred eeeeccChhHHHHHHHcCCcc
Q 040467 365 AFLSHCGWNSVLEALSHRVPI 385 (387)
Q Consensus 365 ~~v~HGG~~s~~eal~~GvP~ 385 (387)
++|+|||...+.-+...|+|.
T Consensus 178 lvVsHg~vir~l~~~~~~~~~ 198 (228)
T PRK14119 178 LVSAHGNSIRALIKYLEDVSD 198 (228)
T ss_pred EEEeChHHHHHHHHHHhCCCH
Confidence 599999999998888888774
No 488
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=24.96 E-value=1.3e+02 Score=28.17 Aligned_cols=36 Identities=8% Similarity=-0.047 Sum_probs=29.8
Q ss_pred ccEEEEEcC--CCcccHHHHHHHHHHHHhCCCcEEEEEe
Q 040467 5 KENIVMFPL--MAQGHTIPFLALALHLENTNRYTITFVN 41 (387)
Q Consensus 5 ~~~il~~~~--~~~GH~~P~l~la~~L~~~rGh~Vt~~~ 41 (387)
+++|+.+.. |+.|-..-.+.||..|+. +|++|.++=
T Consensus 105 ~~~vIav~n~KGGVGKTTta~nLA~~LA~-~G~rVLlID 142 (387)
T PHA02519 105 NPVVLAVMSHKGGVYKTSSAVHTAQWLAL-QGHRVLLIE 142 (387)
T ss_pred CceEEEEecCCCCCcHHHHHHHHHHHHHh-CCCcEEEEe
Confidence 345554444 688999999999999999 999999884
No 489
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=24.87 E-value=1e+02 Score=27.35 Aligned_cols=30 Identities=23% Similarity=0.237 Sum_probs=25.6
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeC
Q 040467 7 NIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNT 42 (387)
Q Consensus 7 ~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~ 42 (387)
+|.|+-.+..| .++|+.|.+ +||+|+++.-
T Consensus 2 kIafIGLG~MG-----~pmA~~L~~-aG~~v~v~~r 31 (286)
T COG2084 2 KIAFIGLGIMG-----SPMAANLLK-AGHEVTVYNR 31 (286)
T ss_pred eEEEEcCchhh-----HHHHHHHHH-CCCEEEEEeC
Confidence 58888888777 478999999 9999999974
No 490
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=24.67 E-value=1.6e+02 Score=25.90 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=23.6
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEe
Q 040467 6 ENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVN 41 (387)
Q Consensus 6 ~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~ 41 (387)
.+-++++..+.| --.++|+.|++ |||+|.++.
T Consensus 6 ~~~~lITGASsG---IG~~~A~~lA~-~g~~liLva 37 (265)
T COG0300 6 GKTALITGASSG---IGAELAKQLAR-RGYNLILVA 37 (265)
T ss_pred CcEEEEECCCch---HHHHHHHHHHH-CCCEEEEEe
Confidence 345555555544 24689999999 999999997
No 491
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=24.65 E-value=1.1e+02 Score=25.64 Aligned_cols=30 Identities=20% Similarity=0.134 Sum_probs=22.2
Q ss_pred CCeEEE-eCCCch-hhHHHHHHhCCceEEEcc
Q 040467 117 KPVCII-ADMFFA-WSAEIAQEYGIFNALFVG 146 (387)
Q Consensus 117 ~pD~vV-~D~~~~-~~~~~a~~lgiP~v~~~~ 146 (387)
.||+|| .|+..- -+..=|.++|||.|.+.-
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivD 145 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEAIEVGIPVVALCD 145 (204)
T ss_pred CCCEEEEECCcccHHHHHHHHHhCCCEEEEEe
Confidence 587655 677655 556678899999999864
No 492
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=24.62 E-value=1.3e+02 Score=26.16 Aligned_cols=37 Identities=14% Similarity=0.164 Sum_probs=26.9
Q ss_pred EEEEEcC--CCcccHHHHHHHHHHHHhCCCcEEEEEeCCc
Q 040467 7 NIVMFPL--MAQGHTIPFLALALHLENTNRYTITFVNTPS 44 (387)
Q Consensus 7 ~il~~~~--~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~ 44 (387)
||.++.. |+.|--.-..+||-+|++ .|++|-++=..-
T Consensus 1 HiIvV~sgKGGvGKSTva~~lA~aLa~-~G~kVg~lD~Di 39 (261)
T PF09140_consen 1 HIIVVGSGKGGVGKSTVAVNLAVALAR-MGKKVGLLDLDI 39 (261)
T ss_dssp EEEEEE-SSTTTTHHHHHHHHHHHHHC-TT--EEEEE--T
T ss_pred CEEEEecCCCCCcHHHHHHHHHHHHHH-CCCeEEEEecCC
Confidence 4555555 588999999999999999 999999996433
No 493
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=24.61 E-value=2.1e+02 Score=21.93 Aligned_cols=56 Identities=11% Similarity=0.183 Sum_probs=41.6
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeC----CcchhhhhhcCCCCCCeeEEecc
Q 040467 4 RKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNT----PSNLKKLKSSLPQNSSIHLREIP 65 (387)
Q Consensus 4 ~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~----~~~~~~~~~~~~~~~~i~~~~~~ 65 (387)
++.||++-..+.-+|-.---=++..|+. .|++|..... +.+.+.+.+ .+..++.+.
T Consensus 1 ~~~~v~~a~~g~D~Hd~g~~iv~~~l~~-~GfeVi~lg~~~s~e~~v~aa~e-----~~adii~iS 60 (132)
T TIGR00640 1 RRPRILVAKMGQDGHDRGAKVIATAYAD-LGFDVDVGPLFQTPEEIARQAVE-----ADVHVVGVS 60 (132)
T ss_pred CCCEEEEEeeCCCccHHHHHHHHHHHHh-CCcEEEECCCCCCHHHHHHHHHH-----cCCCEEEEc
Confidence 3678999999999999999888899999 9999998764 333334444 444555553
No 494
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=24.59 E-value=1.3e+02 Score=25.37 Aligned_cols=32 Identities=31% Similarity=0.358 Sum_probs=23.2
Q ss_pred CCeEEEeCCCc--hhhHHHHHHhCCceEEEcchh
Q 040467 117 KPVCIIADMFF--AWSAEIAQEYGIFNALFVGGG 148 (387)
Q Consensus 117 ~pD~vV~D~~~--~~~~~~a~~lgiP~v~~~~~~ 148 (387)
+||+||..... .....-....++|++.+....
T Consensus 60 ~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 60 KPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp --SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred CCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 89999988777 455566667899999987654
No 495
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=24.59 E-value=2.4e+02 Score=22.03 Aligned_cols=97 Identities=13% Similarity=0.088 Sum_probs=60.9
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCC--CcEEEEEeCCcchhhhhhcCCCCC-CeeEEeccCCCCCCCCCCCCCCC
Q 040467 4 RKENIVMFPLMAQGHTIPFLALALHLENTN--RYTITFVNTPSNLKKLKSSLPQNS-SIHLREIPFDGIAHDLPPCTENS 80 (387)
Q Consensus 4 ~~~~il~~~~~~~GH~~P~l~la~~L~~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~ 80 (387)
.+++|++... -.+=.-++.+|+.|.+ . |+++ ++++...+.+++ . |+.+..+ .. + +.+
T Consensus 3 ~~~~v~lsv~--d~dK~~l~~~a~~l~~-ll~Gf~l--~AT~gTa~~L~~-----~~Gi~v~~v-i~----~-~~g---- 62 (142)
T PRK05234 3 ARKRIALIAH--DHKKDDLVAWVKAHKD-LLEQHEL--YATGTTGGLIQE-----ATGLDVTRL-LS----G-PLG---- 62 (142)
T ss_pred cCcEEEEEEe--ccchHHHHHHHHHHHH-HhcCCEE--EEeChHHHHHHh-----ccCCeeEEE-Ec----C-CCC----
Confidence 3456666663 4556778999999999 8 9995 567788888888 4 5555544 11 0 000
Q ss_pred CCCCCCchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEe--CCCch--------hhHHHHHHhCCceEEE
Q 040467 81 DSLPFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIA--DMFFA--------WSAEIAQEYGIFNALF 144 (387)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~--D~~~~--------~~~~~a~~lgiP~v~~ 144 (387)
-.+.+.+++++- +.|+||. |.... .-...|-..|||++..
T Consensus 63 -----------------g~~~i~~~I~~g-------~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~ 112 (142)
T PRK05234 63 -----------------GDQQIGALIAEG-------KIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATN 112 (142)
T ss_pred -----------------CchhHHHHHHcC-------ceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcC
Confidence 012344555544 7899987 32332 2235577889998874
No 496
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=24.58 E-value=4.4e+02 Score=22.43 Aligned_cols=117 Identities=21% Similarity=0.042 Sum_probs=65.0
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEeCCcchhhhhhcCCCCCCeeEEeccCCCCCCCCCCCCCCCCCC
Q 040467 4 RKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVNTPSNLKKLKSSLPQNSSIHLREIPFDGIAHDLPPCTENSDSL 83 (387)
Q Consensus 4 ~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 83 (387)
.|.=|+++..|++|-..-...|++-|.- .|++..++..-+++........ .. +-+.+
T Consensus 11 ~kl~ivmVGLPArGKs~ia~kl~ryL~w-~g~~~~vFn~g~yRR~~~~~~~--------~~------~ff~p-------- 67 (222)
T PF01591_consen 11 GKLVIVMVGLPARGKSYIARKLCRYLNW-LGVKTKVFNVGDYRRKLSGAPQ--------DA------EFFDP-------- 67 (222)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHH-TT--EEEEEHHHHHHHHHSS-S---------G------GGGST--------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhh-cCCCcceeecccceeccccccc--------cc------ccCCC--------
Confidence 3566889999999999999999999999 9999999987777766666110 00 00000
Q ss_pred CCCchhHHHHHHhhhhHHHHHHHHhhhhccCCCCCeEEEeCCCchhh------HHHHHHhCCceEEEcchhH
Q 040467 84 PFHLFPNFFESTLSFKPHFRKLINGLIDEQNGHKPVCIIADMFFAWS------AEIAQEYGIFNALFVGGGS 149 (387)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vV~D~~~~~~------~~~a~~lgiP~v~~~~~~~ 149 (387)
.........-+.....+.++++.+.++ .=++-|.|....-- .......|+..+.+-...-
T Consensus 68 --~n~~~~~~R~~~a~~~l~dl~~~l~~~----~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~ 133 (222)
T PF01591_consen 68 --DNEEAKKLREQIAKEALEDLIEWLQEE----GGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICD 133 (222)
T ss_dssp --T-HHHHHHHHHHHHHHHHHHHHHHHTS------SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE--
T ss_pred --CChHHHHHHHHHHHHHHHHHHHHHhcC----CCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeC
Confidence 011111111122344555566555422 45899999987632 2455667888777654433
No 497
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=24.51 E-value=2.1e+02 Score=26.27 Aligned_cols=38 Identities=11% Similarity=0.124 Sum_probs=30.2
Q ss_pred cccCHHHhhCccCcceeee------ccChhHHHHHHHcCCcccC
Q 040467 350 KWAPQVEILSHKSISAFLS------HCGWNSVLEALSHRVPIIG 387 (387)
Q Consensus 350 ~~~pq~~lL~~~~~~~~v~------HGG~~s~~eal~~GvP~l~ 387 (387)
.|-..+++|...++.++++ +-+.--+.+||.+|+.++|
T Consensus 52 ~y~~~eell~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~ 95 (343)
T TIGR01761 52 LYCEVEELPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQ 95 (343)
T ss_pred ccCCHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEE
Confidence 5677889998888877774 3446778899999999886
No 498
>TIGR03445 mycothiol_MshB 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase. Members of this protein family are 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase, the MshB protein of mycothiol biosynthesis in Mycobacterium tuberculosis and related species.
Probab=24.47 E-value=3e+02 Score=24.44 Aligned_cols=20 Identities=10% Similarity=0.283 Sum_probs=15.4
Q ss_pred hhhHHHHHHHHhhhhccCCCCCeEEEe
Q 040467 97 SFKPHFRKLINGLIDEQNGHKPVCIIA 123 (387)
Q Consensus 97 ~~~~~~~~ll~~~~~~~~~~~pD~vV~ 123 (387)
.....+.+++++. +||+||+
T Consensus 110 e~~~~l~~~Ir~~-------~PdvViT 129 (284)
T TIGR03445 110 EAAGALVAVIREV-------RPHVVVT 129 (284)
T ss_pred HHHHHHHHHHHHh-------CCcEEEe
Confidence 3556677788888 9999886
No 499
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=24.42 E-value=95 Score=29.68 Aligned_cols=35 Identities=11% Similarity=0.126 Sum_probs=30.1
Q ss_pred CCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCcEEEEEe
Q 040467 1 MAQRKENIVMFPLMAQGHTIPFLALALHLENTNRYTITFVN 41 (387)
Q Consensus 1 ~~~~~~~il~~~~~~~GH~~P~l~la~~L~~~rGh~Vt~~~ 41 (387)
|+|++..|+++-.+..| +..|..|++ +|++|+++=
T Consensus 1 ~~~~~yDvvVIGaGpaG-----~~aA~~la~-~G~~v~liE 35 (461)
T PRK05249 1 MHMYDYDLVVIGSGPAG-----EGAAMQAAK-LGKRVAVIE 35 (461)
T ss_pred CCCccccEEEECCCHHH-----HHHHHHHHh-CCCEEEEEe
Confidence 66777889999988766 788999999 999999994
No 500
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=24.36 E-value=1.2e+02 Score=23.74 Aligned_cols=25 Identities=20% Similarity=0.045 Sum_probs=20.0
Q ss_pred eEEEeCCCchhhHHHHHHhCCceEEE
Q 040467 119 VCIIADMFFAWSAEIAQEYGIFNALF 144 (387)
Q Consensus 119 D~vV~D~~~~~~~~~a~~lgiP~v~~ 144 (387)
+++++|--. .....|+.+|++.|.+
T Consensus 152 ~~~~vgD~~-~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 152 EILFVGDSP-SDVEAAKEAGIKTIWV 176 (176)
T ss_dssp GEEEEESSH-HHHHHHHHTTSEEEEE
T ss_pred eEEEEeCCH-HHHHHHHHcCCeEEeC
Confidence 677777655 8889999999998864
Done!