BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040468
(543 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 171 bits (433), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 146/457 (31%), Positives = 212/457 (46%), Gaps = 59/457 (12%)
Query: 96 LATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIP-SSFADMQMLARLDISYNQ 154
L LD+S N F G +P G+ S N F+G +P + M+ L LD+S+N+
Sbjct: 293 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNE 351
Query: 155 LTGEIPERMATGCFSLEILALSNNSLQGHIFSK--KFSLTNLMTLQLDGNNFSGEIPESL 212
+GE+PE + SL L LS+N+ G I + L L L N F+G+IP +L
Sbjct: 352 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 411
Query: 213 SKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLS 272
S C L L+LS N+LSG IP LG+LS L D+ + N LEG IP E ++ L L L
Sbjct: 412 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 471
Query: 273 NNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRID 332
N + G +PS S + NL + LS N L G IP I
Sbjct: 472 FNDLTGEIPSGLS-----------------------NCTNLNWISLSNNRLTGEIPKWIG 508
Query: 333 RLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPV 392
RL L+ L L+NN G IP +L + + +DL+ N +G IP + S
Sbjct: 509 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS--------- 559
Query: 393 APTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTT 452
G+ + + + C G L++ G R+ E+ + +T
Sbjct: 560 -------GKIAANFIAGKRYVYIKNDGMKKEC-HGAGNLLEFQGIRS-----EQLNRLST 606
Query: 453 KN----MSYYYQGRIL------TSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLT 502
+N S Y G SM +D+S N L+G IP +IG + + LNL HN+++
Sbjct: 607 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 666
Query: 503 GTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTL 539
G+IP +L+ + LDLS N L G+IP ++ LT L
Sbjct: 667 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 703
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 127/425 (29%), Positives = 180/425 (42%), Gaps = 56/425 (13%)
Query: 10 TESHYNSLTPKF------QLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPX 63
E+ + P F LT + LSG G P F L++ LS N SGE P
Sbjct: 274 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 333
Query: 64 XXXXXXXXXXXXXXXXXXXFGSFRMPIHS-HQKLATLDVSNNFFQGHI-PVEIGTYLPGL 121
G + + L TLD+S+N F G I P L
Sbjct: 334 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 393
Query: 122 MEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQ 181
E L N F G IP + ++ L L +S+N L+G IP + + L L L N L+
Sbjct: 394 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLE 452
Query: 182 GHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSF 241
G I + + L TL LD N+ +GEIP LS C L + LS+N L+GEIP+W+G L
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 512
Query: 242 LVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCF-------------SPAY 288
L + + NN+ G IP E R L LDL+ N GT+P+ Y
Sbjct: 513 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 572
Query: 289 I--------EQVHLSKNKIE--------------------------GRLESVIPDSPNLV 314
+ ++ H + N +E G ++ +++
Sbjct: 573 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 632
Query: 315 TLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGH 374
LD+SYN L G IP I +P L L L +N I G IP ++ L+ + ++DLS N L G
Sbjct: 633 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 692
Query: 375 IPPCL 379
IP +
Sbjct: 693 IPQAM 697
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 150/305 (49%), Gaps = 25/305 (8%)
Query: 95 KLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQ 154
+L +L +S N+ G IP +G+ L L + L N G IP ++ L L + +N
Sbjct: 416 ELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 474
Query: 155 LTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSK 214
LTGEIP ++ C +L ++LSNN L G I L NL L+L N+FSG IP L
Sbjct: 475 LTGEIPSGLSN-CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 533
Query: 215 CRRLGGLYLSDNHLSGEIPRWLGNLSFLVD---------IIMPNNNLEGLIP-----IEF 260
CR L L L+ N +G IP + S + + + N+ ++ +EF
Sbjct: 534 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 593
Query: 261 CQLRFLRILDLSNNT-------IFG--TLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSP 311
+R ++ LS ++G T P+ + + + +S N + G + I P
Sbjct: 594 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 653
Query: 312 NLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNL 371
L L+L +N + GSIP+ + L L+ L L++N ++G IP + L + IDLS+NNL
Sbjct: 654 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 713
Query: 372 SGHIP 376
SG IP
Sbjct: 714 SGPIP 718
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 121/447 (27%), Positives = 202/447 (45%), Gaps = 52/447 (11%)
Query: 121 LMEFNLSRNAFNGSIPS--SFADMQMLARLDISYNQLTGEIPERMATGCF--SLEILALS 176
L +LSRN+ +G + + S L L++S N L + P +++ G SLE+L LS
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLDLS 156
Query: 177 NNSLQG-HIFSKKFS--LTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIP 233
NS+ G ++ S L L + GN SG++ +S+C L L +S N+ S IP
Sbjct: 157 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP 214
Query: 234 RWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVH 293
+LG+ S L + + N L G L++L++S+N G +P ++ +
Sbjct: 215 -FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-LPLKSLQYLS 272
Query: 294 LSKNKIEGRLESVIPDSPNLVT-LDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIP 352
L++NK G + + + + +T LDLS N +G++P L L L++N GE+P
Sbjct: 273 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 332
Query: 353 VQ-LCQLKEVQLIDLSHNNLSGHIPPCLVNTSLS--------EGHDEPVAPTSSSCGRAS 403
+ L +++ ++++DLS N SG +P L N S S P+ P
Sbjct: 333 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP--------- 383
Query: 404 GYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRI 463
N ++ Y + G P + + + ++S+ Y
Sbjct: 384 -----------NLCQNPKNTLQELYLQNNGFTGKIPPTL--SNCSELVSLHLSFNYLSGT 430
Query: 464 LTSMFG-------IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIE 516
+ S G + L N L GEIP ++ Y+ + L L N+LTG IP+ SN +
Sbjct: 431 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 490
Query: 517 SLDLSYNLLHGKIPSQLTVLTTLAVFR 543
+ LS N L G+IP + L LA+ +
Sbjct: 491 WISLSNNRLTGEIPKWIGRLENLAILK 517
Score = 105 bits (263), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 131/484 (27%), Positives = 211/484 (43%), Gaps = 85/484 (17%)
Query: 126 LSRNAFNGSIPSSFADMQMLARLDISYNQLTG------------------------EIPE 161
LS + NGS+ S F L LD+S N L+G + P
Sbjct: 81 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 162 RMATGCF--SLEILALSNNSLQG-HIFSKKFS--LTNLMTLQLDGNNFSGEIPESLSKCR 216
+++ G SLE+L LS NS+ G ++ S L L + GN SG++ +S+C
Sbjct: 140 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCV 197
Query: 217 RLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTI 276
L L +S N+ S IP +LG+ S L + + N L G L++L++S+N
Sbjct: 198 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 256
Query: 277 FGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVT-LDLSYNCLHGSIPNRIDRLP 335
G +P ++ + L++NK G + + + + +T LDLS N +G++P
Sbjct: 257 VGPIPP-LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 315
Query: 336 QLSYLLLANNYIEGEIPVQ-LCQLKEVQLIDLSHNNLSGHIPPCLVNTSLS--------- 385
L L L++N GE+P+ L +++ ++++DLS N SG +P L N S S
Sbjct: 316 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 375
Query: 386 -------------------------EGHDEPVAPTSSSCGRASGYASSYTKTALNATTPF 420
G + PT S+C S+ L+ T P
Sbjct: 376 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF--NYLSGTIP- 432
Query: 421 SSSCG-----RGYPYALDYVGSRTPP----MGKEETIQFTTKNMSYYYQGRI--LTSMFG 469
SS G R L+ + P + ET+ +++ + T++
Sbjct: 433 -SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 491
Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 529
I LS N+LTGEIP IG L + L LS+N+ +G IP + + + LDL+ NL +G I
Sbjct: 492 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 551
Query: 530 PSQL 533
P+ +
Sbjct: 552 PAAM 555
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 141/569 (24%), Positives = 228/569 (40%), Gaps = 131/569 (23%)
Query: 96 LATLDVSNNFFQGHIPVEIGTYL---PGLMEFNLSRNA--FNGSIPSSFADMQMLARLDI 150
L +LD+S N G PV T L GL N+S N F G + S + L LD+
Sbjct: 99 LTSLDLSRNSLSG--PVTTLTSLGSCSGLKFLNVSSNTLDFPGKV-SGGLKLNSLEVLDL 155
Query: 151 SYNQLTGE--IPERMATGCFSLEILALSNNSLQGHI-------------FSKKFS----- 190
S N ++G + ++ GC L+ LA+S N + G + S FS
Sbjct: 156 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF 215
Query: 191 ---LTNLMTLQLDGN--------------------------------------------- 202
+ L L + GN
Sbjct: 216 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAE 275
Query: 203 -NFSGEIPESLS-KCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIE- 259
F+GEIP+ LS C L GL LS NH G +P + G+ S L + + +NN G +P++
Sbjct: 276 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 335
Query: 260 FCQLRFLRILDLSNNTIFGTLPS---------------------------CFSPA-YIEQ 291
++R L++LDLS N G LP C +P +++
Sbjct: 336 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 395
Query: 292 VHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEI 351
++L N G++ + + LV+L LS+N L G+IP+ + L +L L L N +EGEI
Sbjct: 396 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 455
Query: 352 PVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTS----LSEGHDEPVAPTSSSCGRASGYAS 407
P +L +K ++ + L N+L+G IP L N + +S ++ GR A
Sbjct: 456 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 515
Query: 408 -SYTKTALNATTPFSSSCGRGYPYALD-----YVGSRTPPMGKEETIQFTTKNMSYYYQG 461
+ + + P R + LD + G+ M K+ + K + + G
Sbjct: 516 LKLSNNSFSGNIPAELGDCRSLIW-LDLNTNLFNGTIPAAMFKQ-----SGKIAANFIAG 569
Query: 462 R--ILTSMFGIDLSCN------KLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLK 513
+ + G+ C+ + G Q+ L+ + N++ G TF N
Sbjct: 570 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 629
Query: 514 QIESLDLSYNLLHGKIPSQLTVLTTLAVF 542
+ LD+SYN+L G IP ++ + L +
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPYLFIL 658
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 130/305 (42%), Gaps = 30/305 (9%)
Query: 22 QLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPXXXXXXXXXXXXXXXXXXX 81
+L S+ LS GT P L L++ L L GE P
Sbjct: 416 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 475
Query: 82 XFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFAD 141
G + + L + +SNN G IP IG L L LS N+F+G+IP+ D
Sbjct: 476 T-GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGD 533
Query: 142 MQMLARLDISYNQLTGEIPERM--ATGCFSLEILA------LSNNSLQG--HIFSKKFSL 191
+ L LD++ N G IP M +G + +A + N+ ++ H
Sbjct: 534 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 593
Query: 192 TNLMTLQLDGNNFSGEIPESLSKCRRLGG--------------LYLSDNHLSGEIPRWLG 237
+ + QL N S P +++ R GG L +S N LSG IP+ +G
Sbjct: 594 QGIRSEQL--NRLSTRNPCNITS-RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 650
Query: 238 NLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSP-AYIEQVHLSK 296
++ +L + + +N++ G IP E LR L ILDLS+N + G +P S + ++ LS
Sbjct: 651 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 710
Query: 297 NKIEG 301
N + G
Sbjct: 711 NNLSG 715
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 96/387 (24%), Positives = 154/387 (39%), Gaps = 86/387 (22%)
Query: 222 YLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEG----LIPIEFC---------------- 261
+LS++H++G + + + S L + + N+L G L + C
Sbjct: 80 FLSNSHINGSVSGFKCSAS-LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 262 -------QLRFLRILDLSNNTIFGT--LPSCFSPAYIEQVHL--SKNKIEGRLESVIPDS 310
+L L +LDLS N+I G + S E HL S NKI G ++ +
Sbjct: 139 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRC 196
Query: 311 PNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNN 370
NL LD+S N IP + L +L ++ N + G+ + E++L+++S N
Sbjct: 197 VNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 255
Query: 371 LSGHIPPCLVNT----SLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGR 426
G IPP + + SL+E + +G + A + T S
Sbjct: 256 FVGPIPPLPLKSLQYLSLAE-------------NKFTGEIPDFLSGACDTLTGLDLSGNH 302
Query: 427 GYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFG---IDLSCNKLTGEIPT 483
Y + GS + E++ ++ N S L M G +DLS N+ +GE+P
Sbjct: 303 FYGAVPPFFGSCS----LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 358
Query: 484 QIGYLTK---------------------------IHALNLSHNNLTGTIPTTFSNLKQIE 516
+ L+ + L L +N TG IP T SN ++
Sbjct: 359 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV 418
Query: 517 SLDLSYNLLHGKIPSQLTVLTTLAVFR 543
SL LS+N L G IPS L L+ L +
Sbjct: 419 SLHLSFNYLSGTIPSSLGSLSKLRDLK 445
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 90 IHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLD 149
I S L L++ +N G IP E+G L GL +LS N +G IP + + + ML +D
Sbjct: 649 IGSMPYLFILNLGHNDISGSIPDEVGD-LRGLNILDLSSNKLDGRIPQAMSALTMLTEID 707
Query: 150 ISYNQLTGEIPE 161
+S N L+G IPE
Sbjct: 708 LSNNNLSGPIPE 719
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 171 bits (432), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 146/457 (31%), Positives = 212/457 (46%), Gaps = 59/457 (12%)
Query: 96 LATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIP-SSFADMQMLARLDISYNQ 154
L LD+S N F G +P G+ S N F+G +P + M+ L LD+S+N+
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNE 354
Query: 155 LTGEIPERMATGCFSLEILALSNNSLQGHIFSK--KFSLTNLMTLQLDGNNFSGEIPESL 212
+GE+PE + SL L LS+N+ G I + L L L N F+G+IP +L
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414
Query: 213 SKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLS 272
S C L L+LS N+LSG IP LG+LS L D+ + N LEG IP E ++ L L L
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474
Query: 273 NNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRID 332
N + G +PS S + NL + LS N L G IP I
Sbjct: 475 FNDLTGEIPSGLS-----------------------NCTNLNWISLSNNRLTGEIPKWIG 511
Query: 333 RLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPV 392
RL L+ L L+NN G IP +L + + +DL+ N +G IP + S
Sbjct: 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS--------- 562
Query: 393 APTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTT 452
G+ + + + C G L++ G R+ E+ + +T
Sbjct: 563 -------GKIAANFIAGKRYVYIKNDGMKKEC-HGAGNLLEFQGIRS-----EQLNRLST 609
Query: 453 KN----MSYYYQGRIL------TSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLT 502
+N S Y G SM +D+S N L+G IP +IG + + LNL HN+++
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669
Query: 503 GTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTL 539
G+IP +L+ + LDLS N L G+IP ++ LT L
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 127/425 (29%), Positives = 180/425 (42%), Gaps = 56/425 (13%)
Query: 10 TESHYNSLTPKF------QLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPX 63
E+ + P F LT + LSG G P F L++ LS N SGE P
Sbjct: 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336
Query: 64 XXXXXXXXXXXXXXXXXXXFGSFRMPIHS-HQKLATLDVSNNFFQGHI-PVEIGTYLPGL 121
G + + L TLD+S+N F G I P L
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396
Query: 122 MEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQ 181
E L N F G IP + ++ L L +S+N L+G IP + + L L L N L+
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLE 455
Query: 182 GHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSF 241
G I + + L TL LD N+ +GEIP LS C L + LS+N L+GEIP+W+G L
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515
Query: 242 LVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCF-------------SPAY 288
L + + NN+ G IP E R L LDL+ N GT+P+ Y
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575
Query: 289 I--------EQVHLSKNKIE--------------------------GRLESVIPDSPNLV 314
+ ++ H + N +E G ++ +++
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635
Query: 315 TLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGH 374
LD+SYN L G IP I +P L L L +N I G IP ++ L+ + ++DLS N L G
Sbjct: 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695
Query: 375 IPPCL 379
IP +
Sbjct: 696 IPQAM 700
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 98/305 (32%), Positives = 153/305 (50%), Gaps = 25/305 (8%)
Query: 95 KLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQ 154
+L +L +S N+ G IP +G+ L L + L N G IP ++ L L + +N
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477
Query: 155 LTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSK 214
LTGEIP ++ C +L ++LSNN L G I L NL L+L N+FSG IP L
Sbjct: 478 LTGEIPSGLSN-CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536
Query: 215 CRRLGGLYLSDNHLSGEIPRWL----GNLS--FLVD---IIMPNNNLEGLIP-----IEF 260
CR L L L+ N +G IP + G ++ F+ + + N+ ++ +EF
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596
Query: 261 CQLRFLRILDLSNNT-------IFG--TLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSP 311
+R ++ LS ++G T P+ + + + +S N + G + I P
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656
Query: 312 NLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNL 371
L L+L +N + GSIP+ + L L+ L L++N ++G IP + L + IDLS+NNL
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716
Query: 372 SGHIP 376
SG IP
Sbjct: 717 SGPIP 721
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 121/447 (27%), Positives = 202/447 (45%), Gaps = 52/447 (11%)
Query: 121 LMEFNLSRNAFNGSIPS--SFADMQMLARLDISYNQLTGEIPERMATGCF--SLEILALS 176
L +LSRN+ +G + + S L L++S N L + P +++ G SLE+L LS
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLDLS 159
Query: 177 NNSLQG-HIFSKKFS--LTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIP 233
NS+ G ++ S L L + GN SG++ +S+C L L +S N+ S IP
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP 217
Query: 234 RWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVH 293
+LG+ S L + + N L G L++L++S+N G +P ++ +
Sbjct: 218 -FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-LPLKSLQYLS 275
Query: 294 LSKNKIEGRLESVIPDSPNLVT-LDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIP 352
L++NK G + + + + +T LDLS N +G++P L L L++N GE+P
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335
Query: 353 VQ-LCQLKEVQLIDLSHNNLSGHIPPCLVNTSLS--------EGHDEPVAPTSSSCGRAS 403
+ L +++ ++++DLS N SG +P L N S S P+ P
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP--------- 386
Query: 404 GYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRI 463
N ++ Y + G P + + + ++S+ Y
Sbjct: 387 -----------NLCQNPKNTLQELYLQNNGFTGKIPPTL--SNCSELVSLHLSFNYLSGT 433
Query: 464 LTSMFG-------IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIE 516
+ S G + L N L GEIP ++ Y+ + L L N+LTG IP+ SN +
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493
Query: 517 SLDLSYNLLHGKIPSQLTVLTTLAVFR 543
+ LS N L G+IP + L LA+ +
Sbjct: 494 WISLSNNRLTGEIPKWIGRLENLAILK 520
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 131/484 (27%), Positives = 211/484 (43%), Gaps = 85/484 (17%)
Query: 126 LSRNAFNGSIPSSFADMQMLARLDISYNQLTG------------------------EIPE 161
LS + NGS+ S F L LD+S N L+G + P
Sbjct: 84 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 162 RMATGCF--SLEILALSNNSLQG-HIFSKKFS--LTNLMTLQLDGNNFSGEIPESLSKCR 216
+++ G SLE+L LS NS+ G ++ S L L + GN SG++ +S+C
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCV 200
Query: 217 RLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTI 276
L L +S N+ S IP +LG+ S L + + N L G L++L++S+N
Sbjct: 201 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
Query: 277 FGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVT-LDLSYNCLHGSIPNRIDRLP 335
G +P ++ + L++NK G + + + + +T LDLS N +G++P
Sbjct: 260 VGPIPP-LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 336 QLSYLLLANNYIEGEIPVQ-LCQLKEVQLIDLSHNNLSGHIPPCLVNTSLS--------- 385
L L L++N GE+P+ L +++ ++++DLS N SG +P L N S S
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378
Query: 386 -------------------------EGHDEPVAPTSSSCGRASGYASSYTKTALNATTPF 420
G + PT S+C S+ L+ T P
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF--NYLSGTIP- 435
Query: 421 SSSCG-----RGYPYALDYVGSRTPP----MGKEETIQFTTKNMSYYYQGRI--LTSMFG 469
SS G R L+ + P + ET+ +++ + T++
Sbjct: 436 -SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494
Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 529
I LS N+LTGEIP IG L + L LS+N+ +G IP + + + LDL+ NL +G I
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Query: 530 PSQL 533
P+ +
Sbjct: 555 PAAM 558
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 141/569 (24%), Positives = 228/569 (40%), Gaps = 131/569 (23%)
Query: 96 LATLDVSNNFFQGHIPVEIGTYL---PGLMEFNLSRNA--FNGSIPSSFADMQMLARLDI 150
L +LD+S N G PV T L GL N+S N F G + S + L LD+
Sbjct: 102 LTSLDLSRNSLSG--PVTTLTSLGSCSGLKFLNVSSNTLDFPGKV-SGGLKLNSLEVLDL 158
Query: 151 SYNQLTGE--IPERMATGCFSLEILALSNNSLQGHI-------------FSKKFS----- 190
S N ++G + ++ GC L+ LA+S N + G + S FS
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF 218
Query: 191 ---LTNLMTLQLDGN--------------------------------------------- 202
+ L L + GN
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAE 278
Query: 203 -NFSGEIPESLS-KCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIE- 259
F+GEIP+ LS C L GL LS NH G +P + G+ S L + + +NN G +P++
Sbjct: 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 338
Query: 260 FCQLRFLRILDLSNNTIFGTLPS---------------------------CFSPA-YIEQ 291
++R L++LDLS N G LP C +P +++
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398
Query: 292 VHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEI 351
++L N G++ + + LV+L LS+N L G+IP+ + L +L L L N +EGEI
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458
Query: 352 PVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTS----LSEGHDEPVAPTSSSCGRASGYAS 407
P +L +K ++ + L N+L+G IP L N + +S ++ GR A
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518
Query: 408 -SYTKTALNATTPFSSSCGRGYPYALD-----YVGSRTPPMGKEETIQFTTKNMSYYYQG 461
+ + + P R + LD + G+ M K+ + K + + G
Sbjct: 519 LKLSNNSFSGNIPAELGDCRSLIW-LDLNTNLFNGTIPAAMFKQ-----SGKIAANFIAG 572
Query: 462 R--ILTSMFGIDLSCN------KLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLK 513
+ + G+ C+ + G Q+ L+ + N++ G TF N
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632
Query: 514 QIESLDLSYNLLHGKIPSQLTVLTTLAVF 542
+ LD+SYN+L G IP ++ + L +
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFIL 661
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 130/305 (42%), Gaps = 30/305 (9%)
Query: 22 QLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPXXXXXXXXXXXXXXXXXXX 81
+L S+ LS GT P L L++ L L GE P
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478
Query: 82 XFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFAD 141
G + + L + +SNN G IP IG L L LS N+F+G+IP+ D
Sbjct: 479 T-GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGD 536
Query: 142 MQMLARLDISYNQLTGEIPERM--ATGCFSLEILA------LSNNSLQG--HIFSKKFSL 191
+ L LD++ N G IP M +G + +A + N+ ++ H
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596
Query: 192 TNLMTLQLDGNNFSGEIPESLSKCRRLGG--------------LYLSDNHLSGEIPRWLG 237
+ + QL N S P +++ R GG L +S N LSG IP+ +G
Sbjct: 597 QGIRSEQL--NRLSTRNPCNITS-RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653
Query: 238 NLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSP-AYIEQVHLSK 296
++ +L + + +N++ G IP E LR L ILDLS+N + G +P S + ++ LS
Sbjct: 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713
Query: 297 NKIEG 301
N + G
Sbjct: 714 NNLSG 718
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 54/112 (48%), Gaps = 26/112 (23%)
Query: 99 LDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGE 158
LD+S N G+IP EIG+ +P L NL N +GSIP D++ L LD+S N+L G
Sbjct: 637 LDMSYNMLSGYIPKEIGS-MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695
Query: 159 IPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPE 210
IP+ M+ +LT L + L NN SG IPE
Sbjct: 696 IPQAMS-------------------------ALTMLTEIDLSNNNLSGPIPE 722
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 96/387 (24%), Positives = 154/387 (39%), Gaps = 86/387 (22%)
Query: 222 YLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEG----LIPIEFC---------------- 261
+LS++H++G + + + S L + + N+L G L + C
Sbjct: 83 FLSNSHINGSVSGFKCSAS-LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 262 -------QLRFLRILDLSNNTIFG--TLPSCFSPAYIEQVHL--SKNKIEGRLESVIPDS 310
+L L +LDLS N+I G + S E HL S NKI G ++ +
Sbjct: 142 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRC 199
Query: 311 PNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNN 370
NL LD+S N IP + L +L ++ N + G+ + E++L+++S N
Sbjct: 200 VNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258
Query: 371 LSGHIPPCLVNT----SLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGR 426
G IPP + + SL+E + +G + A + T S
Sbjct: 259 FVGPIPPLPLKSLQYLSLAE-------------NKFTGEIPDFLSGACDTLTGLDLSGNH 305
Query: 427 GYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFG---IDLSCNKLTGEIPT 483
Y + GS + E++ ++ N S L M G +DLS N+ +GE+P
Sbjct: 306 FYGAVPPFFGSCS----LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361
Query: 484 QIGYLTK---------------------------IHALNLSHNNLTGTIPTTFSNLKQIE 516
+ L+ + L L +N TG IP T SN ++
Sbjct: 362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV 421
Query: 517 SLDLSYNLLHGKIPSQLTVLTTLAVFR 543
SL LS+N L G IPS L L+ L +
Sbjct: 422 SLHLSFNYLSGTIPSSLGSLSKLRDLK 448
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 90 IHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLD 149
I S L L++ +N G IP E+G L GL +LS N +G IP + + + ML +D
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGD-LRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710
Query: 150 ISYNQLTGEIPE 161
+S N L+G IPE
Sbjct: 711 LSNNNLSGPIPE 722
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 108/244 (44%), Gaps = 28/244 (11%)
Query: 135 IPSSFADMQMLARLDIS-YNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTN 193
IPSS A++ L L I N L G IP +A LT
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIA-------------------------KLTQ 102
Query: 194 LMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLE 253
L L + N SG IP+ LS+ + L L S N LSG +P + +L LV I N +
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 254 GLIPIEFCQL-RFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPN 312
G IP + + + +S N + G +P F+ + V LS+N +EG + N
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 313 LVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372
+ L+ N L + ++ L+ L L NN I G +P L QLK + +++S NNL
Sbjct: 223 TQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 373 GHIP 376
G IP
Sbjct: 282 GEIP 285
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 112/241 (46%), Gaps = 33/241 (13%)
Query: 129 NAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKK 188
N G IP + A + L L I++ ++G IP+ ++ +L L S N+L G +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSI 145
Query: 189 FSLTNLMTLQLDGNNFSGEIPESLSKCRRL-GGLYLSDNHLSGEIPRWLGNLSFLVDIIM 247
SL NL+ + DGN SG IP+S +L + +S N L+G+IP NL+
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN------- 198
Query: 248 PNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCF-SPAYIEQVHLSKNKIEGRLESV 306
L +DLS N + G F S +++HL+KN + L V
Sbjct: 199 ------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV 240
Query: 307 IPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDL 366
S NL LDL N ++G++P + +L L L ++ N + GEIP Q +Q D+
Sbjct: 241 -GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP----QGGNLQRFDV 295
Query: 367 S 367
S
Sbjct: 296 S 296
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 103/260 (39%), Gaps = 51/260 (19%)
Query: 256 IPIEFCQLRFLRILDLSN-NTIFGTLPSCFSPAYIEQVH---LSKNKIEGRLESVIPDSP 311
IP L +L L + N + G +P A + Q+H ++ + G + +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAI--AKLTQLHYLYITHTNVSGAIPDFLSQIK 125
Query: 312 NLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEV-QLIDLSHNN 370
LVTLD SYN L G++P I LP L + N I G IP ++ + +S N
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185
Query: 371 LSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPY 430
L+G IPP N +L A S + G
Sbjct: 186 LTGKIPPTFANLNL-------------------------------AFVDLSRNMLEGDAS 214
Query: 431 ALDYVGSRTPPMGKEETIQ--FTTKNMSYYYQGRILTS--MFGIDLSCNKLTGEIPTQIG 486
L G ++ Q KN + G++ S + G+DL N++ G +P +
Sbjct: 215 VL---------FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265
Query: 487 YLTKIHALNLSHNNLTGTIP 506
L +H+LN+S NNL G IP
Sbjct: 266 QLKFLHSLNVSFNNLCGEIP 285
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 79/170 (46%), Gaps = 28/170 (16%)
Query: 94 QKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADM-QMLARLDISY 152
+ L TLD S N G +P I + LP L+ N +G+IP S+ ++ + IS
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183
Query: 153 NQLTGEIPERMATGCFSLEILALSNNSLQG-------------HIFSKKFSLT------- 192
N+LTG+IP A +L + LS N L+G I K SL
Sbjct: 184 NRLTGKIPPTFAN--LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG 241
Query: 193 ---NLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNL 239
NL L L N G +P+ L++ + L L +S N+L GEIP+ GNL
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL 290
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 102/219 (46%), Gaps = 29/219 (13%)
Query: 321 NCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLV 380
N L G IP I +L QL YL + + + G IP L Q+K + +D S+N LSG +PP +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI- 145
Query: 381 NTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTP 440
+SL + + R SG + T + S R + + P
Sbjct: 146 -SSLPN-----LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR--------LTGKIP 191
Query: 441 PMGKEETIQFT--TKNMSYYYQGRILTSMFGID-------LSCNKLTGEIPTQIGYLTKI 491
P + F ++NM +G + +FG D L+ N L ++ ++G +
Sbjct: 192 PTFANLNLAFVDLSRNM---LEGDA-SVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNL 246
Query: 492 HALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 530
+ L+L +N + GT+P + LK + SL++S+N L G+IP
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%)
Query: 475 NKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLT 534
N L G IP I LT++H L ++H N++G IP S +K + +LD SYN L G +P ++
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 535 VLTTLA 540
L L
Sbjct: 147 SLPNLV 152
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 4/134 (2%)
Query: 94 QKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYN 153
+ L TL V++N Q +P+ + L L E L RN P F + L L + YN
Sbjct: 85 KNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143
Query: 154 QLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPE-SL 212
+L +P+ + SL+ L L NN L+ LT L TL+LD N +PE +
Sbjct: 144 ELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAF 201
Query: 213 SKCRRLGGLYLSDN 226
+L L L +N
Sbjct: 202 DSLEKLKMLQLQEN 215
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 2/144 (1%)
Query: 134 SIPS-SFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLT 192
S+PS +F + L L ++ N+L +P + +LE L +++N LQ L
Sbjct: 51 SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLV 109
Query: 193 NLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNL 252
NL L+LD N P +L L L N L L+ L ++ + NN L
Sbjct: 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169
Query: 253 EGLIPIEFCQLRFLRILDLSNNTI 276
+ + F +L L+ L L NN +
Sbjct: 170 KRVPEGAFDKLTELKTLKLDNNQL 193
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 1/174 (0%)
Query: 197 LQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLI 256
L L N S ++ + +L LYL+DN L L L + + +N L+ L
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 257 PIEFCQLRFLRILDLSNNTIFGTLPSCF-SPAYIEQVHLSKNKIEGRLESVIPDSPNLVT 315
F QL L L L N + P F S + + L N+++ + V +L
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE 161
Query: 316 LDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHN 369
L L N L D+L +L L L NN ++ L++++++ L N
Sbjct: 162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 4/158 (2%)
Query: 221 LYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTL 280
L L N LS + L+ L + + +N L+ L F +L+ L L +++N +
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 281 PSCFSP-AYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRI-DRLPQLS 338
F + ++ L +N+++ V L L L YN L S+P + D+L L
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLK 160
Query: 339 YLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIP 376
L L NN ++ +L E++ + L +N L +P
Sbjct: 161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVP 197
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 101/251 (40%), Gaps = 39/251 (15%)
Query: 149 DISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEI 208
D+ ++ ++P A +L L NN + +L NL TL L N S
Sbjct: 40 DLGLEKVPKDLPPDTA-------LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS 92
Query: 209 PESLSKCRRLGGLYLSDNHLSG---EIPRWLGNLSFLVDIIMPN-----NNLEGLIPIEF 260
P + + +L LYLS N L ++P+ L L + I N L +I +E
Sbjct: 93 PGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVEL 152
Query: 261 C------------------QLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGR 302
+L ++RI D T T+P P+ E +HL NKI
Sbjct: 153 GTNPLKSSGIENGAFQGMKKLSYIRIAD----TNITTIPQGLPPSLTE-LHLDGNKITKV 207
Query: 303 LESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQ 362
+ + NL L LS+N + + P L L L NN + ++P L K +Q
Sbjct: 208 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQ 266
Query: 363 LIDLSHNNLSG 373
++ L +NN+S
Sbjct: 267 VVYLHNNNISA 277
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 5/124 (4%)
Query: 138 SFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTL 197
+F M+ L+ + I+ +T IP+ + SL L L N + + L NL L
Sbjct: 166 AFQGMKKLSYIRIADTNIT-TIPQGLPP---SLTELHLDGNKITKVDAASLKGLNNLAKL 221
Query: 198 QLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIP 257
L N+ S SL+ L L+L++N L ++P L + ++ + + NNN+ +
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGS 280
Query: 258 IEFC 261
+FC
Sbjct: 281 NDFC 284
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH--- 526
+DL NK+T L +H L L +N ++ P F+ L ++E L LS N L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 527 GKIPSQLTVL 536
K+P L L
Sbjct: 117 EKMPKTLQEL 126
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 101/251 (40%), Gaps = 39/251 (15%)
Query: 149 DISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEI 208
D+ ++ ++P A +L L NN + +L NL TL L N S
Sbjct: 40 DLGLEKVPKDLPPDTA-------LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS 92
Query: 209 PESLSKCRRLGGLYLSDNHLSG---EIPRWLGNLSFLVDIIMPN-----NNLEGLIPIEF 260
P + + +L LYLS N L ++P+ L L + I N L +I +E
Sbjct: 93 PGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVEL 152
Query: 261 C------------------QLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGR 302
+L ++RI D T T+P P+ E +HL NKI
Sbjct: 153 GTNPLKSSGIENGAFQGMKKLSYIRIAD----TNITTIPQGLPPSLTE-LHLDGNKITKV 207
Query: 303 LESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQ 362
+ + NL L LS+N + + P L L L NN + ++P L K +Q
Sbjct: 208 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQ 266
Query: 363 LIDLSHNNLSG 373
++ L +NN+S
Sbjct: 267 VVYLHNNNISA 277
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 5/124 (4%)
Query: 138 SFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTL 197
+F M+ L+ + I+ +T IP+ + SL L L N + + L NL L
Sbjct: 166 AFQGMKKLSYIRIADTNIT-TIPQGLPP---SLTELHLDGNKITKVDAASLKGLNNLAKL 221
Query: 198 QLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIP 257
L N+ S SL+ L L+L++N L ++P L + ++ + + NNN+ +
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGS 280
Query: 258 IEFC 261
+FC
Sbjct: 281 NDFC 284
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH--- 526
+DL NK+T L +H L L +N ++ P F+ L ++E L LS N L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 527 GKIPSQLTVL 536
K+P L L
Sbjct: 117 EKMPKTLQEL 126
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 96/225 (42%), Gaps = 29/225 (12%)
Query: 172 ILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGE 231
+L L NN + L +L L L N S ++ S R+L LY+S NHL E
Sbjct: 58 LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-E 116
Query: 232 IPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTI--FGTLPSCFS---- 285
IP L S LV++ + +N + + F LR + +++ N + G P F
Sbjct: 117 IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKL 174
Query: 286 -----------------PAYIEQVHLSKNKIEG-RLESVIPDSPNLVTLDLSYNCLHGSI 327
P + ++HL NKI+ LE ++ S L L L +N +
Sbjct: 175 NYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYS-KLYRLGLGHNQIRMIE 233
Query: 328 PNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372
+ LP L L L NN + +P L LK +Q++ L NN++
Sbjct: 234 NGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNIT 277
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 6/133 (4%)
Query: 133 GSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLT 192
G P +F ++ L L IS +LTG IP+ + +L L L +N +Q +
Sbjct: 163 GFEPGAFDGLK-LNYLRISEAKLTG-IPKDLPE---TLNELHLDHNKIQAIELEDLLRYS 217
Query: 193 NLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNL 252
L L L N SLS L L+L +N LS +P L +L L + + NN+
Sbjct: 218 KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276
Query: 253 EGLIPIEFCQLRF 265
+ +FC + F
Sbjct: 277 TKVGVNDFCPVGF 289
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
Query: 118 LPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSN 177
L L L NA +F D+ L L + N+++ +PER G SL+ L L
Sbjct: 127 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQ 185
Query: 178 NSLQGHIFSKKF-SLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDN 226
N + H+ F L LMTL L NN S E+L+ R L L L+DN
Sbjct: 186 NRV-AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 70/178 (39%), Gaps = 4/178 (2%)
Query: 199 LDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNN-NLEGLIP 257
L GN S S CR L L+L N L+ L+ L + + +N L + P
Sbjct: 38 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 97
Query: 258 IEFCQLRFLRILDLSNNTIFGTLPSCFSP-AYIEQVHLSKNKIEGRLESVIPDSPNLVTL 316
F L L L L + P F A ++ ++L N ++ + D NL L
Sbjct: 98 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 157
Query: 317 DLSYNCLHGSIPNRIDR-LPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSG 373
L N + S+P R R L L LLL N + P L + + L NNLS
Sbjct: 158 FLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 214
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
Query: 118 LPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSN 177
L L L NA +F D+ L L + N+++ +PER G SL+ L L
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQ 186
Query: 178 NSLQGHIFSKKF-SLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDN 226
N + H+ F L LMTL L NN S E+L+ R L L L+DN
Sbjct: 187 NRV-AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 70/178 (39%), Gaps = 4/178 (2%)
Query: 199 LDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNN-NLEGLIP 257
L GN S S CR L L+L N L+ L+ L + + +N L + P
Sbjct: 39 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98
Query: 258 IEFCQLRFLRILDLSNNTIFGTLPSCFSP-AYIEQVHLSKNKIEGRLESVIPDSPNLVTL 316
F L L L L + P F A ++ ++L N ++ + D NL L
Sbjct: 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158
Query: 317 DLSYNCLHGSIPNRIDR-LPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSG 373
L N + S+P R R L L LLL N + P L + + L NNLS
Sbjct: 159 FLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 111/446 (24%), Positives = 179/446 (40%), Gaps = 61/446 (13%)
Query: 109 HIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCF 168
HIP ++ + + L NL+ N P++F LA LD +N ++ PE +
Sbjct: 18 HIPDDLPSNITVL---NLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPE-LCQILP 73
Query: 169 SLEILALSNNSLQGHIFSKKFSL-TNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNH 227
L++L L +N L I + F TNL L L N+ + L L LS N
Sbjct: 74 LLKVLNLQHNEL-SQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNG 132
Query: 228 LSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFL-----RILDLSNNTIFGTLPS 282
LS LG L ++ ++ + +L FL R LDLS+N + P
Sbjct: 133 LSSTK---LGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPG 189
Query: 283 CFSPAYIEQVHLSKNKIEGRLESVIPDSPNL---VTLDLSYNCLHGSIPNRIDRLPQLSY 339
CF G+L +++ ++ L +T L + + SI N
Sbjct: 190 CFQTI-------------GKLFALLLNNAQLNPHLTEKLCWELSNTSIQN---------- 226
Query: 340 LLLANNYIEGEIPVQLCQLKEVQL--IDLSHNNL------SGHIPPCLVNTSLSEGHDEP 391
L LANN + LK L +DLS+NNL S P L SL + +
Sbjct: 227 LSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQR 286
Query: 392 VAPTSS---SCGRASGYASSYTKTALN-ATTPFSSSCGRGYPYALDYVGSRTPPMGKEET 447
++P S S R ++TK +++ A+ P + L+Y+ + ++
Sbjct: 287 LSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKS 346
Query: 448 IQFT-TKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIP 506
FT ++ Y + TS+ LT E + + + + LNL+ N+++
Sbjct: 347 NTFTGLVSLKYLSLSKTFTSL-------QTLTNETFVSLAH-SPLLTLNLTKNHISKIAN 398
Query: 507 TTFSNLKQIESLDLSYNLLHGKIPSQ 532
TFS L Q+ LDL N + K+ Q
Sbjct: 399 GTFSWLGQLRILDLGLNEIEQKLSGQ 424
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 108/278 (38%), Gaps = 24/278 (8%)
Query: 115 GTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILA 174
G L + +LS N + SF+ + L L + YN + P R G +L L+
Sbjct: 244 GLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSP-RSFYGLSNLRYLS 302
Query: 175 LSNN------SLQGHIFSKKFS---LTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSD 225
L SL H FS L L L +D NN + + L L LS
Sbjct: 303 LKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSK 362
Query: 226 NHLSGEIPRWLGNLSF-------LVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFG 278
S + L N +F L+ + + N++ + F L LRILDL N I
Sbjct: 363 TFTSLQT---LTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQ 419
Query: 279 TLP--SCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGS--IPNRIDRL 334
L I +++LS NK S P+L L L L P+ L
Sbjct: 420 KLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPL 479
Query: 335 PQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372
L+ L L+NN I L L+ ++++D HNNL+
Sbjct: 480 RNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLA 517
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 489 TKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVF 542
+ I LNL+HN L PT F+ Q+ LD +N + P +L L V
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVL 78
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 107/230 (46%), Gaps = 52/230 (22%)
Query: 135 IPSSFAD-MQMLARLDISYNQLTGEIPERMA-TGCF-SLEILALSNNSLQ-----GHIFS 186
+P SF+ ++ L LD+S N + E + A G + SL+ L LS N L+ G I
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL- 383
Query: 187 KKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDII 246
+L NL +L + N F +P+S C+ W + FL
Sbjct: 384 --LTLKNLTSLDISRNTFH-PMPDS---CQ------------------WPEKMRFL---- 415
Query: 247 MPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESV 306
N + G+ ++ C + L +LD+SNN + S F P ++++++S+NK++
Sbjct: 416 --NLSSTGIRVVKTCIPQTLEVLDVSNNNLDSF--SLFLPR-LQELYISRNKLK-----T 465
Query: 307 IPDS---PNLVTLDLSYNCLHGSIPNRI-DRLPQLSYLLLANNYIEGEIP 352
+PD+ P L+ + +S N L S+P+ I DRL L + L N + P
Sbjct: 466 LPDASLFPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 514
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 19/140 (13%)
Query: 243 VDIIMPNNNLEGLIPIEFCQ-LRFLRILDLSNNTIF----------GTLPSCFSPAYIEQ 291
V I N+ L+P F Q L+ L LDLS N + G PS + Q
Sbjct: 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS-LQTLVLSQ 370
Query: 292 VHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEI 351
HL + G ++ NL +LD+S N H +P+ ++ +L L++ I
Sbjct: 371 NHLRSMQKTGE---ILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR--- 423
Query: 352 PVQLCQLKEVQLIDLSHNNL 371
V+ C + ++++D+S+NNL
Sbjct: 424 VVKTCIPQTLEVLDVSNNNL 443
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 81/180 (45%), Gaps = 5/180 (2%)
Query: 96 LATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPS-SFADMQMLARLDISYNQ 154
L TL++ +N+ IP YL L E L N SIPS +F + L RLD+ +
Sbjct: 125 LNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELK 182
Query: 155 LTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSK 214
I E G F+L+ L L +++ L L L++ GN+F P S
Sbjct: 183 KLEYISEGAFEGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFPEIRPGSFHG 240
Query: 215 CRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNN 274
L L++ ++ +S L+ LV++ + +NNL L F LR+L L L +N
Sbjct: 241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 107/230 (46%), Gaps = 52/230 (22%)
Query: 135 IPSSFAD-MQMLARLDISYNQLTGEIPERMA-TGCF-SLEILALSNNSLQ-----GHIFS 186
+P SF+ ++ L LD+S N + E + A G + SL+ L LS N L+ G I
Sbjct: 351 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL- 409
Query: 187 KKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDII 246
+L NL +L + N F +P+S C+ W + FL
Sbjct: 410 --LTLKNLTSLDISRNTF-HPMPDS---CQ------------------WPEKMRFL---- 441
Query: 247 MPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESV 306
N + G+ ++ C + L +LD+SNN + S F P ++++++S+NK++
Sbjct: 442 --NLSSTGIRVVKTCIPQTLEVLDVSNNNLDSF--SLFLPR-LQELYISRNKLK-----T 491
Query: 307 IPDS---PNLVTLDLSYNCLHGSIPNRI-DRLPQLSYLLLANNYIEGEIP 352
+PD+ P L+ + ++ N L S+P+ I DRL L + L N + P
Sbjct: 492 LPDASLFPVLLVMKIASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 540
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 19/140 (13%)
Query: 243 VDIIMPNNNLEGLIPIEFCQ-LRFLRILDLSNNTIF----------GTLPSCFSPAYIEQ 291
V I N+ L+P F Q L+ L LDLS N + G PS + Q
Sbjct: 338 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS-LQTLVLSQ 396
Query: 292 VHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEI 351
HL + G ++ NL +LD+S N H +P+ ++ +L L++ I
Sbjct: 397 NHLRSMQKTGE---ILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR--- 449
Query: 352 PVQLCQLKEVQLIDLSHNNL 371
V+ C + ++++D+S+NNL
Sbjct: 450 VVKTCIPQTLEVLDVSNNNL 469
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 162 RMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGL 221
R T C L+ + +N +G K ++ L LDGN F+ +P+ LS + L +
Sbjct: 3 RCPTECTCLDTVVRCSN--KGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLI 59
Query: 222 YLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTI 276
LS+N +S + N++ L+ +I+ N L + P F L+ LR+L L N I
Sbjct: 60 DLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI 114
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 100 DVSNNFFQGH----IPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQL 155
DV+ + G+ +P E+ Y L +LS N + SF++M L L +SYN+L
Sbjct: 32 DVTELYLDGNQFTLVPKELSNY-KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 156 TGEIPERMATGCFSLEILALSNNSL 180
IP R G SL +L+L N +
Sbjct: 91 RC-IPPRTFDGLKSLRLLSLHGNDI 114
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
Query: 436 GSRTPPMGK--EETIQFTTKNMSYYYQG--RILTSMFGIDLSCNKLTGEIPTQIGYLTKI 491
GSR P + ++ + K + +G R +T ++ L N+ T +P ++ +
Sbjct: 1 GSRCPTECTCLDTVVRCSNKGLKVLPKGIPRDVTELY---LDGNQFT-LVPKELSNYKHL 56
Query: 492 HALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVF 542
++LS+N ++ +FSN+ Q+ +L LSYN L P L +L +
Sbjct: 57 TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL 107
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 266 LRILDLSNNTIFGTLPSCFSPAY-IEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLH 324
+R LDLS+ +F F ++ ++L+ NKI + NL L+LSYN L
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327
Query: 325 GSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSG-HIPPCLVNTS 383
+ LP+++Y+ L N+I L+++Q +DL N L+ H P + +
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIF 387
Query: 384 LS 385
LS
Sbjct: 388 LS 389
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 121/289 (41%), Gaps = 48/289 (16%)
Query: 118 LPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSN 177
L L NL+ N N +F + L L++SYN L GE+ G + + L
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQK 347
Query: 178 NS---LQGHIFSKKFSLTNLMTLQLDGN-----NFSGEIPESLSKCRRLGGLYLSDNHLS 229
N +Q F KF L L TL L N +F IP+ ++LS N L
Sbjct: 348 NHIAIIQDQTF--KF-LEKLQTLDLRDNALTTIHFIPSIPD----------IFLSGNKLV 394
Query: 230 GEIPRWLGNLSFLVDII-MPNNNLEGLIPIEF-CQLRFLRILDLSNNTIFGTLPSCFSPA 287
L ++ ++I + N LE L + F ++ L+IL L+ N F + +P+
Sbjct: 395 T-----LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR-FSSCSGDQTPS 448
Query: 288 Y---IEQVHLSKNKIEGRLES-----VIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSY 339
+EQ+ L +N ++ E+ V +L L L++N L+ P L L
Sbjct: 449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG 508
Query: 340 LLLANNYI----EGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSL 384
L L +N + ++P L +++D+S N L P V+ S+
Sbjct: 509 LSLNSNRLTVLSHNDLPANL------EILDISRNQLLAPNPDVFVSLSV 551
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 488 LTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 525
L + LNL++N + F L ++ L+LSYNLL
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 50/114 (43%), Gaps = 18/114 (15%)
Query: 119 PGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTG------EIPERMATGCFSLEI 172
PGL+E +LS N + F MQ L RL IS N+L IP +L++
Sbjct: 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP--------TLKV 299
Query: 173 LALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDN 226
L LS+N L H+ + L L LD N+ + LS L L LS N
Sbjct: 300 LDLSHNHL-LHVERNQPQFDRLENLYLDHNSI---VTLKLSTHHTLKNLTLSHN 349
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 102/238 (42%), Gaps = 35/238 (14%)
Query: 109 HIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCF 168
++P + +P L L RN + F + L L +S N L ER+ F
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-----ERIEDDTF 161
Query: 169 ----SLEILALSNN-------SLQGHIFSKKFSLTNLMTL-------QLDGNNFSGEIPE 210
SL+ L LS+N SL +F S L TL +LD ++ S +
Sbjct: 162 QATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR 221
Query: 211 SLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILD 270
L L L N+L+ WL N LV++ + N LE ++ F +++ L L
Sbjct: 222 GPVNVE-LTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278
Query: 271 LSNNTIFGT------LPS--CFSPAYIEQVHLSKNKIE-GRLESVIPDSPNLVTLDLS 319
+SNN + +P+ ++ +H+ +N+ + RLE++ D ++VTL LS
Sbjct: 279 ISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLS 336
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 84/200 (42%), Gaps = 39/200 (19%)
Query: 209 PESLSKCRRLGGLYLSDNHLSGEIPRWL-GNLSFLVDIIMPNNNLEGLIPIEFCQLRFLR 267
P L L L N LS +PR + N L + M NNNLE + F L+
Sbjct: 110 PHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168
Query: 268 ILDLSNNTI----FGTLPSCFS-------------PAYIEQVHLSKNKIEG--------- 301
L LS+N + +PS F P +E++ S N I
Sbjct: 169 NLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL 228
Query: 302 ---RLE-------SVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEI 351
+L+ + + + P LV +DLSYN L + + ++ +L L ++NN + +
Sbjct: 229 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-L 287
Query: 352 PVQLCQLKEVQLIDLSHNNL 371
+ + ++++DLSHN+L
Sbjct: 288 NLYGQPIPTLKVLDLSHNHL 307
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 21/190 (11%)
Query: 187 KKFSLTNLMTLQLDGNNFSGEIPE-SLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDI 245
++ L NL LQ++ EI + + + LY+ N + P N+ L +
Sbjct: 69 RQVELLNLNDLQIE------EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122
Query: 246 IMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCF-SPAYIEQVHLSKNKIEGRLE 304
++ N+L L F L L +SNN + F + ++ + LS N++
Sbjct: 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL 182
Query: 305 SVIPDSPNLVTLDLSYNCLHG-SIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQL 363
S+I P+L ++SYN L +IP ++ L + N + G + V+L LK
Sbjct: 183 SLI---PSLFHANVSYNLLSTLAIPIAVEELDASHNSI---NVVRGPVNVELTILK---- 232
Query: 364 IDLSHNNLSG 373
L HNNL+
Sbjct: 233 --LQHNNLTD 240
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 266 LRILDLSNNTIFGTLPSCFSP-AYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLH 324
++ DLS + IF L S FS +EQ+ L++N+I ++ +L+ L+LS N L
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL- 335
Query: 325 GSIPNRI-DRLPQLSYLLLANNYIEG 349
GSI +R+ + L +L L L+ N+I
Sbjct: 336 GSIDSRMFENLDKLEVLDLSYNHIRA 361
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 431 ALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTK 490
L+ G +T + K + S++ T + + L+ N++ LT
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSVFSHF------TDLEQLTLAQNEINKIDDNAFWGLTH 324
Query: 491 IHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
+ LNLS N L F NL ++E LDLSYN
Sbjct: 325 LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
Query: 118 LPGLMEFNLSRNAFNGSIPSS-FADMQMLARLDISYNQLTGEIPERMATGCFSLEILALS 176
L L++ NLS+N F GSI S F ++ L LD+SYN + + ++ G +L+ LAL
Sbjct: 322 LTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALD 379
Query: 177 NNSLQG---HIFSKKFSLTNLMTLQLDGNNFSGEIPE 210
N L+ IF + LT+L + L N + P
Sbjct: 380 TNQLKSVPDGIFDR---LTSLQKIWLHTNPWDCSCPR 413
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 50/114 (43%), Gaps = 18/114 (15%)
Query: 119 PGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTG------EIPERMATGCFSLEI 172
PGL+E +LS N + F MQ L RL IS N+L IP +L++
Sbjct: 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP--------TLKV 305
Query: 173 LALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDN 226
L LS+N L H+ + L L LD N+ + LS L L LS N
Sbjct: 306 LDLSHNHL-LHVERNQPQFDRLENLYLDHNSI---VTLKLSTHHTLKNLTLSHN 355
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 102/238 (42%), Gaps = 35/238 (14%)
Query: 109 HIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCF 168
++P + +P L L RN + F + L L +S N L ER+ F
Sbjct: 113 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-----ERIEDDTF 167
Query: 169 ----SLEILALSNN-------SLQGHIFSKKFSLTNLMTL-------QLDGNNFSGEIPE 210
SL+ L LS+N SL +F S L TL +LD ++ S +
Sbjct: 168 QATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR 227
Query: 211 SLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILD 270
L L L N+L+ WL N LV++ + N LE ++ F +++ L L
Sbjct: 228 GPVNVE-LTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284
Query: 271 LSNNTIFGT------LPS--CFSPAYIEQVHLSKNKIE-GRLESVIPDSPNLVTLDLS 319
+SNN + +P+ ++ +H+ +N+ + RLE++ D ++VTL LS
Sbjct: 285 ISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLS 342
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 84/197 (42%), Gaps = 51/197 (25%)
Query: 218 LGGLYLSDNHLSGEIPRWL-GNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTI 276
L L L N LS +PR + N L + M NNNLE + F L+ L LS+N +
Sbjct: 125 LTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183
Query: 277 ----FGTLPSCFS-------------PAYIEQV---HLSKNKIEG---------RLE--- 304
+PS F P +E++ H S N + G +L+
Sbjct: 184 THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN 243
Query: 305 ----SVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEG------EIPVQ 354
+ + + P LV +DLSYN L + + ++ +L L ++NN + IP
Sbjct: 244 LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT- 302
Query: 355 LCQLKEVQLIDLSHNNL 371
++++DLSHN+L
Sbjct: 303 ------LKVLDLSHNHL 313
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 89/213 (41%), Gaps = 25/213 (11%)
Query: 187 KKFSLTNLMTLQLDGNNFSGEIPE-SLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDI 245
++ L NL LQ++ EI + + + LY+ N + P N+ L +
Sbjct: 75 RQVELLNLNDLQIE------EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128
Query: 246 IMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCF-SPAYIEQVHLSKNKIEGRLE 304
++ N+L L F L L +SNN + F + ++ + LS N++
Sbjct: 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL 188
Query: 305 SVIPDSPNLVTLDLSYNCLHG-SIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQL 363
S+I P+L ++SYN L +IP ++ L + N + G + V+L LK
Sbjct: 189 SLI---PSLFHANVSYNLLSTLAIPIAVEELDASHNSI---NVVRGPVNVELTILK---- 238
Query: 364 IDLSHNNLSGHIP----PCLVNTSLSEGHDEPV 392
L HNNL+ P LV LS E +
Sbjct: 239 --LQHNNLTDTAWLLNYPGLVEVDLSYNELEKI 269
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 72/177 (40%), Gaps = 4/177 (2%)
Query: 199 LDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNN-NLEGLIP 257
L GN S S CR L L+L N L+G L+ L + + +N L + P
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97
Query: 258 IEFCQLRFLRILDLSNNTIFGTLPSCFSP-AYIEQVHLSKNKIEGRLESVIPDSPNLVTL 316
F L L L L + P F A ++ ++L N ++ ++ D NL L
Sbjct: 98 TTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHL 157
Query: 317 DLSYNCLHGSIPNRIDR-LPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372
L N + S+P R L L LLL N++ P L + + L NNLS
Sbjct: 158 FLHGNRI-PSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS 213
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 77/186 (41%), Gaps = 3/186 (1%)
Query: 90 IHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNA-FNGSIPSSFADMQMLARL 148
S + L L + +N G I T L L + +LS NA P++F + L L
Sbjct: 51 FQSCRNLTILWLHSNALAG-IDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTL 109
Query: 149 DISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEI 208
+ L E+ + G +L+ L L +N+LQ + L NL L L GN
Sbjct: 110 HLDRCGLQ-ELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVP 168
Query: 209 PESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRI 268
+ L L L NH++ P +L L+ + + NNL L LR L+
Sbjct: 169 EHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQY 228
Query: 269 LDLSNN 274
L L++N
Sbjct: 229 LRLNDN 234
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 485 IGYLTKIHALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVL 536
IG+L + LN++HN + +P FSNL +E LDLS N + + L VL
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 196
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 3/150 (2%)
Query: 130 AFNGSI--PSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSK 187
+FNG I S+F ++ L LD ++ L + +L L +S+ +
Sbjct: 405 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 464
Query: 188 KFSLTNLMTLQLDGNNFSGE-IPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDII 246
L++L L++ GN+F +P+ ++ R L L LS L P +LS L +
Sbjct: 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524
Query: 247 MPNNNLEGLIPIEFCQLRFLRILDLSNNTI 276
M +NN L + L L++LD S N I
Sbjct: 525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
+DLS +L PT L+ + LN+SHNN + L ++ LD S N
Sbjct: 499 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 552
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 485 IGYLTKIHALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVL 536
IG+L + LN++HN + +P FSNL +E LDLS N + + L VL
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 485 IGYLTKIHALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVL 536
IG+L + LN++HN + +P FSNL +E LDLS N + + L VL
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 174
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 485 IGYLTKIHALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVL 536
IG+L + LN++HN + +P FSNL +E LDLS N + + L VL
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 173
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 485 IGYLTKIHALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVL 536
IG+L + LN++HN + +P FSNL +E LDLS N + + L VL
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 485 IGYLTKIHALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVL 536
IG+L + LN++HN + +P FSNL +E LDLS N + + L VL
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 174
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 485 IGYLTKIHALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVL 536
IG+L + LN++HN + +P FSNL +E LDLS N + + L VL
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 173
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 485 IGYLTKIHALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVL 536
IG+L + LN++HN + +P FSNL +E LDLS N + + L VL
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 3/150 (2%)
Query: 130 AFNGSI--PSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSK 187
+FNG I S+F ++ L LD ++ L + +L L +S+ +
Sbjct: 381 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440
Query: 188 KFSLTNLMTLQLDGNNFSGE-IPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDII 246
L++L L++ GN+F +P+ ++ R L L LS L P +LS L +
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 247 MPNNNLEGLIPIEFCQLRFLRILDLSNNTI 276
M +NN L + L L++LD S N I
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
+DLS +L PT L+ + LN+SHNN + L ++ LD S N
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 528
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 99/258 (38%), Gaps = 35/258 (13%)
Query: 124 FNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGH 183
NL+ N ++F L LD+ +N ++ PE + L++L L +N L
Sbjct: 40 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNEL-SQ 97
Query: 184 IFSKKFSL-TNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFL 242
+ K F+ TNL L L N+ K + L L LS N LS L L
Sbjct: 98 LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENL 157
Query: 243 VDIIMPNNNLEGLIPIEFCQL--RFLRILDLSNNTIFGTLPSCF---------------- 284
++++ NN ++ L E L+ L+LS+N I P CF
Sbjct: 158 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 217
Query: 285 SPAYIEQVHLSKNKIEGRLESVIPDS--------------PNLVTLDLSYNCLHGSIPNR 330
P+ E++ L R S+ NL LDLSYN L+ +
Sbjct: 218 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 277
Query: 331 IDRLPQLSYLLLANNYIE 348
LPQL Y L N I+
Sbjct: 278 FAWLPQLEYFFLEYNNIQ 295
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 471 DLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 530
D S KLT ++P + T I LNL+HN L F+ Q+ SLD+ +N + P
Sbjct: 20 DCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 76
Query: 531 SQLTVLTTLAVF 542
L L V
Sbjct: 77 ELCQKLPMLKVL 88
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 99/258 (38%), Gaps = 35/258 (13%)
Query: 124 FNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGH 183
NL+ N ++F L LD+ +N ++ PE + L++L L +N L
Sbjct: 35 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNEL-SQ 92
Query: 184 IFSKKFSL-TNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFL 242
+ K F+ TNL L L N+ K + L L LS N LS L L
Sbjct: 93 LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENL 152
Query: 243 VDIIMPNNNLEGLIPIEFCQL--RFLRILDLSNNTIFGTLPSCF---------------- 284
++++ NN ++ L E L+ L+LS+N I P CF
Sbjct: 153 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 212
Query: 285 SPAYIEQVHLSKNKIEGRLESVIPDS--------------PNLVTLDLSYNCLHGSIPNR 330
P+ E++ L R S+ NL LDLSYN L+ +
Sbjct: 213 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 272
Query: 331 IDRLPQLSYLLLANNYIE 348
LPQL Y L N I+
Sbjct: 273 FAWLPQLEYFFLEYNNIQ 290
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 471 DLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 530
D S KLT ++P + T I LNL+HN L F+ Q+ SLD+ +N + P
Sbjct: 15 DCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 71
Query: 531 SQLTVLTTLAVF 542
L L V
Sbjct: 72 ELCQKLPMLKVL 83
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 99/258 (38%), Gaps = 35/258 (13%)
Query: 124 FNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGH 183
NL+ N ++F L LD+ +N ++ PE + L++L L +N L
Sbjct: 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNEL-SQ 87
Query: 184 IFSKKFSL-TNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFL 242
+ K F+ TNL L L N+ K + L L LS N LS L L
Sbjct: 88 LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENL 147
Query: 243 VDIIMPNNNLEGLIPIEFCQL--RFLRILDLSNNTIFGTLPSCF---------------- 284
++++ NN ++ L E L+ L+LS+N I P CF
Sbjct: 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207
Query: 285 SPAYIEQVHLSKNKIEGRLESVIPDS--------------PNLVTLDLSYNCLHGSIPNR 330
P+ E++ L R S+ NL LDLSYN L+ +
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267
Query: 331 IDRLPQLSYLLLANNYIE 348
LPQL Y L N I+
Sbjct: 268 FAWLPQLEYFFLEYNNIQ 285
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 471 DLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 530
D S KLT ++P + T I LNL+HN L F+ Q+ SLD+ +N + P
Sbjct: 10 DCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 66
Query: 531 SQLTVLTTLAVF 542
L L V
Sbjct: 67 ELCQKLPMLKVL 78
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 112/267 (41%), Gaps = 24/267 (8%)
Query: 99 LDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGE 158
LD+ N + E ++ P L E L+ N + P +F ++ L L + N+L
Sbjct: 37 LDLGKNRIKTLNQDEFASF-PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-L 94
Query: 159 IPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRL 218
IP + TG +L L +S N + + L NL +L++ N+ + S L
Sbjct: 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL 154
Query: 219 GGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFG 278
L L +L+ L +L L+ + + + N+ + F +L L++L++S+
Sbjct: 155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214
Query: 279 TL-PSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQL 337
T+ P+C + + ++ + + L L+LSYN +
Sbjct: 215 TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI-------------- 260
Query: 338 SYLLLANNYIEGEIPVQLCQLKEVQLI 364
+ IEG + +L +L+E+QL+
Sbjct: 261 -------STIEGSMLHELLRLQEIQLV 280
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 79/182 (43%), Gaps = 4/182 (2%)
Query: 96 LATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQL 155
L TL + +N + IP+ + T L L + ++S N + F D+ L L++ N L
Sbjct: 82 LRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140
Query: 156 TGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKC 215
I R +G SLE L L +L L L+ L+L N + S +
Sbjct: 141 V-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRL 199
Query: 216 RRLGGLYLSDN-HLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNN 274
RL L +S +L P L L+ L + + + NL + + L +LR L+LS N
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLN-LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258
Query: 275 TI 276
I
Sbjct: 259 PI 260
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 470 IDLSCNKLTGE--IPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG 527
+DLS N + Q+ L+ + LNLSHN G F Q+E LDL++ LH
Sbjct: 352 LDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHI 411
Query: 528 KIP 530
P
Sbjct: 412 NAP 414
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 21/184 (11%)
Query: 158 EIPERMATGCFSLEILALSNNSLQGHIFSKKFS-----LTNLMTLQLDGNNFSGEIPESL 212
+I M G + + +L+ LQ H FS S T L L L + G +P +
Sbjct: 239 DISSAMLKGLCEMSVESLN---LQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGM 294
Query: 213 SKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLE---GLIPIEFCQLRFLRIL 269
L L LS NH N L + + N + G+ +E +L L+ L
Sbjct: 295 KGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLE--KLGNLQTL 352
Query: 270 DLSNNTIFGTLPSCFSP-----AYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLH 324
DLS+N I + C S ++++ ++LS N+ G + P L LDL++ LH
Sbjct: 353 DLSHNDIEAS--DCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLH 410
Query: 325 GSIP 328
+ P
Sbjct: 411 INAP 414
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 78/336 (23%), Positives = 137/336 (40%), Gaps = 56/336 (16%)
Query: 235 WLGNLSFLVDIIMPNNNLEGL--IPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQV 292
WLG + D + + L+GL + +E L+ R D+S+ T CF+ ++++
Sbjct: 228 WLGTFEDIDDEDISSAMLKGLCEMSVESLNLQEHRFSDISSTTF-----QCFTQ--LQEL 280
Query: 293 HLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIP 352
L+ ++G L S + L L LS N P L++L + N + +
Sbjct: 281 DLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLG 339
Query: 353 VQ-LCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSE------GHDEPVAPTSSS---CGRA 402
V L +L +Q +DLSHN++ L +LS H+EP+ S + C +
Sbjct: 340 VGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQL 399
Query: 403 SGYASSYTKTALNA-TTPFS----------SSCG---------RGYP----------YAL 432
++T+ +NA +PF + C G P +
Sbjct: 400 ELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQ 459
Query: 433 DYVGSRT---PPMGKEETIQFTTKNMSYYYQGRI--LTSMFGIDLSCNKLTGEIPTQIGY 487
D ++T +G E + ++ + Q L M +DLS N LT + + +
Sbjct: 460 DGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSH 519
Query: 488 LTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
L I+ LNL+ N++ P L Q +++LS+N
Sbjct: 520 LKGIY-LNLAANSINIISPRLLPILSQQSTINLSHN 554
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 74/180 (41%), Gaps = 5/180 (2%)
Query: 96 LATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPS-SFADMQMLARLDISYNQ 154
L TL++ +N IP YL L E L N SIPS +F + L RLD+ +
Sbjct: 114 LNTLELFDNRLTT-IPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELK 171
Query: 155 LTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSK 214
I E G +L L L+ +L+ L L L L GN+ S P S
Sbjct: 172 RLSYISEGAFEGLSNLRYLNLAMCNLRE--IPNLTPLIKLDELDLSGNHLSAIRPGSFQG 229
Query: 215 CRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNN 274
L L++ + + NL LV+I + +NNL L F L L + L +N
Sbjct: 230 LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 97 ATLDVSNNFF--QGHIPVEIGTYLP-GLMEFNLSRNAFNGSIPSSFADMQMLARLDISYN 153
A SNN +G EI T LP + E L +N P +F+ + L R+D+S N
Sbjct: 7 AACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN 66
Query: 154 QLTGEIPERMATGCFSLEILALSNNSL 180
Q++ P+ G SL L L N +
Sbjct: 67 QISELAPDAFQ-GLRSLNSLVLYGNKI 92
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 95/246 (38%), Gaps = 68/246 (27%)
Query: 215 CRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIE--------------- 259
L + S+N L+ P L NL+ LVDI+M NN + + P+
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 119
Query: 260 -----FCQLRFLRILDLSNNTI----------------FGTLPSCFSP----AYIEQVHL 294
L L L+LS+NTI FG + P +E++ +
Sbjct: 120 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDI 179
Query: 295 SKNKIEG--------RLESVIPD-------SPNLVTLDLSYNCLHGSIPNRIDRLPQLSY 339
S NK+ LES+I +P + +L L+G+ I L L+
Sbjct: 180 SSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTN 239
Query: 340 LL---LANNYIEGEIPVQ-LCQLKEVQLIDLSHNNLSGHIP----PCLVNTSLSEGHDEP 391
L LANN I P+ L +L E++ L N +S P L N L+E E
Sbjct: 240 LTDLDLANNQISNLAPLSGLTKLTELK---LGANQISNISPLAGLTALTNLELNENQLED 296
Query: 392 VAPTSS 397
++P S+
Sbjct: 297 ISPISN 302
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 95/246 (38%), Gaps = 68/246 (27%)
Query: 215 CRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIE--------------- 259
L + S+N L+ P L NL+ LVDI+M NN + + P+
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 119
Query: 260 -----FCQLRFLRILDLSNNTI----------------FGTLPSCFSP----AYIEQVHL 294
L L L+LS+NTI FG + P +E++ +
Sbjct: 120 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDI 179
Query: 295 SKNKIEG--------RLESVIPD-------SPNLVTLDLSYNCLHGSIPNRIDRLPQLSY 339
S NK+ LES+I +P + +L L+G+ I L L+
Sbjct: 180 SSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTN 239
Query: 340 LL---LANNYIEGEIPVQ-LCQLKEVQLIDLSHNNLSGHIP----PCLVNTSLSEGHDEP 391
L LANN I P+ L +L E++ L N +S P L N L+E E
Sbjct: 240 LTDLDLANNQISNLAPLSGLTKLTELK---LGANQISNISPLAGLTALTNLELNENQLED 296
Query: 392 VAPTSS 397
++P S+
Sbjct: 297 ISPISN 302
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 97 ATLDVSNNFF--QGHIPVEIGTYLP-GLMEFNLSRNAFNGSIPSSFADMQMLARLDISYN 153
A SNN +G EI T LP + E L +N P +F+ + L R+D+S N
Sbjct: 7 AACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN 66
Query: 154 QLTGEIPERMATGCFSLEILALSNNSL 180
Q++ P+ G SL L L N +
Sbjct: 67 QISELAPDAFQ-GLRSLNSLVLYGNKI 92
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 265 FLRILDLSNNTIFGTLPSCFSPAYIEQVH---LSKNKIEGRLESVIPDSPNLVTLDLSYN 321
+ +LDLS+N + L + ++P + +H LS N + PNL LDLS N
Sbjct: 40 YTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98
Query: 322 CLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372
LH L L LLL NN+I + ++Q + LS N +S
Sbjct: 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 67/166 (40%), Gaps = 30/166 (18%)
Query: 191 LTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNN 250
LTNL +L L N+ + E+ L L LS NH
Sbjct: 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH----------------------- 99
Query: 251 NLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSP-AYIEQVHLSKNKIEGRLESVIPD 309
L L F L+ L +L L NN I + F A +++++LS+N+I +I D
Sbjct: 100 -LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD 158
Query: 310 S---PNLVTLDLSYNCLHGSIPNRIDRLPQLSY--LLLANNYIEGE 350
P L+ LDLS N L + +LP L L NN +E +
Sbjct: 159 GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 470 IDLSCNKLTG----EIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 525
+DLS N L+ PT+ LT +H+L LSHN+L F + + LDLS N L
Sbjct: 44 LDLSHNNLSRLRAEWTPTR---LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100
Query: 526 H 526
H
Sbjct: 101 H 101
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 95/246 (38%), Gaps = 68/246 (27%)
Query: 215 CRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIE--------------- 259
L + S+N L+ P L NL+ LVDI+M NN + + P+
Sbjct: 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 124
Query: 260 -----FCQLRFLRILDLSNNTI----------------FGTLPSCFSP----AYIEQVHL 294
L L L+LS+NTI FG + P +E++ +
Sbjct: 125 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI 184
Query: 295 SKNKIEG--------RLESVIPD-------SPNLVTLDLSYNCLHGSIPNRIDRLPQLSY 339
S NK+ LES+I +P + +L L+G+ I L L+
Sbjct: 185 SSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTN 244
Query: 340 LL---LANNYIEGEIPVQ-LCQLKEVQLIDLSHNNLSGHIP----PCLVNTSLSEGHDEP 391
L LANN I P+ L +L E++ L N +S P L N L+E E
Sbjct: 245 LTDLDLANNQISNLAPLSGLTKLTELK---LGANQISNISPLAGLTALTNLELNENQLED 301
Query: 392 VAPTSS 397
++P S+
Sbjct: 302 ISPISN 307
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 95/246 (38%), Gaps = 68/246 (27%)
Query: 215 CRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIE--------------- 259
L + S+N L+ P L NL+ LVDI+M NN + + P+
Sbjct: 66 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 123
Query: 260 -----FCQLRFLRILDLSNNTI----------------FGTLPSCFSP----AYIEQVHL 294
L L L+LS+NTI FG + P +E++ +
Sbjct: 124 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI 183
Query: 295 SKNKIEG--------RLESVIPD-------SPNLVTLDLSYNCLHGSIPNRIDRLPQLSY 339
S NK+ LES+I +P + +L L+G+ I L L+
Sbjct: 184 SSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTN 243
Query: 340 LL---LANNYIEGEIPVQ-LCQLKEVQLIDLSHNNLSGHIP----PCLVNTSLSEGHDEP 391
L LANN I P+ L +L E++ L N +S P L N L+E E
Sbjct: 244 LTDLDLANNQISNLAPLSGLTKLTELK---LGANQISNISPLAGLTALTNLELNENQLED 300
Query: 392 VAPTSS 397
++P S+
Sbjct: 301 ISPISN 306
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 169 SLEILALSNNSLQG-HIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNH 227
LE L L NN + + S+ LT L TL L+ N +P L++ +L LYLS NH
Sbjct: 133 QLESLYLGNNKITDITVLSR---LTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSKNH 187
Query: 228 LSG-EIPRWLGNLSFL 242
+S R L NL L
Sbjct: 188 ISDLRALRGLKNLDVL 203
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 469 GIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK 528
+DLS N++T + + + AL L+ N + +FS+L +E LDLSYN L
Sbjct: 56 SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115
Query: 529 IPSQLTVLTTLA 540
S L++L
Sbjct: 116 SSSWFKPLSSLT 127
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 11/131 (8%)
Query: 102 SNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSF--ADMQMLARLDISYNQLTGEI 159
+++ FQG + L L L RN + +M L LD+S N L
Sbjct: 366 TDSVFQG------CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA 419
Query: 160 PERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLG 219
+R S+ +L LS+N L G +F ++ L NN IP+ ++ + L
Sbjct: 420 YDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLH---NNRIMSIPKDVTHLQALQ 476
Query: 220 GLYLSDNHLSG 230
L ++ N L
Sbjct: 477 ELNVASNQLKS 487
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 22/104 (21%)
Query: 96 LATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNG---------------------S 134
L TLDVS N H + ++ NLS N G S
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMS 464
Query: 135 IPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNN 178
IP +Q L L+++ NQL +P+ + SL+ + L +N
Sbjct: 465 IPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDN 507
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 435 VGSRTPPMGK-EETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHA 493
VGS TP + E + ++ +N+++ + + + LS N ++ I +L+++
Sbjct: 22 VGSMTPFSNELESMVDYSNRNLTHVPKD-LPPRTKALSLSQNSISELRMPDISFLSELRV 80
Query: 494 LNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG 527
L LSHN + F + +E LD+S+N L
Sbjct: 81 LRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN 114
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 435 VGSRTPPMGKEETIQFTTKNMSYYYQGRILT---SMFGIDLSCNKLTGEIPTQIGYLTKI 491
V T M ET+ + +++ + R S+ ++LS N LTG + + K+
Sbjct: 395 VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKV 452
Query: 492 HALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 525
L+L HNN +IP ++L+ ++ L+++ N L
Sbjct: 453 KVLDL-HNNRIMSIPKDVTHLQALQELNVASNQL 485
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 469 GIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK 528
+DLS N++T + + + AL L+ N + +FS+L +E LDLSYN L
Sbjct: 30 SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 89
Query: 529 IPSQLTVLTTLA 540
S L++L
Sbjct: 90 SSSWFKPLSSLT 101
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 266 LRILDLSNNTIFGTLPSCFSP-AYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLH 324
++ DLS + IF L S FS +EQ+ L++N+I ++ +L L L N L
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLK 336
Query: 325 GSIPNRI-DRLPQLSYLLLANNYIEGEIP 352
S+P+ I DRL L + L N + P
Sbjct: 337 -SVPDGIFDRLTSLQKIWLHTNPWDCSCP 364
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 58/132 (43%), Gaps = 8/132 (6%)
Query: 218 LGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIF 277
LGG L D E L NL++L I+ N L+ L F +L L+ L L N +
Sbjct: 70 LGGNKLHDISALKE----LTNLTYL---ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ 122
Query: 278 GTLPSCFSP-AYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQ 336
F + ++L+ N+++ + V NL LDLSYN L D+L Q
Sbjct: 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQ 182
Query: 337 LSYLLLANNYIE 348
L L L N ++
Sbjct: 183 LKDLRLYQNQLK 194
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 24/56 (42%)
Query: 488 LTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVFR 543
LT + LNL+HN L F L + LDLSYN L LT L R
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 73/182 (40%), Gaps = 29/182 (15%)
Query: 173 LALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEI 232
LAL N L H S LTNL L L GN +P +
Sbjct: 68 LALGGNKL--HDISALKELTNLTYLILTGNQLQS-LPNGV-------------------- 104
Query: 233 PRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSP-AYIEQ 291
L+ L ++++ N L+ L F +L L L+L++N + F + +
Sbjct: 105 ---FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTE 161
Query: 292 VHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRI-DRLPQLSYLLLANNYIEGE 350
+ LS N+++ E V L L L N L S+P+ + DRL L Y+ L +N +
Sbjct: 162 LDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT 220
Query: 351 IP 352
P
Sbjct: 221 CP 222
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 7/103 (6%)
Query: 110 IPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFS 169
+P + L L NL+ N F + L LD+SYNQL +PE +
Sbjct: 124 LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQ 182
Query: 170 LEILALSNNSLQG---HIFSKKFSLTNLMTLQLDGNNFSGEIP 209
L+ L L N L+ +F + LT+L + L N + P
Sbjct: 183 LKDLRLYQNQLKSVPDGVFDR---LTSLQYIWLHDNPWDCTCP 222
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 170 LEILALSNNSLQG-HIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHL 228
LE L L NN + + S+ LT L TL L+ N S +P L+ +L LYLS NH+
Sbjct: 133 LESLYLGNNKITDITVLSR---LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187
Query: 229 S 229
S
Sbjct: 188 S 188
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 170 LEILALSNNSLQG-HIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHL 228
LE L L NN + + S+ LT L TL L+ N S +P L+ +L LYLS NH+
Sbjct: 136 LESLYLGNNKITDITVLSR---LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190
Query: 229 S 229
S
Sbjct: 191 S 191
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 485 IGYLTKIHALNLSHNNL-TGTIPTTFSNLKQIESLDLSYNLLH 526
IG L + LN++HN + + +P FSNL + +DLSYN +
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 485 IGYLTKIHALNLSHNNL-TGTIPTTFSNLKQIESLDLSYNLLH 526
IG L + LN++HN + + +P FSNL + +DLSYN +
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 161
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 3/150 (2%)
Query: 130 AFNGSI--PSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSK 187
+FNG I S+F ++ L LD ++ L + +L L +S+ +
Sbjct: 86 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145
Query: 188 KFSLTNLMTLQLDGNNFSGE-IPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDII 246
L++L L++ GN+F +P+ ++ R L L LS L P +LS L +
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205
Query: 247 MPNNNLEGLIPIEFCQLRFLRILDLSNNTI 276
M +NN L + L L++LD S N I
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
+DLS +L PT L+ + LN+SHNN + L ++ LD S N
Sbjct: 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 170 LEILALSNNSLQG-HIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHL 228
LE L L NN + + S+ LT L TL L+ N S +P L+ +L LYLS NH+
Sbjct: 134 LESLYLGNNKITDITVLSR---LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 188
Query: 229 S 229
S
Sbjct: 189 S 189
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 170 LEILALSNNSLQG-HIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHL 228
LE L L NN + + S+ LT L TL L+ N S +P L+ +L LYLS NH+
Sbjct: 156 LESLYLGNNKITDITVLSR---LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 210
Query: 229 S 229
S
Sbjct: 211 S 211
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 170 LEILALSNNSLQG-HIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHL 228
LE L L NN + + S+ LT L TL L+ N S +P L+ +L LYLS NH+
Sbjct: 136 LESLYLGNNKITDITVLSR---LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190
Query: 229 S 229
S
Sbjct: 191 S 191
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 68/175 (38%), Gaps = 29/175 (16%)
Query: 173 LALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEI 232
LAL N L H S LTNL L L GN K L L L +N L
Sbjct: 68 LALGGNKL--HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP 125
Query: 233 PRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSP-AYIEQ 291
L+ L + + +N L+ L F +L L LDL NN + F ++Q
Sbjct: 126 DGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQ 185
Query: 292 VHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRI-DRLPQLSYLLLANN 345
+ L+ N+++ S+P+ + DRL L+++ L NN
Sbjct: 186 LSLNDNQLK-------------------------SVPDGVFDRLTSLTHIWLLNN 215
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 472 LSC--NKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNL-KQIESLDLSYNLLH 526
L C N+L G++P G K+ +LNL++N +T IP F +Q+E+L ++N L
Sbjct: 335 LECLYNQLEGKLPA-FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK 390
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 16/112 (14%)
Query: 129 NAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQ--GHIFS 186
N G +P+ F LA L+++YNQ+T EIP +E L+ ++N L+ +IF
Sbjct: 340 NQLEGKLPA-FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFD 397
Query: 187 KK---------FSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLS 229
K FS + + +DG NF P K + + LS+N +S
Sbjct: 398 AKSVSVXSAIDFSYNEIGS--VDGKNFDPLDPTPF-KGINVSSINLSNNQIS 446
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 170 LEILALSNNSLQG-HIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHL 228
LE L L NN + + S+ LT L TL L+ N S +P L+ +L LYLS NH+
Sbjct: 131 LESLYLGNNKITDITVLSR---LTKLDTLSLEDNQISDIVP--LACLTKLQNLYLSKNHI 185
Query: 229 S 229
S
Sbjct: 186 S 186
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 170 LEILALSNNSLQG-HIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHL 228
LE L L NN + + S+ LT L TL L+ N S +P L+ +L LYLS NH+
Sbjct: 131 LESLYLGNNKITDITVLSR---LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 185
Query: 229 S 229
S
Sbjct: 186 S 186
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 170 LEILALSNNSLQG-HIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHL 228
LE L L NN + + S+ LT L TL L+ N S +P L+ +L LYLS NH+
Sbjct: 154 LESLYLGNNKITDITVLSR---LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 208
Query: 229 S 229
S
Sbjct: 209 S 209
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 170 LEILALSNNSLQG-HIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHL 228
LE L L NN + + S+ LT L TL L+ N S +P L+ +L LYLS NH+
Sbjct: 154 LESLYLGNNKITDITVLSR---LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 208
Query: 229 S 229
S
Sbjct: 209 S 209
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 170 LEILALSNNSLQG-HIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHL 228
LE L L NN + + S+ LT L TL L+ N S +P L+ +L LYLS NH+
Sbjct: 154 LESLYLGNNKITDITVLSR---LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 208
Query: 229 S 229
S
Sbjct: 209 S 209
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 24/133 (18%)
Query: 118 LPGLMEFNLSRNAF----------NGS----IPSSFADMQMLARLDISYNQLTGEIPERM 163
L L FN+S N F NG+ +P+ ++ L LD+S+N+LT +P +
Sbjct: 231 LSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAEL 289
Query: 164 ATGCFSLEILALSNNSLQGHIFSKKF-SLTNLMTLQLDGNNFSGEIPESLSKCRRLGGL- 221
+ CF L+ +N + +F +L NL L ++GN + + L++ + + GL
Sbjct: 290 GS-CFQLKYFYFFDNMVT--TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE-KSVTGLI 345
Query: 222 -YLSDNHLSGEIP 233
YL DN EIP
Sbjct: 346 FYLRDNR--PEIP 356
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 96 LATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQL 155
L LDVS N +P+ L L E L N P L +L ++ NQL
Sbjct: 102 LTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Query: 156 TGEIPERMATGCFSLEILALSNNSL 180
T E+P + G +L+ L L NSL
Sbjct: 161 T-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 96 LATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQL 155
L LDVS N +P+ L L E L N P L +L ++ NQL
Sbjct: 102 LTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Query: 156 TGEIPERMATGCFSLEILALSNNSL 180
T E+P + G +L+ L L NSL
Sbjct: 161 T-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 96 LATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQL 155
L LDVS N +P+ L L E L N P L +L ++ NQL
Sbjct: 102 LTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Query: 156 TGEIPERMATGCFSLEILALSNNSL 180
T E+P + G +L+ L L NSL
Sbjct: 161 T-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 96 LATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQL 155
L LDVS N +P+ L L E L N P L +L ++ NQL
Sbjct: 102 LTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Query: 156 TGEIPERMATGCFSLEILALSNNSL 180
T E+P + G +L+ L L NSL
Sbjct: 161 T-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 59/152 (38%), Gaps = 2/152 (1%)
Query: 87 RMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLA 146
++P H Q A L ++NN F I LP L + N S N +F +
Sbjct: 25 KIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVN 84
Query: 147 RLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSG 206
+ ++ N+L + +M G SL+ L L +N + L+++ L L N +
Sbjct: 85 EILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT 143
Query: 207 EIPESLSKCRRLGGLYLSDNHLSGEI-PRWLG 237
P + L L L N + WLG
Sbjct: 144 VAPGAFDTLHSLSTLNLLANPFNCNCYLAWLG 175
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 484 QIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 530
Q+ L + LNLS+N G F Q+E LD+++ LH K P
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAP 416
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 112/267 (41%), Gaps = 30/267 (11%)
Query: 121 LMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSL 180
L + L+ N+F+ + A L L I N ++ R +L+ L LS++ +
Sbjct: 302 LKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDI 361
Query: 181 QGHIFSKKFSLTNLMTLQ---LDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRW-L 236
+ L NL LQ L N G ++ +C +L L ++ HL + P
Sbjct: 362 EASDCCN-LQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPF 420
Query: 237 GNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSK 296
NL L + + + L+ L+ LR L+L N+ F I + +L +
Sbjct: 421 QNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNS--------FQDGSISKTNLLQ 472
Query: 297 NKIEGRLESVIPDSPNLVT--------------LDLSYNCLHGSIPNRIDRLPQLSYLLL 342
+ G LE +I S NL++ LDLS+N L G + + L L YL +
Sbjct: 473 --MVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNM 529
Query: 343 ANNYIEGEIPVQLCQLKEVQLIDLSHN 369
A+N I P L L + +I+LSHN
Sbjct: 530 ASNNIRIIPPHLLPALSQQSIINLSHN 556
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
L + ++LS N+L P LT + L L H + F +LK +E L+LS+N
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 34/173 (19%)
Query: 215 CRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIE--------------- 259
L + S+N L+ P L NL+ LVDI+M NN + + P+
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 119
Query: 260 -----FCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLV 314
L L L+LS+NTI + + ++Q++ S N++ + NL
Sbjct: 120 TDIDPLKNLTNLNRLELSSNTI-SDISALSGLTSLQQLNFSSNQVTD-----LKPLANLT 173
Query: 315 T---LDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQ-LCQLKEVQL 363
T LD+S N + S + + +L L L+ NN I P+ L L E+ L
Sbjct: 174 TLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 224
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 16/138 (11%)
Query: 121 LMEFNLSRNAF-----NGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILAL 175
L + NL R +G++P +L LD+S+NQL +P + +L +L +
Sbjct: 57 LTQLNLDRAELTKLQVDGTLP-------VLGTLDLSHNQLQS-LP-LLGQTLPALTVLDV 107
Query: 176 SNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRW 235
S N L L L L L GN P L+ +L L L++N+L+ E+P
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAG 166
Query: 236 LGN-LSFLVDIIMPNNNL 252
L N L L +++ N+L
Sbjct: 167 LLNGLENLDTLLLQENSL 184
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Query: 112 VEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLE 171
+++ LP L +LS N S+P + L LD+S+N+LT +P G L+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQ 127
Query: 172 ILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPES-LSKCRRLGGLYLSDNHL 228
L L N L+ L L L NN + E+P L+ L L L +N L
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 9/149 (6%)
Query: 289 IEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRI-DRLPQLSYLLLANNYI 347
+ Q++L NK++ V +L L+LS N L S+PN + D+L QL L L N +
Sbjct: 54 LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQL 112
Query: 348 EG---EIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASG 404
+ + +L QLK+++L ++ + L + HD P T S
Sbjct: 113 QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSE 172
Query: 405 YASSYTKTALNAT---TPFSSSC-GRGYP 429
+ + ++ N+ P S+ C G G P
Sbjct: 173 WINKHSGVVRNSAGSVAPDSAKCSGSGKP 201
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 16/138 (11%)
Query: 121 LMEFNLSRNAF-----NGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILAL 175
L + NL R +G++P +L LD+S+NQL +P + +L +L +
Sbjct: 57 LTQLNLDRAELTKLQVDGTLP-------VLGTLDLSHNQLQS-LP-LLGQTLPALTVLDV 107
Query: 176 SNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRW 235
S N L L L L L GN P L+ +L L L++N+L+ E+P
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAG 166
Query: 236 LGN-LSFLVDIIMPNNNL 252
L N L L +++ N+L
Sbjct: 167 LLNGLENLDTLLLQENSL 184
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Query: 112 VEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLE 171
+++ LP L +LS N S+P + L LD+S+N+LT +P G L+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQ 127
Query: 172 ILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPES-LSKCRRLGGLYLSDNHL 228
L L N L+ L L L NN + E+P L+ L L L +N L
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 16/138 (11%)
Query: 121 LMEFNLSRNAF-----NGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILAL 175
L + NL R +G++P +L LD+S+NQL +P + +L +L +
Sbjct: 57 LTQLNLDRAELTKLQVDGTLP-------VLGTLDLSHNQLQS-LP-LLGQTLPALTVLDV 107
Query: 176 SNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRW 235
S N L L L L L GN P L+ +L L L++N+L+ E+P
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAG 166
Query: 236 LGN-LSFLVDIIMPNNNL 252
L N L L +++ N+L
Sbjct: 167 LLNGLENLDTLLLQENSL 184
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Query: 112 VEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLE 171
+++ LP L +LS N S+P + L LD+S+N+LT +P G L+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQ 127
Query: 172 ILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPES-LSKCRRLGGLYLSDNHL 228
L L N L+ L L L NN + E+P L+ L L L +N L
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 10/113 (8%)
Query: 126 LSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIF 185
L++ +G++P +L LD+S+NQL +P + +L +L +S N L
Sbjct: 68 LTKLQVDGTLP-------VLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPL 118
Query: 186 SKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGN 238
L L L L GN P L+ +L L L++N+L+ E+P L N
Sbjct: 119 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLN 170
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Query: 112 VEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLE 171
+++ LP L +LS N S+P + L LD+S+N+LT +P G L+
Sbjct: 71 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQ 128
Query: 172 ILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPES-LSKCRRLGGLYLSDNHL 228
L L N L+ L L L NN + E+P L+ L L L +N L
Sbjct: 129 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 185
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 10/113 (8%)
Query: 126 LSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIF 185
L++ +G++P +L LD+S+NQL +P + +L +L +S N L
Sbjct: 67 LTKLQVDGTLP-------VLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPL 117
Query: 186 SKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGN 238
L L L L GN P L+ +L L L++N+L+ E+P L N
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLN 169
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Query: 112 VEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLE 171
+++ LP L +LS N S+P + L LD+S+N+LT +P G L+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQ 127
Query: 172 ILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPES-LSKCRRLGGLYLSDNHL 228
L L N L+ L L L NN + E+P L+ L L L +N L
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 72/173 (41%), Gaps = 34/173 (19%)
Query: 215 CRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIE--------------- 259
L + S+N L+ P L NL+ LVDI+M NN + + P+
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 119
Query: 260 -----FCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLV 314
L L L+LS+NTI + + ++Q+ S N++ + NL
Sbjct: 120 TDIDPLKNLTNLNRLELSSNTI-SDISALSGLTSLQQLSFSSNQVTD-----LKPLANLT 173
Query: 315 T---LDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQ-LCQLKEVQL 363
T LD+S N + S + + +L L L+ NN I P+ L L E+ L
Sbjct: 174 TLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 224
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 29.3 bits (64), Expect = 5.8, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 271 LSNNTIFGTLPSCFSP-AYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPN 329
L+NN I P F ++Q++ + NK+ V L LDL+ N L
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRG 99
Query: 330 RIDRLPQLSYLLLANN 345
D L L+++ L NN
Sbjct: 100 AFDNLKSLTHIYLYNN 115
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
L + ++LS N+L P LT + L L H + F +LK +E L+LS+N
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 72/173 (41%), Gaps = 34/173 (19%)
Query: 215 CRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIE--------------- 259
L + S+N L+ P L NL+ LVDI+M NN + + P+
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 119
Query: 260 -----FCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLV 314
L L L+LS+NTI + + ++Q+ S N++ + NL
Sbjct: 120 TDIDPLKNLTNLNRLELSSNTI-SDISALSGLTSLQQLSFSSNQVTD-----LKPLANLT 173
Query: 315 T---LDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQ-LCQLKEVQL 363
T LD+S N + S + + +L L L+ NN I P+ L L E+ L
Sbjct: 174 TLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,861,154
Number of Sequences: 62578
Number of extensions: 641354
Number of successful extensions: 1916
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 1237
Number of HSP's gapped (non-prelim): 489
length of query: 543
length of database: 14,973,337
effective HSP length: 104
effective length of query: 439
effective length of database: 8,465,225
effective search space: 3716233775
effective search space used: 3716233775
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)