Query 040468
Match_columns 543
No_of_seqs 264 out of 4017
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 08:45:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040468.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040468hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.7E-48 8.1E-53 431.6 36.1 498 22-543 70-577 (968)
2 PLN00113 leucine-rich repeat r 100.0 4.1E-47 8.9E-52 423.3 34.1 491 18-532 90-590 (968)
3 KOG4194 Membrane glycoprotein 100.0 9.7E-37 2.1E-41 290.8 9.1 395 48-525 55-451 (873)
4 KOG4194 Membrane glycoprotein 100.0 9E-37 1.9E-41 291.1 5.4 385 72-542 54-444 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 1.8E-36 3.8E-41 276.9 -13.7 392 37-527 106-542 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 3.4E-35 7.4E-40 268.5 -8.9 429 13-542 37-533 (565)
7 KOG0444 Cytoskeletal regulator 100.0 5.8E-34 1.2E-38 274.0 -4.2 317 22-371 8-328 (1255)
8 KOG0444 Cytoskeletal regulator 100.0 6.7E-33 1.5E-37 266.7 -3.6 340 20-370 31-373 (1255)
9 KOG0618 Serine/threonine phosp 100.0 1.8E-31 3.9E-36 268.1 -6.3 453 25-543 2-458 (1081)
10 KOG0618 Serine/threonine phosp 99.9 1.5E-29 3.3E-34 254.3 -3.7 398 22-525 46-488 (1081)
11 PLN03210 Resistant to P. syrin 99.9 4.6E-24 1E-28 238.6 25.8 342 87-525 551-905 (1153)
12 KOG4237 Extracellular matrix p 99.9 1.1E-26 2.5E-31 212.6 -3.1 410 94-523 67-498 (498)
13 PLN03210 Resistant to P. syrin 99.9 2.6E-22 5.6E-27 224.6 25.6 341 15-372 552-906 (1153)
14 KOG4237 Extracellular matrix p 99.9 3.2E-25 6.9E-30 203.2 -1.8 277 70-348 67-359 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 4.5E-20 9.7E-25 192.1 16.7 63 466-533 403-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 2.7E-19 5.9E-24 186.3 18.0 267 119-511 201-467 (788)
17 PRK15370 E3 ubiquitin-protein 99.7 9E-18 2E-22 176.2 13.4 201 145-372 180-380 (754)
18 PRK15370 E3 ubiquitin-protein 99.7 6E-17 1.3E-21 170.0 14.6 247 168-526 178-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 5.6E-18 1.2E-22 165.3 3.3 162 287-525 137-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1E-17 2.2E-22 163.5 1.6 272 75-371 3-319 (319)
21 KOG0617 Ras suppressor protein 99.6 2.2E-17 4.8E-22 134.8 -3.7 169 280-536 26-195 (264)
22 KOG0617 Ras suppressor protein 99.5 5E-16 1.1E-20 126.9 -3.4 180 260-526 29-212 (264)
23 KOG1259 Nischarin, modulator o 99.2 3.5E-12 7.5E-17 114.0 1.7 227 212-528 178-414 (490)
24 KOG1909 Ran GTPase-activating 99.2 1.7E-12 3.7E-17 118.6 -1.0 250 188-525 26-310 (382)
25 KOG4658 Apoptotic ATPase [Sign 99.1 7.9E-11 1.7E-15 126.3 8.5 129 22-154 524-653 (889)
26 KOG3207 Beta-tubulin folding c 99.1 1.6E-11 3.5E-16 115.4 2.0 160 22-181 122-284 (505)
27 KOG1909 Ran GTPase-activating 99.1 7.5E-12 1.6E-16 114.4 -0.3 133 239-371 156-310 (382)
28 KOG3207 Beta-tubulin folding c 99.1 3.2E-11 7E-16 113.4 1.4 211 67-277 118-339 (505)
29 PF14580 LRR_9: Leucine-rich r 99.0 4.3E-10 9.3E-15 96.6 6.7 127 92-223 17-147 (175)
30 PF14580 LRR_9: Leucine-rich r 99.0 3.8E-10 8.2E-15 97.0 6.3 128 43-175 17-147 (175)
31 PF13855 LRR_8: Leucine rich r 99.0 2.9E-10 6.4E-15 80.2 3.9 61 465-525 1-61 (61)
32 KOG0532 Leucine-rich repeat (L 99.0 2.9E-11 6.2E-16 117.3 -2.7 180 44-236 74-253 (722)
33 COG4886 Leucine-rich repeat (L 99.0 5.9E-10 1.3E-14 111.9 6.5 104 264-370 116-220 (394)
34 PLN03150 hypothetical protein; 99.0 1.9E-09 4.1E-14 113.4 9.1 114 336-531 419-533 (623)
35 KOG4658 Apoptotic ATPase [Sign 98.9 6.6E-10 1.4E-14 119.3 4.6 132 42-179 520-653 (889)
36 COG4886 Leucine-rich repeat (L 98.9 2.4E-09 5.2E-14 107.5 7.8 174 119-300 116-290 (394)
37 KOG1259 Nischarin, modulator o 98.9 3E-10 6.5E-15 101.8 0.8 129 239-372 283-412 (490)
38 PLN03150 hypothetical protein; 98.9 8.3E-09 1.8E-13 108.6 11.0 107 23-130 420-526 (623)
39 KOG0532 Leucine-rich repeat (L 98.9 1.4E-10 2.9E-15 112.8 -2.4 170 97-277 78-247 (722)
40 KOG2120 SCF ubiquitin ligase, 98.8 1.7E-10 3.6E-15 103.3 -4.8 180 22-202 186-373 (419)
41 PF13855 LRR_8: Leucine rich r 98.8 8.2E-09 1.8E-13 72.8 4.1 61 311-371 1-61 (61)
42 KOG2120 SCF ubiquitin ligase, 98.7 6E-10 1.3E-14 99.8 -4.9 182 71-253 186-376 (419)
43 KOG4341 F-box protein containi 98.6 1.8E-09 3.8E-14 101.4 -4.6 278 22-322 139-437 (483)
44 KOG0531 Protein phosphatase 1, 98.6 8E-09 1.7E-13 103.9 -1.2 197 167-374 117-320 (414)
45 KOG0531 Protein phosphatase 1, 98.5 8E-09 1.7E-13 103.9 -2.1 65 464-530 254-322 (414)
46 KOG1859 Leucine-rich repeat pr 98.5 3.4E-09 7.4E-14 106.0 -6.6 129 311-527 164-293 (1096)
47 COG5238 RNA1 Ran GTPase-activa 98.4 5.6E-08 1.2E-12 86.3 -0.4 86 143-229 157-255 (388)
48 KOG1859 Leucine-rich repeat pr 98.3 1.7E-08 3.6E-13 101.3 -6.0 128 46-181 165-292 (1096)
49 KOG4341 F-box protein containi 98.3 3E-08 6.4E-13 93.3 -4.2 133 239-371 293-438 (483)
50 KOG3665 ZYG-1-like serine/thre 98.3 2.8E-07 6E-12 96.9 1.6 84 43-129 146-230 (699)
51 KOG2982 Uncharacterized conser 98.2 2.1E-07 4.7E-12 83.8 0.1 82 286-367 198-287 (418)
52 PF12799 LRR_4: Leucine Rich r 98.2 1.2E-06 2.5E-11 56.4 2.7 36 466-502 2-37 (44)
53 PF12799 LRR_4: Leucine Rich r 98.1 2.7E-06 5.8E-11 54.7 3.0 38 489-527 1-38 (44)
54 KOG3665 ZYG-1-like serine/thre 98.0 4.2E-06 9E-11 88.2 4.1 83 93-178 147-230 (699)
55 KOG2982 Uncharacterized conser 98.0 2.1E-06 4.6E-11 77.5 1.0 212 143-374 45-264 (418)
56 KOG4579 Leucine-rich repeat (L 97.9 1.2E-06 2.6E-11 69.8 -1.6 83 71-156 54-136 (177)
57 COG5238 RNA1 Ran GTPase-activa 97.9 5E-06 1.1E-10 74.2 1.5 39 167-205 91-133 (388)
58 PRK15386 type III secretion pr 97.9 5E-05 1.1E-09 73.8 8.4 34 464-500 155-188 (426)
59 KOG4579 Leucine-rich repeat (L 97.8 1.2E-06 2.7E-11 69.8 -2.6 107 22-132 28-136 (177)
60 KOG1644 U2-associated snRNP A' 97.7 6.6E-05 1.4E-09 64.3 5.7 83 119-204 42-125 (233)
61 PF13306 LRR_5: Leucine rich r 97.7 0.00012 2.7E-09 60.5 6.5 84 65-152 7-90 (129)
62 KOG1644 U2-associated snRNP A' 97.7 6.4E-05 1.4E-09 64.4 4.7 86 442-527 41-127 (233)
63 PF13306 LRR_5: Leucine rich r 97.5 0.00056 1.2E-08 56.4 8.6 122 235-362 7-129 (129)
64 PRK15386 type III secretion pr 97.5 0.00083 1.8E-08 65.5 10.5 135 42-202 49-187 (426)
65 KOG1947 Leucine rich repeat pr 97.4 1.8E-05 3.8E-10 82.0 -2.3 191 42-242 185-389 (482)
66 KOG1947 Leucine rich repeat pr 97.4 1.9E-05 4.1E-10 81.8 -2.6 236 93-348 187-440 (482)
67 KOG2739 Leucine-rich acidic nu 97.1 0.00022 4.7E-09 63.9 1.5 103 70-175 43-150 (260)
68 KOG2739 Leucine-rich acidic nu 97.0 0.00036 7.9E-09 62.5 2.1 127 22-152 19-152 (260)
69 KOG2123 Uncharacterized conser 96.7 8.3E-05 1.8E-09 66.9 -4.0 100 45-149 19-123 (388)
70 KOG2123 Uncharacterized conser 96.5 0.00021 4.6E-09 64.3 -3.3 100 94-198 19-123 (388)
71 PF00560 LRR_1: Leucine Rich R 95.9 0.0042 9.2E-08 33.0 1.2 19 467-486 2-20 (22)
72 PF00560 LRR_1: Leucine Rich R 95.7 0.0043 9.4E-08 33.0 0.8 20 490-510 1-20 (22)
73 PF13504 LRR_7: Leucine rich r 94.4 0.023 5.1E-07 27.9 1.1 13 466-478 2-14 (17)
74 KOG0473 Leucine-rich repeat pr 93.9 0.0038 8.3E-08 55.0 -3.7 76 464-542 41-116 (326)
75 PF13504 LRR_7: Leucine rich r 93.9 0.032 6.9E-07 27.4 1.0 13 490-502 2-14 (17)
76 KOG4308 LRR-containing protein 93.8 0.00022 4.8E-09 72.1 -13.6 61 467-527 235-304 (478)
77 KOG3864 Uncharacterized conser 93.5 0.0078 1.7E-07 52.0 -2.6 83 22-104 102-186 (221)
78 KOG4308 LRR-containing protein 93.3 0.00087 1.9E-08 67.8 -10.3 89 142-230 203-304 (478)
79 KOG3864 Uncharacterized conser 92.8 0.016 3.4E-07 50.2 -1.7 84 287-370 101-187 (221)
80 PF13516 LRR_6: Leucine Rich r 92.1 0.044 9.5E-07 29.8 0.0 13 490-502 3-15 (24)
81 PF13516 LRR_6: Leucine Rich r 91.1 0.066 1.4E-06 29.0 0.0 22 464-485 1-22 (24)
82 smart00369 LRR_TYP Leucine-ric 89.7 0.23 5.1E-06 27.4 1.6 13 490-502 3-15 (26)
83 smart00370 LRR Leucine-rich re 89.7 0.23 5.1E-06 27.4 1.6 13 490-502 3-15 (26)
84 smart00370 LRR Leucine-rich re 89.3 0.28 6E-06 27.1 1.6 22 512-533 1-22 (26)
85 smart00369 LRR_TYP Leucine-ric 89.3 0.28 6E-06 27.1 1.6 22 512-533 1-22 (26)
86 smart00364 LRR_BAC Leucine-ric 77.1 1.6 3.4E-05 24.1 1.2 13 466-478 3-15 (26)
87 KOG0473 Leucine-rich repeat pr 75.7 0.15 3.3E-06 45.3 -4.6 61 464-526 64-124 (326)
88 smart00365 LRR_SD22 Leucine-ri 75.6 2.4 5.1E-05 23.5 1.7 15 512-526 1-15 (26)
89 smart00368 LRR_RI Leucine rich 73.9 1.4 3.1E-05 24.8 0.6 12 491-502 4-15 (28)
90 KOG4242 Predicted myosin-I-bin 70.2 20 0.00043 35.9 7.6 38 310-347 439-480 (553)
91 smart00367 LRR_CC Leucine-rich 57.2 7.5 0.00016 21.3 1.4 15 512-526 1-16 (26)
92 KOG3763 mRNA export factor TAP 50.6 8.5 0.00018 39.2 1.4 65 67-132 215-283 (585)
93 KOG3763 mRNA export factor TAP 41.2 16 0.00035 37.3 1.8 37 93-129 217-254 (585)
94 TIGR00864 PCC polycystin catio 21.0 51 0.0011 40.9 1.6 33 471-503 1-33 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.7e-48 Score=431.60 Aligned_cols=498 Identities=32% Similarity=0.452 Sum_probs=367.2
Q ss_pred ceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEc
Q 040468 22 QLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDV 101 (543)
Q Consensus 22 ~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l 101 (543)
+++.|+|+++.+.+..+..+..+++|++|++++|.+.+.+|..++..+.+|++|++++|++.+..|. ..+++|++|++
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~L 147 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDL 147 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEEC
Confidence 7999999999999888888889999999999999998888988877889999999999988776663 46788899999
Q ss_pred CCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCC
Q 040468 102 SNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQ 181 (543)
Q Consensus 102 s~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 181 (543)
++|.+.+.+|..+.. +++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+. .+++|++|++++|.+.
T Consensus 148 s~n~~~~~~p~~~~~-l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 148 SNNMLSGEIPNDIGS-FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG-QMKSLKWIYLGYNNLS 225 (968)
T ss_pred cCCcccccCChHHhc-CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHc-CcCCccEEECcCCccC
Confidence 888887777777766 88889999988888777888888888888888888888766776554 4888888888888888
Q ss_pred CcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCccccc
Q 040468 182 GHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFC 261 (543)
Q Consensus 182 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~ 261 (543)
+..+..+..+++|+.|++.+|.+.+..|..+..+++|+.|++++|.+....|..+..+++|+.|++++|.+.+..|..+.
T Consensus 226 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 305 (968)
T PLN00113 226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305 (968)
T ss_pred CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc
Confidence 77777888888888888888888777788888888888888888888777777788888888888888888877787788
Q ss_pred CCCCCcEEEccCCcCccCCCCCC-CcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEE
Q 040468 262 QLRFLRILDLSNNTIFGTLPSCF-SPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYL 340 (543)
Q Consensus 262 ~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L 340 (543)
.+++|+.|++++|.+.+..+..+ .+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..|.++..+++|+.|
T Consensus 306 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L 385 (968)
T PLN00113 306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKL 385 (968)
T ss_pred CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEE
Confidence 88888888888888776655443 37788888888888877777777778888888888888877777777777888888
Q ss_pred EccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCC----CCC---CCCCCCCCCCCCCccccccccc
Q 040468 341 LLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGH----DEP---VAPTSSSCGRASGYASSYTKTA 413 (543)
Q Consensus 341 ~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~c~~~~~~~~~~~~~~ 413 (543)
++.+|++.+..|..+..+++|+.|++++|++.+..|..+..++..... +.. .......++.+.......+...
T Consensus 386 ~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~ 465 (968)
T PLN00113 386 ILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFF 465 (968)
T ss_pred ECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceee
Confidence 888888877777777788888888888888877777666554432210 000 0001112222222222222110
Q ss_pred cCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCccccc--ccccCceeEEEcccCccccccChhhhccccc
Q 040468 414 LNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQ--GRILTSMFGIDLSCNKLTGEIPTQIGYLTKI 491 (543)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L 491 (543)
..... ......++.+.+....+..... ...+++|++|++++|.+++..|..+..+++|
T Consensus 466 ~~~p~--------------------~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 525 (968)
T PLN00113 466 GGLPD--------------------SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKL 525 (968)
T ss_pred eecCc--------------------ccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCC
Confidence 00000 0001122223322222221111 1125677788888888777777777778888
Q ss_pred CeeeCcCCccccccChhhhccCCCCeeeCCCCcCcccCCccccccCcCCcCC
Q 040468 492 HALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVFR 543 (543)
Q Consensus 492 ~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~ 543 (543)
++|+|++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|++|+
T Consensus 526 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ 577 (968)
T PLN00113 526 VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVN 577 (968)
T ss_pred CEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEe
Confidence 8888888888877787788888888888888888777777777777777653
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.1e-47 Score=423.28 Aligned_cols=491 Identities=31% Similarity=0.434 Sum_probs=398.6
Q ss_pred CCCCceeEEEeeCCCCCCCcchhcc-CCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCC
Q 040468 18 TPKFQLTSISLSGYIDGGTFPKFLY-HQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKL 96 (543)
Q Consensus 18 ~~~~~L~~L~L~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L 96 (543)
....+|+.|+|++|.+.+.+|..+. .+++|++|++++|.+++.+|. ..+++|++|++++|.+.+..|..+..+++|
T Consensus 90 ~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 166 (968)
T PLN00113 90 FRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSL 166 (968)
T ss_pred hCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCC
Confidence 3455899999999999988887765 899999999999999888885 458899999999999988889999999999
Q ss_pred CEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEcc
Q 040468 97 ATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALS 176 (543)
Q Consensus 97 ~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~ 176 (543)
++|++++|.+.+.+|..+.. +++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+. .+++|++|+++
T Consensus 167 ~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~ 244 (968)
T PLN00113 167 KVLDLGGNVLVGKIPNSLTN-LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG-GLTSLNHLDLV 244 (968)
T ss_pred CEEECccCcccccCChhhhh-CcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh-cCCCCCEEECc
Confidence 99999999988788888877 89999999999999888999999999999999999999877887665 49999999999
Q ss_pred CCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccC
Q 040468 177 NNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLI 256 (543)
Q Consensus 177 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 256 (543)
+|.+.+..+..+..+++|+.|++.+|.+.+..|..+..+++|+.|++++|.+....|..+..+++|+.|++++|.+.+..
T Consensus 245 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 324 (968)
T PLN00113 245 YNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI 324 (968)
T ss_pred CceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcC
Confidence 99998888888999999999999999998888888999999999999999998888888999999999999999998888
Q ss_pred cccccCCCCCcEEEccCCcCccCCCCCC-CcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCC
Q 040468 257 PIEFCQLRFLRILDLSNNTIFGTLPSCF-SPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLP 335 (543)
Q Consensus 257 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~ 335 (543)
|..+..+++|+.|++++|.+.+..+..+ ..++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..++
T Consensus 325 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 404 (968)
T PLN00113 325 PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACR 404 (968)
T ss_pred ChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCC
Confidence 8889999999999999999887666544 378899999999999887777777888999999999999888888888999
Q ss_pred CCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCC------CCCCCCCCCCCCCCCCCccccc
Q 040468 336 QLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEG------HDEPVAPTSSSCGRASGYASSY 409 (543)
Q Consensus 336 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~c~~~~~~~~~~ 409 (543)
+|+.|++++|++++..|..+..+++|+.|++++|.+.+.+|..++.++.... ......+.......+.......
T Consensus 405 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~ 484 (968)
T PLN00113 405 SLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSR 484 (968)
T ss_pred CCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcC
Confidence 9999999999998888888889999999999999988877765554442221 1111111111111111111111
Q ss_pred cccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccc--cccCceeEEEcccCccccccChhhhc
Q 040468 410 TKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQG--RILTSMFGIDLSCNKLTGEIPTQIGY 487 (543)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~ls~n~l~~~~~~~l~~ 487 (543)
+.- .+ ..+........+..+.+..+.+....+. ..+++|++|+|++|.+++..|..+..
T Consensus 485 n~l------------~~-------~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 545 (968)
T PLN00113 485 NQF------------SG-------AVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSE 545 (968)
T ss_pred Ccc------------CC-------ccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhC
Confidence 110 00 0001111122233333333333222211 22789999999999999999999999
Q ss_pred ccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcccCCcc
Q 040468 488 LTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQ 532 (543)
Q Consensus 488 l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 532 (543)
+++|++|+|++|++.+.+|..+..+++|+.|++++|++.+.+|..
T Consensus 546 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 546 MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred cccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence 999999999999999999999999999999999999999988864
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=9.7e-37 Score=290.81 Aligned_cols=395 Identities=23% Similarity=0.223 Sum_probs=276.2
Q ss_pred CEEeccCCcccccCChhhhh-cCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEc
Q 040468 48 KNANLSHLNLSGEFPNWLVE-NNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNL 126 (543)
Q Consensus 48 ~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L 126 (543)
+.|+.++..+....-..+.+ -...-+.|++++|++....+..|.++++|+.+.+.+|.++ .+|..... ..+|+.|+|
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~-sghl~~L~L 132 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE-SGHLEKLDL 132 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc-ccceeEEee
Confidence 44666666553211111101 1234566888888887777777788888888888888877 77766655 567888888
Q ss_pred CCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCc
Q 040468 127 SRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSG 206 (543)
Q Consensus 127 ~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 206 (543)
.+|.|++.-.+.+..++.|+.|||+.|.+. .++..-+..-.++++|+|++|+|+......|..+.+|..|.++.|.++.
T Consensus 133 ~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt 211 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT 211 (873)
T ss_pred eccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc
Confidence 888887766777777888888888888877 7776666555678888888888877777777777788888888888775
Q ss_pred cCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCC-CCC
Q 040468 207 EIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPS-CFS 285 (543)
Q Consensus 207 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~ 285 (543)
.-+..|..+++|+.|++..|.+...---.|+++++|+.+.+..|.+...-...|..+.+++.|++..|.+...-.. .+.
T Consensus 212 Lp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg 291 (873)
T KOG4194|consen 212 LPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG 291 (873)
T ss_pred cCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc
Confidence 5556677778888888887777643344567777777777777777766556677777777888877777655443 344
Q ss_pred cccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEe
Q 040468 286 PAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLID 365 (543)
Q Consensus 286 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 365 (543)
+.+|+.|+++.|.|.......++.+++|++|+++.|+++...+..|..+..|+.|+|+.|.+...-...|..+++|++||
T Consensus 292 Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~Ld 371 (873)
T KOG4194|consen 292 LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLD 371 (873)
T ss_pred cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhc
Confidence 77777777777777777666677777777788877777766667777777777777777777755556677777777777
Q ss_pred CCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCc
Q 040468 366 LSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKE 445 (543)
Q Consensus 366 l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (543)
++.|.++..+.+.-..+
T Consensus 372 Lr~N~ls~~IEDaa~~f--------------------------------------------------------------- 388 (873)
T KOG4194|consen 372 LRSNELSWCIEDAAVAF--------------------------------------------------------------- 388 (873)
T ss_pred CcCCeEEEEEecchhhh---------------------------------------------------------------
Confidence 77777764333211000
Q ss_pred cceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcC
Q 040468 446 ETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 525 (543)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i 525 (543)
.+ +++|+.|+|.+|++....-..|..+++|++|||.+|.|..+.|++|..+ +|+.|.+..-.+
T Consensus 389 --------------~g--l~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 389 --------------NG--LPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred --------------cc--chhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence 00 5677777777777773333567777777777777777777777777776 777777665544
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=9e-37 Score=291.06 Aligned_cols=385 Identities=24% Similarity=0.264 Sum_probs=302.5
Q ss_pred CcEEEccCCcccccCCCCCcCC--CCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEe
Q 040468 72 LETLLLANNSLFGSFRMPIHSH--QKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLD 149 (543)
Q Consensus 72 L~~L~L~~~~~~~~~~~~~~~~--~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~ 149 (543)
-+.|+.++..+.......+.++ +.-+.|++++|.+. .+....+..+++|+.+++.+|.++ .+|....-..+|+.|+
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~ 131 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLD 131 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEe
Confidence 4556677766643322333332 34556899999888 555555555889999999999888 6676555566789999
Q ss_pred cccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCC
Q 040468 150 ISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLS 229 (543)
Q Consensus 150 L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 229 (543)
|.+|.+. .+..+....++.|+.|||+.|.+.......+..-.++++|++++|.++......|..+.+|..+.++.|+++
T Consensus 132 L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit 210 (873)
T KOG4194|consen 132 LRHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT 210 (873)
T ss_pred eeccccc-cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc
Confidence 9999888 666666666888999999999888776667766778999999999988777788888889999999999988
Q ss_pred CcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCC-cccccEEEcCCCccccccCCCCC
Q 040468 230 GEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFS-PAYIEQVHLSKNKIEGRLESVIP 308 (543)
Q Consensus 230 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~ 308 (543)
...+..|.+++.|+.|++..|.+....--.|..+++|+.+.+..|.+.+..+..|. +.+++.|++..|++...-..++.
T Consensus 211 tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf 290 (873)
T KOG4194|consen 211 TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF 290 (873)
T ss_pred ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc
Confidence 66667788899999999988888755445678888999999999988877666554 88899999999988877677778
Q ss_pred CCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCC
Q 040468 309 DSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGH 388 (543)
Q Consensus 309 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~ 388 (543)
++..|+.|++++|.|....++.+..+++|+.|+|+.|+|+...+..|..+.+|++|.+++|++.......|..
T Consensus 291 gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~------- 363 (873)
T KOG4194|consen 291 GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG------- 363 (873)
T ss_pred ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH-------
Confidence 8889999999999988888888888899999999999998767778888899999999999885322222221
Q ss_pred CCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCcee
Q 040468 389 DEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMF 468 (543)
Q Consensus 389 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 468 (543)
+.+|+
T Consensus 364 ---------------------------------------------------------------------------lssL~ 368 (873)
T KOG4194|consen 364 ---------------------------------------------------------------------------LSSLH 368 (873)
T ss_pred ---------------------------------------------------------------------------hhhhh
Confidence 56888
Q ss_pred EEEcccCcccccc---ChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcccCCccccccCcCCcC
Q 040468 469 GIDLSCNKLTGEI---PTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVF 542 (543)
Q Consensus 469 ~L~ls~n~l~~~~---~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l 542 (543)
+|||++|.++..+ ...|..+++|+.|++.+|++..+.-.+|..+.+|++||+-+|.|.+.=|..|..| .||+|
T Consensus 369 ~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~L 444 (873)
T KOG4194|consen 369 KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKEL 444 (873)
T ss_pred hhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhh
Confidence 9999999876444 3457779999999999999986666788999999999999999987778888887 77765
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.98 E-value=1.8e-36 Score=276.90 Aligned_cols=392 Identities=25% Similarity=0.391 Sum_probs=259.7
Q ss_pred cchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhc
Q 040468 37 FPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGT 116 (543)
Q Consensus 37 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~ 116 (543)
+|+++....+++.++.+.+.+. ++++.+ ..+..++.++-.+|++ ...|.++.++.+|..+++.+|.++ ..|.....
T Consensus 106 lp~~i~s~~~l~~l~~s~n~~~-el~~~i-~~~~~l~dl~~~~N~i-~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~ 181 (565)
T KOG0472|consen 106 LPEQIGSLISLVKLDCSSNELK-ELPDSI-GRLLDLEDLDATNNQI-SSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA 181 (565)
T ss_pred ccHHHhhhhhhhhhhcccccee-ecCchH-HHHhhhhhhhcccccc-ccCchHHHHHHHHHHhhccccchh-hCCHHHHH
Confidence 4444455555555555555554 444443 4555566666666665 345556666677777777777776 55555544
Q ss_pred CCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCE
Q 040468 117 YLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMT 196 (543)
Q Consensus 117 ~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 196 (543)
++.|++||...|-++ .+|..++.+.+|..|++..|++. .+|. |.+|..|+++.++.|.+.-.......+++++..
T Consensus 182 -m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~v 256 (565)
T KOG0472|consen 182 -MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLV 256 (565)
T ss_pred -HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhccccccee
Confidence 667777777776665 67777777777777888888777 6662 445777888888887776544455557788888
Q ss_pred EeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCccc-----------------
Q 040468 197 LQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIE----------------- 259 (543)
Q Consensus 197 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~----------------- 259 (543)
||+.+|++. ..|+.++.+.+|.+|++++|.++ .+|..++++ +|+.|-+.+|.+.++-.+.
T Consensus 257 LDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~ 333 (565)
T KOG0472|consen 257 LDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIK 333 (565)
T ss_pred eeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhc
Confidence 888888877 66777777888888888888887 667777777 7888888887654220000
Q ss_pred ------------------------ccCCCCCcEEEccCCcCccCCCCCCCcc---cccEEEcCCCccccccCCCCCCCCC
Q 040468 260 ------------------------FCQLRFLRILDLSNNTIFGTLPSCFSPA---YIEQVHLSKNKIEGRLESVIPDSPN 312 (543)
Q Consensus 260 ------------------------l~~l~~L~~L~l~~~~~~~~~~~~~~~~---~L~~L~l~~~~~~~~~~~~~~~~~~ 312 (543)
...+...+.|++++-+++..+...|... -+..+++++|++... +..+..++.
T Consensus 334 ~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~el-Pk~L~~lke 412 (565)
T KOG0472|consen 334 DDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCEL-PKRLVELKE 412 (565)
T ss_pred cCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhh-hhhhHHHHH
Confidence 0112234444444444444433333321 245556666665433 222333333
Q ss_pred c-cEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCC
Q 040468 313 L-VTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEP 391 (543)
Q Consensus 313 L-~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~ 391 (543)
+ +.+.+++|.+. .+|..+..+++|..|++++|.+. .+|..+..+..|+.|+++.|++. ..|.++..
T Consensus 413 lvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~---------- 479 (565)
T KOG0472|consen 413 LVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYE---------- 479 (565)
T ss_pred HHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhh----------
Confidence 3 23445555554 66777788888888888888877 67777888888888888888875 45544332
Q ss_pred CCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEE
Q 040468 392 VAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGID 471 (543)
Q Consensus 392 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 471 (543)
+..++.+.
T Consensus 480 ------------------------------------------------------------------------lq~lEtll 487 (565)
T KOG0472|consen 480 ------------------------------------------------------------------------LQTLETLL 487 (565)
T ss_pred ------------------------------------------------------------------------HHHHHHHH
Confidence 34566677
Q ss_pred cccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcc
Q 040468 472 LSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG 527 (543)
Q Consensus 472 ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~ 527 (543)
.++|++...-|.++.++.+|++||+.+|.+. .+|..++++.+|++|+++||++.+
T Consensus 488 as~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 488 ASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFRQ 542 (565)
T ss_pred hccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccCC
Confidence 7778888434455999999999999999998 788899999999999999999983
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=3.4e-35 Score=268.52 Aligned_cols=429 Identities=25% Similarity=0.337 Sum_probs=295.9
Q ss_pred ccCCCCCCCceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcC
Q 040468 13 HYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHS 92 (543)
Q Consensus 13 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~ 92 (543)
+...||....++.+.++++.+. .+.+.+.++..+.++++.++..+ ..|.++ ..+..++.++.+++++ ..+|..+..
T Consensus 37 e~e~wW~qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~ai-g~l~~l~~l~vs~n~l-s~lp~~i~s 112 (565)
T KOG0472|consen 37 EGENWWEQVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAI-GELEALKSLNVSHNKL-SELPEQIGS 112 (565)
T ss_pred chhhhhhhcchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHH-HHHHHHHHhhcccchH-hhccHHHhh
Confidence 3455665567888899988887 44556788899999999999887 667665 6778888889998887 567788888
Q ss_pred CCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCE
Q 040468 93 HQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEI 172 (543)
Q Consensus 93 ~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~ 172 (543)
...|+.+++++|.+. +++.++++ +-.++.++..+|++. ..|.++.++.+|..+++.+|.+. ..|..... ++.|++
T Consensus 113 ~~~l~~l~~s~n~~~-el~~~i~~-~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ 187 (565)
T KOG0472|consen 113 LISLVKLDCSSNELK-ELPDSIGR-LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKH 187 (565)
T ss_pred hhhhhhhhcccccee-ecCchHHH-Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHh
Confidence 888999999988888 88888887 678888888888887 56777777778888888888877 66666555 777777
Q ss_pred EEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccc-cCCCCCcEEEccCCc
Q 040468 173 LALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWL-GNLSFLVDIIMPNNN 251 (543)
Q Consensus 173 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~ 251 (543)
++...|.+. ..|..++.+.+|+.|++..|++. ..| .|.++..|+.+.++.|.+. .+|+.. ..++++..|++.+|+
T Consensus 188 ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNk 263 (565)
T KOG0472|consen 188 LDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNK 263 (565)
T ss_pred cccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccc
Confidence 777777665 45666777777777777777766 455 4666666777766666665 344433 356666677777766
Q ss_pred ccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccc-----------------------------
Q 040468 252 LEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGR----------------------------- 302 (543)
Q Consensus 252 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----------------------------- 302 (543)
+.. .|..+..+.+|++||+++|.+++.......+ +|+.|-+.||.+...
T Consensus 264 lke-~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se 341 (565)
T KOG0472|consen 264 LKE-VPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSE 341 (565)
T ss_pred ccc-CchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCc
Confidence 663 3555566666677777777666555444444 566666665543100
Q ss_pred ---------cCC---CCCCCCCccEEEccccccccccCccCCCCCC---CCEEEccCcccc-------------------
Q 040468 303 ---------LES---VIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQ---LSYLLLANNYIE------------------- 348 (543)
Q Consensus 303 ---------~~~---~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~---L~~L~l~~n~i~------------------- 348 (543)
... ......+.+.|++++-+++ .+|..+....+ ...+++++|++.
T Consensus 342 ~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~ls 420 (565)
T KOG0472|consen 342 GGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLS 420 (565)
T ss_pred ccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhh
Confidence 000 0111234455555555555 23322211111 444455554443
Q ss_pred ----cccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCC
Q 040468 349 ----GEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSC 424 (543)
Q Consensus 349 ----~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (543)
+.+|..++.+++|..|++++|.+. .+|.++..
T Consensus 421 nn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~------------------------------------------- 456 (565)
T KOG0472|consen 421 NNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGS------------------------------------------- 456 (565)
T ss_pred cCccccchHHHHhhhcceeeecccchhh-hcchhhhh-------------------------------------------
Confidence 134455556666666666666554 34433322
Q ss_pred CCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccc
Q 040468 425 GRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGT 504 (543)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~ 504 (543)
+..|++||+++|++. ..|..+-.+..|+.+-.++|++..+
T Consensus 457 ---------------------------------------lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~v 496 (565)
T KOG0472|consen 457 ---------------------------------------LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSV 496 (565)
T ss_pred ---------------------------------------hhhhheecccccccc-cchHHHhhHHHHHHHHhcccccccc
Confidence 456889999999888 7888887778888888888999877
Q ss_pred cChhhhccCCCCeeeCCCCcCcccCCccccccCcCCcC
Q 040468 505 IPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVF 542 (543)
Q Consensus 505 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l 542 (543)
.|..+.++.+|.+||+.+|.+. ++|..+++|++|++|
T Consensus 497 d~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hL 533 (565)
T KOG0472|consen 497 DPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHL 533 (565)
T ss_pred ChHHhhhhhhcceeccCCCchh-hCChhhccccceeEE
Confidence 8888999999999999999999 778889999999987
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=5.8e-34 Score=273.97 Aligned_cols=317 Identities=26% Similarity=0.339 Sum_probs=214.1
Q ss_pred ceeEEEeeCCCCCCC-cchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEE
Q 040468 22 QLTSISLSGYIDGGT-FPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLD 100 (543)
Q Consensus 22 ~L~~L~L~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ 100 (543)
-++-.|+++|.+.|. +|..+..+.+++.|.|.+.++. .+|+.+ +.+.+|+.|.+++|++... -..+..++.||.++
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVI 84 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHh
Confidence 378889999999854 8988999999999999998886 788886 8899999999999987433 34577889999999
Q ss_pred cCCCcccc-CCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCc
Q 040468 101 VSNNFFQG-HIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNS 179 (543)
Q Consensus 101 ls~~~i~~-~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 179 (543)
+++|.+.. -+|..+++ +..|..|||++|++. ..|..+.+-+++-.|+|++|++. .+|..++..+..|-.|++++|+
T Consensus 85 ~R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred hhccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccch
Confidence 99988764 47888888 888999999999988 67888888888889999999888 8888888777777777777776
Q ss_pred CCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCccc-ccCcc
Q 040468 180 LQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLE-GLIPI 258 (543)
Q Consensus 180 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~ 258 (543)
+. ..|+.+..+..|++|.+++|.+... ....+..+++|+.|.+++.+-+ .-+|.
T Consensus 162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hf------------------------QLrQLPsmtsL~vLhms~TqRTl~N~Pt 216 (1255)
T KOG0444|consen 162 LE-MLPPQIRRLSMLQTLKLSNNPLNHF------------------------QLRQLPSMTSLSVLHMSNTQRTLDNIPT 216 (1255)
T ss_pred hh-hcCHHHHHHhhhhhhhcCCChhhHH------------------------HHhcCccchhhhhhhcccccchhhcCCC
Confidence 65 3344445555555555555554422 2222333444444444444322 22344
Q ss_pred cccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCC
Q 040468 259 EFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLS 338 (543)
Q Consensus 259 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~ 338 (543)
.+..+.+|..++++.|.+...+...+..++|+.|++++|+++.. ........+|+.|+++.|+++ ..|.++..+++|+
T Consensus 217 sld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~ 294 (1255)
T KOG0444|consen 217 SLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLT 294 (1255)
T ss_pred chhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchhc-cchHHHhhhHHHH
Confidence 55555566666666665554444444455555555555555432 122233456777777777776 6666677777777
Q ss_pred EEEccCccccc-ccchhhhCCCCCCEEeCCCCcc
Q 040468 339 YLLLANNYIEG-EIPVQLCQLKEVQLIDLSHNNL 371 (543)
Q Consensus 339 ~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~n~~ 371 (543)
.|.+.+|+++- -+|..+..+.+|+.+...+|.+
T Consensus 295 kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L 328 (1255)
T KOG0444|consen 295 KLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL 328 (1255)
T ss_pred HHHhccCcccccCCccchhhhhhhHHHHhhcccc
Confidence 77777666652 2455555555555555555544
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=6.7e-33 Score=266.65 Aligned_cols=340 Identities=24% Similarity=0.299 Sum_probs=222.2
Q ss_pred CCceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCccc-ccCCCCCcCCCCCCE
Q 040468 20 KFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLF-GSFRMPIHSHQKLAT 98 (543)
Q Consensus 20 ~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~-~~~~~~~~~~~~L~~ 98 (543)
..+++.|.|...++. .+|+.+..+.+|++|.++.|++.....+ ...++.|+.+.+++|++. ..+|..+-.+..|+.
T Consensus 31 Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGE--Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~ 107 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGE--LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTI 107 (1255)
T ss_pred hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhh--hccchhhHHHhhhccccccCCCCchhccccccee
Confidence 348999999999988 7899999999999999999998744443 478899999999999873 446667788999999
Q ss_pred EEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCC
Q 040468 99 LDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNN 178 (543)
Q Consensus 99 L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n 178 (543)
||||+|.++ +.|..+-. -+++-.|+|++|+|..+...-+.++..|-+|||++|.+. .+|..+.. +..|+.|.+++|
T Consensus 108 lDLShNqL~-EvP~~LE~-AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RR-L~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 108 LDLSHNQLR-EVPTNLEY-AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRR-LSMLQTLKLSNN 183 (1255)
T ss_pred eecchhhhh-hcchhhhh-hcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHH-HhhhhhhhcCCC
Confidence 999999999 99988866 689999999999998544456778999999999999998 88887765 889999999999
Q ss_pred cCCCcCcccccCCCCcCEEeCCCCccC-ccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCc
Q 040468 179 SLQGHIFSKKFSLTNLMTLQLDGNNFS-GEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIP 257 (543)
Q Consensus 179 ~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 257 (543)
.+.......+-.+++|+.|.+++.+-+ ..+|..+..+.+|..++++.|.+. ..|..+.++++|+.|++++|.++.. .
T Consensus 184 PL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL-~ 261 (1255)
T KOG0444|consen 184 PLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITEL-N 261 (1255)
T ss_pred hhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeee-e
Confidence 987655555556667777777776543 234555555555555555555554 4445555555555555555555422 2
Q ss_pred ccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccc-cCCCCCCCCCccEEEccccccccccCccCCCCCC
Q 040468 258 IEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGR-LESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQ 336 (543)
Q Consensus 258 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~ 336 (543)
.......+|+.|+++.|+++..+.....+++|+.|.+.+|+++-. ++..++++.+|+.+..++|.+. .+|..+..|++
T Consensus 262 ~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~k 340 (1255)
T KOG0444|consen 262 MTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVK 340 (1255)
T ss_pred ccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHH
Confidence 222333445555555555443333333344444444444443311 2223344444444444444443 44444444444
Q ss_pred CCEEEccCcccccccchhhhCCCCCCEEeCCCCc
Q 040468 337 LSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNN 370 (543)
Q Consensus 337 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~ 370 (543)
|+.|.|+.|++. .+|+++.-++.|+.||+..|+
T Consensus 341 L~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 341 LQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred HHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 444444444443 344444444444444444443
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=1.8e-31 Score=268.09 Aligned_cols=453 Identities=26% Similarity=0.314 Sum_probs=336.5
Q ss_pred EEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCC
Q 040468 25 SISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNN 104 (543)
Q Consensus 25 ~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~ 104 (543)
++|++.++++ .+|..+..-..+..|++..|.+. ..|-.+..+.-+|+.|+++++.+ +..|..+..+.+|+.|+++.|
T Consensus 2 ~vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~-~~fp~~it~l~~L~~ln~s~n 78 (1081)
T KOG0618|consen 2 HVDASDEQLE-LIPEQILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQI-SSFPIQITLLSHLRQLNLSRN 78 (1081)
T ss_pred CcccccccCc-ccchhhccHHHHHhhhccccccc-cCchHHhhheeeeEEeecccccc-ccCCchhhhHHHHhhcccchh
Confidence 4677777777 56766666566999999999776 44455556777799999999987 677888999999999999999
Q ss_pred ccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcC
Q 040468 105 FFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHI 184 (543)
Q Consensus 105 ~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 184 (543)
.+. ..|..... +.+|++|.|.+|... ..|..+..+++|++|+++.|.+. .+|.-+.. +..+.++..++|....
T Consensus 79 ~i~-~vp~s~~~-~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~-lt~~~~~~~s~N~~~~-- 151 (1081)
T KOG0618|consen 79 YIR-SVPSSCSN-MRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEV-LTAEEELAASNNEKIQ-- 151 (1081)
T ss_pred hHh-hCchhhhh-hhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHh-hhHHHHHhhhcchhhh--
Confidence 998 88877777 889999999999988 78999999999999999999998 88876664 7788888899883221
Q ss_pred cccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCC
Q 040468 185 FSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLR 264 (543)
Q Consensus 185 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 264 (543)
.++... ++.+++..+.+...++.....++. .+++.+|.+. ...+..+++|+.+....|.+....- .-+
T Consensus 152 --~lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~~----~g~ 219 (1081)
T KOG0618|consen 152 --RLGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELEI----SGP 219 (1081)
T ss_pred --hhcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEEe----cCc
Confidence 222222 778888888877666666666555 6999999886 3346788899999999888775422 346
Q ss_pred CCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccC
Q 040468 265 FLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLAN 344 (543)
Q Consensus 265 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~ 344 (543)
+++.|+.++|.+. .....+.+..++.++++.+++++.+ .++..+.+|+.++...|.++ ..|..+....+|+.|.+..
T Consensus 220 ~l~~L~a~~n~l~-~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~ 296 (1081)
T KOG0618|consen 220 SLTALYADHNPLT-TLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAY 296 (1081)
T ss_pred chheeeeccCcce-eeccccccccceeeecchhhhhcch-HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhh
Confidence 7999999999988 5555666889999999999998766 88999999999999999997 8888888999999999999
Q ss_pred cccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCC-CCCCCCCCCCCCCCCCCCccccccccccCCccCCCCC
Q 040468 345 NYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSE-GHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSS 423 (543)
Q Consensus 345 n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~ 423 (543)
|.+. .+|......+.|++|++..|.+. ..|+-+....... ...+ .+|..++.+ .
T Consensus 297 nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln------~s~n~l~~l-----------------p 351 (1081)
T KOG0618|consen 297 NELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLN------VSSNKLSTL-----------------P 351 (1081)
T ss_pred hhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHh------hhhcccccc-----------------c
Confidence 9998 67777788999999999999986 5665333322110 0000 000000000 0
Q ss_pred CCCCCcccccccCCCCCCCCCccceeeeccCCcc--cccccccCceeEEEcccCccccccC-hhhhcccccCeeeCcCCc
Q 040468 424 CGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSY--YYQGRILTSMFGIDLSCNKLTGEIP-TQIGYLTKIHALNLSHNN 500 (543)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~~L~ls~n~l~~~~~-~~l~~l~~L~~L~ls~n~ 500 (543)
+.++... ..+..+..+.+.+.+ .-......+|+.|+|++|++. .+| ..+.+++.|++|+||+|.
T Consensus 352 ~~~e~~~------------~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNk 418 (1081)
T KOG0618|consen 352 SYEENNH------------AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNK 418 (1081)
T ss_pred cccchhh------------HHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccch
Confidence 0000000 000000000000000 000011678999999999999 666 457889999999999999
Q ss_pred cccccChhhhccCCCCeeeCCCCcCcccCCccccccCcCCcCC
Q 040468 501 LTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVFR 543 (543)
Q Consensus 501 i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~ 543 (543)
++ .+|+.+..++.|++|...+|.+. ..| .+..+++|+.++
T Consensus 419 L~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lD 458 (1081)
T KOG0618|consen 419 LT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLD 458 (1081)
T ss_pred hh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEe
Confidence 99 88899999999999999999998 666 578888887653
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.94 E-value=1.5e-29 Score=254.33 Aligned_cols=398 Identities=26% Similarity=0.334 Sum_probs=231.5
Q ss_pred ceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEc
Q 040468 22 QLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDV 101 (543)
Q Consensus 22 ~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l 101 (543)
+|++|+++++.+. .+|..+..+.+|+.|++++|-+. .+|... .++++|+++.|.++.. ...|.++..+++|++|++
T Consensus 46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~-~~~~~l~~lnL~~n~l-~~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSC-SNMRNLQYLNLKNNRL-QSLPASISELKNLQYLDL 121 (1081)
T ss_pred eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhh-hhhhcchhheeccchh-hcCchhHHhhhccccccc
Confidence 5777777777666 55666777777777777777665 555443 6677777777777765 566667777777777777
Q ss_pred CCCccccCCchhhhcCCCCCcEEEcCCC-------------------cCccCCchhhcCCCCCCEEecccccccccCchH
Q 040468 102 SNNFFQGHIPVEIGTYLPGLMEFNLSRN-------------------AFNGSIPSSFADMQMLARLDISYNQLTGEIPER 162 (543)
Q Consensus 102 s~~~i~~~~~~~~~~~l~~L~~L~L~~~-------------------~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~ 162 (543)
+.|.+. .+|.-+.. +..++.+..++| .+.+.++.++..++. .|+|.+|.+. ...
T Consensus 122 S~N~f~-~~Pl~i~~-lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d-- 194 (1081)
T KOG0618|consen 122 SFNHFG-PIPLVIEV-LTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD-- 194 (1081)
T ss_pred chhccC-CCchhHHh-hhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh--
Confidence 777665 55544433 444444444444 222222222222222 2444444333 111
Q ss_pred hhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCC
Q 040468 163 MATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFL 242 (543)
Q Consensus 163 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 242 (543)
...+++|+.+....|++... --..++++.|+...|.++...+ -.-..+|++++++.+.+. ..|.|+..+.+|
T Consensus 195 -ls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nl 266 (1081)
T KOG0618|consen 195 -LSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANL 266 (1081)
T ss_pred -hhhccchhhhhhhhcccceE----EecCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhcccc
Confidence 11123333333333322211 0113344455555554442211 122346777777777766 445777777777
Q ss_pred cEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCC-----------------
Q 040468 243 VDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLES----------------- 305 (543)
Q Consensus 243 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----------------- 305 (543)
+.+....|.+. ..|..+....+|+.+.+..|.+...++.....++|++|++..|.+...+..
T Consensus 267 e~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n 345 (1081)
T KOG0618|consen 267 EALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSN 345 (1081)
T ss_pred eEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhc
Confidence 77777777664 334445555556666666666554333333355666666666555322211
Q ss_pred --------CCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCC
Q 040468 306 --------VIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPP 377 (543)
Q Consensus 306 --------~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 377 (543)
.-...+.|+.|.+.+|.+++.....+.+++.|+.|+|++|++.......+.+++.|+.|++|||++. .+|.
T Consensus 346 ~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~ 424 (1081)
T KOG0618|consen 346 KLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPD 424 (1081)
T ss_pred cccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhH
Confidence 1112356777888888888766667788888888888888887444456778888888888888885 4554
Q ss_pred CcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcc
Q 040468 378 CLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSY 457 (543)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (543)
+...
T Consensus 425 tva~---------------------------------------------------------------------------- 428 (1081)
T KOG0618|consen 425 TVAN---------------------------------------------------------------------------- 428 (1081)
T ss_pred HHHh----------------------------------------------------------------------------
Confidence 4433
Q ss_pred cccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCcccccc-ChhhhccCCCCeeeCCCCcC
Q 040468 458 YYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTI-PTTFSNLKQIESLDLSYNLL 525 (543)
Q Consensus 458 ~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~-~~~~~~l~~L~~L~l~~n~i 525 (543)
++.|++|...+|++. .+| .+..++.|+.+|+|.|.++... |+.... ++|+.||++||.-
T Consensus 429 ------~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 429 ------LGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred ------hhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 446677777777777 566 5777777777777777776432 222211 6777777777764
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=4.6e-24 Score=238.56 Aligned_cols=342 Identities=22% Similarity=0.233 Sum_probs=224.4
Q ss_pred CCCCcCCCCCCEEEcCCCcc------ccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCc
Q 040468 87 RMPIHSHQKLATLDVSNNFF------QGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIP 160 (543)
Q Consensus 87 ~~~~~~~~~L~~L~ls~~~i------~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 160 (543)
+.+|.+|++|+.|.+..+.. ...+|..+.....+|+.|++.++++. .+|..+ ...+|++|++.++.+. .++
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~ 627 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLW 627 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccc
Confidence 34466677777777654321 12344444443345777777776665 455555 3467777777777666 555
Q ss_pred hHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCC
Q 040468 161 ERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLS 240 (543)
Q Consensus 161 ~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 240 (543)
.++. .+++|+.++++++......+ .+..+++|+.|++.+|......|..+..+++|+.|++++|.....+|..+ +++
T Consensus 628 ~~~~-~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~ 704 (1153)
T PLN03210 628 DGVH-SLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK 704 (1153)
T ss_pred cccc-cCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence 5443 36677777777654332332 35566777777777766555666667777777777777765444555433 567
Q ss_pred CCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccc-------cCCCCCCCCCc
Q 040468 241 FLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGR-------LESVIPDSPNL 313 (543)
Q Consensus 241 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~~~~L 313 (543)
+|+.|++++|......|.. ..+|+.|+++++.+.. .+....+++|+.|++.++..... .+......++|
T Consensus 705 sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL 780 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE-FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL 780 (1153)
T ss_pred CCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc-ccccccccccccccccccchhhccccccccchhhhhccccc
Confidence 7777777777554443432 3467777777777653 33333466677776665432111 11122234678
Q ss_pred cEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCC
Q 040468 314 VTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVA 393 (543)
Q Consensus 314 ~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~ 393 (543)
+.|++++|.....+|..++.+++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|.
T Consensus 781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~---------------- 843 (1153)
T PLN03210 781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD---------------- 843 (1153)
T ss_pred hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc----------------
Confidence 888888887666777788888888888888875444666654 678888888888765422221
Q ss_pred CCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcc
Q 040468 394 PTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLS 473 (543)
Q Consensus 394 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls 473 (543)
..++|++|+|+
T Consensus 844 ---------------------------------------------------------------------~~~nL~~L~Ls 854 (1153)
T PLN03210 844 ---------------------------------------------------------------------ISTNISDLNLS 854 (1153)
T ss_pred ---------------------------------------------------------------------cccccCEeECC
Confidence 03589999999
Q ss_pred cCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcC
Q 040468 474 CNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 525 (543)
Q Consensus 474 ~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i 525 (543)
+|.++ .+|.++..+++|+.|+|++|.-...+|..+..+++|+.+++++|.-
T Consensus 855 ~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 855 RTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred CCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 99999 8999999999999999999775547888889999999999999974
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=1.1e-26 Score=212.60 Aligned_cols=410 Identities=21% Similarity=0.203 Sum_probs=239.8
Q ss_pred CCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEeccc-ccccccCchHhhhCCCCCCE
Q 040468 94 QKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISY-NQLTGEIPERMATGCFSLEI 172 (543)
Q Consensus 94 ~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~-~~~~~~~~~~~~~~~~~L~~ 172 (543)
+.-..++|..|.|+ .+|...|+.+++|+.|||++|.|+.+.|++|.++++|..|.+-+ |+|+ .+|++.|.++.+++.
T Consensus 67 ~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 67 PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQR 144 (498)
T ss_pred CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHH
Confidence 46778999999999 99999999999999999999999988999999999988877766 8888 999999999999999
Q ss_pred EEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcc
Q 040468 173 LALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNL 252 (543)
Q Consensus 173 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 252 (543)
|.+.-|++.......+..++++..|.+.+|.+...-...+..+..++.+.+..|.+-. ..+++.+.... ..+
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~~-a~~-- 216 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADDL-AMN-- 216 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhhHH-hhc--
Confidence 9999999998888889999999999999998874444467788888888877766321 11112111100 000
Q ss_pred cccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEE---EcCCCccccc-cCCCCCCCCCccEEEccccccccccC
Q 040468 253 EGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQV---HLSKNKIEGR-LESVIPDSPNLVTLDLSYNCLHGSIP 328 (543)
Q Consensus 253 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L---~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~i~~~~~ 328 (543)
|..++.........+.+..+..+...-+.+. ++.+ -...+...+. +...|..+++|++|++++|+++.+.+
T Consensus 217 ----~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~-~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~ 291 (498)
T KOG4237|consen 217 ----PIETSGARCVSPYRLYYKRINQEDARKFLCS-LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED 291 (498)
T ss_pred ----hhhcccceecchHHHHHHHhcccchhhhhhh-HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh
Confidence 1111111111222222222222222211111 1111 0111111111 22235555666666666666665555
Q ss_pred ccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 040468 329 NRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASS 408 (543)
Q Consensus 329 ~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 408 (543)
.+|.+...++.|.|..|++...-...|.++..|+.|++++|+++...|..|..........-...|..+.|...|-..|.
T Consensus 292 ~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wl 371 (498)
T KOG4237|consen 292 GAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWL 371 (498)
T ss_pred hhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHH
Confidence 55666666666666666555433444555666666666666665555555555555555555555555666555444444
Q ss_pred ccccccCCccCCCCCCCCCCc---------------ccccc--cCCCCCCCCCccceeeeccCCcccccccccCceeEEE
Q 040468 409 YTKTALNATTPFSSSCGRGYP---------------YALDY--VGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGID 471 (543)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~---------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 471 (543)
.... .....++..+.+-+.. -+..+ .+.=.++.+..+++...+.+....+...++...++|+
T Consensus 372 r~~~-~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~tely 450 (498)
T KOG4237|consen 372 RKKS-VVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELY 450 (498)
T ss_pred hhCC-CCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCchhHHHh
Confidence 3333 1111111111111100 00000 0111112233445555555555566666666777777
Q ss_pred cccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCC
Q 040468 472 LSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523 (543)
Q Consensus 472 ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n 523 (543)
+.+|.++ .+|.. .+.+| .+++++|+|...---.|.++.+|.+|=|++|
T Consensus 451 l~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 451 LDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred cccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 7777777 66665 55666 7777777776433444666677777666654
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=2.6e-22 Score=224.62 Aligned_cols=341 Identities=21% Similarity=0.212 Sum_probs=260.7
Q ss_pred CCCCCCCceeEEEeeCCCCC------CCcchhccCC-CCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCC
Q 040468 15 NSLTPKFQLTSISLSGYIDG------GTFPKFLYHQ-HDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFR 87 (543)
Q Consensus 15 ~~~~~~~~L~~L~L~~~~~~------~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 87 (543)
..+..+.+|+.|.+..+... ..+|..+..+ ++|+.|.+.++.+. .+|..+ .+.+|++|++.++++ ..++
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l-~~L~ 627 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKL-EKLW 627 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccc-cccc
Confidence 34555668888888655432 2356666665 46999999998876 677654 578999999999987 4567
Q ss_pred CCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCC
Q 040468 88 MPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGC 167 (543)
Q Consensus 88 ~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 167 (543)
.++..+++|++|+++++.....+|. +.. +++|++|++++|.....+|..+.++++|+.|++++|.....+|... .+
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~-l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l 703 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSM-ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NL 703 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCc-ccc-CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CC
Confidence 7888999999999998764436664 443 7899999999987666788899999999999999876555777655 48
Q ss_pred CCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCC-------CcccccccCCC
Q 040468 168 FSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLS-------GEIPRWLGNLS 240 (543)
Q Consensus 168 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-------~~~~~~l~~~~ 240 (543)
++|+.|++++|......+. ...+|+.|++.++.+. .+|..+ .+++|+.|.+.++... ...+.....++
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccc
Confidence 8999999999865433332 2468899999999876 555544 5678888888764321 11122233457
Q ss_pred CCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccc
Q 040468 241 FLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSY 320 (543)
Q Consensus 241 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 320 (543)
+|+.|++++|.....+|..+..+++|+.|++++|...+.++....+++|+.|++++|......+.. .++|++|++++
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~ 855 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STNISDLNLSR 855 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccccCEeECCC
Confidence 899999999987777888999999999999999865555666557899999999998654433332 36899999999
Q ss_pred cccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468 321 NCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372 (543)
Q Consensus 321 ~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 372 (543)
|.++ .+|.++..+++|+.|++.+|+-...+|..+..+++|+.+++++|.-.
T Consensus 856 n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 856 TGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred CCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence 9998 78889999999999999997554467777889999999999999654
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=3.2e-25 Score=203.16 Aligned_cols=277 Identities=23% Similarity=0.212 Sum_probs=158.1
Q ss_pred CCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCC-CcCccCCchhhcCCCCCCEE
Q 040468 70 TNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSR-NAFNGSIPSSFADMQMLARL 148 (543)
Q Consensus 70 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~-~~i~~~~~~~l~~l~~L~~L 148 (543)
..-..++|..|+|+...+.+|+.+++||.|||++|.|. .+..+.++.++++.+|.+.+ |+|+......|+++..|+.|
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 34455555555555555555555666666666655555 44444444455555555444 55553333445555555555
Q ss_pred ecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCc------------cCchhhhcCC
Q 040468 149 DISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSG------------EIPESLSKCR 216 (543)
Q Consensus 149 ~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~------------~~~~~l~~~~ 216 (543)
.+.-|++. .+....+..++++..|.+.+|.+.......+..+..++.+.+..|.+.. ..+-.++...
T Consensus 146 llNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 146 LLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred hcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 55555555 4555555555555555555555543333345555555555554443210 0111112222
Q ss_pred CCCEEEccCCcCCCcccccccCC-CCCcEEEccCCccccc-CcccccCCCCCcEEEccCCcCccCCCCCCC-cccccEEE
Q 040468 217 RLGGLYLSDNHLSGEIPRWLGNL-SFLVDIIMPNNNLEGL-IPIEFCQLRFLRILDLSNNTIFGTLPSCFS-PAYIEQVH 293 (543)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~ 293 (543)
...-..+.+.++....+..|... ..+.+-..+.+..... +...|..+++|+.+++++|.++.+-+.+|. ...+++|.
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY 304 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence 22222233333332223323221 1111111122222222 223577888888888888888877777665 77888888
Q ss_pred cCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccc
Q 040468 294 LSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIE 348 (543)
Q Consensus 294 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~ 348 (543)
+.+|++...-..+|.++..|+.|++.+|+|+...|.+|.....|..|++-.|++.
T Consensus 305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 8888887666777888888888888888888878888888888888888888774
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=4.5e-20 Score=192.12 Aligned_cols=63 Identities=24% Similarity=0.355 Sum_probs=34.6
Q ss_pred ceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcccCCccc
Q 040468 466 SMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQL 533 (543)
Q Consensus 466 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~ 533 (543)
+|+.|++++|+++ .+|... .+|+.|++++|.++ .+|..|..+++|+.|++++|++++.++..+
T Consensus 403 ~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 403 ELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 4555666666655 344322 24555666666665 455556666666666666666655444433
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.82 E-value=2.7e-19 Score=186.32 Aligned_cols=267 Identities=22% Similarity=0.300 Sum_probs=190.7
Q ss_pred CCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEe
Q 040468 119 PGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQ 198 (543)
Q Consensus 119 ~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 198 (543)
.+-..|+++++.++ .+|..+. ++|+.|++.+|+++ .+|. .+++|++|++++|.++.. +. ..++|+.|+
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV---LPPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcc-cC---cccccceee
Confidence 34667788887777 5666554 46788888888777 5553 256788888888877743 22 246778888
Q ss_pred CCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCcc
Q 040468 199 LDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFG 278 (543)
Q Consensus 199 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 278 (543)
+.+|.+. .+|.. ...|+.|++++|.+. .+|. ..++|+.|++++|.+.+. |.. ..+|+.|++++|.+..
T Consensus 269 Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~~ 336 (788)
T PRK15387 269 IFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLTS 336 (788)
T ss_pred ccCCchh-hhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCccccC-CCC---cccccccccccCcccc
Confidence 8888776 33332 256778888888776 3343 246788888888888754 322 2457788888888775
Q ss_pred CCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCC
Q 040468 279 TLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQL 358 (543)
Q Consensus 279 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l 358 (543)
.+ .. +.+|+.|++++|++++.+. . .++|+.|++++|.+. .+|.. ..+|+.|++++|+++ .+|.. .
T Consensus 337 LP-~l--p~~Lq~LdLS~N~Ls~LP~-l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~ 401 (788)
T PRK15387 337 LP-TL--PSGLQELSVSDNQLASLPT-L---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL---P 401 (788)
T ss_pred cc-cc--ccccceEecCCCccCCCCC-C---Ccccceehhhccccc-cCccc---ccccceEEecCCccc-CCCCc---c
Confidence 33 22 3578899999988875432 2 257888899999888 45543 356889999999988 45542 3
Q ss_pred CCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCC
Q 040468 359 KEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSR 438 (543)
Q Consensus 359 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (543)
++|+.|++++|.+. .+|..
T Consensus 402 s~L~~LdLS~N~Ls-sIP~l------------------------------------------------------------ 420 (788)
T PRK15387 402 SELKELMVSGNRLT-SLPML------------------------------------------------------------ 420 (788)
T ss_pred cCCCEEEccCCcCC-CCCcc------------------------------------------------------------
Confidence 67889999999875 23321
Q ss_pred CCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhc
Q 040468 439 TPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSN 511 (543)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~ 511 (543)
+.+|+.|++++|+++ .+|..+..+++|+.|+|++|++++..|..+..
T Consensus 421 -------------------------~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 421 -------------------------PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred -------------------------hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 246788999999999 89999999999999999999999888777643
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=9e-18 Score=176.18 Aligned_cols=201 Identities=27% Similarity=0.388 Sum_probs=90.5
Q ss_pred CCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEcc
Q 040468 145 LARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLS 224 (543)
Q Consensus 145 L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 224 (543)
...|++++++++ .+|..+ .++++.|++++|.+... +..+ .++|+.|++++|.++ .+|..+. .+|+.|+++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~LtsL-P~~l--~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 180 KTELRLKILGLT-TIPACI---PEQITTLILDNNELKSL-PENL--QGNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred ceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCcC-Chhh--ccCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 344444444444 334322 22344444444444422 1111 124445555444444 2232221 245555555
Q ss_pred CCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccC
Q 040468 225 DNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLE 304 (543)
Q Consensus 225 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 304 (543)
+|.+. .+|..+. .+|+.|++++|.+.. +|..+. ++|+.|++++|.+....... +++|+.|++++|.++..+.
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~LP~~l--p~sL~~L~Ls~N~Lt~LP~ 321 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRTLPAHL--PSGITHLNVQSNSLTALPE 321 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccccCcccc--hhhHHHHHhcCCccccCCc
Confidence 55544 2333222 245555555555543 233222 34555555555554322111 2345555555555553221
Q ss_pred CCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468 305 SVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372 (543)
Q Consensus 305 ~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 372 (543)
. + .++|+.|++++|.++ .+|..+. ++|+.|++++|+++ .+|..+ .++|++|++++|.+.
T Consensus 322 ~-l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt 380 (754)
T PRK15370 322 T-L--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT 380 (754)
T ss_pred c-c--cccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC
Confidence 1 1 145666666666655 3443332 45666666666655 344433 245666666666554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.72 E-value=6e-17 Score=170.04 Aligned_cols=247 Identities=25% Similarity=0.377 Sum_probs=182.7
Q ss_pred CCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEc
Q 040468 168 FSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIM 247 (543)
Q Consensus 168 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 247 (543)
.+...|+++++.++.. +..+ .+.++.|++++|.++ .+|..+. .+|+.|++++|.+. .+|..+. +.|+.|++
T Consensus 178 ~~~~~L~L~~~~LtsL-P~~I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLTTI-PACI--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcCcC-Cccc--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 3567889988887743 3333 357999999999988 5555443 58999999999887 4555442 47899999
Q ss_pred cCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEcccccccccc
Q 040468 248 PNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSI 327 (543)
Q Consensus 248 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 327 (543)
++|.+.. +|..+. .+|+.|++++|.+...+... +++|+.|++++|.++..+. .+. ++|+.|++++|.++ .+
T Consensus 249 s~N~L~~-LP~~l~--s~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls~N~Lt~LP~-~lp--~sL~~L~Ls~N~Lt-~L 319 (754)
T PRK15370 249 SINRITE-LPERLP--SALQSLDLFHNKISCLPENL--PEELRYLSVYDNSIRTLPA-HLP--SGITHLNVQSNSLT-AL 319 (754)
T ss_pred cCCccCc-CChhHh--CCCCEEECcCCccCcccccc--CCCCcEEECCCCccccCcc-cch--hhHHHHHhcCCccc-cC
Confidence 9998884 455553 57999999999888543322 4689999999998875432 222 47899999999988 45
Q ss_pred CccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccc
Q 040468 328 PNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYAS 407 (543)
Q Consensus 328 ~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 407 (543)
|..+ .++|+.|++++|.++ .+|..+ .++|+.|++++|++. .+|..+
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~L~-~LP~~l---------------------------- 365 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALT-SLPASL--PPELQVLDVSKNQIT-VLPETL---------------------------- 365 (754)
T ss_pred Cccc--cccceeccccCCccc-cCChhh--cCcccEEECCCCCCC-cCChhh----------------------------
Confidence 5443 367999999999988 466655 378999999999875 333221
Q ss_pred cccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhc
Q 040468 408 SYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGY 487 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~ 487 (543)
+++|++|++++|.++ .+|..+.
T Consensus 366 --------------------------------------------------------p~~L~~LdLs~N~Lt-~LP~~l~- 387 (754)
T PRK15370 366 --------------------------------------------------------PPTITTLDVSRNALT-NLPENLP- 387 (754)
T ss_pred --------------------------------------------------------cCCcCEEECCCCcCC-CCCHhHH-
Confidence 357889999999998 6787665
Q ss_pred ccccCeeeCcCCccccccChhhhc----cCCCCeeeCCCCcCc
Q 040468 488 LTKIHALNLSHNNLTGTIPTTFSN----LKQIESLDLSYNLLH 526 (543)
Q Consensus 488 l~~L~~L~ls~n~i~~~~~~~~~~----l~~L~~L~l~~n~i~ 526 (543)
..|+.|++++|.+. .+|+.+.+ ++++..|++.+|+++
T Consensus 388 -~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 -AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 36999999999998 56655544 478899999999985
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=5.6e-18 Score=165.26 Aligned_cols=162 Identities=22% Similarity=0.359 Sum_probs=97.2
Q ss_pred ccccEEEcCCCccccc----cCCCCCCCCCccEEEccccccccc----cCccCCCCCCCCEEEccCcccccc----cchh
Q 040468 287 AYIEQVHLSKNKIEGR----LESVIPDSPNLVTLDLSYNCLHGS----IPNRIDRLPQLSYLLLANNYIEGE----IPVQ 354 (543)
Q Consensus 287 ~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~i~~~----~~~~l~~~~~L~~L~l~~n~i~~~----~~~~ 354 (543)
++|++|++++|.+++. ....+..+++|++|++++|.+++. ++..+..+++|+.|++++|.+++. +...
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 3445555555544421 122344556777777777777632 223345556788888888877643 2344
Q ss_pred hhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccc
Q 040468 355 LCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDY 434 (543)
Q Consensus 355 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (543)
+..+++|++|++++|++.+.....+...-
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~--------------------------------------------------- 245 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASAL--------------------------------------------------- 245 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHH---------------------------------------------------
Confidence 55678888888888877532111110000
Q ss_pred cCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccc----cChhhhcccccCeeeCcCCccccc----cC
Q 040468 435 VGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGE----IPTQIGYLTKIHALNLSHNNLTGT----IP 506 (543)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~ls~n~i~~~----~~ 506 (543)
. ...+.|++|++++|.+++. ++..+..+++|+++++++|.+... ..
T Consensus 246 -------------------------~-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~ 299 (319)
T cd00116 246 -------------------------L-SPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLA 299 (319)
T ss_pred -------------------------h-ccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHH
Confidence 0 0035788888888887622 334566678888888888888854 34
Q ss_pred hhhhcc-CCCCeeeCCCCcC
Q 040468 507 TTFSNL-KQIESLDLSYNLL 525 (543)
Q Consensus 507 ~~~~~l-~~L~~L~l~~n~i 525 (543)
+.+... +.|+.|++.+|++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 300 ESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHhhcCCchhhcccCCCCC
Confidence 444444 6888888888864
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.67 E-value=1e-17 Score=163.50 Aligned_cols=272 Identities=22% Similarity=0.226 Sum_probs=138.1
Q ss_pred EEccCCccc-ccCCCCCcCCCCCCEEEcCCCccccC----CchhhhcCCCCCcEEEcCCCcCcc------CCchhhcCCC
Q 040468 75 LLLANNSLF-GSFRMPIHSHQKLATLDVSNNFFQGH----IPVEIGTYLPGLMEFNLSRNAFNG------SIPSSFADMQ 143 (543)
Q Consensus 75 L~L~~~~~~-~~~~~~~~~~~~L~~L~ls~~~i~~~----~~~~~~~~l~~L~~L~L~~~~i~~------~~~~~l~~l~ 143 (543)
|+|.++.+. ......+..+.+|++|+++++.+++. ++..+.. .+.+++++++++.+.. .++..+..++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~-~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRP-QPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhh-CCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 555555554 22233345566678888887776432 2222222 5567777777766541 1234455566
Q ss_pred CCCEEecccccccccCchHhhhCCC---CCCEEEccCCcCCCc----CcccccCC-CCcCEEeCCCCccCcc----Cchh
Q 040468 144 MLARLDISYNQLTGEIPERMATGCF---SLEILALSNNSLQGH----IFSKKFSL-TNLMTLQLDGNNFSGE----IPES 211 (543)
Q Consensus 144 ~L~~L~L~~~~~~~~~~~~~~~~~~---~L~~L~l~~n~~~~~----~~~~l~~l-~~L~~L~l~~~~~~~~----~~~~ 211 (543)
+|++|++++|.+....+..+. .+. +|++|++++|++.+. ....+..+ ++|+.|++.+|.++.. .+..
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~-~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLE-SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred ceeEEEccCCCCChhHHHHHH-HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 777777777766533332222 122 366666666665521 11223334 5566666666655421 1223
Q ss_pred hhcCCCCCEEEccCCcCCCc----ccccccCCCCCcEEEccCCcccccC----cccccCCCCCcEEEccCCcCccCCCCC
Q 040468 212 LSKCRRLGGLYLSDNHLSGE----IPRWLGNLSFLVDIIMPNNNLEGLI----PIEFCQLRFLRILDLSNNTIFGTLPSC 283 (543)
Q Consensus 212 l~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~ 283 (543)
+..+++|++|++++|.+... .+..+...++|+.|++++|.+.+.. ...+..+
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~-------------------- 220 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASL-------------------- 220 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhccc--------------------
Confidence 33444555555555544421 1112233344555555544443211 1122233
Q ss_pred CCcccccEEEcCCCccccccCC-----CCCCCCCccEEEcccccccc----ccCccCCCCCCCCEEEccCcccccc----
Q 040468 284 FSPAYIEQVHLSKNKIEGRLES-----VIPDSPNLVTLDLSYNCLHG----SIPNRIDRLPQLSYLLLANNYIEGE---- 350 (543)
Q Consensus 284 ~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~i~~----~~~~~l~~~~~L~~L~l~~n~i~~~---- 350 (543)
++|+.|++++|.+++.... .....+.|++|++++|.+++ .+...+..+++|+.+++++|.+++.
T Consensus 221 ---~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~ 297 (319)
T cd00116 221 ---KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQL 297 (319)
T ss_pred ---CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHH
Confidence 4445555555444321110 11124677778887777752 2234455567788888888887744
Q ss_pred cchhhhCC-CCCCEEeCCCCcc
Q 040468 351 IPVQLCQL-KEVQLIDLSHNNL 371 (543)
Q Consensus 351 ~~~~l~~l-~~L~~L~l~~n~~ 371 (543)
....+... +.|+.+++.+|++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 298 LAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHhhcCCchhhcccCCCCC
Confidence 22333334 6778888877763
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=2.2e-17 Score=134.78 Aligned_cols=169 Identities=28% Similarity=0.487 Sum_probs=115.1
Q ss_pred CCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCC
Q 040468 280 LPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLK 359 (543)
Q Consensus 280 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~ 359 (543)
++..+..+.++.|.+++|+++.. +..+..+.+|+.|++++|++. ..|..+.++++|+.|++.-|++. ..|..|..++
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~v-ppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p 102 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTVV-PPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP 102 (264)
T ss_pred cccccchhhhhhhhcccCceeec-CCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc
Confidence 33444456666677777777633 334556677777777777777 66777777777777777777776 6677777777
Q ss_pred CCCEEeCCCCcccc-cCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCC
Q 040468 360 EVQLIDLSHNNLSG-HIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSR 438 (543)
Q Consensus 360 ~L~~L~l~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (543)
-|+.||+.+|++.. ..|.-|..
T Consensus 103 ~levldltynnl~e~~lpgnff~--------------------------------------------------------- 125 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFY--------------------------------------------------------- 125 (264)
T ss_pred hhhhhhccccccccccCCcchhH---------------------------------------------------------
Confidence 77777777777652 12211111
Q ss_pred CCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCee
Q 040468 439 TPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESL 518 (543)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L 518 (543)
++.|+-|+|+.|.++ .+|..++.+++|+.|.+.+|.+. ..|..++.+..|+.|
T Consensus 126 -------------------------m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 126 -------------------------MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLREL 178 (264)
T ss_pred -------------------------HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHH
Confidence 456677777777777 67777777777777777777777 677777777777777
Q ss_pred eCCCCcCcccCCcccccc
Q 040468 519 DLSYNLLHGKIPSQLTVL 536 (543)
Q Consensus 519 ~l~~n~i~~~~~~~~~~l 536 (543)
.|.+|+++ ++|..++.+
T Consensus 179 hiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 179 HIQGNRLT-VLPPELANL 195 (264)
T ss_pred hcccceee-ecChhhhhh
Confidence 77777777 555555544
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.51 E-value=5e-16 Score=126.91 Aligned_cols=180 Identities=26% Similarity=0.419 Sum_probs=143.4
Q ss_pred ccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCE
Q 040468 260 FCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSY 339 (543)
Q Consensus 260 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~ 339 (543)
+..+..++.|.+++|.++...+....+.+|+.|++.+|+++. .+..++.++.|+.|++.-|++. ..|..|+.+|.|+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 335667778888888888777766668888888888888874 4556788899999999999888 78899999999999
Q ss_pred EEccCccccc-ccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCcc
Q 040468 340 LLLANNYIEG-EIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATT 418 (543)
Q Consensus 340 L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~ 418 (543)
|++.+|++.+ .+|..|..+..|+-|.+++|.+. .+|+++.+
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~------------------------------------- 148 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGK------------------------------------- 148 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhh-------------------------------------
Confidence 9999998864 57888888899999999999885 56666544
Q ss_pred CCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcC
Q 040468 419 PFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSH 498 (543)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~ 498 (543)
+++|+.|.+..|.+- .+|..++.++.|++|.|.+
T Consensus 149 ---------------------------------------------lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 149 ---------------------------------------------LTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred ---------------------------------------------hcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 568999999999988 7999999999999999999
Q ss_pred CccccccChhhhccC---CCCeeeCCCCcCc
Q 040468 499 NNLTGTIPTTFSNLK---QIESLDLSYNLLH 526 (543)
Q Consensus 499 n~i~~~~~~~~~~l~---~L~~L~l~~n~i~ 526 (543)
|+++ ++|..++.+. +=+.+...+|+.-
T Consensus 183 nrl~-vlppel~~l~l~~~k~v~r~E~NPwv 212 (264)
T KOG0617|consen 183 NRLT-VLPPELANLDLVGNKQVMRMEENPWV 212 (264)
T ss_pred ceee-ecChhhhhhhhhhhHHHHhhhhCCCC
Confidence 9999 7776666553 3344555666654
No 23
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.21 E-value=3.5e-12 Score=113.99 Aligned_cols=227 Identities=24% Similarity=0.260 Sum_probs=148.1
Q ss_pred hhcCCCCCEEEccCCcC--------CCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCC
Q 040468 212 LSKCRRLGGLYLSDNHL--------SGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSC 283 (543)
Q Consensus 212 l~~~~~L~~L~l~~~~~--------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 283 (543)
+.-+..|..|..++..- ...+|-.+.-+.+|..+.++.|.-..+. .....-|.|..+.+.+..+.. .+..
T Consensus 178 ldf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~-~~~~~kptl~t~~v~~s~~~~-~~~l 255 (490)
T KOG1259|consen 178 LDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIV-DIELLKPTLQTICVHNTTIQD-VPSL 255 (490)
T ss_pred HHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhhee-ceeecCchhheeeeecccccc-cccc
Confidence 34456777777765421 1122222333556666666666443221 111223556666666554332 1221
Q ss_pred CCcccccEEEcCC-CccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCC
Q 040468 284 FSPAYIEQVHLSK-NKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQ 362 (543)
Q Consensus 284 ~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~ 362 (543)
.....+....... .-.+|.....+..+..|+.+|+++|.|+ .+...+.-.|.++.|+++.|.+... ..++.+++|.
T Consensus 256 ~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~ 332 (490)
T KOG1259|consen 256 LPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQ 332 (490)
T ss_pred cchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccce
Confidence 1111121111111 1122333334556688999999999999 6778888899999999999999843 3378899999
Q ss_pred EEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCC
Q 040468 363 LIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPM 442 (543)
Q Consensus 363 ~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (543)
.||+++|.+++. ..|.
T Consensus 333 ~LDLS~N~Ls~~-----~Gwh----------------------------------------------------------- 348 (490)
T KOG1259|consen 333 LLDLSGNLLAEC-----VGWH----------------------------------------------------------- 348 (490)
T ss_pred EeecccchhHhh-----hhhH-----------------------------------------------------------
Confidence 999999998631 1111
Q ss_pred CCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCcccc-ccChhhhccCCCCeeeCC
Q 040468 443 GKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTG-TIPTTFSNLKQIESLDLS 521 (543)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~-~~~~~~~~l~~L~~L~l~ 521 (543)
..+-|++.|.|+.|.+. ...++..+-+|..||+++|+|.. .-...|+++|.|+++.+.
T Consensus 349 -------------------~KLGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 349 -------------------LKLGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred -------------------hhhcCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence 01568999999999998 45678999999999999999974 234679999999999999
Q ss_pred CCcCccc
Q 040468 522 YNLLHGK 528 (543)
Q Consensus 522 ~n~i~~~ 528 (543)
+|++.+.
T Consensus 408 ~NPl~~~ 414 (490)
T KOG1259|consen 408 GNPLAGS 414 (490)
T ss_pred CCCcccc
Confidence 9999843
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.20 E-value=1.7e-12 Score=118.55 Aligned_cols=250 Identities=19% Similarity=0.196 Sum_probs=144.7
Q ss_pred ccCCCCcCEEeCCCCccCcc----CchhhhcCCCCCEEEccCCcCC---Cc-------ccccccCCCCCcEEEccCCccc
Q 040468 188 KFSLTNLMTLQLDGNNFSGE----IPESLSKCRRLGGLYLSDNHLS---GE-------IPRWLGNLSFLVDIIMPNNNLE 253 (543)
Q Consensus 188 l~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~---~~-------~~~~l~~~~~L~~L~l~~~~~~ 253 (543)
+..+..++++++++|.+... +...+...+.|+..++++-... .. +...+..+|.|+.+++++|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 34566788888888876532 2344556667777777653211 11 1233455667777777777665
Q ss_pred ccCccc----ccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccc---
Q 040468 254 GLIPIE----FCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGS--- 326 (543)
Q Consensus 254 ~~~~~~----l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~--- 326 (543)
...++. +.++..|+.|.+.+|.+........ -..|..|. .....+.-+.|+.+....|++.+.
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l-~~al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~ga~ 175 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRL-GRALFELA---------VNKKAASKPKLRVFICGRNRLENGGAT 175 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHH-HHHHHHHH---------HHhccCCCcceEEEEeeccccccccHH
Confidence 333332 3455666777776665542211110 01111111 011123346677777777766532
Q ss_pred -cCccCCCCCCCCEEEccCccccc----ccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCC
Q 040468 327 -IPNRIDRLPQLSYLLLANNYIEG----EIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGR 401 (543)
Q Consensus 327 -~~~~l~~~~~L~~L~l~~n~i~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 401 (543)
+...|...+.|+.+.+..|.|.. .+...+..+++|+.|||.+|-++......+...-
T Consensus 176 ~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL------------------ 237 (382)
T KOG1909|consen 176 ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL------------------ 237 (382)
T ss_pred HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh------------------
Confidence 23455666777777777777642 2345567788888888888877633222211100
Q ss_pred CCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCcccccc
Q 040468 402 ASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEI 481 (543)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 481 (543)
..+++|++|++++|-++...
T Consensus 238 ------------------------------------------------------------~s~~~L~El~l~dcll~~~G 257 (382)
T KOG1909|consen 238 ------------------------------------------------------------SSWPHLRELNLGDCLLENEG 257 (382)
T ss_pred ------------------------------------------------------------cccchheeeccccccccccc
Confidence 11567888888888777555
Q ss_pred Chhh-----hcccccCeeeCcCCcccc----ccChhhhccCCCCeeeCCCCcC
Q 040468 482 PTQI-----GYLTKIHALNLSHNNLTG----TIPTTFSNLKQIESLDLSYNLL 525 (543)
Q Consensus 482 ~~~l-----~~l~~L~~L~ls~n~i~~----~~~~~~~~l~~L~~L~l~~n~i 525 (543)
...| ...++|++|.+.+|.|+. .+..++..-|.|+.|+|++|.+
T Consensus 258 a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 258 AIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 4433 337788888888888764 2345566678888888888887
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.15 E-value=7.9e-11 Score=126.31 Aligned_cols=129 Identities=22% Similarity=0.203 Sum_probs=83.1
Q ss_pred ceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcc-cccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEE
Q 040468 22 QLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNL-SGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLD 100 (543)
Q Consensus 22 ~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ 100 (543)
.+++.++.++.+.-. +. -..+++|++|-+.++.. ...++..+|..++.|++|+|++|.-.+.+|..++.+.+||+|+
T Consensus 524 ~~rr~s~~~~~~~~~-~~-~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHI-AG-SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred heeEEEEeccchhhc-cC-CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 567777766666522 21 13445677777777651 2356666667777777777777655566777777777777777
Q ss_pred cCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEeccccc
Q 040468 101 VSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQ 154 (543)
Q Consensus 101 ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~ 154 (543)
++++.+. .+|.++.+ +..|.+|++..+......+.....+++|++|.+....
T Consensus 602 L~~t~I~-~LP~~l~~-Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 602 LSDTGIS-HLPSGLGN-LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccCCCcc-ccchHHHH-HHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 7777777 77777766 6777777777655433344555556777777665543
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.6e-11 Score=115.44 Aligned_cols=160 Identities=22% Similarity=0.126 Sum_probs=70.6
Q ss_pred ceeEEEeeCCCCCCCcc-hhccCCCCCCEEeccCCcccccCC-hhhhhcCCCCcEEEccCCcccccCC-CCCcCCCCCCE
Q 040468 22 QLTSISLSGYIDGGTFP-KFLYHQHDLKNANLSHLNLSGEFP-NWLVENNTNLETLLLANNSLFGSFR-MPIHSHQKLAT 98 (543)
Q Consensus 22 ~L~~L~L~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~ 98 (543)
+|+++.|.++.+....- .....|++++.|+|++|=+....+ ..+...+++|+.|+++.|++..... ..-..+++|+.
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~ 201 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ 201 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence 45566666555542211 233455666666666654442111 1233455666666666655421110 01113455555
Q ss_pred EEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCC
Q 040468 99 LDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNN 178 (543)
Q Consensus 99 L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n 178 (543)
|.++.|.++..-...+...+|+|+.|++..|............++.|+.|||++|.+...-.......++.|+.|+++.+
T Consensus 202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence 55555555433333333335555555555553211222223334455555555555441111111122444555555554
Q ss_pred cCC
Q 040468 179 SLQ 181 (543)
Q Consensus 179 ~~~ 181 (543)
++.
T Consensus 282 gi~ 284 (505)
T KOG3207|consen 282 GIA 284 (505)
T ss_pred Ccc
Confidence 444
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.13 E-value=7.5e-12 Score=114.44 Aligned_cols=133 Identities=23% Similarity=0.208 Sum_probs=77.3
Q ss_pred CCCCcEEEccCCccccc----CcccccCCCCCcEEEccCCcCccCCC-----CCCCcccccEEEcCCCccccc----cCC
Q 040468 239 LSFLVDIIMPNNNLEGL----IPIEFCQLRFLRILDLSNNTIFGTLP-----SCFSPAYIEQVHLSKNKIEGR----LES 305 (543)
Q Consensus 239 ~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~----~~~ 305 (543)
-+.|+.+...+|.+... ....|+.++.|+.+.++.|.|..... .+..+++|+.|++.+|-++.. ...
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 34555555555554332 12234455556666666555542222 122356666666666655432 234
Q ss_pred CCCCCCCccEEEccccccccccCccC-----CCCCCCCEEEccCcccccc----cchhhhCCCCCCEEeCCCCcc
Q 040468 306 VIPDSPNLVTLDLSYNCLHGSIPNRI-----DRLPQLSYLLLANNYIEGE----IPVQLCQLKEVQLIDLSHNNL 371 (543)
Q Consensus 306 ~~~~~~~L~~L~l~~~~i~~~~~~~l-----~~~~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~l~~n~~ 371 (543)
.++.+++|+.|++++|.+......++ ...|+|+.|.+.+|.|+.. +...+...+.|+.|++++|.+
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 45666778888888887765333222 3367888888888888632 334445577888888888887
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=3.2e-11 Score=113.43 Aligned_cols=211 Identities=22% Similarity=0.173 Sum_probs=127.0
Q ss_pred hcCCCCcEEEccCCcccccCC-CCCcCCCCCCEEEcCCCcccc-CCchhhhcCCCCCcEEEcCCCcCccCCch-hhcCCC
Q 040468 67 ENNTNLETLLLANNSLFGSFR-MPIHSHQKLATLDVSNNFFQG-HIPVEIGTYLPGLMEFNLSRNAFNGSIPS-SFADMQ 143 (543)
Q Consensus 67 ~~l~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~ls~~~i~~-~~~~~~~~~l~~L~~L~L~~~~i~~~~~~-~l~~l~ 143 (543)
.++.+|+++.|.++.+..... .-.+.|++++.|||++|-+.. .....+.+.+|+|+.|+++.|++...... .-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 456778888888887632221 346678899999998886652 12335566688999999988877522211 122457
Q ss_pred CCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccC-chhhhcCCCCCEEE
Q 040468 144 MLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEI-PESLSKCRRLGGLY 222 (543)
Q Consensus 144 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~ 222 (543)
+|+.|.++.|+++..-...+...+|+|+.|.+.+|...........-++.|+.|++++|.+.... ......++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 88888888888874444444556888888888888532223333334677888888888766321 13346677777777
Q ss_pred ccCCcCCCcc-ccc-----ccCCCCCcEEEccCCcccccC-cccccCCCCCcEEEccCCcCc
Q 040468 223 LSDNHLSGEI-PRW-----LGNLSFLVDIIMPNNNLEGLI-PIEFCQLRFLRILDLSNNTIF 277 (543)
Q Consensus 223 l~~~~~~~~~-~~~-----l~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~ 277 (543)
++.+.+.+.- |+. ....++|+.|++..|++.++. ...+..+++|+.+.+..+.+.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 7777765321 111 234555666666666554321 112223344444454444443
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.04 E-value=4.3e-10 Score=96.62 Aligned_cols=127 Identities=27% Similarity=0.291 Sum_probs=38.4
Q ss_pred CCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCC
Q 040468 92 SHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLE 171 (543)
Q Consensus 92 ~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~ 171 (543)
+..++++|+|++|.|. .+. .+...+.+|+.|++++|.++.. +.+..+++|+.|++++|.++ .+...+...+++|+
T Consensus 17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence 4445566666666655 332 3332355666666666666522 34555666666666666666 45444433466667
Q ss_pred EEEccCCcCCCc-CcccccCCCCcCEEeCCCCccCccC---chhhhcCCCCCEEEc
Q 040468 172 ILALSNNSLQGH-IFSKKFSLTNLMTLQLDGNNFSGEI---PESLSKCRRLGGLYL 223 (543)
Q Consensus 172 ~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L~l 223 (543)
+|++++|++... ....+..+++|+.|++.+|.+.... ...+..+|+|+.||-
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 777766666532 1234455666667776666655321 123345666666654
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.03 E-value=3.8e-10 Score=96.97 Aligned_cols=128 Identities=25% Similarity=0.235 Sum_probs=39.5
Q ss_pred CCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCc
Q 040468 43 HQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLM 122 (543)
Q Consensus 43 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~ 122 (543)
+..+++.|+|.++.++ .+. .+...+.+|+.|++++|.+... ..+..+++|++|++++|.++ .+...+...+++|+
T Consensus 17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence 4445677777777665 332 2222456677777777776443 24666777777777777776 55444433367777
Q ss_pred EEEcCCCcCccC-CchhhcCCCCCCEEeccccccccc--CchHhhhCCCCCCEEEc
Q 040468 123 EFNLSRNAFNGS-IPSSFADMQMLARLDISYNQLTGE--IPERMATGCFSLEILAL 175 (543)
Q Consensus 123 ~L~L~~~~i~~~-~~~~l~~l~~L~~L~L~~~~~~~~--~~~~~~~~~~~L~~L~l 175 (543)
+|++++|++... ....+..+++|+.|++.+|.+... ....+...+|+|+.||-
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 777777776531 124455667777777777766521 11223334555555543
No 31
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.01 E-value=2.9e-10 Score=80.18 Aligned_cols=61 Identities=44% Similarity=0.579 Sum_probs=56.3
Q ss_pred CceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcC
Q 040468 465 TSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 525 (543)
Q Consensus 465 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i 525 (543)
|+|++|++++|+++...+..|..+++|++|+|++|.++...|.+|..+++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5899999999999955557899999999999999999988889999999999999999986
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.99 E-value=2.9e-11 Score=117.35 Aligned_cols=180 Identities=29% Similarity=0.392 Sum_probs=131.8
Q ss_pred CCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcE
Q 040468 44 QHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLME 123 (543)
Q Consensus 44 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~ 123 (543)
+..-...+++.|++. ++|..+ ..+..|+.+.+..|.+ ..+|.+++++..|++++++.|.+. .+|..++. | -|+.
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~-~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~-l-pLkv 147 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEA-CAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQLS-HLPDGLCD-L-PLKV 147 (722)
T ss_pred ccchhhhhccccccc-cCchHH-HHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccchhh-cCChhhhc-C-ccee
Confidence 344456778888876 777764 5667778888887776 567778888888888888888887 77877775 3 5888
Q ss_pred EEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCc
Q 040468 124 FNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNN 203 (543)
Q Consensus 124 L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~ 203 (543)
|.+++|+++ .+|+.++..+.|..||.+.|.+. .+|..+.. +.+|+.|++..|++.. .+..+..+ .|..||++.|+
T Consensus 148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~-l~slr~l~vrRn~l~~-lp~El~~L-pLi~lDfScNk 222 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGY-LTSLRDLNVRRNHLED-LPEELCSL-PLIRLDFSCNK 222 (722)
T ss_pred EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhh-HHHHHHHHHhhhhhhh-CCHHHhCC-ceeeeecccCc
Confidence 888888887 67777777778888888888877 67766654 7778888888887763 34445544 37778888888
Q ss_pred cCccCchhhhcCCCCCEEEccCCcCCCcccccc
Q 040468 204 FSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWL 236 (543)
Q Consensus 204 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l 236 (543)
+. .+|-.|..+..|++|-+..|.+. ..|..+
T Consensus 223 is-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqI 253 (722)
T KOG0532|consen 223 IS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQI 253 (722)
T ss_pred ee-ecchhhhhhhhheeeeeccCCCC-CChHHH
Confidence 77 66777888888888888888776 334333
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.98 E-value=5.9e-10 Score=111.94 Aligned_cols=104 Identities=36% Similarity=0.476 Sum_probs=62.6
Q ss_pred CCCcEEEccCCcCccCCCCCCCc-ccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEc
Q 040468 264 RFLRILDLSNNTIFGTLPSCFSP-AYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLL 342 (543)
Q Consensus 264 ~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l 342 (543)
..++.+++.++.+....+..... ++|+.|++++|.+.... ..+..+++|+.|++++|++. .++......+.|+.|++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhh-hhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence 45566666666655433333333 26666666666665332 34556677777777777776 44444446667777777
Q ss_pred cCcccccccchhhhCCCCCCEEeCCCCc
Q 040468 343 ANNYIEGEIPVQLCQLKEVQLIDLSHNN 370 (543)
Q Consensus 343 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~ 370 (543)
++|++. .+|........|+++.+++|+
T Consensus 194 s~N~i~-~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 194 SGNKIS-DLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred cCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence 777776 555544455567777777775
No 34
>PLN03150 hypothetical protein; Provisional
Probab=98.95 E-value=1.9e-09 Score=113.41 Aligned_cols=114 Identities=35% Similarity=0.542 Sum_probs=99.8
Q ss_pred CCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccC
Q 040468 336 QLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALN 415 (543)
Q Consensus 336 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~ 415 (543)
.++.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|+.+..
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~---------------------------------- 464 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS---------------------------------- 464 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhC----------------------------------
Confidence 3778999999999889999999999999999999998877766544
Q ss_pred CccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeee
Q 040468 416 ATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALN 495 (543)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ 495 (543)
+++|+.|+|++|++++.+|+.+.++++|+.|+
T Consensus 465 ------------------------------------------------l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 465 ------------------------------------------------ITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred ------------------------------------------------CCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 56899999999999999999999999999999
Q ss_pred CcCCccccccChhhhcc-CCCCeeeCCCCcCcccCCc
Q 040468 496 LSHNNLTGTIPTTFSNL-KQIESLDLSYNLLHGKIPS 531 (543)
Q Consensus 496 ls~n~i~~~~~~~~~~l-~~L~~L~l~~n~i~~~~~~ 531 (543)
|++|.+.+.+|..+... .++..+++.+|+..+..|+
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 99999999999998764 5788999999987765554
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.93 E-value=6.6e-10 Score=119.31 Aligned_cols=132 Identities=24% Similarity=0.304 Sum_probs=97.5
Q ss_pred cCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCc--ccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCC
Q 040468 42 YHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNS--LFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLP 119 (543)
Q Consensus 42 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~--~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~ 119 (543)
......+...+-++.+. .++.. ..+++|++|-+.++. +.......|..++.|+.||+++|.-.+.+|..++. +-
T Consensus 520 ~~~~~~rr~s~~~~~~~-~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~-Li 595 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIE-HIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE-LV 595 (889)
T ss_pred cchhheeEEEEeccchh-hccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh-hh
Confidence 34466677777777664 44443 356678888888885 44445556788889999999887655588888888 78
Q ss_pred CCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCc
Q 040468 120 GLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNS 179 (543)
Q Consensus 120 ~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 179 (543)
+|++|+++++.+. .+|..+.+++.|.+|++..+.....+ .++...+++|++|.+....
T Consensus 596 ~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 596 HLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hhhcccccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccc
Confidence 8999999888887 78888888888999988887765333 4555558888888876654
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.91 E-value=2.4e-09 Score=107.53 Aligned_cols=174 Identities=32% Similarity=0.399 Sum_probs=69.4
Q ss_pred CCCcEEEcCCCcCccCCchhhcCCC-CCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEE
Q 040468 119 PGLMEFNLSRNAFNGSIPSSFADMQ-MLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTL 197 (543)
Q Consensus 119 ~~L~~L~L~~~~i~~~~~~~l~~l~-~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 197 (543)
+.++.|++.++.++ .++.....+. +|+.|++++|.+. .++..+. .+++|+.|+++.|.+... +...+..++|+.|
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~~N~l~~l-~~~~~~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLSFNDLSDL-PKLLSNLSNLNNL 191 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhh-ccccccccccCCchhhhh-hhhhhhhhhhhhe
Confidence 33444444444444 2232333332 4444444444444 3322222 144444444444444321 1111134444444
Q ss_pred eCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCc
Q 040468 198 QLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIF 277 (543)
Q Consensus 198 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 277 (543)
++++|++. .+|........|+++.+++|... ..+..+.....+..+.+.++.+... +..+..++.++.|++++|.+.
T Consensus 192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 192 DLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred eccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cchhccccccceecccccccc
Confidence 44444444 22322222333444444444322 2222334444444444444443321 233444444555555555544
Q ss_pred cCCCCCCCcccccEEEcCCCccc
Q 040468 278 GTLPSCFSPAYIEQVHLSKNKIE 300 (543)
Q Consensus 278 ~~~~~~~~~~~L~~L~l~~~~~~ 300 (543)
.... ......++.|+++++.+.
T Consensus 269 ~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 269 SISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cccc-ccccCccCEEeccCcccc
Confidence 3222 333445555555555444
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.90 E-value=3e-10 Score=101.81 Aligned_cols=129 Identities=22% Similarity=0.148 Sum_probs=67.4
Q ss_pred CCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEc
Q 040468 239 LSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDL 318 (543)
Q Consensus 239 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 318 (543)
...|+++++++|.++.+ .+++.-.|.++.|++++|.+... .....+++|+.|++++|.++.. ..+-.++-+++.|.+
T Consensus 283 Wq~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v-~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTV-QNLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLKL 359 (490)
T ss_pred Hhhhhhccccccchhhh-hhhhhhccceeEEeccccceeee-hhhhhcccceEeecccchhHhh-hhhHhhhcCEeeeeh
Confidence 34455555555555522 34445555566666666655532 2233355566666666655432 223334456666666
Q ss_pred cccccccccCccCCCCCCCCEEEccCcccccc-cchhhhCCCCCCEEeCCCCccc
Q 040468 319 SYNCLHGSIPNRIDRLPQLSYLLLANNYIEGE-IPVQLCQLKEVQLIDLSHNNLS 372 (543)
Q Consensus 319 ~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~l~~n~~~ 372 (543)
++|.+.+ ...++.+-+|..|++++|+|... -...+.+++-|+.+.+.+|++.
T Consensus 360 a~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 360 AQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 6665542 23345555566666666666421 1234555666666666666664
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.89 E-value=8.3e-09 Score=108.56 Aligned_cols=107 Identities=28% Similarity=0.383 Sum_probs=63.5
Q ss_pred eeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcC
Q 040468 23 LTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVS 102 (543)
Q Consensus 23 L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls 102 (543)
++.|+|+++.+.|.+|..+.++++|++|+|++|.+.+.+|..+ ..+++|+.|+|++|++.+.+|..+..+++|++|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHH-hCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 5566666666666666666666666666666666665555543 556666666666666655666666666666666666
Q ss_pred CCccccCCchhhhcCCCCCcEEEcCCCc
Q 040468 103 NNFFQGHIPVEIGTYLPGLMEFNLSRNA 130 (543)
Q Consensus 103 ~~~i~~~~~~~~~~~l~~L~~L~L~~~~ 130 (543)
+|.+.+.+|..+.....++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 6666555555554433344555555443
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.88 E-value=1.4e-10 Score=112.75 Aligned_cols=170 Identities=28% Similarity=0.474 Sum_probs=81.5
Q ss_pred CEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEcc
Q 040468 97 ATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALS 176 (543)
Q Consensus 97 ~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~ 176 (543)
...|++.|++. ++|..+.. +..|+.+.++.|.+. .+|..+.++..|.++|++.|++. ..|..++. + -|+.|-++
T Consensus 78 ~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~-l-pLkvli~s 151 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCD-L-PLKVLIVS 151 (722)
T ss_pred hhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhc-C-cceeEEEe
Confidence 34455555554 55554444 444555555555544 44555555555555555555555 44444432 2 24555555
Q ss_pred CCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccC
Q 040468 177 NNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLI 256 (543)
Q Consensus 177 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 256 (543)
+|+++ ..+..++..+.|..|+.+.|.+. ..|..++.+.+|+.+.+..|.+. .+|..+.. -.|..||++.|++. .+
T Consensus 152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis-~i 226 (722)
T KOG0532|consen 152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS-YL 226 (722)
T ss_pred cCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-ec
Confidence 55544 23344444455555555555544 33444455555555555555444 23333332 22445555555544 23
Q ss_pred cccccCCCCCcEEEccCCcCc
Q 040468 257 PIEFCQLRFLRILDLSNNTIF 277 (543)
Q Consensus 257 ~~~l~~l~~L~~L~l~~~~~~ 277 (543)
|..|..|..|++|-+.+|.+.
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred chhhhhhhhheeeeeccCCCC
Confidence 444555555555555555443
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.7e-10 Score=103.33 Aligned_cols=180 Identities=22% Similarity=0.181 Sum_probs=86.1
Q ss_pred ceeEEEeeCCCCCCC-cchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCccccc--CCCCCcCCCCCCE
Q 040468 22 QLTSISLSGYIDGGT-FPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGS--FRMPIHSHQKLAT 98 (543)
Q Consensus 22 ~L~~L~L~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~--~~~~~~~~~~L~~ 98 (543)
+|+++||++..++.. +-..+..|.+|+.|.++|+++++.+...+ +.-.+|+.|+++.+.-... ...-+.+|+.|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH-hccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 366666666666533 33334566666666666666665555554 4556666666666642111 1112456666666
Q ss_pred EEcCCCccccCCchh-hhcCCCCCcEEEcCCCcCc---cCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEE
Q 040468 99 LDVSNNFFQGHIPVE-IGTYLPGLMEFNLSRNAFN---GSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILA 174 (543)
Q Consensus 99 L~ls~~~i~~~~~~~-~~~~l~~L~~L~L~~~~i~---~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~ 174 (543)
|++++|....+.... +...-++|..|+++++.-. ..+..-...+++|..|||+.+.-........+..++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 666666544322111 1111235666666654311 112222334556666666554322111111222355555555
Q ss_pred ccCCc-CCCcCcccccCCCCcCEEeCCCC
Q 040468 175 LSNNS-LQGHIFSKKFSLTNLMTLQLDGN 202 (543)
Q Consensus 175 l~~n~-~~~~~~~~l~~l~~L~~L~l~~~ 202 (543)
++.|- +.-...-.+...|.|.+|++.++
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 55552 11111223334455555555443
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.76 E-value=8.2e-09 Score=72.76 Aligned_cols=61 Identities=41% Similarity=0.572 Sum_probs=37.5
Q ss_pred CCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcc
Q 040468 311 PNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNL 371 (543)
Q Consensus 311 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~ 371 (543)
|+|++|++++|+++...+.+|..+++|+.|++++|++....+..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4566666666666644445666666666666666666655555666666666666666653
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=6e-10 Score=99.82 Aligned_cols=182 Identities=21% Similarity=0.145 Sum_probs=96.4
Q ss_pred CCcEEEccCCccccc-CCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCc-CccC-CchhhcCCCCCCE
Q 040468 71 NLETLLLANNSLFGS-FRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNA-FNGS-IPSSFADMQMLAR 147 (543)
Q Consensus 71 ~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~-i~~~-~~~~l~~l~~L~~ 147 (543)
.|++|+|++..++.. .-..++.|.+|+.|.+.++.+.+.+...+++ -.+|+.|+++.+. +++. ....+.+++.|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 366666666555322 1222445666666666666665555555555 3556666666542 2211 1123445566666
Q ss_pred EecccccccccCch-HhhhCCCCCCEEEccCCcCC---CcCcccccCCCCcCEEeCCCCcc-CccCchhhhcCCCCCEEE
Q 040468 148 LDISYNQLTGEIPE-RMATGCFSLEILALSNNSLQ---GHIFSKKFSLTNLMTLQLDGNNF-SGEIPESLSKCRRLGGLY 222 (543)
Q Consensus 148 L~L~~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~---~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~l~~~~~L~~L~ 222 (543)
|+++.|........ .+.+--++|..|++++++-. .....-...+|+|..||++++.. +......+.+++.|+++.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 66666654422211 12222345666666665321 11111223467777777777653 222334566778888888
Q ss_pred ccCCcCC-CcccccccCCCCCcEEEccCCccc
Q 040468 223 LSDNHLS-GEIPRWLGNLSFLVDIIMPNNNLE 253 (543)
Q Consensus 223 l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~ 253 (543)
++.|..- ....-.+...|.|.+|++.++.-.
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEeccccCc
Confidence 8877542 111223567888888888776443
No 43
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.59 E-value=1.8e-09 Score=101.41 Aligned_cols=278 Identities=18% Similarity=0.111 Sum_probs=126.9
Q ss_pred ceeEEEeeCCCCCCC--cchhccCCCCCCEEeccCCc-ccccCChhhhhcCCCCcEEEccCCc-ccccCCC-CCcCCCCC
Q 040468 22 QLTSISLSGYIDGGT--FPKFLYHQHDLKNANLSHLN-LSGEFPNWLVENNTNLETLLLANNS-LFGSFRM-PIHSHQKL 96 (543)
Q Consensus 22 ~L~~L~L~~~~~~~~--~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~L~~~~-~~~~~~~-~~~~~~~L 96 (543)
.|+.|++.|+.-.+. +-.....|+++++|++.+|. +++..-..+...|++|+.|++..|. +++.... -...|++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 466777776655543 22334566777777776663 4444444445667777777776643 2322222 12356677
Q ss_pred CEEEcCCCc-cccCCchhhhcCCCCCcEEEcCCCcCcc--CCchhhcCCCCCCEEeccccc-ccccCchHhhhCCCCCCE
Q 040468 97 ATLDVSNNF-FQGHIPVEIGTYLPGLMEFNLSRNAFNG--SIPSSFADMQMLARLDISYNQ-LTGEIPERMATGCFSLEI 172 (543)
Q Consensus 97 ~~L~ls~~~-i~~~~~~~~~~~l~~L~~L~L~~~~i~~--~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~L~~ 172 (543)
++|++++|. +++.....+.+.++.++.+.+.+|.-.+ .+-..-..+..+.++++.++. +++.-...+...+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 777777664 3433444455555556666555542110 000111223344455544443 221112223334555566
Q ss_pred EEccCCc-CCCcCcccc-cCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccc-cCCCCCcEEEccC
Q 040468 173 LALSNNS-LQGHIFSKK-FSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWL-GNLSFLVDIIMPN 249 (543)
Q Consensus 173 L~l~~n~-~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~ 249 (543)
+..+++. +++.....+ ...++|+.+.+.+++. ++......+ .+++.|+.+++..
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~-----------------------fsd~~ft~l~rn~~~Le~l~~e~ 355 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQ-----------------------FSDRGFTMLGRNCPHLERLDLEE 355 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccch-----------------------hhhhhhhhhhcCChhhhhhcccc
Confidence 6555543 221111111 2234455555544431 111111111 2344555555554
Q ss_pred Cccccc--CcccccCCCCCcEEEccCCcCc-cCCCCC-----CCcccccEEEcCCCcccc-ccCCCCCCCCCccEEEccc
Q 040468 250 NNLEGL--IPIEFCQLRFLRILDLSNNTIF-GTLPSC-----FSPAYIEQVHLSKNKIEG-RLESVIPDSPNLVTLDLSY 320 (543)
Q Consensus 250 ~~~~~~--~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-----~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~ 320 (543)
+..... +...-..++.|+.+.+++|... +..... -....++.+.++++.... ..-..+..+++|+.+++.+
T Consensus 356 ~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 356 CGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELID 435 (483)
T ss_pred cceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeec
Confidence 432211 1111124555555555555422 110000 113456666666665432 2333455667777777777
Q ss_pred cc
Q 040468 321 NC 322 (543)
Q Consensus 321 ~~ 322 (543)
++
T Consensus 436 ~q 437 (483)
T KOG4341|consen 436 CQ 437 (483)
T ss_pred hh
Confidence 64
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.56 E-value=8e-09 Score=103.90 Aligned_cols=197 Identities=26% Similarity=0.251 Sum_probs=88.0
Q ss_pred CCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCccc-ccccCCCCCcEE
Q 040468 167 CFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIP-RWLGNLSFLVDI 245 (543)
Q Consensus 167 ~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L 245 (543)
+++|++|++++|.|+.. ..+..++.|+.|++.+|.+... ..+..++.|+.+++++|.+...-+ . ...+..++.+
T Consensus 117 ~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l 191 (414)
T KOG0531|consen 117 LVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEEL 191 (414)
T ss_pred hhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHH
Confidence 44444444444444321 1223333344444444444422 122234455555555554442211 1 2444555555
Q ss_pred EccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcc--cccEEEcCCCccccccCCCCCCCCCccEEEcccccc
Q 040468 246 IMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPA--YIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCL 323 (543)
Q Consensus 246 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i 323 (543)
.+.+|.+... ..+..+..+..+++..+.+.. ........ +|+.+++.++.+.... ..+..+..+..+++.++.+
T Consensus 192 ~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~-~~~l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 192 DLGGNSIREI--EGLDLLKKLVLLSLLDNKISK-LEGLNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRI 267 (414)
T ss_pred hccCCchhcc--cchHHHHHHHHhhccccccee-ccCcccchhHHHHHHhcccCcccccc-ccccccccccccchhhccc
Confidence 5555554432 122222333333444444442 11211122 2566666666654321 3344556666666666665
Q ss_pred ccccCccCCCCCCCCEEEccCcccccc---cchh-hhCCCCCCEEeCCCCccccc
Q 040468 324 HGSIPNRIDRLPQLSYLLLANNYIEGE---IPVQ-LCQLKEVQLIDLSHNNLSGH 374 (543)
Q Consensus 324 ~~~~~~~l~~~~~L~~L~l~~n~i~~~---~~~~-l~~l~~L~~L~l~~n~~~~~ 374 (543)
... ..+...+.+..+....+++... .... ....+.+..+.+..|+..+.
T Consensus 268 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 268 SNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred ccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccc
Confidence 522 2233444555555555554421 1111 33456666666766666543
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.53 E-value=8e-09 Score=103.90 Aligned_cols=65 Identities=23% Similarity=0.238 Sum_probs=41.9
Q ss_pred cCceeEEEcccCccccccChhhhcccccCeeeCcCCccccc---cChh-hhccCCCCeeeCCCCcCcccCC
Q 040468 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGT---IPTT-FSNLKQIESLDLSYNLLHGKIP 530 (543)
Q Consensus 464 ~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~---~~~~-~~~l~~L~~L~l~~n~i~~~~~ 530 (543)
++++..|++++|++. .-..+.....+..+....|.+... .... ....+.++.+.+.+|++....+
T Consensus 254 ~~~l~~l~~~~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 254 LKNLPVLDLSSNRIS--NLEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred cccccccchhhcccc--ccccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 557777777777777 233456666677777777776521 1111 4556788888888888876554
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.46 E-value=3.4e-09 Score=106.02 Aligned_cols=129 Identities=29% Similarity=0.313 Sum_probs=101.8
Q ss_pred CCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCC
Q 040468 311 PNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDE 390 (543)
Q Consensus 311 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~ 390 (543)
-.|...+.+.|.+. .+...+.-++.++.|+|+.|++++. +.+..|++|+.|||+.|.+. .+|- +..
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~----l~~------ 229 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQ----LSM------ 229 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccc----cch------
Confidence 46778888999988 6778888899999999999999843 36789999999999999986 2221 000
Q ss_pred CCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEE
Q 040468 391 PVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGI 470 (543)
Q Consensus 391 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 470 (543)
.+ + .|..|
T Consensus 230 ---------------------------------------------------------~g--------------c-~L~~L 237 (1096)
T KOG1859|consen 230 ---------------------------------------------------------VG--------------C-KLQLL 237 (1096)
T ss_pred ---------------------------------------------------------hh--------------h-hheee
Confidence 00 2 48899
Q ss_pred EcccCccccccChhhhcccccCeeeCcCCcccccc-ChhhhccCCCCeeeCCCCcCcc
Q 040468 471 DLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTI-PTTFSNLKQIESLDLSYNLLHG 527 (543)
Q Consensus 471 ~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~-~~~~~~l~~L~~L~l~~n~i~~ 527 (543)
.|++|.++ ...++.++.+|+.||+++|-|.+.. .+-+..|.+|..|+|.||++-+
T Consensus 238 ~lrnN~l~--tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 238 NLRNNALT--TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred eecccHHH--hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 99999998 4566899999999999999987532 3446778899999999999863
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.38 E-value=5.6e-08 Score=86.30 Aligned_cols=86 Identities=23% Similarity=0.259 Sum_probs=38.6
Q ss_pred CCCCEEecccccccccCchHh----hhCCCCCCEEEccCCcCCCcC-----cccccCCCCcCEEeCCCCccCcc----Cc
Q 040468 143 QMLARLDISYNQLTGEIPERM----ATGCFSLEILALSNNSLQGHI-----FSKKFSLTNLMTLQLDGNNFSGE----IP 209 (543)
Q Consensus 143 ~~L~~L~L~~~~~~~~~~~~~----~~~~~~L~~L~l~~n~~~~~~-----~~~l~~l~~L~~L~l~~~~~~~~----~~ 209 (543)
|.|+..+...|++. ..+... +..-..|+.+.+..|.|.... ...++.+.+|+.|++.+|.++.. ..
T Consensus 157 p~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La 235 (388)
T COG5238 157 PKLEVVICGRNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA 235 (388)
T ss_pred CCceEEEeccchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence 45555555555554 333221 121234555555555443211 11223345555666655554421 22
Q ss_pred hhhhcCCCCCEEEccCCcCC
Q 040468 210 ESLSKCRRLGGLYLSDNHLS 229 (543)
Q Consensus 210 ~~l~~~~~L~~L~l~~~~~~ 229 (543)
..++.++.|+.|.+.+|-+.
T Consensus 236 ~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 236 DALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred HHhcccchhhhccccchhhc
Confidence 33444455555555555544
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.31 E-value=1.7e-08 Score=101.25 Aligned_cols=128 Identities=27% Similarity=0.248 Sum_probs=88.3
Q ss_pred CCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEE
Q 040468 46 DLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFN 125 (543)
Q Consensus 46 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~ 125 (543)
.|.+.+++.|.+. .+..+ ..-++.|+.|+|++|++++.. .+..+++|++|||++|.+. .+|..--..| +|+.|+
T Consensus 165 ~L~~a~fsyN~L~-~mD~S-Lqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDES-LQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hHhhhhcchhhHH-hHHHH-HHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeee
Confidence 3444555555543 22222 244678899999999886553 5788899999999999887 6665443334 489999
Q ss_pred cCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCC
Q 040468 126 LSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQ 181 (543)
Q Consensus 126 L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 181 (543)
+++|.++. ...+.++++|+.||+++|-+.+.-.-.....+..|+.|.|.+|.+.
T Consensus 239 lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 239 LRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 99988873 3577888889999999887764433333333667888888888765
No 49
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.30 E-value=3e-08 Score=93.35 Aligned_cols=133 Identities=17% Similarity=0.049 Sum_probs=66.4
Q ss_pred CCCCcEEEccCCccccc-C-cccccCCCCCcEEEccCCcC-ccCCCCCC--CcccccEEEcCCCccccc--cCCCCCCCC
Q 040468 239 LSFLVDIIMPNNNLEGL-I-PIEFCQLRFLRILDLSNNTI-FGTLPSCF--SPAYIEQVHLSKNKIEGR--LESVIPDSP 311 (543)
Q Consensus 239 ~~~L~~L~l~~~~~~~~-~-~~~l~~l~~L~~L~l~~~~~-~~~~~~~~--~~~~L~~L~l~~~~~~~~--~~~~~~~~~ 311 (543)
+..|+.++.+++...+. . ..--.++++|+.+.+..|.- ++...... .++.|+.+++.++..... ....-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 44555555555433211 0 11123455666666666542 11111111 156666666666543211 223344567
Q ss_pred CccEEEcccccc-cccc----CccCCCCCCCCEEEccCcccc-cccchhhhCCCCCCEEeCCCCcc
Q 040468 312 NLVTLDLSYNCL-HGSI----PNRIDRLPQLSYLLLANNYIE-GEIPVQLCQLKEVQLIDLSHNNL 371 (543)
Q Consensus 312 ~L~~L~l~~~~i-~~~~----~~~l~~~~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~l~~n~~ 371 (543)
.|+.+.++.|.. ++.. ...-..+..|+.+.+++++.+ +...+.+..+++|+.+++.++.-
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 777777776632 2221 122244556777777777543 33444556677777777777643
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.27 E-value=2.8e-07 Score=96.87 Aligned_cols=84 Identities=18% Similarity=0.194 Sum_probs=38.5
Q ss_pred CCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCcccc-CCchhhhcCCCCC
Q 040468 43 HQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQG-HIPVEIGTYLPGL 121 (543)
Q Consensus 43 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~-~~~~~~~~~l~~L 121 (543)
.+|.|++|.+++-.+...--..+..++++|..||+++++++.. .+++++++|+.|.+.+-.+.. ..-..++. +++|
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~-L~~L 222 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFN-LKKL 222 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhc-ccCC
Confidence 3455555555554443222223344455555555555554332 344555555555555443331 11223444 5555
Q ss_pred cEEEcCCC
Q 040468 122 MEFNLSRN 129 (543)
Q Consensus 122 ~~L~L~~~ 129 (543)
+.||++..
T Consensus 223 ~vLDIS~~ 230 (699)
T KOG3665|consen 223 RVLDISRD 230 (699)
T ss_pred Ceeecccc
Confidence 55555543
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=2.1e-07 Score=83.76 Aligned_cols=82 Identities=20% Similarity=0.263 Sum_probs=50.0
Q ss_pred cccccEEEcCCCccccc-cCCCCCCCCCccEEEccccccccc-cCccCCCCCCCCEEEccCcccccccch------hhhC
Q 040468 286 PAYIEQVHLSKNKIEGR-LESVIPDSPNLVTLDLSYNCLHGS-IPNRIDRLPQLSYLLLANNYIEGEIPV------QLCQ 357 (543)
Q Consensus 286 ~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~i~~~-~~~~l~~~~~L~~L~l~~n~i~~~~~~------~l~~ 357 (543)
++++..+.+..|.+... ....+..+|.+.-|++..++|.+. ..+.+.+++.|+.|.+.++++.+.+.. .+++
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR 277 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR 277 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence 45566666666655332 233445556666777777777642 235677788888888888877643321 2456
Q ss_pred CCCCCEEeCC
Q 040468 358 LKEVQLIDLS 367 (543)
Q Consensus 358 l~~L~~L~l~ 367 (543)
+++++.|+=+
T Consensus 278 L~~v~vLNGs 287 (418)
T KOG2982|consen 278 LTKVQVLNGS 287 (418)
T ss_pred ccceEEecCc
Confidence 7777776543
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.19 E-value=1.2e-06 Score=56.39 Aligned_cols=36 Identities=33% Similarity=0.642 Sum_probs=18.8
Q ss_pred ceeEEEcccCccccccChhhhcccccCeeeCcCCccc
Q 040468 466 SMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLT 502 (543)
Q Consensus 466 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~ 502 (543)
+|++|++++|+++ .+|+.+++|++|++|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 44444555555555555555555
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.10 E-value=2.7e-06 Score=54.72 Aligned_cols=38 Identities=37% Similarity=0.642 Sum_probs=32.6
Q ss_pred cccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcc
Q 040468 489 TKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG 527 (543)
Q Consensus 489 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~ 527 (543)
++|++|++++|+|+ .+|..|.++++|+.|++++|+|+.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 57999999999999 566679999999999999999983
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.01 E-value=4.2e-06 Score=88.15 Aligned_cols=83 Identities=16% Similarity=0.211 Sum_probs=33.5
Q ss_pred CCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccc-cCchHhhhCCCCCC
Q 040468 93 HQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTG-EIPERMATGCFSLE 171 (543)
Q Consensus 93 ~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~~~~~~~~L~ 171 (543)
+|.|+.|.+++-.+...--..+...+++|..||++++.++.. .+++++++|+.|.+.+-.+.. .....+|. +++|+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~-L~~L~ 223 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFN-LKKLR 223 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhc-ccCCC
Confidence 444555555443332111112223344455555555444421 344444444444444433331 11123333 44555
Q ss_pred EEEccCC
Q 040468 172 ILALSNN 178 (543)
Q Consensus 172 ~L~l~~n 178 (543)
.||+|..
T Consensus 224 vLDIS~~ 230 (699)
T KOG3665|consen 224 VLDISRD 230 (699)
T ss_pred eeecccc
Confidence 5555443
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=2.1e-06 Score=77.48 Aligned_cols=212 Identities=21% Similarity=0.173 Sum_probs=126.1
Q ss_pred CCCCEEecccccccccCc-hHhhhCCCCCCEEEccCCcCCC--cCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCC
Q 040468 143 QMLARLDISYNQLTGEIP-ERMATGCFSLEILALSNNSLQG--HIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLG 219 (543)
Q Consensus 143 ~~L~~L~L~~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 219 (543)
..++.+.+.++.+..... ..+.+.++.++++++.+|.+++ ....-+.++|.|+.|+++.|.+...+...-....+|+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 344555666665542222 2334456678888888887763 2233345678888888888776643322112455777
Q ss_pred EEEccCCcCCCccccc-ccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCc
Q 040468 220 GLYLSDNHLSGEIPRW-LGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNK 298 (543)
Q Consensus 220 ~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 298 (543)
.+.+.+..+....... +..+|.+++++++.|.+. .+++..+.+.. ..+.++++++.+|.
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r--------------q~n~Dd~c~e~------~s~~v~tlh~~~c~ 184 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR--------------QLNLDDNCIED------WSTEVLTLHQLPCL 184 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh--------------hhccccccccc------cchhhhhhhcCCcH
Confidence 7777776665333322 344566666666555332 22222221111 12355666666654
Q ss_pred cccc--cCCCCCCCCCccEEEccccccccc-cCccCCCCCCCCEEEccCccccc-ccchhhhCCCCCCEEeCCCCccccc
Q 040468 299 IEGR--LESVIPDSPNLVTLDLSYNCLHGS-IPNRIDRLPQLSYLLLANNYIEG-EIPVQLCQLKEVQLIDLSHNNLSGH 374 (543)
Q Consensus 299 ~~~~--~~~~~~~~~~L~~L~l~~~~i~~~-~~~~l~~~~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~n~~~~~ 374 (543)
..-. ....-.-+|++..+.+..|++... .......+|.+..|+|+.++|.+ ..-+++.++++|.-|.++++++...
T Consensus 185 ~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 185 EQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred HHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 3211 111223458999999999988753 23456677888899999999974 2235688999999999999998743
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.90 E-value=1.2e-06 Score=69.77 Aligned_cols=83 Identities=25% Similarity=0.325 Sum_probs=36.5
Q ss_pred CCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEec
Q 040468 71 NLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDI 150 (543)
Q Consensus 71 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L 150 (543)
+|...+|++|.+.+..+.....++.++.+++++|.+. .+|..++. ++.|+.|+++.|++. ..|..+..+.++-.|+.
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aa-m~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAA-MPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhh-hHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 3444444444442222222223334445555555444 44444333 445555555555444 33444444444444444
Q ss_pred cccccc
Q 040468 151 SYNQLT 156 (543)
Q Consensus 151 ~~~~~~ 156 (543)
.+|.+.
T Consensus 131 ~~na~~ 136 (177)
T KOG4579|consen 131 PENARA 136 (177)
T ss_pred CCCccc
Confidence 444444
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.87 E-value=5e-06 Score=74.19 Aligned_cols=39 Identities=28% Similarity=0.402 Sum_probs=16.9
Q ss_pred CCCCCEEEccCCcCCCcCcc----cccCCCCcCEEeCCCCccC
Q 040468 167 CFSLEILALSNNSLQGHIFS----KKFSLTNLMTLQLDGNNFS 205 (543)
Q Consensus 167 ~~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~l~~~~~~ 205 (543)
||+|+..+++.|-+....+. .++....|+.|.+.+|.+.
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 44555555554443322221 2233344555555555443
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.87 E-value=5e-05 Score=73.81 Aligned_cols=34 Identities=12% Similarity=0.217 Sum_probs=25.3
Q ss_pred cCceeEEEcccCccccccChhhhcccccCeeeCcCCc
Q 040468 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNN 500 (543)
Q Consensus 464 ~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~ 500 (543)
+++|++|++++|... ..|..+. .+|+.|+++.+.
T Consensus 155 PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 155 SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred CCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence 578888998888876 5565555 578888887764
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.84 E-value=1.2e-06 Score=69.75 Aligned_cols=107 Identities=22% Similarity=0.181 Sum_probs=87.3
Q ss_pred ceeEEEeeCCCCCCC--cchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEE
Q 040468 22 QLTSISLSGYIDGGT--FPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATL 99 (543)
Q Consensus 22 ~L~~L~L~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L 99 (543)
.+-.++|+.|++.-. .+..+.+..+|+..+|++|.+. .+|..+...++.++.|++.+|.+ ..+|..++.++.|+.|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~nei-sdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEI-SDVPEELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhh-hhchHHHhhhHHhhhc
Confidence 355678888877622 3444566778888999999997 78888877888999999999998 4556669999999999
Q ss_pred EcCCCccccCCchhhhcCCCCCcEEEcCCCcCc
Q 040468 100 DVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFN 132 (543)
Q Consensus 100 ~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~ 132 (543)
+++.|.+. ..|.-++. +.++.+|+..+|...
T Consensus 106 Nl~~N~l~-~~p~vi~~-L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAP-LIKLDMLDSPENARA 136 (177)
T ss_pred ccccCccc-cchHHHHH-HHhHHHhcCCCCccc
Confidence 99999998 78888888 889999999888776
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.72 E-value=6.6e-05 Score=64.34 Aligned_cols=83 Identities=25% Similarity=0.247 Sum_probs=37.4
Q ss_pred CCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCc-CcccccCCCCcCEE
Q 040468 119 PGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGH-IFSKKFSLTNLMTL 197 (543)
Q Consensus 119 ~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L 197 (543)
.+...+||++|.+. ....|..+++|++|.+++|.++ .+...+...+++|+.|.+.+|.+... ....+..+|+|++|
T Consensus 42 d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchh--hcccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 34445555555443 1234444455555555555555 44444444445555555555543321 11222334444444
Q ss_pred eCCCCcc
Q 040468 198 QLDGNNF 204 (543)
Q Consensus 198 ~l~~~~~ 204 (543)
.+-+|.+
T Consensus 119 tll~Npv 125 (233)
T KOG1644|consen 119 TLLGNPV 125 (233)
T ss_pred eecCCch
Confidence 4444443
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.65 E-value=0.00012 Score=60.46 Aligned_cols=84 Identities=17% Similarity=0.201 Sum_probs=31.2
Q ss_pred hhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCC
Q 040468 65 LVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQM 144 (543)
Q Consensus 65 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~ 144 (543)
.|.++.+|+.+.+.. .+......+|.++.+|+.+.+.++ +. .++...+..++.++.+.+.. .+.......|..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccc
Confidence 344455555555543 233334444555555555555443 33 44444444444555555543 222122233444455
Q ss_pred CCEEeccc
Q 040468 145 LARLDISY 152 (543)
Q Consensus 145 L~~L~L~~ 152 (543)
|+.+++..
T Consensus 83 l~~i~~~~ 90 (129)
T PF13306_consen 83 LKNIDIPS 90 (129)
T ss_dssp ECEEEETT
T ss_pred ccccccCc
Confidence 55555543
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.65 E-value=6.4e-05 Score=64.42 Aligned_cols=86 Identities=17% Similarity=0.206 Sum_probs=72.9
Q ss_pred CCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCcccccc-ChhhhccCCCCeeeC
Q 040468 442 MGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTI-PTTFSNLKQIESLDL 520 (543)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~-~~~~~~l~~L~~L~l 520 (543)
...++.+.++..++.+......+++|.+|.+++|+|+...|.--..+++|+.|.+++|+|.... .+.+..+|+|+.|.+
T Consensus 41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 4467788888888999888888999999999999999666666677889999999999987532 345788999999999
Q ss_pred CCCcCcc
Q 040468 521 SYNLLHG 527 (543)
Q Consensus 521 ~~n~i~~ 527 (543)
-+|+++.
T Consensus 121 l~Npv~~ 127 (233)
T KOG1644|consen 121 LGNPVEH 127 (233)
T ss_pred cCCchhc
Confidence 9999974
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.51 E-value=0.00056 Score=56.44 Aligned_cols=122 Identities=16% Similarity=0.202 Sum_probs=46.6
Q ss_pred cccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCC-cccccEEEcCCCccccccCCCCCCCCCc
Q 040468 235 WLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFS-PAYIEQVHLSKNKIEGRLESVIPDSPNL 313 (543)
Q Consensus 235 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L 313 (543)
.|..+.+|+.+.+.. .+.......|..+.+|+.+.+.++ +.......+. +++++.+.+.+ .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344555555555543 233344445555555666665543 3333333333 34566666644 3333444455566666
Q ss_pred cEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCC
Q 040468 314 VTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQ 362 (543)
Q Consensus 314 ~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~ 362 (543)
+.+++..+ +.......+.++ .|+.+.+.+ .+.......|.++++|+
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 66666554 443444556665 666666655 33323445566665553
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.49 E-value=0.00083 Score=65.51 Aligned_cols=135 Identities=17% Similarity=0.182 Sum_probs=63.3
Q ss_pred cCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCC-ccccCCchhhhcCCCC
Q 040468 42 YHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNN-FFQGHIPVEIGTYLPG 120 (543)
Q Consensus 42 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~-~i~~~~~~~~~~~l~~ 120 (543)
..++++++|++++|.++ .+|. + ..+|++|.+.+|.-...+|..+ .++|++|++++| .+. .+| ++
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP~-L---P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP-------~s 113 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLPV-L---PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP-------ES 113 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccCC-C---CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc-------cc
Confidence 34566677777766554 4442 1 3456667776654333444333 246677777666 332 222 34
Q ss_pred CcEEEcCCCcCccCCchhhcCC-CCCCEEeccccccc--ccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEE
Q 040468 121 LMEFNLSRNAFNGSIPSSFADM-QMLARLDISYNQLT--GEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTL 197 (543)
Q Consensus 121 L~~L~L~~~~i~~~~~~~l~~l-~~L~~L~L~~~~~~--~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 197 (543)
|+.|++..+... .+..+ +.|+.|.+.++... ..++. .-.++|++|.+++|.... .+..+ ..+|+.|
T Consensus 114 Le~L~L~~n~~~-----~L~~LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i~-LP~~L--P~SLk~L 182 (426)
T PRK15386 114 VRSLEIKGSATD-----SIKNVPNGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNII-LPEKL--PESLQSI 182 (426)
T ss_pred cceEEeCCCCCc-----ccccCcchHhheecccccccccccccc---ccCCcccEEEecCCCccc-Ccccc--cccCcEE
Confidence 556666544322 11122 23455555332211 01111 012457777776665432 22222 2456666
Q ss_pred eCCCC
Q 040468 198 QLDGN 202 (543)
Q Consensus 198 ~l~~~ 202 (543)
.+..+
T Consensus 183 ~ls~n 187 (426)
T PRK15386 183 TLHIE 187 (426)
T ss_pred Eeccc
Confidence 66544
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.40 E-value=1.8e-05 Score=82.00 Aligned_cols=191 Identities=23% Similarity=0.121 Sum_probs=116.3
Q ss_pred cCCCCCCEEeccCCc-ccccCChhhhhcCCCCcEEEccCC-ccccc----CCCCCcCCCCCCEEEcCCCc-cccCCchhh
Q 040468 42 YHQHDLKNANLSHLN-LSGEFPNWLVENNTNLETLLLANN-SLFGS----FRMPIHSHQKLATLDVSNNF-FQGHIPVEI 114 (543)
Q Consensus 42 ~~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~L~~~-~~~~~----~~~~~~~~~~L~~L~ls~~~-i~~~~~~~~ 114 (543)
..++.|+.+.+.++. +.......+...+++|+.|+++++ ..... .......+++|+.|+++++. +++..-..+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 457899999998884 433223455678899999999873 21111 11234567899999999988 776666677
Q ss_pred hcCCCCCcEEEcCCCc-CccCC-chhhcCCCCCCEEeccccccc-ccCchHhhhCCCCCCEEEccCCcCCCcCcccccCC
Q 040468 115 GTYLPGLMEFNLSRNA-FNGSI-PSSFADMQMLARLDISYNQLT-GEIPERMATGCFSLEILALSNNSLQGHIFSKKFSL 191 (543)
Q Consensus 115 ~~~l~~L~~L~L~~~~-i~~~~-~~~l~~l~~L~~L~L~~~~~~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l 191 (543)
+..|++|++|.+.+|. ++... .....+++.|++|+++++... +.....+...+++++.+.+..... +
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c 334 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------C 334 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------C
Confidence 7778999999988887 55332 234456788999999988654 122223344477777765443321 3
Q ss_pred CCcCEEeCCCCccC---ccCchhhhcCCCCCEEEccCCcCCCcc-cccccCCCCC
Q 040468 192 TNLMTLQLDGNNFS---GEIPESLSKCRRLGGLYLSDNHLSGEI-PRWLGNLSFL 242 (543)
Q Consensus 192 ~~L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L 242 (543)
+.++.+.+.+.... .........+++++.+.+..+...... ...+..|+.+
T Consensus 335 ~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 335 PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 33444333332211 122233466777888877777644322 2445566666
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.36 E-value=1.9e-05 Score=81.80 Aligned_cols=236 Identities=22% Similarity=0.096 Sum_probs=109.6
Q ss_pred CCCCCEEEcCCCc-cccCCchhhhcCCCCCcEEEcCCC-cCccCC----chhhcCCCCCCEEeccccc-ccccCchHhhh
Q 040468 93 HQKLATLDVSNNF-FQGHIPVEIGTYLPGLMEFNLSRN-AFNGSI----PSSFADMQMLARLDISYNQ-LTGEIPERMAT 165 (543)
Q Consensus 93 ~~~L~~L~ls~~~-i~~~~~~~~~~~l~~L~~L~L~~~-~i~~~~----~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~ 165 (543)
++.|+.+.+.++. +.+..-..+...+++|+.|+++++ ...... ......+++|+.|+++.+. +++..-..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 5666666666553 221112233344666777766652 111011 1223344666777776666 44344444444
Q ss_pred CCCCCCEEEccCCc-CCCcCcccc-cCCCCcCEEeCCCCccCcc--CchhhhcCCCCCEEEccCCcCCCcccccccCCCC
Q 040468 166 GCFSLEILALSNNS-LQGHIFSKK-FSLTNLMTLQLDGNNFSGE--IPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSF 241 (543)
Q Consensus 166 ~~~~L~~L~l~~n~-~~~~~~~~l-~~l~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 241 (543)
.+++|+.|.+.+|. +++.....+ ..++.|++|+++++..... .......+++++.+.+..... ++.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~~ 336 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CPS 336 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------Ccc
Confidence 56777777766665 443332222 3456677777776654211 112233455555544332211 333
Q ss_pred CcEEEccCCccc---ccCcccccCCCCCcEEEccCCcCccCCC--CCCCcccccEEEcCCCccccccCCCCCCCCCccEE
Q 040468 242 LVDIIMPNNNLE---GLIPIEFCQLRFLRILDLSNNTIFGTLP--SCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTL 316 (543)
Q Consensus 242 L~~L~l~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 316 (543)
++.+.+..+... .........+++++.+.+..+....... ..-.++.|+ ..+. .....+..++.|
T Consensus 337 l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~---------~~~~~~~~l~~L 406 (482)
T KOG1947|consen 337 LTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLE---------LRLCRSDSLRVL 406 (482)
T ss_pred HHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHH---------HHhccCCccceE
Confidence 343433332221 1222334566777777777665332221 111133331 1111 111122237778
Q ss_pred Eccccccc-cccCccCCC-CCCCCEEEccCcccc
Q 040468 317 DLSYNCLH-GSIPNRIDR-LPQLSYLLLANNYIE 348 (543)
Q Consensus 317 ~l~~~~i~-~~~~~~l~~-~~~L~~L~l~~n~i~ 348 (543)
+++.+... ......... +..++.+++.++...
T Consensus 407 ~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 407 NLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred ecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 88777543 222222222 566777777777543
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.08 E-value=0.00022 Score=63.92 Aligned_cols=103 Identities=25% Similarity=0.246 Sum_probs=46.6
Q ss_pred CCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCC--ccccCCchhhhcCCCCCcEEEcCCCcCccC-CchhhcCCCCCC
Q 040468 70 TNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNN--FFQGHIPVEIGTYLPGLMEFNLSRNAFNGS-IPSSFADMQMLA 146 (543)
Q Consensus 70 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~--~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~-~~~~l~~l~~L~ 146 (543)
..|+.|++.+..++.. ..+-.+++|++|.++.| ++.+.++..+-. +++|++|++++|++... -...+..+++|.
T Consensus 43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~-~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEK-APNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhh-CCceeEEeecCCccccccccchhhhhcchh
Confidence 3444444444444222 12334455555555555 333333322222 45666666666655410 011233444555
Q ss_pred EEecccccccc--cCchHhhhCCCCCCEEEc
Q 040468 147 RLDISYNQLTG--EIPERMATGCFSLEILAL 175 (543)
Q Consensus 147 ~L~L~~~~~~~--~~~~~~~~~~~~L~~L~l 175 (543)
.|++.+|..+. ..-..+|.-+++|++|+-
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 56665554441 122334444566666653
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.00 E-value=0.00036 Score=62.52 Aligned_cols=127 Identities=18% Similarity=0.207 Sum_probs=69.0
Q ss_pred ceeEEEeeCCCCC-CCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCC--cccccCCCCCcCCCCCCE
Q 040468 22 QLTSISLSGYIDG-GTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANN--SLFGSFRMPIHSHQKLAT 98 (543)
Q Consensus 22 ~L~~L~L~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~--~~~~~~~~~~~~~~~L~~ 98 (543)
+++.+.+..|.-. +.+......+..|..+++.+..++. +.. +-.+++|++|.++.| ++...+......+++|++
T Consensus 19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt-~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~ 95 (260)
T KOG2739|consen 19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTT-LTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKV 95 (260)
T ss_pred hhhhhhcchhhhcCCCcccccccccchhhhhhhccceee-ccc--CCCcchhhhhcccCCcccccccceehhhhCCceeE
Confidence 4555555544322 2233444556666666666665542 111 234667777777777 554444444455677777
Q ss_pred EEcCCCcccc-CCchhhhcCCCCCcEEEcCCCcCccCC---chhhcCCCCCCEEeccc
Q 040468 99 LDVSNNFFQG-HIPVEIGTYLPGLMEFNLSRNAFNGSI---PSSFADMQMLARLDISY 152 (543)
Q Consensus 99 L~ls~~~i~~-~~~~~~~~~l~~L~~L~L~~~~i~~~~---~~~l~~l~~L~~L~L~~ 152 (543)
+++++|++.. .....+.+ +++|..|++.+|..+... -..|.-+++|++||-..
T Consensus 96 l~ls~Nki~~lstl~pl~~-l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 96 LNLSGNKIKDLSTLRPLKE-LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred EeecCCccccccccchhhh-hcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 7777777662 11111222 566777777777665311 12344456666665443
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=8.3e-05 Score=66.87 Aligned_cols=100 Identities=22% Similarity=0.225 Sum_probs=51.0
Q ss_pred CCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEE
Q 040468 45 HDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEF 124 (543)
Q Consensus 45 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L 124 (543)
.+.+.|+++||.+++ | .+...++.|++|.|+-|+|+...| +..|++|++|.|..|.|.+.-.....+.+++|+.|
T Consensus 19 ~~vkKLNcwg~~L~D-I--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDD-I--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCccH-H--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 345556666665542 2 224556666666666666544333 55666666666666655521122223335666666
Q ss_pred EcCCCcCccCCc-----hhhcCCCCCCEEe
Q 040468 125 NLSRNAFNGSIP-----SSFADMQMLARLD 149 (543)
Q Consensus 125 ~L~~~~i~~~~~-----~~l~~l~~L~~L~ 149 (543)
-|..|+-.+..+ ..+.-+++|++||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 665555433222 2244456666554
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.00021 Score=64.29 Aligned_cols=100 Identities=20% Similarity=0.135 Sum_probs=61.0
Q ss_pred CCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEE
Q 040468 94 QKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEIL 173 (543)
Q Consensus 94 ~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L 173 (543)
.+.+.|++-+|.+. ..++.+.++.|+.|.|+-|.|+.. ..+..+++|++|+|..|.+.+.-......++|+|+.|
T Consensus 19 ~~vkKLNcwg~~L~---DIsic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLD---DISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCcc---HHHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34555666666655 334455567777777777776632 3466667777777777777633333455567777777
Q ss_pred EccCCcCCCcC-----cccccCCCCcCEEe
Q 040468 174 ALSNNSLQGHI-----FSKKFSLTNLMTLQ 198 (543)
Q Consensus 174 ~l~~n~~~~~~-----~~~l~~l~~L~~L~ 198 (543)
.|..|...+.. ...+..+|+|++||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 77776543322 22345577888776
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.91 E-value=0.0042 Score=33.03 Aligned_cols=19 Identities=42% Similarity=0.573 Sum_probs=9.3
Q ss_pred eeEEEcccCccccccChhhh
Q 040468 467 MFGIDLSCNKLTGEIPTQIG 486 (543)
Q Consensus 467 L~~L~ls~n~l~~~~~~~l~ 486 (543)
|++|||++|+++ .+|+.|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 445555555555 4444443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.74 E-value=0.0043 Score=32.99 Aligned_cols=20 Identities=55% Similarity=0.869 Sum_probs=11.0
Q ss_pred ccCeeeCcCCccccccChhhh
Q 040468 490 KIHALNLSHNNLTGTIPTTFS 510 (543)
Q Consensus 490 ~L~~L~ls~n~i~~~~~~~~~ 510 (543)
+|++|+|++|+++ .+|.+|+
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 3556666666666 4444444
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.37 E-value=0.023 Score=27.93 Aligned_cols=13 Identities=46% Similarity=0.623 Sum_probs=5.1
Q ss_pred ceeEEEcccCccc
Q 040468 466 SMFGIDLSCNKLT 478 (543)
Q Consensus 466 ~L~~L~ls~n~l~ 478 (543)
+|++|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4455555555544
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.95 E-value=0.0038 Score=54.96 Aligned_cols=76 Identities=18% Similarity=0.222 Sum_probs=62.5
Q ss_pred cCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcccCCccccccCcCCcC
Q 040468 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVF 542 (543)
Q Consensus 464 ~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l 542 (543)
....+.||++.|++. .....|+-++.|..|+++.|.+. ..|+.+..+..++.++..+|..+ ..|.++...++++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 567888999999888 66777888888889999988888 88888888888888888888887 667778888777654
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.86 E-value=0.032 Score=27.43 Aligned_cols=13 Identities=46% Similarity=0.744 Sum_probs=5.1
Q ss_pred ccCeeeCcCCccc
Q 040468 490 KIHALNLSHNNLT 502 (543)
Q Consensus 490 ~L~~L~ls~n~i~ 502 (543)
+|++|+|++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555544
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.77 E-value=0.00022 Score=72.06 Aligned_cols=61 Identities=30% Similarity=0.397 Sum_probs=33.4
Q ss_pred eeEEEcccCcccccc----Chhhhcc-cccCeeeCcCCccccc----cChhhhccCCCCeeeCCCCcCcc
Q 040468 467 MFGIDLSCNKLTGEI----PTQIGYL-TKIHALNLSHNNLTGT----IPTTFSNLKQIESLDLSYNLLHG 527 (543)
Q Consensus 467 L~~L~ls~n~l~~~~----~~~l~~l-~~L~~L~ls~n~i~~~----~~~~~~~l~~L~~L~l~~n~i~~ 527 (543)
+.+|++.+|++.+.. ...+... ..+++++++.|.|++. ..+.+..+++++.+.+++|++..
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 444666666555331 2333444 5556666666666542 33445555666666666666643
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.49 E-value=0.0078 Score=52.01 Aligned_cols=83 Identities=12% Similarity=0.013 Sum_probs=44.6
Q ss_pred ceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCc-ccccCChhhhhcCCCCcEEEccCCc-ccccCCCCCcCCCCCCEE
Q 040468 22 QLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLN-LSGEFPNWLVENNTNLETLLLANNS-LFGSFRMPIHSHQKLATL 99 (543)
Q Consensus 22 ~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~L~~L 99 (543)
.++.++-+++.|..+--+.+..++.++.|.+.+|. +.+...+.+..-.++|+.|++++|. |++.--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 56777777776665544555666666666666663 3333333333334566666666553 333333334455555555
Q ss_pred EcCCC
Q 040468 100 DVSNN 104 (543)
Q Consensus 100 ~ls~~ 104 (543)
.+.+-
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 55543
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.26 E-value=0.00087 Score=67.83 Aligned_cols=89 Identities=28% Similarity=0.293 Sum_probs=44.1
Q ss_pred CCCCCEEecccccccccCc---hHhhhCCCC-CCEEEccCCcCCCcC----cccccCC-CCcCEEeCCCCccCccCc---
Q 040468 142 MQMLARLDISYNQLTGEIP---ERMATGCFS-LEILALSNNSLQGHI----FSKKFSL-TNLMTLQLDGNNFSGEIP--- 209 (543)
Q Consensus 142 l~~L~~L~L~~~~~~~~~~---~~~~~~~~~-L~~L~l~~n~~~~~~----~~~l~~l-~~L~~L~l~~~~~~~~~~--- 209 (543)
..++++|.+.++.++...- ..+....++ +..+++..|.+.+.. ...+..+ +.++.+++..|.++....
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 3455556666555442111 111112222 444566666554321 2222333 456677777776664332
Q ss_pred -hhhhcCCCCCEEEccCCcCCC
Q 040468 210 -ESLSKCRRLGGLYLSDNHLSG 230 (543)
Q Consensus 210 -~~l~~~~~L~~L~l~~~~~~~ 230 (543)
..+..++.++.+.+..|.+..
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHhhhHHHHHhhcccCcccc
Confidence 334455677777777776653
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.83 E-value=0.016 Score=50.17 Aligned_cols=84 Identities=21% Similarity=0.123 Sum_probs=52.1
Q ss_pred ccccEEEcCCCccccccCCCCCCCCCccEEEcccccccc-ccCccC-CCCCCCCEEEccCc-ccccccchhhhCCCCCCE
Q 040468 287 AYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHG-SIPNRI-DRLPQLSYLLLANN-YIEGEIPVQLCQLKEVQL 363 (543)
Q Consensus 287 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~l-~~~~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~ 363 (543)
-.++.++-+++.+..+....+..++.++.|.+.+|.--+ .-.+.+ +-.++|+.|++++| +|++.....+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 346666666666666655666667777777777764221 111111 13467888888877 577666667777777777
Q ss_pred EeCCCCc
Q 040468 364 IDLSHNN 370 (543)
Q Consensus 364 L~l~~n~ 370 (543)
|.+.+=+
T Consensus 181 L~l~~l~ 187 (221)
T KOG3864|consen 181 LHLYDLP 187 (221)
T ss_pred HHhcCch
Confidence 7776544
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.08 E-value=0.044 Score=29.77 Aligned_cols=13 Identities=38% Similarity=0.718 Sum_probs=4.4
Q ss_pred ccCeeeCcCCccc
Q 040468 490 KIHALNLSHNNLT 502 (543)
Q Consensus 490 ~L~~L~ls~n~i~ 502 (543)
+|++|+|++|.|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3344444444433
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.05 E-value=0.066 Score=29.04 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=15.2
Q ss_pred cCceeEEEcccCccccccChhh
Q 040468 464 LTSMFGIDLSCNKLTGEIPTQI 485 (543)
Q Consensus 464 ~~~L~~L~ls~n~l~~~~~~~l 485 (543)
+++|++|+|++|++++..+..+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 3689999999999996655544
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.71 E-value=0.23 Score=27.43 Aligned_cols=13 Identities=38% Similarity=0.713 Sum_probs=5.6
Q ss_pred ccCeeeCcCCccc
Q 040468 490 KIHALNLSHNNLT 502 (543)
Q Consensus 490 ~L~~L~ls~n~i~ 502 (543)
+|+.|+|++|.|.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.71 E-value=0.23 Score=27.43 Aligned_cols=13 Identities=38% Similarity=0.713 Sum_probs=5.6
Q ss_pred ccCeeeCcCCccc
Q 040468 490 KIHALNLSHNNLT 502 (543)
Q Consensus 490 ~L~~L~ls~n~i~ 502 (543)
+|+.|+|++|.|.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.28 E-value=0.28 Score=27.13 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=17.2
Q ss_pred cCCCCeeeCCCCcCcccCCccc
Q 040468 512 LKQIESLDLSYNLLHGKIPSQL 533 (543)
Q Consensus 512 l~~L~~L~l~~n~i~~~~~~~~ 533 (543)
+++|+.|++++|.|....++.|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4789999999999995544444
No 85
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.28 E-value=0.28 Score=27.13 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=17.2
Q ss_pred cCCCCeeeCCCCcCcccCCccc
Q 040468 512 LKQIESLDLSYNLLHGKIPSQL 533 (543)
Q Consensus 512 l~~L~~L~l~~n~i~~~~~~~~ 533 (543)
+++|+.|++++|.|....++.|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4789999999999995544444
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=77.10 E-value=1.6 Score=24.14 Aligned_cols=13 Identities=38% Similarity=0.511 Sum_probs=6.5
Q ss_pred ceeEEEcccCccc
Q 040468 466 SMFGIDLSCNKLT 478 (543)
Q Consensus 466 ~L~~L~ls~n~l~ 478 (543)
+|++|+.++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4445555555554
No 87
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=75.73 E-value=0.15 Score=45.26 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=57.0
Q ss_pred cCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCc
Q 040468 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 526 (543)
Q Consensus 464 ~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~ 526 (543)
++.+..||++.|.+. ..|..+.....+..+++..|.+. ..|.++...++++.++..+|++.
T Consensus 64 ~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 64 LTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 678889999999999 89999999999999999999998 88999999999999999999976
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=75.58 E-value=2.4 Score=23.51 Aligned_cols=15 Identities=47% Similarity=0.660 Sum_probs=10.6
Q ss_pred cCCCCeeeCCCCcCc
Q 040468 512 LKQIESLDLSYNLLH 526 (543)
Q Consensus 512 l~~L~~L~l~~n~i~ 526 (543)
+.+|+.|++++|+|.
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356777777777775
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=73.91 E-value=1.4 Score=24.83 Aligned_cols=12 Identities=42% Similarity=0.681 Sum_probs=5.0
Q ss_pred cCeeeCcCCccc
Q 040468 491 IHALNLSHNNLT 502 (543)
Q Consensus 491 L~~L~ls~n~i~ 502 (543)
|++|+|++|.+.
T Consensus 4 L~~LdL~~N~i~ 15 (28)
T smart00368 4 LRELDLSNNKLG 15 (28)
T ss_pred cCEEECCCCCCC
Confidence 444444444443
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=70.23 E-value=20 Score=35.90 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=18.3
Q ss_pred CCCccEEEcccccccc----ccCccCCCCCCCCEEEccCccc
Q 040468 310 SPNLVTLDLSYNCLHG----SIPNRIDRLPQLSYLLLANNYI 347 (543)
Q Consensus 310 ~~~L~~L~l~~~~i~~----~~~~~l~~~~~L~~L~l~~n~i 347 (543)
-+.+..|++++|...+ .+|..+....+++.+..+.|..
T Consensus 439 tqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 439 TQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred CcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 3556666666665443 2233333344455554444443
No 91
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=57.21 E-value=7.5 Score=21.29 Aligned_cols=15 Identities=27% Similarity=0.275 Sum_probs=12.2
Q ss_pred cCCCCeeeCCCCc-Cc
Q 040468 512 LKQIESLDLSYNL-LH 526 (543)
Q Consensus 512 l~~L~~L~l~~n~-i~ 526 (543)
+++|+.|+|++|+ |+
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4789999999996 55
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=50.55 E-value=8.5 Score=39.18 Aligned_cols=65 Identities=28% Similarity=0.151 Sum_probs=31.6
Q ss_pred hcCCCCcEEEccCCcccccC--CCCCcCCCCCCEEEcCCC--ccccCCchhhhcCCCCCcEEEcCCCcCc
Q 040468 67 ENNTNLETLLLANNSLFGSF--RMPIHSHQKLATLDVSNN--FFQGHIPVEIGTYLPGLMEFNLSRNAFN 132 (543)
Q Consensus 67 ~~l~~L~~L~L~~~~~~~~~--~~~~~~~~~L~~L~ls~~--~i~~~~~~~~~~~l~~L~~L~L~~~~i~ 132 (543)
.+.+.+..++|++|++-... ..--...|+|+.|+|++| .+. ..+..-.-+...|++|-+.+|++.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~-~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS-SESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc-chhhhhhhcCCCHHHeeecCCccc
Confidence 34556666666666652211 111123466777777766 332 111111111345677777777665
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=41.23 E-value=16 Score=37.27 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=14.7
Q ss_pred CCCCCEEEcCCCcccc-CCchhhhcCCCCCcEEEcCCC
Q 040468 93 HQKLATLDVSNNFFQG-HIPVEIGTYLPGLMEFNLSRN 129 (543)
Q Consensus 93 ~~~L~~L~ls~~~i~~-~~~~~~~~~l~~L~~L~L~~~ 129 (543)
.+.+..+.+++|++.. .....+...-|+|..|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 3444444444444331 011122333344445555444
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.05 E-value=51 Score=40.93 Aligned_cols=33 Identities=24% Similarity=0.271 Sum_probs=27.1
Q ss_pred EcccCccccccChhhhcccccCeeeCcCCcccc
Q 040468 471 DLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTG 503 (543)
Q Consensus 471 ~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~ 503 (543)
||++|+|+...+..|..+++|++|+|++|++..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 688999994444668889999999999999875
Done!