Query 040468
Match_columns 543
No_of_seqs 264 out of 4017
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 13:57:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040468.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040468hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 7.4E-53 2.5E-57 456.7 35.8 502 18-543 197-710 (768)
2 3rgz_A Protein brassinosteroid 100.0 2E-50 6.8E-55 437.6 37.7 476 17-532 219-723 (768)
3 3t6q_A CD180 antigen; protein- 100.0 6.1E-47 2.1E-51 401.4 40.6 454 22-542 34-552 (606)
4 3t6q_A CD180 antigen; protein- 100.0 1.3E-45 4.4E-50 391.2 38.9 451 15-530 51-564 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 2.8E-44 9.5E-49 386.0 46.0 518 21-542 25-614 (680)
6 1ziw_A TOLL-like receptor 3; i 100.0 1.5E-44 5.1E-49 388.1 37.2 505 17-535 45-633 (680)
7 3vq2_A TLR4, TOLL-like recepto 100.0 4.6E-45 1.6E-49 386.9 32.4 449 21-542 32-550 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 4.3E-45 1.5E-49 387.1 31.6 441 16-530 51-562 (606)
9 2z63_A TOLL-like receptor 4, v 100.0 2E-44 7E-49 379.4 33.1 439 22-531 29-536 (570)
10 3j0a_A TOLL-like receptor 5; m 100.0 1E-42 3.4E-47 381.1 37.5 490 21-537 24-550 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 1.7E-43 5.9E-48 372.3 30.3 419 16-506 47-535 (570)
12 4eco_A Uncharacterized protein 100.0 5.5E-44 1.9E-48 378.5 23.3 414 21-528 81-602 (636)
13 4ecn_A Leucine-rich repeat pro 100.0 1.1E-42 3.7E-47 374.4 27.1 419 21-533 323-847 (876)
14 3j0a_A TOLL-like receptor 5; m 100.0 7.8E-41 2.7E-45 366.2 34.3 489 24-542 7-531 (844)
15 2z7x_B TOLL-like receptor 1, v 100.0 2.4E-41 8.3E-46 351.5 27.0 428 25-529 4-484 (520)
16 2z81_A CD282 antigen, TOLL-lik 100.0 2E-41 6.9E-46 354.7 26.4 463 21-530 26-514 (549)
17 4eco_A Uncharacterized protein 100.0 8.5E-41 2.9E-45 354.0 25.2 404 45-542 81-592 (636)
18 4ecn_A Leucine-rich repeat pro 100.0 1.6E-39 5.6E-44 349.7 27.9 402 45-542 323-832 (876)
19 2z81_A CD282 antigen, TOLL-lik 100.0 1.4E-39 4.7E-44 340.8 26.2 468 26-543 10-503 (549)
20 3v47_A TOLL-like receptor 5B a 100.0 7.7E-39 2.6E-43 327.1 28.3 390 24-530 13-412 (455)
21 2z7x_B TOLL-like receptor 1, v 100.0 4.2E-39 1.4E-43 334.7 22.9 416 48-543 3-474 (520)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.6E-38 8.8E-43 331.5 27.8 431 22-530 32-514 (562)
23 4g8a_A TOLL-like receptor 4; l 100.0 6.7E-37 2.3E-41 326.3 35.6 420 22-528 53-582 (635)
24 3v47_A TOLL-like receptor 5B a 100.0 5.4E-37 1.8E-41 313.5 31.3 372 21-506 30-412 (455)
25 4g8a_A TOLL-like receptor 4; l 100.0 8.9E-36 3E-40 317.7 35.4 452 25-543 35-573 (635)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.4E-36 4.7E-41 318.4 26.8 424 42-543 28-503 (562)
27 1jl5_A Outer protein YOPM; leu 100.0 7.1E-36 2.4E-40 302.7 26.4 378 21-534 11-419 (454)
28 1o6v_A Internalin A; bacterial 100.0 1.1E-34 3.6E-39 296.7 31.3 301 43-372 44-344 (466)
29 1o6v_A Internalin A; bacterial 100.0 4.2E-34 1.4E-38 292.3 33.8 320 22-372 47-366 (466)
30 2id5_A Lingo-1, leucine rich r 100.0 1.1E-33 3.8E-38 290.5 28.7 295 73-372 14-309 (477)
31 1jl5_A Outer protein YOPM; leu 100.0 9.9E-34 3.4E-38 287.0 27.7 359 43-536 9-382 (454)
32 3bz5_A Internalin-J, INLJ; leu 100.0 9.4E-34 3.2E-38 287.4 24.5 210 40-277 37-246 (457)
33 2id5_A Lingo-1, leucine rich r 100.0 4.5E-33 1.5E-37 286.0 27.6 319 24-348 14-333 (477)
34 3bz5_A Internalin-J, INLJ; leu 100.0 1.7E-32 5.8E-37 278.2 27.7 306 19-373 40-353 (457)
35 3o6n_A APL1; leucine-rich repe 100.0 3.6E-32 1.2E-36 271.7 26.4 311 92-527 43-353 (390)
36 4fmz_A Internalin; leucine ric 100.0 1.3E-31 4.5E-36 263.4 29.5 307 90-526 40-346 (347)
37 3o6n_A APL1; leucine-rich repe 100.0 3.6E-32 1.2E-36 271.6 25.7 266 68-372 43-308 (390)
38 4fmz_A Internalin; leucine ric 100.0 1.8E-31 6E-36 262.4 28.7 307 41-372 40-346 (347)
39 3oja_B Anopheles plasmodium-re 100.0 4.2E-31 1.4E-35 278.2 26.7 311 92-527 49-359 (597)
40 1z7x_W Ribonuclease inhibitor; 100.0 1.1E-34 3.7E-39 296.9 -1.5 391 46-532 4-446 (461)
41 3oja_B Anopheles plasmodium-re 100.0 7.1E-31 2.4E-35 276.5 26.0 289 68-372 49-337 (597)
42 1z7x_W Ribonuclease inhibitor; 100.0 7.6E-34 2.6E-38 290.7 1.9 357 94-528 3-413 (461)
43 2ft3_A Biglycan; proteoglycan, 100.0 5.9E-29 2E-33 242.6 25.8 242 95-372 34-277 (332)
44 2ft3_A Biglycan; proteoglycan, 100.0 5.2E-29 1.8E-33 243.0 24.6 288 144-524 34-331 (332)
45 1xku_A Decorin; proteoglycan, 100.0 1.5E-28 5E-33 239.7 27.1 243 120-372 32-276 (330)
46 1xku_A Decorin; proteoglycan, 100.0 3.7E-28 1.3E-32 236.8 28.2 289 46-370 32-330 (330)
47 1ogq_A PGIP-2, polygalacturona 100.0 2E-29 7E-34 243.2 17.1 254 192-530 50-308 (313)
48 1ogq_A PGIP-2, polygalacturona 100.0 1E-28 3.4E-33 238.4 19.6 249 21-275 50-302 (313)
49 3ogk_B Coronatine-insensitive 100.0 5.2E-31 1.8E-35 278.4 0.3 377 68-528 110-528 (592)
50 3ogk_B Coronatine-insensitive 100.0 3.4E-30 1.2E-34 272.2 5.2 417 22-522 74-547 (592)
51 2p1m_B Transport inhibitor res 100.0 1.4E-30 4.7E-35 275.3 -3.6 299 67-368 102-441 (594)
52 2z80_A TOLL-like receptor 2, v 99.9 4.4E-27 1.5E-31 231.4 18.3 279 144-530 32-318 (353)
53 2z66_A Variable lymphocyte rec 99.9 3.1E-26 1.1E-30 220.7 19.9 281 171-537 10-298 (306)
54 2z66_A Variable lymphocyte rec 99.9 1.8E-25 6.2E-30 215.3 23.1 262 169-512 29-297 (306)
55 1ozn_A Reticulon 4 receptor; N 99.9 2.5E-25 8.6E-30 212.0 21.5 223 146-372 14-238 (285)
56 2z80_A TOLL-like receptor 2, v 99.9 8.3E-26 2.8E-30 222.3 17.5 282 42-374 28-316 (353)
57 3o53_A Protein LRIM1, AGAP0063 99.9 8.6E-27 2.9E-31 225.5 10.2 189 173-372 15-204 (317)
58 3zyj_A Leucine-rich repeat-con 99.9 7.1E-25 2.4E-29 222.2 24.5 226 217-526 65-292 (440)
59 4fcg_A Uncharacterized protein 99.9 1.8E-25 6E-30 216.9 18.5 236 191-527 80-315 (328)
60 2p1m_B Transport inhibitor res 99.9 2.5E-28 8.5E-33 258.0 -2.7 418 21-524 66-542 (594)
61 3zyi_A Leucine-rich repeat-con 99.9 2.2E-24 7.5E-29 219.4 24.4 246 47-300 56-303 (452)
62 4fcg_A Uncharacterized protein 99.9 2.1E-25 7.4E-30 216.3 16.2 224 45-276 81-313 (328)
63 1ozn_A Reticulon 4 receptor; N 99.9 1.1E-24 3.9E-29 207.4 20.9 163 216-378 32-196 (285)
64 3zyj_A Leucine-rich repeat-con 99.9 3.2E-24 1.1E-28 217.4 25.0 249 95-372 44-292 (440)
65 3g06_A SSPH2 (leucine-rich rep 99.9 3.8E-24 1.3E-28 223.2 24.8 270 119-514 40-309 (622)
66 3zyi_A Leucine-rich repeat-con 99.9 4.6E-24 1.6E-28 217.0 24.2 249 95-372 55-303 (452)
67 3o53_A Protein LRIM1, AGAP0063 99.9 6.9E-26 2.4E-30 219.1 7.8 245 113-371 28-274 (317)
68 3g06_A SSPH2 (leucine-rich rep 99.9 2.1E-23 7.1E-28 217.6 26.7 241 94-379 40-280 (622)
69 3oja_A Leucine-rich immune mol 99.9 2.9E-25 1E-29 227.0 11.6 147 217-372 35-182 (487)
70 1wwl_A Monocyte differentiatio 99.9 9.1E-26 3.1E-30 217.7 6.1 246 191-527 42-310 (312)
71 3oja_A Leucine-rich immune mol 99.9 2.2E-24 7.6E-29 220.5 10.3 234 193-521 35-270 (487)
72 2z62_A TOLL-like receptor 4, v 99.9 1.3E-22 4.4E-27 192.2 20.2 132 241-372 29-162 (276)
73 1wwl_A Monocyte differentiatio 99.9 1.6E-24 5.5E-29 209.0 6.1 129 69-203 42-184 (312)
74 2o6q_A Variable lymphocyte rec 99.9 1.4E-21 4.9E-26 184.2 21.9 153 217-372 17-170 (270)
75 2z62_A TOLL-like receptor 4, v 99.9 9E-22 3.1E-26 186.4 19.8 208 120-348 29-237 (276)
76 3rfs_A Internalin B, repeat mo 99.9 3.6E-22 1.2E-26 188.5 15.2 133 213-372 38-170 (272)
77 2o6q_A Variable lymphocyte rec 99.9 5.6E-21 1.9E-25 180.1 22.4 199 23-227 18-216 (270)
78 1p9a_G Platelet glycoprotein I 99.9 3.2E-21 1.1E-25 183.4 19.1 156 212-372 6-161 (290)
79 4glp_A Monocyte differentiatio 99.9 1.3E-21 4.5E-26 188.5 12.7 226 217-527 65-308 (310)
80 3rfs_A Internalin B, repeat mo 99.9 1.1E-20 3.7E-25 178.3 17.1 188 188-384 59-247 (272)
81 1p9a_G Platelet glycoprotein I 99.9 2.9E-20 1E-24 176.7 19.5 195 23-227 12-206 (290)
82 2ast_B S-phase kinase-associat 99.8 5.9E-22 2E-26 193.5 7.5 254 46-308 48-314 (336)
83 3m19_A Variable lymphocyte rec 99.8 3.8E-20 1.3E-24 172.4 18.9 105 266-372 16-120 (251)
84 2ca6_A RAN GTPase-activating p 99.8 1.3E-22 4.4E-27 202.0 1.4 168 186-372 26-229 (386)
85 3goz_A Leucine-rich repeat-con 99.8 3.5E-21 1.2E-25 189.7 11.5 253 25-277 2-297 (362)
86 2ast_B S-phase kinase-associat 99.8 7E-21 2.4E-25 185.9 12.4 253 23-284 49-313 (336)
87 4glp_A Monocyte differentiatio 99.8 3.1E-20 1.1E-24 178.8 15.3 226 45-276 64-306 (310)
88 2ca6_A RAN GTPase-activating p 99.8 1.4E-21 4.7E-26 194.6 5.6 243 37-280 24-319 (386)
89 3goz_A Leucine-rich repeat-con 99.8 8.7E-21 3E-25 186.9 11.0 263 49-328 2-301 (362)
90 2xwt_C Thyrotropin receptor; s 99.8 4.9E-20 1.7E-24 170.4 15.3 196 241-524 32-237 (239)
91 2xwt_C Thyrotropin receptor; s 99.8 3.3E-19 1.1E-23 164.8 15.9 196 120-369 32-236 (239)
92 1h6u_A Internalin H; cell adhe 99.8 6.7E-19 2.3E-23 169.1 18.5 192 43-253 39-230 (308)
93 1h6u_A Internalin H; cell adhe 99.8 1.3E-18 4.5E-23 167.0 19.7 207 51-278 25-231 (308)
94 3m19_A Variable lymphocyte rec 99.8 1.1E-18 3.8E-23 162.4 18.6 177 23-205 16-192 (251)
95 2o6s_A Variable lymphocyte rec 99.8 7.6E-19 2.6E-23 158.7 14.0 109 264-372 28-137 (208)
96 4ay9_X Follicle-stimulating ho 99.8 2.8E-18 9.6E-23 168.0 15.7 203 48-256 12-218 (350)
97 4ay9_X Follicle-stimulating ho 99.8 8.3E-18 2.8E-22 164.7 18.4 243 97-370 12-257 (350)
98 3cvr_A Invasion plasmid antige 99.8 5.1E-18 1.7E-22 174.8 15.2 197 216-514 59-255 (571)
99 2o6s_A Variable lymphocyte rec 99.8 1E-17 3.6E-22 151.1 15.5 131 45-178 28-158 (208)
100 2xot_A Amphoterin-induced prot 99.7 1.2E-17 4.2E-22 164.1 15.7 127 243-372 21-149 (361)
101 2v9t_B SLIT homolog 2 protein 99.7 1.9E-17 6.6E-22 150.5 15.1 104 267-372 14-117 (220)
102 1h6t_A Internalin B; cell adhe 99.7 9E-18 3.1E-22 159.7 13.1 127 237-372 43-169 (291)
103 3e6j_A Variable lymphocyte rec 99.7 3.1E-17 1.1E-21 150.2 15.9 155 289-529 21-175 (229)
104 2v70_A SLIT-2, SLIT homolog 2 99.7 1.7E-17 6E-22 150.8 13.7 110 267-378 14-124 (220)
105 4ezg_A Putative uncharacterize 99.7 1.6E-17 5.3E-22 148.5 10.9 151 286-526 43-194 (197)
106 3cvr_A Invasion plasmid antige 99.7 1.1E-16 3.7E-21 164.9 18.2 134 193-348 60-193 (571)
107 1m9s_A Internalin B; cell inva 99.7 5.9E-17 2E-21 168.8 14.4 145 218-373 23-167 (605)
108 2v9t_B SLIT homolog 2 protein 99.7 2E-16 6.8E-21 143.8 15.0 151 24-180 14-164 (220)
109 1h6t_A Internalin B; cell adhe 99.7 4.8E-16 1.6E-20 147.8 17.4 171 67-253 43-213 (291)
110 2v70_A SLIT-2, SLIT homolog 2 99.7 4.2E-16 1.4E-20 141.6 15.6 152 24-180 14-165 (220)
111 2xot_A Amphoterin-induced prot 99.7 1.5E-16 5.2E-21 156.3 13.4 175 24-204 21-201 (361)
112 4ezg_A Putative uncharacterize 99.7 4.6E-16 1.6E-20 138.9 15.2 152 43-205 42-194 (197)
113 1m9s_A Internalin B; cell inva 99.7 1.3E-15 4.3E-20 158.8 18.7 171 68-254 41-211 (605)
114 3sb4_A Hypothetical leucine ri 99.7 1E-16 3.5E-21 155.5 9.3 101 263-365 225-327 (329)
115 3e6j_A Variable lymphocyte rec 99.7 1.7E-15 6E-20 138.5 16.9 131 45-179 40-170 (229)
116 1xeu_A Internalin C; cellular 99.7 4.9E-17 1.7E-21 152.1 5.5 123 240-372 19-141 (263)
117 4fs7_A Uncharacterized protein 99.7 6.4E-15 2.2E-19 146.6 20.7 335 82-542 59-393 (394)
118 3sb4_A Hypothetical leucine ri 99.6 6.1E-16 2.1E-20 150.0 10.6 285 69-383 24-321 (329)
119 1dce_A Protein (RAB geranylger 99.6 2.6E-18 8.9E-23 178.0 -7.4 63 464-528 485-548 (567)
120 1w8a_A SLIT protein; signaling 99.6 2.1E-15 7.2E-20 133.8 12.2 159 290-535 11-171 (192)
121 2ell_A Acidic leucine-rich nuc 99.6 9E-16 3.1E-20 133.3 9.6 135 311-531 24-164 (168)
122 4fdw_A Leucine rich hypothetic 99.6 5.7E-14 1.9E-18 139.1 22.8 218 145-372 159-383 (401)
123 4fs7_A Uncharacterized protein 99.6 6.2E-14 2.1E-18 139.4 22.3 312 39-369 65-376 (394)
124 4fdw_A Leucine rich hypothetic 99.6 5.4E-14 1.8E-18 139.2 21.1 191 167-367 112-308 (401)
125 1xeu_A Internalin C; cellular 99.6 3.1E-15 1.1E-19 139.8 11.1 166 194-373 21-186 (263)
126 2je0_A Acidic leucine-rich nuc 99.6 2.4E-15 8.1E-20 127.7 8.9 59 464-522 87-149 (149)
127 2wfh_A SLIT homolog 2 protein 99.6 1.4E-14 4.9E-19 128.4 13.0 79 290-372 13-91 (193)
128 2ell_A Acidic leucine-rich nuc 99.5 9.9E-15 3.4E-19 126.6 9.0 133 44-181 23-160 (168)
129 1w8a_A SLIT protein; signaling 99.5 3.5E-14 1.2E-18 125.9 12.7 134 24-161 11-144 (192)
130 4b8c_D Glucose-repressible alc 99.5 2E-15 7E-20 161.3 5.4 73 304-379 217-289 (727)
131 2o6r_A Variable lymphocyte rec 99.5 4.1E-14 1.4E-18 123.9 12.2 81 289-372 9-89 (177)
132 2je0_A Acidic leucine-rich nuc 99.5 1.8E-14 6.2E-19 122.2 8.7 127 45-176 17-148 (149)
133 1dce_A Protein (RAB geranylger 99.5 5.7E-16 2E-20 160.4 -1.4 183 91-281 346-550 (567)
134 1a9n_A U2A', U2A'; complex (nu 99.5 3.8E-14 1.3E-18 123.9 8.7 61 464-526 87-153 (176)
135 4b8c_D Glucose-repressible alc 99.5 2.2E-14 7.5E-19 153.3 6.6 142 86-233 216-358 (727)
136 2o6r_A Variable lymphocyte rec 99.5 8.1E-13 2.8E-17 115.5 14.2 129 24-157 10-138 (177)
137 1ds9_A Outer arm dynein; leuci 99.4 1.3E-15 4.6E-20 136.0 -4.7 82 288-372 19-106 (198)
138 1a9n_A U2A', U2A'; complex (nu 99.4 3.9E-13 1.3E-17 117.4 10.9 132 42-180 16-152 (176)
139 2wfh_A SLIT homolog 2 protein 99.4 1E-12 3.4E-17 116.4 13.3 126 73-204 13-138 (193)
140 4gt6_A Cell surface protein; l 99.4 3.5E-11 1.2E-15 119.5 25.5 136 302-526 256-391 (394)
141 4gt6_A Cell surface protein; l 99.4 6E-11 2.1E-15 117.8 24.0 299 60-371 53-369 (394)
142 1ds9_A Outer arm dynein; leuci 99.4 3.4E-15 1.2E-19 133.3 -6.2 146 311-543 18-180 (198)
143 3g39_A Variable lymphocyte rec 99.3 4.1E-12 1.4E-16 110.0 10.2 108 312-504 10-117 (170)
144 3g39_A Variable lymphocyte rec 99.2 4.4E-11 1.5E-15 103.5 11.6 106 266-373 11-116 (170)
145 2r9u_A Variable lymphocyte rec 99.2 4.5E-11 1.5E-15 103.8 11.2 104 48-156 15-118 (174)
146 3un9_A NLR family member X1; l 99.2 3.6E-13 1.2E-17 132.0 -2.4 168 45-212 72-259 (372)
147 4h09_A Hypothetical leucine ri 99.2 2.7E-09 9.1E-14 105.4 24.9 338 90-540 42-379 (379)
148 4h09_A Hypothetical leucine ri 99.2 3.6E-09 1.2E-13 104.4 24.7 315 41-384 42-357 (379)
149 2r9u_A Variable lymphocyte rec 99.2 1.1E-10 3.6E-15 101.4 11.8 104 267-372 15-118 (174)
150 3un9_A NLR family member X1; l 99.2 1.6E-12 5.6E-17 127.3 -1.5 162 69-230 71-253 (372)
151 2ifg_A High affinity nerve gro 99.0 7.1E-10 2.4E-14 108.1 10.4 80 291-372 12-93 (347)
152 2ifg_A High affinity nerve gro 99.0 7.2E-10 2.5E-14 108.0 9.6 133 314-531 11-146 (347)
153 2ra8_A Uncharacterized protein 98.9 2.4E-09 8.3E-14 103.8 7.1 15 260-274 135-149 (362)
154 2ra8_A Uncharacterized protein 98.9 8.5E-09 2.9E-13 100.0 10.6 158 22-182 108-293 (362)
155 1io0_A Tropomodulin; LRR prote 98.5 3.3E-08 1.1E-12 86.5 2.5 62 465-526 93-164 (185)
156 3rw6_A Nuclear RNA export fact 98.4 1.5E-07 5.3E-12 86.4 5.5 78 464-543 169-257 (267)
157 1io0_A Tropomodulin; LRR prote 98.3 1.4E-07 4.9E-12 82.4 2.3 120 37-156 28-164 (185)
158 3e4g_A ATP synthase subunit S, 98.3 2.1E-07 7.2E-12 79.2 2.9 86 19-105 59-150 (176)
159 3e4g_A ATP synthase subunit S, 98.3 2.2E-07 7.5E-12 79.0 2.2 86 286-371 60-151 (176)
160 3rw6_A Nuclear RNA export fact 97.9 1.8E-05 6E-10 72.7 6.2 81 91-174 167-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00027 9.3E-09 61.2 2.3 113 42-154 38-168 (197)
162 3rfe_A Platelet glycoprotein I 96.9 0.0011 3.8E-08 53.5 5.5 39 464-502 30-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00051 1.8E-08 59.4 3.0 18 90-107 66-83 (197)
164 3rfe_A Platelet glycoprotein I 95.5 0.022 7.4E-07 45.8 6.0 36 95-131 32-67 (130)
165 2lz0_A Uncharacterized protein 65.6 6.2 0.00021 29.5 3.8 42 61-103 11-52 (100)
166 2lz0_A Uncharacterized protein 60.0 11 0.00037 28.1 4.3 39 329-368 14-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.4e-53 Score=456.67 Aligned_cols=502 Identities=30% Similarity=0.415 Sum_probs=386.2
Q ss_pred CCCCceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCC
Q 040468 18 TPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLA 97 (543)
Q Consensus 18 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~ 97 (543)
....+|++|++++|.+.+..|. +.++++|++|++++|.+++.+|..+ ..+++|++|++++|.+.+..|.. .+++|+
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~ 272 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGPIPPL--PLKSLQ 272 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCEEECCSSCCEESCCCC--CCTTCC
T ss_pred ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH-hcCCCCCEEECCCCcccCccCcc--ccCCCC
Confidence 4455789999999998887776 8889999999999999887777664 88999999999999887777654 889999
Q ss_pred EEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccC
Q 040468 98 TLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSN 177 (543)
Q Consensus 98 ~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~ 177 (543)
+|++++|.+++.+|..++..+++|++|++++|.+++..|..+.++++|++|++++|.+.+.+|...+..+++|++|++++
T Consensus 273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~ 352 (768)
T 3rgz_A 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352 (768)
T ss_dssp EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS
T ss_pred EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC
Confidence 99999999988888888876799999999999999889999999999999999999998888988777899999999999
Q ss_pred CcCCCcCcccccCCC-CcCEEeCCCCccCccCchhhhc--CCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccc
Q 040468 178 NSLQGHIFSKKFSLT-NLMTLQLDGNNFSGEIPESLSK--CRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEG 254 (543)
Q Consensus 178 n~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 254 (543)
|.+.+..+..+..++ +|+.|++++|.+.+..+..+.. +++|++|++++|.+....|..+..+++|+.|++++|.+.+
T Consensus 353 n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 432 (768)
T 3rgz_A 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432 (768)
T ss_dssp SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC
Confidence 998877778888777 9999999999998777777766 7899999999999988889999999999999999999998
Q ss_pred cCcccccCCCCCcEEEccCCcCccCCCCCCC-cccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCC
Q 040468 255 LIPIEFCQLRFLRILDLSNNTIFGTLPSCFS-PAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDR 333 (543)
Q Consensus 255 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~ 333 (543)
..|..+..+++|+.|++++|.+.+..+..+. +++|+.|++++|.+++..+..+..+++|++|++++|++++..|.+++.
T Consensus 433 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 512 (768)
T 3rgz_A 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc
Confidence 8899999999999999999999877766554 899999999999999888888999999999999999999999999999
Q ss_pred CCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCC--------CCCCCCCCCCCc
Q 040468 334 LPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVA--------PTSSSCGRASGY 405 (543)
Q Consensus 334 ~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~c~~~~~~ 405 (543)
+++|+.|++++|++++.+|..+..+++|++|++++|++.+.+|+.+.............. .....++.....
T Consensus 513 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (768)
T 3rgz_A 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592 (768)
T ss_dssp CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEE
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999988766543221110000 000000000000
Q ss_pred cccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhh
Q 040468 406 ASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQI 485 (543)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l 485 (543)
. ....+.....+..+....... .....+... +.. ....+++|++|||++|++++.+|..+
T Consensus 593 ~---------------~~~~~~~~~~~~~l~~~~~~~--l~~~~~~g~-~~~--~~~~l~~L~~LdLs~N~l~g~ip~~l 652 (768)
T 3rgz_A 593 L---------------LEFQGIRSEQLNRLSTRNPCN--ITSRVYGGH-TSP--TFDNNGSMMFLDMSYNMLSGYIPKEI 652 (768)
T ss_dssp E---------------EECTTCCGGGGGGGGGTCCSC--TTSCEEEEE-CCC--SCSSSBCCCEEECCSSCCBSCCCGGG
T ss_pred c---------------cccccccchhhhccccccccc--cccceeccc-Cch--hhhccccccEEECcCCcccccCCHHH
Confidence 0 000000000000000000000 000000000 000 00114567777777777776677777
Q ss_pred hcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcccCCccccccCcCCcCC
Q 040468 486 GYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVFR 543 (543)
Q Consensus 486 ~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~ 543 (543)
+.+++|+.|+|++|.+++.+|..|+.+++|+.||+++|++++.+|..+..+++|++|+
T Consensus 653 ~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 7777777777777777777777777777777777777777777777777777766653
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2e-50 Score=437.62 Aligned_cols=476 Identities=31% Similarity=0.437 Sum_probs=384.0
Q ss_pred CCCCCceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCC-CC
Q 040468 17 LTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSH-QK 95 (543)
Q Consensus 17 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~-~~ 95 (543)
+....+|++|++++|.+.+..|..+..+++|++|++++|.+++.+|.. .+++|++|++++|++.+..|..+... ++
T Consensus 219 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~ 295 (768)
T 3rgz_A 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDT 295 (768)
T ss_dssp CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTT
T ss_pred cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCc
Confidence 555668999999999999999999999999999999999998877763 78999999999999988888888765 99
Q ss_pred CCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchh-hcCCCCCCEEecccccccccCchHhhhCCCCCCEEE
Q 040468 96 LATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSS-FADMQMLARLDISYNQLTGEIPERMATGCFSLEILA 174 (543)
Q Consensus 96 L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~ 174 (543)
|++|++++|.+.+.+|..+.. +++|++|++++|.+.+.+|.. +.++++|++|++++|.+.+.+|..+....++|++|+
T Consensus 296 L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~ 374 (768)
T 3rgz_A 296 LTGLDLSGNHFYGAVPPFFGS-CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374 (768)
T ss_dssp CSEEECCSSEEEECCCGGGGG-CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEE
T ss_pred CCEEECcCCcCCCccchHHhc-CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEE
Confidence 999999999999888888877 899999999999998777765 999999999999999998888888776334999999
Q ss_pred ccCCcCCCcCcccccC--CCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcc
Q 040468 175 LSNNSLQGHIFSKKFS--LTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNL 252 (543)
Q Consensus 175 l~~n~~~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 252 (543)
+++|.+.+..+..+.. +++|++|++.+|.+.+..|..+..+++|+.|++++|.+....|..+..+++|+.|++++|.+
T Consensus 375 Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l 454 (768)
T 3rgz_A 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454 (768)
T ss_dssp CCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC
T ss_pred ccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcc
Confidence 9999988777777666 78999999999999988999999999999999999999888899999999999999999999
Q ss_pred cccCcccccCCCCCcEEEccCCcCccCCCCCCC-cccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccC
Q 040468 253 EGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFS-PAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRI 331 (543)
Q Consensus 253 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l 331 (543)
.+..|..+..+++|+.|++++|.+.+..+..+. +++|+.|++++|++++..+..+..+++|++|++++|++++.+|..+
T Consensus 455 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 534 (768)
T 3rgz_A 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG
T ss_pred cCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH
Confidence 999999999999999999999999977766554 8999999999999998888889999999999999999999999999
Q ss_pred CCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCc-c---------------------cccCCCCcccCCCCCCCC
Q 040468 332 DRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNN-L---------------------SGHIPPCLVNTSLSEGHD 389 (543)
Q Consensus 332 ~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~-~---------------------~~~~~~~~~~~~~~~~~~ 389 (543)
..+++|+.|++++|++++.+|..+..+..+..+++..+. + .+..+..+..+......
T Consensus 535 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 613 (768)
T 3rgz_A 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC- 613 (768)
T ss_dssp GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCS-
T ss_pred cCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccc-
Confidence 999999999999999998888877665554444333211 0 00111111111100000
Q ss_pred CCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCccccc--ccccCce
Q 040468 390 EPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQ--GRILTSM 467 (543)
Q Consensus 390 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L 467 (543)
. .......+. .+........+..+.+....+....+ ...+++|
T Consensus 614 ---~---l~~~~~~g~-----------------------------~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L 658 (768)
T 3rgz_A 614 ---N---ITSRVYGGH-----------------------------TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 658 (768)
T ss_dssp ---C---TTSCEEEEE-----------------------------CCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC
T ss_pred ---c---cccceeccc-----------------------------CchhhhccccccEEECcCCcccccCCHHHhccccC
Confidence 0 000000000 00000000011111111111110000 0116899
Q ss_pred eEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcccCCcc
Q 040468 468 FGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQ 532 (543)
Q Consensus 468 ~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 532 (543)
++|+|++|++++.+|..++.+++|+.|+|++|++++.+|..+..+++|+.||+++|++++.+|+.
T Consensus 659 ~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999975
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.1e-47 Score=401.35 Aligned_cols=454 Identities=20% Similarity=0.175 Sum_probs=308.7
Q ss_pred ceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEc
Q 040468 22 QLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDV 101 (543)
Q Consensus 22 ~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l 101 (543)
.+++|+++++.+++..|..+.++++|++|++++|.+.+..|.. +.++++|++|++++|++.+..|.++..+++|++|++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT-FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTT-TTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhh-ccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 7999999999999877888999999999999999998655655 589999999999999998888999999999999999
Q ss_pred CCCccccCC-chhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCC--EEEccCC
Q 040468 102 SNNFFQGHI-PVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLE--ILALSNN 178 (543)
Q Consensus 102 s~~~i~~~~-~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~--~L~l~~n 178 (543)
++|.++ .+ +..+ ..+++|++|++++|.+.+.....+..+++|++|++++|.+. .++...+..+++|+ .|++++|
T Consensus 113 ~~n~i~-~l~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 113 IQTGIS-SIDFIPL-HNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp TTSCCS-CGGGSCC-TTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC-EECHHHHHTTTTCCSEEEECTTC
T ss_pred cccCcc-cCCcchh-ccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc-ccChhhhhhhcccceeEEecCCC
Confidence 999998 44 4444 44899999999999998644445556999999999999998 56556666799999 8999999
Q ss_pred cCCCcCcccccCCC----------------------------------------------------CcCEEeCCCCccCc
Q 040468 179 SLQGHIFSKKFSLT----------------------------------------------------NLMTLQLDGNNFSG 206 (543)
Q Consensus 179 ~~~~~~~~~l~~l~----------------------------------------------------~L~~L~l~~~~~~~ 206 (543)
.+.+..+..+. .. +|+.+++.+|.+.+
T Consensus 190 ~l~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~ 268 (606)
T 3t6q_A 190 DIAGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268 (606)
T ss_dssp CCCEECTTTTT-TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS
T ss_pred ccCccChhHhh-hccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCc
Confidence 88765544432 23 34555555555554
Q ss_pred cCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCC--CC
Q 040468 207 EIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPS--CF 284 (543)
Q Consensus 207 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~ 284 (543)
..+..+..+++|++|++++|.+. ..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+. +.
T Consensus 269 ~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (606)
T 3t6q_A 269 ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347 (606)
T ss_dssp CCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred cCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhh
Confidence 44444555666666666666655 4455555666666666666666555555555666666666666655433222 22
Q ss_pred CcccccEEEcCCCcccccc--CCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccch-hhhCCCCC
Q 040468 285 SPAYIEQVHLSKNKIEGRL--ESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPV-QLCQLKEV 361 (543)
Q Consensus 285 ~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~-~l~~l~~L 361 (543)
.+++|+.|++++|.+++.. +..+..+++|++|++++|++.+..+..+..+++|+.|++++|++.+..+. .+..+++|
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 427 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC
Confidence 3556666666666665443 44455566666666666666555555566666666666666665544332 35556666
Q ss_pred CEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCC
Q 040468 362 QLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPP 441 (543)
Q Consensus 362 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (543)
++|++++|.+.+..|..+..++ .+.
T Consensus 428 ~~L~l~~n~l~~~~~~~~~~l~-----------------~L~-------------------------------------- 452 (606)
T 3t6q_A 428 KVLNLSHSLLDISSEQLFDGLP-----------------ALQ-------------------------------------- 452 (606)
T ss_dssp CEEECTTCCCBTTCTTTTTTCT-----------------TCC--------------------------------------
T ss_pred CEEECCCCccCCcCHHHHhCCC-----------------CCC--------------------------------------
Confidence 6666666665544443333322 111
Q ss_pred CCCccceeeeccCCcc-----cccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCC
Q 040468 442 MGKEETIQFTTKNMSY-----YYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIE 516 (543)
Q Consensus 442 ~~~~~~~~~~~~~~~~-----~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~ 516 (543)
.+.+....+.. ......+++|++|++++|++++..|..|..+++|++|+|++|++++..|+++..+++|
T Consensus 453 -----~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L- 526 (606)
T 3t6q_A 453 -----HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI- 526 (606)
T ss_dssp -----EEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-
T ss_pred -----EEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-
Confidence 11111111110 0011226778888888888876667777888888888888888887777788888888
Q ss_pred eeeCCCCcCcccCCccccccCcCCcC
Q 040468 517 SLDLSYNLLHGKIPSQLTVLTTLAVF 542 (543)
Q Consensus 517 ~L~l~~n~i~~~~~~~~~~l~~L~~l 542 (543)
.|++++|++++..|+.+..+++|+.|
T Consensus 527 ~L~L~~N~l~~~~~~~~~~l~~L~~L 552 (606)
T 3t6q_A 527 YLNLASNHISIILPSLLPILSQQRTI 552 (606)
T ss_dssp EEECCSSCCCCCCGGGHHHHHTSSEE
T ss_pred EEECcCCcccccCHhhcccCCCCCEE
Confidence 88888888887777777777777665
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.3e-45 Score=391.19 Aligned_cols=451 Identities=20% Similarity=0.187 Sum_probs=368.4
Q ss_pred CCCCCCCceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCC
Q 040468 15 NSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQ 94 (543)
Q Consensus 15 ~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 94 (543)
..+....+|++|+|++|.+.+..|..+.++++|++|++++|.+++..|.. +.++++|++|++++|++.+..+..+..++
T Consensus 51 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~l~~~~~~~l~ 129 (606)
T 3t6q_A 51 TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA-LSGPKALKHLFFIQTGISSIDFIPLHNQK 129 (606)
T ss_dssp TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTT-TSSCTTCCEEECTTSCCSCGGGSCCTTCT
T ss_pred hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhh-hcccccccEeeccccCcccCCcchhccCC
Confidence 35566668999999999999878888999999999999999998666665 58999999999999999887778899999
Q ss_pred CCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCC--EEecccccccccCchHhhhC------
Q 040468 95 KLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLA--RLDISYNQLTGEIPERMATG------ 166 (543)
Q Consensus 95 ~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~--~L~L~~~~~~~~~~~~~~~~------ 166 (543)
+|++|++++|.+.+..+..+.. +++|++|++++|.+++..+..+..+++|+ .|++++|.+.+ ++...+..
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~-~~~~~~~~~~L~~L 207 (606)
T 3t6q_A 130 TLESLYLGSNHISSIKLPKGFP-TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSL 207 (606)
T ss_dssp TCCEEECCSSCCCCCCCCTTCC-CTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE-ECTTTTTTCEEEEE
T ss_pred cccEEECCCCcccccCcccccC-CcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCc-cChhHhhhcccccc
Confidence 9999999999998422233334 89999999999999977788899999999 89999998874 33222221
Q ss_pred -------------------------------------------C--CCCCEEEccCCcCCCcCcccccCCCCcCEEeCCC
Q 040468 167 -------------------------------------------C--FSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDG 201 (543)
Q Consensus 167 -------------------------------------------~--~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 201 (543)
+ .+++.|++++|.+.+..+..+..+++|++|++++
T Consensus 208 ~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 287 (606)
T 3t6q_A 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTA 287 (606)
T ss_dssp ECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTT
T ss_pred ccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccC
Confidence 1 1577888888888877777788999999999999
Q ss_pred CccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccC-cccccCCCCCcEEEccCCcCccCC
Q 040468 202 NNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLI-PIEFCQLRFLRILDLSNNTIFGTL 280 (543)
Q Consensus 202 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~ 280 (543)
|.++ .+|..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+.. +..+..+++|+.|++++|.+.+..
T Consensus 288 n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 366 (606)
T 3t6q_A 288 THLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD 366 (606)
T ss_dssp SCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE
T ss_pred CccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc
Confidence 9988 67778899999999999999998777888999999999999999887544 445889999999999999987653
Q ss_pred --C-CCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCc-cCCCCCCCCEEEccCcccccccchhhh
Q 040468 281 --P-SCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPN-RIDRLPQLSYLLLANNYIEGEIPVQLC 356 (543)
Q Consensus 281 --~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~-~l~~~~~L~~L~l~~n~i~~~~~~~l~ 356 (543)
+ .+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+. .+..+++|+.|++++|.+.+..+..+.
T Consensus 367 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 446 (606)
T 3t6q_A 367 CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446 (606)
T ss_dssp ESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT
T ss_pred CcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHh
Confidence 3 344589999999999999888888899999999999999999866544 488999999999999999888888899
Q ss_pred CCCCCCEEeCCCCcccccCC---CCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCccccc
Q 040468 357 QLKEVQLIDLSHNNLSGHIP---PCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALD 433 (543)
Q Consensus 357 ~l~~L~~L~l~~n~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (543)
.+++|++|++++|++.+... ..+..++ .+.......+
T Consensus 447 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~-----------------~L~~L~Ls~n----------------------- 486 (606)
T 3t6q_A 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLG-----------------RLEILVLSFC----------------------- 486 (606)
T ss_dssp TCTTCCEEECTTCBCGGGEECSSCGGGGCT-----------------TCCEEECTTS-----------------------
T ss_pred CCCCCCEEECCCCCCCccccccchhhccCC-----------------CccEEECCCC-----------------------
Confidence 99999999999999875221 1222222 1111111111
Q ss_pred ccCCCCCCCCCccceeeeccCCcccc--cccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhc
Q 040468 434 YVGSRTPPMGKEETIQFTTKNMSYYY--QGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSN 511 (543)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~ 511 (543)
.+.... ....+++|++|++++|++++..|..+..+++| +|++++|.+++..|..+..
T Consensus 487 --------------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~ 545 (606)
T 3t6q_A 487 --------------------DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPI 545 (606)
T ss_dssp --------------------CCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHH
T ss_pred --------------------ccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhccc
Confidence 110000 01126899999999999998889999999999 9999999999888999999
Q ss_pred cCCCCeeeCCCCcCcccCC
Q 040468 512 LKQIESLDLSYNLLHGKIP 530 (543)
Q Consensus 512 l~~L~~L~l~~n~i~~~~~ 530 (543)
+++|+.|++++|++.+..+
T Consensus 546 l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 546 LSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp HHTSSEEECTTCCEECSGG
T ss_pred CCCCCEEeCCCCCccccCC
Confidence 9999999999999987544
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.8e-44 Score=386.01 Aligned_cols=518 Identities=18% Similarity=0.145 Sum_probs=335.6
Q ss_pred CceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEE
Q 040468 21 FQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLD 100 (543)
Q Consensus 21 ~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ 100 (543)
.++++|+++++.+++..+..+.++++|++|++++|.+++..|.. +.++++|++|++++|++.+..+.+|.++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL-CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTH-HHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHH-HhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 48999999999999877778999999999999999998655554 58999999999999999877777899999999999
Q ss_pred cCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhh--CCCCCCEEEccCC
Q 040468 101 VSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMAT--GCFSLEILALSNN 178 (543)
Q Consensus 101 ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~--~~~~L~~L~l~~n 178 (543)
+++|.+. .++...+..+++|++|++++|.+++..+..+.++++|++|++++|.+. .++...+. .+++|++|++++|
T Consensus 104 L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 104 LMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ-ALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp CCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC-CBCHHHHGGGTTCEESEEECTTC
T ss_pred CCCCccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc-ccCHHHhhccccccccEEECCCC
Confidence 9999998 555444444999999999999999887888999999999999999998 44444332 3688999999999
Q ss_pred cCCCcCcccccCC---------------------------CCcCEEeCCCCccCccCchhhhcCCC--CCEEEccCCcCC
Q 040468 179 SLQGHIFSKKFSL---------------------------TNLMTLQLDGNNFSGEIPESLSKCRR--LGGLYLSDNHLS 229 (543)
Q Consensus 179 ~~~~~~~~~l~~l---------------------------~~L~~L~l~~~~~~~~~~~~l~~~~~--L~~L~l~~~~~~ 229 (543)
.+.+..+..+..+ ++|+.|++++|.+.+..+..+..++. |+.|++++|.+.
T Consensus 182 ~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~ 261 (680)
T 1ziw_A 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261 (680)
T ss_dssp CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC
T ss_pred cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC
Confidence 8887665544433 45677777777777666667766654 888888888887
Q ss_pred CcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccC-----CC-----CCCCcccccEEEcCCCcc
Q 040468 230 GEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGT-----LP-----SCFSPAYIEQVHLSKNKI 299 (543)
Q Consensus 230 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-----~~-----~~~~~~~L~~L~l~~~~~ 299 (543)
...+..+..+++|+.|++++|.+.+..+..+..+++|+.|+++++...+. .+ .+..+++|+.|++++|.+
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l 341 (680)
T 1ziw_A 262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCB
T ss_pred ccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCcc
Confidence 66677788888888888888888877777778888888888876543321 11 222367788888888877
Q ss_pred ccccCCCCCCCCCccEEEcccccccc--ccCccCCC--CCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccC
Q 040468 300 EGRLESVIPDSPNLVTLDLSYNCLHG--SIPNRIDR--LPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHI 375 (543)
Q Consensus 300 ~~~~~~~~~~~~~L~~L~l~~~~i~~--~~~~~l~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 375 (543)
.+..+..+..+++|++|++++|.+.. .....+.. .++|+.|++++|++++..+..+..+++|++|++++|.+.+.+
T Consensus 342 ~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 421 (680)
T 1ziw_A 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEEC
T ss_pred CCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcccc
Confidence 77666667777777777777665321 11111211 134555555555555444555555555555555555554444
Q ss_pred CC-CcccCCCCC------CCCCC-CCCCCCCCCCCCCcccccccccc-CCccCCCCCCCCCCcccccc-----c-CCCCC
Q 040468 376 PP-CLVNTSLSE------GHDEP-VAPTSSSCGRASGYASSYTKTAL-NATTPFSSSCGRGYPYALDY-----V-GSRTP 440 (543)
Q Consensus 376 ~~-~~~~~~~~~------~~~~~-~~~~~~~c~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~-~~~~~ 440 (543)
|+ .+..++... +.... .......|+.+.......+.-.. .........+..-....++. . .....
T Consensus 422 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 501 (680)
T 1ziw_A 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501 (680)
T ss_dssp CSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhc
Confidence 32 222221110 00000 00011122222222221111000 00000000000010111100 0 01122
Q ss_pred CCCCccceeeeccCCccccc----------ccccCceeEEEcccCccccccC-hhhhcccccCeeeCcCCccccccChhh
Q 040468 441 PMGKEETIQFTTKNMSYYYQ----------GRILTSMFGIDLSCNKLTGEIP-TQIGYLTKIHALNLSHNNLTGTIPTTF 509 (543)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~L~~L~ls~n~l~~~~~-~~l~~l~~L~~L~ls~n~i~~~~~~~~ 509 (543)
....++.+.+....+..... ...+++|++|+|++|+++ .+| ..|..+++|++|++++|.+++..+..|
T Consensus 502 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 580 (680)
T 1ziw_A 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVF 580 (680)
T ss_dssp TCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHh
Confidence 23344444444444333211 223677888888888888 454 457888888888888888886666667
Q ss_pred hccCCCCeeeCCCCcCcccCCcccc-ccCcCCcC
Q 040468 510 SNLKQIESLDLSYNLLHGKIPSQLT-VLTTLAVF 542 (543)
Q Consensus 510 ~~l~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~l 542 (543)
..+++|+.|++++|++++..+..+. .+++|++|
T Consensus 581 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l 614 (680)
T 1ziw_A 581 NNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL 614 (680)
T ss_dssp TTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEE
T ss_pred CCCCCCCEEECCCCcCCccChhHhcccccccCEE
Confidence 7888888888888888866666565 56666654
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.5e-44 Score=388.10 Aligned_cols=505 Identities=20% Similarity=0.144 Sum_probs=334.3
Q ss_pred CCCCCceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCC
Q 040468 17 LTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKL 96 (543)
Q Consensus 17 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L 96 (543)
+....+|++|+++++.+.+..|..+.++++|++|++++|.++ .+|...+.++++|++|++++|++.+..+.++..+++|
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 123 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccCccChhHccccCCC
Confidence 344458999999999998888888889999999999999887 5666556889999999999998877777888899999
Q ss_pred CEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhc--CCCCCCEEecccccccccCchHhhhC--------
Q 040468 97 ATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFA--DMQMLARLDISYNQLTGEIPERMATG-------- 166 (543)
Q Consensus 97 ~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~-------- 166 (543)
++|++++|.+.+..+..+.. +++|++|++++|.+++..+..+. .+++|++|++++|.+.+..+.. +..
T Consensus 124 ~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~ 201 (680)
T 1ziw_A 124 ITLDLSHNGLSSTKLGTQVQ-LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC-FHAIGRLFGLF 201 (680)
T ss_dssp CEEECCSSCCSCCCCCSSSC-CTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTG-GGGSSEECEEE
T ss_pred CEEECCCCcccccCchhhcc-cccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhh-hhhhhhhhhhh
Confidence 99999999887544444444 88888888888888766555544 4477888888887766332221 111
Q ss_pred -------------------CCC--------------------------CCEEEccCCcCCCcCcccccCCCCcCEEeCCC
Q 040468 167 -------------------CFS--------------------------LEILALSNNSLQGHIFSKKFSLTNLMTLQLDG 201 (543)
Q Consensus 167 -------------------~~~--------------------------L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 201 (543)
.++ |++|++++|.+.+..+..+..+++|++|++++
T Consensus 202 l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (680)
T 1ziw_A 202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281 (680)
T ss_dssp CTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCC
Confidence 123 55555555554444444455555555555555
Q ss_pred CccCccCchhhhcCCCCCEEEccCCcCCC-----ccc----ccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEcc
Q 040468 202 NNFSGEIPESLSKCRRLGGLYLSDNHLSG-----EIP----RWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLS 272 (543)
Q Consensus 202 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 272 (543)
|.+.+..+..+..+++|+.++++++.... ..| ..+..+++|+.+++++|.+.+..+..+..+++|+.|+++
T Consensus 282 n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 361 (680)
T 1ziw_A 282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 361 (680)
T ss_dssp CCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECT
T ss_pred CccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECC
Confidence 55554444555555555555555433221 111 145566777777777777776666667777777777777
Q ss_pred CCcCcc--CCCCCCC---cccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccC-ccCCCCCCCCEEEccCcc
Q 040468 273 NNTIFG--TLPSCFS---PAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIP-NRIDRLPQLSYLLLANNY 346 (543)
Q Consensus 273 ~~~~~~--~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~l~~~~~L~~L~l~~n~ 346 (543)
+|.+.. .....+. .++|+.|++++|.+++..+..+..+++|++|++++|.+.+.++ ..+..+++|+.|++++|+
T Consensus 362 ~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp TCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred CCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence 765321 1111111 2578888888888887777888889999999999999876554 678889999999999998
Q ss_pred cccccchhhhCCCCCCEEeCCCCccc--ccCCCCcccCCCCC------CCCCCCCC-CCCCCCCCCCccccccccccCCc
Q 040468 347 IEGEIPVQLCQLKEVQLIDLSHNNLS--GHIPPCLVNTSLSE------GHDEPVAP-TSSSCGRASGYASSYTKTALNAT 417 (543)
Q Consensus 347 i~~~~~~~l~~l~~L~~L~l~~n~~~--~~~~~~~~~~~~~~------~~~~~~~~-~~~~c~~~~~~~~~~~~~~~~~~ 417 (543)
+++..+..|..+++|+.|++++|.+. +.+|..+..++... +......+ ....+..+.......+.-...
T Consensus 442 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~-- 519 (680)
T 1ziw_A 442 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL-- 519 (680)
T ss_dssp EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGG--
T ss_pred cceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCcccc--
Confidence 88777777888888888888888775 34555554443221 11111111 123344443333333221000
Q ss_pred cCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCccccc--ccccCceeEEEcccCccccccChhhhcccccCeee
Q 040468 418 TPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQ--GRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALN 495 (543)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ 495 (543)
.......+ ..........++.+.+....+...-. ...+++|++|++++|+++...+..|..+++|++|+
T Consensus 520 --~~~~~~~~-------~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 590 (680)
T 1ziw_A 520 --WKHANPGG-------PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN 590 (680)
T ss_dssp --GSTTSTTS-------CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred --chhhccCC-------cchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEE
Confidence 00000000 00112233445555555554443322 23378999999999999954556689999999999
Q ss_pred CcCCccccccChhhh-ccCCCCeeeCCCCcCcccCC--ccccc
Q 040468 496 LSHNNLTGTIPTTFS-NLKQIESLDLSYNLLHGKIP--SQLTV 535 (543)
Q Consensus 496 ls~n~i~~~~~~~~~-~l~~L~~L~l~~n~i~~~~~--~~~~~ 535 (543)
|++|.+++..+..+. .+++|+.|++++|++.+..+ .+|..
T Consensus 591 L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~ 633 (680)
T 1ziw_A 591 LQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVN 633 (680)
T ss_dssp CTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEEC
T ss_pred CCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHH
Confidence 999999988887787 89999999999999988665 44443
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.6e-45 Score=386.91 Aligned_cols=449 Identities=18% Similarity=0.141 Sum_probs=304.1
Q ss_pred CceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEE
Q 040468 21 FQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLD 100 (543)
Q Consensus 21 ~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ 100 (543)
.++++|+++++.+.+..+..+.++++|++|++++|.+++..|.. +.++++|++|++++|++.+..|.+|.++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~-~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKA-WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT-TTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHH-hhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 48999999999999777778999999999999999998554544 58999999999999999888899999999999999
Q ss_pred cCCCccccCCc-hhhhcCCCCCcEEEcCCCcCcc-CCchhhcCCCCCCEEecccccccccCchHhhhCCCC----CCEEE
Q 040468 101 VSNNFFQGHIP-VEIGTYLPGLMEFNLSRNAFNG-SIPSSFADMQMLARLDISYNQLTGEIPERMATGCFS----LEILA 174 (543)
Q Consensus 101 ls~~~i~~~~~-~~~~~~l~~L~~L~L~~~~i~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~----L~~L~ 174 (543)
+++|.+. .++ ..+.. +++|++|++++|.+.+ .+|..+.++++|++|++++|.+.+..+. .+..+.+ +++++
T Consensus 111 L~~n~l~-~~~~~~~~~-l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~~l~~L~ 187 (606)
T 3vq2_A 111 AVETKLA-SLESFPIGQ-LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN-DLQFLRENPQVNLSLD 187 (606)
T ss_dssp CTTSCCC-CSSSSCCTT-CTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT-TTHHHHHCTTCCCEEE
T ss_pred ccCCccc-cccccccCC-CCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh-hhhhhhccccccceee
Confidence 9999998 444 44444 9999999999999985 5688999999999999999998843333 2222433 45899
Q ss_pred ccCCcCCCcCcccccCCCCcCEEeCCCCccCc-cCchh------------------------------------------
Q 040468 175 LSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSG-EIPES------------------------------------------ 211 (543)
Q Consensus 175 l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~------------------------------------------ 211 (543)
+++|.+.......+. ..+|+.|++++|.+.+ ..+..
T Consensus 188 l~~n~l~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 266 (606)
T 3vq2_A 188 MSLNPIDFIQDQAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266 (606)
T ss_dssp CTTCCCCEECTTTTT-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEE
T ss_pred ccCCCcceeCccccc-CceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhe
Confidence 999988865544444 3478888888876541 12222
Q ss_pred --------------hhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCc
Q 040468 212 --------------LSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIF 277 (543)
Q Consensus 212 --------------l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 277 (543)
+..+++|+.++++++.+. ..+ .+..+++|+.|++++|.+. .+| .+ .+++|+.|++++|...
T Consensus 267 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~~~ 341 (606)
T 3vq2_A 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMNKGS 341 (606)
T ss_dssp EECCCTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESCSSC
T ss_pred eccccccccccccccccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccCc-ccc-cC-CCCccceeeccCCcCc
Confidence 333445555555555554 222 4455555555555555552 333 23 5555555555555333
Q ss_pred cCCCCCCCcccccEEEcCCCcccccc--CCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccc-hh
Q 040468 278 GTLPSCFSPAYIEQVHLSKNKIEGRL--ESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIP-VQ 354 (543)
Q Consensus 278 ~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~-~~ 354 (543)
+.. ....+++|+.|++++|.+++.. +..+..+++|++|++++|.++ ..|..+..+++|+.|++++|++.+..+ ..
T Consensus 342 ~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 419 (606)
T 3vq2_A 342 ISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSA 419 (606)
T ss_dssp EEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTT
T ss_pred cch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhh
Confidence 222 2223555555555555554432 333445555555555555555 344555555556666666555554444 34
Q ss_pred hhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccc
Q 040468 355 LCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDY 434 (543)
Q Consensus 355 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (543)
+..+++|++|++++|.+.+..|..+..++
T Consensus 420 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--------------------------------------------------- 448 (606)
T 3vq2_A 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLT--------------------------------------------------- 448 (606)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCT---------------------------------------------------
T ss_pred hhccccCCEEECcCCCCCccchhhhcCCC---------------------------------------------------
Confidence 55555566666665555544443333222
Q ss_pred cCCCCCCCCCccceeeeccCCcc---cccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhc
Q 040468 435 VGSRTPPMGKEETIQFTTKNMSY---YYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSN 511 (543)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~ 511 (543)
.++.+.+....+.. -.....+++|++|++++|++++..|..+..+++|++|+|++|++++..|..|..
T Consensus 449 ---------~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 519 (606)
T 3vq2_A 449 ---------SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519 (606)
T ss_dssp ---------TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTT
T ss_pred ---------CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccC
Confidence 11111111111111 001122689999999999999777888999999999999999999888999999
Q ss_pred cCCCCeeeCCCCcCcccCCccccccC-cCCcC
Q 040468 512 LKQIESLDLSYNLLHGKIPSQLTVLT-TLAVF 542 (543)
Q Consensus 512 l~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~l 542 (543)
+++|+.|++++|+++ .+|..+..++ +|++|
T Consensus 520 l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l 550 (606)
T 3vq2_A 520 LYSLSTLDCSFNRIE-TSKGILQHFPKSLAFF 550 (606)
T ss_dssp CTTCCEEECTTSCCC-CEESCGGGSCTTCCEE
T ss_pred CCcCCEEECCCCcCc-ccCHhHhhhcccCcEE
Confidence 999999999999999 6777788886 57765
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.3e-45 Score=387.15 Aligned_cols=441 Identities=20% Similarity=0.184 Sum_probs=315.7
Q ss_pred CCCCCCceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCC
Q 040468 16 SLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQK 95 (543)
Q Consensus 16 ~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 95 (543)
.+....+|++|++++|.+++..|..+.++++|++|++++|.+++..|.. +.++++|++|++++|.+.+..+..++.+++
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 129 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS-FSGLTSLENLVAVETKLASLESFPIGQLIT 129 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTS-STTCTTCCEEECTTSCCCCSSSSCCTTCTT
T ss_pred hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhh-cCCcccCCEEEccCCccccccccccCCCCC
Confidence 4556668999999999999777888999999999999999998655665 589999999999999998887788999999
Q ss_pred CCEEEcCCCcccc-CCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCC----EEecccccccccCchHhhhCCCCC
Q 040468 96 LATLDVSNNFFQG-HIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLA----RLDISYNQLTGEIPERMATGCFSL 170 (543)
Q Consensus 96 L~~L~ls~~~i~~-~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~----~L~L~~~~~~~~~~~~~~~~~~~L 170 (543)
|++|++++|.+.+ .+|..+.. +++|++|++++|.+++..+..+..+++|+ +|++++|.+. .++...+... +|
T Consensus 130 L~~L~L~~n~l~~~~lp~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~~-~L 206 (606)
T 3vq2_A 130 LKKLNVAHNFIHSCKLPAYFSN-LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI-KL 206 (606)
T ss_dssp CCEEECCSSCCCCCCCCGGGGT-CTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTTC-EE
T ss_pred CCEEeCCCCcccceechHhHhh-cCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcc-eeCcccccCc-ee
Confidence 9999999999874 46777776 89999999999999877777676665544 7888888887 6666655533 67
Q ss_pred CEEEccCCcCC----------------------------------------------------------CcCcccccCCC
Q 040468 171 EILALSNNSLQ----------------------------------------------------------GHIFSKKFSLT 192 (543)
Q Consensus 171 ~~L~l~~n~~~----------------------------------------------------------~~~~~~l~~l~ 192 (543)
++|++++|.+. +..+ .+..++
T Consensus 207 ~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~-~~~~l~ 285 (606)
T 3vq2_A 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV-KFHCLA 285 (606)
T ss_dssp EEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGG-SCGGGT
T ss_pred eeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccccccccc-ccccCC
Confidence 77777776543 1111 144567
Q ss_pred CcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEcc
Q 040468 193 NLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLS 272 (543)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 272 (543)
+|+.+++.++.+. ..+ .+..+++|++|++++|.+. ..|. + .+++|+.|++++|...+.. .+..+++|+.|+++
T Consensus 286 ~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~-~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls 358 (606)
T 3vq2_A 286 NVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLK-QFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLS 358 (606)
T ss_dssp TCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCS-SCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECC
T ss_pred CCCEEEecCccch-hhh-hccccccCCEEEcccccCc-cccc-C-CCCccceeeccCCcCccch--hhccCCCCCEEECc
Confidence 7777777777765 344 5667777888888777773 4553 3 6777777777777443322 44566777777777
Q ss_pred CCcCccCC---CCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccC-ccCCCCCCCCEEEccCcccc
Q 040468 273 NNTIFGTL---PSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIP-NRIDRLPQLSYLLLANNYIE 348 (543)
Q Consensus 273 ~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~l~~~~~L~~L~l~~n~i~ 348 (543)
+|.+.+.. ..+..+++|+.|++++|.+++.. ..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|+++
T Consensus 359 ~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 437 (606)
T 3vq2_A 359 RNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437 (606)
T ss_dssp SSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCE
T ss_pred CCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCC
Confidence 77665441 22223566777777777766533 556666777777777777765544 46666777777777777776
Q ss_pred cccchhhhCCCCCCEEeCCCCccccc-CCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCC
Q 040468 349 GEIPVQLCQLKEVQLIDLSHNNLSGH-IPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRG 427 (543)
Q Consensus 349 ~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (543)
+..|..+.++++|++|++++|.+.+. .|..+..++... ......+
T Consensus 438 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~-----------------~L~Ls~n----------------- 483 (606)
T 3vq2_A 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT-----------------FLDLSKC----------------- 483 (606)
T ss_dssp ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC-----------------EEECTTS-----------------
T ss_pred ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCC-----------------EEECCCC-----------------
Confidence 66666667777777777777776652 344443332111 1111110
Q ss_pred CcccccccCCCCCCCCCccceeeeccCCcccc--cccccCceeEEEcccCccccccChhhhcccccCeeeCcCCcccccc
Q 040468 428 YPYALDYVGSRTPPMGKEETIQFTTKNMSYYY--QGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTI 505 (543)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~ 505 (543)
.+.... ....+++|++|++++|++++..|..+..+++|++|+|++|+++ .+
T Consensus 484 --------------------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~ 536 (606)
T 3vq2_A 484 --------------------------QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TS 536 (606)
T ss_dssp --------------------------CCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CE
T ss_pred --------------------------cCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-cc
Confidence 000000 0011689999999999999777999999999999999999999 77
Q ss_pred ChhhhccC-CCCeeeCCCCcCcccCC
Q 040468 506 PTTFSNLK-QIESLDLSYNLLHGKIP 530 (543)
Q Consensus 506 ~~~~~~l~-~L~~L~l~~n~i~~~~~ 530 (543)
|..+..++ +|+.|++++|++.+..+
T Consensus 537 p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 537 KGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp ESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CHhHhhhcccCcEEEccCCCcccCCc
Confidence 77799997 69999999999987544
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2e-44 Score=379.35 Aligned_cols=439 Identities=18% Similarity=0.161 Sum_probs=289.3
Q ss_pred ceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEc
Q 040468 22 QLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDV 101 (543)
Q Consensus 22 ~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l 101 (543)
++++|+++++.+++..+..+..+++|++|++++|.+++ ++...+.++++|++|++++|++.+..+.+|.++++|++|++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc-cCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 79999999999997777789999999999999999984 44444689999999999999998888899999999999999
Q ss_pred CCCccccCCchhhhcCCCCCcEEEcCCCcCcc-CCchhhcCCCCCCEEecccccccccCchHhhhCCCCC----CEEEcc
Q 040468 102 SNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNG-SIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSL----EILALS 176 (543)
Q Consensus 102 s~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L----~~L~l~ 176 (543)
++|.+. .++...+..+++|++|++++|.+.+ .+|..+.++++|++|++++|.+. .++...+..+++| +.++++
T Consensus 108 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp TTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC-EECGGGGHHHHTCTTCCCEEECT
T ss_pred cccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc-eecHHHccchhccchhhhhcccC
Confidence 999998 5555334449999999999999986 46899999999999999999998 4444444446677 899999
Q ss_pred CCcCCCcCcccccCCCCcCEEeCCCCcc----------------------------------------------------
Q 040468 177 NNSLQGHIFSKKFSLTNLMTLQLDGNNF---------------------------------------------------- 204 (543)
Q Consensus 177 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~---------------------------------------------------- 204 (543)
+|.+....+..+... +|+.|++.++..
T Consensus 186 ~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 264 (570)
T 2z63_A 186 LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264 (570)
T ss_dssp TCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred CCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence 999887666555444 688887766521
Q ss_pred ------CccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCcc
Q 040468 205 ------SGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFG 278 (543)
Q Consensus 205 ------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 278 (543)
.+..+..+..+++|+.++++++.+. ..|..+..+ +|+.|++++|.+... |. ..+++|+.|++++|.+..
T Consensus 265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l-~~--~~l~~L~~L~l~~n~~~~ 339 (570)
T 2z63_A 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQF-PT--LKLKSLKRLTFTSNKGGN 339 (570)
T ss_dssp EETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSC-CB--CBCSSCCEEEEESCBSCC
T ss_pred hcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccccc-Cc--ccccccCEEeCcCCcccc
Confidence 1122333444555555555555554 344444444 555555555555522 22 244555555555555443
Q ss_pred CCCCCCCcccccEEEcCCCcccccc--CCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccc-hhh
Q 040468 279 TLPSCFSPAYIEQVHLSKNKIEGRL--ESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIP-VQL 355 (543)
Q Consensus 279 ~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~-~~l 355 (543)
..+. ..+++|+.|++++|.+++.. +..+..+++|++|++++|.+.+. +..+..+++|+.|++++|.+.+..+ ..+
T Consensus 340 ~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 417 (570)
T 2z63_A 340 AFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417 (570)
T ss_dssp BCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTT
T ss_pred cccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhhh
Confidence 3322 33555566666555554332 23344555566666666555532 2225555556666666655554333 344
Q ss_pred hCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCccccccc
Q 040468 356 CQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYV 435 (543)
Q Consensus 356 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (543)
..+++|++|++++|.+.+..|..+..++ .+.
T Consensus 418 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----------------~L~-------------------------------- 448 (570)
T 2z63_A 418 LSLRNLIYLDISHTHTRVAFNGIFNGLS-----------------SLE-------------------------------- 448 (570)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCT-----------------TCC--------------------------------
T ss_pred hcCCCCCEEeCcCCcccccchhhhhcCC-----------------cCc--------------------------------
Confidence 5555566666666555544333332222 111
Q ss_pred CCCCCCCCCccceeeeccCCcc-c--ccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhcc
Q 040468 436 GSRTPPMGKEETIQFTTKNMSY-Y--YQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNL 512 (543)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l 512 (543)
.+.+....+.. . .....+++|++|++++|++++..|..+..+++|++|+|++|.+++..|..|..+
T Consensus 449 -----------~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 517 (570)
T 2z63_A 449 -----------VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517 (570)
T ss_dssp -----------EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred -----------EEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcc
Confidence 11111111000 0 001126788888888888886667778888888888888888887777778888
Q ss_pred CCCCeeeCCCCcCcccCCc
Q 040468 513 KQIESLDLSYNLLHGKIPS 531 (543)
Q Consensus 513 ~~L~~L~l~~n~i~~~~~~ 531 (543)
++|+.|++++|++++.+|.
T Consensus 518 ~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 518 TSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TTCCEEECCSSCBCCCTTT
T ss_pred cCCcEEEecCCcccCCCcc
Confidence 8888888888888776653
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1e-42 Score=381.12 Aligned_cols=490 Identities=19% Similarity=0.146 Sum_probs=291.4
Q ss_pred CceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEE
Q 040468 21 FQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLD 100 (543)
Q Consensus 21 ~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ 100 (543)
.++++|+|++|.+++..+..+.++++|++|++++|...+.++...+.++++|++|+|++|.+.+..|.+|.++++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 38999999999999878888999999999999999766677555579999999999999999888899999999999999
Q ss_pred cCCCccccCCchh-hhcCCCCCcEEEcCCCcCccCCc-hhhcCCCCCCEEecccccccccCchHhhhCC--CCCCEEEcc
Q 040468 101 VSNNFFQGHIPVE-IGTYLPGLMEFNLSRNAFNGSIP-SSFADMQMLARLDISYNQLTGEIPERMATGC--FSLEILALS 176 (543)
Q Consensus 101 ls~~~i~~~~~~~-~~~~l~~L~~L~L~~~~i~~~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~--~~L~~L~l~ 176 (543)
+++|.+.+.++.. .+..+++|++|++++|.+.+..+ ..+.++++|++|++++|.+.+..+..+.. + ++|+.|+++
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~-l~~~~L~~L~L~ 182 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP-LQGKTLSFFSLA 182 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH-HHHCSSCCCEEC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc-ccCCccceEECC
Confidence 9999998655554 34449999999999999986544 67999999999999999998555554433 4 789999999
Q ss_pred CCcCCCcCcccccCCCC------cCEEeCCCCccCccCchhhhcC---CCCCEEEccCCc---------CCCcccccccC
Q 040468 177 NNSLQGHIFSKKFSLTN------LMTLQLDGNNFSGEIPESLSKC---RRLGGLYLSDNH---------LSGEIPRWLGN 238 (543)
Q Consensus 177 ~n~~~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~~---------~~~~~~~~l~~ 238 (543)
+|.+....+..+..+++ |+.|++++|.+....+..+... ..++.+.+..+. +.......+..
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 99988766666655554 9999999987765544433321 233444433111 11111111221
Q ss_pred --CCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCC-cccccEEEcCCCccccccCCCCCCCCCccE
Q 040468 239 --LSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFS-PAYIEQVHLSKNKIEGRLESVIPDSPNLVT 315 (543)
Q Consensus 239 --~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 315 (543)
.++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+. +++|+.|++++|.+++..+..+..+++|++
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence 13444444444444444444444444444444444444443332222 444444444444444444444444444444
Q ss_pred EEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCC---CCCCCCCC
Q 040468 316 LDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSL---SEGHDEPV 392 (543)
Q Consensus 316 L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~---~~~~~~~~ 392 (543)
|++++|.+....+..+..+++|+.|++++|.+++ + ..+++|+.|++++|++. .+|.....+.. ..+.....
T Consensus 343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i----~~~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l 416 (844)
T 3j0a_A 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-I----HFIPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENL 416 (844)
T ss_dssp EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-C----SSCCSCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCCSS
T ss_pred EECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-c----cCCCCcchhccCCCCcc-cccccccccceeecccCccccC
Confidence 4444444443333344444444444444444431 1 11344444444444443 22221111110 00000000
Q ss_pred CC--CCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCccc-------ccccc
Q 040468 393 AP--TSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYY-------YQGRI 463 (543)
Q Consensus 393 ~~--~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 463 (543)
.. ....++.+.......+.-. .+.... .....+.++.+......+... .....
T Consensus 417 ~~~~~~~~l~~L~~L~Ls~N~l~---------~~~~~~---------~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~ 478 (844)
T 3j0a_A 417 DILYFLLRVPHLQILILNQNRFS---------SCSGDQ---------TPSENPSLEQLFLGENMLQLAWETELCWDVFEG 478 (844)
T ss_dssp TTHHHHTTCTTCCEEEEESCCCC---------CCCSSS---------SSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSC
T ss_pred chhhhhhcCCccceeeCCCCccc---------cccccc---------ccccCCccccccCCCCccccccccccchhhhcC
Confidence 00 0011222222222221100 000000 000011111111111111100 00112
Q ss_pred cCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcccCCccccccC
Q 040468 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLT 537 (543)
Q Consensus 464 ~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~ 537 (543)
+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+. ++|+.|++++|++++..|+.+..+.
T Consensus 479 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L~ 550 (844)
T 3j0a_A 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLS 550 (844)
T ss_dssp BCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSCC
T ss_pred cccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhCCcC
Confidence 68899999999999966677788999999999999999876666655 8899999999999988887765443
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-43 Score=372.28 Aligned_cols=419 Identities=18% Similarity=0.161 Sum_probs=282.4
Q ss_pred CCCCCCceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCC
Q 040468 16 SLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQK 95 (543)
Q Consensus 16 ~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 95 (543)
.+....+|++|++++|++.+..+..+.++++|++|++++|.+++..+. .+.++++|++|++++|++.+..+..++.+++
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 125 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-AFSGLSSLQKLVAVETNLASLENFPIGHLKT 125 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTSCCCCSTTCSCTTCTT
T ss_pred HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHh-hhcCccccccccccccccccCCCcccccccc
Confidence 455666899999999999977777889999999999999999854444 4689999999999999997777667999999
Q ss_pred CCEEEcCCCcccc-CCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCC----CEEecccccccccCchHhhhCCCCC
Q 040468 96 LATLDVSNNFFQG-HIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQML----ARLDISYNQLTGEIPERMATGCFSL 170 (543)
Q Consensus 96 L~~L~ls~~~i~~-~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L----~~L~L~~~~~~~~~~~~~~~~~~~L 170 (543)
|++|++++|.+.. .+|..+.. +++|++|++++|.+++..+..+..+++| +++++++|.+. .++...+... +|
T Consensus 126 L~~L~L~~n~l~~~~lp~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~-~~~~~~~~~~-~L 202 (570)
T 2z63_A 126 LKELNVAHNLIQSFKLPEYFSN-LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI-RL 202 (570)
T ss_dssp CCEEECCSSCCCCCCCCGGGGG-CTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC-EECTTTTTTC-EE
T ss_pred ccEEecCCCccceecChhhhcc-cCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCce-ecCHHHhccC-cc
Confidence 9999999999884 46777777 8999999999999987777788888888 89999999887 4444444422 56
Q ss_pred CEEEccCCc----------------------------------------------------------CCCcCcccccCCC
Q 040468 171 EILALSNNS----------------------------------------------------------LQGHIFSKKFSLT 192 (543)
Q Consensus 171 ~~L~l~~n~----------------------------------------------------------~~~~~~~~l~~l~ 192 (543)
+.|++++|. +.+..+..+..++
T Consensus 203 ~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~ 282 (570)
T 2z63_A 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282 (570)
T ss_dssp EEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGT
T ss_pred eeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcC
Confidence 666665541 1122233445567
Q ss_pred CcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEcc
Q 040468 193 NLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLS 272 (543)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 272 (543)
+|+.|++.++.+. ..|..+..+ +|++|++++|.+. ..|. ..+++|+.+++++|.+....+. ..+++|+.|+++
T Consensus 283 ~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~ 355 (570)
T 2z63_A 283 NVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLS 355 (570)
T ss_dssp TCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECC
T ss_pred cccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCc
Confidence 7888888777776 456556666 7777777777766 3332 3456666666666665544332 455666666666
Q ss_pred CCcCccCC---CCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccC-ccCCCCCCCCEEEccCcccc
Q 040468 273 NNTIFGTL---PSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIP-NRIDRLPQLSYLLLANNYIE 348 (543)
Q Consensus 273 ~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~l~~~~~L~~L~l~~n~i~ 348 (543)
+|.+.+.. ..+..+++|+.|++++|.+.+.... +..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.
T Consensus 356 ~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 434 (570)
T 2z63_A 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434 (570)
T ss_dssp SSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCE
T ss_pred CCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccc
Confidence 66555331 1122355666666666666544433 5556666666666666654333 34556666666666666665
Q ss_pred cccchhhhCCCCCCEEeCCCCccc-ccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCC
Q 040468 349 GEIPVQLCQLKEVQLIDLSHNNLS-GHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRG 427 (543)
Q Consensus 349 ~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (543)
+..+..+.++++|++|++++|.+. +.+|..+..++... ......+
T Consensus 435 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~-----------------~L~l~~n----------------- 480 (570)
T 2z63_A 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT-----------------FLDLSQC----------------- 480 (570)
T ss_dssp ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC-----------------EEECTTS-----------------
T ss_pred ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCC-----------------EEECCCC-----------------
Confidence 555555666666666666666654 23443333322111 0000000
Q ss_pred CcccccccCCCCCCCCCccceeeeccCCcccc--cccccCceeEEEcccCccccccChhhhcccccCeeeCcCCcccccc
Q 040468 428 YPYALDYVGSRTPPMGKEETIQFTTKNMSYYY--QGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTI 505 (543)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~ 505 (543)
.+.... ....+++|++|++++|++++..|..+..+++|++|++++|++++..
T Consensus 481 --------------------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 481 --------------------------QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp --------------------------CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred --------------------------ccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCC
Confidence 000000 0011679999999999999766778999999999999999999776
Q ss_pred C
Q 040468 506 P 506 (543)
Q Consensus 506 ~ 506 (543)
|
T Consensus 535 ~ 535 (570)
T 2z63_A 535 P 535 (570)
T ss_dssp T
T ss_pred c
Confidence 5
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.5e-44 Score=378.45 Aligned_cols=414 Identities=19% Similarity=0.268 Sum_probs=340.2
Q ss_pred CceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCccc------c------cCChhhhh---------------------
Q 040468 21 FQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLS------G------EFPNWLVE--------------------- 67 (543)
Q Consensus 21 ~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~------~------~~~~~~~~--------------------- 67 (543)
.+++.|+|+++++.|.+|..+.++++|++|+|++|.+. + .+|.....
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 37999999999999999999999999999999999651 1 11111000
Q ss_pred ------------------cCCCCcEEEcc--CCcccccCCCCCcCCCCCCEEEcCCCccccC-----------------C
Q 040468 68 ------------------NNTNLETLLLA--NNSLFGSFRMPIHSHQKLATLDVSNNFFQGH-----------------I 110 (543)
Q Consensus 68 ------------------~l~~L~~L~L~--~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~-----------------~ 110 (543)
....++.+.+. +|++++ +|..+.++++|++|++++|.+++. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 00112222222 456767 788899999999999999999864 8
Q ss_pred chhhh--cCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEeccccc-ccc-cCchHhhh-----CCCCCCEEEccCCcCC
Q 040468 111 PVEIG--TYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQ-LTG-EIPERMAT-----GCFSLEILALSNNSLQ 181 (543)
Q Consensus 111 ~~~~~--~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~-~~~-~~~~~~~~-----~~~~L~~L~l~~n~~~ 181 (543)
|..+. . +++|++|++++|.+.+.+|..+.++++|++|++++|. +++ .+|..+.. .+++|++|++++|.+.
T Consensus 240 p~~l~~~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 240 TEDLKWDN-LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TSCCCGGG-CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred chhhhhcc-cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 88887 6 8999999999999998999999999999999999998 886 67877654 2389999999999998
Q ss_pred CcCcc--cccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCC-CcEEEccCCcccccCcc
Q 040468 182 GHIFS--KKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSF-LVDIIMPNNNLEGLIPI 258 (543)
Q Consensus 182 ~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~ 258 (543)
..+. .+..+++|+.|++++|.+.+.+| .+..+++|+.|++++|.+. ..|..+..+++ |+.|++++|.+. .+|.
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~ 394 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPN 394 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccch
Confidence 5666 78999999999999999987778 8889999999999999988 77888899999 999999999998 5576
Q ss_pred cccCCC--CCcEEEccCCcCccCCCCCC--------CcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccC
Q 040468 259 EFCQLR--FLRILDLSNNTIFGTLPSCF--------SPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIP 328 (543)
Q Consensus 259 ~l~~l~--~L~~L~l~~~~~~~~~~~~~--------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 328 (543)
.+.... +|+.|++++|.+.+..+..+ ..++|+.|++++|.++..+...+..+++|++|++++|.++ .+|
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~ 473 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIP 473 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCC
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcC
Confidence 766544 89999999999987655433 3568999999999998666556667899999999999999 555
Q ss_pred cc-CCCC-------CCCCEEEccCcccccccchhhh--CCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCC
Q 040468 329 NR-IDRL-------PQLSYLLLANNYIEGEIPVQLC--QLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSS 398 (543)
Q Consensus 329 ~~-l~~~-------~~L~~L~l~~n~i~~~~~~~l~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (543)
.. +... ++|+.|++++|+++ .+|..+. .+++|+.|++++|++.+ +|..+..
T Consensus 474 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~----------------- 534 (636)
T 4eco_A 474 KNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLN----------------- 534 (636)
T ss_dssp SSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGG-----------------
T ss_pred HHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhc-----------------
Confidence 43 3333 28999999999998 7787776 89999999999999975 6655443
Q ss_pred CCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEc------
Q 040468 399 CGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDL------ 472 (543)
Q Consensus 399 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l------ 472 (543)
+++|++|++
T Consensus 535 -----------------------------------------------------------------l~~L~~L~Ls~N~~l 549 (636)
T 4eco_A 535 -----------------------------------------------------------------SSTLKGFGIRNQRDA 549 (636)
T ss_dssp -----------------------------------------------------------------CSSCCEEECCSCBCT
T ss_pred -----------------------------------------------------------------CCCCCEEECCCCccc
Confidence 568999999
Q ss_pred ccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCccc
Q 040468 473 SCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK 528 (543)
Q Consensus 473 s~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~ 528 (543)
++|++.+.+|..+..+++|++|+|++|.++ .+|..+. ++|+.|++++|++...
T Consensus 550 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 550 QGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEE
T ss_pred ccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccc
Confidence 457778789999999999999999999995 7787766 8999999999988753
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-42 Score=374.43 Aligned_cols=419 Identities=19% Similarity=0.213 Sum_probs=339.2
Q ss_pred CceeEEEeeCCCCCCCcchhccCCCCCCEEec-cCCcccccCChhhh---------------------------------
Q 040468 21 FQLTSISLSGYIDGGTFPKFLYHQHDLKNANL-SHLNLSGEFPNWLV--------------------------------- 66 (543)
Q Consensus 21 ~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l-~~~~~~~~~~~~~~--------------------------------- 66 (543)
.+++.|+|+++++.|.+|..+.++++|++|+| ++|.+.+..+....
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 47999999999999999999999999999999 88776654221100
Q ss_pred -----------------hcCCCCcEEEccC--CcccccCCCCCcCCCCCCEEEcCCCcccc-----------------CC
Q 040468 67 -----------------ENNTNLETLLLAN--NSLFGSFRMPIHSHQKLATLDVSNNFFQG-----------------HI 110 (543)
Q Consensus 67 -----------------~~l~~L~~L~L~~--~~~~~~~~~~~~~~~~L~~L~ls~~~i~~-----------------~~ 110 (543)
.....++.+.+.. |++++ +|..+.++++|++|++++|.+++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0111233333333 56666 78889999999999999999986 28
Q ss_pred chhhh-cCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEeccccc-ccc-cCchHhhh------CCCCCCEEEccCCcCC
Q 040468 111 PVEIG-TYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQ-LTG-EIPERMAT------GCFSLEILALSNNSLQ 181 (543)
Q Consensus 111 ~~~~~-~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~-~~~-~~~~~~~~------~~~~L~~L~l~~n~~~ 181 (543)
|..+. ..+++|++|++++|.+.+.+|..+.++++|++|++++|. +.+ .+|..+.. .+++|++|++++|.+.
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 88875 238999999999999888999999999999999999998 776 57765543 3459999999999998
Q ss_pred CcCcc--cccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCC-CcEEEccCCcccccCcc
Q 040468 182 GHIFS--KKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSF-LVDIIMPNNNLEGLIPI 258 (543)
Q Consensus 182 ~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~ 258 (543)
..+. .+..+++|+.|++++|.+. .+| .+..+++|+.|++++|.+. ..|..+..+++ |+.|++++|.+. .+|.
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~ 636 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN 636 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence 5666 7899999999999999998 777 7889999999999999998 77888888998 999999999988 5577
Q ss_pred cccCCC--CCcEEEccCCcCccCCCCCC------CcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCcc
Q 040468 259 EFCQLR--FLRILDLSNNTIFGTLPSCF------SPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNR 330 (543)
Q Consensus 259 ~l~~l~--~L~~L~l~~~~~~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 330 (543)
.+...+ +|+.|++++|.+.+.++.+. ..++|+.|++++|.++..+...+..+++|+.|++++|+++ .+|..
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~ 715 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPEN 715 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTT
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChH
Confidence 776654 49999999999987655433 3468999999999998665555667899999999999998 55554
Q ss_pred CCC--------CCCCCEEEccCcccccccchhhh--CCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCC
Q 040468 331 IDR--------LPQLSYLLLANNYIEGEIPVQLC--QLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCG 400 (543)
Q Consensus 331 l~~--------~~~L~~L~l~~n~i~~~~~~~l~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 400 (543)
+.. +++|+.|++++|+++ .+|..+. .+++|+.|++++|++.+ +|..+..
T Consensus 716 ~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~------------------- 774 (876)
T 4ecn_A 716 SLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLN------------------- 774 (876)
T ss_dssp SSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGG-------------------
T ss_pred HhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhc-------------------
Confidence 333 238999999999998 7788776 89999999999999975 5554432
Q ss_pred CCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEccc------
Q 040468 401 RASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSC------ 474 (543)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~------ 474 (543)
+++|+.|+|++
T Consensus 775 ---------------------------------------------------------------L~~L~~L~Ls~N~~ls~ 791 (876)
T 4ecn_A 775 ---------------------------------------------------------------SSQLKAFGIRHQRDAEG 791 (876)
T ss_dssp ---------------------------------------------------------------CTTCCEEECCCCBCTTC
T ss_pred ---------------------------------------------------------------CCCCCEEECCCCCCccc
Confidence 56899999976
Q ss_pred CccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcccCCccc
Q 040468 475 NKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQL 533 (543)
Q Consensus 475 n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~ 533 (543)
|.+.+.+|..+..+++|++|+|++|.+ +.+|..+. ++|+.|+|++|++...-+..+
T Consensus 792 N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~ 847 (876)
T 4ecn_A 792 NRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSV 847 (876)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGG
T ss_pred ccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHc
Confidence 777778899999999999999999999 47887765 699999999999875544433
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7.8e-41 Score=366.17 Aligned_cols=489 Identities=20% Similarity=0.153 Sum_probs=362.9
Q ss_pred eEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCccccc-CCCCCcCCCCCCEEEcC
Q 040468 24 TSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGS-FRMPIHSHQKLATLDVS 102 (543)
Q Consensus 24 ~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~ls 102 (543)
+..+.++++++ .+|. ..+++++|+|++|.+++..+.. +.++++|++|++++|...+. .+.+|.++++|++|+++
T Consensus 7 ~~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~-~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASS-FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSS-CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhH-CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 46778888888 4564 5589999999999998665655 58999999999999965444 48889999999999999
Q ss_pred CCccccCCchhhhcCCCCCcEEEcCCCcCccCCchh--hcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcC
Q 040468 103 NNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSS--FADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSL 180 (543)
Q Consensus 103 ~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~--l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 180 (543)
+|.+.+..|..+.. +++|++|++++|.+++..+.. +.++++|++|++++|.+.+..+...+..+++|++|++++|.+
T Consensus 82 ~N~l~~~~p~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 82 SSKIYFLHPDAFQG-LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp TCCCCEECTTSSCS-CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred CCcCcccCHhHccC-CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 99998544555554 999999999999998756654 899999999999999998555555667799999999999999
Q ss_pred CCcCcccccCC--CCcCEEeCCCCccCccCchhhhcCCC------CCEEEccCCcCCCcccccccC---CCCCcEEEccC
Q 040468 181 QGHIFSKKFSL--TNLMTLQLDGNNFSGEIPESLSKCRR------LGGLYLSDNHLSGEIPRWLGN---LSFLVDIIMPN 249 (543)
Q Consensus 181 ~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~l~~~~~------L~~L~l~~~~~~~~~~~~l~~---~~~L~~L~l~~ 249 (543)
.+..+..+..+ ++|+.|++++|.+.+..+..+..+++ |+.|++++|.+....+..+.. ...+..+.+..
T Consensus 161 ~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~ 240 (844)
T 3j0a_A 161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240 (844)
T ss_dssp CCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred CeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence 88777777766 89999999999988776666655554 999999999887666655543 35677887763
Q ss_pred Cc---------ccccCcccccC--CCCCcEEEccCCcCccCCCCCCC-cccccEEEcCCCccccccCCCCCCCCCccEEE
Q 040468 250 NN---------LEGLIPIEFCQ--LRFLRILDLSNNTIFGTLPSCFS-PAYIEQVHLSKNKIEGRLESVIPDSPNLVTLD 317 (543)
Q Consensus 250 ~~---------~~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 317 (543)
+. +.+.....+.. .++|+.|++++|.+.+..+..+. +++|+.|++++|.+++..+..|..+++|++|+
T Consensus 241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 320 (844)
T 3j0a_A 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN 320 (844)
T ss_dssp SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEE
T ss_pred ccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEE
Confidence 32 22222333433 36899999999999877666554 89999999999999988888899999999999
Q ss_pred ccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCC--CcccCCCCCCCCCCCCCC
Q 040468 318 LSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPP--CLVNTSLSEGHDEPVAPT 395 (543)
Q Consensus 318 l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~--~~~~~~~~~~~~~~~~~~ 395 (543)
+++|.+++..+..+..+++|+.|++++|++....+..|..+++|++|++++|.+.+ ++. .+..+.+..+......
T Consensus 321 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~L~~L~l~~N~l~~l~-- 397 (844)
T 3j0a_A 321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IHFIPSIPDIFLSGNKLVTLP-- 397 (844)
T ss_dssp EESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CSSCCSCSEEEEESCCCCCCC--
T ss_pred CCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-ccCCCCcchhccCCCCccccc--
Confidence 99999997888999999999999999999987777789999999999999999863 322 1221111111111000
Q ss_pred CCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCccccc---ccccCceeEEEc
Q 040468 396 SSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQ---GRILTSMFGIDL 472 (543)
Q Consensus 396 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~~L~l 472 (543)
.....+.......+. ...... .+. ....+.++.+.+....+..... ...+++|++|++
T Consensus 398 -~~~~~l~~L~ls~N~---------l~~l~~--~~~-------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L 458 (844)
T 3j0a_A 398 -KINLTANLIHLSENR---------LENLDI--LYF-------LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL 458 (844)
T ss_dssp -CCCTTCCEEECCSCC---------CCSSTT--HHH-------HTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEE
T ss_pred -ccccccceeecccCc---------cccCch--hhh-------hhcCCccceeeCCCCcccccccccccccCCccccccC
Confidence 001111111111110 000000 000 0022334444444444332111 122689999999
Q ss_pred ccCcccc-----ccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcccCCccccccCcCCcC
Q 040468 473 SCNKLTG-----EIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVF 542 (543)
Q Consensus 473 s~n~l~~-----~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l 542 (543)
++|.++. ..+..|..+++|++|+|++|.+++..|..|..+++|+.|++++|++++..+..+. ++|+.|
T Consensus 459 s~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L 531 (844)
T 3j0a_A 459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEIL 531 (844)
T ss_dssp ESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEE
T ss_pred CCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEE
Confidence 9999872 3345688999999999999999988898999999999999999999977666655 666654
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.4e-41 Score=351.53 Aligned_cols=428 Identities=20% Similarity=0.175 Sum_probs=256.4
Q ss_pred EEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCC
Q 040468 25 SISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNN 104 (543)
Q Consensus 25 ~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~ 104 (543)
+|++++++++ .+|..+. ++|++|++++|.+++ ++...+.++++|++|++++|++.+..|.+|.++++|++|++++|
T Consensus 4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYISE-LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCC-CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred eEecCCCCcc-ccccccc--ccccEEECCCCcccc-cChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 4445555444 2333222 455555555554442 22222344455555555555544444444455555555555555
Q ss_pred ccccCCchhhhcCCCCCcEEEcCCCcCcc-CCchhhcCCCCCCEEecccccccccCchHhhhCCCCC--CEEEccCCcC-
Q 040468 105 FFQGHIPVEIGTYLPGLMEFNLSRNAFNG-SIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSL--EILALSNNSL- 180 (543)
Q Consensus 105 ~i~~~~~~~~~~~l~~L~~L~L~~~~i~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L--~~L~l~~n~~- 180 (543)
.++ .+|.. .+++|++|++++|.+++ ..|..++++++|++|++++|.+.+ ..+..+++| ++|++++|.+
T Consensus 80 ~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 80 KLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETY 151 (520)
T ss_dssp CCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTT
T ss_pred cee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeeccccc
Confidence 444 34433 24455555555554443 234444555555555555544432 112223444 4555544444
Q ss_pred -CCcCcc--------------------------cccCCCCcCEEeCCCCc-------cCccCchhhhcCCCCCEEEccCC
Q 040468 181 -QGHIFS--------------------------KKFSLTNLMTLQLDGNN-------FSGEIPESLSKCRRLGGLYLSDN 226 (543)
Q Consensus 181 -~~~~~~--------------------------~l~~l~~L~~L~l~~~~-------~~~~~~~~l~~~~~L~~L~l~~~ 226 (543)
.+..+. .+..+++|+.+++++|. +.+..+ .+..+++|+.++++++
T Consensus 152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~ 230 (520)
T 2z7x_B 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNI 230 (520)
T ss_dssp TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEE
T ss_pred ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccc
Confidence 222222 33446667777776664 332222 4667777888887777
Q ss_pred cCCCcccccc---cCCCCCcEEEccCCcccccCcccc-----cCCCCCcEEEccCCcCccCCCCCC-C---cccccEEEc
Q 040468 227 HLSGEIPRWL---GNLSFLVDIIMPNNNLEGLIPIEF-----CQLRFLRILDLSNNTIFGTLPSCF-S---PAYIEQVHL 294 (543)
Q Consensus 227 ~~~~~~~~~l---~~~~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~~~~-~---~~~L~~L~l 294 (543)
.+....+..+ ...++|+.|++++|.+.+..|..+ ..+++|+.+++++|.+ ......+ . ..+++.|++
T Consensus 231 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l 309 (520)
T 2z7x_B 231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTV 309 (520)
T ss_dssp EEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEE
T ss_pred ccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEc
Confidence 6543221111 124588899999988887777777 7888888889888877 2221111 1 156888899
Q ss_pred CCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCccccc--ccchhhhCCCCCCEEeCCCCccc
Q 040468 295 SKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEG--EIPVQLCQLKEVQLIDLSHNNLS 372 (543)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~--~~~~~l~~l~~L~~L~l~~n~~~ 372 (543)
++|.+.... .+..+++|++|++++|.+++..|..+..+++|+.|++++|++++ .+|..+..+++|++|++++|.+.
T Consensus 310 ~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~ 387 (520)
T 2z7x_B 310 SGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387 (520)
T ss_dssp ESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCB
T ss_pred CCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCC
Confidence 888876432 12577889999999998887778888888899999999998885 45567888889999999998887
Q ss_pred ccCCCC-cccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeee
Q 040468 373 GHIPPC-LVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFT 451 (543)
Q Consensus 373 ~~~~~~-~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (543)
+.+|.. +..++ .++.+...
T Consensus 388 ~~l~~~~~~~l~------------------------------------------------------------~L~~L~Ls 407 (520)
T 2z7x_B 388 YDEKKGDCSWTK------------------------------------------------------------SLLSLNMS 407 (520)
T ss_dssp CCGGGCSCCCCT------------------------------------------------------------TCCEEECC
T ss_pred cccccchhccCc------------------------------------------------------------cCCEEECc
Confidence 545543 22111 01111111
Q ss_pred ccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcccC
Q 040468 452 TKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 529 (543)
Q Consensus 452 ~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~ 529 (543)
...+.........++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..+++|+.|++++|++.+..
T Consensus 408 ~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 408 SNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp SSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccC
Confidence 111111111111368999999999999 88888889999999999999999444344889999999999999998654
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2e-41 Score=354.74 Aligned_cols=463 Identities=17% Similarity=0.120 Sum_probs=306.0
Q ss_pred CceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEE
Q 040468 21 FQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLD 100 (543)
Q Consensus 21 ~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ 100 (543)
.+|++|++++|.+++..|..+.++++|++|++++|.+++..+.. +.++++|++|++++|++.+..+..++.+++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA-FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhh-ccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 37999999999999777788899999999999999998555544 58899999999999999877777789999999999
Q ss_pred cCCCcccc-CCchhhhcCCCCCcEEEcCCCc-CccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCC
Q 040468 101 VSNNFFQG-HIPVEIGTYLPGLMEFNLSRNA-FNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNN 178 (543)
Q Consensus 101 ls~~~i~~-~~~~~~~~~l~~L~~L~L~~~~-i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n 178 (543)
+++|.+++ ..+..+.. +++|++|++++|. +....+..+.++++|++|++++|.+.+..+..+. .+++|++|++++|
T Consensus 105 Ls~n~l~~~~~~~~~~~-l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n 182 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPN-LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK-SIRDIHHLTLHLS 182 (549)
T ss_dssp CTTCCCSSSCSSCSCTT-CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT-TCSEEEEEEEECS
T ss_pred CCCCcccccchhhhhhc-cCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh-ccccCceEecccC
Confidence 99999874 23444444 8999999999998 4433346788999999999999998855565444 4888889999888
Q ss_pred cCCCcCcccccCCCCcCEEeCCCCccCccC--c-hhhhcCCCCCEEEccCCcCCCccc----ccccCCCCCcEEEccCCc
Q 040468 179 SLQGHIFSKKFSLTNLMTLQLDGNNFSGEI--P-ESLSKCRRLGGLYLSDNHLSGEIP----RWLGNLSFLVDIIMPNNN 251 (543)
Q Consensus 179 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~-~~l~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~ 251 (543)
.+.......+..+++|++|++++|.+.+.. + .....+++|+.++++++.+....+ ..+..+++++.+++++|.
T Consensus 183 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262 (549)
T ss_dssp BSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred cccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence 876443333456888999999888877531 1 122446778888888877653222 334556778888888776
Q ss_pred ccccC------cccccCCCCCcEEEccCCcCccCCC--CC---C-CcccccEEEcCCCccccccCCCCCCCCCccEEEcc
Q 040468 252 LEGLI------PIEFCQLRFLRILDLSNNTIFGTLP--SC---F-SPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLS 319 (543)
Q Consensus 252 ~~~~~------~~~l~~l~~L~~L~l~~~~~~~~~~--~~---~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 319 (543)
+.+.. ...+..+++++.+++.++.+..... .. + ..++|+.|++++|.+...+...+..+++|++|+++
T Consensus 263 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls 342 (549)
T 2z81_A 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLS 342 (549)
T ss_dssp EECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECC
T ss_pred ccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEcc
Confidence 65421 1223455666667666665432110 00 0 03456666666666654333333456666666666
Q ss_pred ccccccccC---ccCCCCCCCCEEEccCcccccccc--hhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCC
Q 040468 320 YNCLHGSIP---NRIDRLPQLSYLLLANNYIEGEIP--VQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAP 394 (543)
Q Consensus 320 ~~~i~~~~~---~~l~~~~~L~~L~l~~n~i~~~~~--~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (543)
+|++++..| ..++.+++|+.|++++|++++..+ ..+..+++|++|++++|.+. .+|+.+..++..
T Consensus 343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L--------- 412 (549)
T 2z81_A 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM--------- 412 (549)
T ss_dssp SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTC---------
T ss_pred CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccc---------
Confidence 666665432 235566666666666666653321 34566666666666666665 344433222110
Q ss_pred CCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEccc
Q 040468 395 TSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSC 474 (543)
Q Consensus 395 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~ 474 (543)
.....+.+. . ..++... ...++.+......+.... ..+++|++|++++
T Consensus 413 --------~~L~Ls~N~---------l-----------~~l~~~~--~~~L~~L~Ls~N~l~~~~--~~l~~L~~L~Ls~ 460 (549)
T 2z81_A 413 --------RFLNLSSTG---------I-----------RVVKTCI--PQTLEVLDVSNNNLDSFS--LFLPRLQELYISR 460 (549)
T ss_dssp --------CEEECTTSC---------C-----------SCCCTTS--CTTCSEEECCSSCCSCCC--CCCTTCCEEECCS
T ss_pred --------cEEECCCCC---------c-----------ccccchh--cCCceEEECCCCChhhhc--ccCChhcEEECCC
Confidence 000000000 0 0000000 012222222222222211 1278999999999
Q ss_pred CccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcccCC
Q 040468 475 NKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 530 (543)
Q Consensus 475 n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~ 530 (543)
|+++ .+|. ...+++|++|+|++|++++..|..+..+++|+.|++++|++.+.+|
T Consensus 461 N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 461 NKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp SCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 9998 6776 4678999999999999998888889999999999999999987665
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.5e-41 Score=354.03 Aligned_cols=404 Identities=21% Similarity=0.303 Sum_probs=250.4
Q ss_pred CCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCccc------c------cCCCC---------------------C-
Q 040468 45 HDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLF------G------SFRMP---------------------I- 90 (543)
Q Consensus 45 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~------~------~~~~~---------------------~- 90 (543)
.+++.|+|+++.+.+.+|..+ .++++|++|+|++|.+. + .+|.. +
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l-~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAI-GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGG-GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcccCCcCChHH-hcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 588999999999998899775 89999999999999651 1 00000 0
Q ss_pred ------------------cCCCCCCEEEcC--CCccccCCchhhhcCCCCCcEEEcCCCcCccC----------------
Q 040468 91 ------------------HSHQKLATLDVS--NNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGS---------------- 134 (543)
Q Consensus 91 ------------------~~~~~L~~L~ls--~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~---------------- 134 (543)
.....++.+.+. .|.+++ +|..+.. +++|++|++++|.+++.
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~ 237 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhc-ccCCCEEECcCCccccccccccccccccchhcc
Confidence 000111111121 244553 5555555 56666666666666643
Q ss_pred -Cchhhc--CCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCc-CCC-cCcccccCC------CCcCEEeCCCCc
Q 040468 135 -IPSSFA--DMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNS-LQG-HIFSKKFSL------TNLMTLQLDGNN 203 (543)
Q Consensus 135 -~~~~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~-~~~~~l~~l------~~L~~L~l~~~~ 203 (543)
+|..+. ++++|++|++++|.+.+.+|..+. .+++|++|++++|+ +++ ..+..++.+ ++|+.|++++|.
T Consensus 238 ~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp HTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT-TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred cCchhhhhcccCCCCEEEecCCcCCccChHHHh-cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 555555 666666666666665555554433 36666666666665 554 444444443 566666666666
Q ss_pred cCccCch--hhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCC-CcEEEccCCcCccCC
Q 040468 204 FSGEIPE--SLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRF-LRILDLSNNTIFGTL 280 (543)
Q Consensus 204 ~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~ 280 (543)
++ .+|. .+..+++|+.|++++|.+....| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+.. +
T Consensus 317 l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~-l 392 (636)
T 4eco_A 317 LK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY-I 392 (636)
T ss_dssp CS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS-C
T ss_pred CC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcc-c
Confidence 65 5555 56666666666666666554444 5555666666666666665 34455555565 6666666666553 2
Q ss_pred CCCCC---cccccEEEcCCCccccccCCCCC-------CCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccc
Q 040468 281 PSCFS---PAYIEQVHLSKNKIEGRLESVIP-------DSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGE 350 (543)
Q Consensus 281 ~~~~~---~~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~ 350 (543)
+..+. +++|+.|++++|.+.+..+..+. .+++|++|++++|.++...+..+..+++|+.|++++|+++ .
T Consensus 393 p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~ 471 (636)
T 4eco_A 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-E 471 (636)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-B
T ss_pred chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-C
Confidence 32222 22566666666666555544444 4556666666666666322233444566666666666665 3
Q ss_pred cchh-hhCC-------CCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCC
Q 040468 351 IPVQ-LCQL-------KEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSS 422 (543)
Q Consensus 351 ~~~~-l~~l-------~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ 422 (543)
+|.. +... ++|++|++++|.+. .+|..+..
T Consensus 472 i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~----------------------------------------- 509 (636)
T 4eco_A 472 IPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA----------------------------------------- 509 (636)
T ss_dssp CCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST-----------------------------------------
T ss_pred cCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh-----------------------------------------
Confidence 3332 2222 15666666666654 33332210
Q ss_pred CCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeC------
Q 040468 423 SCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNL------ 496 (543)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l------ 496 (543)
..+++|++|+|++|++++ +|..+..+++|++|+|
T Consensus 510 ---------------------------------------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~l 549 (636)
T 4eco_A 510 ---------------------------------------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDA 549 (636)
T ss_dssp ---------------------------------------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCT
T ss_pred ---------------------------------------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCccc
Confidence 016799999999999995 8999999999999999
Q ss_pred cCCccccccChhhhccCCCCeeeCCCCcCcccCCccccccCcCCcC
Q 040468 497 SHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVF 542 (543)
Q Consensus 497 s~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l 542 (543)
++|.+.+.+|.+|..+++|+.|++++|++ +.+|..+. ++|+.|
T Consensus 550 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L 592 (636)
T 4eco_A 550 QGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVL 592 (636)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEE
T ss_pred ccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEE
Confidence 56778889999999999999999999999 57787654 677665
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.6e-39 Score=349.74 Aligned_cols=402 Identities=22% Similarity=0.299 Sum_probs=301.2
Q ss_pred CCCCEEeccCCcccccCChhhhhcCCCCcEEEc-cCCcccccCCCCC---------------------------------
Q 040468 45 HDLKNANLSHLNLSGEFPNWLVENNTNLETLLL-ANNSLFGSFRMPI--------------------------------- 90 (543)
Q Consensus 45 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~~~~~--------------------------------- 90 (543)
.+++.|+|+++.+.+.+|..+ .++++|++|+| ++|.+.+..+...
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l-~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAI-GQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGG-GGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCchHH-hccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 679999999999999999875 89999999999 7776654422110
Q ss_pred ------------------cCCCCCCEEEcCC--CccccCCchhhhcCCCCCcEEEcCCCcCcc-----------------
Q 040468 91 ------------------HSHQKLATLDVSN--NFFQGHIPVEIGTYLPGLMEFNLSRNAFNG----------------- 133 (543)
Q Consensus 91 ------------------~~~~~L~~L~ls~--~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~----------------- 133 (543)
.....++.+.+.. |.+++ +|..+.. +++|++|++++|.+++
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g 479 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ 479 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccc
Confidence 1112233333333 56664 7877776 8888888888888886
Q ss_pred CCchhhc--CCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCc-CCC-cCccccc-------CCCCcCEEeCCCC
Q 040468 134 SIPSSFA--DMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNS-LQG-HIFSKKF-------SLTNLMTLQLDGN 202 (543)
Q Consensus 134 ~~~~~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~-~~~~~l~-------~l~~L~~L~l~~~ 202 (543)
.+|..++ ++++|++|++++|.+.+.+|..+. .+++|++|++++|+ +.+ ..+..++ .+++|+.|++++|
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~-~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG-GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred cCChhhhhccCCCCCEEECcCCCCCccChHHHh-CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 2777766 888888888888887777775554 48888888888887 665 4454443 3458888888888
Q ss_pred ccCccCch--hhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCC-CcEEEccCCcCccC
Q 040468 203 NFSGEIPE--SLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRF-LRILDLSNNTIFGT 279 (543)
Q Consensus 203 ~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~ 279 (543)
.+. .+|. .+..+++|+.|++++|.+. .+| .++.+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+..
T Consensus 559 ~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~- 633 (876)
T 4ecn_A 559 NLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY- 633 (876)
T ss_dssp CCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCS-
T ss_pred cCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCc-
Confidence 888 6776 7888888888888888887 666 7888888888888888888 56767777887 8888888888874
Q ss_pred CCCCCC-c--ccccEEEcCCCccccccCCCC---C--CCCCccEEEccccccccccCcc-CCCCCCCCEEEccCcccccc
Q 040468 280 LPSCFS-P--AYIEQVHLSKNKIEGRLESVI---P--DSPNLVTLDLSYNCLHGSIPNR-IDRLPQLSYLLLANNYIEGE 350 (543)
Q Consensus 280 ~~~~~~-~--~~L~~L~l~~~~~~~~~~~~~---~--~~~~L~~L~l~~~~i~~~~~~~-l~~~~~L~~L~l~~n~i~~~ 350 (543)
++..+. . ++|+.|++++|.+.+..+... . ..++|+.|++++|.++ .+|.. +..+++|+.|++++|+++ .
T Consensus 634 lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ 711 (876)
T 4ecn_A 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-S 711 (876)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-C
T ss_pred CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-c
Confidence 444333 2 348888888888876543221 1 3457888888888888 44544 457888888888888887 5
Q ss_pred cchhhhC--------CCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCC
Q 040468 351 IPVQLCQ--------LKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSS 422 (543)
Q Consensus 351 ~~~~l~~--------l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ 422 (543)
+|..+.. +++|+.|++++|.+. .+|..+...
T Consensus 712 ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~---------------------------------------- 750 (876)
T 4ecn_A 712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRAT---------------------------------------- 750 (876)
T ss_dssp CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTT----------------------------------------
T ss_pred cChHHhccccccccccCCccEEECCCCCCc-cchHHhhhc----------------------------------------
Confidence 5544332 238888888888876 455433200
Q ss_pred CCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcC----
Q 040468 423 SCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSH---- 498 (543)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~---- 498 (543)
.+++|+.|+|++|++++ +|..+..+++|+.|+|++
T Consensus 751 ----------------------------------------~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~l 789 (876)
T 4ecn_A 751 ----------------------------------------TLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDA 789 (876)
T ss_dssp ----------------------------------------TCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCT
T ss_pred ----------------------------------------cCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCc
Confidence 16799999999999994 899999999999999976
Q ss_pred --CccccccChhhhccCCCCeeeCCCCcCcccCCccccccCcCCcC
Q 040468 499 --NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVF 542 (543)
Q Consensus 499 --n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l 542 (543)
|.+.+.+|.+|..+++|+.|+|++|++ +.+|..+. ++|+.|
T Consensus 790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~L 832 (876)
T 4ecn_A 790 EGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYIL 832 (876)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEE
T ss_pred ccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEE
Confidence 778889999999999999999999999 58887654 577665
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.4e-39 Score=340.83 Aligned_cols=468 Identities=18% Similarity=0.124 Sum_probs=350.9
Q ss_pred EEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCc
Q 040468 26 ISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNF 105 (543)
Q Consensus 26 L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~ 105 (543)
.+.++++++ .+|..+. ++|++|++++|.+++..+.. +.++++|++|++++|++.+..+.+|..+++|++|++++|.
T Consensus 10 c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 85 (549)
T 2z81_A 10 CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGD-LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85 (549)
T ss_dssp EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSST-TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCccc-cccccCC--CCccEEECcCCccCccChhh-hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc
Confidence 577777777 5565443 89999999999998655555 5899999999999999998888999999999999999999
Q ss_pred cccCCchhhhcCCCCCcEEEcCCCcCcc-CCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcC
Q 040468 106 FQGHIPVEIGTYLPGLMEFNLSRNAFNG-SIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHI 184 (543)
Q Consensus 106 i~~~~~~~~~~~l~~L~~L~L~~~~i~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 184 (543)
+. .++...+..+++|++|++++|.+++ ..+..+.++++|++|++++|...+.++...+..+++|++|++++|.+.+..
T Consensus 86 l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 164 (549)
T 2z81_A 86 LS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 164 (549)
T ss_dssp CC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred cC-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccC
Confidence 99 5555544459999999999999985 356789999999999999998555777666777999999999999999888
Q ss_pred cccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcc--c-ccccCCCCCcEEEccCCcccccCc----
Q 040468 185 FSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEI--P-RWLGNLSFLVDIIMPNNNLEGLIP---- 257 (543)
Q Consensus 185 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~-~~l~~~~~L~~L~l~~~~~~~~~~---- 257 (543)
+..+..+++|+.|++..+.+.......+..+++|++|++++|.+.... + .....+++|+.+++++|.+.+..+
T Consensus 165 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 244 (549)
T 2z81_A 165 SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244 (549)
T ss_dssp TTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHH
T ss_pred hhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHH
Confidence 889999999999999999876332333456899999999999987532 1 223467899999999998875433
Q ss_pred ccccCCCCCcEEEccCCcCccCCC-------CCCCcccccEEEcCCCccccccC-----CCCCCCCCccEEEcccccccc
Q 040468 258 IEFCQLRFLRILDLSNNTIFGTLP-------SCFSPAYIEQVHLSKNKIEGRLE-----SVIPDSPNLVTLDLSYNCLHG 325 (543)
Q Consensus 258 ~~l~~l~~L~~L~l~~~~~~~~~~-------~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~i~~ 325 (543)
..+..+++|+.+++++|.+.+... .....++++.+++.++.+..... ..+...++|++|++++|.+.
T Consensus 245 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~- 323 (549)
T 2z81_A 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF- 323 (549)
T ss_dssp GGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-
T ss_pred HHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-
Confidence 334567899999999998765321 12236789999999887754321 11123478999999999998
Q ss_pred ccCccC-CCCCCCCEEEccCcccccccch---hhhCCCCCCEEeCCCCcccccCC--CCcccCCCCCCCCCCCCCCCCCC
Q 040468 326 SIPNRI-DRLPQLSYLLLANNYIEGEIPV---QLCQLKEVQLIDLSHNNLSGHIP--PCLVNTSLSEGHDEPVAPTSSSC 399 (543)
Q Consensus 326 ~~~~~l-~~~~~L~~L~l~~n~i~~~~~~---~l~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~c 399 (543)
.+|..+ ..+++|+.|++++|++++..+. .+..+++|++|++++|.+.+..+ ..+..++
T Consensus 324 ~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~---------------- 387 (549)
T 2z81_A 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK---------------- 387 (549)
T ss_dssp CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCT----------------
T ss_pred cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCC----------------
Confidence 666665 5799999999999999876543 36789999999999999864211 1222222
Q ss_pred CCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCcccc
Q 040468 400 GRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTG 479 (543)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~ 479 (543)
.+.....+.+.- ..++........++.+......+... ....+++|++|++++|++++
T Consensus 388 -~L~~L~Ls~N~l--------------------~~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~~~~L~~L~Ls~N~l~~ 445 (549)
T 2z81_A 388 -NLTSLDISRNTF--------------------HPMPDSCQWPEKMRFLNLSSTGIRVV-KTCIPQTLEVLDVSNNNLDS 445 (549)
T ss_dssp -TCCEEECTTCCC--------------------CCCCSCCCCCTTCCEEECTTSCCSCC-CTTSCTTCSEEECCSSCCSC
T ss_pred -CCCEEECCCCCC--------------------ccCChhhcccccccEEECCCCCcccc-cchhcCCceEEECCCCChhh
Confidence 111122222110 00111111223334444444333221 22235799999999999994
Q ss_pred ccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcccCCccccccCcCCcCC
Q 040468 480 EIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVFR 543 (543)
Q Consensus 480 ~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~ 543 (543)
.+ ..+++|++|+|++|+++ .+|. ...+++|+.|++++|++++..|+.+..+++|++|+
T Consensus 446 -~~---~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 503 (549)
T 2z81_A 446 -FS---LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIW 503 (549)
T ss_dssp -CC---CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEE
T ss_pred -hc---ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEE
Confidence 33 57899999999999999 6675 47899999999999999988888899999998764
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7.7e-39 Score=327.11 Aligned_cols=390 Identities=16% Similarity=0.117 Sum_probs=214.7
Q ss_pred eEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccc-cCCCCCcCCCCCCEEEcC
Q 040468 24 TSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFG-SFRMPIHSHQKLATLDVS 102 (543)
Q Consensus 24 ~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~~~~~~~L~~L~ls 102 (543)
+.++.++++++ .+|. -.++|++|++++|.+++..+.. +.++++|++|++++|.+.+ ..+.+|..+++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~---l~~~l~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE---LPAHVNYVDLSLNSIAELNETS-FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC---CCTTCCEEECCSSCCCEECTTT-TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC---CCCccCEEEecCCccCcCChhH-hccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 34555555555 3443 2267777777777776444444 4677777777777776643 335567777777777777
Q ss_pred CCccccCCchhhhcCCCCCcEEEcCCCcCccCCchh--hcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcC
Q 040468 103 NNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSS--FADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSL 180 (543)
Q Consensus 103 ~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~--l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 180 (543)
+|.+.+..|..+.. +++|++|++++|.+++..+.. +.++++|++|++++|.+.+..|..++..+++|++|++++|.+
T Consensus 88 ~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 88 YNQFLQLETGAFNG-LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TCTTCEECTTTTTT-CTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCccCccChhhccC-cccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 77776333444444 677777777777776433333 666777777777777776444555455567777777777766
Q ss_pred CCcCcccccCC--CCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcc
Q 040468 181 QGHIFSKKFSL--TNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPI 258 (543)
Q Consensus 181 ~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 258 (543)
.+..+..+..+ ++++.+++.++.+....+..+.. .....+..+++|+.|++++|.+.+..+.
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~----------------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 230 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW----------------EKCGNPFKNTSITTLDLSGNGFKESMAK 230 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH----------------HHHCCTTTTCEEEEEECTTSCCCHHHHH
T ss_pred cccChhhhhccccccccccccccCcccccchhhccc----------------cccccccccceeeeEecCCCcccccchh
Confidence 65555444433 45666666665554322211100 0001122334555555555555544333
Q ss_pred cccC---CCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCC--CCCCccEEEccccccccccCccCCC
Q 040468 259 EFCQ---LRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIP--DSPNLVTLDLSYNCLHGSIPNRIDR 333 (543)
Q Consensus 259 ~l~~---l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~l~~ 333 (543)
.+.. .++|+.+++++|...+...... .+.+.....+. ..++|++|++++|.+++..+..+..
T Consensus 231 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 297 (455)
T 3v47_A 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHT-------------NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH 297 (455)
T ss_dssp HHHHHTTTCCEEEEECTTCTTTSCCTTCC-------------SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT
T ss_pred hhhccccccceeeEeeccccccccccchh-------------hhccCcccccccccccCceEEEecCccccccchhhccc
Confidence 3322 2455666665554332211110 00000001111 1245666666666666555555666
Q ss_pred CCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 040468 334 LPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTA 413 (543)
Q Consensus 334 ~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 413 (543)
+++|+.|++++|++++..+..|..+++|++|++++|.+.+..|..+..
T Consensus 298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------------------------------- 345 (455)
T 3v47_A 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN-------------------------------- 345 (455)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTT--------------------------------
T ss_pred CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcC--------------------------------
Confidence 666666666666666555555666666666666666554332222221
Q ss_pred cCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCe
Q 040468 414 LNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHA 493 (543)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~ 493 (543)
+++|++|++++|++++..|..+..+++|++
T Consensus 346 --------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 375 (455)
T 3v47_A 346 --------------------------------------------------LDKLEVLDLSYNHIRALGDQSFLGLPNLKE 375 (455)
T ss_dssp --------------------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred --------------------------------------------------cccCCEEECCCCcccccChhhccccccccE
Confidence 345666666666666545556666666666
Q ss_pred eeCcCCccccccChhhhccCCCCeeeCCCCcCcccCC
Q 040468 494 LNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 530 (543)
Q Consensus 494 L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~ 530 (543)
|+|++|++++..+..+..+++|+.|++++|++++.+|
T Consensus 376 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 376 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred EECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 6666666665555555666666666666666665554
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.2e-39 Score=334.67 Aligned_cols=416 Identities=20% Similarity=0.187 Sum_probs=310.0
Q ss_pred CEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcC
Q 040468 48 KNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLS 127 (543)
Q Consensus 48 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~ 127 (543)
++++++++.++ .+|..+. ++|++|++++|++.+..+.++..+++|++|++++|.+++..|..+.. +++|++|+++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF-NQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTT-CTTCCEEECC
T ss_pred ceEecCCCCcc-ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhc-ccCCCEEecC
Confidence 68999999998 7887653 89999999999998877788999999999999999998444555554 9999999999
Q ss_pred CCcCccCCchhhcCCCCCCEEecccccccc-cCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCc--CEEeCCCCcc
Q 040468 128 RNAFNGSIPSSFADMQMLARLDISYNQLTG-EIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNL--MTLQLDGNNF 204 (543)
Q Consensus 128 ~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~l~~~~~ 204 (543)
+|.++ .+|.. .+++|++|++++|.+.+ .+|.. +..+++|++|++++|.+.. ..+..+++| +.|++.+|.+
T Consensus 78 ~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 78 HNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp SSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred CCcee-ecCcc--ccCCccEEeccCCccccccchhh-hccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence 99998 45655 78999999999999984 24544 4559999999999999875 345667777 9999999988
Q ss_pred --CccCchhhhc--------------------------CCCCCEEEccCCc-------CCCcccccccCCCCCcEEEccC
Q 040468 205 --SGEIPESLSK--------------------------CRRLGGLYLSDNH-------LSGEIPRWLGNLSFLVDIIMPN 249 (543)
Q Consensus 205 --~~~~~~~l~~--------------------------~~~L~~L~l~~~~-------~~~~~~~~l~~~~~L~~L~l~~ 249 (543)
.+..|..+.. +++|+.+++++|. +....+ .+..+++|+.+++.+
T Consensus 151 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~ 229 (520)
T 2z7x_B 151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNN 229 (520)
T ss_dssp TTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEE
T ss_pred cccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccc
Confidence 5555555544 4556666666654 222222 466777788888877
Q ss_pred CcccccCccccc---CCCCCcEEEccCCcCccCCCCC------CCcccccEEEcCCCccccccCCCCCCC---CCccEEE
Q 040468 250 NNLEGLIPIEFC---QLRFLRILDLSNNTIFGTLPSC------FSPAYIEQVHLSKNKIEGRLESVIPDS---PNLVTLD 317 (543)
Q Consensus 250 ~~~~~~~~~~l~---~l~~L~~L~l~~~~~~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~ 317 (543)
+.+.+..+..+. ..++|+.|++++|.+.+..+.. ..++.|+.+++.+|.+ ..+...+..+ ++|+.|+
T Consensus 230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~ 308 (520)
T 2z7x_B 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFT 308 (520)
T ss_dssp EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEE
T ss_pred cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEE
Confidence 766543221111 2458999999999988655554 3478899999999887 2221222222 6799999
Q ss_pred ccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccc--cCCCCcccCCCCCCCCCCCCCC
Q 040468 318 LSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSG--HIPPCLVNTSLSEGHDEPVAPT 395 (543)
Q Consensus 318 l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~~~~~~~~~~~~ 395 (543)
+++|.+.... ....+++|+.|++++|++++..|..+..+++|++|++++|.+.+ .+|..+..++..
T Consensus 309 l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L---------- 376 (520)
T 2z7x_B 309 VSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL---------- 376 (520)
T ss_dssp EESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC----------
T ss_pred cCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCC----------
Confidence 9999987432 23688999999999999998788899999999999999999974 333333332211
Q ss_pred CCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcc-cc--cccccCceeEEEc
Q 040468 396 SSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSY-YY--QGRILTSMFGIDL 472 (543)
Q Consensus 396 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~L~~L~l 472 (543)
. .+......+.. .- ....+++|++|++
T Consensus 377 -------~-------------------------------------------~L~Ls~N~l~~~l~~~~~~~l~~L~~L~L 406 (520)
T 2z7x_B 377 -------Q-------------------------------------------QLDISQNSVSYDEKKGDCSWTKSLLSLNM 406 (520)
T ss_dssp -------C-------------------------------------------EEECCSSCCBCCGGGCSCCCCTTCCEEEC
T ss_pred -------C-------------------------------------------EEECCCCcCCcccccchhccCccCCEEEC
Confidence 1 11111111111 00 0122689999999
Q ss_pred ccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcccCCcc-ccccCcCCcCC
Q 040468 473 SCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQ-LTVLTTLAVFR 543 (543)
Q Consensus 473 s~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~l~ 543 (543)
++|++++..|..+. ++|++|++++|.++ .+|.++..+++|+.|++++|+++ .+|.. +..+++|++|+
T Consensus 407 s~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~ 474 (520)
T 2z7x_B 407 SSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIW 474 (520)
T ss_dssp CSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred cCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEE
Confidence 99999877777665 79999999999999 88888889999999999999999 55654 88888888763
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.6e-38 Score=331.46 Aligned_cols=431 Identities=18% Similarity=0.168 Sum_probs=287.1
Q ss_pred ceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEc
Q 040468 22 QLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDV 101 (543)
Q Consensus 22 ~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l 101 (543)
..++++++++++++ +|..+. ++|++|++++|.+++ ++...+.++++|++|++++|++.+..+.+|.++++|++|++
T Consensus 32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCC-CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccc-cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 45899999999995 665543 899999999999984 45444689999999999999998888999999999999999
Q ss_pred CCCccccCCchhhhcCCCCCcEEEcCCCcCcc-CCchhhcCCCCCCEEecccccccccCchHhhhCCCCC--CEEEccCC
Q 040468 102 SNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNG-SIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSL--EILALSNN 178 (543)
Q Consensus 102 s~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L--~~L~l~~n 178 (543)
++|.++ .+|.. .+++|++|++++|.+++ ..|..+.++++|++|++++|.+.. .. +..+++| ++|++++|
T Consensus 108 s~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~---~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 108 SHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LD---LLPVAHLHLSCILLDLV 179 (562)
T ss_dssp TTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-TT---TGGGTTSCEEEEEEEES
T ss_pred CCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-Cc---hhhhhhceeeEEEeecc
Confidence 999998 77776 48999999999999986 345789999999999999998873 22 2335555 99999999
Q ss_pred cC--CCcCcccccCC--------------------------CCcCEEeCCCCccC----ccCchhhhcCCCCCEEEccCC
Q 040468 179 SL--QGHIFSKKFSL--------------------------TNLMTLQLDGNNFS----GEIPESLSKCRRLGGLYLSDN 226 (543)
Q Consensus 179 ~~--~~~~~~~l~~l--------------------------~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~~ 226 (543)
.+ .+..+..+..+ ++|+.+++.+|... ......+..++.++.+++.++
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~ 259 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI 259 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEE
T ss_pred cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCC
Confidence 88 55555544443 34444444444210 001122344455555555444
Q ss_pred cCCCc----ccccccCCCCCcEEEccCCcccccCcccc-----cCCCCCcEEEccCCcCccCCCCC----CCcccccEEE
Q 040468 227 HLSGE----IPRWLGNLSFLVDIIMPNNNLEGLIPIEF-----CQLRFLRILDLSNNTIFGTLPSC----FSPAYIEQVH 293 (543)
Q Consensus 227 ~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~~~----~~~~~L~~L~ 293 (543)
.+... .+.. ...++|++|++++|.+.+..|..+ ..++.|+.+++..+.+ ...... +...+++.|+
T Consensus 260 ~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~ 337 (562)
T 3a79_B 260 ETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLS 337 (562)
T ss_dssp EECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEE
T ss_pred cCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEE
Confidence 33311 1111 123478888888888876666655 4444455555544443 111000 0124577777
Q ss_pred cCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCccccc--ccchhhhCCCCCCEEeCCCCcc
Q 040468 294 LSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEG--EIPVQLCQLKEVQLIDLSHNNL 371 (543)
Q Consensus 294 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~--~~~~~l~~l~~L~~L~l~~n~~ 371 (543)
+++|.+.... ....+++|++|++++|.+++..|..+..+++|+.|++++|++++ .+|..+.++++|++|++++|.+
T Consensus 338 l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l 415 (562)
T 3a79_B 338 ISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL 415 (562)
T ss_dssp EESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCC
T ss_pred ccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcC
Confidence 7777664322 12456777777777777776667777777777777777777764 2345566777777777777777
Q ss_pred cccCCCC-cccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceee
Q 040468 372 SGHIPPC-LVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQF 450 (543)
Q Consensus 372 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (543)
.+.+|+. +..++ .++.+..
T Consensus 416 ~~~~~~~~~~~l~------------------------------------------------------------~L~~L~l 435 (562)
T 3a79_B 416 NSHAYDRTCAWAE------------------------------------------------------------SILVLNL 435 (562)
T ss_dssp BSCCSSCCCCCCT------------------------------------------------------------TCCEEEC
T ss_pred CCccChhhhcCcc------------------------------------------------------------cCCEEEC
Confidence 6544433 11111 0001111
Q ss_pred eccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChh-hhccCCCCeeeCCCCcCcccC
Q 040468 451 TTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTT-FSNLKQIESLDLSYNLLHGKI 529 (543)
Q Consensus 451 ~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~-~~~l~~L~~L~l~~n~i~~~~ 529 (543)
....+.........++|++|++++|+++ .+|..+..+++|++|+|++|+++ .+|.. +..+++|+.|++++|++.+..
T Consensus 436 ~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 436 SSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp CSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred CCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence 1111110001111258999999999999 78888889999999999999999 45555 899999999999999998654
Q ss_pred C
Q 040468 530 P 530 (543)
Q Consensus 530 ~ 530 (543)
+
T Consensus 514 ~ 514 (562)
T 3a79_B 514 P 514 (562)
T ss_dssp H
T ss_pred c
Confidence 3
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.7e-37 Score=326.34 Aligned_cols=420 Identities=18% Similarity=0.141 Sum_probs=254.6
Q ss_pred ceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEc
Q 040468 22 QLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDV 101 (543)
Q Consensus 22 ~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l 101 (543)
++++|+|++|++++..+..+.++++|++|+|++|+++ .+++..|.++++|++|+|++|++.+..+.+|.++++|++|++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 7999999999998666677899999999999999997 555555688999999999999998777788999999999999
Q ss_pred CCCccccCCchhhhcCCCCCcEEEcCCCcCcc-CCchhhcCCCCCCEEecccccccccCchHhhhCCCC----CCEEEcc
Q 040468 102 SNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNG-SIPSSFADMQMLARLDISYNQLTGEIPERMATGCFS----LEILALS 176 (543)
Q Consensus 102 s~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~----L~~L~l~ 176 (543)
++|.++ .++...+..+++|++|++++|.+.. ..|..+..+++|++|++++|.+.+..+.. +..+.+ ...++++
T Consensus 132 s~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-l~~L~~l~~~~~~~~ls 209 (635)
T 4g8a_A 132 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLSLDLS 209 (635)
T ss_dssp TTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG-GHHHHTCTTCCCEEECT
T ss_pred CCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc-ccchhhhhhhhhhhhcc
Confidence 999998 6666655558999999999999875 35778888999999999999887433332 222222 2345555
Q ss_pred CCcCCCcCcccc------------------------cCCCCcCE------------------------------------
Q 040468 177 NNSLQGHIFSKK------------------------FSLTNLMT------------------------------------ 196 (543)
Q Consensus 177 ~n~~~~~~~~~l------------------------~~l~~L~~------------------------------------ 196 (543)
.|.+....+..+ ..++.++.
T Consensus 210 ~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~ 289 (635)
T 4g8a_A 210 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 289 (635)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred cCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence 554432211111 11111111
Q ss_pred ---------------------EeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccc-------------------cc
Q 040468 197 ---------------------LQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPR-------------------WL 236 (543)
Q Consensus 197 ---------------------L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-------------------~l 236 (543)
+.+.++.+... ..+.....++.+++.++.+...... ..
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 367 (635)
T 4g8a_A 290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 367 (635)
T ss_dssp CCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCC
T ss_pred hhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccc
Confidence 11111111100 0112223344444444333211110 11
Q ss_pred cCCCCCcEEEccCCcccc--cCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccc-cCCCCCCCCCc
Q 040468 237 GNLSFLVDIIMPNNNLEG--LIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGR-LESVIPDSPNL 313 (543)
Q Consensus 237 ~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L 313 (543)
..+++|+.+++++|.+.. ..+..+..+.+|+.+++..+........+..+++|+.+++..+..... ....+..++++
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred ccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence 123344444444443321 112222333444444444444433333333455566666655544333 22344555666
Q ss_pred cEEEccccccccccCccCCCCCCCCEEEccCcccc-cccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCC
Q 040468 314 VTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIE-GEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPV 392 (543)
Q Consensus 314 ~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~ 392 (543)
+.++++.|.+....+..+..++.++.|++++|++. ...|..|..+++|++|++++|.+.+..|..+..
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~----------- 516 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS----------- 516 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT-----------
T ss_pred ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcC-----------
Confidence 66666666666555555666666666666666533 234555666666666666666665444433332
Q ss_pred CCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEc
Q 040468 393 APTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDL 472 (543)
Q Consensus 393 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 472 (543)
+++|++|+|
T Consensus 517 -----------------------------------------------------------------------l~~L~~L~L 525 (635)
T 4g8a_A 517 -----------------------------------------------------------------------LSSLQVLNM 525 (635)
T ss_dssp -----------------------------------------------------------------------CTTCCEEEC
T ss_pred -----------------------------------------------------------------------CCCCCEEEC
Confidence 457777777
Q ss_pred ccCccccccChhhhcccccCeeeCcCCccccccChhhhcc-CCCCeeeCCCCcCccc
Q 040468 473 SCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNL-KQIESLDLSYNLLHGK 528 (543)
Q Consensus 473 s~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l-~~L~~L~l~~n~i~~~ 528 (543)
++|++++..|..|..+++|++|+|++|++++..|..+..+ ++|+.|++++|++.+.
T Consensus 526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp TTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 7777775556667777777777777777777777777776 4677777777777653
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.4e-37 Score=313.47 Aligned_cols=372 Identities=19% Similarity=0.173 Sum_probs=278.7
Q ss_pred CceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEE
Q 040468 21 FQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLD 100 (543)
Q Consensus 21 ~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ 100 (543)
.+|++|+|+++.+++..|..+.++++|++|++++|.+.+.++...+.++++|++|++++|++.+..|.++.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 37999999999999877888999999999999999987777766678999999999999999888899999999999999
Q ss_pred cCCCccccCCchh-hhcCCCCCcEEEcCCCcCccCCchh-hcCCCCCCEEecccccccccCchHhhh-CCCCCCEEEccC
Q 040468 101 VSNNFFQGHIPVE-IGTYLPGLMEFNLSRNAFNGSIPSS-FADMQMLARLDISYNQLTGEIPERMAT-GCFSLEILALSN 177 (543)
Q Consensus 101 ls~~~i~~~~~~~-~~~~l~~L~~L~L~~~~i~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~-~~~~L~~L~l~~ 177 (543)
+++|.+.+..+.. .+..+++|++|++++|.+++..|.. +.++++|++|++++|.+.+..+..+.. ...+++.+++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999988544443 2444899999999999999776765 889999999999999998555544332 126799999999
Q ss_pred CcCCCcCccc--------ccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccC
Q 040468 178 NSLQGHIFSK--------KFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPN 249 (543)
Q Consensus 178 n~~~~~~~~~--------l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 249 (543)
|.+....... +..+++|+.|++++|.+.+..+..+... ...++++.+++++
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~---------------------~~~~~L~~L~l~~ 248 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA---------------------IAGTKIQSLILSN 248 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH---------------------TTTCCEEEEECTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc---------------------ccccceeeEeecc
Confidence 9887544332 2234556666666666554444333322 0113444444444
Q ss_pred CcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCc
Q 040468 250 NNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPN 329 (543)
Q Consensus 250 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~ 329 (543)
|...+... ....++.+.. . .......++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+.
T Consensus 249 ~~~~~~~~-~~~~~~~~~~-----~-----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 317 (455)
T 3v47_A 249 SYNMGSSF-GHTNFKDPDN-----F-----TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN 317 (455)
T ss_dssp CTTTSCCT-TCCSSCCCCT-----T-----TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT
T ss_pred cccccccc-chhhhccCcc-----c-----ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh
Confidence 43322100 0000010000 0 00001146788888888888877777888889999999999999877788
Q ss_pred cCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 040468 330 RIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSY 409 (543)
Q Consensus 330 ~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 409 (543)
.+..+++|+.|++++|++++..+..+..+++|++|++++|.+.+..|..+..
T Consensus 318 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---------------------------- 369 (455)
T 3v47_A 318 AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG---------------------------- 369 (455)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT----------------------------
T ss_pred HhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccc----------------------------
Confidence 8899999999999999998777888889999999999999887655544433
Q ss_pred cccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhccc
Q 040468 410 TKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLT 489 (543)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~ 489 (543)
+++|++|++++|++++..+..+..++
T Consensus 370 ------------------------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~ 395 (455)
T 3v47_A 370 ------------------------------------------------------LPNLKELALDTNQLKSVPDGIFDRLT 395 (455)
T ss_dssp ------------------------------------------------------CTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred ------------------------------------------------------cccccEEECCCCccccCCHhHhccCC
Confidence 56899999999999954455678999
Q ss_pred ccCeeeCcCCccccccC
Q 040468 490 KIHALNLSHNNLTGTIP 506 (543)
Q Consensus 490 ~L~~L~ls~n~i~~~~~ 506 (543)
+|++|+|++|++++..|
T Consensus 396 ~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 396 SLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCCEEECCSSCBCCCTT
T ss_pred cccEEEccCCCcccCCC
Confidence 99999999999998776
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=8.9e-36 Score=317.69 Aligned_cols=452 Identities=19% Similarity=0.128 Sum_probs=302.3
Q ss_pred EEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCC
Q 040468 25 SISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNN 104 (543)
Q Consensus 25 ~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~ 104 (543)
..+-++-+++ .+|..+- +++++|+|++|.++ .++...|.++++|++|+|++|++.+..+.+|.++++|++|+|++|
T Consensus 35 ~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 35 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence 3344444555 4554331 48999999999998 566555699999999999999998888889999999999999999
Q ss_pred ccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcC
Q 040468 105 FFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHI 184 (543)
Q Consensus 105 ~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 184 (543)
.++ .+|...+..+++|++|++++|.+++..+..|+++++|++|++++|.+........+..+++|++|++++|.+.+..
T Consensus 111 ~l~-~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 111 PIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp CCC-EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred cCC-CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence 998 7887777779999999999999997666679999999999999999874333344556999999999999998776
Q ss_pred cccccCCCC----cCEEeCCCCccCccCchh------------------------hhcCCCCCEEEccCCcC------CC
Q 040468 185 FSKKFSLTN----LMTLQLDGNNFSGEIPES------------------------LSKCRRLGGLYLSDNHL------SG 230 (543)
Q Consensus 185 ~~~l~~l~~----L~~L~l~~~~~~~~~~~~------------------------l~~~~~L~~L~l~~~~~------~~ 230 (543)
+..+..+.+ ...++++.+.+....+.. +..+..++...+..+.. ..
T Consensus 190 ~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~ 269 (635)
T 4g8a_A 190 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 269 (635)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred cccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccc
Confidence 666554333 335666666554322211 11222222221110000 00
Q ss_pred ---------------------------cccc----------------------cccCCCCCcEEEccCCcccccCccccc
Q 040468 231 ---------------------------EIPR----------------------WLGNLSFLVDIIMPNNNLEGLIPIEFC 261 (543)
Q Consensus 231 ---------------------------~~~~----------------------~l~~~~~L~~L~l~~~~~~~~~~~~l~ 261 (543)
.... .+.....++.+++.+|.+....+ .
T Consensus 270 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~ 346 (635)
T 4g8a_A 270 FDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT---L 346 (635)
T ss_dssp CCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCC---C
T ss_pred ccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCc---c
Confidence 0001 11222334444444443332211 1
Q ss_pred CCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccc--cCCCCCCCCCccEEEccccccccccCccCCCCCCCCE
Q 040468 262 QLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGR--LESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSY 339 (543)
Q Consensus 262 ~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~ 339 (543)
.+..|+.+++..+.... ......+++|+.+++++|.+... .+..+....+|+++++..+.+. ..+..+..+++|+.
T Consensus 347 ~l~~L~~l~l~~n~~~~-~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~ 424 (635)
T 4g8a_A 347 KLKSLKRLTFTSNKGGN-AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEH 424 (635)
T ss_dssp BCTTCCEEEEESCCSCC-BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCE
T ss_pred cchhhhhcccccccCCC-Ccccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccc
Confidence 23344455554444332 22223467888888888877533 2223445677888888888776 45556777888888
Q ss_pred EEccCccccccc-chhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCcc
Q 040468 340 LLLANNYIEGEI-PVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATT 418 (543)
Q Consensus 340 L~l~~n~i~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~ 418 (543)
+++.+++..... ...+..+++++.++++.|.+....+..+...+... ......+....
T Consensus 425 l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~-----------------~L~Ls~N~~~~---- 483 (635)
T 4g8a_A 425 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE-----------------VLKMAGNSFQE---- 483 (635)
T ss_dssp EECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC-----------------EEECTTCEEGG----
T ss_pred hhhhhccccccccccccccccccccccccccccccccccccccchhhh-----------------hhhhhhccccc----
Confidence 888877665433 34566778888888888887655444433322111 00000000000
Q ss_pred CCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcC
Q 040468 419 PFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSH 498 (543)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~ 498 (543)
... -.....+++|++|+|++|++++..|..|..+++|++|+|++
T Consensus 484 --------------~~~----------------------~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~ 527 (635)
T 4g8a_A 484 --------------NFL----------------------PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527 (635)
T ss_dssp --------------GEE----------------------CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred --------------ccC----------------------chhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence 000 00011268999999999999977788999999999999999
Q ss_pred CccccccChhhhccCCCCeeeCCCCcCcccCCcccccc-CcCCcCC
Q 040468 499 NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVL-TTLAVFR 543 (543)
Q Consensus 499 n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l-~~L~~l~ 543 (543)
|+|++..|..|..+++|+.|++++|+|++..|+.+..+ ++|+.|+
T Consensus 528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~ 573 (635)
T 4g8a_A 528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 573 (635)
T ss_dssp SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEE
T ss_pred CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEE
Confidence 99998889999999999999999999999999999887 6788763
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.4e-36 Score=318.37 Aligned_cols=424 Identities=20% Similarity=0.189 Sum_probs=285.5
Q ss_pred cCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCC
Q 040468 42 YHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGL 121 (543)
Q Consensus 42 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L 121 (543)
..+...++++++++.++ .+|..+ .++|++|++++|.+.+..+.++..+++|++|++++|.+++..|..+. .+++|
T Consensus 28 ~~~~~~~~l~ls~~~L~-~ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L 102 (562)
T 3a79_B 28 FSNELESMVDYSNRNLT-HVPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFL-FNQDL 102 (562)
T ss_dssp -----CCEEECTTSCCC-SCCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTT-TCTTC
T ss_pred cccCCCcEEEcCCCCCc-cCCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhC-CCCCC
Confidence 34556699999999998 688765 38999999999999888888999999999999999999843344444 49999
Q ss_pred cEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCc-hHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCC
Q 040468 122 MEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIP-ERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLD 200 (543)
Q Consensus 122 ~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 200 (543)
++|++++|.++ .+|.. .+++|++|++++|.+. .++ ...+..+++|++|++++|.+.......+..+ +|+.|+++
T Consensus 103 ~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~-~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~ 177 (562)
T 3a79_B 103 EYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLD 177 (562)
T ss_dssp CEEECTTSCCC-EECSC--CCTTCSEEECCSSCCS-BCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEE
T ss_pred CEEECCCCcCC-ccCcc--ccccCCEEECCCCCcc-ccCchHhhcccCcccEEecCCCccccCchhhhhhc-eeeEEEee
Confidence 99999999998 45555 7999999999999998 443 2445569999999999999876433333333 44999999
Q ss_pred CCcc--CccCchhhhcCC-CCCEEEccCCcCCCccc-----------------------------ccccCCCCCcEEEcc
Q 040468 201 GNNF--SGEIPESLSKCR-RLGGLYLSDNHLSGEIP-----------------------------RWLGNLSFLVDIIMP 248 (543)
Q Consensus 201 ~~~~--~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~-----------------------------~~l~~~~~L~~L~l~ 248 (543)
+|.+ .+..+..+..+. ..-.+++++|.+....+ ..+..++.++.+++.
T Consensus 178 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~ 257 (562)
T 3a79_B 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257 (562)
T ss_dssp ESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred cccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEec
Confidence 9988 656665555433 11133444444332222 123334444444444
Q ss_pred CCccccc----CcccccCCCCCcEEEccCCcCccCCCCCC------CcccccEEEcCCCccccccCCCCC---CCCCccE
Q 040468 249 NNNLEGL----IPIEFCQLRFLRILDLSNNTIFGTLPSCF------SPAYIEQVHLSKNKIEGRLESVIP---DSPNLVT 315 (543)
Q Consensus 249 ~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~ 315 (543)
++.+.+. .+..+ ..++|+.|++++|.+.+..+... .++.|+.+++..+.+ ..+...+. ..++|++
T Consensus 258 ~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~ 335 (562)
T 3a79_B 258 HIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKM 335 (562)
T ss_dssp EEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSE
T ss_pred CCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceE
Confidence 4333221 01111 22467777777777664444322 123333333333332 01000000 1257999
Q ss_pred EEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccccc--CCCCcccCCCCCCCCCCCC
Q 040468 316 LDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGH--IPPCLVNTSLSEGHDEPVA 393 (543)
Q Consensus 316 L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~~~~~~~~~~~~~~~~~~ 393 (543)
|++++|.+.... ....+++|+.|++++|++++..|..+.++++|++|++++|.+.+. +|..+..++.
T Consensus 336 L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~--------- 404 (562)
T 3a79_B 336 LSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSS--------- 404 (562)
T ss_dssp EEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTT---------
T ss_pred EEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCC---------
Confidence 999999886322 236889999999999999988889999999999999999998741 1223333221
Q ss_pred CCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcc---cccccccCceeEE
Q 040468 394 PTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSY---YYQGRILTSMFGI 470 (543)
Q Consensus 394 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~L 470 (543)
+....... ..+.. ......+++|++|
T Consensus 405 --------L~~L~l~~-------------------------------------------N~l~~~~~~~~~~~l~~L~~L 433 (562)
T 3a79_B 405 --------LETLDVSL-------------------------------------------NSLNSHAYDRTCAWAESILVL 433 (562)
T ss_dssp --------CCEEECTT-------------------------------------------SCCBSCCSSCCCCCCTTCCEE
T ss_pred --------CCEEECCC-------------------------------------------CcCCCccChhhhcCcccCCEE
Confidence 11111111 11110 0001226899999
Q ss_pred EcccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcccCCcc-ccccCcCCcCC
Q 040468 471 DLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQ-LTVLTTLAVFR 543 (543)
Q Consensus 471 ~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~l~ 543 (543)
++++|++++..|..+. ++|++|++++|+++ .+|.++..+++|+.|++++|+++ .+|.. +..+++|+.|+
T Consensus 434 ~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~ 503 (562)
T 3a79_B 434 NLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIW 503 (562)
T ss_dssp ECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEE
T ss_pred ECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEE
Confidence 9999999876666554 79999999999999 78888889999999999999999 56665 88899888763
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=7.1e-36 Score=302.69 Aligned_cols=378 Identities=23% Similarity=0.275 Sum_probs=243.0
Q ss_pred CceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCC-------------CcEEEccCCcccccCC
Q 040468 21 FQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTN-------------LETLLLANNSLFGSFR 87 (543)
Q Consensus 21 ~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~-------------L~~L~L~~~~~~~~~~ 87 (543)
..|++|+++++.+ +.+|..++++++|++|++++|.+.+.+|..+ .++.+ +++|+++++++++. |
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l-p 87 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSL-P 87 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-C
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccC-C
Confidence 4799999999999 6899999999999999999999988888764 55554 58999999987553 3
Q ss_pred CCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCC
Q 040468 88 MPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGC 167 (543)
Q Consensus 88 ~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 167 (543)
. ..++|++|++++|.++ .+|.. +++|++|++++|.+++ ++.. .++|++|++++|.+. .+| . +..+
T Consensus 88 ~---~~~~L~~L~l~~n~l~-~lp~~----~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~-~lp-~-~~~l 152 (454)
T 1jl5_A 88 E---LPPHLESLVASCNSLT-ELPEL----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE-KLP-E-LQNS 152 (454)
T ss_dssp S---CCTTCSEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS-SCC-C-CTTC
T ss_pred C---CcCCCCEEEccCCcCC-ccccc----cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC-CCc-c-cCCC
Confidence 2 2378999999999888 46642 4789999999998874 2221 168999999999888 577 3 5568
Q ss_pred CCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEc
Q 040468 168 FSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIM 247 (543)
Q Consensus 168 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 247 (543)
++|++|++++|.+.+. +.. .++|++|++++|.+.+ .| .+..+++|+.|++++|.+.. .|.. .++|+.|++
T Consensus 153 ~~L~~L~l~~N~l~~l-p~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l 222 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKKL-PDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVA 222 (454)
T ss_dssp TTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEEC
T ss_pred CCCCEEECCCCcCccc-CCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEEC
Confidence 8999999999988752 222 3589999999998875 45 57888999999999988874 3332 358899999
Q ss_pred cCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEcccccccccc
Q 040468 248 PNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSI 327 (543)
Q Consensus 248 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 327 (543)
++|.+.. +| .+..+++|+.|++++|.+.+.. .. +++|+.|++++|.+++... ..++|++|++++|.+++ +
T Consensus 223 ~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~l~-~~--~~~L~~L~l~~N~l~~l~~----~~~~L~~L~ls~N~l~~-l 292 (454)
T 1jl5_A 223 GNNILEE-LP-ELQNLPFLTTIYADNNLLKTLP-DL--PPSLEALNVRDNYLTDLPE----LPQSLTFLDVSENIFSG-L 292 (454)
T ss_dssp CSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCC-SC--CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSE-E
T ss_pred cCCcCCc-cc-ccCCCCCCCEEECCCCcCCccc-cc--ccccCEEECCCCcccccCc----ccCcCCEEECcCCccCc-c
Confidence 9998874 45 4788889999999998887533 22 4788999999998876332 23789999999998884 2
Q ss_pred CccCCCCCCCCEEEccCcccccccchhhhCC-CCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCcc
Q 040468 328 PNRIDRLPQLSYLLLANNYIEGEIPVQLCQL-KEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYA 406 (543)
Q Consensus 328 ~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~ 406 (543)
+.. .++|+.|++++|++++ ++ .+ ++|++|++++|.+.+ +|+.
T Consensus 293 ~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---------------------------- 335 (454)
T 1jl5_A 293 SEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---------------------------- 335 (454)
T ss_dssp SCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC----------------------------
T ss_pred cCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc----------------------------
Confidence 221 2678899999998874 22 23 588899999988763 3322
Q ss_pred ccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhh
Q 040468 407 SSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIG 486 (543)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~ 486 (543)
+++|++|++++|+++ .+|.
T Consensus 336 ---------------------------------------------------------~~~L~~L~L~~N~l~-~lp~--- 354 (454)
T 1jl5_A 336 ---------------------------------------------------------PPRLERLIASFNHLA-EVPE--- 354 (454)
T ss_dssp ---------------------------------------------------------CTTCCEEECCSSCCS-CCCC---
T ss_pred ---------------------------------------------------------CCcCCEEECCCCccc-cccc---
Confidence 246667777777766 4555
Q ss_pred cccccCeeeCcCCcccc--ccChhhhcc-------------CCCCeeeCCCCcCcc--cCCcccc
Q 040468 487 YLTKIHALNLSHNNLTG--TIPTTFSNL-------------KQIESLDLSYNLLHG--KIPSQLT 534 (543)
Q Consensus 487 ~l~~L~~L~ls~n~i~~--~~~~~~~~l-------------~~L~~L~l~~n~i~~--~~~~~~~ 534 (543)
.+++|++|++++|.+++ .+|.++..+ ++|+.|++++|++++ .+|.++.
T Consensus 355 ~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~ 419 (454)
T 1jl5_A 355 LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVE 419 (454)
T ss_dssp CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------------------
T ss_pred hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHh
Confidence 35667777777777766 566666666 667777777777765 5555444
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.1e-34 Score=296.73 Aligned_cols=301 Identities=26% Similarity=0.345 Sum_probs=222.8
Q ss_pred CCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCc
Q 040468 43 HQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLM 122 (543)
Q Consensus 43 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~ 122 (543)
.++++++|+++++.+. .++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+. .++. +. .+++|+
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~-~l~~L~ 115 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP-LA-NLTNLT 115 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG-GT-TCTTCC
T ss_pred HhccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh-hc-CCCCCC
Confidence 4678899999988886 5665 5778999999999998866554 888899999999999887 4444 44 488999
Q ss_pred EEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCC
Q 040468 123 EFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGN 202 (543)
Q Consensus 123 ~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~ 202 (543)
+|++++|.+++. + .+.++++|++|++++|.+. .++. +..+++|++|++++ .+... ..+..+++|+.|++++|
T Consensus 116 ~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 116 GLTLFNNQITDI-D-PLKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSN 187 (466)
T ss_dssp EEECCSSCCCCC-G-GGTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSS
T ss_pred EEECCCCCCCCC-h-HHcCCCCCCEEECCCCccC-CChh--hccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCC
Confidence 999999988754 3 3888899999999999887 4443 45688899998864 33322 33778888888888888
Q ss_pred ccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCC
Q 040468 203 NFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPS 282 (543)
Q Consensus 203 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 282 (543)
.+... ..+..+++|++|++++|.+....+ ++.+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+
T Consensus 188 ~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~- 260 (466)
T 1o6v_A 188 KVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP- 260 (466)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred cCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh-
Confidence 87643 346778888888888888775444 66788888888888887754 356677888888888887765433
Q ss_pred CCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCC
Q 040468 283 CFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQ 362 (543)
Q Consensus 283 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~ 362 (543)
+..+++|+.|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|++++..+ +..+++|+
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 334 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 334 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCC
T ss_pred hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCC
Confidence 4446777777777777765543 6667777777777777774333 6677777777777777775444 56777777
Q ss_pred EEeCCCCccc
Q 040468 363 LIDLSHNNLS 372 (543)
Q Consensus 363 ~L~l~~n~~~ 372 (543)
+|++++|++.
T Consensus 335 ~L~l~~n~l~ 344 (466)
T 1o6v_A 335 RLFFYNNKVS 344 (466)
T ss_dssp EEECCSSCCC
T ss_pred EeECCCCccC
Confidence 7777777765
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.2e-34 Score=292.34 Aligned_cols=320 Identities=26% Similarity=0.335 Sum_probs=169.1
Q ss_pred ceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEc
Q 040468 22 QLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDV 101 (543)
Q Consensus 22 ~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l 101 (543)
++++|+++++.+.. ++ .+..+++|++|++++|.++ .++. +.++++|++|++++|.+.+..+ +..+++|++|++
T Consensus 47 ~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 119 (466)
T 1o6v_A 47 QVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119 (466)
T ss_dssp TCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred cccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence 45666666555553 23 2455566666666666554 2232 3555666666666665544333 555666666666
Q ss_pred CCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCC
Q 040468 102 SNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQ 181 (543)
Q Consensus 102 s~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 181 (543)
++|.+. .++. + ..+++|++|++++|.+.+ + ..+.++++|++|++++ .+. ..+. +..+++|++|++++|.+.
T Consensus 120 ~~n~l~-~~~~-~-~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~-~~~-~~~~--~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 120 FNNQIT-DIDP-L-KNLTNLNRLELSSNTISD-I-SALSGLTSLQQLSFGN-QVT-DLKP--LANLTTLERLDISSNKVS 190 (466)
T ss_dssp CSSCCC-CCGG-G-TTCTTCSEEEEEEEEECC-C-GGGTTCTTCSEEEEEE-SCC-CCGG--GTTCTTCCEEECCSSCCC
T ss_pred CCCCCC-CChH-H-cCCCCCCEEECCCCccCC-C-hhhccCCcccEeecCC-ccc-Cchh--hccCCCCCEEECcCCcCC
Confidence 666555 3332 2 225566666666665552 2 2355556666666542 222 1221 334556666666666554
Q ss_pred CcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCccccc
Q 040468 182 GHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFC 261 (543)
Q Consensus 182 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~ 261 (543)
.. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +.
T Consensus 191 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~ 262 (466)
T 1o6v_A 191 DI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS 262 (466)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred CC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hh
Confidence 32 234555566666666665553322 44555666666666655432 235555666666666665554422 45
Q ss_pred CCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEE
Q 040468 262 QLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLL 341 (543)
Q Consensus 262 ~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~ 341 (543)
.+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|+
T Consensus 263 ~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 337 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 337 (466)
T ss_dssp TCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEE
T ss_pred cCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeE
Confidence 55566666666665554322 3335556666666665554332 4455566666666666554333 45556666666
Q ss_pred ccCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468 342 LANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372 (543)
Q Consensus 342 l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 372 (543)
+++|++++. ..+..+++|++|++++|++.
T Consensus 338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 338 FYNNKVSDV--SSLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred CCCCccCCc--hhhccCCCCCEEeCCCCccC
Confidence 666655532 23555566666666666554
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=290.48 Aligned_cols=295 Identities=20% Similarity=0.241 Sum_probs=205.3
Q ss_pred cEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEeccc
Q 040468 73 ETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISY 152 (543)
Q Consensus 73 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~ 152 (543)
+.++.++.+++ .+|..+ .+++++|++++|.++ .++...+..+++|++|++++|.+++..|..|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 56777777663 344443 357888888888887 44433344488888888888888877778888888888888888
Q ss_pred ccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcc
Q 040468 153 NQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEI 232 (543)
Q Consensus 153 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 232 (543)
|.+. .++...+..+++|++|++++|.+....+..+..+++|+.|++.+|.+....+..+..+++|+.|++++|.+....
T Consensus 90 n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 90 NRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp SCCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CcCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 8887 677666667888888888888887776777778888888888888877666677777888888888888777666
Q ss_pred cccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCC-CCCCcccccEEEcCCCccccccCCCCCCCC
Q 040468 233 PRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLP-SCFSPAYIEQVHLSKNKIEGRLESVIPDSP 311 (543)
Q Consensus 233 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 311 (543)
+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+..+ ..+...+|+.|++++|.+++.....+..++
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 248 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence 6667778888888888887777666677777777777777765443322 233344566666666666544434455566
Q ss_pred CccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468 312 NLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372 (543)
Q Consensus 312 ~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 372 (543)
+|++|++++|.+++..+..+..+++|+.|++++|++++..+..|..+++|++|++++|.+.
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309 (477)
T ss_dssp TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc
Confidence 6666666666666554555566666666666666666555555666666666666666554
No 31
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=9.9e-34 Score=286.97 Aligned_cols=359 Identities=23% Similarity=0.292 Sum_probs=252.6
Q ss_pred CCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCC-------------CEEEcCCCccccC
Q 040468 43 HQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKL-------------ATLDVSNNFFQGH 109 (543)
Q Consensus 43 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L-------------~~L~ls~~~i~~~ 109 (543)
+..+|++|+++++.+ +.+|..+ .++++|++|++++|.+.+..|.+++.+.+| ++|++++|.++ .
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i-~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~ 85 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-S 85 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-C
T ss_pred ccccchhhhcccCch-hhCChhH-hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-c
Confidence 468999999999999 6899885 899999999999999988999999988765 88999988887 5
Q ss_pred CchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCccccc
Q 040468 110 IPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKF 189 (543)
Q Consensus 110 ~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~ 189 (543)
+|. ..++|++|++++|.+++ +|.. +++|++|++++|.+. .++. ..++|++|++++|.+.+ .+ .+.
T Consensus 86 lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~----~~~~L~~L~L~~n~l~~-lp-~~~ 150 (454)
T 1jl5_A 86 LPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSD----LPPLLEYLGVSNNQLEK-LP-ELQ 150 (454)
T ss_dssp CCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCS----CCTTCCEEECCSSCCSS-CC-CCT
T ss_pred CCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccC----CCCCCCEEECcCCCCCC-Cc-ccC
Confidence 554 24688999999888885 5543 378888999888877 4442 13688888888888876 33 578
Q ss_pred CCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEE
Q 040468 190 SLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRIL 269 (543)
Q Consensus 190 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 269 (543)
.+++|++|++++|.+.+ +|.. ..+|++|++++|.+.. .| .++.+++|+.|++++|.+.+. |.. .++|+.|
T Consensus 151 ~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~~---~~~L~~L 220 (454)
T 1jl5_A 151 NSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PDL---PLSLESI 220 (454)
T ss_dssp TCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CCC---CTTCCEE
T ss_pred CCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CCC---cCcccEE
Confidence 88888888888888774 4432 3588888888888874 44 478888888888888887753 322 2578888
Q ss_pred EccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCccccc
Q 040468 270 DLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEG 349 (543)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~ 349 (543)
++++|.+. ..+.+..+++|+.|++++|++++... ..++|++|++++|++++ +|.. +++|+.|++++|++++
T Consensus 221 ~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 221 VAGNNILE-ELPELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG 291 (454)
T ss_dssp ECCSSCCS-SCCCCTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE
T ss_pred ECcCCcCC-cccccCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc
Confidence 88888877 34455557888888888888875332 23688888888888874 4443 3678888888888874
Q ss_pred ccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCc
Q 040468 350 EIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYP 429 (543)
Q Consensus 350 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (543)
++. -.++|++|++++|.+.+ ++
T Consensus 292 -l~~---~~~~L~~L~l~~N~l~~-i~----------------------------------------------------- 313 (454)
T 1jl5_A 292 -LSE---LPPNLYYLNASSNEIRS-LC----------------------------------------------------- 313 (454)
T ss_dssp -ESC---CCTTCCEEECCSSCCSE-EC-----------------------------------------------------
T ss_pred -ccC---cCCcCCEEECcCCcCCc-cc-----------------------------------------------------
Confidence 221 12678888888887752 11
Q ss_pred ccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhh
Q 040468 430 YALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTF 509 (543)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~ 509 (543)
..+++|++|++++|+++ .+|.. +++|++|++++|.++ .+|.
T Consensus 314 --------------------------------~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~l~-~lp~-- 354 (454)
T 1jl5_A 314 --------------------------------DLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPE-- 354 (454)
T ss_dssp --------------------------------CCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCC--
T ss_pred --------------------------------CCcCcCCEEECCCCccc-ccccc---CCcCCEEECCCCccc-cccc--
Confidence 00358999999999999 57764 589999999999999 5665
Q ss_pred hccCCCCeeeCCCCcCcc--cCCcccccc
Q 040468 510 SNLKQIESLDLSYNLLHG--KIPSQLTVL 536 (543)
Q Consensus 510 ~~l~~L~~L~l~~n~i~~--~~~~~~~~l 536 (543)
.+++|+.|++++|++++ .+|.++..+
T Consensus 355 -~l~~L~~L~L~~N~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 355 -LPQNLKQLHVEYNPLREFPDIPESVEDL 382 (454)
T ss_dssp -CCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred -hhhhccEEECCCCCCCcCCCChHHHHhh
Confidence 47899999999999998 788888877
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=9.4e-34 Score=287.37 Aligned_cols=210 Identities=19% Similarity=0.191 Sum_probs=97.0
Q ss_pred hccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCC
Q 040468 40 FLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLP 119 (543)
Q Consensus 40 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~ 119 (543)
.+.++++|++|+++++.+++ +|. +..+++|++|++++|++.+. + +..+++|++|++++|.++ .++ +.. ++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~-~~~--l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~-~~~--~~~-l~ 106 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITD-MTG--IEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLT-NLD--VTP-LT 106 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCC-CTT--GGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS-CCC--CTT-CT
T ss_pred ChhHcCCCCEEEccCCCccc-Chh--hcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCc-eee--cCC-CC
Confidence 34455555555555555542 332 34555555555555555332 2 445555555555555554 222 222 45
Q ss_pred CCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeC
Q 040468 120 GLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQL 199 (543)
Q Consensus 120 ~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 199 (543)
+|++|++++|.+++ ++ +..+++|++|++++|.+.+ ++ +..+++|++|++++|...+.. .+..+++|+.|++
T Consensus 107 ~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 177 (457)
T 3bz5_A 107 KLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDC 177 (457)
T ss_dssp TCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred cCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEEC
Confidence 55555555555543 22 4445555555555555542 22 223445555555555322111 2344455555555
Q ss_pred CCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCc
Q 040468 200 DGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIF 277 (543)
Q Consensus 200 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 277 (543)
++|.+++ .+ +..+++|+.|++++|.+... .+..+++|+.|++++|.+.+. | +..+++|+.|++++|.+.
T Consensus 178 s~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 178 SFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp CSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS
T ss_pred CCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCC
Confidence 5554442 22 34444455555554444422 144444444444444444432 2 334444444444444444
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.5e-33 Score=285.96 Aligned_cols=319 Identities=20% Similarity=0.156 Sum_probs=204.4
Q ss_pred eEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCC
Q 040468 24 TSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSN 103 (543)
Q Consensus 24 ~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~ 103 (543)
+.++.++.+++ .+|..+ .+++++|++++|.+++..+.. +.++++|++|++++|.+.+..+.+|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDE-FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhH-ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 45666666665 345433 257788888888777444433 47778888888888877777777788888888888888
Q ss_pred CccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCc
Q 040468 104 NFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGH 183 (543)
Q Consensus 104 ~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 183 (543)
|.++ .++...+..+++|++|++++|.+.+..+..+.++++|++|++++|.+. .++...+..+++|++|++++|.+...
T Consensus 90 n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 90 NRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp SCCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC-EECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred CcCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc-eeChhhccCCCCCCEEECCCCcCccc
Confidence 8777 666665555778888888888777666677777778888888777776 44434445577777777777777665
Q ss_pred CcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCC
Q 040468 184 IFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQL 263 (543)
Q Consensus 184 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l 263 (543)
....+..+++|+.|++.+|.+....+..+..+++|+.|++++|......+.......+|+.|++++|.+....+..+..+
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 247 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL 247 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC
T ss_pred ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCc
Confidence 55566667777777777777665555566666777777777666554455444444566666666666665544455666
Q ss_pred CCCcEEEccCCcCccCCCCCCC-cccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEc
Q 040468 264 RFLRILDLSNNTIFGTLPSCFS-PAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLL 342 (543)
Q Consensus 264 ~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l 342 (543)
++|+.|++++|.+.+..+..+. +++|+.|++++|.+++..+..+..+++|++|++++|.++...+..+..+++|+.|++
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327 (477)
T ss_dssp TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence 6666666666665544433332 455555555555555554555555555555555555555444444555555555555
Q ss_pred cCcccc
Q 040468 343 ANNYIE 348 (543)
Q Consensus 343 ~~n~i~ 348 (543)
++|++.
T Consensus 328 ~~N~l~ 333 (477)
T 2id5_A 328 DSNPLA 333 (477)
T ss_dssp CSSCEE
T ss_pred cCCCcc
Confidence 555554
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.7e-32 Score=278.17 Aligned_cols=306 Identities=20% Similarity=0.173 Sum_probs=242.9
Q ss_pred CCCceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCE
Q 040468 19 PKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLAT 98 (543)
Q Consensus 19 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~ 98 (543)
...+|++|+++++.+++. | .+..+++|++|++++|.+++ ++ +..+++|++|++++|++.+. + +..+++|++
T Consensus 40 ~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~ 110 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTY 110 (457)
T ss_dssp HHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCE
T ss_pred HcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCcee-e--cCCCCcCCE
Confidence 345899999999999965 5 68999999999999999985 44 57899999999999998764 3 889999999
Q ss_pred EEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCC
Q 040468 99 LDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNN 178 (543)
Q Consensus 99 L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n 178 (543)
|++++|.++ .++ +.. +++|++|++++|.+++. .+..+++|++|++++|...+.++ +..+++|++|++++|
T Consensus 111 L~L~~N~l~-~l~--~~~-l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 111 LNCDTNKLT-KLD--VSQ-NPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFN 180 (457)
T ss_dssp EECCSSCCS-CCC--CTT-CTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSS
T ss_pred EECCCCcCC-eec--CCC-CCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCC
Confidence 999999998 455 444 89999999999999863 37889999999999996554553 445899999999999
Q ss_pred cCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcc
Q 040468 179 SLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPI 258 (543)
Q Consensus 179 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 258 (543)
.+.+.. +..+++|+.|++++|.+++. .+..+++|+.|++++|.+.. .| +..+++|+.|++++|.+.+..
T Consensus 181 ~l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~-- 249 (457)
T 3bz5_A 181 KITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD-- 249 (457)
T ss_dssp CCCCCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC--
T ss_pred ccceec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC--
Confidence 998642 77899999999999999855 37889999999999999986 44 788999999999999998764
Q ss_pred cccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCc--------c
Q 040468 259 EFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPN--------R 330 (543)
Q Consensus 259 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~--------~ 330 (543)
+..+++|+.|+++++ +|+.+++++|...+..+ +..+++|+.|++++|...+.+|. .
T Consensus 250 -~~~l~~L~~L~l~~n-------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~ 313 (457)
T 3bz5_A 250 -VSTLSKLTTLHCIQT-------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD 313 (457)
T ss_dssp -CTTCTTCCEEECTTC-------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred -HHHCCCCCEEeccCC-------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEec
Confidence 456778888887765 34556666776554443 45667788888887765444332 2
Q ss_pred CCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccc
Q 040468 331 IDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSG 373 (543)
Q Consensus 331 l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~ 373 (543)
+..+++|+.|++++|++++ ++ +..+++|+.|++++|++.+
T Consensus 314 l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 314 LSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB
T ss_pred hhhcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC
Confidence 4555677777777777775 32 6677777777777777753
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.6e-32 Score=271.66 Aligned_cols=311 Identities=20% Similarity=0.215 Sum_probs=200.4
Q ss_pred CCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCC
Q 040468 92 SHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLE 171 (543)
Q Consensus 92 ~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~ 171 (543)
.++++++|+++++.++ .+|..++..+++|++|++++|.+.+..+..+.++++|++|++++|.+. .++...+..+++|+
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCC
Confidence 4678888999888887 777776666888999999888888666678888888888888888887 55555555678888
Q ss_pred EEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCc
Q 040468 172 ILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNN 251 (543)
Q Consensus 172 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 251 (543)
+|++++|.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.+... .+..+++|+.+++++|.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence 888888877755544556777777777777777655555666667777777777666532 13445556666666555
Q ss_pred ccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccC
Q 040468 252 LEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRI 331 (543)
Q Consensus 252 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l 331 (543)
+.+. ...++ |++|++++|.+...... ..++|++|++++|.+++. .++
T Consensus 198 l~~~-----~~~~~-----------------------L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~--~~l 244 (390)
T 3o6n_A 198 LSTL-----AIPIA-----------------------VEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWL 244 (390)
T ss_dssp CSEE-----ECCSS-----------------------CSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCC--GGG
T ss_pred cccc-----CCCCc-----------------------ceEEECCCCeeeecccc---ccccccEEECCCCCCccc--HHH
Confidence 4422 12234 44455555444433221 124666666666666532 355
Q ss_pred CCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 040468 332 DRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTK 411 (543)
Q Consensus 332 ~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 411 (543)
..+++|+.|++++|.+++..|..+..+++|++|++++|.+.+ +|.....
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~------------------------------ 293 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQP------------------------------ 293 (390)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSC------------------------------
T ss_pred cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCC------------------------------
Confidence 666666666666666665556666666666666666666542 1111100
Q ss_pred cccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhccccc
Q 040468 412 TALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKI 491 (543)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L 491 (543)
+++|++|++++|+++ .+|..+..+++|
T Consensus 294 ----------------------------------------------------l~~L~~L~L~~n~l~-~~~~~~~~l~~L 320 (390)
T 3o6n_A 294 ----------------------------------------------------IPTLKVLDLSHNHLL-HVERNQPQFDRL 320 (390)
T ss_dssp ----------------------------------------------------CTTCCEEECCSSCCC-CCGGGHHHHTTC
T ss_pred ----------------------------------------------------CCCCCEEECCCCcce-ecCccccccCcC
Confidence 456667777777666 566666666777
Q ss_pred CeeeCcCCccccccChhhhccCCCCeeeCCCCcCcc
Q 040468 492 HALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG 527 (543)
Q Consensus 492 ~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~ 527 (543)
++|+|++|.+++. + +..+++|+.|++++|++.+
T Consensus 321 ~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 321 ENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp SEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred CEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence 7777777776633 2 4556667777777776654
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.3e-31 Score=263.37 Aligned_cols=307 Identities=23% Similarity=0.302 Sum_probs=200.6
Q ss_pred CcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCC
Q 040468 90 IHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFS 169 (543)
Q Consensus 90 ~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 169 (543)
+..+++|++|+++++.+. .++. +.. +++|++|++++|.+++. +. +.++++|++|++++|.+. .++ .+..+++
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~~-~~~-~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~-~~~--~~~~l~~ 111 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQG-IEY-LTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKIT-DIS--ALQNLTN 111 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCTT-GGG-CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCG--GGTTCTT
T ss_pred chhcccccEEEEeCCccc-cchh-hhh-cCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCccc-Cch--HHcCCCc
Confidence 446677777777777766 4443 333 67777777777777633 22 666777777777777666 333 2444666
Q ss_pred CCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccC
Q 040468 170 LEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPN 249 (543)
Q Consensus 170 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 249 (543)
|++|++++|.+..... +..+++|+.|++++|...... ..+..+++|++|++++|.+.
T Consensus 112 L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~-------------------- 168 (347)
T 4fmz_A 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVK-------------------- 168 (347)
T ss_dssp CSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCC--------------------
T ss_pred CCEEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcC--------------------
Confidence 6666666666554322 455556666666555433222 22444555555555555444
Q ss_pred CcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCc
Q 040468 250 NNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPN 329 (543)
Q Consensus 250 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~ 329 (543)
+..+ +..+++|+.|++++|.+.+... ...+++|+.+++++|.+++..+ +..+++|++|++++|.+++..+
T Consensus 169 ----~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~- 238 (347)
T 4fmz_A 169 ----DVTP--IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP- 238 (347)
T ss_dssp ----CCGG--GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred ----Cchh--hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-
Confidence 3211 3344455555555554443222 2235556666666666654433 5667888888888888874433
Q ss_pred cCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 040468 330 RIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSY 409 (543)
Q Consensus 330 ~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 409 (543)
+..+++|+.|++++|.+++. ..+..+++|++|++++|.+.+. + .+.
T Consensus 239 -~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~~~----------------------------- 284 (347)
T 4fmz_A 239 -LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-S-VLN----------------------------- 284 (347)
T ss_dssp -GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGG-----------------------------
T ss_pred -hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-h-hhc-----------------------------
Confidence 78888999999999988743 4578899999999999987531 1 111
Q ss_pred cccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhccc
Q 040468 410 TKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLT 489 (543)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~ 489 (543)
.+++|++|++++|++++..|..+..++
T Consensus 285 -----------------------------------------------------~l~~L~~L~L~~n~l~~~~~~~l~~l~ 311 (347)
T 4fmz_A 285 -----------------------------------------------------NLSQLNSLFLNNNQLGNEDMEVIGGLT 311 (347)
T ss_dssp -----------------------------------------------------GCTTCSEEECCSSCCCGGGHHHHHTCT
T ss_pred -----------------------------------------------------CCCCCCEEECcCCcCCCcChhHhhccc
Confidence 167899999999999977788899999
Q ss_pred ccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCc
Q 040468 490 KIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 526 (543)
Q Consensus 490 ~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~ 526 (543)
+|++|++++|++++..| +..+++|+.|++++|+|+
T Consensus 312 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 312 NLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp TCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 99999999999997666 889999999999999986
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.6e-32 Score=271.63 Aligned_cols=266 Identities=23% Similarity=0.252 Sum_probs=203.3
Q ss_pred cCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCE
Q 040468 68 NNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLAR 147 (543)
Q Consensus 68 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~ 147 (543)
.+.++++|+++++.+....+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+.++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 4689999999999987666666889999999999999998 555544455999999999999999877888999999999
Q ss_pred EecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCc
Q 040468 148 LDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNH 227 (543)
Q Consensus 148 L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 227 (543)
|++++|.+. .++..++..+++|++|++++|.+....+..+..+++|+.|++++|.++.. .+..+++|+.+++++|.
T Consensus 122 L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 122 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred EECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence 999999999 88888877899999999999999988778899999999999999998854 35678999999999998
Q ss_pred CCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCC
Q 040468 228 LSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVI 307 (543)
Q Consensus 228 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 307 (543)
+.. +...++|+.+++++|.+... +.. ..++|+.|++++|.+.+. ..+
T Consensus 198 l~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~-------------------------~~l 244 (390)
T 3o6n_A 198 LST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT-------------------------AWL 244 (390)
T ss_dssp CSE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC-------------------------GGG
T ss_pred ccc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc-------------------------HHH
Confidence 762 34557899999999988755 222 235666666666655532 123
Q ss_pred CCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468 308 PDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372 (543)
Q Consensus 308 ~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 372 (543)
..+++|++|++++|.+++..|..+..+++|+.|++++|+++ .++..+..+++|++|++++|++.
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~ 308 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 308 (390)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC
T ss_pred cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce
Confidence 44556666666666665555555666666666666666665 23444455666666666666554
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.8e-31 Score=262.45 Aligned_cols=307 Identities=21% Similarity=0.267 Sum_probs=216.6
Q ss_pred ccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCC
Q 040468 41 LYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPG 120 (543)
Q Consensus 41 l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~ 120 (543)
+..+++|++|+++++.+. .++. +..+++|++|++++|++.+..+ +..+++|++|++++|.++ .++ .+. .+++
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~-~~~-~l~~ 111 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DIS-ALQ-NLTN 111 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGT-TCTT
T ss_pred chhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-Cch-HHc-CCCc
Confidence 345677777777777665 3443 4667777777777776654433 667777777777777666 343 233 3677
Q ss_pred CcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCC
Q 040468 121 LMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLD 200 (543)
Q Consensus 121 L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 200 (543)
|++|++++|.+.+. +. +..+++|++|++++|......+. +..+++|++|++++|.+..... +..+++|+.|+++
T Consensus 112 L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 112 LRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN 185 (347)
T ss_dssp CSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECT
T ss_pred CCEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEcc
Confidence 77777777776633 22 66677777777777754433332 4457777777777777664332 5667777777777
Q ss_pred CCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCC
Q 040468 201 GNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTL 280 (543)
Q Consensus 201 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 280 (543)
+|.+... +. +..+++|+.+++++|.+....+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+.
T Consensus 186 ~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~- 258 (347)
T 4fmz_A 186 YNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI- 258 (347)
T ss_dssp TSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-
T ss_pred CCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-
Confidence 7776643 22 6677778888888777764433 6677788888888887775533 67778888888888877653
Q ss_pred CCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCC
Q 040468 281 PSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKE 360 (543)
Q Consensus 281 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~ 360 (543)
+.+..+++|+.|++++|.+++. ..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..| +..+++
T Consensus 259 ~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~ 334 (347)
T 4fmz_A 259 NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSK 334 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTT
T ss_pred hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhc
Confidence 3444578888888888888764 346788999999999999998888889999999999999999986555 788999
Q ss_pred CCEEeCCCCccc
Q 040468 361 VQLIDLSHNNLS 372 (543)
Q Consensus 361 L~~L~l~~n~~~ 372 (543)
|++|++++|+++
T Consensus 335 L~~L~l~~N~i~ 346 (347)
T 4fmz_A 335 MDSADFANQVIK 346 (347)
T ss_dssp CSEESSSCC---
T ss_pred cceeehhhhccc
Confidence 999999999875
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=4.2e-31 Score=278.22 Aligned_cols=311 Identities=20% Similarity=0.218 Sum_probs=203.4
Q ss_pred CCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCC
Q 040468 92 SHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLE 171 (543)
Q Consensus 92 ~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~ 171 (543)
.+.+++.++++++.+. .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|+
T Consensus 49 ~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCC
Confidence 4578888888888887 777776666888888988888888766778888888888888888887 55555566678888
Q ss_pred EEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCc
Q 040468 172 ILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNN 251 (543)
Q Consensus 172 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 251 (543)
+|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+... .+..+++|+.+++++|.
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 203 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCc
Confidence 888888877765555566777777777777777766666667777777777777766532 13445566666666655
Q ss_pred ccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccC
Q 040468 252 LEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRI 331 (543)
Q Consensus 252 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l 331 (543)
+.+. ...++|+.|++++| .+....... .++|+.|++++|.+++ +.++
T Consensus 204 l~~l-----~~~~~L~~L~ls~n-----------------------~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l 250 (597)
T 3oja_B 204 LSTL-----AIPIAVEELDASHN-----------------------SINVVRGPV---NVELTILKLQHNNLTD--TAWL 250 (597)
T ss_dssp CSEE-----ECCTTCSEEECCSS-----------------------CCCEEECSC---CSCCCEEECCSSCCCC--CGGG
T ss_pred cccc-----cCCchhheeeccCC-----------------------ccccccccc---CCCCCEEECCCCCCCC--Chhh
Confidence 4432 12234445555444 444332221 1456666666666653 2456
Q ss_pred CCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 040468 332 DRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTK 411 (543)
Q Consensus 332 ~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 411 (543)
..+++|+.|++++|.+++..|..|..+++|+.|++++|.+.+ +|..+..
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~------------------------------ 299 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQP------------------------------ 299 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSC------------------------------
T ss_pred ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCccccc------------------------------
Confidence 666666777777666666666666666777777777666643 1211100
Q ss_pred cccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhccccc
Q 040468 412 TALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKI 491 (543)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L 491 (543)
+++|++|+|++|.++ .+|..+..+++|
T Consensus 300 ----------------------------------------------------l~~L~~L~Ls~N~l~-~i~~~~~~l~~L 326 (597)
T 3oja_B 300 ----------------------------------------------------IPTLKVLDLSHNHLL-HVERNQPQFDRL 326 (597)
T ss_dssp ----------------------------------------------------CTTCCEEECCSSCCC-CCGGGHHHHTTC
T ss_pred ----------------------------------------------------CCCCcEEECCCCCCC-ccCcccccCCCC
Confidence 456677777777766 566666667777
Q ss_pred CeeeCcCCccccccChhhhccCCCCeeeCCCCcCcc
Q 040468 492 HALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG 527 (543)
Q Consensus 492 ~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~ 527 (543)
+.|+|++|.+++. | +..+++|+.|++++|++.+
T Consensus 327 ~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 327 ENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp SEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred CEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCC
Confidence 7777777776633 2 4556677777777777654
No 40
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=1.1e-34 Score=296.92 Aligned_cols=391 Identities=16% Similarity=0.119 Sum_probs=236.4
Q ss_pred CCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccc----cCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCC--
Q 040468 46 DLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFG----SFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLP-- 119 (543)
Q Consensus 46 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~----~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~-- 119 (543)
+|++|+++++++++.....++..+++|++|++++|++.+ .++..+..+++|++|++++|.+.+..+..++..++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 445555555555433333334555566666666665532 22344555666777777766665444444554454
Q ss_pred --CCcEEEcCCCcCcc----CCchhhcCCCCCCEEecccccccccCchHhhh----CCCCCCEEEccCCcCCCcC----c
Q 040468 120 --GLMEFNLSRNAFNG----SIPSSFADMQMLARLDISYNQLTGEIPERMAT----GCFSLEILALSNNSLQGHI----F 185 (543)
Q Consensus 120 --~L~~L~L~~~~i~~----~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~----~~~~L~~L~l~~n~~~~~~----~ 185 (543)
+|++|++++|.++. .++..+.++++|++|++++|.+.+..+..+.. ..++|++|++++|.++... +
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 57788887777763 34667777788888888888776433333322 2446777777777766433 3
Q ss_pred ccccCCCCcCEEeCCCCccCccCchhhh-----cCCCCCEEEccCCcCCCc----ccccccCCCCCcEEEccCCcccccC
Q 040468 186 SKKFSLTNLMTLQLDGNNFSGEIPESLS-----KCRRLGGLYLSDNHLSGE----IPRWLGNLSFLVDIIMPNNNLEGLI 256 (543)
Q Consensus 186 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~ 256 (543)
..+..+++|++|++++|.+....+..+. ..++|++|++++|.+... .+..+..+++|++|++++|.+.+..
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence 3344567777777777776543332222 244666666666666532 2344445566666666665554321
Q ss_pred cccccCCCCCcEEEccCCcCccCCCCCC-CcccccEEEcCCCccccc----cCCCCCCCCCccEEEccccccccccCccC
Q 040468 257 PIEFCQLRFLRILDLSNNTIFGTLPSCF-SPAYIEQVHLSKNKIEGR----LESVIPDSPNLVTLDLSYNCLHGSIPNRI 331 (543)
Q Consensus 257 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~i~~~~~~~l 331 (543)
...+. +..+ .+++|+.|++++|.+++. .+..+..+++|++|++++|.+++..+..+
T Consensus 244 ~~~l~-------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 304 (461)
T 1z7x_W 244 MAELC-------------------PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 304 (461)
T ss_dssp HHHHH-------------------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred HHHHH-------------------HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHH
Confidence 11100 0001 134555555555555442 23344557888888888888765433333
Q ss_pred C-----CCCCCCEEEccCcccccc----cchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q 040468 332 D-----RLPQLSYLLLANNYIEGE----IPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRA 402 (543)
Q Consensus 332 ~-----~~~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 402 (543)
. ..++|+.|++++|.+++. ++..+..+++|++|++++|.+.+..+..+...-.
T Consensus 305 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~------------------ 366 (461)
T 1z7x_W 305 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLG------------------ 366 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHT------------------
T ss_pred HHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHc------------------
Confidence 2 236899999999988754 4566677899999999999886533322211000
Q ss_pred CCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCcccc---
Q 040468 403 SGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTG--- 479 (543)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~--- 479 (543)
...++|++|++++|++++
T Consensus 367 -----------------------------------------------------------~~~~~L~~L~L~~n~i~~~~~ 387 (461)
T 1z7x_W 367 -----------------------------------------------------------QPGSVLRVLWLADCDVSDSSC 387 (461)
T ss_dssp -----------------------------------------------------------STTCCCCEEECTTSCCCHHHH
T ss_pred -----------------------------------------------------------CCCCceEEEECCCCCCChhhH
Confidence 004589999999999986
Q ss_pred -ccChhhhcccccCeeeCcCCccccccChhhh-----ccCCCCeeeCCCCcCcccCCcc
Q 040468 480 -EIPTQIGYLTKIHALNLSHNNLTGTIPTTFS-----NLKQIESLDLSYNLLHGKIPSQ 532 (543)
Q Consensus 480 -~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~-----~l~~L~~L~l~~n~i~~~~~~~ 532 (543)
.+|..+..+++|++|++++|++++.....+. ...+|+.|++.++.+....++.
T Consensus 388 ~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~ 446 (461)
T 1z7x_W 388 SSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR 446 (461)
T ss_dssp HHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHH
T ss_pred HHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHH
Confidence 6788888999999999999999865443332 2346888888888876544433
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=7.1e-31 Score=276.49 Aligned_cols=289 Identities=21% Similarity=0.190 Sum_probs=216.5
Q ss_pred cCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCE
Q 040468 68 NNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLAR 147 (543)
Q Consensus 68 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~ 147 (543)
.+.+++.++++++.+....+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+++..+..|+++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 4688999999999987777777889999999999999998 454434444999999999999999877888999999999
Q ss_pred EecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCc
Q 040468 148 LDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNH 227 (543)
Q Consensus 148 L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 227 (543)
|++++|.+. .+|..++..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+. .+..+++|+.+++++|.
T Consensus 128 L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 128 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 203 (597)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred EEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCc
Confidence 999999999 88888877899999999999999988888899999999999999998854 25678899999999997
Q ss_pred CCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCC
Q 040468 228 LSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVI 307 (543)
Q Consensus 228 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 307 (543)
+.. +...++|+.|++++|.+....+. ..++|+.|++++|.+.+. +.+..+++|+.|++++|.+++..+..+
T Consensus 204 l~~-----l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 204 LST-----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp CSE-----EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred ccc-----ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHh
Confidence 752 34567899999999998755332 225677888887776642 223335556666666666655555555
Q ss_pred CCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468 308 PDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372 (543)
Q Consensus 308 ~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 372 (543)
..+++|++|++++|.++ .+|..+..+++|+.|++++|+++ .+|..+..+++|++|++++|++.
T Consensus 275 ~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 275 VKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp TTCSSCCEEECTTSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred cCccCCCEEECCCCCCC-CCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCC
Confidence 55566666666666555 23444455555566666655555 34444555555555555555553
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=7.6e-34 Score=290.66 Aligned_cols=357 Identities=19% Similarity=0.154 Sum_probs=232.7
Q ss_pred CCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCcc----CCchhhcCCCCCCEEecccccccccCchHhhhCCC-
Q 040468 94 QKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNG----SIPSSFADMQMLARLDISYNQLTGEIPERMATGCF- 168 (543)
Q Consensus 94 ~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~----~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~- 168 (543)
++|++|+++++.+++.....++..+++|++|++++|.++. .++..+..+++|++|++++|.+.+..+..++..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 3455666666655533233333335666666666666552 23444555566666666666655333444444444
Q ss_pred ---CCCEEEccCCcCCC----cCcccccCCCCcCEEeCCCCccCccCchhhh-----cCCCCCEEEccCCcCCCcc----
Q 040468 169 ---SLEILALSNNSLQG----HIFSKKFSLTNLMTLQLDGNNFSGEIPESLS-----KCRRLGGLYLSDNHLSGEI---- 232 (543)
Q Consensus 169 ---~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~---- 232 (543)
+|++|++++|.+.. ..+..+..+++|++|++++|.+....+..+. ..++|++|++++|.+....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 46666666666653 2245556666777777777766533222222 2446777777777666422
Q ss_pred cccccCCCCCcEEEccCCcccccCccccc-----CCCCCcEEEccCCcCccCC----CCC-CCcccccEEEcCCCccccc
Q 040468 233 PRWLGNLSFLVDIIMPNNNLEGLIPIEFC-----QLRFLRILDLSNNTIFGTL----PSC-FSPAYIEQVHLSKNKIEGR 302 (543)
Q Consensus 233 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~----~~~-~~~~~L~~L~l~~~~~~~~ 302 (543)
+..+..+++|++|++++|.+.+..+..+. ..++|+.|++++|.+.+.. +.. ..+++|++|++++|.+++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 34455667777777777776544333332 2457788888887766431 111 1257788888888877653
Q ss_pred c-----CCCCCCCCCccEEEccccccccc----cCccCCCCCCCCEEEccCcccccccchhhhC-----CCCCCEEeCCC
Q 040468 303 L-----ESVIPDSPNLVTLDLSYNCLHGS----IPNRIDRLPQLSYLLLANNYIEGEIPVQLCQ-----LKEVQLIDLSH 368 (543)
Q Consensus 303 ~-----~~~~~~~~~L~~L~l~~~~i~~~----~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~-----l~~L~~L~l~~ 368 (543)
. ...+..+++|++|++++|.+++. ++..+..+++|+.|++++|.+++..+..+.. .++|++|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 2 23344678999999999999853 5667778999999999999998655544443 36999999999
Q ss_pred CcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccce
Q 040468 369 NNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETI 448 (543)
Q Consensus 369 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (543)
|.+.+.....+...
T Consensus 323 n~l~~~~~~~l~~~------------------------------------------------------------------ 336 (461)
T 1z7x_W 323 CSFTAACCSHFSSV------------------------------------------------------------------ 336 (461)
T ss_dssp SCCBGGGHHHHHHH------------------------------------------------------------------
T ss_pred CCCchHHHHHHHHH------------------------------------------------------------------
Confidence 99864311111000
Q ss_pred eeeccCCcccccccccCceeEEEcccCccccccChhhhc-----ccccCeeeCcCCcccc----ccChhhhccCCCCeee
Q 040468 449 QFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGY-----LTKIHALNLSHNNLTG----TIPTTFSNLKQIESLD 519 (543)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~-----l~~L~~L~ls~n~i~~----~~~~~~~~l~~L~~L~ 519 (543)
...+++|++|++++|++++..+..+.. .++|++|+|++|.+++ .+|..+..+++|+.|+
T Consensus 337 ------------l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~ 404 (461)
T 1z7x_W 337 ------------LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 404 (461)
T ss_dssp ------------HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEE
T ss_pred ------------HhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEE
Confidence 011579999999999999665655543 6799999999999996 7788999999999999
Q ss_pred CCCCcCccc
Q 040468 520 LSYNLLHGK 528 (543)
Q Consensus 520 l~~n~i~~~ 528 (543)
+++|+++..
T Consensus 405 l~~N~i~~~ 413 (461)
T 1z7x_W 405 LSNNCLGDA 413 (461)
T ss_dssp CCSSSCCHH
T ss_pred CCCCCCCHH
Confidence 999999754
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=5.9e-29 Score=242.59 Aligned_cols=242 Identities=27% Similarity=0.324 Sum_probs=129.9
Q ss_pred CCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEE
Q 040468 95 KLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILA 174 (543)
Q Consensus 95 ~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~ 174 (543)
+++.++++++.++ .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+. .++...+..+++|++|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCcc-ccCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEE
Confidence 4666666666555 5554442 35666666666655444445555555555555555555 22222233344455555
Q ss_pred ccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccc
Q 040468 175 LSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEG 254 (543)
Q Consensus 175 l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 254 (543)
+++|.+.. +|..+. ++|++|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 109 L~~n~l~~-------------------------l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 161 (332)
T 2ft3_A 109 ISKNHLVE-------------------------IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 161 (332)
T ss_dssp CCSSCCCS-------------------------CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG
T ss_pred CCCCcCCc-------------------------cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc
Confidence 54444432 121111 345555555555443333445555555555555555532
Q ss_pred --cCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCC
Q 040468 255 --LIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRID 332 (543)
Q Consensus 255 --~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~ 332 (543)
..+..+..+ +|+.|++++|.+.+..... .++|++|++++|.+++..+..+..+++|++|++++|++++..+..+.
T Consensus 162 ~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 238 (332)
T 2ft3_A 162 SGFEPGAFDGL-KLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238 (332)
T ss_dssp GGSCTTSSCSC-CCSCCBCCSSBCSSCCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred CCCCcccccCC-ccCEEECcCCCCCccCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence 334444444 5666666666655432222 24566666666666555555566666666666666666655555566
Q ss_pred CCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468 333 RLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372 (543)
Q Consensus 333 ~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 372 (543)
.+++|+.|++++|+++ .+|..+..+++|++|++++|++.
T Consensus 239 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp GCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCC
T ss_pred CCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCC
Confidence 6666666666666665 45555666666666666666665
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=5.2e-29 Score=243.01 Aligned_cols=288 Identities=23% Similarity=0.265 Sum_probs=219.6
Q ss_pred CCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEc
Q 040468 144 MLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYL 223 (543)
Q Consensus 144 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 223 (543)
+++.++++++.+. .+|..+ .++++.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4666777777666 566544 357778888888777666667788888899999888888777888888999999999
Q ss_pred cCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCcc--CCCCCCCcccccEEEcCCCcccc
Q 040468 224 SDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFG--TLPSCFSPAYIEQVHLSKNKIEG 301 (543)
Q Consensus 224 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~ 301 (543)
++|.+. ..|..+. ++|++|++++|.+....+..+..+++|+.|++++|.+.. ..+..+...+|+.|++++|.+++
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG 186 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc
Confidence 999887 4444333 789999999999988777778899999999999998863 44444443388899999998876
Q ss_pred ccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCccc
Q 040468 302 RLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVN 381 (543)
Q Consensus 302 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 381 (543)
.+.... ++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|.+. .+|..+..
T Consensus 187 l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 IPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp CCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred cCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 443322 68888999999888776778888889999999999888766677888889999999988876 45544322
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccc
Q 040468 382 TSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQG 461 (543)
Q Consensus 382 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (543)
T Consensus 263 -------------------------------------------------------------------------------- 262 (332)
T 2ft3_A 263 -------------------------------------------------------------------------------- 262 (332)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCceeEEEcccCccccccChhhhc------ccccCeeeCcCCccc--cccChhhhccCCCCeeeCCCCc
Q 040468 462 RILTSMFGIDLSCNKLTGEIPTQIGY------LTKIHALNLSHNNLT--GTIPTTFSNLKQIESLDLSYNL 524 (543)
Q Consensus 462 ~~~~~L~~L~ls~n~l~~~~~~~l~~------l~~L~~L~ls~n~i~--~~~~~~~~~l~~L~~L~l~~n~ 524 (543)
+++|++|++++|+++...+..|.. .++|+.|++++|++. +..|..|..+++|+.+++++|+
T Consensus 263 --l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 263 --LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp --CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred --CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 568888999988888544455543 467888888888876 5677788888888888888875
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.5e-28 Score=239.68 Aligned_cols=243 Identities=24% Similarity=0.312 Sum_probs=144.8
Q ss_pred CCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeC
Q 040468 120 GLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQL 199 (543)
Q Consensus 120 ~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 199 (543)
+++.++++++.++ .+|..+. +.+++|++++|.+. .++...+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 6777888777776 4454442 56777888877777 555545556777777777777777666666777777777777
Q ss_pred CCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccc--cCcccccCCCCCcEEEccCCcCc
Q 040468 200 DGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEG--LIPIEFCQLRFLRILDLSNNTIF 277 (543)
Q Consensus 200 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~ 277 (543)
++|.+. .+|..+. ++|++|++++|.+....+..+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.+.
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 777766 3333322 567777777777665555556667777777777766643 34455666666666666666655
Q ss_pred cCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhC
Q 040468 278 GTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQ 357 (543)
Q Consensus 278 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~ 357 (543)
...... .++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..
T Consensus 185 ~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 185 TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred cCCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence 432222 245555555555555444444455555555555555555443444455555555555555554 44444445
Q ss_pred CCCCCEEeCCCCccc
Q 040468 358 LKEVQLIDLSHNNLS 372 (543)
Q Consensus 358 l~~L~~L~l~~n~~~ 372 (543)
+++|++|++++|++.
T Consensus 262 l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 262 HKYIQVVYLHNNNIS 276 (330)
T ss_dssp CSSCCEEECCSSCCC
T ss_pred CCCcCEEECCCCcCC
Confidence 555555555555543
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=3.7e-28 Score=236.77 Aligned_cols=289 Identities=19% Similarity=0.223 Sum_probs=122.9
Q ss_pred CCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEE
Q 040468 46 DLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFN 125 (543)
Q Consensus 46 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~ 125 (543)
++++++++++.++ .+|..+ .+++++|++++|++.+..+..+..+++|++|++++|.+.+..|..+.. +++|++|+
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTT-CTTCCEEE
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcC-CCCCCEEE
Confidence 3444444444443 333322 234444444444444443344444444444444444444222222222 44444444
Q ss_pred cCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCC--cCcccccCCCCcCEEeCCCCc
Q 040468 126 LSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQG--HIFSKKFSLTNLMTLQLDGNN 203 (543)
Q Consensus 126 L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~~~ 203 (543)
+++|.++ .+|..+. ++|++|++++|.+. .++...+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.
T Consensus 107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp CCSSCCS-BCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred CCCCcCC-ccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 4444444 2222221 34444444444444 3333333334444444444444331 222333334444444444444
Q ss_pred cCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCC
Q 040468 204 FSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSC 283 (543)
Q Consensus 204 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 283 (543)
+.. .|..+. ++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..++
T Consensus 183 l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------------------- 240 (330)
T 1xku_A 183 ITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP------------------- 240 (330)
T ss_dssp CCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST-------------------
T ss_pred ccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC-------------------
Confidence 331 121111 3344444444444333333344444444444444444333333333333
Q ss_pred CCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCC------CCCCCEEEccCccccc--ccchhh
Q 040468 284 FSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDR------LPQLSYLLLANNYIEG--EIPVQL 355 (543)
Q Consensus 284 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~------~~~L~~L~l~~n~i~~--~~~~~l 355 (543)
+|+.|++++|.++ ..+..+..+++|++|++++|++++..+..|.. .+.++.|++.+|++.. ..|..|
T Consensus 241 ----~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f 315 (330)
T 1xku_A 241 ----HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 315 (330)
T ss_dssp ----TCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG
T ss_pred ----CCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccc
Confidence 4444444444443 22223444555555555555555433333322 2556666777666642 345566
Q ss_pred hCCCCCCEEeCCCCc
Q 040468 356 CQLKEVQLIDLSHNN 370 (543)
Q Consensus 356 ~~l~~L~~L~l~~n~ 370 (543)
..+++++.+++++|+
T Consensus 316 ~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 316 RCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTCCCGGGEEC----
T ss_pred ccccceeEEEecccC
Confidence 666777777776663
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=2e-29 Score=243.23 Aligned_cols=254 Identities=30% Similarity=0.447 Sum_probs=193.7
Q ss_pred CCcCEEeCCCCccCc--cCchhhhcCCCCCEEEccC-CcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcE
Q 040468 192 TNLMTLQLDGNNFSG--EIPESLSKCRRLGGLYLSD-NHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRI 268 (543)
Q Consensus 192 ~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 268 (543)
.+++.|+++++.+.+ ..|..+..+++|++|++++ |.+....|..+..+++|++|++++|.+.+..|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 355666666666655 5556666666666666663 5555555666666666777777666666666666666677777
Q ss_pred EEccCCcCccCCCCCC-CcccccEEEcCCCccccccCCCCCCCC-CccEEEccccccccccCccCCCCCCCCEEEccCcc
Q 040468 269 LDLSNNTIFGTLPSCF-SPAYIEQVHLSKNKIEGRLESVIPDSP-NLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNY 346 (543)
Q Consensus 269 L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~ 346 (543)
|++++|.+.+..+..+ .+++|+.|++++|.+++..+..+..++ +|++|++++|++++..|..+..++ |+.|++++|+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 7777776665444433 366777777777777766666677776 899999999999888888888887 9999999999
Q ss_pred cccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCC
Q 040468 347 IEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGR 426 (543)
Q Consensus 347 i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (543)
+++..+..+..+++|++|++++|.+.+..|. +..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~--------------------------------------------- 242 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGL--------------------------------------------- 242 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCC---------------------------------------------
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccc---------------------------------------------
Confidence 9988888899999999999999998643332 111
Q ss_pred CCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccC
Q 040468 427 GYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIP 506 (543)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~ 506 (543)
+++|++|++++|++++.+|..+..+++|++|+|++|++++.+|
T Consensus 243 -------------------------------------l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 243 -------------------------------------SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp -------------------------------------CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred -------------------------------------cCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence 5789999999999998899999999999999999999998888
Q ss_pred hhhhccCCCCeeeCCCCcCcccCC
Q 040468 507 TTFSNLKQIESLDLSYNLLHGKIP 530 (543)
Q Consensus 507 ~~~~~l~~L~~L~l~~n~i~~~~~ 530 (543)
.. ..+++|+.+++++|+..+..|
T Consensus 286 ~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 286 QG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CC-ccccccChHHhcCCCCccCCC
Confidence 77 889999999999999554433
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=1e-28 Score=238.39 Aligned_cols=249 Identities=28% Similarity=0.416 Sum_probs=179.8
Q ss_pred CceeEEEeeCCCCCC--CcchhccCCCCCCEEeccC-CcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCC
Q 040468 21 FQLTSISLSGYIDGG--TFPKFLYHQHDLKNANLSH-LNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLA 97 (543)
Q Consensus 21 ~~L~~L~L~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~ 97 (543)
.++++|+|+++.+.+ .+|..+.++++|++|++++ +.+.+.+|..+ .++++|++|++++|.+.+..|..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 368888888888888 7788888888888888885 77877777764 7788888888888888778888888888888
Q ss_pred EEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCC-CCCEEecccccccccCchHhhhCCCCCCEEEcc
Q 040468 98 TLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQ-MLARLDISYNQLTGEIPERMATGCFSLEILALS 176 (543)
Q Consensus 98 ~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~-~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~ 176 (543)
+|++++|.+.+.+|..+.. +++|++|++++|.+++.+|..+..++ +|++|++++|.+.+.+|..+.. ++ |++|+++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~-l~-L~~L~Ls 205 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LN-LAFVDLS 205 (313)
T ss_dssp EEECCSSEEESCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG-CC-CSEEECC
T ss_pred EEeCCCCccCCcCChHHhc-CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC-Cc-ccEEECc
Confidence 8888888888677777766 78888888888888777788888877 8888888888887666655543 44 7777777
Q ss_pred CCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccC
Q 040468 177 NNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLI 256 (543)
Q Consensus 177 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 256 (543)
+|.+.+..+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+....|..+..+++|+.|++++|.+.+.+
T Consensus 206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i 284 (313)
T 1ogq_A 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284 (313)
T ss_dssp SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred CCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence 7777666666666677777777777766643333 455566666666666665555555556666666666666655554
Q ss_pred cccccCCCCCcEEEccCCc
Q 040468 257 PIEFCQLRFLRILDLSNNT 275 (543)
Q Consensus 257 ~~~l~~l~~L~~L~l~~~~ 275 (543)
|.. ..+++|+.+++.+|.
T Consensus 285 p~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 285 PQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCS-TTGGGSCGGGTCSSS
T ss_pred CCC-ccccccChHHhcCCC
Confidence 443 445555555555554
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=5.2e-31 Score=278.37 Aligned_cols=377 Identities=14% Similarity=0.063 Sum_probs=185.5
Q ss_pred cCCCCcEEEccCCcccccCCCCCcC-CCC-CCEEEcCCCc-cccCCchhhhcCCCCCcEEEcCCCcCccC----Cchhhc
Q 040468 68 NNTNLETLLLANNSLFGSFRMPIHS-HQK-LATLDVSNNF-FQGHIPVEIGTYLPGLMEFNLSRNAFNGS----IPSSFA 140 (543)
Q Consensus 68 ~l~~L~~L~L~~~~~~~~~~~~~~~-~~~-L~~L~ls~~~-i~~~~~~~~~~~l~~L~~L~L~~~~i~~~----~~~~l~ 140 (543)
.+++|++|+|+++.+.+..+..+.. +++ |++|++++|. +.......+...+++|++|++++|.+++. ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 4555555555555544333333322 222 5555555554 11111111222255555555555554432 122333
Q ss_pred CCCCCCEEecccccccccC---chHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccC---ccCchhhhc
Q 040468 141 DMQMLARLDISYNQLTGEI---PERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFS---GEIPESLSK 214 (543)
Q Consensus 141 ~l~~L~~L~L~~~~~~~~~---~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~---~~~~~~l~~ 214 (543)
.+++|++|++++|.+.+.. ...++..+++|+.|++++|.+.+ .+..+..+++|+.|++...... ......+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 4455555555555543111 11122335555555555555443 2334445555555555432211 112233444
Q ss_pred CCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCc-ccccCCCCCcEEEccCCcCccC-CCCCC-CcccccE
Q 040468 215 CRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIP-IEFCQLRFLRILDLSNNTIFGT-LPSCF-SPAYIEQ 291 (543)
Q Consensus 215 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~-~~~~~-~~~~L~~ 291 (543)
+++|+.+.+.++... ..+..+..+++|++|++++|.+.+... ..+..+++|+.|+++++ +.+. ..... .+++|++
T Consensus 269 ~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLEVLAQYCKQLKR 346 (592)
T ss_dssp CTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCE
T ss_pred cccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc-cCHHHHHHHHHhCCCCCE
Confidence 555555555553222 344445555566666666555433221 22345556666666522 2111 11111 1455666
Q ss_pred EEcCC-----------Cccccc-cCCCCCCCCCccEEEccccccccccCccCCC-CCCCCEEEcc----Ccccccc----
Q 040468 292 VHLSK-----------NKIEGR-LESVIPDSPNLVTLDLSYNCLHGSIPNRIDR-LPQLSYLLLA----NNYIEGE---- 350 (543)
Q Consensus 292 L~l~~-----------~~~~~~-~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~-~~~L~~L~l~----~n~i~~~---- 350 (543)
|++.+ +.+++. .......+++|++|+++.+.+++..+..+.. +++|+.|++. .|.+++.
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 66652 233322 1112234567777777666666555545544 6677777775 4455532
Q ss_pred -cchhhhCCCCCCEEeCCCCc--ccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCC
Q 040468 351 -IPVQLCQLKEVQLIDLSHNN--LSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRG 427 (543)
Q Consensus 351 -~~~~l~~l~~L~~L~l~~n~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (543)
++..+.++++|++|+++.|. +++..+..+
T Consensus 427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~------------------------------------------------ 458 (592)
T 3ogk_B 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI------------------------------------------------ 458 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH------------------------------------------------
T ss_pred HHHHHHHhCCCCCEEEEecCCCCccHHHHHHH------------------------------------------------
Confidence 33335567777777776543 221111000
Q ss_pred CcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccc-cChhhhcccccCeeeCcCCccccc-c
Q 040468 428 YPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGE-IPTQIGYLTKIHALNLSHNNLTGT-I 505 (543)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~~~l~~l~~L~~L~ls~n~i~~~-~ 505 (543)
...+++|++|++++|++++. ++..+..+++|++|+|++|.+++. .
T Consensus 459 ---------------------------------~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 505 (592)
T 3ogk_B 459 ---------------------------------GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAI 505 (592)
T ss_dssp ---------------------------------HHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHH
T ss_pred ---------------------------------HHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHH
Confidence 01156777777777777643 234456677777788877776644 3
Q ss_pred ChhhhccCCCCeeeCCCCcCccc
Q 040468 506 PTTFSNLKQIESLDLSYNLLHGK 528 (543)
Q Consensus 506 ~~~~~~l~~L~~L~l~~n~i~~~ 528 (543)
+..+..+++|+.|++++|+++..
T Consensus 506 ~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 506 AAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHhcCccCeeECcCCcCCHH
Confidence 33345677777888887777644
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=3.4e-30 Score=272.16 Aligned_cols=417 Identities=13% Similarity=0.035 Sum_probs=293.7
Q ss_pred ceeEEEeeCCCCC---CCcc------------hhccCCCCCCEEeccCCcccccCChhhhhcCCC-CcEEEccCCcc-cc
Q 040468 22 QLTSISLSGYIDG---GTFP------------KFLYHQHDLKNANLSHLNLSGEFPNWLVENNTN-LETLLLANNSL-FG 84 (543)
Q Consensus 22 ~L~~L~L~~~~~~---~~~~------------~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~-L~~L~L~~~~~-~~ 84 (543)
+|++|++++|... +..| .....+++|++|+|+++.+++..+..+...+++ |++|++++|.. ..
T Consensus 74 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~ 153 (592)
T 3ogk_B 74 NLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTT 153 (592)
T ss_dssp TCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEH
T ss_pred CCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCH
Confidence 6999999886431 1111 222378999999999998876666655443555 99999999862 11
Q ss_pred -cCCCCCcCCCCCCEEEcCCCccccCCch---hhhcCCCCCcEEEcCCCcCc----cCCchhhcCCCCCCEEeccccccc
Q 040468 85 -SFRMPIHSHQKLATLDVSNNFFQGHIPV---EIGTYLPGLMEFNLSRNAFN----GSIPSSFADMQMLARLDISYNQLT 156 (543)
Q Consensus 85 -~~~~~~~~~~~L~~L~ls~~~i~~~~~~---~~~~~l~~L~~L~L~~~~i~----~~~~~~l~~l~~L~~L~L~~~~~~ 156 (543)
..+.....+++|++|++++|.+.+.... .+...+++|++|++++|.++ ..++..+.++++|++|++++|.+.
T Consensus 154 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~ 233 (592)
T 3ogk_B 154 DGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL 233 (592)
T ss_dssp HHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG
T ss_pred HHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH
Confidence 1222235789999999999998754322 23344899999999999886 234455678899999999999888
Q ss_pred ccCchHhhhCCCCCCEEEccCCcCC---CcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCccc
Q 040468 157 GEIPERMATGCFSLEILALSNNSLQ---GHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIP 233 (543)
Q Consensus 157 ~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 233 (543)
.++. .+..+++|++|+++..... ......+..+++|+.+++.+.... ..+..+..+++|++|++++|.+.....
T Consensus 234 -~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~ 310 (592)
T 3ogk_B 234 -ELVG-FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDH 310 (592)
T ss_dssp -GGHH-HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHH
T ss_pred -HHHH-HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHH
Confidence 5664 4556999999999864322 233456677889999999886433 566777889999999999998653333
Q ss_pred -ccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccC-----------CcCccCCC-C-CCCcccccEEEcCCCcc
Q 040468 234 -RWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSN-----------NTIFGTLP-S-CFSPAYIEQVHLSKNKI 299 (543)
Q Consensus 234 -~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-----------~~~~~~~~-~-~~~~~~L~~L~l~~~~~ 299 (543)
..+..+++|+.|++.++......+.....+++|+.|++++ +.+++... . ...+++|++|++..+.+
T Consensus 311 ~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l 390 (592)
T 3ogk_B 311 CTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDI 390 (592)
T ss_dssp HHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCC
T ss_pred HHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCc
Confidence 3467899999999994433333334446788999999994 34432211 1 11278999999988888
Q ss_pred ccccCCCCCC-CCCccEEEcc----ccccccc-----cCccCCCCCCCCEEEccCcc--cccccchhhh-CCCCCCEEeC
Q 040468 300 EGRLESVIPD-SPNLVTLDLS----YNCLHGS-----IPNRIDRLPQLSYLLLANNY--IEGEIPVQLC-QLKEVQLIDL 366 (543)
Q Consensus 300 ~~~~~~~~~~-~~~L~~L~l~----~~~i~~~-----~~~~l~~~~~L~~L~l~~n~--i~~~~~~~l~-~l~~L~~L~l 366 (543)
++.....+.. +++|++|+++ .+.+++. ++..+..+++|+.|++++|. +++.....+. .+++|++|++
T Consensus 391 ~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L 470 (592)
T 3ogk_B 391 TNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLL 470 (592)
T ss_dssp CHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEE
T ss_pred cHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeec
Confidence 7654444443 8899999997 5566642 33346679999999998654 6655555554 4899999999
Q ss_pred CCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCcc
Q 040468 367 SHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEE 446 (543)
Q Consensus 367 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (543)
++|++++...+.+.
T Consensus 471 ~~n~l~~~~~~~~~------------------------------------------------------------------ 484 (592)
T 3ogk_B 471 GYVGESDEGLMEFS------------------------------------------------------------------ 484 (592)
T ss_dssp CSCCSSHHHHHHHH------------------------------------------------------------------
T ss_pred cCCCCCHHHHHHHH------------------------------------------------------------------
Confidence 99987642111110
Q ss_pred ceeeeccCCcccccccccCceeEEEcccCcccccc-ChhhhcccccCeeeCcCCccccccChhh-hccCCCCeeeCCC
Q 040468 447 TIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEI-PTQIGYLTKIHALNLSHNNLTGTIPTTF-SNLKQIESLDLSY 522 (543)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~-~~~l~~l~~L~~L~ls~n~i~~~~~~~~-~~l~~L~~L~l~~ 522 (543)
..+++|++|++++|.+++.. +.....+++|++|+|++|++++.....+ ..++.++...+..
T Consensus 485 ---------------~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 485 ---------------RGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp ---------------TCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred ---------------hcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 01579999999999987553 3445789999999999999987655444 3566665555544
No 51
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=1.4e-30 Score=275.30 Aligned_cols=299 Identities=17% Similarity=0.151 Sum_probs=134.4
Q ss_pred hcCCCCcEEEccCCcccccCCCCCc-CCCCCCEEEcCCC-ccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhc----
Q 040468 67 ENNTNLETLLLANNSLFGSFRMPIH-SHQKLATLDVSNN-FFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFA---- 140 (543)
Q Consensus 67 ~~l~~L~~L~L~~~~~~~~~~~~~~-~~~~L~~L~ls~~-~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~---- 140 (543)
..+++|++|+++++.+++..+..+. .+++|++|++++| .+.+.....+...+++|++|++++|.+++..+..+.
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 4455666666666655443333332 4556666666655 333222223332355666666666655433322222
Q ss_pred CCCCCCEEeccccc--ccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCc-------cCccCchh
Q 040468 141 DMQMLARLDISYNQ--LTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNN-------FSGEIPES 211 (543)
Q Consensus 141 ~l~~L~~L~L~~~~--~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~-------~~~~~~~~ 211 (543)
.+++|++|+++++. +.......+...+++|++|++++|......+..+..+++|+.|++..+. +. ..+..
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~ 260 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVA 260 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHH
Confidence 34456666666554 1111111222235566666666552111233334445566666544332 11 11223
Q ss_pred hhcCCCCCEE-EccCCcCCCcccccccCCCCCcEEEccCCcccccC-cccccCCCCCcEEEccCCcCccC-CCCCC-Ccc
Q 040468 212 LSKCRRLGGL-YLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLI-PIEFCQLRFLRILDLSNNTIFGT-LPSCF-SPA 287 (543)
Q Consensus 212 l~~~~~L~~L-~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~-~~~~~-~~~ 287 (543)
+.++++|+.+ .+.+... ...+..+..+++|+.|++++|.+.+.. ...+..+++|+.|++++| +.+. ..... .++
T Consensus 261 l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK 338 (594)
T ss_dssp HHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred HhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence 4555555555 2222111 122333334555666666655543221 112345556666666555 2211 01111 145
Q ss_pred cccEEEcCC---------CccccccCCCC-CCCCCccEEEccccccccccCccCC-CCCCCCEEEcc--C----ccccc-
Q 040468 288 YIEQVHLSK---------NKIEGRLESVI-PDSPNLVTLDLSYNCLHGSIPNRID-RLPQLSYLLLA--N----NYIEG- 349 (543)
Q Consensus 288 ~L~~L~l~~---------~~~~~~~~~~~-~~~~~L~~L~l~~~~i~~~~~~~l~-~~~~L~~L~l~--~----n~i~~- 349 (543)
+|++|++.+ +.+++.....+ ..+++|++|.+..+.+++..+..+. .+++|+.|++. + +.+++
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~ 418 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence 556665522 22222111111 2356666666666666544333333 35666666666 2 34431
Q ss_pred ----ccchhhhCCCCCCEEeCCC
Q 040468 350 ----EIPVQLCQLKEVQLIDLSH 368 (543)
Q Consensus 350 ----~~~~~l~~l~~L~~L~l~~ 368 (543)
.++..+..+++|+.|++++
T Consensus 419 ~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 419 PLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp CTHHHHHHHHHHCTTCCEEECCS
T ss_pred chhhHHHHHHhhCCCccEEeecC
Confidence 1122245566677776655
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=4.4e-27 Score=231.39 Aligned_cols=279 Identities=18% Similarity=0.156 Sum_probs=174.6
Q ss_pred CCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEc
Q 040468 144 MLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYL 223 (543)
Q Consensus 144 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 223 (543)
.....+.+++.++ .+|..+ .++|++|++++|.+.......+..+++|++|++++|.+.+..+..+..+++|
T Consensus 32 ~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L----- 102 (353)
T 2z80_A 32 RNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL----- 102 (353)
T ss_dssp TTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC-----
T ss_pred CCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCC-----
Confidence 3334555555555 555433 2355555555555554444445555555555555555544434444444444
Q ss_pred cCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCC-C-CCCcccccEEEcCCC-ccc
Q 040468 224 SDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLP-S-CFSPAYIEQVHLSKN-KIE 300 (543)
Q Consensus 224 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~-~~~~~~L~~L~l~~~-~~~ 300 (543)
++|++++|.+.+..+..+..+++|++|++++|.+.+... . +..+++|+.|++++| .+.
T Consensus 103 -------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~ 163 (353)
T 2z80_A 103 -------------------EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT 163 (353)
T ss_dssp -------------------CEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC
T ss_pred -------------------CEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc
Confidence 445554444444333334445555555555555543333 1 222556666666665 345
Q ss_pred cccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcc
Q 040468 301 GRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLV 380 (543)
Q Consensus 301 ~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 380 (543)
+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|+++...+..+..+++|++|++++|.+.+..+..+.
T Consensus 164 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 243 (353)
T 2z80_A 164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS 243 (353)
T ss_dssp EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---
T ss_pred ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc
Confidence 45556677888999999999998877788899999999999999998744334455689999999999988643222211
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCccccc
Q 040468 381 NTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQ 460 (543)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (543)
...
T Consensus 244 ~~~----------------------------------------------------------------------------- 246 (353)
T 2z80_A 244 TGE----------------------------------------------------------------------------- 246 (353)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 100
Q ss_pred ccccCceeEEEcccCcccc----ccChhhhcccccCeeeCcCCccccccChh-hhccCCCCeeeCCCCcCcccCC
Q 040468 461 GRILTSMFGIDLSCNKLTG----EIPTQIGYLTKIHALNLSHNNLTGTIPTT-FSNLKQIESLDLSYNLLHGKIP 530 (543)
Q Consensus 461 ~~~~~~L~~L~ls~n~l~~----~~~~~l~~l~~L~~L~ls~n~i~~~~~~~-~~~l~~L~~L~l~~n~i~~~~~ 530 (543)
..+.++.++++++.+.+ .+|..+..+++|++|+|++|.++ .+|.. |..+++|+.|++++|++.+..|
T Consensus 247 --~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 247 --TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp --CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred --ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 02345555566555553 46788899999999999999999 55555 5899999999999999987654
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=3.1e-26 Score=220.71 Aligned_cols=281 Identities=18% Similarity=0.191 Sum_probs=220.3
Q ss_pred CEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCc--ccccccCCCCCcEEEcc
Q 040468 171 EILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGE--IPRWLGNLSFLVDIIMP 248 (543)
Q Consensus 171 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~ 248 (543)
+.++.+++.++... ..+ .+++++|++++|.+....+..+..+++|++|++++|.+... .+..+..+++|+.|+++
T Consensus 10 ~~l~c~~~~l~~ip-~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVP-TGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCC-SCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCC-CCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 46777877776433 322 36899999999998855555678999999999999988733 24566778999999999
Q ss_pred CCcccccCcccccCCCCCcEEEccCCcCccCCC--CCCCcccccEEEcCCCccccccCCCCCCCCCccEEEcccccccc-
Q 040468 249 NNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLP--SCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHG- 325 (543)
Q Consensus 249 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~- 325 (543)
+|.+... +..+..+++|+.|++++|.+.+... .+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 87 ~n~i~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEEEE-EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccccC-hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 9988854 5568889999999999998886654 34447899999999999988777888889999999999999886
Q ss_pred ccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCc
Q 040468 326 SIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGY 405 (543)
Q Consensus 326 ~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~ 405 (543)
..|..+..+++|+.|++++|++++..+..+..+++|++|++++|.+.+..+..+..
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------------------------ 221 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC------------------------ 221 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTT------------------------
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccC------------------------
Confidence 57888899999999999999998777888889999999999999886432222211
Q ss_pred cccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhh
Q 040468 406 ASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQI 485 (543)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l 485 (543)
+++|++|++++|++++..|..+
T Consensus 222 ----------------------------------------------------------l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 222 ----------------------------------------------------------LNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp ----------------------------------------------------------CTTCCEEECTTSCCCBCSSSSC
T ss_pred ----------------------------------------------------------cccCCEeECCCCCCcccCHHHH
Confidence 5789999999999997778888
Q ss_pred hccc-ccCeeeCcCCccccccC--hhhhccCCCCeeeCCCCcCcccCCccccccC
Q 040468 486 GYLT-KIHALNLSHNNLTGTIP--TTFSNLKQIESLDLSYNLLHGKIPSQLTVLT 537 (543)
Q Consensus 486 ~~l~-~L~~L~ls~n~i~~~~~--~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~ 537 (543)
..++ +|++|+|++|++++..+ ....-+.+.+.+.+..+.+.+..|+.+...+
T Consensus 244 ~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~ 298 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP 298 (306)
T ss_dssp CCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCB
T ss_pred HhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCce
Confidence 8884 89999999999886432 1123344566677788888888888776654
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=1.8e-25 Score=215.33 Aligned_cols=262 Identities=22% Similarity=0.200 Sum_probs=168.6
Q ss_pred CCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCcc--CchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEE
Q 040468 169 SLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGE--IPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDII 246 (543)
Q Consensus 169 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 246 (543)
++++|++++|.+.......+..+++|++|++++|.+... .+..+..+++|++|++++|.+. ..+..+..+++|+.|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEE
Confidence 344444444444433323334444444444444444321 1333444556666666666554 3344456666666666
Q ss_pred ccCCcccccCc-ccccCCCCCcEEEccCCcCccCCCCCCC-cccccEEEcCCCcccc-ccCCCCCCCCCccEEEcccccc
Q 040468 247 MPNNNLEGLIP-IEFCQLRFLRILDLSNNTIFGTLPSCFS-PAYIEQVHLSKNKIEG-RLESVIPDSPNLVTLDLSYNCL 323 (543)
Q Consensus 247 l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i 323 (543)
+++|.+.+..+ ..+..+++|+.|++++|.+.+..+..+. +++|+.|++++|.+.+ ..+..+..+++|++|++++|.+
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence 66666655433 3566667777777777766655544443 6777777777777765 4566777888888888888888
Q ss_pred ccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q 040468 324 HGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRAS 403 (543)
Q Consensus 324 ~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 403 (543)
++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|++.+..|..+..+
T Consensus 188 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~--------------------- 246 (306)
T 2z66_A 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF--------------------- 246 (306)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC---------------------
T ss_pred CCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh---------------------
Confidence 87767888888889999999888886666677888889999999988876555443321
Q ss_pred CccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccC-
Q 040468 404 GYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIP- 482 (543)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~- 482 (543)
+++|++|++++|.+++..+
T Consensus 247 ------------------------------------------------------------~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 247 ------------------------------------------------------------PSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp ------------------------------------------------------------CTTCCEEECTTCCEECSGGG
T ss_pred ------------------------------------------------------------hccCCEEEccCCCeecccCh
Confidence 2478889999988875432
Q ss_pred -hhhhcccccCeeeCcCCccccccChhhhcc
Q 040468 483 -TQIGYLTKIHALNLSHNNLTGTIPTTFSNL 512 (543)
Q Consensus 483 -~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l 512 (543)
.....+...+.+.+..+.+....|..+.+.
T Consensus 267 ~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~ 297 (306)
T 2z66_A 267 QSFLQWIKDQRQLLVEVERMECATPSDKQGM 297 (306)
T ss_dssp HHHHHHHHHTGGGBSCGGGCBEEESGGGTTC
T ss_pred HHHHHHHHhhhhhhccccccccCCchhhCCc
Confidence 223445566777777788887778776553
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2.5e-25 Score=211.98 Aligned_cols=223 Identities=22% Similarity=0.183 Sum_probs=153.8
Q ss_pred CEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccC
Q 040468 146 ARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSD 225 (543)
Q Consensus 146 ~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 225 (543)
+.++.+++.+. .+|.++ .+++++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 44555555554 444332 34566666666666555555566666666666666666655556666667777777777
Q ss_pred Cc-CCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCC-CcccccEEEcCCCcccccc
Q 040468 226 NH-LSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCF-SPAYIEQVHLSKNKIEGRL 303 (543)
Q Consensus 226 ~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~ 303 (543)
|. +....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+ .+++|+.|++++|.+++..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 65 554445666677777777777777776666667777777777777777765554433 3677777777777777666
Q ss_pred CCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468 304 ESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372 (543)
Q Consensus 304 ~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 372 (543)
...+..+++|++|++++|.+++..+.++..+++|+.|++++|++++..+..+..+++|++|++++|++.
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 666777888888888888888766778888888888888888888665666778888888888888875
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=8.3e-26 Score=222.26 Aligned_cols=282 Identities=17% Similarity=0.123 Sum_probs=144.9
Q ss_pred cCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCC
Q 040468 42 YHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGL 121 (543)
Q Consensus 42 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L 121 (543)
..|+.....+.+++.++ .+|..+ .++|++|++++|++.+..+..+..+++|++|++++|.++ .++...+..+++|
T Consensus 28 ~~C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L 102 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSL 102 (353)
T ss_dssp CEECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTC
T ss_pred CCCCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCC
Confidence 34555556666766665 566543 346777777777766555556666777777777776666 3332222236666
Q ss_pred cEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCch-HhhhCCCCCCEEEccCCc-CCCcCcccccCCCCcCEEeC
Q 040468 122 MEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPE-RMATGCFSLEILALSNNS-LQGHIFSKKFSLTNLMTLQL 199 (543)
Q Consensus 122 ~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l 199 (543)
++|++++|.+++..+..+.++++|++|++++|.+. .++. ..+..+++|++|++++|. +....+..+
T Consensus 103 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~----------- 170 (353)
T 2z80_A 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF----------- 170 (353)
T ss_dssp CEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT-----------
T ss_pred CEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHc-----------
Confidence 66666666666433334566666666666666655 4443 333445555555555542 333333333
Q ss_pred CCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccC
Q 040468 200 DGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGT 279 (543)
Q Consensus 200 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 279 (543)
..+++|++|++++|.+....+..+..+++|++|++++|.+.......+..+++|+.|++++|.+.+.
T Consensus 171 -------------~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 237 (353)
T 2z80_A 171 -------------AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF 237 (353)
T ss_dssp -------------TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTC
T ss_pred -------------cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccc
Confidence 4444444444444444433344444444444455544444332222223344555555555544432
Q ss_pred CCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEcccccccc----ccCccCCCCCCCCEEEccCcccccccchh-
Q 040468 280 LPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHG----SIPNRIDRLPQLSYLLLANNYIEGEIPVQ- 354 (543)
Q Consensus 280 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~----~~~~~l~~~~~L~~L~l~~n~i~~~~~~~- 354 (543)
....+. .......++.++++++.+.+ .+|.++..+++|+.|++++|+++ .+|..
T Consensus 238 ~~~~l~--------------------~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~ 296 (353)
T 2z80_A 238 HFSELS--------------------TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGI 296 (353)
T ss_dssp CCC--------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTT
T ss_pred cccccc--------------------cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHH
Confidence 211100 00112334444444444432 34455666666666666666666 33333
Q ss_pred hhCCCCCCEEeCCCCccccc
Q 040468 355 LCQLKEVQLIDLSHNNLSGH 374 (543)
Q Consensus 355 l~~l~~L~~L~l~~n~~~~~ 374 (543)
|..+++|++|++++|++.+.
T Consensus 297 ~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 297 FDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp TTTCTTCCEEECCSSCBCCC
T ss_pred HhcCCCCCEEEeeCCCccCc
Confidence 45666677777777766543
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=8.6e-27 Score=225.48 Aligned_cols=189 Identities=25% Similarity=0.199 Sum_probs=101.9
Q ss_pred EEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcc
Q 040468 173 LALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNL 252 (543)
Q Consensus 173 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 252 (543)
.+++.+.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.+....+ +..+++|+.|++++|.+
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV 92 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEE
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcc
Confidence 3444444433333333445566666666666665555566666666666666666653322 56666666666666665
Q ss_pred cccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccC-
Q 040468 253 EGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRI- 331 (543)
Q Consensus 253 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l- 331 (543)
.+.. ..++|+.|++++|.+.+..... +++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+
T Consensus 93 ~~l~-----~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 165 (317)
T 3o53_A 93 QELL-----VGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165 (317)
T ss_dssp EEEE-----ECTTCCEEECCSSCCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred cccc-----CCCCcCEEECCCCccCCcCccc--cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh
Confidence 5332 2255666666666555433322 3455666666665555544455555556666666665554444433
Q ss_pred CCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468 332 DRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372 (543)
Q Consensus 332 ~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 372 (543)
..+++|+.|++++|++++. +. ...+++|++|++++|.+.
T Consensus 166 ~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~ 204 (317)
T 3o53_A 166 ASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA 204 (317)
T ss_dssp GGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC
T ss_pred hccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCC
Confidence 2455566666666655532 22 223555556666655554
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=7.1e-25 Score=222.22 Aligned_cols=226 Identities=24% Similarity=0.249 Sum_probs=118.6
Q ss_pred CCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCC-CcccccEEEcC
Q 040468 217 RLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCF-SPAYIEQVHLS 295 (543)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~ 295 (543)
+++.|++++|.+....+..|..+++|+.|++++|.+....+..|..+++|+.|++++|.+....+..+ .+++|+.|+++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 44445555554443334444455555555555555544444445555555555555555544333222 24555555555
Q ss_pred CCccccccCCCCCCCCCccEEEcccc-ccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccccc
Q 040468 296 KNKIEGRLESVIPDSPNLVTLDLSYN-CLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGH 374 (543)
Q Consensus 296 ~~~~~~~~~~~~~~~~~L~~L~l~~~-~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~ 374 (543)
+|.++......|..+++|++|++++| .+....+..+..+++|+.|++++|+++ .+|. +..+++|++|++++|.+.+.
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTTCSSCCEEECTTSCCCEE
T ss_pred CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCCCcccCEEECCCCccCcc
Confidence 55555444445555556666666553 333223334555566666666666555 3332 45556666666666655543
Q ss_pred CCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccC
Q 040468 375 IPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKN 454 (543)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (543)
.|..+..
T Consensus 223 ~~~~~~~------------------------------------------------------------------------- 229 (440)
T 3zyj_A 223 RPGSFQG------------------------------------------------------------------------- 229 (440)
T ss_dssp CTTTTTT-------------------------------------------------------------------------
T ss_pred Chhhhcc-------------------------------------------------------------------------
Confidence 3333222
Q ss_pred CcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCc
Q 040468 455 MSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 526 (543)
Q Consensus 455 ~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~ 526 (543)
+++|++|++++|+++...+..|..+++|++|+|++|.+++..+..|..+++|+.|++++|++.
T Consensus 230 ---------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 230 ---------LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ---------CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ---------CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 345666666666666444555666666666666666666555555566666666666666654
No 59
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=1.8e-25 Score=216.93 Aligned_cols=236 Identities=18% Similarity=0.243 Sum_probs=196.4
Q ss_pred CCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEE
Q 040468 191 LTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILD 270 (543)
Q Consensus 191 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 270 (543)
.+.++.|+++++.+. .+|..+..+++|++|++++|.+. ..|..++.+++|+.|++++|.+. .+|..+..+++|+.|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 477888888888887 66777778888999999888888 67777888888889998888888 5577788888888888
Q ss_pred ccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccc
Q 040468 271 LSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGE 350 (543)
Q Consensus 271 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~ 350 (543)
+++|.+.+..+..+. ... ....+..+++|++|++++|.++ .+|..+..+++|+.|++++|+++ .
T Consensus 157 L~~n~~~~~~p~~~~-----~~~---------~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~ 220 (328)
T 4fcg_A 157 IRACPELTELPEPLA-----STD---------ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-A 220 (328)
T ss_dssp EEEETTCCCCCSCSE-----EEC----------CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-C
T ss_pred CCCCCCccccChhHh-----hcc---------chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-c
Confidence 888766655444321 111 1223556899999999999999 78888999999999999999998 5
Q ss_pred cchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcc
Q 040468 351 IPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPY 430 (543)
Q Consensus 351 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (543)
+|..+..+++|++|++++|++.+.+|..+..
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~------------------------------------------------- 251 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGG------------------------------------------------- 251 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTTCCBCCCCTTC-------------------------------------------------
T ss_pred CchhhccCCCCCEEECcCCcchhhhHHHhcC-------------------------------------------------
Confidence 6667899999999999999998777765443
Q ss_pred cccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhh
Q 040468 431 ALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFS 510 (543)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~ 510 (543)
+++|++|++++|.+.+.+|..+..+++|++|+|++|.+.+.+|+++.
T Consensus 252 ---------------------------------l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 252 ---------------------------------RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp ---------------------------------CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred ---------------------------------CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 56899999999998889999999999999999999999999999999
Q ss_pred ccCCCCeeeCCCCcCcc
Q 040468 511 NLKQIESLDLSYNLLHG 527 (543)
Q Consensus 511 ~l~~L~~L~l~~n~i~~ 527 (543)
.+++|+.+++..+.+..
T Consensus 299 ~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 299 QLPANCIILVPPHLQAQ 315 (328)
T ss_dssp GSCTTCEEECCGGGSCC
T ss_pred hccCceEEeCCHHHHHH
Confidence 99999999999887763
No 60
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=2.5e-28 Score=257.99 Aligned_cols=418 Identities=13% Similarity=0.095 Sum_probs=284.8
Q ss_pred CceeEEEeeCCCCCCCc---------------chhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCC-cccc
Q 040468 21 FQLTSISLSGYIDGGTF---------------PKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANN-SLFG 84 (543)
Q Consensus 21 ~~L~~L~L~~~~~~~~~---------------~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~-~~~~ 84 (543)
.+|++|+++++.....+ +.....+++|++|+++++.+++..+..+...+++|++|++++| .+.+
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 145 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST 145 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence 37999999998633211 1223578999999999999887777666557999999999999 4433
Q ss_pred c-CCCCCcCCCCCCEEEcCCCccccCCchhh---hcCCCCCcEEEcCCCc--Ccc-CCchhhcCCCCCCEEecccccccc
Q 040468 85 S-FRMPIHSHQKLATLDVSNNFFQGHIPVEI---GTYLPGLMEFNLSRNA--FNG-SIPSSFADMQMLARLDISYNQLTG 157 (543)
Q Consensus 85 ~-~~~~~~~~~~L~~L~ls~~~i~~~~~~~~---~~~l~~L~~L~L~~~~--i~~-~~~~~l~~l~~L~~L~L~~~~~~~ 157 (543)
. .+..+..+++|++|++++|.+++..+..+ ...+++|++|++++|. +.. .+...+.++++|++|++++|....
T Consensus 146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~ 225 (594)
T 2p1m_B 146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE 225 (594)
T ss_dssp HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH
T ss_pred HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH
Confidence 2 33334579999999999999875444333 2347799999999986 321 122233557999999999984332
Q ss_pred cCchHhhhCCCCCCEEEccCCcC-------CCcCcccccCCCCcCEE-eCCCCccCccCchhhhcCCCCCEEEccCCcCC
Q 040468 158 EIPERMATGCFSLEILALSNNSL-------QGHIFSKKFSLTNLMTL-QLDGNNFSGEIPESLSKCRRLGGLYLSDNHLS 229 (543)
Q Consensus 158 ~~~~~~~~~~~~L~~L~l~~n~~-------~~~~~~~l~~l~~L~~L-~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 229 (543)
.++ ..+..+++|++|+++.+.. .+ ....+..+++|+.+ .+.+... ..++..+..+++|++|++++|.+.
T Consensus 226 ~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~ 302 (594)
T 2p1m_B 226 KLA-TLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQ 302 (594)
T ss_dssp HHH-HHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCC
T ss_pred HHH-HHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCC
Confidence 444 3445599999999776532 21 23356788999998 3433322 234455567899999999999865
Q ss_pred Ccc-cccccCCCCCcEEEccCCccccc-CcccccCCCCCcEEEccCC---------cCccCCCC-CC-CcccccEEEcCC
Q 040468 230 GEI-PRWLGNLSFLVDIIMPNNNLEGL-IPIEFCQLRFLRILDLSNN---------TIFGTLPS-CF-SPAYIEQVHLSK 296 (543)
Q Consensus 230 ~~~-~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~---------~~~~~~~~-~~-~~~~L~~L~l~~ 296 (543)
... ...+..+++|+.|++.+| +.+. .+.....+++|+.|++.++ .+++.... .. .+++|+.|.+..
T Consensus 303 ~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~ 381 (594)
T 2p1m_B 303 SYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC 381 (594)
T ss_dssp HHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred HHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc
Confidence 332 233568999999999988 4322 2222335789999999542 22221111 11 268899998888
Q ss_pred CccccccCCCCC-CCCCccEEEcc--c----cccccc-----cCccCCCCCCCCEEEccCcccccccchhhhC-CCCCCE
Q 040468 297 NKIEGRLESVIP-DSPNLVTLDLS--Y----NCLHGS-----IPNRIDRLPQLSYLLLANNYIEGEIPVQLCQ-LKEVQL 363 (543)
Q Consensus 297 ~~~~~~~~~~~~-~~~~L~~L~l~--~----~~i~~~-----~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~-l~~L~~ 363 (543)
+.+++.....+. .+++|++|+++ + +.+++. ++..+..+++|+.|++++ .+++.....+.. +++|+.
T Consensus 382 ~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~ 460 (594)
T 2p1m_B 382 RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEM 460 (594)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCE
T ss_pred CCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccE
Confidence 888765433333 57899999999 3 455521 122356789999999988 777665666665 899999
Q ss_pred EeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCC
Q 040468 364 IDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMG 443 (543)
Q Consensus 364 L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (543)
|++++|.+++..+..+.
T Consensus 461 L~L~~~~i~~~~~~~l~--------------------------------------------------------------- 477 (594)
T 2p1m_B 461 LSVAFAGDSDLGMHHVL--------------------------------------------------------------- 477 (594)
T ss_dssp EEEESCCSSHHHHHHHH---------------------------------------------------------------
T ss_pred eeccCCCCcHHHHHHHH---------------------------------------------------------------
Confidence 99999987543221110
Q ss_pred CccceeeeccCCcccccccccCceeEEEcccCccccccCh-hhhcccccCeeeCcCCccccccChhh-hccCCCCeeeCC
Q 040468 444 KEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPT-QIGYLTKIHALNLSHNNLTGTIPTTF-SNLKQIESLDLS 521 (543)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~l~~l~~L~~L~ls~n~i~~~~~~~~-~~l~~L~~L~l~ 521 (543)
..+++|++|++++|.+++..+. ....+++|++|+|++|+++....+.+ ..+++|+...+.
T Consensus 478 ------------------~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~ 539 (594)
T 2p1m_B 478 ------------------SGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVID 539 (594)
T ss_dssp ------------------HHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEEC
T ss_pred ------------------hcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEec
Confidence 0167899999999999754443 45668999999999999976555555 567888766666
Q ss_pred CCc
Q 040468 522 YNL 524 (543)
Q Consensus 522 ~n~ 524 (543)
.+.
T Consensus 540 ~~~ 542 (594)
T 2p1m_B 540 ERG 542 (594)
T ss_dssp SSS
T ss_pred CCC
Confidence 554
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=2.2e-24 Score=219.38 Aligned_cols=246 Identities=23% Similarity=0.196 Sum_probs=157.2
Q ss_pred CCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEc
Q 040468 47 LKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNL 126 (543)
Q Consensus 47 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L 126 (543)
.+.++.++..++ .+|..+ .+++++|++++|++.+..+..|.++++|++|++++|.+. .++...+..+++|++|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEEC
Confidence 455666665555 455533 356667777777666666666667777777777776666 333333333667777777
Q ss_pred CCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCC-cCCCcCcccccCCCCcCEEeCCCCccC
Q 040468 127 SRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNN-SLQGHIFSKKFSLTNLMTLQLDGNNFS 205 (543)
Q Consensus 127 ~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~l~~l~~L~~L~l~~~~~~ 205 (543)
++|.++...+..+.++++|++|++++|.+. .++...+..+++|++|++++| .+.......+..+++|++|++++|.+.
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence 777666554555666677777777777666 555555556667777777663 333333345566677777777777666
Q ss_pred ccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCC
Q 040468 206 GEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFS 285 (543)
Q Consensus 206 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 285 (543)
.. + .+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.......+.
T Consensus 210 ~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 287 (452)
T 3zyi_A 210 DM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287 (452)
T ss_dssp SC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSST
T ss_pred cc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhc
Confidence 32 3 355666777777777777666666677777777777777777766666677777777777777777655555443
Q ss_pred -cccccEEEcCCCccc
Q 040468 286 -PAYIEQVHLSKNKIE 300 (543)
Q Consensus 286 -~~~L~~L~l~~~~~~ 300 (543)
+++|+.|++++|.+.
T Consensus 288 ~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 288 PLRYLVELHLHHNPWN 303 (452)
T ss_dssp TCTTCCEEECCSSCEE
T ss_pred cccCCCEEEccCCCcC
Confidence 667777777777654
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=2.1e-25 Score=216.32 Aligned_cols=224 Identities=19% Similarity=0.230 Sum_probs=129.6
Q ss_pred CCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEE
Q 040468 45 HDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEF 124 (543)
Q Consensus 45 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L 124 (543)
+++++|+++++.+. .+|..+ .++++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+.. +++|++|
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l-~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~-l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQA-FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIAS-LNRLREL 155 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCG-GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGG-CTTCCEE
T ss_pred cceeEEEccCCCch-hcChhh-hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhc-CcCCCEE
Confidence 44555555555544 444433 33555555555555543 44444555555555555555554 44444444 4555555
Q ss_pred EcCCCcCccCCchhhc---------CCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcC
Q 040468 125 NLSRNAFNGSIPSSFA---------DMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLM 195 (543)
Q Consensus 125 ~L~~~~i~~~~~~~l~---------~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 195 (543)
++++|.+.+.+|..+. ++++|++|++++|.+. .+|..+. .+++|++|++++|.+.+ .+..+..+++|+
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~ 232 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLSA-LGPAIHHLPKLE 232 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGG-GCTTCCEEEEESSCCCC-CCGGGGGCTTCC
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhc-CCCCCCEEEccCCCCCc-CchhhccCCCCC
Confidence 5555444444444333 3666666666666666 5555433 36666666666666663 333456666666
Q ss_pred EEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCc
Q 040468 196 TLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNT 275 (543)
Q Consensus 196 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 275 (543)
+|++++|.+.+..|..+..+++|++|++++|.+....|..+..+++|+.|++++|.+.+.+|..+..+++|+.+++..+.
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 66666666665666666666667777776666666666666667777777777766666666677777777777666554
Q ss_pred C
Q 040468 276 I 276 (543)
Q Consensus 276 ~ 276 (543)
+
T Consensus 313 ~ 313 (328)
T 4fcg_A 313 Q 313 (328)
T ss_dssp S
T ss_pred H
Confidence 3
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=1.1e-24 Score=207.43 Aligned_cols=163 Identities=20% Similarity=0.219 Sum_probs=89.4
Q ss_pred CCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCc-CccCCCCCC-CcccccEEE
Q 040468 216 RRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNT-IFGTLPSCF-SPAYIEQVH 293 (543)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~-~~~~L~~L~ 293 (543)
+++++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|. +....+..+ .+++|+.|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 344455555544443333444455555555555555544444445555555555555554 433322222 245555555
Q ss_pred cCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccc
Q 040468 294 LSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSG 373 (543)
Q Consensus 294 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~ 373 (543)
+++|.+++..+..+..+++|++|++++|+++...+..+..+++|+.|++++|++++..+..+..+++|++|++++|.+.+
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 55555555555556666666666666666664444556666666666666666664444456666666666666666654
Q ss_pred cCCCC
Q 040468 374 HIPPC 378 (543)
Q Consensus 374 ~~~~~ 378 (543)
..|..
T Consensus 192 ~~~~~ 196 (285)
T 1ozn_A 192 VHPHA 196 (285)
T ss_dssp ECTTT
T ss_pred cCHhH
Confidence 43433
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=3.2e-24 Score=217.39 Aligned_cols=249 Identities=20% Similarity=0.175 Sum_probs=169.4
Q ss_pred CCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEE
Q 040468 95 KLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILA 174 (543)
Q Consensus 95 ~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~ 174 (543)
..+.++.++..++ .+|..+. ++++.|++++|.+....+..|.++++|++|++++|.+. .++...+..+++|++|+
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLE 118 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEE
T ss_pred CCCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEE
Confidence 4567888888887 7887664 58889999999988777788888889999999988887 56656666688888888
Q ss_pred ccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccc
Q 040468 175 LSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEG 254 (543)
Q Consensus 175 l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 254 (543)
+++|.+.......+..+++|++|++++|.+....+..+..+++|++|+++++.....
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~----------------------- 175 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY----------------------- 175 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE-----------------------
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcce-----------------------
Confidence 888887766666677777777777777777655555566666666666665332211
Q ss_pred cCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCC
Q 040468 255 LIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRL 334 (543)
Q Consensus 255 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~ 334 (543)
..+..+..+++|+.|++++|.+.. .+.+..+++|+.|++++|.+++..+..|..+++|++|++++|++++..+..+..+
T Consensus 176 i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 254 (440)
T 3zyj_A 176 ISEGAFEGLSNLRYLNLAMCNLRE-IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254 (440)
T ss_dssp ECTTTTTTCSSCCEEECTTSCCSS-CCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC
T ss_pred eCcchhhcccccCeecCCCCcCcc-ccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCC
Confidence 222234444444555555444442 2233345566666666666666666666677777777777777776666667777
Q ss_pred CCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468 335 PQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372 (543)
Q Consensus 335 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 372 (543)
++|+.|++++|++++..+..|..+++|+.|++++|++.
T Consensus 255 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 77777777777777555556667777777777777764
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=3.8e-24 Score=223.20 Aligned_cols=270 Identities=22% Similarity=0.290 Sum_probs=206.6
Q ss_pred CCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEe
Q 040468 119 PGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQ 198 (543)
Q Consensus 119 ~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 198 (543)
.+++.|+++++.++ .+|..+. ++|++|++++|.+. .+|. .+++|++|++++|.++.... .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEE
Confidence 36899999999988 6676654 78999999999988 6765 47899999999999875332 678999999
Q ss_pred CCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCcc
Q 040468 199 LDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFG 278 (543)
Q Consensus 199 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 278 (543)
+++|.+.. ++. .+++|+.|++++|.+.. +|. .+++|+.|++++|.+.+. |. .+++|+.|++++|.+..
T Consensus 108 Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 108 IFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp ECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC
T ss_pred CcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC
Confidence 99998874 343 56789999999998874 443 247889999999888754 32 34678888999888876
Q ss_pred CCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCC
Q 040468 279 TLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQL 358 (543)
Q Consensus 279 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l 358 (543)
.. ..+++|+.|++++|.+++... ..++|+.|++++|.++ .+|. .+++|+.|++++|++++ +| ..+
T Consensus 176 l~---~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l 240 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLP 240 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCC
T ss_pred Cc---ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCC
Confidence 43 236788888888888875432 2368888888888888 4443 24778888888888874 45 456
Q ss_pred CCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCC
Q 040468 359 KEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSR 438 (543)
Q Consensus 359 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (543)
++|++|++++|.+. .+|. .
T Consensus 241 ~~L~~L~Ls~N~L~-~lp~-----~------------------------------------------------------- 259 (622)
T 3g06_A 241 SELKELMVSGNRLT-SLPM-----L------------------------------------------------------- 259 (622)
T ss_dssp TTCCEEECCSSCCS-CCCC-----C-------------------------------------------------------
T ss_pred CcCcEEECCCCCCC-cCCc-----c-------------------------------------------------------
Confidence 78888888888775 2332 0
Q ss_pred CCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhccCC
Q 040468 439 TPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQ 514 (543)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~ 514 (543)
+++|+.|+|++|+++ .+|..+..+++|+.|+|++|++++..|..+..+++
T Consensus 260 -------------------------~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~ 309 (622)
T 3g06_A 260 -------------------------PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITS 309 (622)
T ss_dssp -------------------------CTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHH
T ss_pred -------------------------cccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhccc
Confidence 567888889988888 77888888888999999998888888877766653
No 66
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=4.6e-24 Score=217.03 Aligned_cols=249 Identities=20% Similarity=0.145 Sum_probs=166.4
Q ss_pred CCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEE
Q 040468 95 KLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILA 174 (543)
Q Consensus 95 ~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~ 174 (543)
..+.++.++..++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+. .++...+..+++|++|+
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~ 129 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLE 129 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred CCcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEE
Confidence 3567888887777 7776654 58888888888888777778888888888888888887 55555555677788888
Q ss_pred ccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccc
Q 040468 175 LSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEG 254 (543)
Q Consensus 175 l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 254 (543)
+++|.+.......+..+++|++|++++|.+....+..+..+++|++|+++++... ..
T Consensus 130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l-----------------------~~ 186 (452)
T 3zyi_A 130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKL-----------------------EY 186 (452)
T ss_dssp CCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTC-----------------------CE
T ss_pred CCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCc-----------------------cc
Confidence 8887777665555666777777777777666444445556666666666553222 21
Q ss_pred cCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCC
Q 040468 255 LIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRL 334 (543)
Q Consensus 255 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~ 334 (543)
..+..+..+++|+.|++++|.+.+. +.+..+++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+
T Consensus 187 i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 265 (452)
T 3zyi_A 187 ISEGAFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265 (452)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred cChhhccCCCCCCEEECCCCccccc-ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC
Confidence 2222344445555555555554432 333345666666666666666666666777777777777777776666677777
Q ss_pred CCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468 335 PQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372 (543)
Q Consensus 335 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 372 (543)
++|+.|++++|++++..+..+..+++|+.|++++|++.
T Consensus 266 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 77777777777777555556667777777777777764
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=6.9e-26 Score=219.12 Aligned_cols=245 Identities=20% Similarity=0.154 Sum_probs=154.0
Q ss_pred hhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCC
Q 040468 113 EIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLT 192 (543)
Q Consensus 113 ~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~ 192 (543)
.++..+++|++|++++|.+++..+..+.++++|++|++++|.+.+..+ +..+++|++|++++|.+.+.. ..+
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~l~-----~~~ 99 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL-----VGP 99 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSEEEEEE-----ECT
T ss_pred HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCCcccccc-----CCC
Confidence 333334445555555555544444445555555555555554442221 333455555555555443211 225
Q ss_pred CcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccc-cCCCCCcEEEc
Q 040468 193 NLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEF-CQLRFLRILDL 271 (543)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l 271 (543)
+|+.|++++|.+....+. .+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+ ..+++|+.|++
T Consensus 100 ~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 100 SIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (317)
T ss_dssp TCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEEC
Confidence 555555555555433222 24556666666666665555556666667777777776665544444 35677777777
Q ss_pred cCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccc-cc
Q 040468 272 SNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIE-GE 350 (543)
Q Consensus 272 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~-~~ 350 (543)
++|.+.+.. ....+++|+.|++++|.+++..+. +..+++|++|++++|+++ .+|..+..+++|+.|++++|++. +.
T Consensus 177 ~~N~l~~~~-~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~ 253 (317)
T 3o53_A 177 QYNFIYDVK-GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT 253 (317)
T ss_dssp TTSCCCEEE-CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHH
T ss_pred CCCcCcccc-cccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcC
Confidence 777776542 223367788888888888765443 677889999999999998 67788889999999999999998 66
Q ss_pred cchhhhCCCCCCEEeCCCCcc
Q 040468 351 IPVQLCQLKEVQLIDLSHNNL 371 (543)
Q Consensus 351 ~~~~l~~l~~L~~L~l~~n~~ 371 (543)
.+..+..+++|+.+++++++.
T Consensus 254 ~~~~~~~~~~L~~l~l~~~~~ 274 (317)
T 3o53_A 254 LRDFFSKNQRVQTVAKQTVKK 274 (317)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhccccceEEECCCchh
Confidence 778888899999999986643
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=2.1e-23 Score=217.62 Aligned_cols=241 Identities=24% Similarity=0.275 Sum_probs=178.3
Q ss_pred CCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEE
Q 040468 94 QKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEIL 173 (543)
Q Consensus 94 ~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L 173 (543)
.+++.|+++++.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.+. .+|. .+++|++|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEE
T ss_pred CCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEE
Confidence 35888888888888 7777664 68888888888887 4444 4678888888888887 6665 47888888
Q ss_pred EccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCccc
Q 040468 174 ALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLE 253 (543)
Q Consensus 174 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 253 (543)
++++|.+..... .+++|+.|++++|.++. +|. .+++|++|++++|.+.. .+. .+++|+.|++++|.+.
T Consensus 107 ~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 107 SIFSNPLTHLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT 174 (622)
T ss_dssp EECSCCCCCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred ECcCCcCCCCCC----CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC
Confidence 888888775432 46788888888888774 443 24788888888888773 332 3567888888888887
Q ss_pred ccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCC
Q 040468 254 GLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDR 333 (543)
Q Consensus 254 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~ 333 (543)
.. | ..+++|+.|++++|.+.+.... +++|+.|++++|.++.... .+++|++|++++|.+++ +| ..
T Consensus 175 ~l-~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~-lp---~~ 239 (622)
T 3g06_A 175 SL-P---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTS-LP---VL 239 (622)
T ss_dssp CC-C---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSC-CC---CC
T ss_pred CC-c---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCC----CCCCCCEEEccCCccCc-CC---CC
Confidence 64 3 3467888888888888753322 4788888888888875432 24788888888888884 44 45
Q ss_pred CCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCc
Q 040468 334 LPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCL 379 (543)
Q Consensus 334 ~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 379 (543)
+++|+.|++++|+++ .+|. .+++|+.|++++|.+. .+|+.+
T Consensus 240 l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l 280 (622)
T 3g06_A 240 PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESL 280 (622)
T ss_dssp CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGG
T ss_pred CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHH
Confidence 678888888888887 4554 5678888888888876 555444
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.9e-25 Score=227.04 Aligned_cols=147 Identities=24% Similarity=0.160 Sum_probs=73.1
Q ss_pred CCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCC
Q 040468 217 RLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSK 296 (543)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 296 (543)
+|+.|++++|.+....|..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ .++|+.|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEECcC
Confidence 44444444444444334444444444444444444443322 4444445555555544443221 14455555555
Q ss_pred CccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhh-CCCCCCEEeCCCCccc
Q 040468 297 NKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLC-QLKEVQLIDLSHNNLS 372 (543)
Q Consensus 297 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~-~l~~L~~L~l~~n~~~ 372 (543)
|.+++..+. .+++|++|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|++|++++|.+.
T Consensus 109 N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 109 NNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp SCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 555443332 234555666666655554455555555566666666655554454443 4556666666666554
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=9.1e-26 Score=217.74 Aligned_cols=246 Identities=22% Similarity=0.221 Sum_probs=172.9
Q ss_pred CCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCC-Cccccccc-------CCCCCcEEEccCCcccccCcccc--
Q 040468 191 LTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLS-GEIPRWLG-------NLSFLVDIIMPNNNLEGLIPIEF-- 260 (543)
Q Consensus 191 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~l-- 260 (543)
.++|+.+++.+|.+ ..|..+... ++.|++++|.+. ...+..+. .+++|++|++++|.+.+..|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 34455555555554 333333322 555555555542 12222222 46667777777777665555554
Q ss_pred cCCCCCcEEEccCCcCccCCCCCCC-c-----ccccEEEcCCCccccccCCCCCCCCCccEEEccccccccc--cCccC-
Q 040468 261 CQLRFLRILDLSNNTIFGTLPSCFS-P-----AYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGS--IPNRI- 331 (543)
Q Consensus 261 ~~l~~L~~L~l~~~~~~~~~~~~~~-~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~--~~~~l- 331 (543)
..+++|+.|++++|.+.+. +..+. . ++|+.|++++|.+.+..+..+..+++|++|++++|++.+. .+..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 6667777777777776655 32221 2 7888888888888877777888999999999999987653 23333
Q ss_pred -CCCCCCCEEEccCccccc--ccc-hhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccc
Q 040468 332 -DRLPQLSYLLLANNYIEG--EIP-VQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYAS 407 (543)
Q Consensus 332 -~~~~~L~~L~l~~n~i~~--~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 407 (543)
..+++|+.|++++|++++ .++ ..+..+++|++|++++|.+.+..|....
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--------------------------- 249 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC--------------------------- 249 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC---------------------------
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh---------------------------
Confidence 889999999999999983 222 3456789999999999998754421110
Q ss_pred cccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhc
Q 040468 408 SYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGY 487 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~ 487 (543)
..+++|++|++++|+++ .+|..+.
T Consensus 250 ------------------------------------------------------~~l~~L~~L~Ls~N~l~-~ip~~~~- 273 (312)
T 1wwl_A 250 ------------------------------------------------------DWPSQLNSLNLSFTGLK-QVPKGLP- 273 (312)
T ss_dssp ------------------------------------------------------CCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred ------------------------------------------------------hhcCCCCEEECCCCccC-hhhhhcc-
Confidence 00568999999999999 8888777
Q ss_pred ccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcc
Q 040468 488 LTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG 527 (543)
Q Consensus 488 l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~ 527 (543)
++|++|+|++|++++. |. +..+++|+.|++++|++++
T Consensus 274 -~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred -CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 8999999999999965 65 8999999999999999974
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=2.2e-24 Score=220.53 Aligned_cols=234 Identities=24% Similarity=0.236 Sum_probs=161.4
Q ss_pred CcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEcc
Q 040468 193 NLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLS 272 (543)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 272 (543)
+|+.|++++|.+.+..|..+..+++|++|++++|.+....+ +..+++|+.|++++|.+.+..+ .++|+.|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence 45555555555554444455555555555555555543222 5556666666666666554321 2567777777
Q ss_pred CCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCC-CCCCCCEEEccCccccccc
Q 040468 273 NNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRID-RLPQLSYLLLANNYIEGEI 351 (543)
Q Consensus 273 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~-~~~~L~~L~l~~n~i~~~~ 351 (543)
+|.+.+..+.. +++|+.|++++|.+++..+..+..+++|++|++++|.+++..|..+. .+++|+.|++++|.+++.
T Consensus 108 ~N~l~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~- 184 (487)
T 3oja_A 108 NNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV- 184 (487)
T ss_dssp SSCCCCEEECC--CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred CCcCCCCCccc--cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-
Confidence 77666544332 46778888888888777666777788888888888888876676665 688888888888888754
Q ss_pred chhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCccc
Q 040468 352 PVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYA 431 (543)
Q Consensus 352 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (543)
+. ...+++|++|++++|.+.+ +|+.+..
T Consensus 185 ~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~-------------------------------------------------- 212 (487)
T 3oja_A 185 KG-QVVFAKLKTLDLSSNKLAF-MGPEFQS-------------------------------------------------- 212 (487)
T ss_dssp EC-CCCCTTCCEEECCSSCCCE-ECGGGGG--------------------------------------------------
T ss_pred cc-cccCCCCCEEECCCCCCCC-CCHhHcC--------------------------------------------------
Confidence 32 3458888888888888864 3332221
Q ss_pred ccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccc-cccChhhh
Q 040468 432 LDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLT-GTIPTTFS 510 (543)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~-~~~~~~~~ 510 (543)
+++|+.|++++|.++ .+|..+..+++|+.|++++|++. +.+|.++.
T Consensus 213 --------------------------------l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 213 --------------------------------AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp --------------------------------GTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred --------------------------------CCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 568888888888888 57877888888888888888887 56777788
Q ss_pred ccCCCCeeeCC
Q 040468 511 NLKQIESLDLS 521 (543)
Q Consensus 511 ~l~~L~~L~l~ 521 (543)
.+++|+.++++
T Consensus 260 ~l~~L~~l~~~ 270 (487)
T 3oja_A 260 KNQRVQTVAKQ 270 (487)
T ss_dssp TCHHHHHHHHH
T ss_pred hCCCCcEEecc
Confidence 88888888886
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=1.3e-22 Score=192.25 Aligned_cols=132 Identities=23% Similarity=0.227 Sum_probs=66.9
Q ss_pred CCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCC-CcccccEEEcCCCccccccCCCCCCCCCccEEEcc
Q 040468 241 FLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCF-SPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLS 319 (543)
Q Consensus 241 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 319 (543)
+++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+ .+++|+.|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 34444444444444433344444444444444444443333222 24455555555555554444455555555555555
Q ss_pred ccccccccCccCCCCCCCCEEEccCcccccc-cchhhhCCCCCCEEeCCCCccc
Q 040468 320 YNCLHGSIPNRIDRLPQLSYLLLANNYIEGE-IPVQLCQLKEVQLIDLSHNNLS 372 (543)
Q Consensus 320 ~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~l~~n~~~ 372 (543)
+|.+.+..+..+..+++|+.|++++|++++. +|..+..+++|++|++++|.+.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 5555544444455555566666666555532 3555555566666666666554
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=1.6e-24 Score=208.98 Aligned_cols=129 Identities=19% Similarity=0.205 Sum_probs=56.5
Q ss_pred CCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccc-cCCchhhh------cCCCCCcEEEcCCCcCccCCchhh--
Q 040468 69 NTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQ-GHIPVEIG------TYLPGLMEFNLSRNAFNGSIPSSF-- 139 (543)
Q Consensus 69 l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~-~~~~~~~~------~~l~~L~~L~L~~~~i~~~~~~~l-- 139 (543)
.++|++|+++++.+ ..|..+... |++|++++|.+. ..++..+. ..+++|++|++++|.+++..|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 34455555555554 333322222 555555555442 12333332 014455555555555554444443
Q ss_pred cCCCCCCEEecccccccccCchHhhhCC-----CCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCc
Q 040468 140 ADMQMLARLDISYNQLTGEIPERMATGC-----FSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNN 203 (543)
Q Consensus 140 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~-----~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~ 203 (543)
..+++|++|++++|.+.+. |..+.. + ++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~-l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAE-LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHH-HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT
T ss_pred hcCCCccEEEccCCCCcch-hHHHHH-HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC
Confidence 4455555555555555422 322221 2 444444444444444333444444444444444444
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=1.4e-21 Score=184.25 Aligned_cols=153 Identities=24% Similarity=0.292 Sum_probs=80.9
Q ss_pred CCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCC-cccccEEEcC
Q 040468 217 RLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFS-PAYIEQVHLS 295 (543)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~ 295 (543)
..+.++++++.+. ..|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.+.......+. +++|+.|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 3556666666655 2333222 4566666666666655555566666666666666655544443332 4555555555
Q ss_pred CCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468 296 KNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372 (543)
Q Consensus 296 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 372 (543)
+|.+++.....+..+++|++|++++|.++...+..+..+++|+.|++++|++++..+..|..+++|++|++++|.+.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence 55555444444455555555555555555444444555555555555555555333333445555555555555443
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=9e-22 Score=186.39 Aligned_cols=208 Identities=21% Similarity=0.241 Sum_probs=111.3
Q ss_pred CCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeC
Q 040468 120 GLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQL 199 (543)
Q Consensus 120 ~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 199 (543)
+|++|++++|.+++..+..+.++++|++|++++|.+. .++...+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 4555555555555444445555555555555555555 333333444555555555555555444445555566666666
Q ss_pred CCCccCccCchhhhcCCCCCEEEccCCcCCCc-ccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCcc
Q 040468 200 DGNNFSGEIPESLSKCRRLGGLYLSDNHLSGE-IPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFG 278 (543)
Q Consensus 200 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 278 (543)
.+|.+....+..+..+++|++|++++|.+... .|..+..+++|+.|++++|.+.+..+..+..+++|+.+.+
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l------- 180 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL------- 180 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCE-------
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccce-------
Confidence 66555544333455556666666666655532 3555666666666666666666554444444333331000
Q ss_pred CCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccc
Q 040468 279 TLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIE 348 (543)
Q Consensus 279 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~ 348 (543)
.|++++|.+++.....+. ..+|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 181 ------------~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 181 ------------SLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp ------------EEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred ------------eeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 344444444433333332 235666666666666444445566666777777776665
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=3.6e-22 Score=188.52 Aligned_cols=133 Identities=22% Similarity=0.244 Sum_probs=66.7
Q ss_pred hcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEE
Q 040468 213 SKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQV 292 (543)
Q Consensus 213 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 292 (543)
..+++|+.+++.++.+.. ...+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.
T Consensus 38 ~~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~--------------- 98 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ--------------- 98 (272)
T ss_dssp HHHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCC---------------
T ss_pred ccccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC---------------
Confidence 345556666666555542 12245555555555555555432 24444555555555555444
Q ss_pred EcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468 293 HLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372 (543)
Q Consensus 293 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 372 (543)
+..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|.+.
T Consensus 99 --------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 99 --------SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170 (272)
T ss_dssp --------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred --------ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC
Confidence 433334444555555555555555443444455555555555555555333344445555555555555543
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=5.6e-21 Score=180.15 Aligned_cols=199 Identities=28% Similarity=0.300 Sum_probs=94.0
Q ss_pred eeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcC
Q 040468 23 LTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVS 102 (543)
Q Consensus 23 L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls 102 (543)
.+.+++++++++ .+|..+. +++++|++++|.++ .++...+.++++|++|++++|++....+..+..+++|++|+++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 445555555555 2333221 44555555555554 2333223455555555555555544444444555555555555
Q ss_pred CCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCC
Q 040468 103 NNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQG 182 (543)
Q Consensus 103 ~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 182 (543)
+|.+. .++...+..+++|++|++++|.++...+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+..
T Consensus 94 ~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 94 DNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp SSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcE
Confidence 55555 344333333555555555555555444444455555555555555544 3444433344455555555554444
Q ss_pred cCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCc
Q 040468 183 HIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNH 227 (543)
Q Consensus 183 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 227 (543)
..+..+..+++|+.|++++|.+....+..+..+++|+.+++++|.
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 333334444444444444444443323333344444444444443
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=3.2e-21 Score=183.36 Aligned_cols=156 Identities=21% Similarity=0.199 Sum_probs=101.6
Q ss_pred hhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccE
Q 040468 212 LSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQ 291 (543)
Q Consensus 212 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 291 (543)
+..+++++.++++++.+. ..|..+ .+.++.|++++|.+.+..+..+..+++|+.|++++|.+.+.... ..+++|+.
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCC-cCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence 456677888888887776 344333 25778888888888777677777788888888888777654332 34566666
Q ss_pred EEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcc
Q 040468 292 VHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNL 371 (543)
Q Consensus 292 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~ 371 (543)
|++++|.++. .+..+..+++|++|++++|+++...+..|..+++|+.|++++|++++..+..|..+++|+.|++++|.+
T Consensus 82 L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 6666666653 333455666666666666666654455566666666666666666644445555666666666666665
Q ss_pred c
Q 040468 372 S 372 (543)
Q Consensus 372 ~ 372 (543)
.
T Consensus 161 ~ 161 (290)
T 1p9a_G 161 T 161 (290)
T ss_dssp S
T ss_pred C
Confidence 4
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=188.48 Aligned_cols=226 Identities=20% Similarity=0.221 Sum_probs=167.6
Q ss_pred CCCEEEccCCcCCCcccc---cccCCCCCcEEEccCCcccccCcccc--cCCCCCcEEEccCCcCccCCCC-----CCCc
Q 040468 217 RLGGLYLSDNHLSGEIPR---WLGNLSFLVDIIMPNNNLEGLIPIEF--CQLRFLRILDLSNNTIFGTLPS-----CFSP 286 (543)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~---~l~~~~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~-----~~~~ 286 (543)
.++.+.+.++.+...... .+..+++|++|++++|.+.+..|..+ ..+++|+.|++++|.+.+..+. ...+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 455555555544311100 11223557777777777776666665 6777788888887777653331 1236
Q ss_pred ccccEEEcCCCccccccCCCCCCCCCccEEEccccccccc--c--CccCCCCCCCCEEEccCcccccccch----hhhCC
Q 040468 287 AYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGS--I--PNRIDRLPQLSYLLLANNYIEGEIPV----QLCQL 358 (543)
Q Consensus 287 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~--~--~~~l~~~~~L~~L~l~~n~i~~~~~~----~l~~l 358 (543)
++|+.|++++|.+.+..+..+..+++|++|++++|++.+. . +..+..+++|+.|++++|+++. ++. .+..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcC
Confidence 7888899999988877778888999999999999987642 1 3345788999999999999973 332 35788
Q ss_pred CCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCC
Q 040468 359 KEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSR 438 (543)
Q Consensus 359 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (543)
++|++|++++|.+.+..|+.+..+..
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~------------------------------------------------------ 249 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMW------------------------------------------------------ 249 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCC------------------------------------------------------
T ss_pred CCCCEEECCCCCCCccchhhHHhccC------------------------------------------------------
Confidence 99999999999998766665544321
Q ss_pred CCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCee
Q 040468 439 TPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESL 518 (543)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L 518 (543)
+++|++|++++|+++ .+|..+. ++|++|+|++|++++. |. +..+++|+.|
T Consensus 250 -------------------------~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L 299 (310)
T 4glp_A 250 -------------------------SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNL 299 (310)
T ss_dssp -------------------------CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCE
T ss_pred -------------------------cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEE
Confidence 468999999999999 7888775 8999999999999954 43 6889999999
Q ss_pred eCCCCcCcc
Q 040468 519 DLSYNLLHG 527 (543)
Q Consensus 519 ~l~~n~i~~ 527 (543)
++++|++++
T Consensus 300 ~L~~N~l~~ 308 (310)
T 4glp_A 300 TLDGNPFLV 308 (310)
T ss_dssp ECSSTTTSC
T ss_pred ECcCCCCCC
Confidence 999999974
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=1.1e-20 Score=178.35 Aligned_cols=188 Identities=24% Similarity=0.285 Sum_probs=124.4
Q ss_pred ccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCc
Q 040468 188 KFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLR 267 (543)
Q Consensus 188 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 267 (543)
+..+++|++|++++|.+.+. ..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+
T Consensus 59 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 33444444555544444421 2344555555555555555544444455566666666666666655555556666666
Q ss_pred EEEccCCcCccCCCCCC-CcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcc
Q 040468 268 ILDLSNNTIFGTLPSCF-SPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNY 346 (543)
Q Consensus 268 ~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~ 346 (543)
.|++++|.+.+..+..+ .+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|+
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 66666666665544433 36677777777777776666667788888888888888887667778888889999999888
Q ss_pred cccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCC
Q 040468 347 IEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSL 384 (543)
Q Consensus 347 i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 384 (543)
+. +.+++|++++++.|.+.+.+|..+..+..
T Consensus 217 ~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 217 WD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp BC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred cc-------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 76 34667888888889888888887766553
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.85 E-value=2.9e-20 Score=176.73 Aligned_cols=195 Identities=26% Similarity=0.199 Sum_probs=80.3
Q ss_pred eeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcC
Q 040468 23 LTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVS 102 (543)
Q Consensus 23 L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls 102 (543)
++++++++++++ .+|..+ .+++++|++++|.+++..+. .+..+++|++|++++|.+.+..+. ..+++|++|+++
T Consensus 12 l~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls 85 (290)
T 1p9a_G 12 HLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLS 85 (290)
T ss_dssp CCEEECTTSCCS-SCCSCC--CTTCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECC
T ss_pred ccEEECCCCCCC-cCCCCC--CCCCCEEEcCCCcCCccCHH-HhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECC
Confidence 444444444444 223222 13444444444444422222 234444444444444444332221 344444444444
Q ss_pred CCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCC
Q 040468 103 NNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQG 182 (543)
Q Consensus 103 ~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 182 (543)
+|.+. .+|..+.. +++|++|++++|++++..+..|.++++|++|++++|++. .++.+.+..+++|+.|++++|++..
T Consensus 86 ~N~l~-~l~~~~~~-l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 86 HNQLQ-SLPLLGQT-LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp SSCCS-SCCCCTTT-CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCcCC-cCchhhcc-CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCCCcCCc
Confidence 44444 33333322 444444444444444333334444444444444444444 3333333334444444444444443
Q ss_pred cCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCc
Q 040468 183 HIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNH 227 (543)
Q Consensus 183 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 227 (543)
.....+..+++|+.|++++|.+. .+|..+....+|+.+++.+|.
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCC
Confidence 33333333444444444444443 223333333334444444333
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=5.9e-22 Score=193.47 Aligned_cols=254 Identities=14% Similarity=0.155 Sum_probs=153.9
Q ss_pred CCCEEeccCCcccccCChhhhhcC--CCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccC-CchhhhcCCCCCc
Q 040468 46 DLKNANLSHLNLSGEFPNWLVENN--TNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGH-IPVEIGTYLPGLM 122 (543)
Q Consensus 46 ~L~~L~l~~~~~~~~~~~~~~~~l--~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~-~~~~~~~~l~~L~ 122 (543)
.++.++++++.+.. ..+..+ ++++.|+++++.+.+..+. +..+++|++|++++|.+.+. ++..+ ..+++|+
T Consensus 48 ~~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~-~~~~~L~ 121 (336)
T 2ast_B 48 LWQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGIL-SQCSKLQ 121 (336)
T ss_dssp TSSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHH-TTBCCCS
T ss_pred hheeeccccccCCH----HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHH-hhCCCCC
Confidence 36667777665541 223444 6677777777766554443 44567777777777766533 33333 3367777
Q ss_pred EEEcCCCcCccCCchhhcCCCCCCEEecccc-cccccCchHhhhCCCCCCEEEccCC-cCCCc-CcccccCCC-CcCEEe
Q 040468 123 EFNLSRNAFNGSIPSSFADMQMLARLDISYN-QLTGEIPERMATGCFSLEILALSNN-SLQGH-IFSKKFSLT-NLMTLQ 198 (543)
Q Consensus 123 ~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~-~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~-~~~~l~~l~-~L~~L~ 198 (543)
+|++++|.+++..+..+..+++|++|++++| .+++......+..+++|++|++++| .+++. .+..+..++ +|++|+
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 7777777766556666667777777777777 4543222333445777777777777 66543 334455667 777777
Q ss_pred CCCCc--cC-ccCchhhhcCCCCCEEEccCCc-CCCcccccccCCCCCcEEEccCCc-ccccCcccccCCCCCcEEEccC
Q 040468 199 LDGNN--FS-GEIPESLSKCRRLGGLYLSDNH-LSGEIPRWLGNLSFLVDIIMPNNN-LEGLIPIEFCQLRFLRILDLSN 273 (543)
Q Consensus 199 l~~~~--~~-~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~ 273 (543)
+++|. ++ ...+..+..+++|+.|++++|. ++...+..+..+++|+.|++++|. +.......+..+++|+.|++++
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence 77773 33 2344555667777777777777 554555667777777777777774 3222223466677788888877
Q ss_pred CcCccCCCCCCC-cccccEEEcCCCccccccCCCCC
Q 040468 274 NTIFGTLPSCFS-PAYIEQVHLSKNKIEGRLESVIP 308 (543)
Q Consensus 274 ~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~ 308 (543)
| +.... +.. ...++.|++++|.+++..+..+.
T Consensus 282 ~-i~~~~--~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 282 I-VPDGT--LQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp S-SCTTC--HHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred c-cCHHH--HHHHHhhCcceEEecccCccccCCccc
Confidence 7 22111 111 23466677777777766555444
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=3.8e-20 Score=172.40 Aligned_cols=105 Identities=22% Similarity=0.234 Sum_probs=58.6
Q ss_pred CcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCc
Q 040468 266 LRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANN 345 (543)
Q Consensus 266 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n 345 (543)
.+.++++++.+...+... ++.++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 16 ~~~l~~~~~~l~~~p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GTEEECTTCCCSSCCSCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CeEEecCCCCccccCCCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 344555555444332222 245555555555555555555555666666666666666555555566666666666666
Q ss_pred ccccccchhhhCCCCCCEEeCCCCccc
Q 040468 346 YIEGEIPVQLCQLKEVQLIDLSHNNLS 372 (543)
Q Consensus 346 ~i~~~~~~~l~~l~~L~~L~l~~n~~~ 372 (543)
++++..+..|..+++|++|++++|.+.
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~ 120 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLK 120 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cccccChhHhcccCCCCEEEcCCCcCC
Confidence 665444455556666666666666554
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=1.3e-22 Score=202.03 Aligned_cols=168 Identities=20% Similarity=0.193 Sum_probs=83.7
Q ss_pred ccccCCCCcCEEeCCCCccCccCc----hhhhcCCCCCEEEccCCcCCC---cccccc-------cCCCCCcEEEccCCc
Q 040468 186 SKKFSLTNLMTLQLDGNNFSGEIP----ESLSKCRRLGGLYLSDNHLSG---EIPRWL-------GNLSFLVDIIMPNNN 251 (543)
Q Consensus 186 ~~l~~l~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~---~~~~~l-------~~~~~L~~L~l~~~~ 251 (543)
..+..+++|+.|++++|.+....+ ..+..+++|++|++++|.+.. ..|..+ ..+++|+.|++++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 344455667777777666654322 224456666666666654331 122222 455666666666666
Q ss_pred ccc----cCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCC---------CCccEEEc
Q 040468 252 LEG----LIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDS---------PNLVTLDL 318 (543)
Q Consensus 252 ~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---------~~L~~L~l 318 (543)
+.. .++..+..+++|+.|++++|.+.......+. ..+..+ ++|++|++
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~-------------------~~l~~l~~~~~~~~~~~L~~L~L 166 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA-------------------RALQELAVNKKAKNAPPLRSIIC 166 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHH-------------------HHHHHHHHHHHHHTCCCCCEEEC
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHH-------------------HHHHHHhhhhhcccCCCCcEEEC
Confidence 554 2344445555666666665554322111110 011111 55666666
Q ss_pred ccccccc-ccC---ccCCCCCCCCEEEccCcccccc-----cchhhhCCCCCCEEeCCCCccc
Q 040468 319 SYNCLHG-SIP---NRIDRLPQLSYLLLANNYIEGE-----IPVQLCQLKEVQLIDLSHNNLS 372 (543)
Q Consensus 319 ~~~~i~~-~~~---~~l~~~~~L~~L~l~~n~i~~~-----~~~~l~~l~~L~~L~l~~n~~~ 372 (543)
++|++++ ..+ ..+..+++|+.|++++|+++.. .+..+..+++|++|++++|.+.
T Consensus 167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229 (386)
T ss_dssp CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence 6665542 222 2344555666666666655521 2224555666666666666553
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=3.5e-21 Score=189.70 Aligned_cols=253 Identities=18% Similarity=0.184 Sum_probs=167.7
Q ss_pred EEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCCh---hhhhcCC-CCcEEEccCCcccccCCCCCcCC-----CC
Q 040468 25 SISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPN---WLVENNT-NLETLLLANNSLFGSFRMPIHSH-----QK 95 (543)
Q Consensus 25 ~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~l~-~L~~L~L~~~~~~~~~~~~~~~~-----~~ 95 (543)
.++++.+.+++.+|..+...++|++|++++|.+++..+. ..+..++ +|++|++++|++.+..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 457888888888887777777799999999998754441 3346677 89999999998876666555553 88
Q ss_pred CCEEEcCCCccccCCchhhhc---CC-CCCcEEEcCCCcCccCCchhhc----C-CCCCCEEecccccccccCchHhh--
Q 040468 96 LATLDVSNNFFQGHIPVEIGT---YL-PGLMEFNLSRNAFNGSIPSSFA----D-MQMLARLDISYNQLTGEIPERMA-- 164 (543)
Q Consensus 96 L~~L~ls~~~i~~~~~~~~~~---~l-~~L~~L~L~~~~i~~~~~~~l~----~-l~~L~~L~L~~~~~~~~~~~~~~-- 164 (543)
|++|++++|.+++..+..++. .+ ++|++|++++|.+++..+..+. . .++|++|++++|.+.+.....+.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999888555554433 13 7899999999988866554443 3 25889999998888744333321
Q ss_pred -hCCC-CCCEEEccCCcCCCcCcccc----cCC-CCcCEEeCCCCccCcc----Cchhhhc-CCCCCEEEccCCcCCCcc
Q 040468 165 -TGCF-SLEILALSNNSLQGHIFSKK----FSL-TNLMTLQLDGNNFSGE----IPESLSK-CRRLGGLYLSDNHLSGEI 232 (543)
Q Consensus 165 -~~~~-~L~~L~l~~n~~~~~~~~~l----~~l-~~L~~L~l~~~~~~~~----~~~~l~~-~~~L~~L~l~~~~~~~~~ 232 (543)
...+ +|++|++++|.+++..+..+ ... ++|+.|++++|.+... ++..+.. .++|++|++++|.+....
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 2243 78888888888775554333 334 4788888888877653 2333433 347777777777776543
Q ss_pred c----ccccCCCCCcEEEccCCcccccC-------cccccCCCCCcEEEccCCcCc
Q 040468 233 P----RWLGNLSFLVDIIMPNNNLEGLI-------PIEFCQLRFLRILDLSNNTIF 277 (543)
Q Consensus 233 ~----~~l~~~~~L~~L~l~~~~~~~~~-------~~~l~~l~~L~~L~l~~~~~~ 277 (543)
+ ..+..+++|+.|++++|.+.... +..+..+++|+.|++++|.+.
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 3 23355667777777777643322 223444555555555555544
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=7e-21 Score=185.86 Aligned_cols=253 Identities=15% Similarity=0.118 Sum_probs=147.8
Q ss_pred eeEEEeeCCCCCCCcchhccCC--CCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCccccc-CCCCCcCCCCCCEE
Q 040468 23 LTSISLSGYIDGGTFPKFLYHQ--HDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGS-FRMPIHSHQKLATL 99 (543)
Q Consensus 23 L~~L~L~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L 99 (543)
+++++++++.+. +..+..+ +++++++++++.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh--hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 566777766655 3444555 6777777777766654444 24567777777777766543 45556667777777
Q ss_pred EcCCCccccCCchhhhcCCCCCcEEEcCCC-cCcc-CCchhhcCCCCCCEEecccc-cccccCchHhhhCCC-CCCEEEc
Q 040468 100 DVSNNFFQGHIPVEIGTYLPGLMEFNLSRN-AFNG-SIPSSFADMQMLARLDISYN-QLTGEIPERMATGCF-SLEILAL 175 (543)
Q Consensus 100 ~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~-~i~~-~~~~~l~~l~~L~~L~L~~~-~~~~~~~~~~~~~~~-~L~~L~l 175 (543)
++++|.+.+..+..+.. +++|++|++++| .+++ .++..+.++++|++|++++| .+.+......+..++ +|++|++
T Consensus 124 ~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp ECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred eCcCcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 77777666555555555 677777777776 4553 24445666677777777777 655322223334466 7777777
Q ss_pred cCC--cCC-CcCcccccCCCCcCEEeCCCCc-cCccCchhhhcCCCCCEEEccCCc-CCCcccccccCCCCCcEEEccCC
Q 040468 176 SNN--SLQ-GHIFSKKFSLTNLMTLQLDGNN-FSGEIPESLSKCRRLGGLYLSDNH-LSGEIPRWLGNLSFLVDIIMPNN 250 (543)
Q Consensus 176 ~~n--~~~-~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~ 250 (543)
++| .++ ...+..+..+++|+.|++++|. ++...+..+..+++|++|++++|. +.......+..+++|+.|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 776 333 2233344556777777777776 454555566666777777777764 22222224566777777777766
Q ss_pred cccccCcccccCCCCCcEEEccCCcCccCCCCCC
Q 040468 251 NLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCF 284 (543)
Q Consensus 251 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 284 (543)
+.......+. ..+..|++++|.+++..+..+
T Consensus 283 -i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 283 -VPDGTLQLLK--EALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp -SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSC
T ss_pred -cCHHHHHHHH--hhCcceEEecccCccccCCcc
Confidence 3322111221 124445566666666555544
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=3.1e-20 Score=178.84 Aligned_cols=226 Identities=19% Similarity=0.181 Sum_probs=123.7
Q ss_pred CCCCEEeccCCcccccCChhh--hhcCCCCcEEEccCCcccccCCCCC--cCCCCCCEEEcCCCccccCCc----hhhhc
Q 040468 45 HDLKNANLSHLNLSGEFPNWL--VENNTNLETLLLANNSLFGSFRMPI--HSHQKLATLDVSNNFFQGHIP----VEIGT 116 (543)
Q Consensus 45 ~~L~~L~l~~~~~~~~~~~~~--~~~l~~L~~L~L~~~~~~~~~~~~~--~~~~~L~~L~ls~~~i~~~~~----~~~~~ 116 (543)
..++.+.+.++.++......+ +..+++|++|++++|++.+..|..+ ..+++|++|++++|.+.+..+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~- 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW- 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-
Confidence 456777777776653211111 1234668888888888877777776 778888888888888774333 2223
Q ss_pred CCCCCcEEEcCCCcCccCCchhhcCCCCCCEEeccccccccc--Cch-HhhhCCCCCCEEEccCCcCCCcCcc---cccC
Q 040468 117 YLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGE--IPE-RMATGCFSLEILALSNNSLQGHIFS---KKFS 190 (543)
Q Consensus 117 ~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~--~~~-~~~~~~~~L~~L~l~~n~~~~~~~~---~l~~ 190 (543)
.+++|++|++++|.+.+..+..+.++++|++|++++|.+.+. ++. .....+++|++|++++|.++..... .+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 377888888888888766667777788888888888775421 111 1112355566666666655421110 1234
Q ss_pred CCCcCEEeCCCCccCccCchhhhcC---CCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCc
Q 040468 191 LTNLMTLQLDGNNFSGEIPESLSKC---RRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLR 267 (543)
Q Consensus 191 l~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 267 (543)
+++|++|++++|.+.+..|..+..+ ++|++|++++|.+. ..|..+. ++|+.|++++|.+.+. |. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 4555555555555554433333333 34444555444444 2232221 3444444444444432 11 23334444
Q ss_pred EEEccCCcC
Q 040468 268 ILDLSNNTI 276 (543)
Q Consensus 268 ~L~l~~~~~ 276 (543)
.|++++|.+
T Consensus 298 ~L~L~~N~l 306 (310)
T 4glp_A 298 NLTLDGNPF 306 (310)
T ss_dssp CEECSSTTT
T ss_pred EEECcCCCC
Confidence 444444433
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=1.4e-21 Score=194.60 Aligned_cols=243 Identities=18% Similarity=0.190 Sum_probs=154.4
Q ss_pred cchhccCCCCCCEEeccCCcccccCChhh---hhcCCCCcEEEccCCcc---cccCCCCC-------cCCCCCCEEEcCC
Q 040468 37 FPKFLYHQHDLKNANLSHLNLSGEFPNWL---VENNTNLETLLLANNSL---FGSFRMPI-------HSHQKLATLDVSN 103 (543)
Q Consensus 37 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~l~~L~~L~L~~~~~---~~~~~~~~-------~~~~~L~~L~ls~ 103 (543)
++..+..+++|++|+|++|.+++..+..+ +..+++|++|++++|.+ .+..|.++ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 55566777888888888887765433332 34677888888887643 23333333 5778888888888
Q ss_pred CccccC----CchhhhcCCCCCcEEEcCCCcCccCCchh----hcCC---------CCCCEEeccccccccc-Cch--Hh
Q 040468 104 NFFQGH----IPVEIGTYLPGLMEFNLSRNAFNGSIPSS----FADM---------QMLARLDISYNQLTGE-IPE--RM 163 (543)
Q Consensus 104 ~~i~~~----~~~~~~~~l~~L~~L~L~~~~i~~~~~~~----l~~l---------~~L~~L~L~~~~~~~~-~~~--~~ 163 (543)
|.+.+. ++..+.. +++|++|++++|.++...+.. +..+ ++|++|++++|.+... ++. ..
T Consensus 104 n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSK-HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp CCCCTTTHHHHHHHHHH-CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHh-CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 877742 4444544 778888888888776333322 3333 7788888888777622 221 23
Q ss_pred hhCCCCCCEEEccCCcCCCc-----CcccccCCCCcCEEeCCCCccC----ccCchhhhcCCCCCEEEccCCcCCCc---
Q 040468 164 ATGCFSLEILALSNNSLQGH-----IFSKKFSLTNLMTLQLDGNNFS----GEIPESLSKCRRLGGLYLSDNHLSGE--- 231 (543)
Q Consensus 164 ~~~~~~L~~L~l~~n~~~~~-----~~~~l~~l~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~~~~~~~--- 231 (543)
+..+++|++|++++|.+... .+..+..+++|+.|++++|.++ ..++..+..+++|++|++++|.+...
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 33477788888887776621 2225566777778888777764 34555667777777777777776643
Q ss_pred -cccccc--CCCCCcEEEccCCcccc----cCcccc-cCCCCCcEEEccCCcCccCC
Q 040468 232 -IPRWLG--NLSFLVDIIMPNNNLEG----LIPIEF-CQLRFLRILDLSNNTIFGTL 280 (543)
Q Consensus 232 -~~~~l~--~~~~L~~L~l~~~~~~~----~~~~~l-~~l~~L~~L~l~~~~~~~~~ 280 (543)
++..+. .+++|+.|++++|.+.. .++..+ ..+++|+.|++++|.+.+..
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 334443 36777777777777765 244444 44677777777777766443
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.83 E-value=8.7e-21 Score=186.87 Aligned_cols=263 Identities=18% Similarity=0.193 Sum_probs=161.7
Q ss_pred EEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCC----CCCcCCC-CCCEEEcCCCccccCCchhhhcC----CC
Q 040468 49 NANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFR----MPIHSHQ-KLATLDVSNNFFQGHIPVEIGTY----LP 119 (543)
Q Consensus 49 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~----~~~~~~~-~L~~L~ls~~~i~~~~~~~~~~~----l~ 119 (543)
++.++.+.+++.+|.. ....++|++|++++|.+.+..+ .++..++ +|++|++++|.+.+..+..+... .+
T Consensus 2 ~~~ls~n~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEF-TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHH-HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHH-HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 4677888887666654 3556669999999998866655 6677787 89999999998886555555541 27
Q ss_pred CCcEEEcCCCcCccCCchhh----cCC-CCCCEEecccccccccCchHhhh---C-CCCCCEEEccCCcCCCcCccc---
Q 040468 120 GLMEFNLSRNAFNGSIPSSF----ADM-QMLARLDISYNQLTGEIPERMAT---G-CFSLEILALSNNSLQGHIFSK--- 187 (543)
Q Consensus 120 ~L~~L~L~~~~i~~~~~~~l----~~l-~~L~~L~L~~~~~~~~~~~~~~~---~-~~~L~~L~l~~n~~~~~~~~~--- 187 (543)
+|++|++++|.+++..+..+ ..+ ++|++|++++|.+.+..+..+.. . .++|++|++++|.+.+.....
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 88999999988886655543 344 78888888888887444433322 2 357888888888776433322
Q ss_pred -ccCCC-CcCEEeCCCCccCccCchhh----hcC-CCCCEEEccCCcCCCc----ccccccC-CCCCcEEEccCCccccc
Q 040468 188 -KFSLT-NLMTLQLDGNNFSGEIPESL----SKC-RRLGGLYLSDNHLSGE----IPRWLGN-LSFLVDIIMPNNNLEGL 255 (543)
Q Consensus 188 -l~~l~-~L~~L~l~~~~~~~~~~~~l----~~~-~~L~~L~l~~~~~~~~----~~~~l~~-~~~L~~L~l~~~~~~~~ 255 (543)
+...+ +|++|++++|.++...+..+ ..+ ++|+.|++++|.+... ++..+.. .++|+.|++++|.+.+.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 23444 77777777777765544332 333 4677777777766532 2223333 34666666666666543
Q ss_pred Cc----ccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccC
Q 040468 256 IP----IEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIP 328 (543)
Q Consensus 256 ~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 328 (543)
.+ ..+..+++|+.|++++|.+.+..... + ......+..+++|+.|++++|.+.+..+
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~---------------~-~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQ---------------C-KALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHH---------------H-HHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHH---------------H-HHHHHHhccCCceEEEecCCCcCCCcch
Confidence 32 12234455555555555432111000 0 1123355677778888888887775433
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=4.9e-20 Score=170.40 Aligned_cols=196 Identities=15% Similarity=0.178 Sum_probs=126.9
Q ss_pred CCcEEEccCCcccccCcccccCCCCCcEEEccCCc-CccCCCCCC-CcccccEEEcCC-CccccccCCCCCCCCCccEEE
Q 040468 241 FLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNT-IFGTLPSCF-SPAYIEQVHLSK-NKIEGRLESVIPDSPNLVTLD 317 (543)
Q Consensus 241 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~ 317 (543)
+++.|++++|.+.+..+..+..+++|+.|++++|. +....+..+ .+++|+.|++++ |.+++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 55666666666655555555566666666666664 544443332 355666666665 666655556666777788888
Q ss_pred ccccccccccCccCCCCCCCC---EEEccCc-ccccccchhhhCCCCCC-EEeCCCCcccccCCCCcccCCCCCCCCCCC
Q 040468 318 LSYNCLHGSIPNRIDRLPQLS---YLLLANN-YIEGEIPVQLCQLKEVQ-LIDLSHNNLSGHIPPCLVNTSLSEGHDEPV 392 (543)
Q Consensus 318 l~~~~i~~~~~~~l~~~~~L~---~L~l~~n-~i~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~ 392 (543)
+++|++++ +|. +..+++|+ .|++++| .+++..+..|.++++|+ .|++++|.+. .+|+....
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~----------- 177 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFN----------- 177 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTT-----------
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcC-----------
Confidence 88887774 454 67777777 8888888 77755555677788888 8888888775 33322111
Q ss_pred CCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEc
Q 040468 393 APTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDL 472 (543)
Q Consensus 393 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 472 (543)
.++|++|++
T Consensus 178 -----------------------------------------------------------------------~~~L~~L~L 186 (239)
T 2xwt_C 178 -----------------------------------------------------------------------GTKLDAVYL 186 (239)
T ss_dssp -----------------------------------------------------------------------TCEEEEEEC
T ss_pred -----------------------------------------------------------------------CCCCCEEEc
Confidence 246788888
Q ss_pred ccCc-cccccChhhhcc-cccCeeeCcCCccccccChhhhccCCCCeeeCCCCc
Q 040468 473 SCNK-LTGEIPTQIGYL-TKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL 524 (543)
Q Consensus 473 s~n~-l~~~~~~~l~~l-~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~ 524 (543)
++|+ ++...+..|..+ ++|++|++++|++++. |.. .+++|+.|+++++.
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC-
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCcc
Confidence 8884 774445667777 8888888888888743 333 56677888877764
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=3.3e-19 Score=164.80 Aligned_cols=196 Identities=15% Similarity=0.133 Sum_probs=85.6
Q ss_pred CCcEEEcCCCcCccCCchhhcCCCCCCEEeccccc-ccccCchHhhhCCCCCCEEEccC-CcCCCcCcccccCCCCcCEE
Q 040468 120 GLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQ-LTGEIPERMATGCFSLEILALSN-NSLQGHIFSKKFSLTNLMTL 197 (543)
Q Consensus 120 ~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L 197 (543)
+|++|++++|.+++..+..+.++++|++|++++|. +. .++...+..+++|++|++++ |.+...
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i-------------- 96 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYI-------------- 96 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEE--------------
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEc--------------
Confidence 45555555555553333344445555555555553 33 33333333344444444443 333322
Q ss_pred eCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCc---EEEccCC-cccccCcccccCCCCCc-EEEcc
Q 040468 198 QLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLV---DIIMPNN-NLEGLIPIEFCQLRFLR-ILDLS 272 (543)
Q Consensus 198 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~---~L~l~~~-~~~~~~~~~l~~l~~L~-~L~l~ 272 (543)
.+..+..+++|++|++++|.+.. .|. +..+++|+ .+++++| .+....+..|..+++|+ .|+++
T Consensus 97 ----------~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 97 ----------DPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164 (239)
T ss_dssp ----------CTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECC
T ss_pred ----------CHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcC
Confidence 22233334444444444444332 222 33344443 5555554 44444333444455555 55555
Q ss_pred CCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccc-cccccCccCCCC-CCCCEEEccCcccccc
Q 040468 273 NNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNC-LHGSIPNRIDRL-PQLSYLLLANNYIEGE 350 (543)
Q Consensus 273 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~~~-~~L~~L~l~~n~i~~~ 350 (543)
+|.+...... .+.. ++|++|++++|+ ++...+..+..+ ++|+.|++++|+++ .
T Consensus 165 ~n~l~~i~~~-----------------------~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~ 219 (239)
T 2xwt_C 165 NNGFTSVQGY-----------------------AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-A 219 (239)
T ss_dssp SCCCCEECTT-----------------------TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-C
T ss_pred CCCCcccCHh-----------------------hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-c
Confidence 5444433222 2322 445555555552 443333444455 55555555555554 2
Q ss_pred cchhhhCCCCCCEEeCCCC
Q 040468 351 IPVQLCQLKEVQLIDLSHN 369 (543)
Q Consensus 351 ~~~~l~~l~~L~~L~l~~n 369 (543)
+|.. .+++|+.|+++++
T Consensus 220 l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 220 LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CCCT--TCTTCSEEECTTC
T ss_pred CChh--HhccCceeeccCc
Confidence 2221 3445555555544
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=6.7e-19 Score=169.06 Aligned_cols=192 Identities=22% Similarity=0.282 Sum_probs=95.6
Q ss_pred CCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCc
Q 040468 43 HQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLM 122 (543)
Q Consensus 43 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~ 122 (543)
.+++|++|+++++.+. .++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+. .++ .+.. +++|+
T Consensus 39 ~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~~~-l~~L~ 110 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIAG-LQSIK 110 (308)
T ss_dssp HHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGTT-CTTCC
T ss_pred HcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hhcC-CCCCC
Confidence 4555666666665554 3332 3555666666666665543333 555566666666666555 332 2222 55566
Q ss_pred EEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCC
Q 040468 123 EFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGN 202 (543)
Q Consensus 123 ~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~ 202 (543)
+|++++|.+++. + .+..+++|++|++++|.+. .++. +..+++|++|++++|.+.+..+ +..+++|+.|++++|
T Consensus 111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQIT-NISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN 183 (308)
T ss_dssp EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccC-cCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCC
Confidence 666666555532 2 2555555555555555555 2322 3335555555555555543222 444555555555555
Q ss_pred ccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCccc
Q 040468 203 NFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLE 253 (543)
Q Consensus 203 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 253 (543)
.+.+..+ +..+++|+.|++++|.+.... .+..+++|+.|++++|.+.
T Consensus 184 ~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 184 KISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred ccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 5442211 444455555555555444222 1444445555555544443
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=1.3e-18 Score=167.01 Aligned_cols=207 Identities=23% Similarity=0.314 Sum_probs=139.4
Q ss_pred eccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCc
Q 040468 51 NLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNA 130 (543)
Q Consensus 51 ~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~ 130 (543)
.+....+++.+. ...+++|++|+++++.+... + ++..+++|++|++++|.+. .++. +. .+++|++|++++|.
T Consensus 25 ~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~-~~~~-~~-~l~~L~~L~L~~n~ 96 (308)
T 1h6u_A 25 AAGKSNVTDTVT---QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQIT-DLAP-LK-NLTKITELELSGNP 96 (308)
T ss_dssp HTTCSSTTSEEC---HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG-GT-TCCSCCEEECCSCC
T ss_pred HhCCCCcCceec---HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCC-CChh-Hc-cCCCCCEEEccCCc
Confidence 444554443333 24567888888888877543 3 5777888888888888877 4554 43 37888888888888
Q ss_pred CccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCch
Q 040468 131 FNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPE 210 (543)
Q Consensus 131 i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 210 (543)
+++ + ..+..+++|++|++++|.+. .++. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+... +.
T Consensus 97 l~~-~-~~~~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~ 168 (308)
T 1h6u_A 97 LKN-V-SAIAGLQSIKTLDLTSTQIT-DVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP 168 (308)
T ss_dssp CSC-C-GGGTTCTTCCEEECTTSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG
T ss_pred CCC-c-hhhcCCCCCCEEECCCCCCC-Cchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh
Confidence 774 2 36777888888888888877 4443 4557778888888877765432 66677777777777777643 22
Q ss_pred hhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCcc
Q 040468 211 SLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFG 278 (543)
Q Consensus 211 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 278 (543)
+..+++|+.|++++|.+....+ +..+++|+.|++++|.+.+.. .+..+++|+.|++++|.+..
T Consensus 169 -l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 169 -LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp -GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred -hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 6667777777777777764332 666777777777777766543 25666677777777766653
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.80 E-value=1.1e-18 Score=162.44 Aligned_cols=177 Identities=24% Similarity=0.234 Sum_probs=92.1
Q ss_pred eeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcC
Q 040468 23 LTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVS 102 (543)
Q Consensus 23 L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls 102 (543)
.++++++++.++ .+|..+. +++++|++++|.+.+..+. .+.++++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDA-TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHh-HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 455566655555 3333322 4556666666655533222 23555666666666665555555555556666666666
Q ss_pred CCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCC
Q 040468 103 NNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQG 182 (543)
Q Consensus 103 ~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 182 (543)
+|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+..
T Consensus 92 ~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 92 NNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp TSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC-ccCHHHcCcCcCCCEEECCCCcCCc
Confidence 66555 444444333555556666555555433344455555555555555555 4444334445555555555555554
Q ss_pred cCcccccCCCCcCEEeCCCCccC
Q 040468 183 HIFSKKFSLTNLMTLQLDGNNFS 205 (543)
Q Consensus 183 ~~~~~l~~l~~L~~L~l~~~~~~ 205 (543)
..+..+..+++|+.|++.+|.+.
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCHHHHhCCCCCCEEEeeCCcee
Confidence 44444444555555555555443
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=7.6e-19 Score=158.65 Aligned_cols=109 Identities=25% Similarity=0.260 Sum_probs=50.8
Q ss_pred CCCcEEEccCCcCccCCCCCC-CcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEc
Q 040468 264 RFLRILDLSNNTIFGTLPSCF-SPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLL 342 (543)
Q Consensus 264 ~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l 342 (543)
+++++|++++|.+.+..+..+ .+++|+.|++++|.+++.....+..+++|++|++++|+++...+..+..+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 345555555555544333322 2444555555555544444334444455555555555544333333444455555555
Q ss_pred cCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468 343 ANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372 (543)
Q Consensus 343 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 372 (543)
++|++++..+..+..+++|++|++++|.+.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence 555444333333444445555555554443
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=2.8e-18 Score=168.01 Aligned_cols=203 Identities=18% Similarity=0.144 Sum_probs=120.3
Q ss_pred CEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcE-EEc
Q 040468 48 KNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLME-FNL 126 (543)
Q Consensus 48 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~-L~L 126 (543)
++++-++++++ .+|..+ .+++++|+|++|+++...+.+|.++++|++|+|++|.+...++...+..++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45566666665 666654 3567777777777766666667777777777777777654566666655666654 445
Q ss_pred CCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccC-CcCCCcCcccccCCC-CcCEEeCCCCcc
Q 040468 127 SRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSN-NSLQGHIFSKKFSLT-NLMTLQLDGNNF 204 (543)
Q Consensus 127 ~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~l~~l~-~L~~L~l~~~~~ 204 (543)
.+|+++...+..|..+++|++|++++|.+. .++...+....++..+++.+ +.+.......+..+. .++.|++++|++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 556776555667777777777777777776 44443333344556666654 344433333444432 466666666666
Q ss_pred CccCchhhhcCCCCCEEEccC-CcCCCcccccccCCCCCcEEEccCCcccccC
Q 040468 205 SGEIPESLSKCRRLGGLYLSD-NHLSGEIPRWLGNLSFLVDIIMPNNNLEGLI 256 (543)
Q Consensus 205 ~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 256 (543)
+...+..+ ...+|+.+++.+ |.+....+..|..+++|+.|++++|.++...
T Consensus 167 ~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp 218 (350)
T 4ay9_X 167 QEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 218 (350)
T ss_dssp CEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC
T ss_pred cCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC
Confidence 53322222 334566666653 3444333344556666666666666665443
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=8.3e-18 Score=164.67 Aligned_cols=243 Identities=20% Similarity=0.175 Sum_probs=155.7
Q ss_pred CEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCE-EEc
Q 040468 97 ATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEI-LAL 175 (543)
Q Consensus 97 ~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~-L~l 175 (543)
++++.+++.++ ++|..+. +++++|+|++|+++...+.+|.++++|++|+|++|.+.+.++...+..++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 56778888887 7887663 578888888888885555678888888888888888765677666666666654 444
Q ss_pred cCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCccccc
Q 040468 176 SNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGL 255 (543)
Q Consensus 176 ~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 255 (543)
..|++....+..+..+++|++|++++|.+....+..+....++..+++.++ +.+...
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~-----------------------~~i~~l 144 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-----------------------INIHTI 144 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC-----------------------TTCCEE
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc-----------------------cccccc
Confidence 556666555555556666666666666555333333333333444443321 233333
Q ss_pred CcccccCC-CCCcEEEccCCcCccCCCCCCCcccccEEEcCC-CccccccCCCCCCCCCccEEEccccccccccCccCCC
Q 040468 256 IPIEFCQL-RFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSK-NKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDR 333 (543)
Q Consensus 256 ~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~ 333 (543)
.+..+..+ ..++.|++++|.++......+...+++++++.+ |.++......|..+++|++|++++|+++. +|. ..
T Consensus 145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~--~~ 221 (350)
T 4ay9_X 145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPS--YG 221 (350)
T ss_dssp CTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-CCS--SS
T ss_pred cccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-cCh--hh
Confidence 33333333 246677777777776666666667777887764 56666666677888888888888888883 443 23
Q ss_pred CCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCc
Q 040468 334 LPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNN 370 (543)
Q Consensus 334 ~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~ 370 (543)
+.+|+.|.+.++.-...+|. +..+++|+.+++.++.
T Consensus 222 ~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 222 LENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYPS 257 (350)
T ss_dssp CTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCHH
T ss_pred hccchHhhhccCCCcCcCCC-chhCcChhhCcCCCCc
Confidence 45566777666644445663 6778888888887543
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=5.1e-18 Score=174.81 Aligned_cols=197 Identities=23% Similarity=0.269 Sum_probs=152.8
Q ss_pred CCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcC
Q 040468 216 RRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLS 295 (543)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 295 (543)
.+++.|++++|.+.. +|..+ .++|+.|++++|.+... | ..+++|+.|++++|.+.+. +. + ..+|+.|+++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~~i-p~-l-~~~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISL-P---ELPASLEYLDACDNRLSTL-PE-L-PASLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCC-CC-C-CTTCCEEECC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCccc-c---cccCCCCEEEccCCCCCCc-ch-h-hcCCCEEECC
Confidence 389999999999885 55544 37899999999998844 4 4568899999999998874 44 3 2389999999
Q ss_pred CCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccC
Q 040468 296 KNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHI 375 (543)
Q Consensus 296 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 375 (543)
+|.+++.+. .+++|++|++++|.+++ +|. .+++|+.|++++|++++ +|. |. ++|++|++++|.+. .+
T Consensus 129 ~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTMLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCCCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 999987433 57899999999999984 554 57889999999999985 666 55 89999999999886 45
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCC
Q 040468 376 PPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNM 455 (543)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (543)
|. +.. .+
T Consensus 196 p~-~~~-~L----------------------------------------------------------------------- 202 (571)
T 3cvr_A 196 PA-VPV-RN----------------------------------------------------------------------- 202 (571)
T ss_dssp CC-CC---------------------------------------------------------------------------
T ss_pred hh-HHH-hh-----------------------------------------------------------------------
Confidence 54 221 00
Q ss_pred cccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhccCC
Q 040468 456 SYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQ 514 (543)
Q Consensus 456 ~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~ 514 (543)
....+.|+.|+|++|+++ .+|..+..+++|+.|+|++|++++.+|..|..+++
T Consensus 203 -----~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 203 -----HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp ----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred -----hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 000345699999999999 78988888999999999999999888888877654
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.76 E-value=1e-17 Score=151.14 Aligned_cols=131 Identities=24% Similarity=0.296 Sum_probs=61.8
Q ss_pred CCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEE
Q 040468 45 HDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEF 124 (543)
Q Consensus 45 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L 124 (543)
++|++|++++|.++ .++...+..+++|++|++++|++.+..+..+..+++|++|++++|.++ .++...+..+++|++|
T Consensus 28 ~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 28 AQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKEL 105 (208)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEE
Confidence 45555555555554 333333345555555555555554444444455555555555555554 3333333334555555
Q ss_pred EcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCC
Q 040468 125 NLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNN 178 (543)
Q Consensus 125 ~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n 178 (543)
++++|.+++..+..+.++++|++|++++|.+. .++...+..+++|++|++++|
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSC
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCC
Confidence 55555554333333444445555555544444 333333333444444444444
No 100
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=1.2e-17 Score=164.13 Aligned_cols=127 Identities=26% Similarity=0.237 Sum_probs=74.1
Q ss_pred cEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCC--CcccccEEEcCCCccccccCCCCCCCCCccEEEccc
Q 040468 243 VDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCF--SPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSY 320 (543)
Q Consensus 243 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 320 (543)
+.++++++.+... |..+. +.++.|++++|.+.+..+..+ .+++|+.|++++|.+++..+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~i-P~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNV-PQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSC-CSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCcc-CccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 4566666665543 33332 345666666666665554443 356666666666666655555566666666666666
Q ss_pred cccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468 321 NCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372 (543)
Q Consensus 321 ~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 372 (543)
|+++...+..|..+++|+.|++++|+++...+..|..+++|+.|++++|.+.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence 6666444445566666666666666666555555666666666666666554
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=1.9e-17 Score=150.47 Aligned_cols=104 Identities=23% Similarity=0.258 Sum_probs=56.0
Q ss_pred cEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcc
Q 040468 267 RILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNY 346 (543)
Q Consensus 267 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~ 346 (543)
+.++.+++.+...+... ++.++.|++++|.+++..+..|..+++|++|++++|.++...+..|..+++|+.|++++|+
T Consensus 14 ~~v~c~~~~l~~iP~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 34555555555333222 2455666666665555555455555556666666665554445555555555555555555
Q ss_pred cccccchhhhCCCCCCEEeCCCCccc
Q 040468 347 IEGEIPVQLCQLKEVQLIDLSHNNLS 372 (543)
Q Consensus 347 i~~~~~~~l~~l~~L~~L~l~~n~~~ 372 (543)
++...+..|..+++|++|++++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~ 117 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKIN 117 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCC
Confidence 55333334455555555555555554
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=9e-18 Score=159.70 Aligned_cols=127 Identities=25% Similarity=0.314 Sum_probs=68.5
Q ss_pred cCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEE
Q 040468 237 GNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTL 316 (543)
Q Consensus 237 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 316 (543)
..+++|+.+++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++.. .+..+++|++|
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L 117 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS--SLKDLKKLKSL 117 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG--GGTTCTTCCEE
T ss_pred hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh--hhccCCCCCEE
Confidence 4456666777766666544 235556666666666666654333 333555555555555554422 24455555555
Q ss_pred EccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468 317 DLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372 (543)
Q Consensus 317 ~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 372 (543)
++++|++++. ..+..+++|+.|++++|++++. ..+..+++|+.|++++|.+.
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence 5555555532 2345555555555555555532 33455555555555555543
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=3.1e-17 Score=150.18 Aligned_cols=155 Identities=25% Similarity=0.259 Sum_probs=94.0
Q ss_pred ccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCC
Q 040468 289 IEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSH 368 (543)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~ 368 (543)
.+.++.+++.++..+.. +. ++|++|++++|.+++..+..+..+++|+.|++++|++....+..|..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~-~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAG-IP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSC-CC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCC-CC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 44555555555433321 21 5666666666666655566666666677777777666544444556666777777777
Q ss_pred CcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccce
Q 040468 369 NNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETI 448 (543)
Q Consensus 369 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (543)
|.+.+..+..+..
T Consensus 98 N~l~~l~~~~~~~------------------------------------------------------------------- 110 (229)
T 3e6j_A 98 NQLTVLPSAVFDR------------------------------------------------------------------- 110 (229)
T ss_dssp SCCCCCCTTTTTT-------------------------------------------------------------------
T ss_pred CcCCccChhHhCc-------------------------------------------------------------------
Confidence 6665322211111
Q ss_pred eeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCccc
Q 040468 449 QFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK 528 (543)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~ 528 (543)
+++|++|++++|+++ .+|..+..+++|++|+|++|.+++..+..|..+++|+.|++++|++.+.
T Consensus 111 ---------------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 111 ---------------LVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp ---------------CTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred ---------------chhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 456667777777776 6666667777777777777777655555566677777777777776644
Q ss_pred C
Q 040468 529 I 529 (543)
Q Consensus 529 ~ 529 (543)
.
T Consensus 175 c 175 (229)
T 3e6j_A 175 C 175 (229)
T ss_dssp B
T ss_pred c
Confidence 3
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=1.7e-17 Score=150.76 Aligned_cols=110 Identities=16% Similarity=0.206 Sum_probs=70.6
Q ss_pred cEEEccCCcCccCCCCCCCcccccEEEcCCCcccccc-CCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCc
Q 040468 267 RILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRL-ESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANN 345 (543)
Q Consensus 267 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n 345 (543)
+.++++++.++..+... ++.++.|++++|.+++.. ...|..+++|++|++++|.+++..+..|..+++|+.|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 46777777666543322 345667777777776653 234566677777777777777555556777777777777777
Q ss_pred ccccccchhhhCCCCCCEEeCCCCcccccCCCC
Q 040468 346 YIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPC 378 (543)
Q Consensus 346 ~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 378 (543)
++++..+..|..+++|++|++++|.+.+..|..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 124 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDS 124 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTS
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhH
Confidence 776555556667777777777777765443433
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=1.6e-17 Score=148.51 Aligned_cols=151 Identities=19% Similarity=0.240 Sum_probs=92.5
Q ss_pred cccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEe
Q 040468 286 PAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLID 365 (543)
Q Consensus 286 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 365 (543)
+++|+.|++++|.++... .+..+++|++|++++|.++. +..+..+++|+.|++++|++++..+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 345555555555554322 34555666666666665542 23566666677777777666655556666667777777
Q ss_pred CCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCc
Q 040468 366 LSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKE 445 (543)
Q Consensus 366 l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (543)
+++|.+.+..+..+..
T Consensus 119 Ls~n~i~~~~~~~l~~---------------------------------------------------------------- 134 (197)
T 4ezg_A 119 ISHSAHDDSILTKINT---------------------------------------------------------------- 134 (197)
T ss_dssp CCSSBCBGGGHHHHTT----------------------------------------------------------------
T ss_pred ecCCccCcHhHHHHhh----------------------------------------------------------------
Confidence 7776665433322221
Q ss_pred cceeeeccCCcccccccccCceeEEEcccCc-cccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCc
Q 040468 446 ETIQFTTKNMSYYYQGRILTSMFGIDLSCNK-LTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL 524 (543)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~ 524 (543)
+++|++|++++|+ ++ .+| .+..+++|++|++++|.+++ ++ .+..+++|+.|++++|+
T Consensus 135 ------------------l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 135 ------------------LPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ------------------CSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred ------------------CCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 4567777777776 55 444 57777888888888888774 33 67778888888888887
Q ss_pred Cc
Q 040468 525 LH 526 (543)
Q Consensus 525 i~ 526 (543)
|.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 75
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.72 E-value=1.1e-16 Score=164.94 Aligned_cols=134 Identities=25% Similarity=0.310 Sum_probs=61.7
Q ss_pred CcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEcc
Q 040468 193 NLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLS 272 (543)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 272 (543)
+++.|+++++.+++ +|..+ .++|++|++++|.+. .+| ..+++|+.|++++|.+.+ +|. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 45555555555443 33322 244555555555554 223 234455555555555544 222 322 45555555
Q ss_pred CCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccc
Q 040468 273 NNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIE 348 (543)
Q Consensus 273 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~ 348 (543)
+|.+.+... .+++|+.|++++|.+++... .+++|++|++++|.+++ +|. +. ++|+.|++++|+++
T Consensus 129 ~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 129 NNQLTMLPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp SSCCSCCCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred CCcCCCCCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence 555544222 34455555555555543221 23455555555555552 333 33 45555555555554
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=5.9e-17 Score=168.80 Aligned_cols=145 Identities=24% Similarity=0.290 Sum_probs=96.7
Q ss_pred CCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCC
Q 040468 218 LGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKN 297 (543)
Q Consensus 218 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 297 (543)
+..+.+..+.+....+ +..+++|+.|++++|.+... + .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC
Confidence 3334444444443222 45677788888888877654 2 46777888888888887775443 444777777777777
Q ss_pred ccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccc
Q 040468 298 KIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSG 373 (543)
Q Consensus 298 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~ 373 (543)
.+.+.. .+..+++|++|++++|.+.+ + ..+..+++|+.|+|++|++++. ..+..+++|+.|+|++|.+.+
T Consensus 98 ~l~~l~--~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 98 KIKDLS--SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp CCCCCT--TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred CCCCCh--hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence 776532 46677777777777777764 2 3466777777777777777643 456777777777777777653
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.70 E-value=2e-16 Score=143.77 Aligned_cols=151 Identities=18% Similarity=0.177 Sum_probs=94.7
Q ss_pred eEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCC
Q 040468 24 TSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSN 103 (543)
Q Consensus 24 ~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~ 103 (543)
+.+++++++++ .+|..+. +++++|++++|.+. .++...+..+++|++|++++|++.+..+.+|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 45666666665 3443332 56777777777766 33433346667777777777777666666677777777777777
Q ss_pred CccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcC
Q 040468 104 NFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSL 180 (543)
Q Consensus 104 ~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 180 (543)
|.++ .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|+.|++++|.+
T Consensus 90 N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 90 NKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCE
T ss_pred CcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC-EECHHHHhCCCCCCEEEeCCCCc
Confidence 7766 666665555667777777777766555666666666666666666666 44444444455566666665554
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.69 E-value=4.8e-16 Score=147.75 Aligned_cols=171 Identities=25% Similarity=0.300 Sum_probs=91.5
Q ss_pred hcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCC
Q 040468 67 ENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLA 146 (543)
Q Consensus 67 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~ 146 (543)
..+++|++|+++++.+... ..+..+++|++|++++|.+. .++. +.. +++|++|++++|.+++ ...+..+++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~-~~~~-l~~-l~~L~~L~l~~n~l~~--~~~l~~l~~L~ 115 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIKP-LAN-LKNLGWLFLDENKVKD--LSSLKDLKKLK 115 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-GTT-CTTCCEEECCSSCCCC--GGGGTTCTTCC
T ss_pred hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccC-CCcc-ccc-CCCCCEEECCCCcCCC--ChhhccCCCCC
Confidence 4456677777777666433 23566667777777776666 3333 333 6666777776666653 23366666666
Q ss_pred EEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCC
Q 040468 147 RLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDN 226 (543)
Q Consensus 147 ~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 226 (543)
+|++++|.+. .++ . +..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|
T Consensus 116 ~L~L~~n~i~-~~~-~-l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 116 SLSLEHNGIS-DIN-G-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188 (291)
T ss_dssp EEECTTSCCC-CCG-G-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred EEECCCCcCC-CCh-h-hcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence 6666666665 332 1 23355666666666655533 344455555555555555543222 444555555555555
Q ss_pred cCCCcccccccCCCCCcEEEccCCccc
Q 040468 227 HLSGEIPRWLGNLSFLVDIIMPNNNLE 253 (543)
Q Consensus 227 ~~~~~~~~~l~~~~~L~~L~l~~~~~~ 253 (543)
.+.. .+ .+..+++|+.|++++|.+.
T Consensus 189 ~i~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 189 HISD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred cCCC-Ch-hhccCCCCCEEECcCCccc
Confidence 4442 11 2444444444444444443
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.69 E-value=4.2e-16 Score=141.63 Aligned_cols=152 Identities=15% Similarity=0.139 Sum_probs=86.4
Q ss_pred eEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCC
Q 040468 24 TSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSN 103 (543)
Q Consensus 24 ~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~ 103 (543)
++++++++.++. +|..+ .+.+++|++++|.+++..+...+..+++|++|++++|++.+..+.+|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 456666666653 34332 234566666666666444444456666666666666666655555666666666666666
Q ss_pred CccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcC
Q 040468 104 NFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSL 180 (543)
Q Consensus 104 ~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 180 (543)
|.++ .++...+..+++|++|++++|.+++..+..+.++++|++|++++|.+. .++...+..+++|+.|++++|.+
T Consensus 91 N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 91 NRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp SCCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCC-CBCTTTTTTCTTCCEEECCSCCE
T ss_pred CccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCC-EECHHHhcCCCCCCEEEecCcCC
Confidence 6665 444444444666666666666666555555666666666666666555 33223333355555555555543
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.68 E-value=1.5e-16 Score=156.29 Aligned_cols=175 Identities=26% Similarity=0.212 Sum_probs=106.1
Q ss_pred eEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhh-cCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcC
Q 040468 24 TSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVE-NNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVS 102 (543)
Q Consensus 24 ~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls 102 (543)
+.++++++++. .+|..+ .+.+++|+|++|.+++ ++...+. .+++|++|+|++|++.+..+.+|..+++|++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~--~~~l~~L~Ls~N~l~~-l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL--PSYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSC--CTTCSEEECCSSCCCE-ECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccC--CCCCCEEECCCCCCCc-cChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 46666666666 344333 2456777777777763 3333334 66777777777777766666667777777777777
Q ss_pred CCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhh---hCCCCCCEEEccCCc
Q 040468 103 NNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMA---TGCFSLEILALSNNS 179 (543)
Q Consensus 103 ~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~---~~~~~L~~L~l~~n~ 179 (543)
+|.+. .++...+..+++|++|++++|.+....+..|.++++|++|++++|.+. .++...+ ..+++|+.|++++|.
T Consensus 97 ~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 97 SNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp SSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSC
T ss_pred CCcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCC
Confidence 77766 555544444677777777777776555666677777777777777766 5555554 335566666666666
Q ss_pred CCCcCcccccCCCC--cCEEeCCCCcc
Q 040468 180 LQGHIFSKKFSLTN--LMTLQLDGNNF 204 (543)
Q Consensus 180 ~~~~~~~~l~~l~~--L~~L~l~~~~~ 204 (543)
+.......+..++. ++.|++.+|.+
T Consensus 175 l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 175 LKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred CCccCHHHhhhccHhhcceEEecCCCc
Confidence 55444444444443 24455555544
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=4.6e-16 Score=138.93 Aligned_cols=152 Identities=18% Similarity=0.241 Sum_probs=72.8
Q ss_pred CCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCc
Q 040468 43 HQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLM 122 (543)
Q Consensus 43 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~ 122 (543)
.+++|++|+++++.+. .++. +..+++|++|++++|.+.. +..+..+++|++|++++|.+.+..+..+.. +++|+
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~ 115 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLTG--IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSG-LTSLT 115 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCTT--GGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTT-CTTCC
T ss_pred hcCCccEEeccCCCcc-ChHH--HhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcC-CCCCC
Confidence 4445555555555554 3332 3445555555555554321 123445555555555555554333333333 45555
Q ss_pred EEEcCCCcCccCCchhhcCCCCCCEEeccccc-ccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCC
Q 040468 123 EFNLSRNAFNGSIPSSFADMQMLARLDISYNQ-LTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDG 201 (543)
Q Consensus 123 ~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 201 (543)
+|++++|.+++..+..+..+++|++|++++|. +. .++ .+..+++|++|++++|.+.+.. .+..+++|+.|++.+
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFS 190 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECB
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeC
Confidence 55555555554444455555555555555554 33 333 1333555555555555554322 444555566666655
Q ss_pred CccC
Q 040468 202 NNFS 205 (543)
Q Consensus 202 ~~~~ 205 (543)
|++.
T Consensus 191 N~i~ 194 (197)
T 4ezg_A 191 QTIG 194 (197)
T ss_dssp C---
T ss_pred cccC
Confidence 5543
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.67 E-value=1.3e-15 Score=158.81 Aligned_cols=171 Identities=26% Similarity=0.313 Sum_probs=78.8
Q ss_pred cCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCE
Q 040468 68 NNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLAR 147 (543)
Q Consensus 68 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~ 147 (543)
.+++|+.|+++++.+... + .+..+++|++|+|++|.+. .++. +.. +++|++|+|++|.+.+ + ..+..+++|+.
T Consensus 41 ~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~-~~~~-l~~-l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~ 113 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP-LTN-LKNLGWLFLDENKIKD-L-SSLKDLKKLKS 113 (605)
T ss_dssp HHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCC-CCGG-GGG-CTTCCEEECCSSCCCC-C-TTSTTCTTCCE
T ss_pred cCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCC-CChh-hcc-CCCCCEEECcCCCCCC-C-hhhccCCCCCE
Confidence 344444444444444222 1 2444445555555554444 2222 222 4455555555554442 1 23444455555
Q ss_pred EecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCc
Q 040468 148 LDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNH 227 (543)
Q Consensus 148 L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 227 (543)
|++++|.+. .++ . +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 114 L~Ls~N~l~-~l~-~-l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 114 LSLEHNGIS-DIN-G-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EECTTSCCC-CCG-G-GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEecCCCCC-CCc-c-ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 555555544 222 1 22345555555555554432 334445555555555555543322 4455555555555555
Q ss_pred CCCcccccccCCCCCcEEEccCCcccc
Q 040468 228 LSGEIPRWLGNLSFLVDIIMPNNNLEG 254 (543)
Q Consensus 228 ~~~~~~~~l~~~~~L~~L~l~~~~~~~ 254 (543)
+... ..+..+++|+.|++++|.+..
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CCCC--hHHccCCCCCEEEccCCcCcC
Confidence 5422 234555555555555555543
No 114
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=1e-16 Score=155.49 Aligned_cols=101 Identities=19% Similarity=0.163 Sum_probs=64.6
Q ss_pred CCCCcEEEccCCcCccCCCCCCC-cccccEEEcCCCccccccCCCCCCCCCcc-EEEccccccccccCccCCCCCCCCEE
Q 040468 263 LRFLRILDLSNNTIFGTLPSCFS-PAYIEQVHLSKNKIEGRLESVIPDSPNLV-TLDLSYNCLHGSIPNRIDRLPQLSYL 340 (543)
Q Consensus 263 l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~i~~~~~~~l~~~~~L~~L 340 (543)
+++|+.+++++|.+.......|. +++|+++++.++ ++......|.++++|+ .+++.+ .++...+.+|.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 45555666655555544444443 556666666555 5555566677777777 777776 5654556677777777777
Q ss_pred EccCcccccccchhhhCCCCCCEEe
Q 040468 341 LLANNYIEGEIPVQLCQLKEVQLID 365 (543)
Q Consensus 341 ~l~~n~i~~~~~~~l~~l~~L~~L~ 365 (543)
++.+|++....+.+|.++++|+.+.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 7777777656666777777777764
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.66 E-value=1.7e-15 Score=138.48 Aligned_cols=131 Identities=23% Similarity=0.233 Sum_probs=57.6
Q ss_pred CCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEE
Q 040468 45 HDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEF 124 (543)
Q Consensus 45 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L 124 (543)
++|++|++++|.+++..+.. +..+++|++|++++|++....+..+..+++|++|++++|.++ .++...+..+++|++|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGV-FDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKEL 117 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCCEEEcCCCccCccCHHH-hhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeE
Confidence 44555555555544322222 244445555555555443333334444445555555544444 3333333334444444
Q ss_pred EcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCc
Q 040468 125 NLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNS 179 (543)
Q Consensus 125 ~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 179 (543)
++++|.++ .+|..+..+++|++|++++|.+. .++...+..+++|+.|++++|.
T Consensus 118 ~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 118 FMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp ECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSC
T ss_pred eccCCccc-ccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCC
Confidence 44444444 33444444444444444444444 3333333333444444444443
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=4.9e-17 Score=152.07 Aligned_cols=123 Identities=22% Similarity=0.282 Sum_probs=81.2
Q ss_pred CCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEcc
Q 040468 240 SFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLS 319 (543)
Q Consensus 240 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 319 (543)
.++..++++++.+.+.. .+..+++|+.|++++|.+... +.+..+++|+.|++++|.+++..+ +..+++|++|+++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-hHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 34555666666666442 455677788888888777643 344446777777777777776544 6677777777777
Q ss_pred ccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468 320 YNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372 (543)
Q Consensus 320 ~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 372 (543)
+|++++ ++. +.. ++|+.|++++|++++ ++ .+..+++|+.|++++|.+.
T Consensus 94 ~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 94 RNRLKN-LNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLK 141 (263)
T ss_dssp SSCCSC-CTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCC
T ss_pred CCccCC-cCc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCC
Confidence 777774 332 222 677777777777764 33 4667777777777777765
No 117
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.65 E-value=6.4e-15 Score=146.58 Aligned_cols=335 Identities=13% Similarity=0.112 Sum_probs=198.3
Q ss_pred ccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCch
Q 040468 82 LFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPE 161 (543)
Q Consensus 82 ~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~ 161 (543)
++.+...+|.+|.+|+.+.+..+ ++ .+....+..|++|+.+++..+ ++.....+|.++..|+.+.+..+ +. .+..
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~ 133 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGV 133 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecc
Confidence 44555667777777887777643 55 566666666777777777654 33233445666666665544432 12 2233
Q ss_pred HhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCC
Q 040468 162 RMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSF 241 (543)
Q Consensus 162 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 241 (543)
..|..+...+ ...... .......+|.++.+|+.+.+.++.. ......|..+.+
T Consensus 134 ~aF~~~~~~~-------------------------~~~~~~-~~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~ 186 (394)
T 4fs7_A 134 EAFKGCDFKE-------------------------ITIPEG-VTVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGK 186 (394)
T ss_dssp TTTTTCCCSE-------------------------EECCTT-CCEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTT
T ss_pred eeeecccccc-------------------------cccCcc-ccccchhhhcccCCCcEEecCCccc-eeccccccCCCC
Confidence 3333222111 111111 1112234455566666666654322 133445566666
Q ss_pred CcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEcccc
Q 040468 242 LVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYN 321 (543)
Q Consensus 242 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 321 (543)
|+.+.+..+ +......++..+..|+.+.+..+... .....+....|+.+.+... ++......+..+..++.+.+..+
T Consensus 187 L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 187 LKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN 263 (394)
T ss_dssp CCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT
T ss_pred ceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCC
Confidence 666666544 33344455666666766666554332 2333444567777777543 33445566777888888888776
Q ss_pred ccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCC
Q 040468 322 CLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGR 401 (543)
Q Consensus 322 ~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 401 (543)
... .....+..+..++.+......+. ...|..+.+|+.+.+..+ +......+|..
T Consensus 264 ~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~-------------------- 318 (394)
T 4fs7_A 264 KLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFES-------------------- 318 (394)
T ss_dssp TCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTT--------------------
T ss_pred cce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcC--------------------
Confidence 544 55667778888888777665432 345777888888877654 22111222221
Q ss_pred CCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCcccccc
Q 040468 402 ASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEI 481 (543)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 481 (543)
+.+|++++|..+ ++...
T Consensus 319 --------------------------------------------------------------c~~L~~i~lp~~-v~~I~ 335 (394)
T 4fs7_A 319 --------------------------------------------------------------CTSLVSIDLPYL-VEEIG 335 (394)
T ss_dssp --------------------------------------------------------------CTTCCEECCCTT-CCEEC
T ss_pred --------------------------------------------------------------CCCCCEEEeCCc-ccEEh
Confidence 567888888644 66344
Q ss_pred ChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcccCCccccccCcCCcC
Q 040468 482 PTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVF 542 (543)
Q Consensus 482 ~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l 542 (543)
...|.+|++|+.++|..+ ++.....+|.+|++|+.+++.++ +. .+...|..+++|+.+
T Consensus 336 ~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 336 KRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred HHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 577888999999999776 66677778999999999999765 33 334668888888765
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=6.1e-16 Score=150.05 Aligned_cols=285 Identities=13% Similarity=0.059 Sum_probs=143.4
Q ss_pred CCCCcEEEccCCcccccCCCCCcC-CCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcC------
Q 040468 69 NTNLETLLLANNSLFGSFRMPIHS-HQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFAD------ 141 (543)
Q Consensus 69 l~~L~~L~L~~~~~~~~~~~~~~~-~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~------ 141 (543)
+.+++.|.+++. +.......+.. +++|++|+|++|.+. .....-. .++.++.+.+..+.+ ....|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~-~~~~~~~-~~~~~~~~~~~~~~I---~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIK-MYSGKAG-TYPNGKFYIYMANFV---PAYAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEEC-CEEESSS-SSGGGCCEEECTTEE---CTTTTEEEETTEE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeE-EecCccc-ccccccccccccccc---CHHHhcccccccc
Confidence 456777777654 21111112223 677777777777765 1111100 122233444444432 2234555
Q ss_pred --CCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCC
Q 040468 142 --MQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLG 219 (543)
Q Consensus 142 --l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 219 (543)
+++|+++++.+ .+. .++...|.+|++|+.+++..|.+.......+..+.++..+........
T Consensus 98 ~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~-------------- 161 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY-------------- 161 (329)
T ss_dssp EECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHH--------------
T ss_pred cccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhh--------------
Confidence 67777777766 555 666666666777777777776665555555555555555544332110
Q ss_pred EEEccCCcCCCcccccccCCCCCc-EEEccCCcc-cccCcccccCCCCCcEEEccCCcCccCCCCCC-CcccccEEEcCC
Q 040468 220 GLYLSDNHLSGEIPRWLGNLSFLV-DIIMPNNNL-EGLIPIEFCQLRFLRILDLSNNTIFGTLPSCF-SPAYIEQVHLSK 296 (543)
Q Consensus 220 ~L~l~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~ 296 (543)
..........|..+..|+ .+.+..... .......-....++..+.+.+.-......... .+++|+.+++.+
T Consensus 162 ------~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~ 235 (329)
T 3sb4_A 162 ------RFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISK 235 (329)
T ss_dssp ------HTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTT
T ss_pred ------hccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCC
Confidence 000001112222333333 222221110 00000000122334444444331110000000 146677777777
Q ss_pred CccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCC-EEEccCcccccccchhhhCCCCCCEEeCCCCcccccC
Q 040468 297 NKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLS-YLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHI 375 (543)
Q Consensus 297 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~-~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 375 (543)
|.++......|..+++|+.+++.+| ++.....+|.+|++|+ .+++.+ .++...+.+|.+|++|+.+++++|.+....
T Consensus 236 n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~ 313 (329)
T 3sb4_A 236 TNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLG 313 (329)
T ss_dssp BCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEEC
T ss_pred CCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccc
Confidence 7776666667777777777777776 5545556677777777 777766 555455666777777777777777666555
Q ss_pred CCCcccCC
Q 040468 376 PPCLVNTS 383 (543)
Q Consensus 376 ~~~~~~~~ 383 (543)
+.+|..++
T Consensus 314 ~~aF~~~~ 321 (329)
T 3sb4_A 314 DELFGNGV 321 (329)
T ss_dssp TTTTCTTC
T ss_pred hhhhcCCc
Confidence 55565543
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=2.6e-18 Score=177.96 Aligned_cols=63 Identities=21% Similarity=0.247 Sum_probs=36.0
Q ss_pred cCceeEEEcccCccccccChhhhcccccCeeeCcCCcccccc-ChhhhccCCCCeeeCCCCcCccc
Q 040468 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTI-PTTFSNLKQIESLDLSYNLLHGK 528 (543)
Q Consensus 464 ~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~-~~~~~~l~~L~~L~l~~n~i~~~ 528 (543)
+++|+.|+|++|+++ .+| .+..+++|++|+|++|.+++.. |..|..+++|+.|++++|++++.
T Consensus 485 l~~L~~L~Ls~N~l~-~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 485 LRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp CTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred CCCCCEEECCCCCCC-CCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 345555555555555 344 5555666666666666665444 55566666666666666666544
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.62 E-value=2.1e-15 Score=133.85 Aligned_cols=159 Identities=20% Similarity=0.228 Sum_probs=111.9
Q ss_pred cEEEcCCCccccccCCCCCCCCCccEEEccccccccccCc-cCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCC
Q 040468 290 EQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPN-RIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSH 368 (543)
Q Consensus 290 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~-~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~ 368 (543)
+.++++++.++..+. .+. +++++|++++|.++...+. .+..+++|+.|++++|++++..|..|.++++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~-~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR-DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCS-CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCcc-CCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 678888888865443 232 3888888888888855443 478888888888888888877788888888888888888
Q ss_pred CcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccce
Q 040468 369 NNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETI 448 (543)
Q Consensus 369 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (543)
|.+.+..+..+..
T Consensus 88 N~l~~~~~~~~~~------------------------------------------------------------------- 100 (192)
T 1w8a_A 88 NKIKEISNKMFLG------------------------------------------------------------------- 100 (192)
T ss_dssp CCCCEECSSSSTT-------------------------------------------------------------------
T ss_pred CcCCccCHHHhcC-------------------------------------------------------------------
Confidence 8887544433322
Q ss_pred eeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccCh-hhhccCCCCeeeCCCCcCcc
Q 040468 449 QFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPT-TFSNLKQIESLDLSYNLLHG 527 (543)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~-~~~~l~~L~~L~l~~n~i~~ 527 (543)
+++|++|+|++|++++..|..+..+++|++|++++|++.+..+. ++.. .++...+.++...+
T Consensus 101 ---------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~--~l~~~~~~~~~~~C 163 (192)
T 1w8a_A 101 ---------------LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLNGGAARC 163 (192)
T ss_dssp ---------------CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCSGGGCBB
T ss_pred ---------------CCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH--HHHHcCCCCCCCCC
Confidence 56788888888888877788888888888888888888765442 2211 13333445555555
Q ss_pred cCCccccc
Q 040468 528 KIPSQLTV 535 (543)
Q Consensus 528 ~~~~~~~~ 535 (543)
..|..+..
T Consensus 164 ~~P~~l~~ 171 (192)
T 1w8a_A 164 GAPSKVRD 171 (192)
T ss_dssp CSSTTTTT
T ss_pred CCChHHcC
Confidence 55555443
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=9e-16 Score=133.27 Aligned_cols=135 Identities=23% Similarity=0.254 Sum_probs=92.1
Q ss_pred CCccEEEccccccc-cccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCC
Q 040468 311 PNLVTLDLSYNCLH-GSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHD 389 (543)
Q Consensus 311 ~~L~~L~l~~~~i~-~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~ 389 (543)
++|++|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------- 93 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK-------- 93 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH--------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh--------
Confidence 56777777777766 45566666677777777777777643 55667777777777777765433322211
Q ss_pred CCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeE
Q 040468 390 EPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFG 469 (543)
Q Consensus 390 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 469 (543)
+++|++
T Consensus 94 --------------------------------------------------------------------------l~~L~~ 99 (168)
T 2ell_A 94 --------------------------------------------------------------------------LPNLTH 99 (168)
T ss_dssp --------------------------------------------------------------------------CTTCCE
T ss_pred --------------------------------------------------------------------------CCCCCE
Confidence 457777
Q ss_pred EEcccCccccccC--hhhhcccccCeeeCcCCccccccC---hhhhccCCCCeeeCCCCcCcccCCc
Q 040468 470 IDLSCNKLTGEIP--TQIGYLTKIHALNLSHNNLTGTIP---TTFSNLKQIESLDLSYNLLHGKIPS 531 (543)
Q Consensus 470 L~ls~n~l~~~~~--~~l~~l~~L~~L~ls~n~i~~~~~---~~~~~l~~L~~L~l~~n~i~~~~~~ 531 (543)
|++++|.++ .+| ..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+. .+|+
T Consensus 100 L~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 100 LNLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp EECBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred EeccCCccC-cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 777777777 333 667788888888888888885544 47788888888888888876 4444
No 122
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.61 E-value=5.7e-14 Score=139.07 Aligned_cols=218 Identities=11% Similarity=0.129 Sum_probs=118.5
Q ss_pred CCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEcc
Q 040468 145 LARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLS 224 (543)
Q Consensus 145 L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 224 (543)
|+.+.+.. .+. .+....|..|++|+.+++..|.+.......+. ..+|+.+.+..+ +......+|.++++|+.+.+.
T Consensus 159 L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 159 VQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred ceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 44444443 222 33333444444444444444444433323332 344444444422 333334445555555555554
Q ss_pred CCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCc-----cCCCCCC-CcccccEEEcCCCc
Q 040468 225 DNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIF-----GTLPSCF-SPAYIEQVHLSKNK 298 (543)
Q Consensus 225 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~~-~~~~L~~L~l~~~~ 298 (543)
.+ +......+|.. .+|+.+.+.+ .+......+|..+++|+.+.+.++.+. ......| .+++|+.+.+.+ .
T Consensus 235 ~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~ 310 (401)
T 4fdw_A 235 EN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-S 310 (401)
T ss_dssp TT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-T
T ss_pred CC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-c
Confidence 42 22223333444 4555555532 334344455566666666666555433 2223333 366777777763 4
Q ss_pred cccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCC-CCCEEeCCCCccc
Q 040468 299 IEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLK-EVQLIDLSHNNLS 372 (543)
Q Consensus 299 ~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~-~L~~L~l~~n~~~ 372 (543)
++......|.+|++|+.+.+..+ ++.....+|.++ +|+.+.+.+|.........|.+++ +++.|.+..+...
T Consensus 311 i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 311 IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 66566677888888888888554 554566778888 888888888877655556677764 6788888777654
No 123
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.61 E-value=6.2e-14 Score=139.41 Aligned_cols=312 Identities=13% Similarity=0.079 Sum_probs=204.8
Q ss_pred hhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCC
Q 040468 39 KFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYL 118 (543)
Q Consensus 39 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l 118 (543)
.++..|.+|+.+.+..+ ++ .+.+..|.+|.+|+.+++.++ +......+|.++..|+.+.+..+ +. .+....+..+
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~aF~~~ 139 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVEAFKGC 139 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTTTTTC
T ss_pred HHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecceeeecc
Confidence 45778888888888753 44 566666788888998888755 55556677888888888777644 33 3444455544
Q ss_pred CCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEe
Q 040468 119 PGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQ 198 (543)
Q Consensus 119 ~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 198 (543)
.. ....+... +......+|.++++|+.+.+..+. . .++...|..+.+|+.+.+..+ +.......+..+..|+.+.
T Consensus 140 ~~-~~~~~~~~-~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~ 214 (394)
T 4fs7_A 140 DF-KEITIPEG-VTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENME 214 (394)
T ss_dssp CC-SEEECCTT-CCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCC
T ss_pred cc-cccccCcc-ccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceee
Confidence 33 33333222 222334567788888888886543 3 566777777888888888765 3444455666777787777
Q ss_pred CCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCcc
Q 040468 199 LDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFG 278 (543)
Q Consensus 199 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 278 (543)
+..+... .. ........|+.+.+.... .......+..+..++.+.+..+.. ......+..+..++.+......+..
T Consensus 215 ~~~~~~~-i~-~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~~ 290 (394)
T 4fs7_A 215 FPNSLYY-LG-DFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVPE 290 (394)
T ss_dssp CCTTCCE-EC-TTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEECT
T ss_pred cCCCceE-ee-hhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceeecc
Confidence 6654322 21 223345677777776432 223445567788888888876533 3445567777778877776554321
Q ss_pred CCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCC
Q 040468 279 TLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQL 358 (543)
Q Consensus 279 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l 358 (543)
..+..+.+|+.+.+..+ ++.....+|..|.+|+.+++..+ ++.....+|.+|.+|+.+.+..+ ++.....+|.+|
T Consensus 291 --~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 365 (394)
T 4fs7_A 291 --KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGC 365 (394)
T ss_dssp --TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTC
T ss_pred --ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCC
Confidence 22334778888888654 55566677888888888888654 55455677888888888888766 555666778888
Q ss_pred CCCCEEeCCCC
Q 040468 359 KEVQLIDLSHN 369 (543)
Q Consensus 359 ~~L~~L~l~~n 369 (543)
.+|+.+++..+
T Consensus 366 ~~L~~i~lp~~ 376 (394)
T 4fs7_A 366 INLKKVELPKR 376 (394)
T ss_dssp TTCCEEEEEGG
T ss_pred CCCCEEEECCC
Confidence 88888888654
No 124
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.60 E-value=5.4e-14 Score=139.23 Aligned_cols=191 Identities=9% Similarity=0.051 Sum_probs=88.8
Q ss_pred CCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEE
Q 040468 167 CFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDII 246 (543)
Q Consensus 167 ~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 246 (543)
+..++.+.+..+ ++......|..+ +|+.+.+..+ +......+|.++ +|+.+.+.. .+......+|..|++|+.++
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 345555555442 232333444442 5666665544 443444445442 466665553 33333344555555555555
Q ss_pred ccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCC-cccccEEEcCCCccccccCCCCCCCCCccEEEcccccccc
Q 040468 247 MPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFS-PAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHG 325 (543)
Q Consensus 247 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 325 (543)
+..+.+......+|. +.+|+.+.+..+ +.......|. +++|+.+++..+ ++.....+|.. .+|+.+.+. +.++.
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~ 261 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTN 261 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCE
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccE
Confidence 555555544444443 345555555433 3333333332 445555555442 33333344444 445555552 22333
Q ss_pred ccCccCCCCCCCCEEEccCcccc-----cccchhhhCCCCCCEEeCC
Q 040468 326 SIPNRIDRLPQLSYLLLANNYIE-----GEIPVQLCQLKEVQLIDLS 367 (543)
Q Consensus 326 ~~~~~l~~~~~L~~L~l~~n~i~-----~~~~~~l~~l~~L~~L~l~ 367 (543)
....+|.+|++|+.+.+.++.+. ...+.+|.+|++|+.+++.
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence 33444555555555555544332 2333445555555555554
No 125
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.60 E-value=3.1e-15 Score=139.80 Aligned_cols=166 Identities=19% Similarity=0.221 Sum_probs=107.3
Q ss_pred cCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccC
Q 040468 194 LMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSN 273 (543)
Q Consensus 194 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 273 (543)
+..+++.++.+... + .+..+++|+.|++++|.+.. .+ .+..+++|+.|++++|.+.+..+ +..+++|+.|++++
T Consensus 21 l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 33444444444422 1 34455556666666665552 22 35556666666666666655433 56666666666666
Q ss_pred CcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccch
Q 040468 274 NTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPV 353 (543)
Q Consensus 274 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~ 353 (543)
|.+.+... ... ++|+.|++++|.+++. ..+..+++|++|++++|++++. + .+..+++|+.|++++|++++. .
T Consensus 95 N~l~~l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~ 166 (263)
T 1xeu_A 95 NRLKNLNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--G 166 (263)
T ss_dssp SCCSCCTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--T
T ss_pred CccCCcCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--H
Confidence 66664322 222 6777777777777654 2467788888888888888743 3 577888888888888888754 5
Q ss_pred hhhCCCCCCEEeCCCCcccc
Q 040468 354 QLCQLKEVQLIDLSHNNLSG 373 (543)
Q Consensus 354 ~l~~l~~L~~L~l~~n~~~~ 373 (543)
.+..+++|+.|++++|++.+
T Consensus 167 ~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TSTTCCCCCEEEEEEEEEEC
T ss_pred HhccCCCCCEEeCCCCcccC
Confidence 67788888888888888864
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=2.4e-15 Score=127.75 Aligned_cols=59 Identities=22% Similarity=0.223 Sum_probs=33.8
Q ss_pred cCceeEEEcccCccccc-cChhhhcccccCeeeCcCCccccccC---hhhhccCCCCeeeCCC
Q 040468 464 LTSMFGIDLSCNKLTGE-IPTQIGYLTKIHALNLSHNNLTGTIP---TTFSNLKQIESLDLSY 522 (543)
Q Consensus 464 ~~~L~~L~ls~n~l~~~-~~~~l~~l~~L~~L~ls~n~i~~~~~---~~~~~l~~L~~L~l~~ 522 (543)
+++|++|++++|++++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 87 l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 87 CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 34555555555555521 12556666666666666666664444 3566666666666653
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=1.4e-14 Score=128.43 Aligned_cols=79 Identities=22% Similarity=0.270 Sum_probs=44.1
Q ss_pred cEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCC
Q 040468 290 EQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHN 369 (543)
Q Consensus 290 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n 369 (543)
+.++++++.++..+.. +. ++|++|++++|.++ .+|..+..+++|+.|++++|++++..+..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~-~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSC-CC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCC-CC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 3455556555533322 21 45666666666665 44555566666666666666665444455556666666666666
Q ss_pred ccc
Q 040468 370 NLS 372 (543)
Q Consensus 370 ~~~ 372 (543)
.+.
T Consensus 89 ~l~ 91 (193)
T 2wfh_A 89 RLR 91 (193)
T ss_dssp CCC
T ss_pred ccC
Confidence 554
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.55 E-value=9.9e-15 Score=126.64 Aligned_cols=133 Identities=22% Similarity=0.243 Sum_probs=86.5
Q ss_pred CCCCCEEeccCCccc-ccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCc
Q 040468 44 QHDLKNANLSHLNLS-GEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLM 122 (543)
Q Consensus 44 ~~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~ 122 (543)
.++|++|++++|.++ +.+|.. +..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+.. +++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK-LPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH-CTTCC
T ss_pred cccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh-CCCCC
Confidence 366777777777665 445544 35667777777777766544 55667777777777777776435544444 67777
Q ss_pred EEEcCCCcCccCC-chhhcCCCCCCEEecccccccccCch---HhhhCCCCCCEEEccCCcCC
Q 040468 123 EFNLSRNAFNGSI-PSSFADMQMLARLDISYNQLTGEIPE---RMATGCFSLEILALSNNSLQ 181 (543)
Q Consensus 123 ~L~L~~~~i~~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~---~~~~~~~~L~~L~l~~n~~~ 181 (543)
+|++++|.+++.. +..+..+++|++|++++|.+. ..+. ..+..+++|++|++++|.+.
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChh
Confidence 7777777776422 256677777777777777776 4444 45556777777777777655
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.55 E-value=3.5e-14 Score=125.94 Aligned_cols=134 Identities=19% Similarity=0.192 Sum_probs=105.5
Q ss_pred eEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCC
Q 040468 24 TSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSN 103 (543)
Q Consensus 24 ~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~ 103 (543)
+.+++++++++ .+|..+. +++++|++++|.+.+..+..++..+++|++|++++|++++..+.+|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67888888886 5665443 38899999999887544444568888999999999988888888888899999999999
Q ss_pred CccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCch
Q 040468 104 NFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPE 161 (543)
Q Consensus 104 ~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~ 161 (543)
|.++ .++...+..+++|++|++++|.+++..|..+..+++|++|++++|.+....+.
T Consensus 88 N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 88 NKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CCCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred CcCC-ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 9888 44444444488899999999988877788888888899999988888755543
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.55 E-value=2e-15 Score=161.26 Aligned_cols=73 Identities=30% Similarity=0.431 Sum_probs=41.6
Q ss_pred CCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCc
Q 040468 304 ESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCL 379 (543)
Q Consensus 304 ~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 379 (543)
+..+..++.|+.|++++|.+. .++..+..+++|+.|+|++|.++ .+|..|..+++|++|+|++|.+. .+|..+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~ 289 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAEL 289 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSG
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhh
Confidence 344555666666666666666 44545556666666666666666 55666666666666666666665 444443
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.54 E-value=4.1e-14 Score=123.88 Aligned_cols=81 Identities=20% Similarity=0.238 Sum_probs=48.2
Q ss_pred ccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCC
Q 040468 289 IEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSH 368 (543)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~ 368 (543)
.+.++++++.++..+... .++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 455666666665433221 25666667776666644444556666666666666666644444556666666666666
Q ss_pred Cccc
Q 040468 369 NNLS 372 (543)
Q Consensus 369 n~~~ 372 (543)
|.+.
T Consensus 86 N~l~ 89 (177)
T 2o6r_A 86 NKLQ 89 (177)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 6664
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.53 E-value=1.8e-14 Score=122.23 Aligned_cols=127 Identities=22% Similarity=0.242 Sum_probs=69.7
Q ss_pred CCCCEEeccCCccc-ccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcE
Q 040468 45 HDLKNANLSHLNLS-GEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLME 123 (543)
Q Consensus 45 ~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~ 123 (543)
++|++|++++|.++ +.+|.. +..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+.. +++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK-CPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH-CTTCCE
T ss_pred ccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh-CCCCCE
Confidence 45555555555554 334432 24555555555555555433 44555666666666666665334444333 566666
Q ss_pred EEcCCCcCccC-CchhhcCCCCCCEEecccccccccCch---HhhhCCCCCCEEEcc
Q 040468 124 FNLSRNAFNGS-IPSSFADMQMLARLDISYNQLTGEIPE---RMATGCFSLEILALS 176 (543)
Q Consensus 124 L~L~~~~i~~~-~~~~l~~l~~L~~L~L~~~~~~~~~~~---~~~~~~~~L~~L~l~ 176 (543)
|++++|.+++. .+..+..+++|++|++++|.+. ..+. ..+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccccCC
Confidence 66666666532 2255666666666666666665 3333 344456666666654
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.52 E-value=5.7e-16 Score=160.42 Aligned_cols=183 Identities=19% Similarity=0.189 Sum_probs=115.4
Q ss_pred cCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCc-------------CccCCchhhcCCCCCCEEe-ccccccc
Q 040468 91 HSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNA-------------FNGSIPSSFADMQMLARLD-ISYNQLT 156 (543)
Q Consensus 91 ~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~-------------i~~~~~~~l~~l~~L~~L~-L~~~~~~ 156 (543)
..+++|+.|++++|.+. .+|..+.. +++|+.|++++|. ..+..|..+..+++|+.|+ ++.+.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 45677888888888777 77777777 7778888876653 3345566777777777777 5555433
Q ss_pred ccCchHhhh-------CCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCC
Q 040468 157 GEIPERMAT-------GCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLS 229 (543)
Q Consensus 157 ~~~~~~~~~-------~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 229 (543)
.++..... ....|+.|++++|.+++. +. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.
T Consensus 424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred -hhhhhhhhcccccccCccCceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence 22211000 012466777777766643 22 666667777777777666 55666666677777777776666
Q ss_pred CcccccccCCCCCcEEEccCCcccccC-cccccCCCCCcEEEccCCcCccCCC
Q 040468 230 GEIPRWLGNLSFLVDIIMPNNNLEGLI-PIEFCQLRFLRILDLSNNTIFGTLP 281 (543)
Q Consensus 230 ~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~ 281 (543)
. +| .++.+++|+.|++++|.+.+.. |..+..+++|+.|++++|.+.+.++
T Consensus 500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 3 34 5666666666776666666554 5666666666666666666655433
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=3.8e-14 Score=123.92 Aligned_cols=61 Identities=21% Similarity=0.260 Sum_probs=40.8
Q ss_pred cCceeEEEcccCccccccCh--hhhcccccCeeeCcCCccccccChh----hhccCCCCeeeCCCCcCc
Q 040468 464 LTSMFGIDLSCNKLTGEIPT--QIGYLTKIHALNLSHNNLTGTIPTT----FSNLKQIESLDLSYNLLH 526 (543)
Q Consensus 464 ~~~L~~L~ls~n~l~~~~~~--~l~~l~~L~~L~ls~n~i~~~~~~~----~~~l~~L~~L~l~~n~i~ 526 (543)
+++|++|++++|+++ .+|. .+..+++|+.|++++|+++ ..|.. +..+++|+.||+++|++.
T Consensus 87 l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 87 LPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 456677777777765 4554 5667777777777777776 34443 677777777777777654
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.48 E-value=2.2e-14 Score=153.28 Aligned_cols=142 Identities=25% Similarity=0.311 Sum_probs=83.8
Q ss_pred CCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhh
Q 040468 86 FRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMAT 165 (543)
Q Consensus 86 ~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~ 165 (543)
.+..+..+++|+.|+|++|.+. .+|..++. +++|++|+|++|.++ .+|..+.++++|++|+|++|.+. .+|..+.
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~- 290 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFK-YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG- 290 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGG-CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG-
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcC-CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc-
Confidence 3455666666777777776666 66666665 666777777777666 56666666777777777777666 5665543
Q ss_pred CCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCC-CCCEEEccCCcCCCccc
Q 040468 166 GCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCR-RLGGLYLSDNHLSGEIP 233 (543)
Q Consensus 166 ~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~ 233 (543)
.+++|++|+|++|.+. .++..+..+++|+.|++++|.+.+..|..+.... ....+++++|.+....|
T Consensus 291 ~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 3666777777777665 3344566677777777777776655554443321 11234555665554433
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.46 E-value=8.1e-13 Score=115.55 Aligned_cols=129 Identities=19% Similarity=0.176 Sum_probs=70.4
Q ss_pred eEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCC
Q 040468 24 TSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSN 103 (543)
Q Consensus 24 ~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~ 103 (543)
+.++++++++. .+|.. -.++|++|++++|.++ .++...+..+++|++|++++|++.+..+..+..+++|++|++++
T Consensus 10 ~~l~~~~~~l~-~~p~~--~~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTG--IPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCS-SCCTT--CCTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCc-cCCCC--CCCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 45566666555 23322 2256666666666655 34433345566666666666666554445555666666666666
Q ss_pred CccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccc
Q 040468 104 NFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTG 157 (543)
Q Consensus 104 ~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~ 157 (543)
|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 86 N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCcc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 6655 4444433335566666666666554333344555566666666665553
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=1.3e-15 Score=135.99 Aligned_cols=82 Identities=18% Similarity=0.218 Sum_probs=50.3
Q ss_pred cccEEEcCCCccccccCC------CCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCC
Q 040468 288 YIEQVHLSKNKIEGRLES------VIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEV 361 (543)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~------~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L 361 (543)
.++.++++.+.+.+..+. .+..+++|++|++++|.+++ +| .+..+++|+.|++++|+++ .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 344444444444443332 45566677777777777763 44 6666677777777777776 455555566677
Q ss_pred CEEeCCCCccc
Q 040468 362 QLIDLSHNNLS 372 (543)
Q Consensus 362 ~~L~l~~n~~~ 372 (543)
++|++++|.+.
T Consensus 96 ~~L~L~~N~l~ 106 (198)
T 1ds9_A 96 EELWISYNQIA 106 (198)
T ss_dssp SEEEEEEEECC
T ss_pred CEEECcCCcCC
Confidence 77777777664
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=3.9e-13 Score=117.41 Aligned_cols=132 Identities=19% Similarity=0.203 Sum_probs=72.1
Q ss_pred cCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCC
Q 040468 42 YHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGL 121 (543)
Q Consensus 42 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L 121 (543)
..+++|++|++++|.++ .++. +....++|++|++++|.+.+. ..+..+++|++|++++|.++ .+|..++..+++|
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L 90 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDL 90 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTC
T ss_pred CCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCC
Confidence 44556666666666555 3332 222233666666666665443 34556666666666666665 4444443335666
Q ss_pred cEEEcCCCcCccCCch--hhcCCCCCCEEecccccccccCchH---hhhCCCCCCEEEccCCcC
Q 040468 122 MEFNLSRNAFNGSIPS--SFADMQMLARLDISYNQLTGEIPER---MATGCFSLEILALSNNSL 180 (543)
Q Consensus 122 ~~L~L~~~~i~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~~~---~~~~~~~L~~L~l~~n~~ 180 (543)
++|++++|.++ .++. .+..+++|++|++++|.+. .++.. ++..+++|+.|+++.|..
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 66666666664 3333 5556666666666666665 44443 333455666666555543
No 139
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.44 E-value=1e-12 Score=116.44 Aligned_cols=126 Identities=27% Similarity=0.328 Sum_probs=65.2
Q ss_pred cEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEeccc
Q 040468 73 ETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISY 152 (543)
Q Consensus 73 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~ 152 (543)
++++++++++. .+|..+ .++|++|++++|.++ .+|..+.. +++|++|++++|.+++..+..|.++++|++|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~-l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSN-YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGG-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhc-ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 44555555553 233322 245566666666555 55543333 55566666666655544444555555566666655
Q ss_pred ccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCcc
Q 040468 153 NQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNF 204 (543)
Q Consensus 153 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~ 204 (543)
|.+. .++...+..+++|++|++++|.+.......+..+++|+.|++.+|.+
T Consensus 88 N~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 88 NRLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp SCCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 5555 44444444455555555555555544433444455555555555544
No 140
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.43 E-value=3.5e-11 Score=119.52 Aligned_cols=136 Identities=9% Similarity=0.087 Sum_probs=75.3
Q ss_pred ccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCccc
Q 040468 302 RLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVN 381 (543)
Q Consensus 302 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 381 (543)
.....|..+..|+.+.+.++... ....+|.+++.|+.+.+.. .++.....+|.+|.+|+.+++..+ +......+|..
T Consensus 256 i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 332 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG 332 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred cccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence 34456667777777777655433 4556677777777777753 344455566777777777777543 22111112211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccc
Q 040468 382 TSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQG 461 (543)
Q Consensus 382 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (543)
T Consensus 333 -------------------------------------------------------------------------------- 332 (394)
T 4gt6_A 333 -------------------------------------------------------------------------------- 332 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCc
Q 040468 462 RILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 526 (543)
Q Consensus 462 ~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~ 526 (543)
|.+|+++.|..+ ++......|.+|++|+.+++.++... ..++..+.+|+.+.+..+.+.
T Consensus 333 --C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 333 --CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp --CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC-----------
T ss_pred --CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCEE
Confidence 456777777543 55334456778888888888776543 145667777887777766543
No 141
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.39 E-value=6e-11 Score=117.81 Aligned_cols=299 Identities=12% Similarity=0.139 Sum_probs=180.7
Q ss_pred cCChhhhhcCC-CCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCc---cccCCchhhhcCCCCCcEEEcCCCcCccCC
Q 040468 60 EFPNWLVENNT-NLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNF---FQGHIPVEIGTYLPGLMEFNLSRNAFNGSI 135 (543)
Q Consensus 60 ~~~~~~~~~l~-~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~---i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~ 135 (543)
.+.+..|.+++ .|+.+.+... ++.....+|.+|.+|+.+.+..+. ++ .+....+..+.+|+.+.+..+ ++...
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~ 129 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEID 129 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceeh
Confidence 34444455553 4677777554 555556667777777777765542 44 455555555666766666543 23233
Q ss_pred chhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcC
Q 040468 136 PSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKC 215 (543)
Q Consensus 136 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~ 215 (543)
...|.++.+|+.+.+..+ +. .+....+..+.+|+.+.+..+ +.......+. ...|+.+.+..+.. .....++..+
T Consensus 130 ~~aF~~c~~L~~i~lp~~-~~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~~c 204 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPEG-VT-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT-RIGTNAFSEC 204 (394)
T ss_dssp TTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-EECTTTTTTC
T ss_pred hhhhhhhcccccccccce-ee-eecccceecccccccccccce-eeEecccccc-ccceeEEEECCccc-ccccchhhhc
Confidence 455666677777777543 22 455556666777777776554 2222223332 34566666654432 2444556666
Q ss_pred CCCCEEEccCCcCCCccc-------------ccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCC
Q 040468 216 RRLGGLYLSDNHLSGEIP-------------RWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPS 282 (543)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~-------------~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 282 (543)
..+............... ..+.....+..+.+.. .+......+|..+..|+.+.+...... ....
T Consensus 205 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~ 282 (394)
T 4gt6_A 205 FALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTG 282 (394)
T ss_dssp TTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTT
T ss_pred cccceecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCc
Confidence 666666554433221000 0111223344444433 233344567788888998888765433 3333
Q ss_pred -CCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCC
Q 040468 283 -CFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEV 361 (543)
Q Consensus 283 -~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L 361 (543)
+..++.|+.+.+. +.++......|..|.+|+.+++..+ ++.....+|.+|.+|+.+.+-.+ ++.....+|.+|.+|
T Consensus 283 aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 283 AFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTAL 359 (394)
T ss_dssp TTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTC
T ss_pred ccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCC
Confidence 3347888988886 3566667778889999999999765 55456678899999999999654 655667789999999
Q ss_pred CEEeCCCCcc
Q 040468 362 QLIDLSHNNL 371 (543)
Q Consensus 362 ~~L~l~~n~~ 371 (543)
+.+++.++..
T Consensus 360 ~~i~~~~~~~ 369 (394)
T 4gt6_A 360 NNIEYSGSRS 369 (394)
T ss_dssp CEEEESSCHH
T ss_pred CEEEECCcee
Confidence 9999988754
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.39 E-value=3.4e-15 Score=133.32 Aligned_cols=146 Identities=23% Similarity=0.302 Sum_probs=93.0
Q ss_pred CCccEEEccccccccccCc------cCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCC
Q 040468 311 PNLVTLDLSYNCLHGSIPN------RIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSL 384 (543)
Q Consensus 311 ~~L~~L~l~~~~i~~~~~~------~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 384 (543)
+.++.++++.+.+.+..|. .+..+++|+.|++++|++++ +| .+..+++|++|++++|.+. .+|..+..
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~--- 91 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV--- 91 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH---
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc---
Confidence 3444445555554444333 67777778888888877774 55 6777778888888877765 23321111
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCccccccccc
Q 040468 385 SEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRIL 464 (543)
Q Consensus 385 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (543)
+
T Consensus 92 -------------------------------------------------------------------------------~ 92 (198)
T 1ds9_A 92 -------------------------------------------------------------------------------A 92 (198)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred -------------------------------------------------------------------------------C
Confidence 4
Q ss_pred CceeEEEcccCccccccChhhhcccccCeeeCcCCccccccC-hhhhccCCCCeeeCCCCcCcccCCcc----------c
Q 040468 465 TSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIP-TTFSNLKQIESLDLSYNLLHGKIPSQ----------L 533 (543)
Q Consensus 465 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~~----------~ 533 (543)
++|++|++++|+++ .+| .+..+++|++|++++|.+++..+ ..+..+++|+.|++++|++.+.+|.. +
T Consensus 93 ~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 93 DTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HHCSEEEEEEEECC-CHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred CcCCEEECcCCcCC-cCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 57777777777777 344 57777777777777777774332 45677777777777777776555442 5
Q ss_pred cccCcCCcCC
Q 040468 534 TVLTTLAVFR 543 (543)
Q Consensus 534 ~~l~~L~~l~ 543 (543)
..+++|+.|+
T Consensus 171 ~~l~~L~~Ld 180 (198)
T 1ds9_A 171 KRLPNLKKLD 180 (198)
T ss_dssp HHCSSCSEEC
T ss_pred HhCCCcEEEC
Confidence 6666666553
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.33 E-value=4.1e-12 Score=110.01 Aligned_cols=108 Identities=23% Similarity=0.224 Sum_probs=81.3
Q ss_pred CccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCC
Q 040468 312 NLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEP 391 (543)
Q Consensus 312 ~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~ 391 (543)
..+.++++++.++ .+|..+. ++|+.|++++|++++..+..|.++++|++|++++|.+.+..+..+..
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~---------- 76 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK---------- 76 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT----------
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccC----------
Confidence 3568889998888 5665553 77889999999988777778888889999999988886332222222
Q ss_pred CCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEE
Q 040468 392 VAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGID 471 (543)
Q Consensus 392 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 471 (543)
+++|++|+
T Consensus 77 ------------------------------------------------------------------------l~~L~~L~ 84 (170)
T 3g39_A 77 ------------------------------------------------------------------------LTQLTQLS 84 (170)
T ss_dssp ------------------------------------------------------------------------CTTCCEEE
T ss_pred ------------------------------------------------------------------------CCCCCEEE
Confidence 56888888
Q ss_pred cccCccccccChhhhcccccCeeeCcCCccccc
Q 040468 472 LSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGT 504 (543)
Q Consensus 472 ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~ 504 (543)
|++|+++...+..|..+++|++|+|++|+++..
T Consensus 85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 888888844445688888888888888888744
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.24 E-value=4.4e-11 Score=103.49 Aligned_cols=106 Identities=24% Similarity=0.192 Sum_probs=82.5
Q ss_pred CcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCc
Q 040468 266 LRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANN 345 (543)
Q Consensus 266 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n 345 (543)
.+.++++++.+...+... ++.++.|++++|.+++..+..|..+++|++|++++|+++...+..|..+++|+.|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 456777777776544333 367888888888888777777888888888888888888666667788888999999988
Q ss_pred ccccccchhhhCCCCCCEEeCCCCcccc
Q 040468 346 YIEGEIPVQLCQLKEVQLIDLSHNNLSG 373 (543)
Q Consensus 346 ~i~~~~~~~l~~l~~L~~L~l~~n~~~~ 373 (543)
++++..+..|..+++|++|++++|++..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 8886656668888889999999888763
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.24 E-value=4.5e-11 Score=103.78 Aligned_cols=104 Identities=19% Similarity=0.237 Sum_probs=70.8
Q ss_pred CEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcC
Q 040468 48 KNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLS 127 (543)
Q Consensus 48 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~ 127 (543)
+.++++++.+. .+|..+ .++|++|++++|++.+..+..|..+++|++|++++|.++ .+|..++..+++|++|+++
T Consensus 15 ~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECC
Confidence 56677777664 566544 366777777777776666667777777777777777776 5666655456777777777
Q ss_pred CCcCccCCchhhcCCCCCCEEeccccccc
Q 040468 128 RNAFNGSIPSSFADMQMLARLDISYNQLT 156 (543)
Q Consensus 128 ~~~i~~~~~~~l~~l~~L~~L~L~~~~~~ 156 (543)
+|.+++..+..+..+++|++|++++|.+.
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 77777444445677777777777777666
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.23 E-value=3.6e-13 Score=131.97 Aligned_cols=168 Identities=16% Similarity=0.088 Sum_probs=89.8
Q ss_pred CCCCEEeccCCcccccCChhhh----hcCCCCcEEEccCCcccccCCCCC-cCCCCCCEEEcCCCccccCCchhhh----
Q 040468 45 HDLKNANLSHLNLSGEFPNWLV----ENNTNLETLLLANNSLFGSFRMPI-HSHQKLATLDVSNNFFQGHIPVEIG---- 115 (543)
Q Consensus 45 ~~L~~L~l~~~~~~~~~~~~~~----~~l~~L~~L~L~~~~~~~~~~~~~-~~~~~L~~L~ls~~~i~~~~~~~~~---- 115 (543)
++|++|++++|.++......+. ..+.+|++|+|++|.+++.....+ ..+++|++|++++|.+++.....+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 5666777776666532222211 122566777777766643322222 2345667777777766533222222
Q ss_pred cCCCCCcEEEcCCCcCccC----CchhhcCCCCCCEEecccccccccCch---HhhhCCCCCCEEEccCCcCCCcCc---
Q 040468 116 TYLPGLMEFNLSRNAFNGS----IPSSFADMQMLARLDISYNQLTGEIPE---RMATGCFSLEILALSNNSLQGHIF--- 185 (543)
Q Consensus 116 ~~l~~L~~L~L~~~~i~~~----~~~~l~~l~~L~~L~L~~~~~~~~~~~---~~~~~~~~L~~L~l~~n~~~~~~~--- 185 (543)
...++|++|++++|.++.. ++..+..+++|++|++++|.+.+.... ..+...++|++|++++|.++....
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 1245677777777766532 233445566777777777766532211 112235567777777777664322
Q ss_pred -ccccCCCCcCEEeCCCCccCccCchhh
Q 040468 186 -SKKFSLTNLMTLQLDGNNFSGEIPESL 212 (543)
Q Consensus 186 -~~l~~l~~L~~L~l~~~~~~~~~~~~l 212 (543)
..+...++|++|++++|.++......+
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 223345677777777777665443333
No 147
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.22 E-value=2.7e-09 Score=105.37 Aligned_cols=338 Identities=8% Similarity=0.037 Sum_probs=172.5
Q ss_pred CcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCC
Q 040468 90 IHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFS 169 (543)
Q Consensus 90 ~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 169 (543)
+....+|+.+.+... ++ .++...+..|.+|+.+++..+ ++.....+|.++ +|+.+.+..+ +. .+....|..+ +
T Consensus 42 ~~~~~~i~~v~ip~~-vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~-~ 114 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-IT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGT-D 114 (379)
T ss_dssp GGGGGGCSEEEECTT-EE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTC-C
T ss_pred cccccCCEEEEeCCC-cc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccC-C
Confidence 455677888887643 55 666777777888888888654 443444566665 5666666543 33 4555555533 6
Q ss_pred CCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccC
Q 040468 170 LEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPN 249 (543)
Q Consensus 170 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 249 (543)
|+.+.+..+- .......+.. .+++.+.+..+ ++......+..+..++.+.+............. ..
T Consensus 115 L~~i~lp~~~-~~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~-~~---------- 180 (379)
T 4h09_A 115 LDDFEFPGAT-TEIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYV-LY---------- 180 (379)
T ss_dssp CSEEECCTTC-CEECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTE-EE----------
T ss_pred cccccCCCcc-cccccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceeecccce-ec----------
Confidence 7777765542 2122222222 24444444332 222333445555555555544332210000000 00
Q ss_pred CcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCc
Q 040468 250 NNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPN 329 (543)
Q Consensus 250 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~ 329 (543)
.........+.....+..+.+......-.......+..++.+.+..+ +.......+..+..|+.+.+..+ ++.....
T Consensus 181 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~ 257 (379)
T 4h09_A 181 -NKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSF 257 (379)
T ss_dssp -ETTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTT
T ss_pred -ccccceeccccccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCcc
Confidence 00001112233344455555444322212222233556666666543 33344556666777777777654 4434455
Q ss_pred cCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 040468 330 RIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSY 409 (543)
Q Consensus 330 ~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 409 (543)
++..+.+|+.+.+..+ +......+|.+|.+|+.+.+.++.+......+|..
T Consensus 258 aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~---------------------------- 308 (379)
T 4h09_A 258 LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMD---------------------------- 308 (379)
T ss_dssp TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTT----------------------------
T ss_pred ccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcC----------------------------
Confidence 6677777777777543 43344556777777777777666554322223322
Q ss_pred cccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhccc
Q 040468 410 TKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLT 489 (543)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~ 489 (543)
+.+|++++|..+ ++......|.+|+
T Consensus 309 ------------------------------------------------------c~~L~~i~lp~~-l~~I~~~aF~~C~ 333 (379)
T 4h09_A 309 ------------------------------------------------------CVKLSSVTLPTA-LKTIQVYAFKNCK 333 (379)
T ss_dssp ------------------------------------------------------CTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred ------------------------------------------------------CCCCCEEEcCcc-ccEEHHHHhhCCC
Confidence 456777777543 5534456688888
Q ss_pred ccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcccCCccccccCcCC
Q 040468 490 KIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLA 540 (543)
Q Consensus 490 ~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 540 (543)
+|+.+.|..+ ++.....+|.+++.++ +... +...-...++.+++||
T Consensus 334 ~L~~i~ip~~-v~~I~~~aF~~c~~~~-~~~~---~~~~~~~~f~~~~~Lk 379 (379)
T 4h09_A 334 ALSTISYPKS-ITLIESGAFEGSSITK-YPTW---LSKGNNGDYGIFTKIK 379 (379)
T ss_dssp TCCCCCCCTT-CCEECTTTTTTSSCCC-CCTT---CEECTTSCEEC-----
T ss_pred CCCEEEECCc-cCEEchhHhhCCCCCc-Cccc---cccCceeehhhhhhcC
Confidence 8888888654 5555566777765433 2222 2222234466666664
No 148
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.20 E-value=3.6e-09 Score=104.42 Aligned_cols=315 Identities=11% Similarity=0.068 Sum_probs=157.3
Q ss_pred ccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCC
Q 040468 41 LYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPG 120 (543)
Q Consensus 41 l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~ 120 (543)
.....+|+.+.+... ++ .+++..|.+|.+|+.+.+..+ ++.....+|.++ +|+.+.+..+ ++ .+....+.. .+
T Consensus 42 ~~~~~~i~~v~ip~~-vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~-~~ 114 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-IT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQG-TD 114 (379)
T ss_dssp GGGGGGCSEEEECTT-EE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTT-CC
T ss_pred cccccCCEEEEeCCC-cc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-Eeccceecc-CC
Confidence 344556677666542 33 555555677777777777543 445555666665 4666655432 33 444455553 36
Q ss_pred CcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCC
Q 040468 121 LMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLD 200 (543)
Q Consensus 121 L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 200 (543)
|+.+.+..+... .....|.+ ..++...+..+ +. .+....+..+..++.+.+.............. .
T Consensus 115 L~~i~lp~~~~~-i~~~~F~~-~~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~-~--------- 180 (379)
T 4h09_A 115 LDDFEFPGATTE-IGNYIFYN-SSVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVL-Y--------- 180 (379)
T ss_dssp CSEEECCTTCCE-ECTTTTTT-CCCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTEE-E---------
T ss_pred cccccCCCcccc-cccccccc-ceeeeeeccce-ee-ccccchhcccccccccccccccceeeccccee-c---------
Confidence 777766554221 22233333 24554444332 22 33333444455555555443321100000000 0
Q ss_pred CCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCC
Q 040468 201 GNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTL 280 (543)
Q Consensus 201 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 280 (543)
+. .......+.....+..+.+...... .....+..+..++.+.+..+ +.......+..+..|+.+.+..+ ++...
T Consensus 181 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~ 255 (379)
T 4h09_A 181 -NK-NKTILESYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIG 255 (379)
T ss_dssp -ET-TSSEEEECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEEC
T ss_pred -cc-ccceeccccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeC
Confidence 00 0001111222333444443332111 22333445555666555433 23333445556666666666544 33233
Q ss_pred CCCCC-cccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCC
Q 040468 281 PSCFS-PAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLK 359 (543)
Q Consensus 281 ~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~ 359 (543)
...+. +..|+.+.+..+ +.......|..|.+|+.+.+.++.++.....+|.+|.+|+.+.+..+ ++.....+|.+|.
T Consensus 256 ~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 333 (379)
T 4h09_A 256 SFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCK 333 (379)
T ss_dssp TTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred ccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCC
Confidence 33332 566666666542 44445556777777777777777666555667777777777777644 4445556677777
Q ss_pred CCCEEeCCCCcccccCCCCcccCCC
Q 040468 360 EVQLIDLSHNNLSGHIPPCLVNTSL 384 (543)
Q Consensus 360 ~L~~L~l~~n~~~~~~~~~~~~~~~ 384 (543)
+|+.+.+..+ +......+|.++..
T Consensus 334 ~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 334 ALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp TCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred CCCEEEECCc-cCEEchhHhhCCCC
Confidence 7777777654 43334445555543
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.20 E-value=1.1e-10 Score=101.41 Aligned_cols=104 Identities=22% Similarity=0.206 Sum_probs=75.8
Q ss_pred cEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcc
Q 040468 267 RILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNY 346 (543)
Q Consensus 267 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~ 346 (543)
+.++++++.+...+... ++.|+.|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 45666666665433322 3667777777777777767777788888888888888885555556788888888888888
Q ss_pred cccccchhhhCCCCCCEEeCCCCccc
Q 040468 347 IEGEIPVQLCQLKEVQLIDLSHNNLS 372 (543)
Q Consensus 347 i~~~~~~~l~~l~~L~~L~l~~n~~~ 372 (543)
+++..+..|..+++|++|++++|++.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 87555555778888888888888875
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.17 E-value=1.6e-12 Score=127.33 Aligned_cols=162 Identities=17% Similarity=0.081 Sum_probs=91.2
Q ss_pred CCCCcEEEccCCcccccCCCCCc-----CCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhh----
Q 040468 69 NTNLETLLLANNSLFGSFRMPIH-----SHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSF---- 139 (543)
Q Consensus 69 l~~L~~L~L~~~~~~~~~~~~~~-----~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l---- 139 (543)
++.|++|++++|.++......+. ..++|++|++++|.+.+.....+...+++|++|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46778888888877543322222 236788888888877644444444445677788888877764333333
Q ss_pred -cCCCCCCEEecccccccccCchHh---hhCCCCCCEEEccCCcCCCcC----cccccCCCCcCEEeCCCCccCccC---
Q 040468 140 -ADMQMLARLDISYNQLTGEIPERM---ATGCFSLEILALSNNSLQGHI----FSKKFSLTNLMTLQLDGNNFSGEI--- 208 (543)
Q Consensus 140 -~~l~~L~~L~L~~~~~~~~~~~~~---~~~~~~L~~L~l~~n~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~--- 208 (543)
...+.|++|++++|.++......+ +...++|++|++++|.+.+.. ...+...++|+.|++++|.++...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 234667777777777653211111 133566777777777665322 233344556666666666655321
Q ss_pred -chhhhcCCCCCEEEccCCcCCC
Q 040468 209 -PESLSKCRRLGGLYLSDNHLSG 230 (543)
Q Consensus 209 -~~~l~~~~~L~~L~l~~~~~~~ 230 (543)
+..+...++|++|++++|.+..
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHhCCCCCEEeccCCCCCH
Confidence 2223344556666666665543
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.03 E-value=7.1e-10 Score=108.08 Aligned_cols=80 Identities=16% Similarity=0.216 Sum_probs=61.4
Q ss_pred EEEcCCC-ccccccCCCCCCCCCccEEEccc-cccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCC
Q 040468 291 QVHLSKN-KIEGRLESVIPDSPNLVTLDLSY-NCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSH 368 (543)
Q Consensus 291 ~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~ 368 (543)
.++.+++ .++..+ . +..+++|++|+|++ |.++...+..|..+++|+.|+|++|++++..+..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~~ip-~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLH-H-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTT-T-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccC-C-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566766 676543 3 77778888888885 888866667788888888888888888877777788888888888888
Q ss_pred Cccc
Q 040468 369 NNLS 372 (543)
Q Consensus 369 n~~~ 372 (543)
|.+.
T Consensus 90 N~l~ 93 (347)
T 2ifg_A 90 NALE 93 (347)
T ss_dssp SCCS
T ss_pred Cccc
Confidence 8876
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.01 E-value=7.2e-10 Score=108.04 Aligned_cols=133 Identities=17% Similarity=0.119 Sum_probs=96.2
Q ss_pred cEEEcccc-ccccccCccCCCCCCCCEEEccC-cccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCC
Q 040468 314 VTLDLSYN-CLHGSIPNRIDRLPQLSYLLLAN-NYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEP 391 (543)
Q Consensus 314 ~~L~l~~~-~i~~~~~~~l~~~~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~ 391 (543)
..++++++ +++ .+|. +..+++|+.|+|++ |.+.+..+..|.++++|+.|+|++|.+.+..|..|..
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~---------- 78 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF---------- 78 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGS----------
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcC----------
Confidence 35688887 888 5777 88899999999996 8998777778899999999999999988665555543
Q ss_pred CCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEE
Q 040468 392 VAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGID 471 (543)
Q Consensus 392 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 471 (543)
+++|++|+
T Consensus 79 ------------------------------------------------------------------------l~~L~~L~ 86 (347)
T 2ifg_A 79 ------------------------------------------------------------------------TPRLSRLN 86 (347)
T ss_dssp ------------------------------------------------------------------------CSCCCEEE
T ss_pred ------------------------------------------------------------------------CcCCCEEe
Confidence 56899999
Q ss_pred cccCccccccChhhhcccccCeeeCcCCccccccC-hhhhccCCCCeeeCCCCcCcccCCc
Q 040468 472 LSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIP-TTFSNLKQIESLDLSYNLLHGKIPS 531 (543)
Q Consensus 472 ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~ 531 (543)
|++|+++...+..+..++ |+.|+|.+|.+...-. .+|..........+..+.+.+..|.
T Consensus 87 l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~ 146 (347)
T 2ifg_A 87 LSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQG 146 (347)
T ss_dssp CCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSS
T ss_pred CCCCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCCh
Confidence 999999943344455555 9999999999874322 3444444444445555556555554
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.86 E-value=2.4e-09 Score=103.85 Aligned_cols=15 Identities=7% Similarity=-0.153 Sum_probs=9.5
Q ss_pred ccCCCCCcEEEccCC
Q 040468 260 FCQLRFLRILDLSNN 274 (543)
Q Consensus 260 l~~l~~L~~L~l~~~ 274 (543)
...+++|+.|.+...
T Consensus 135 ~~~l~~L~~L~l~~~ 149 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDI 149 (362)
T ss_dssp HHHHTTCSEEEECCC
T ss_pred hhhcchhhheeecCc
Confidence 345567888877553
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.85 E-value=8.5e-09 Score=100.02 Aligned_cols=158 Identities=14% Similarity=0.108 Sum_probs=89.2
Q ss_pred ceeEEEeeCCCCCC-Cc-------chhccCCCCCCEEeccCCccc--------ccCChhhhhcCCCCcEEEccCCccccc
Q 040468 22 QLTSISLSGYIDGG-TF-------PKFLYHQHDLKNANLSHLNLS--------GEFPNWLVENNTNLETLLLANNSLFGS 85 (543)
Q Consensus 22 ~L~~L~L~~~~~~~-~~-------~~~l~~~~~L~~L~l~~~~~~--------~~~~~~~~~~l~~L~~L~L~~~~~~~~ 85 (543)
+++.|.+....+.+ .. .+.+.++++|+.|.+.+.... ......++..+++|+.|.++++.-. .
T Consensus 108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~ 186 (362)
T 2ra8_A 108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-S 186 (362)
T ss_dssp GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-B
T ss_pred hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-e
Confidence 68888888766552 21 333556789999988654321 0112345577889999999887311 2
Q ss_pred CCCCCcCCCCCCEEEcCCCccccCCchhhhc-CCCCCcEEEcCCC--cCccC-----Cchhh--cCCCCCCEEecccccc
Q 040468 86 FRMPIHSHQKLATLDVSNNFFQGHIPVEIGT-YLPGLMEFNLSRN--AFNGS-----IPSSF--ADMQMLARLDISYNQL 155 (543)
Q Consensus 86 ~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~-~l~~L~~L~L~~~--~i~~~-----~~~~l--~~l~~L~~L~L~~~~~ 155 (543)
.+. +. +++|++|++..+.+.......+.. .+++|++|+|+.+ ...+. +...+ ..+++|++|++.+|.+
T Consensus 187 l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i 264 (362)
T 2ra8_A 187 IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE 264 (362)
T ss_dssp CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTT
T ss_pred ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCC
Confidence 222 33 788888888887766433334431 3788888887531 11111 11112 2356777777776666
Q ss_pred cccCchHhhh--CCCCCCEEEccCCcCCC
Q 040468 156 TGEIPERMAT--GCFSLEILALSNNSLQG 182 (543)
Q Consensus 156 ~~~~~~~~~~--~~~~L~~L~l~~n~~~~ 182 (543)
.+..+..++. .+++|++|+++.|.+.+
T Consensus 265 ~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 265 QNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp HHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred chHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 5333333332 24455555555555443
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.50 E-value=3.3e-08 Score=86.46 Aligned_cols=62 Identities=8% Similarity=0.209 Sum_probs=32.2
Q ss_pred CceeEEEcccCccccc----cChhhhcccccCeeeC--cCCcccccc----ChhhhccCCCCeeeCCCCcCc
Q 040468 465 TSMFGIDLSCNKLTGE----IPTQIGYLTKIHALNL--SHNNLTGTI----PTTFSNLKQIESLDLSYNLLH 526 (543)
Q Consensus 465 ~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~l--s~n~i~~~~----~~~~~~l~~L~~L~l~~n~i~ 526 (543)
++|++|+|++|.+.+. +...+...++|++|+| ++|.|.+.. .+.+...++|+.|++++|.+.
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3455555555555533 2334455555666666 556655432 233444456666666666653
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.44 E-value=1.5e-07 Score=86.36 Aligned_cols=78 Identities=22% Similarity=0.320 Sum_probs=64.5
Q ss_pred cCceeEEEcccCcccc--ccChhhhcccccCeeeCcCCccccccChhhhccC--CCCeeeCCCCcCcccCCc-------c
Q 040468 464 LTSMFGIDLSCNKLTG--EIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLK--QIESLDLSYNLLHGKIPS-------Q 532 (543)
Q Consensus 464 ~~~L~~L~ls~n~l~~--~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~--~L~~L~l~~n~i~~~~~~-------~ 532 (543)
+++|++|+|++|++++ .+|..+..+++|+.|+|++|.|.+. ..+..++ +|++|++++|++.+.+|. .
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 7899999999999996 3456788999999999999999954 3455566 999999999999876652 4
Q ss_pred ccccCcCCcCC
Q 040468 533 LTVLTTLAVFR 543 (543)
Q Consensus 533 ~~~l~~L~~l~ 543 (543)
+..+++|+.|+
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 67888888775
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.33 E-value=1.4e-07 Score=82.35 Aligned_cols=120 Identities=15% Similarity=0.259 Sum_probs=82.8
Q ss_pred cchhccCCCCCCEEeccCC-cccccCChhh---hhcCCCCcEEEccCCccccc----CCCCCcCCCCCCEEEcCCCcccc
Q 040468 37 FPKFLYHQHDLKNANLSHL-NLSGEFPNWL---VENNTNLETLLLANNSLFGS----FRMPIHSHQKLATLDVSNNFFQG 108 (543)
Q Consensus 37 ~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~---~~~l~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~ls~~~i~~ 108 (543)
+...+...++|++|+|++| .+.+.....+ +...++|++|+|++|.+.+. +..++...+.|++|+|++|.+.+
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3455667888999999888 7764322222 34567889999999887543 23445566789999999998875
Q ss_pred CCchhhh---cCCCCCcEEEc--CCCcCccC----CchhhcCCCCCCEEeccccccc
Q 040468 109 HIPVEIG---TYLPGLMEFNL--SRNAFNGS----IPSSFADMQMLARLDISYNQLT 156 (543)
Q Consensus 109 ~~~~~~~---~~l~~L~~L~L--~~~~i~~~----~~~~l~~l~~L~~L~L~~~~~~ 156 (543)
.....++ ...+.|++|++ ++|.++.. +.+.+...+.|++|++++|.+.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4332232 22568999999 77888743 3345566688999999988775
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.31 E-value=2.1e-07 Score=79.15 Aligned_cols=86 Identities=9% Similarity=0.060 Sum_probs=56.7
Q ss_pred CCCceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCc-ccccCChhhhhc----CCCCcEEEccCCc-ccccCCCCCcC
Q 040468 19 PKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLN-LSGEFPNWLVEN----NTNLETLLLANNS-LFGSFRMPIHS 92 (543)
Q Consensus 19 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~----l~~L~~L~L~~~~-~~~~~~~~~~~ 92 (543)
+.++|++||+++|.++..-...+..|++|++|+|++|. +++.....+ .. +++|++|+|++|. +++..-..+..
T Consensus 59 ~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L-~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~ 137 (176)
T 3e4g_A 59 DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL-SQLENLQKSMLEMEIISCGNVTDKGIIALHH 137 (176)
T ss_dssp TCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHH-HTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred CCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHH-HhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence 34578888888888776645556778888888888874 665444443 33 2467777777774 55544444566
Q ss_pred CCCCCEEEcCCCc
Q 040468 93 HQKLATLDVSNNF 105 (543)
Q Consensus 93 ~~~L~~L~ls~~~ 105 (543)
+++|++|++++|.
T Consensus 138 ~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 138 FRNLKYLFLSDLP 150 (176)
T ss_dssp CTTCCEEEEESCT
T ss_pred CCCCCEEECCCCC
Confidence 7777777777764
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.28 E-value=2.2e-07 Score=79.05 Aligned_cols=86 Identities=9% Similarity=0.059 Sum_probs=67.0
Q ss_pred cccccEEEcCCCccccccCCCCCCCCCccEEEccccc-cccccCccCCCC----CCCCEEEccCc-ccccccchhhhCCC
Q 040468 286 PAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNC-LHGSIPNRIDRL----PQLSYLLLANN-YIEGEIPVQLCQLK 359 (543)
Q Consensus 286 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~~~----~~L~~L~l~~n-~i~~~~~~~l~~l~ 359 (543)
...|+.|++++|.+++.....+..+++|++|++++|. +++.....+..+ ++|+.|++++| +|++..-..+..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3467888888888777666667788999999999984 776655566654 47999999998 48876667778899
Q ss_pred CCCEEeCCCCcc
Q 040468 360 EVQLIDLSHNNL 371 (543)
Q Consensus 360 ~L~~L~l~~n~~ 371 (543)
+|++|++++|+-
T Consensus 140 ~L~~L~L~~c~~ 151 (176)
T 3e4g_A 140 NLKYLFLSDLPG 151 (176)
T ss_dssp TCCEEEEESCTT
T ss_pred CCCEEECCCCCC
Confidence 999999999874
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.85 E-value=1.8e-05 Score=72.67 Aligned_cols=81 Identities=21% Similarity=0.242 Sum_probs=52.8
Q ss_pred cCCCCCCEEEcCCCcccc--CCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCC--CCCEEecccccccccCc------
Q 040468 91 HSHQKLATLDVSNNFFQG--HIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQ--MLARLDISYNQLTGEIP------ 160 (543)
Q Consensus 91 ~~~~~L~~L~ls~~~i~~--~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~--~L~~L~L~~~~~~~~~~------ 160 (543)
.++++|+.|+|++|.+.+ .++..+.. +++|+.|+|++|.+.+. ..+..++ +|++|++++|.+.+.++
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~-l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQK-APNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHH-STTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhh-CCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 456778888888887773 22233333 77888888888887743 2333344 78888888888775444
Q ss_pred hHhhhCCCCCCEEE
Q 040468 161 ERMATGCFSLEILA 174 (543)
Q Consensus 161 ~~~~~~~~~L~~L~ 174 (543)
..+...+|+|+.|+
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 23455688888876
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.97 E-value=0.00027 Score=61.17 Aligned_cols=113 Identities=22% Similarity=0.322 Sum_probs=53.9
Q ss_pred cCCCCCCEEeccCC-cccccCChhh---hhcCCCCcEEEccCCcccccCC----CCCcCCCCCCEEEcCCCccccCCchh
Q 040468 42 YHQHDLKNANLSHL-NLSGEFPNWL---VENNTNLETLLLANNSLFGSFR----MPIHSHQKLATLDVSNNFFQGHIPVE 113 (543)
Q Consensus 42 ~~~~~L~~L~l~~~-~~~~~~~~~~---~~~l~~L~~L~L~~~~~~~~~~----~~~~~~~~L~~L~ls~~~i~~~~~~~ 113 (543)
..-+.|++|+|+++ .+.+.-...+ +..-..|+.|+|++|.+.+... ++++.-+.|++|+|++|.|.+.....
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34466666776664 5543211111 1233456666666666643322 22334456666666666665433333
Q ss_pred hhcC---CCCCcEEEcCCC---cCcc----CCchhhcCCCCCCEEeccccc
Q 040468 114 IGTY---LPGLMEFNLSRN---AFNG----SIPSSFADMQMLARLDISYNQ 154 (543)
Q Consensus 114 ~~~~---l~~L~~L~L~~~---~i~~----~~~~~l~~l~~L~~L~L~~~~ 154 (543)
+.+. -+.|++|+|+++ .+.. .+.+.+..-+.|++|+++.+.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 3322 234666666543 2221 122334444555555555443
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.93 E-value=0.0011 Score=53.46 Aligned_cols=39 Identities=21% Similarity=0.199 Sum_probs=26.5
Q ss_pred cCceeEEEcccCccccccChhhhcccccCeeeCcCCccc
Q 040468 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLT 502 (543)
Q Consensus 464 ~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~ 502 (543)
.++|++|+|++|+++...+..|..+++|+.|+|++|++.
T Consensus 30 p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 30 PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 557777777777777333445677777777777777765
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.84 E-value=0.00051 Score=59.43 Aligned_cols=18 Identities=6% Similarity=0.228 Sum_probs=8.2
Q ss_pred CcCCCCCCEEEcCCCccc
Q 040468 90 IHSHQKLATLDVSNNFFQ 107 (543)
Q Consensus 90 ~~~~~~L~~L~ls~~~i~ 107 (543)
++.-..|++|+|++|.+.
T Consensus 66 L~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp HTTCSCCCEEECTTSCCB
T ss_pred HhhCCCcCEEEccCCCCC
Confidence 333444444444444444
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.55 E-value=0.022 Score=45.77 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=18.0
Q ss_pred CCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcC
Q 040468 95 KLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAF 131 (543)
Q Consensus 95 ~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i 131 (543)
+|++|+|++|.++ .++..++..+++|++|+|++|++
T Consensus 32 ~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCe
Confidence 3455555555554 44444444455555555555544
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=65.65 E-value=6.2 Score=29.47 Aligned_cols=42 Identities=14% Similarity=0.110 Sum_probs=21.0
Q ss_pred CChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCC
Q 040468 61 FPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSN 103 (543)
Q Consensus 61 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~ 103 (543)
+....|.+|..|+.+.+... ++.+-..+|.+|.+|+.+.+..
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34444455555555555443 3334444555555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=59.99 E-value=11 Score=28.13 Aligned_cols=39 Identities=8% Similarity=-0.045 Sum_probs=16.8
Q ss_pred ccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCC
Q 040468 329 NRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSH 368 (543)
Q Consensus 329 ~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~ 368 (543)
.+|.+|.+|+.+.+-.+ ++.+...+|.+|.+|+.+.+.+
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34444444444444432 2223334444455555444443
Done!