Query 040471
Match_columns 340
No_of_seqs 158 out of 1989
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 08:46:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040471.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040471hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.9 3.2E-26 7E-31 189.7 1.2 276 9-313 97-390 (419)
2 KOG4341 F-box protein containi 99.8 1.1E-20 2.5E-25 163.5 -2.3 259 11-318 73-380 (483)
3 KOG4341 F-box protein containi 99.2 9.9E-12 2.2E-16 108.6 2.5 175 148-323 267-465 (483)
4 PLN03210 Resistant to P. syrin 99.1 2.3E-10 5E-15 118.0 11.8 180 140-323 625-859 (1153)
5 PF12937 F-box-like: F-box-lik 99.1 9.4E-11 2E-15 72.6 2.6 36 10-45 1-36 (47)
6 PLN00113 leucine-rich repeat r 99.0 9.6E-10 2.1E-14 112.5 9.9 91 140-231 155-247 (968)
7 PLN00113 leucine-rich repeat r 99.0 1.2E-09 2.5E-14 111.9 9.8 173 120-300 164-343 (968)
8 cd00116 LRR_RI Leucine-rich re 99.0 1.7E-09 3.6E-14 96.4 7.7 203 120-324 51-292 (319)
9 KOG2120 SCF ubiquitin ligase, 98.9 7E-10 1.5E-14 93.2 2.4 151 116-271 230-390 (419)
10 PLN03210 Resistant to P. syrin 98.8 3.8E-08 8.3E-13 101.9 10.9 40 264-303 865-907 (1153)
11 KOG4194 Membrane glycoprotein 98.7 8.3E-09 1.8E-13 94.3 3.7 103 120-229 149-254 (873)
12 cd00116 LRR_RI Leucine-rich re 98.7 1.9E-08 4.2E-13 89.6 6.0 195 119-320 80-317 (319)
13 PF00646 F-box: F-box domain; 98.7 5.1E-09 1.1E-13 65.2 0.7 37 9-45 2-38 (48)
14 KOG3207 Beta-tubulin folding c 98.6 1.2E-08 2.6E-13 90.1 0.0 109 120-231 146-257 (505)
15 smart00256 FBOX A Receptor for 98.5 6E-08 1.3E-12 58.0 1.9 33 13-45 1-33 (41)
16 KOG3207 Beta-tubulin folding c 98.4 1E-07 2.2E-12 84.3 2.7 174 147-323 119-314 (505)
17 KOG1947 Leucine rich repeat pr 98.4 1.5E-07 3.3E-12 88.7 2.7 109 120-231 188-306 (482)
18 KOG1947 Leucine rich repeat pr 98.3 4.6E-07 1E-11 85.4 3.6 129 171-300 186-332 (482)
19 KOG4194 Membrane glycoprotein 98.3 6E-08 1.3E-12 88.8 -2.9 13 171-183 267-279 (873)
20 PF14580 LRR_9: Leucine-rich r 98.2 2.1E-06 4.7E-11 68.7 5.7 101 121-231 20-124 (175)
21 PF14580 LRR_9: Leucine-rich r 98.1 5.6E-07 1.2E-11 72.1 0.4 78 148-231 18-99 (175)
22 KOG1909 Ran GTPase-activating 98.1 2.5E-06 5.5E-11 73.7 3.3 226 89-322 30-310 (382)
23 PRK15387 E3 ubiquitin-protein 98.1 1.7E-05 3.6E-10 77.8 9.3 12 220-231 302-313 (788)
24 PRK15387 E3 ubiquitin-protein 98.0 2.3E-05 5.1E-10 76.8 9.0 180 120-323 201-395 (788)
25 KOG3665 ZYG-1-like serine/thre 98.0 4.2E-06 9E-11 81.3 3.5 126 149-298 122-259 (699)
26 KOG0444 Cytoskeletal regulator 98.0 2.1E-07 4.6E-12 86.1 -5.3 60 121-185 79-138 (1255)
27 KOG1909 Ran GTPase-activating 97.9 5.8E-06 1.3E-10 71.5 3.1 179 120-301 92-310 (382)
28 PRK15370 E3 ubiquitin-protein 97.7 0.00014 3.1E-09 71.5 8.3 75 149-231 220-294 (754)
29 KOG0618 Serine/threonine phosp 97.6 4.9E-06 1.1E-10 80.4 -2.7 125 172-302 358-489 (1081)
30 KOG0444 Cytoskeletal regulator 97.6 1.7E-06 3.7E-11 80.3 -5.9 39 264-302 335-375 (1255)
31 PRK15370 E3 ubiquitin-protein 97.5 5.9E-05 1.3E-09 74.2 3.5 74 120-208 220-293 (754)
32 KOG3665 ZYG-1-like serine/thre 97.5 8.9E-05 1.9E-09 72.2 4.5 155 115-278 117-285 (699)
33 KOG2982 Uncharacterized conser 97.3 0.00013 2.8E-09 62.2 2.1 86 120-208 71-156 (418)
34 KOG0618 Serine/threonine phosp 97.3 1.8E-05 4E-10 76.6 -3.5 128 148-280 358-488 (1081)
35 KOG0617 Ras suppressor protein 97.2 3.7E-06 8E-11 65.6 -7.1 162 144-319 28-199 (264)
36 KOG1259 Nischarin, modulator o 97.2 0.00021 4.7E-09 60.9 2.6 59 171-231 282-340 (490)
37 PRK15386 type III secretion pr 97.2 0.00087 1.9E-08 60.7 6.2 32 268-299 156-187 (426)
38 KOG4658 Apoptotic ATPase [Sign 97.1 9.2E-05 2E-09 74.1 -0.7 82 120-208 571-652 (889)
39 PF13855 LRR_8: Leucine rich r 97.1 0.00019 4E-09 46.9 0.6 36 150-185 2-37 (61)
40 KOG3864 Uncharacterized conser 97.0 0.00012 2.6E-09 58.8 -0.6 92 140-231 92-187 (221)
41 KOG0472 Leucine-rich repeat pr 97.0 0.00026 5.7E-09 62.7 1.2 37 289-325 505-543 (565)
42 PF13855 LRR_8: Leucine rich r 97.0 0.00028 6.2E-09 46.0 0.8 59 120-184 1-60 (61)
43 KOG2982 Uncharacterized conser 96.9 0.00086 1.9E-08 57.3 3.6 82 150-231 46-132 (418)
44 KOG4237 Extracellular matrix p 96.9 0.00015 3.2E-09 64.1 -1.1 62 262-324 268-336 (498)
45 KOG1259 Nischarin, modulator o 96.9 0.00032 7E-09 59.9 0.8 154 139-298 172-361 (490)
46 KOG0281 Beta-TrCP (transducin 96.9 0.00028 6.1E-09 60.8 0.4 38 6-43 71-112 (499)
47 KOG4658 Apoptotic ATPase [Sign 96.4 0.0015 3.2E-08 65.7 1.5 90 110-208 587-678 (889)
48 PLN03215 ascorbic acid mannose 96.4 0.0019 4.2E-08 57.7 2.1 38 8-45 2-40 (373)
49 KOG2123 Uncharacterized conser 96.3 0.00074 1.6E-08 57.1 -1.0 56 172-230 18-73 (388)
50 PF07723 LRR_2: Leucine Rich R 96.1 0.008 1.7E-07 31.5 2.8 25 174-198 1-26 (26)
51 COG5238 RNA1 Ran GTPase-activa 96.0 0.0063 1.4E-07 51.5 3.3 157 168-325 87-287 (388)
52 KOG3864 Uncharacterized conser 95.9 0.0024 5.1E-08 51.6 0.4 49 254-302 137-189 (221)
53 PRK15386 type III secretion pr 95.9 0.013 2.8E-07 53.3 4.9 137 145-320 48-187 (426)
54 KOG1859 Leucine-rich repeat pr 95.8 0.009 1.9E-07 57.3 3.9 198 86-300 52-290 (1096)
55 KOG2739 Leucine-rich acidic nu 95.8 0.00095 2.1E-08 55.9 -2.5 13 267-279 115-127 (260)
56 KOG2739 Leucine-rich acidic nu 95.6 0.0033 7.2E-08 52.7 0.1 89 141-231 35-127 (260)
57 PF12799 LRR_4: Leucine Rich r 95.6 0.008 1.7E-07 36.1 1.8 12 150-161 2-13 (44)
58 PLN03150 hypothetical protein; 95.6 0.014 2.9E-07 57.1 4.2 80 151-231 420-501 (623)
59 KOG2997 F-box protein FBX9 [Ge 95.4 0.0069 1.5E-07 52.1 1.5 38 8-45 105-147 (366)
60 KOG1644 U2-associated snRNP A' 95.4 0.02 4.4E-07 46.4 3.9 85 146-231 61-151 (233)
61 PLN03150 hypothetical protein; 95.2 0.024 5.3E-07 55.3 4.7 104 122-231 420-526 (623)
62 KOG0617 Ras suppressor protein 95.1 0.0013 2.7E-08 51.8 -3.7 60 121-187 57-116 (264)
63 smart00367 LRR_CC Leucine-rich 94.4 0.018 4E-07 30.1 0.9 20 267-286 1-20 (26)
64 COG4886 Leucine-rich repeat (L 94.4 0.036 7.7E-07 51.0 3.4 153 139-299 129-287 (394)
65 KOG2123 Uncharacterized conser 94.3 0.0034 7.4E-08 53.3 -3.2 96 121-226 20-123 (388)
66 PF12799 LRR_4: Leucine Rich r 94.2 0.029 6.3E-07 33.7 1.5 38 120-163 1-38 (44)
67 smart00367 LRR_CC Leucine-rich 93.8 0.049 1.1E-06 28.5 1.8 17 197-213 1-17 (26)
68 KOG1644 U2-associated snRNP A' 93.7 0.13 2.7E-06 41.9 4.6 36 265-300 110-151 (233)
69 KOG0274 Cdc4 and related F-box 93.2 0.037 7.9E-07 52.7 1.2 39 5-43 103-141 (537)
70 COG4886 Leucine-rich repeat (L 93.2 0.037 7.9E-07 50.9 1.1 147 121-280 141-289 (394)
71 KOG0472 Leucine-rich repeat pr 93.0 0.003 6.5E-08 56.2 -5.9 47 138-185 126-172 (565)
72 PF13516 LRR_6: Leucine Rich r 91.2 0.17 3.6E-06 25.7 1.7 23 172-194 1-23 (24)
73 KOG1859 Leucine-rich repeat pr 90.3 0.2 4.3E-06 48.6 2.4 54 242-299 187-242 (1096)
74 KOG0531 Protein phosphatase 1, 90.2 0.074 1.6E-06 49.3 -0.4 81 145-231 91-173 (414)
75 PF13504 LRR_7: Leucine rich r 88.8 0.29 6.4E-06 22.6 1.2 12 268-279 1-12 (17)
76 PF13013 F-box-like_2: F-box-l 88.2 0.25 5.5E-06 36.1 1.2 29 10-38 22-50 (109)
77 COG5238 RNA1 Ran GTPase-activa 87.9 0.69 1.5E-05 39.6 3.8 162 148-324 29-228 (388)
78 PF00560 LRR_1: Leucine Rich R 87.7 0.3 6.5E-06 24.2 1.0 18 269-287 1-18 (22)
79 KOG0531 Protein phosphatase 1, 86.0 0.14 3.1E-06 47.4 -1.4 81 145-231 114-197 (414)
80 KOG4237 Extracellular matrix p 82.8 0.76 1.7E-05 41.4 1.8 83 146-229 271-355 (498)
81 KOG3763 mRNA export factor TAP 80.9 1.6 3.4E-05 41.1 3.2 62 170-231 215-281 (585)
82 PF09372 PRANC: PRANC domain; 80.1 1.3 2.9E-05 31.6 2.0 26 8-33 70-95 (97)
83 PF13306 LRR_5: Leucine rich r 77.7 1.3 2.8E-05 33.2 1.4 77 147-228 10-89 (129)
84 smart00368 LRR_RI Leucine rich 75.4 2.8 6.1E-05 22.1 1.9 23 173-195 2-24 (28)
85 KOG0532 Leucine-rich repeat (L 72.9 0.41 8.9E-06 45.1 -2.8 32 268-300 211-245 (722)
86 KOG3926 F-box proteins [Amino 70.8 0.85 1.8E-05 38.6 -1.2 48 9-56 201-255 (332)
87 PF13306 LRR_5: Leucine rich r 68.9 15 0.00033 27.2 5.5 12 265-276 78-89 (129)
88 KOG0532 Leucine-rich repeat (L 68.4 1.5 3.3E-05 41.5 -0.2 101 120-231 143-245 (722)
89 KOG4579 Leucine-rich repeat (L 53.8 1.3 2.8E-05 34.0 -2.7 36 264-300 73-111 (177)
90 KOG3763 mRNA export factor TAP 51.4 8.7 0.00019 36.4 1.6 57 148-204 243-307 (585)
91 KOG4579 Leucine-rich repeat (L 50.9 3.7 8E-05 31.6 -0.7 46 139-185 66-112 (177)
92 KOG4408 Putative Mg2+ and Co2+ 47.0 6.3 0.00014 34.7 -0.0 40 10-49 8-47 (386)
93 PF01827 FTH: FTH domain; Int 38.1 1.2E+02 0.0027 22.7 6.1 117 73-205 3-124 (142)
94 smart00370 LRR Leucine-rich re 29.2 41 0.00088 16.9 1.4 16 268-284 2-17 (26)
95 smart00369 LRR_TYP Leucine-ric 29.2 41 0.00088 16.9 1.4 16 268-284 2-17 (26)
96 KOG2502 Tub family proteins [G 28.1 31 0.00067 30.7 1.2 39 8-46 43-89 (355)
97 KOG1665 AFH1-interacting prote 25.8 83 0.0018 26.3 3.2 40 170-209 168-207 (302)
98 PF08387 FBD: FBD; InterPro: 24.9 74 0.0016 19.4 2.2 34 173-206 14-50 (51)
99 smart00446 LRRcap occurring C- 22.1 66 0.0014 16.8 1.3 17 191-207 6-22 (26)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.2e-26 Score=189.70 Aligned_cols=276 Identities=21% Similarity=0.294 Sum_probs=190.3
Q ss_pred ccCCCchhHHHHHhcCCchhhhhhhhcccccchhhhcccceEEEeccccccccccccCcchhhHHHHHHHHHHHhhhccC
Q 040471 9 RITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCISFPILEFDQCYFLGKAITLMDISDEKKFMAFVDASLFRFCKLR 88 (340)
Q Consensus 9 ~i~~LPd~il~~Ifs~L~~~d~~~~s~vskrW~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~ 88 (340)
.|+.|||||++.||+.|+.+|+++.+.|||||+++.+ +...|+..|...+.-..+...+.+ +
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~------------de~lW~~lDl~~r~i~p~~l~~l~-~----- 158 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLAS------------DESLWQTLDLTGRNIHPDVLGRLL-S----- 158 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccc------------cccceeeeccCCCccChhHHHHHH-h-----
Confidence 3899999999999999999999999999999999876 556677677665544455556655 1
Q ss_pred cccceEEEEEeccCcCCChhhHHHHHHHHHHcCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcc
Q 040471 89 FRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTT 168 (340)
Q Consensus 89 ~~l~~l~l~~~~~~~~~~~~~l~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~ 168 (340)
..+.-|++--.. .....+..... .+...+|+++++.... ....+...+..|.+|+.|.|.|.+++++.-..
T Consensus 159 rgV~v~Rlar~~----~~~prlae~~~-~frsRlq~lDLS~s~i----t~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~ 229 (419)
T KOG2120|consen 159 RGVIVFRLARSF----MDQPRLAEHFS-PFRSRLQHLDLSNSVI----TVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT 229 (419)
T ss_pred CCeEEEEcchhh----hcCchhhhhhh-hhhhhhHHhhcchhhe----eHHHHHHHHHHHHhhhhccccccccCcHHHHH
Confidence 244444443111 11111222111 2334799999988776 56777777888999999999999998865555
Q ss_pred cccCcccceEecceEee-ChHHHHHHHhcCCCCcEEEecccCCCccc---cccc-CCCCceEEecccccc-----cceee
Q 040471 169 TIRLDSLKKLTLENVYI-NDQMFQKLTNECPSLEDFEISACWGLKNL---CVSK-AHKLKKLAIYTFYKD-----IGIVE 238 (340)
Q Consensus 169 ~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~L~~L~l~~c~~~~~~---~~~~-~~~L~~L~i~~~~~~-----~~~~~ 238 (340)
.+.-.+|+.|+++.|.. +..+++.++++|..|.+|+++.|...+.. .+.+ -++|+.|+++||... +..+.
T Consensus 230 iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~ 309 (419)
T KOG2120|consen 230 IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLV 309 (419)
T ss_pred HhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHH
Confidence 67789999999999988 99999999999999999999999764332 1111 289999999999722 22233
Q ss_pred ecCcCcceEeccCce-eeccHHHHHHHcCCCcccEEecccCCCCccccc----ccccccEEEeecCcc---hhhhccCCC
Q 040471 239 IVVPSLQQQLMLTSV-WFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKI----SSNQLKNLHFNSCEN---LKAIDTDTP 310 (340)
Q Consensus 239 ~~~p~L~~ll~l~~~-~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~----~~~~L~~L~l~~c~~---l~~~~~~~p 310 (340)
-.+|+|..| +++.+ .++++.+.. +-.++.|++|.++.|-.+..... +.|.|.+|++.||.. ++-+...+|
T Consensus 310 ~rcp~l~~L-DLSD~v~l~~~~~~~-~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~ 387 (419)
T KOG2120|consen 310 RRCPNLVHL-DLSDSVMLKNDCFQE-FFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLS 387 (419)
T ss_pred HhCCceeee-ccccccccCchHHHH-HHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHHHHHHHhCc
Confidence 367777776 55544 355544443 44567777777777766433211 246777777776643 333444455
Q ss_pred Cee
Q 040471 311 NLL 313 (340)
Q Consensus 311 ~L~ 313 (340)
+|.
T Consensus 388 ~lk 390 (419)
T KOG2120|consen 388 HLK 390 (419)
T ss_pred ccc
Confidence 554
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.77 E-value=1.1e-20 Score=163.51 Aligned_cols=259 Identities=17% Similarity=0.248 Sum_probs=155.5
Q ss_pred CCCchhHHHHHhcCCchhhhhhhhcccccchhhhcccceEEEeccccccccccccCcchh-hHHH-HHHHHHHHhhhccC
Q 040471 11 TELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCISFPILEFDQCYFLGKAITLMDISDE-KKFM-AFVDASLFRFCKLR 88 (340)
Q Consensus 11 ~~LPd~il~~Ifs~L~~~d~~~~s~vskrW~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~-~~v~~~l~~~~~~~ 88 (340)
-.||.|++++|||+|+.+.+.+++.+|+-|..+.. ++..|+++|..+. +... ..|+.++
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~Al------------D~~~~q~idL~t~~rDv~g~VV~~~~------- 133 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLAL------------DGSCWQHIDLFTFQRDVDGGVVENMI------- 133 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhh------------ccccceeeehhcchhcCCCcceehHh-------
Confidence 35999999999999999999999999999998755 6666666654321 1100 1122222
Q ss_pred cccceEEEEEeccCcCCChhhHHHHHHHHHHcCccEEEEEeecCCCCCccccCCccccCCCCccEEEeecee-CCCCC-C
Q 040471 89 FRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCR-MEQPS-D 166 (340)
Q Consensus 89 ~~l~~l~l~~~~~~~~~~~~~l~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~-~ 166 (340)
. .....+|+|.++++... ++..+......|+++++|.+.+|. +++.. .
T Consensus 134 --------------------------~-Rcgg~lk~LSlrG~r~v---~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~ 183 (483)
T KOG4341|consen 134 --------------------------S-RCGGFLKELSLRGCRAV---GDSSLRTFASNCPNIEHLALYGCKKITDSSLL 183 (483)
T ss_pred --------------------------h-hhccccccccccccccC---CcchhhHHhhhCCchhhhhhhcceeccHHHHH
Confidence 1 11135566666665542 445555555567788888777775 33322 2
Q ss_pred cccccCcccceEecceEee-ChHHHHHHHhcCCCCcEEEecccCCCccc----ccccCCCCceEEecccc-cccc---ee
Q 040471 167 TTTIRLDSLKKLTLENVYI-NDQMFQKLTNECPSLEDFEISACWGLKNL----CVSKAHKLKKLAIYTFY-KDIG---IV 237 (340)
Q Consensus 167 ~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~L~~L~l~~c~~~~~~----~~~~~~~L~~L~i~~~~-~~~~---~~ 237 (340)
.....|++|+.|++..|.. ++..++++..+||+|++|+++.|..+..- ..++|..++.+...||. .+.+ .+
T Consensus 184 sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~ 263 (483)
T KOG4341|consen 184 SLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKA 263 (483)
T ss_pred HHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHH
Confidence 2344678888888888666 77777878888888888888888665441 22345556666556665 1111 11
Q ss_pred eecCcCcceEe-------------------------ccCcee-eccHHHHHHHcCCCcccEEecccCCCCccccc-----
Q 040471 238 EIVVPSLQQQL-------------------------MLTSVW-FMDEEFDRFISKFPLLEDLLLRFCRLPEKVKI----- 286 (340)
Q Consensus 238 ~~~~p~L~~ll-------------------------~l~~~~-i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~----- 286 (340)
.-+++.+.++. ...++. +++..+..+..++++|+.|.+..|..+++.+.
T Consensus 264 ~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r 343 (483)
T KOG4341|consen 264 AAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR 343 (483)
T ss_pred hccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc
Confidence 12223333321 333332 55556666666666666666666666544433
Q ss_pred ccccccEEEeecCcch-----hhhccCCCCeeEEEEe
Q 040471 287 SSNQLKNLHFNSCENL-----KAIDTDTPNLLSFTFS 318 (340)
Q Consensus 287 ~~~~L~~L~l~~c~~l-----~~~~~~~p~L~~L~~~ 318 (340)
.++.|+.+++.+|.-. ..+...||.|+.+.++
T Consensus 344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lsls 380 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLS 380 (483)
T ss_pred CChhhhhhcccccceehhhhHhhhccCCchhccCChh
Confidence 2566666666666543 3344556777776666
No 3
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.17 E-value=9.9e-12 Score=108.57 Aligned_cols=175 Identities=18% Similarity=0.280 Sum_probs=95.6
Q ss_pred CCCccEEEeecee-CCC-CCCcccccCcccceEecceEee-ChHHHHHHHhcCCCCcEEEecccCCCccccc----ccCC
Q 040471 148 AKSMATLSLFGCR-MEQ-PSDTTTIRLDSLKKLTLENVYI-NDQMFQKLTNECPSLEDFEISACWGLKNLCV----SKAH 220 (340)
Q Consensus 148 ~~~L~~L~L~~~~-~~~-~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~----~~~~ 220 (340)
|.-+..+++..|. +.+ ..+.....+..|+.|...++.. ++..+.++..+|++|+.|.+.+|..+.+..+ .+|+
T Consensus 267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~ 346 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCP 346 (483)
T ss_pred ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCCh
Confidence 4445555555553 222 1222334566666666666665 6666666666677777777777666554432 2456
Q ss_pred CCceEEeccccc----ccceeeecCcCcceEeccCcee-eccHHHHHHH---cCCCcccEEecccCCCCcccccc----c
Q 040471 221 KLKKLAIYTFYK----DIGIVEIVVPSLQQQLMLTSVW-FMDEEFDRFI---SKFPLLEDLLLRFCRLPEKVKIS----S 288 (340)
Q Consensus 221 ~L~~L~i~~~~~----~~~~~~~~~p~L~~ll~l~~~~-i~~~~~~~l~---~~~~~L~~L~l~~c~~i~~~~~~----~ 288 (340)
.|+.+++.+|.. .+..+..++|.|+.+ .++++. |+|++...+- .+...|+.+.+++|+.+++.... |
T Consensus 347 ~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l-slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c 425 (483)
T KOG4341|consen 347 HLERLDLEECGLITDGTLASLSRNCPRLRVL-SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSIC 425 (483)
T ss_pred hhhhhcccccceehhhhHhhhccCCchhccC-ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhC
Confidence 666666666651 133344456666665 555554 5555443332 23345555666666665554332 5
Q ss_pred ccccEEEeecCcch-----hhhccCCCCeeEEEEeccCCC
Q 040471 289 NQLKNLHFNSCENL-----KAIDTDTPNLLSFTFSYDFNP 323 (340)
Q Consensus 289 ~~L~~L~l~~c~~l-----~~~~~~~p~L~~L~~~~~~~~ 323 (340)
++||++++.+|.++ ..+....|+++...+.+.+.+
T Consensus 426 ~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a~~t~ 465 (483)
T KOG4341|consen 426 RNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFAPVTP 465 (483)
T ss_pred cccceeeeechhhhhhhhhHHHHhhCccceehhhccCCCC
Confidence 66666666666554 344445566666665554333
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.15 E-value=2.3e-10 Score=118.04 Aligned_cols=180 Identities=18% Similarity=0.207 Sum_probs=98.6
Q ss_pred cCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccccc-cc
Q 040471 140 ILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCV-SK 218 (340)
Q Consensus 140 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~-~~ 218 (340)
.++..+..+++|+.|+|+++..-. ..+....+++|++|+|.+|..- ..+..-+..+++|+.|++++|..+..+.. ..
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~-~ip~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~ 702 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLK-EIPDLSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLDMSRCENLEILPTGIN 702 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcC-cCCccccCCcccEEEecCCCCc-cccchhhhccCCCCEEeCCCCCCcCccCCcCC
Confidence 344445556667777776653211 1123445677777777776531 11222345677788888887776655422 14
Q ss_pred CCCCceEEecccccccceee----------e------------cCcCcceE-----------------------------
Q 040471 219 AHKLKKLAIYTFYKDIGIVE----------I------------VVPSLQQQ----------------------------- 247 (340)
Q Consensus 219 ~~~L~~L~i~~~~~~~~~~~----------~------------~~p~L~~l----------------------------- 247 (340)
+++|+.|++++|. ....+. + .+++|+.|
T Consensus 703 l~sL~~L~Lsgc~-~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~ 781 (1153)
T PLN03210 703 LKSLYRLNLSGCS-RLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLT 781 (1153)
T ss_pred CCCCCEEeCCCCC-CccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccch
Confidence 5677777777764 111110 0 11222222
Q ss_pred -eccCceeeccHHHHHHHcCCCcccEEecccCCCCcccccc--cccccEEEeecCcchhhhccCCCCeeEEEEeccCCC
Q 040471 248 -LMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKIS--SNQLKNLHFNSCENLKAIDTDTPNLLSFTFSYDFNP 323 (340)
Q Consensus 248 -l~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~--~~~L~~L~l~~c~~l~~~~~~~p~L~~L~~~~~~~~ 323 (340)
+.+.++.... .+..-+.++++|++|++++|..++.++.. +++|++|++++|..+..+....++|+.|++.++...
T Consensus 782 ~L~Ls~n~~l~-~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~ 859 (1153)
T PLN03210 782 RLFLSDIPSLV-ELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE 859 (1153)
T ss_pred heeCCCCCCcc-ccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCc
Confidence 0111111000 12223566788888888888777666543 578888888888777655555566777777665443
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.06 E-value=9.4e-11 Score=72.65 Aligned_cols=36 Identities=33% Similarity=0.670 Sum_probs=31.9
Q ss_pred cCCCchhHHHHHhcCCchhhhhhhhcccccchhhhc
Q 040471 10 ITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCI 45 (340)
Q Consensus 10 i~~LPd~il~~Ifs~L~~~d~~~~s~vskrW~~l~~ 45 (340)
|+.||+||+.+||+||+.+|+.+++.|||+|+++..
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHC
Confidence 678999999999999999999999999999998764
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.02 E-value=9.6e-10 Score=112.51 Aligned_cols=91 Identities=20% Similarity=0.113 Sum_probs=40.0
Q ss_pred cCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccc--ccc
Q 040471 140 ILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNL--CVS 217 (340)
Q Consensus 140 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~--~~~ 217 (340)
.+|..+..+++|+.|++++|.+....+....++++|++|++.++.++... ...+..+++|++|++++|.....+ .+.
T Consensus 155 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 233 (968)
T PLN00113 155 EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI-PRELGQMKSLKWIYLGYNNLSGEIPYEIG 233 (968)
T ss_pred cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcC-ChHHcCcCCccEEECcCCccCCcCChhHh
Confidence 34444445555555555555443222223344555555555555432111 111234455555555544322111 223
Q ss_pred cCCCCceEEecccc
Q 040471 218 KAHKLKKLAIYTFY 231 (340)
Q Consensus 218 ~~~~L~~L~i~~~~ 231 (340)
.+++|++|+++++.
T Consensus 234 ~l~~L~~L~L~~n~ 247 (968)
T PLN00113 234 GLTSLNHLDLVYNN 247 (968)
T ss_pred cCCCCCEEECcCce
Confidence 34555555555443
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.01 E-value=1.2e-09 Score=111.89 Aligned_cols=173 Identities=17% Similarity=0.131 Sum_probs=93.5
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS 199 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 199 (340)
.+++.|++..+.. ...+|..+..+++|++|++++|.+....+.....+++|+.|++.++.++..... .+..+++
T Consensus 164 ~~L~~L~L~~n~l-----~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~ 237 (968)
T PLN00113 164 SSLKVLDLGGNVL-----VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY-EIGGLTS 237 (968)
T ss_pred CCCCEEECccCcc-----cccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh-hHhcCCC
Confidence 5777777765543 235677777788888888888876543444556678888888887766332222 2456778
Q ss_pred CcEEEecccCCCccc--ccccCCCCceEEecccc-cc-cceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEec
Q 040471 200 LEDFEISACWGLKNL--CVSKAHKLKKLAIYTFY-KD-IGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLL 275 (340)
Q Consensus 200 L~~L~l~~c~~~~~~--~~~~~~~L~~L~i~~~~-~~-~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l 275 (340)
|++|++++|.....+ .+..+++|+.|+++++. .+ ........++|+.+ .+.++.+++. +...+.++++|++|++
T Consensus 238 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L-~Ls~n~l~~~-~p~~~~~l~~L~~L~l 315 (968)
T PLN00113 238 LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL-DLSDNSLSGE-IPELVIQLQNLEILHL 315 (968)
T ss_pred CCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEE-ECcCCeeccC-CChhHcCCCCCcEEEC
Confidence 888888776432211 34456677777776654 11 11111234455554 4444443322 1122344555555555
Q ss_pred ccCCCCccccc---ccccccEEEeecCc
Q 040471 276 RFCRLPEKVKI---SSNQLKNLHFNSCE 300 (340)
Q Consensus 276 ~~c~~i~~~~~---~~~~L~~L~l~~c~ 300 (340)
++|...+..+. .+++|+.|++.+|.
T Consensus 316 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 343 (968)
T PLN00113 316 FSNNFTGKIPVALTSLPRLQVLQLWSNK 343 (968)
T ss_pred CCCccCCcCChhHhcCCCCCEEECcCCC
Confidence 55443222211 13455555555443
No 8
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.96 E-value=1.7e-09 Score=96.43 Aligned_cols=203 Identities=17% Similarity=0.134 Sum_probs=123.7
Q ss_pred cCccEEEEEeecCCC-CCccccCCccccCCCCccEEEeeceeCCCCCCcccccC---cccceEecceEeeChHHHHHH--
Q 040471 120 NGIKDLVLMVHNMTQ-EDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRL---DSLKKLTLENVYINDQMFQKL-- 193 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~---~~L~~L~L~~~~~~~~~l~~l-- 193 (340)
++++++++..+.... ......++..+..+++|++|++++|.+..........+ ++|+.|++.++.+++.++..+
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence 458888776543310 01122334445557789999998887653222222223 448999998888865554443
Q ss_pred -HhcC-CCCcEEEecccCCCc----cc--ccccCCCCceEEecccccc---cceee---ecCcCcceEeccCceeeccHH
Q 040471 194 -TNEC-PSLEDFEISACWGLK----NL--CVSKAHKLKKLAIYTFYKD---IGIVE---IVVPSLQQQLMLTSVWFMDEE 259 (340)
Q Consensus 194 -~~~~-p~L~~L~l~~c~~~~----~~--~~~~~~~L~~L~i~~~~~~---~~~~~---~~~p~L~~ll~l~~~~i~~~~ 259 (340)
...+ ++|++|++++|.-.. .+ .+..+++|+.|+++++.-. ...+. ...++|+.+ .+.++.+++..
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L-~L~~n~i~~~~ 209 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVL-DLNNNGLTDEG 209 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEE-eccCCccChHH
Confidence 3344 888999998885331 11 2334578888888887611 11111 134577777 77777777654
Q ss_pred ---HHHHHcCCCcccEEecccCCCCccccc-----c----cccccEEEeecCcch-------hhhccCCCCeeEEEEecc
Q 040471 260 ---FDRFISKFPLLEDLLLRFCRLPEKVKI-----S----SNQLKNLHFNSCENL-------KAIDTDTPNLLSFTFSYD 320 (340)
Q Consensus 260 ---~~~l~~~~~~L~~L~l~~c~~i~~~~~-----~----~~~L~~L~l~~c~~l-------~~~~~~~p~L~~L~~~~~ 320 (340)
+...+..+++|++|++++|. +++.++ . .+.|++|++.+|.-- .......++|+.++++++
T Consensus 210 ~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 210 ASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred HHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 34456778899999999875 443211 1 268999999888531 122233478899998887
Q ss_pred CCCC
Q 040471 321 FNPI 324 (340)
Q Consensus 321 ~~~~ 324 (340)
....
T Consensus 289 ~l~~ 292 (319)
T cd00116 289 KFGE 292 (319)
T ss_pred CCcH
Confidence 6653
No 9
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=7e-10 Score=93.24 Aligned_cols=151 Identities=21% Similarity=0.232 Sum_probs=104.9
Q ss_pred HHHHcCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCc--ccccCcccceEecceEee--ChHHHH
Q 040471 116 LAVDNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDT--TTIRLDSLKKLTLENVYI--NDQMFQ 191 (340)
Q Consensus 116 ~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~~L~~L~L~~~~~--~~~~l~ 191 (340)
.|.+.+++++++++|.+. ....+.-.+.+|+.|..|+|+.|....+.-. ...--++|+.|+++++.. .+.++.
T Consensus 230 iAkN~~L~~lnlsm~sG~---t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~ 306 (419)
T KOG2120|consen 230 IAKNSNLVRLNLSMCSGF---TENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLS 306 (419)
T ss_pred Hhccccceeecccccccc---chhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHH
Confidence 455689999999998874 4455566677899999999999975332211 223468999999999976 677899
Q ss_pred HHHhcCCCCcEEEecccCCCccc---ccccCCCCceEEeccccccc--ceeee-cCcCcceEeccCceeeccHHHHHHHc
Q 040471 192 KLTNECPSLEDFEISACWGLKNL---CVSKAHKLKKLAIYTFYKDI--GIVEI-VVPSLQQQLMLTSVWFMDEEFDRFIS 265 (340)
Q Consensus 192 ~l~~~~p~L~~L~l~~c~~~~~~---~~~~~~~L~~L~i~~~~~~~--~~~~~-~~p~L~~ll~l~~~~i~~~~~~~l~~ 265 (340)
.+...||+|.+|+++.|..+.+- .+.+++.|++|.++.|+... ..+++ ..|.|.+| ++.++ ++|..+.-+..
T Consensus 307 tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yL-dv~g~-vsdt~mel~~e 384 (419)
T KOG2120|consen 307 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYL-DVFGC-VSDTTMELLKE 384 (419)
T ss_pred HHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEE-Eeccc-cCchHHHHHHH
Confidence 99999999999999999877653 34468999999999999222 22233 35666665 22222 33444444444
Q ss_pred CCCccc
Q 040471 266 KFPLLE 271 (340)
Q Consensus 266 ~~~~L~ 271 (340)
.+|+|+
T Consensus 385 ~~~~lk 390 (419)
T KOG2120|consen 385 MLSHLK 390 (419)
T ss_pred hCcccc
Confidence 455443
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.77 E-value=3.8e-08 Score=101.85 Aligned_cols=40 Identities=28% Similarity=0.486 Sum_probs=28.6
Q ss_pred HcCCCcccEEecccCCCCcccccc---cccccEEEeecCcchh
Q 040471 264 ISKFPLLEDLLLRFCRLPEKVKIS---SNQLKNLHFNSCENLK 303 (340)
Q Consensus 264 ~~~~~~L~~L~l~~c~~i~~~~~~---~~~L~~L~l~~c~~l~ 303 (340)
+..+++|+.|++++|..+..++.. +++|+.+++.+|.++.
T Consensus 865 i~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 865 IEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred HhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 466788888888888777766554 4667777778887764
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.72 E-value=8.3e-09 Score=94.28 Aligned_cols=103 Identities=19% Similarity=0.239 Sum_probs=64.5
Q ss_pred cCccEEEEEeecCCCCCccccCCccccC-CCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFS-AKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP 198 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p 198 (340)
+.++.|+++.+.. .++|..-+. -.++++|+|+++.+.+.....+..+.+|.+|.|+.++++.=. ...+++.|
T Consensus 149 ~alrslDLSrN~i------s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp-~r~Fk~L~ 221 (873)
T KOG4194|consen 149 PALRSLDLSRNLI------SEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP-QRSFKRLP 221 (873)
T ss_pred hhhhhhhhhhchh------hcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccC-HHHhhhcc
Confidence 5677788766654 445444444 467999999988876644456667788888888888873211 33456678
Q ss_pred CCcEEEecccCC--CcccccccCCCCceEEecc
Q 040471 199 SLEDFEISACWG--LKNLCVSKAHKLKKLAIYT 229 (340)
Q Consensus 199 ~L~~L~l~~c~~--~~~~~~~~~~~L~~L~i~~ 229 (340)
+|+.|++..+.. +..+.++++++|+.|.+..
T Consensus 222 ~L~~LdLnrN~irive~ltFqgL~Sl~nlklqr 254 (873)
T KOG4194|consen 222 KLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQR 254 (873)
T ss_pred hhhhhhccccceeeehhhhhcCchhhhhhhhhh
Confidence 888888776532 2233444445555554443
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.71 E-value=1.9e-08 Score=89.60 Aligned_cols=195 Identities=16% Similarity=0.037 Sum_probs=121.5
Q ss_pred HcCccEEEEEeecCCCCCccccCCccccCC---CCccEEEeeceeCCCCCCc----ccccC-cccceEecceEeeChHH-
Q 040471 119 DNGIKDLVLMVHNMTQEDTVCILPQTIFSA---KSMATLSLFGCRMEQPSDT----TTIRL-DSLKKLTLENVYINDQM- 189 (340)
Q Consensus 119 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~---~~L~~L~L~~~~~~~~~~~----~~~~~-~~L~~L~L~~~~~~~~~- 189 (340)
.+++++|++..+... ...+..+... ++|++|++++|.+...... ....+ ++|+.|++.++.++...
T Consensus 80 ~~~L~~L~l~~~~~~-----~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 80 GCGLQELDLSDNALG-----PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred cCceeEEEccCCCCC-----hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence 368888888665441 1122222222 5599999998876531111 22345 88899999999885333
Q ss_pred --HHHHHhcCCCCcEEEecccCCCc----cc--ccccCCCCceEEecccccc---cc---eeeecCcCcceEeccCceee
Q 040471 190 --FQKLTNECPSLEDFEISACWGLK----NL--CVSKAHKLKKLAIYTFYKD---IG---IVEIVVPSLQQQLMLTSVWF 255 (340)
Q Consensus 190 --l~~l~~~~p~L~~L~l~~c~~~~----~~--~~~~~~~L~~L~i~~~~~~---~~---~~~~~~p~L~~ll~l~~~~i 255 (340)
+...+..+++|++|++++|.--. .+ .+..+++|++|++++|.-. .. ...-..|+|+.+ .+.++.+
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L-~ls~n~l 233 (319)
T cd00116 155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVL-NLGDNNL 233 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEE-ecCCCcC
Confidence 33345667889999998874321 11 1223468999999887611 11 112246778888 8888888
Q ss_pred ccHHHHHHHcC----CCcccEEecccCCCCcc--------cccccccccEEEeecCcch-------h-hhccCCCCeeEE
Q 040471 256 MDEEFDRFISK----FPLLEDLLLRFCRLPEK--------VKISSNQLKNLHFNSCENL-------K-AIDTDTPNLLSF 315 (340)
Q Consensus 256 ~~~~~~~l~~~----~~~L~~L~l~~c~~i~~--------~~~~~~~L~~L~l~~c~~l-------~-~~~~~~p~L~~L 315 (340)
++..+..+... .+.|++|++++|. +++ ....+++|+.++++++.-- . .+....++|+.+
T Consensus 234 ~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~ 312 (319)
T cd00116 234 TDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESL 312 (319)
T ss_pred chHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhc
Confidence 88766665544 4799999999875 332 1122478999999876542 2 222233788888
Q ss_pred EEecc
Q 040471 316 TFSYD 320 (340)
Q Consensus 316 ~~~~~ 320 (340)
++.++
T Consensus 313 ~~~~~ 317 (319)
T cd00116 313 WVKDD 317 (319)
T ss_pred ccCCC
Confidence 87664
No 13
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.67 E-value=5.1e-09 Score=65.18 Aligned_cols=37 Identities=38% Similarity=0.718 Sum_probs=31.8
Q ss_pred ccCCCchhHHHHHhcCCchhhhhhhhcccccchhhhc
Q 040471 9 RITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCI 45 (340)
Q Consensus 9 ~i~~LPd~il~~Ifs~L~~~d~~~~s~vskrW~~l~~ 45 (340)
+|++||+|++.+||+||+.+|+++++.|||+|+.+..
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~ 38 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVD 38 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHT
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHc
Confidence 4788999999999999999999999999999999866
No 14
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.2e-08 Score=90.12 Aligned_cols=109 Identities=20% Similarity=0.134 Sum_probs=69.0
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCc-ccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDT-TTIRLDSLKKLTLENVYINDQMFQKLTNECP 198 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p 198 (340)
+++++|+++.+-.. ....+.......++|+.|+|+.+.+..+... ....++.||+|.+.+|.++...+..++..||
T Consensus 146 ~~v~~LdLS~NL~~---nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFH---NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred CcceeecchhhhHH---hHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 46666666543321 1223333444567888888887765442221 2235788888888888888888888888888
Q ss_pred CCcEEEecccCCCccc--ccccCCCCceEEecccc
Q 040471 199 SLEDFEISACWGLKNL--CVSKAHKLKKLAIYTFY 231 (340)
Q Consensus 199 ~L~~L~l~~c~~~~~~--~~~~~~~L~~L~i~~~~ 231 (340)
+|+.|.+.++..+..- .-.-+..|+.|+++++.
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~ 257 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNN 257 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCc
Confidence 8888888887543211 11124678888888766
No 15
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.49 E-value=6e-08 Score=58.04 Aligned_cols=33 Identities=33% Similarity=0.545 Sum_probs=31.4
Q ss_pred CchhHHHHHhcCCchhhhhhhhcccccchhhhc
Q 040471 13 LPTFIIHHIMSYLSAKEIARTSILSKRWCLFCI 45 (340)
Q Consensus 13 LPd~il~~Ifs~L~~~d~~~~s~vskrW~~l~~ 45 (340)
||+|++.+||++|+.+|+.+++.|||+|+.+..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~ 33 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLID 33 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999999765
No 16
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1e-07 Score=84.33 Aligned_cols=174 Identities=20% Similarity=0.155 Sum_probs=115.4
Q ss_pred CCCCccEEEeeceeCCCCCC-cccccCcccceEecceEee-ChHHHHHHHhcCCCCcEEEecccCCC---cccccccCCC
Q 040471 147 SAKSMATLSLFGCRMEQPSD-TTTIRLDSLKKLTLENVYI-NDQMFQKLTNECPSLEDFEISACWGL---KNLCVSKAHK 221 (340)
Q Consensus 147 ~~~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~L~~L~l~~c~~~---~~~~~~~~~~ 221 (340)
+.++|+...|.++.+..+.. .....|++++.|+|+.+-+ ....+..++..+|+|+.|+++.+.-. .......+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 35678888888877655332 2445799999999999888 77888899999999999999876432 1111224688
Q ss_pred CceEEecccc---cccceeeecCcCcceEeccCcee-eccHHHHHHHcCCCcccEEecccCCCCccccc----ccccccE
Q 040471 222 LKKLAIYTFY---KDIGIVEIVVPSLQQQLMLTSVW-FMDEEFDRFISKFPLLEDLLLRFCRLPEKVKI----SSNQLKN 293 (340)
Q Consensus 222 L~~L~i~~~~---~~~~~~~~~~p~L~~ll~l~~~~-i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~----~~~~L~~ 293 (340)
|+.|.++.|. .....+...+|.|+.| .+.+.. +...... ..-+..|++|+|+++..++.... .+|.|+.
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L-~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVL-YLEANEIILIKATS--TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHh-hhhcccccceecch--hhhhhHHhhccccCCcccccccccccccccchhh
Confidence 9999999987 3445556678888887 444432 1111111 11235688889988776654322 2688888
Q ss_pred EEeecCcch---------hhhccCCCCeeEEEEeccCCC
Q 040471 294 LHFNSCENL---------KAIDTDTPNLLSFTFSYDFNP 323 (340)
Q Consensus 294 L~l~~c~~l---------~~~~~~~p~L~~L~~~~~~~~ 323 (340)
|++..|.-- .......|+|++|++..+...
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 888766532 122334589999999886553
No 17
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.39 E-value=1.5e-07 Score=88.72 Aligned_cols=109 Identities=23% Similarity=0.291 Sum_probs=69.9
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeece-eC--CCC--CCcccccCcccceEecceEe-eChHHHHHH
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGC-RM--EQP--SDTTTIRLDSLKKLTLENVY-INDQMFQKL 193 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~--~~~--~~~~~~~~~~L~~L~L~~~~-~~~~~l~~l 193 (340)
++++++.+..+... .+..+-.....|++|+.|.+++| .. ..+ .......+++|+.|++..+. +++.++..+
T Consensus 188 ~~L~~l~l~~~~~~---~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKI---TDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred chhhHhhhcccccC---ChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 56777776555431 12224444556788888888763 21 111 11233456888888888887 488888888
Q ss_pred HhcCCCCcEEEecccCCCccccc----ccCCCCceEEecccc
Q 040471 194 TNECPSLEDFEISACWGLKNLCV----SKAHKLKKLAIYTFY 231 (340)
Q Consensus 194 ~~~~p~L~~L~l~~c~~~~~~~~----~~~~~L~~L~i~~~~ 231 (340)
+..||+|+.|.+.+|..+++.++ .+|+.|++|++.+|.
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 88888888888777876554432 346778888888776
No 18
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.29 E-value=4.6e-07 Score=85.43 Aligned_cols=129 Identities=23% Similarity=0.323 Sum_probs=87.8
Q ss_pred cCcccceEecceEee-ChHHHHHHHhcCCCCcEEEeccc-CCCccc------ccccCCCCceEEecccc----cccceee
Q 040471 171 RLDSLKKLTLENVYI-NDQMFQKLTNECPSLEDFEISAC-WGLKNL------CVSKAHKLKKLAIYTFY----KDIGIVE 238 (340)
Q Consensus 171 ~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~L~~L~l~~c-~~~~~~------~~~~~~~L~~L~i~~~~----~~~~~~~ 238 (340)
.+++|+.|.+.++.. ++.++..+...||+|++|++++| ...... ....|++|+.|++..|. .++..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 478888888888766 66667777888888888888873 222111 12346778888887776 2223333
Q ss_pred ecCcCcceEeccCcee-eccHHHHHHHcCCCcccEEecccCCCCccc-----ccccccccEEEeecCc
Q 040471 239 IVVPSLQQQLMLTSVW-FMDEEFDRFISKFPLLEDLLLRFCRLPEKV-----KISSNQLKNLHFNSCE 300 (340)
Q Consensus 239 ~~~p~L~~ll~l~~~~-i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~-----~~~~~~L~~L~l~~c~ 300 (340)
..+|+|+.+. +.++. ++++++..+...|++|++|++++|..+++. ...|++|+.|.+..+.
T Consensus 266 ~~c~~L~~L~-l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~ 332 (482)
T KOG1947|consen 266 SRCPNLETLS-LSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN 332 (482)
T ss_pred hhCCCcceEc-cCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC
Confidence 3477777774 66665 888888888888999999999988886543 3336777776654443
No 19
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.26 E-value=6e-08 Score=88.80 Aligned_cols=13 Identities=31% Similarity=0.534 Sum_probs=5.6
Q ss_pred cCcccceEecceE
Q 040471 171 RLDSLKKLTLENV 183 (340)
Q Consensus 171 ~~~~L~~L~L~~~ 183 (340)
.+.++++|+|..+
T Consensus 267 ~l~kme~l~L~~N 279 (873)
T KOG4194|consen 267 GLEKMEHLNLETN 279 (873)
T ss_pred eecccceeecccc
Confidence 3444444444443
No 20
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.23 E-value=2.1e-06 Score=68.71 Aligned_cols=101 Identities=21% Similarity=0.221 Sum_probs=36.8
Q ss_pred CccEEEEEeecCCCCCccccCCcccc-CCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471 121 GIKDLVLMVHNMTQEDTVCILPQTIF-SAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS 199 (340)
Q Consensus 121 ~l~~L~l~~~~~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 199 (340)
++++|++..+.. ..+. .+. .+.+|+.|++++|.+.. ......++.|++|+++++.++.-. +.+...+|+
T Consensus 20 ~~~~L~L~~n~I------~~Ie-~L~~~l~~L~~L~Ls~N~I~~--l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~ 89 (175)
T PF14580_consen 20 KLRELNLRGNQI------STIE-NLGATLDKLEVLDLSNNQITK--LEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-C-HHHHHH-TT
T ss_pred cccccccccccc------cccc-chhhhhcCCCEEECCCCCCcc--ccCccChhhhhhcccCCCCCCccc-cchHHhCCc
Confidence 568888877655 2232 233 46789999999998765 234567899999999999883210 233456899
Q ss_pred CcEEEecccCC--Cccc-ccccCCCCceEEecccc
Q 040471 200 LEDFEISACWG--LKNL-CVSKAHKLKKLAIYTFY 231 (340)
Q Consensus 200 L~~L~l~~c~~--~~~~-~~~~~~~L~~L~i~~~~ 231 (340)
|++|.++++.- +..+ .+..+|+|+.|.+.+++
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence 99999987633 3333 34568999999998877
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.13 E-value=5.6e-07 Score=72.05 Aligned_cols=78 Identities=19% Similarity=0.193 Sum_probs=15.5
Q ss_pred CCCccEEEeeceeCCCCCCcccccCcccceEecceEee-ChHHHHHHHhcCCCCcEEEecccCCCccc--cc-ccCCCCc
Q 040471 148 AKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYI-NDQMFQKLTNECPSLEDFEISACWGLKNL--CV-SKAHKLK 223 (340)
Q Consensus 148 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~L~~L~l~~c~~~~~~--~~-~~~~~L~ 223 (340)
+.+++.|+|.|+.+..-. .....+.+|+.|+++++.+ .-++ +..++.|++|.+++..-. .+ .+ ..+|+|+
T Consensus 18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~----l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEG----LPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ 91 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT--------TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccccccc-chhhhhcCCCEEECCCCCCccccC----ccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence 445666666666554310 1122456666666666655 2222 223555666655554221 11 11 1345555
Q ss_pred eEEecccc
Q 040471 224 KLAIYTFY 231 (340)
Q Consensus 224 ~L~i~~~~ 231 (340)
+|.++++.
T Consensus 92 ~L~L~~N~ 99 (175)
T PF14580_consen 92 ELYLSNNK 99 (175)
T ss_dssp EEE-TTS-
T ss_pred EEECcCCc
Confidence 55555443
No 22
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.08 E-value=2.5e-06 Score=73.67 Aligned_cols=226 Identities=16% Similarity=0.113 Sum_probs=104.9
Q ss_pred cccceEEEEEeccCcCCChhhHHHHHHHHHH--cCccEEEEEeecCCCCCccccCCcc-------ccCCCCccEEEeece
Q 040471 89 FRMQELRLFQSFLDVKGSAPLLDKWIGLAVD--NGIKDLVLMVHNMTQEDTVCILPQT-------IFSAKSMATLSLFGC 159 (340)
Q Consensus 89 ~~l~~l~l~~~~~~~~~~~~~l~~~l~~~~~--~~l~~L~l~~~~~~~~~~~~~l~~~-------~~~~~~L~~L~L~~~ 159 (340)
..+++++++-. .-.....+|+..... +.+++.+++--. .++.-.++|.. +..|+.|++|+||.+
T Consensus 30 ~s~~~l~lsgn-----t~G~EAa~~i~~~L~~~~~L~~v~~sd~f--tGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 30 DSLTKLDLSGN-----TFGTEAARAIAKVLASKKELREVNLSDMF--TGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred CceEEEeccCC-----chhHHHHHHHHHHHhhcccceeeehHhhh--cCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 45666666422 122356778776554 455555552211 11122334433 334666777777666
Q ss_pred eCCCCCCcc----cccCcccceEecceEeeChHHHHH------------HHhcCCCCcEEEecccCCC----cc--cccc
Q 040471 160 RMEQPSDTT----TIRLDSLKKLTLENVYINDQMFQK------------LTNECPSLEDFEISACWGL----KN--LCVS 217 (340)
Q Consensus 160 ~~~~~~~~~----~~~~~~L~~L~L~~~~~~~~~l~~------------l~~~~p~L~~L~l~~c~~~----~~--~~~~ 217 (340)
.++...++. ...+.+|+.|.|.+|.+...+=.. .+..-|+|+.+....+.-- +. ..+.
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~ 182 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ 182 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence 654433221 224566666666666552222111 1223345555544433210 00 1223
Q ss_pred cCCCCceEEeccccccccee------eecCcCcceEeccCceeeccH---HHHHHHcCCCcccEEecccCCCC-------
Q 040471 218 KAHKLKKLAIYTFYKDIGIV------EIVVPSLQQQLMLTSVWFMDE---EFDRFISKFPLLEDLLLRFCRLP------- 281 (340)
Q Consensus 218 ~~~~L~~L~i~~~~~~~~~~------~~~~p~L~~ll~l~~~~i~~~---~~~~l~~~~~~L~~L~l~~c~~i------- 281 (340)
.+|.|+.+++..+......+ ..++|+|+.| ++..+.++.+ .+...++.+|.|++|.++.|-.-
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevL-dl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVL-DLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF 261 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceee-ecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence 34666666665544222222 1245666665 5555554433 23344555566666666665431
Q ss_pred -cccccccccccEEEeecCcch----hhh---ccCCCCeeEEEEeccCC
Q 040471 282 -EKVKISSNQLKNLHFNSCENL----KAI---DTDTPNLLSFTFSYDFN 322 (340)
Q Consensus 282 -~~~~~~~~~L~~L~l~~c~~l----~~~---~~~~p~L~~L~~~~~~~ 322 (340)
..+....|+|+.|.+.+|.-- ..+ ...-|.|..|.++|+..
T Consensus 262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 111222466666666665432 000 01136666666666555
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.08 E-value=1.7e-05 Score=77.77 Aligned_cols=12 Identities=17% Similarity=0.169 Sum_probs=7.4
Q ss_pred CCCceEEecccc
Q 040471 220 HKLKKLAIYTFY 231 (340)
Q Consensus 220 ~~L~~L~i~~~~ 231 (340)
++|+.|+++++.
T Consensus 302 ~~L~~LdLS~N~ 313 (788)
T PRK15387 302 PGLQELSVSDNQ 313 (788)
T ss_pred cccceeECCCCc
Confidence 566666666554
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.01 E-value=2.3e-05 Score=76.76 Aligned_cols=180 Identities=16% Similarity=0.129 Sum_probs=104.3
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS 199 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 199 (340)
.+-..|++..+. ...+|..+. ++|+.|.+.++.+.. .....++|++|+++++.++. + -...++
T Consensus 201 ~~~~~LdLs~~~------LtsLP~~l~--~~L~~L~L~~N~Lt~----LP~lp~~Lk~LdLs~N~Lts--L---P~lp~s 263 (788)
T PRK15387 201 NGNAVLNVGESG------LTTLPDCLP--AHITTLVIPDNNLTS----LPALPPELRTLEVSGNQLTS--L---PVLPPG 263 (788)
T ss_pred CCCcEEEcCCCC------CCcCCcchh--cCCCEEEccCCcCCC----CCCCCCCCcEEEecCCccCc--c---cCcccc
Confidence 345566665443 356777664 479999999987764 12246899999999987631 1 123578
Q ss_pred CcEEEecccCCCcccccccCCCCceEEecccccccceeeecCcCcceEeccCceeecc---------------HHHHHHH
Q 040471 200 LEDFEISACWGLKNLCVSKAHKLKKLAIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMD---------------EEFDRFI 264 (340)
Q Consensus 200 L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~p~L~~ll~l~~~~i~~---------------~~~~~l~ 264 (340)
|++|++.++. +..+.- ..++|+.|.+.++. +..+....|+|+.| +++++.++. +.+..+.
T Consensus 264 L~~L~Ls~N~-L~~Lp~-lp~~L~~L~Ls~N~--Lt~LP~~p~~L~~L-dLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP 338 (788)
T PRK15387 264 LLELSIFSNP-LTHLPA-LPSGLCKLWIFGNQ--LTSLPVLPPGLQEL-SVSDNQLASLPALPSELCKLWAYNNQLTSLP 338 (788)
T ss_pred cceeeccCCc-hhhhhh-chhhcCEEECcCCc--ccccccccccccee-ECCCCccccCCCCcccccccccccCcccccc
Confidence 9999998874 332211 13578889888775 22233334667776 444444332 1111111
Q ss_pred cCCCcccEEecccCCCCcccccccccccEEEeecCcchhhhccCCCCeeEEEEeccCCC
Q 040471 265 SKFPLLEDLLLRFCRLPEKVKISSNQLKNLHFNSCENLKAIDTDTPNLLSFTFSYDFNP 323 (340)
Q Consensus 265 ~~~~~L~~L~l~~c~~i~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~~~~~~~~ 323 (340)
...++|++|++++|. ++.++...++|+.|.+.++. +..+....++|+.|++.++...
T Consensus 339 ~lp~~Lq~LdLS~N~-Ls~LP~lp~~L~~L~Ls~N~-L~~LP~l~~~L~~LdLs~N~Lt 395 (788)
T PRK15387 339 TLPSGLQELSVSDNQ-LASLPTLPSELYKLWAYNNR-LTSLPALPSGLKELIVSGNRLT 395 (788)
T ss_pred ccccccceEecCCCc-cCCCCCCCcccceehhhccc-cccCcccccccceEEecCCccc
Confidence 112357777777543 55554445566666665532 3334333457788888776544
No 25
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.00 E-value=4.2e-06 Score=81.33 Aligned_cols=126 Identities=16% Similarity=0.215 Sum_probs=80.8
Q ss_pred CCccEEEeecee-CCCCCC-cccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcccccccCCCCceEE
Q 040471 149 KSMATLSLFGCR-MEQPSD-TTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLA 226 (340)
Q Consensus 149 ~~L~~L~L~~~~-~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~~L~~L~ 226 (340)
.+|++|+++|.. +...+. ....-||+|+.|.+.+..+..+.+..+..++|+|..|+++++..-.-.++.++++|+.|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 578888888854 333222 234468999999999998866668888899999999999987432223566677777777
Q ss_pred ecccccccceeeecCcCcceEeccCceeecc-HHHHHHHcCCCcccEEecccCCCCccc---------ccccccccEEEe
Q 040471 227 IYTFYKDIGIVEIVVPSLQQQLMLTSVWFMD-EEFDRFISKFPLLEDLLLRFCRLPEKV---------KISSNQLKNLHF 296 (340)
Q Consensus 227 i~~~~~~~~~~~~~~p~L~~ll~l~~~~i~~-~~~~~l~~~~~~L~~L~l~~c~~i~~~---------~~~~~~L~~L~l 296 (340)
+.+-. +.. ..+.+ +-++.+|+.||+|.-+..... +...|+||.|+.
T Consensus 202 mrnLe-----------------------~e~~~~l~~-LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDc 257 (699)
T KOG3665|consen 202 MRNLE-----------------------FESYQDLID-LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDC 257 (699)
T ss_pred ccCCC-----------------------CCchhhHHH-HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEec
Confidence 76443 221 22333 234677777777754442221 222467777776
Q ss_pred ec
Q 040471 297 NS 298 (340)
Q Consensus 297 ~~ 298 (340)
++
T Consensus 258 Sg 259 (699)
T KOG3665|consen 258 SG 259 (699)
T ss_pred CC
Confidence 64
No 26
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.98 E-value=2.1e-07 Score=86.07 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=32.8
Q ss_pred CccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEee
Q 040471 121 GIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYI 185 (340)
Q Consensus 121 ~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 185 (340)
.++.+.++.+.- ....+|..++..+.|+.|+|+.+.+... +.....-.++-.|+|+++.+
T Consensus 79 ~LRsv~~R~N~L----KnsGiP~diF~l~dLt~lDLShNqL~Ev-P~~LE~AKn~iVLNLS~N~I 138 (1255)
T KOG0444|consen 79 RLRSVIVRDNNL----KNSGIPTDIFRLKDLTILDLSHNQLREV-PTNLEYAKNSIVLNLSYNNI 138 (1255)
T ss_pred hhHHHhhhcccc----ccCCCCchhcccccceeeecchhhhhhc-chhhhhhcCcEEEEcccCcc
Confidence 444444433333 4456777777777777777777654320 11223335566666666654
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.95 E-value=5.8e-06 Score=71.46 Aligned_cols=179 Identities=16% Similarity=0.128 Sum_probs=118.8
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCc-------------ccccCcccceEecceEee-
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDT-------------TTIRLDSLKKLTLENVYI- 185 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~-------------~~~~~~~L~~L~L~~~~~- 185 (340)
+.++.|+|+-+-. ...+...+...+.+|.+|++|.|.+|-+++.... .+..-+.|+++...+++.
T Consensus 92 ~~L~~ldLSDNA~-G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 92 PKLQKLDLSDNAF-GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CceeEeecccccc-CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 4788888854432 1123344455567799999999999987552211 123458899999999988
Q ss_pred C--hHHHHHHHhcCCCCcEEEecccCC----Ccc--cccccCCCCceEEecccccc---cceeee---cCcCcceEeccC
Q 040471 186 N--DQMFQKLTNECPSLEDFEISACWG----LKN--LCVSKAHKLKKLAIYTFYKD---IGIVEI---VVPSLQQQLMLT 251 (340)
Q Consensus 186 ~--~~~l~~l~~~~p~L~~L~l~~c~~----~~~--~~~~~~~~L~~L~i~~~~~~---~~~~~~---~~p~L~~ll~l~ 251 (340)
+ -..+...+..+|.|+++.+..... ++. ..+..||+|+.|++..+... -..+.. ..|+|+.+ .+.
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El-~l~ 249 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL-NLG 249 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee-ccc
Confidence 2 344566678899999999988743 211 13456899999999987511 111222 34456665 888
Q ss_pred ceeeccHHH----HHHHcCCCcccEEecccCCCCcccccc--------cccccEEEeecCcc
Q 040471 252 SVWFMDEEF----DRFISKFPLLEDLLLRFCRLPEKVKIS--------SNQLKNLHFNSCEN 301 (340)
Q Consensus 252 ~~~i~~~~~----~~l~~~~~~L~~L~l~~c~~i~~~~~~--------~~~L~~L~l~~c~~ 301 (340)
+|-+.+.+- ..+-...|+|+.|.+.+|. |+..+.. -|.|+.|++.+|..
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 888776532 3344668999999999876 3322111 58999999998864
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.68 E-value=0.00014 Score=71.53 Aligned_cols=75 Identities=15% Similarity=0.193 Sum_probs=32.9
Q ss_pred CCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcccccccCCCCceEEec
Q 040471 149 KSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLAIY 228 (340)
Q Consensus 149 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~~L~~L~i~ 228 (340)
++|+.|++++|.+.. . +. .-.++|+.|+|+++.+..- -..+ ..+|+.|+++++ .+..+.-.-.++|+.|+++
T Consensus 220 ~nL~~L~Ls~N~Lts-L-P~-~l~~~L~~L~Ls~N~L~~L-P~~l---~s~L~~L~Ls~N-~L~~LP~~l~~sL~~L~Ls 291 (754)
T PRK15370 220 GNIKTLYANSNQLTS-I-PA-TLPDTIQEMELSINRITEL-PERL---PSALQSLDLFHN-KISCLPENLPEELRYLSVY 291 (754)
T ss_pred cCCCEEECCCCcccc-C-Ch-hhhccccEEECcCCccCcC-ChhH---hCCCCEEECcCC-ccCccccccCCCCcEEECC
Confidence 356666666554432 1 10 1123566666665554210 0011 135666666643 2322211112466666666
Q ss_pred ccc
Q 040471 229 TFY 231 (340)
Q Consensus 229 ~~~ 231 (340)
++.
T Consensus 292 ~N~ 294 (754)
T PRK15370 292 DNS 294 (754)
T ss_pred CCc
Confidence 654
No 29
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.62 E-value=4.9e-06 Score=80.42 Aligned_cols=125 Identities=20% Similarity=0.210 Sum_probs=71.8
Q ss_pred CcccceEecceEeeChHHHHHHHhcCCCCcEEEeccc--CCCcccccccCCCCceEEecccc-cccceeeecCcCcceEe
Q 040471 172 LDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISAC--WGLKNLCVSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQL 248 (340)
Q Consensus 172 ~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c--~~~~~~~~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll 248 (340)
.+.|+.|.+.+++++|+.+.. +.+.++|+.|+++++ ..+....+.+++.|+.|.++|+. ..+......++.|+.|
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL- 435 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPV-LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTL- 435 (1081)
T ss_pred hHHHHHHHHhcCcccccchhh-hccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHH-
Confidence 455666666666666655544 456777777777776 33444455566777777777765 2222222245555555
Q ss_pred ccCceeeccHHHHHHHcCCCcccEEecccCCCCcccccc----cccccEEEeecCcch
Q 040471 249 MLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKIS----SNQLKNLHFNSCENL 302 (340)
Q Consensus 249 ~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~----~~~L~~L~l~~c~~l 302 (340)
...+..+.. +. -+...|.|+.+|++ |..++...+. .|+||+|+++|..++
T Consensus 436 ~ahsN~l~~--fP-e~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 436 RAHSNQLLS--FP-ELAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hhcCCceee--ch-hhhhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCccc
Confidence 333322211 11 13456888888888 4555544333 378888888887754
No 30
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.59 E-value=1.7e-06 Score=80.25 Aligned_cols=39 Identities=28% Similarity=0.284 Sum_probs=24.4
Q ss_pred HcCCCcccEEecccCCCCc-ccccc-cccccEEEeecCcch
Q 040471 264 ISKFPLLEDLLLRFCRLPE-KVKIS-SNQLKNLHFNSCENL 302 (340)
Q Consensus 264 ~~~~~~L~~L~l~~c~~i~-~~~~~-~~~L~~L~l~~c~~l 302 (340)
+..|++|+.|.++++..|+ ..++. .+.|+.|++...+++
T Consensus 335 lcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 335 LCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCc
Confidence 4557777777777555443 11222 477788888877776
No 31
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.54 E-value=5.9e-05 Score=74.20 Aligned_cols=74 Identities=18% Similarity=0.170 Sum_probs=39.2
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS 199 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 199 (340)
.+++.|++..+.. ..+|..+. ++|+.|+|++|.+.. .+.. -..+|+.|+++++.++. +.. .-+++
T Consensus 220 ~nL~~L~Ls~N~L------tsLP~~l~--~~L~~L~Ls~N~L~~-LP~~--l~s~L~~L~Ls~N~L~~--LP~--~l~~s 284 (754)
T PRK15370 220 GNIKTLYANSNQL------TSIPATLP--DTIQEMELSINRITE-LPER--LPSALQSLDLFHNKISC--LPE--NLPEE 284 (754)
T ss_pred cCCCEEECCCCcc------ccCChhhh--ccccEEECcCCccCc-CChh--HhCCCCEEECcCCccCc--ccc--ccCCC
Confidence 3566666654332 34554332 467788887776543 1111 12467777777665521 111 12346
Q ss_pred CcEEEeccc
Q 040471 200 LEDFEISAC 208 (340)
Q Consensus 200 L~~L~l~~c 208 (340)
|+.|++++|
T Consensus 285 L~~L~Ls~N 293 (754)
T PRK15370 285 LRYLSVYDN 293 (754)
T ss_pred CcEEECCCC
Confidence 777777765
No 32
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.53 E-value=8.9e-05 Score=72.24 Aligned_cols=155 Identities=14% Similarity=0.144 Sum_probs=83.4
Q ss_pred HHHHHcCccEEEEEeecCCCCCccccCCccccC-CCCccEEEeeceeCCC-CCCcccccCcccceEecceEee-ChHHHH
Q 040471 115 GLAVDNGIKDLVLMVHNMTQEDTVCILPQTIFS-AKSMATLSLFGCRMEQ-PSDTTTIRLDSLKKLTLENVYI-NDQMFQ 191 (340)
Q Consensus 115 ~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~-~~~~l~ 191 (340)
..-...++++|++++... -...-|..++. +|+|++|.++|-.+.. .+...-.+||+|..|+++++.+ +-
T Consensus 117 n~~sr~nL~~LdI~G~~~----~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---- 188 (699)
T KOG3665|consen 117 NEESRQNLQHLDISGSEL----FSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---- 188 (699)
T ss_pred hHHHHHhhhhcCccccch----hhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc----
Confidence 334445777777755332 11222222322 5667777777654422 2223334677777777777665 22
Q ss_pred HHHhcCCCCcEEEecccCCCc---ccccccCCCCceEEecccccccce-e-------eecCcCcceEeccCceeeccHHH
Q 040471 192 KLTNECPSLEDFEISACWGLK---NLCVSKAHKLKKLAIYTFYKDIGI-V-------EIVVPSLQQQLMLTSVWFMDEEF 260 (340)
Q Consensus 192 ~l~~~~p~L~~L~l~~c~~~~---~~~~~~~~~L~~L~i~~~~~~~~~-~-------~~~~p~L~~ll~l~~~~i~~~~~ 260 (340)
.-.+..++|+.|.+.+-.--. -..+-.+.+|+.|+|+........ + .-.+|+|+.+ +.++..++.+.+
T Consensus 189 ~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfL-DcSgTdi~~~~l 267 (699)
T KOG3665|consen 189 SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFL-DCSGTDINEEIL 267 (699)
T ss_pred HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEE-ecCCcchhHHHH
Confidence 223445666666555432111 012234567777777765411111 1 1246777776 667777888888
Q ss_pred HHHHcCCCcccEEecccC
Q 040471 261 DRFISKFPLLEDLLLRFC 278 (340)
Q Consensus 261 ~~l~~~~~~L~~L~l~~c 278 (340)
..+...=|+|+.+.+-.|
T Consensus 268 e~ll~sH~~L~~i~~~~~ 285 (699)
T KOG3665|consen 268 EELLNSHPNLQQIAALDC 285 (699)
T ss_pred HHHHHhCccHhhhhhhhh
Confidence 887777777777765543
No 33
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.00013 Score=62.17 Aligned_cols=86 Identities=14% Similarity=0.179 Sum_probs=62.6
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS 199 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 199 (340)
..++++++..+... .-.++...+.+.+.|+.|+|+.+.+..+.........+|++|.|.+...+...........|.
T Consensus 71 ~~v~elDL~~N~iS---dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 71 TDVKELDLTGNLIS---DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred hhhhhhhcccchhc---cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 57788888655431 234555566678889999998887765433333566789999998888877788888888888
Q ss_pred CcEEEeccc
Q 040471 200 LEDFEISAC 208 (340)
Q Consensus 200 L~~L~l~~c 208 (340)
+++|.++.+
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 888877765
No 34
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.27 E-value=1.8e-05 Score=76.58 Aligned_cols=128 Identities=16% Similarity=0.121 Sum_probs=85.0
Q ss_pred CCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcc--cccccCCCCceE
Q 040471 148 AKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKN--LCVSKAHKLKKL 225 (340)
Q Consensus 148 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~--~~~~~~~~L~~L 225 (340)
.+.|+.|.+.++.+++..++...+++.||.|+|++++.+.-. ..-....+.||+|.++|+.- +. .++..|+.|+.|
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fp-as~~~kle~LeeL~LSGNkL-~~Lp~tva~~~~L~tL 435 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFP-ASKLRKLEELEELNLSGNKL-TTLPDTVANLGRLHTL 435 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCC-HHHHhchHHhHHHhcccchh-hhhhHHHHhhhhhHHH
Confidence 456888888889888888888899999999999999773111 11245678899999998743 22 245567788887
Q ss_pred Eecccccccceeee-cCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCC
Q 040471 226 AIYTFYKDIGIVEI-VVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRL 280 (340)
Q Consensus 226 ~i~~~~~~~~~~~~-~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~ 280 (340)
...++. .....++ ..|.|+.+ +++...++.-.+...... |+|++|+++++..
T Consensus 436 ~ahsN~-l~~fPe~~~l~qL~~l-DlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 436 RAHSNQ-LLSFPELAQLPQLKVL-DLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred hhcCCc-eeechhhhhcCcceEE-ecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 766554 1111122 35555555 666666555444432222 8999999998875
No 35
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.23 E-value=3.7e-06 Score=65.65 Aligned_cols=162 Identities=17% Similarity=0.189 Sum_probs=88.8
Q ss_pred cccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCC-CcccccccCCCC
Q 040471 144 TIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWG-LKNLCVSKAHKL 222 (340)
Q Consensus 144 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~-~~~~~~~~~~~L 222 (340)
.++...+++.|.|+.+.+.. .++..+.+.+|+.|++.++++. .+..-.++.|+|+.|++....- ...-++.++|-|
T Consensus 28 gLf~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie--~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPAL 104 (264)
T ss_pred cccchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh--hcChhhhhchhhhheecchhhhhcCccccCCCchh
Confidence 35556677777777766543 2356677777888877776542 1222245677777777764321 112245567788
Q ss_pred ceEEecccc---cccceeeecCcCcceEeccCceeeccHHHHH---HHcCCCcccEEecccCCCCcccccc---cccccE
Q 040471 223 KKLAIYTFY---KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDR---FISKFPLLEDLLLRFCRLPEKVKIS---SNQLKN 293 (340)
Q Consensus 223 ~~L~i~~~~---~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~---l~~~~~~L~~L~l~~c~~i~~~~~~---~~~L~~ 293 (340)
+.|++.+.. ..+..-.+....|+.+ .++|++|.. -+..+.+|+.|.++.+..+ .++.. ..+|++
T Consensus 105 evldltynnl~e~~lpgnff~m~tlral------yl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lre 177 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRAL------YLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRE 177 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHH------HhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHH
Confidence 888877655 1111112222223322 233333332 2456788888888876543 22222 356777
Q ss_pred EEeecCcchhhhccCCCCeeEEEEec
Q 040471 294 LHFNSCENLKAIDTDTPNLLSFTFSY 319 (340)
Q Consensus 294 L~l~~c~~l~~~~~~~p~L~~L~~~~ 319 (340)
|.+.|.. +..-.|.|-.+++-|
T Consensus 178 lhiqgnr----l~vlppel~~l~l~~ 199 (264)
T KOG0617|consen 178 LHIQGNR----LTVLPPELANLDLVG 199 (264)
T ss_pred Hhcccce----eeecChhhhhhhhhh
Confidence 7776653 334456666665555
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.21 E-value=0.00021 Score=60.92 Aligned_cols=59 Identities=15% Similarity=0.128 Sum_probs=40.1
Q ss_pred cCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcccccccCCCCceEEecccc
Q 040471 171 RLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLAIYTFY 231 (340)
Q Consensus 171 ~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~ 231 (340)
.+..|++++|+++.++ .+..-..-.|.++.|+++++.....=.+..+++|+.|+++++.
T Consensus 282 TWq~LtelDLS~N~I~--~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~ 340 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT--QIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNL 340 (490)
T ss_pred hHhhhhhccccccchh--hhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccch
Confidence 4667888888887662 2333345579999999988754322234557899999998765
No 37
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.17 E-value=0.00087 Score=60.69 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=22.4
Q ss_pred CcccEEecccCCCCcccccccccccEEEeecC
Q 040471 268 PLLEDLLLRFCRLPEKVKISSNQLKNLHFNSC 299 (340)
Q Consensus 268 ~~L~~L~l~~c~~i~~~~~~~~~L~~L~l~~c 299 (340)
++|++|++++|..+.-......+|+.|.++.+
T Consensus 156 sSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNIILPEKLPESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcccCcccccccCcEEEeccc
Confidence 68999999988865322212368999998764
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.10 E-value=9.2e-05 Score=74.07 Aligned_cols=82 Identities=18% Similarity=0.092 Sum_probs=45.2
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS 199 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 199 (340)
+.++.|+++.+.. -.++|..+...-+|++|++++..+.. .+.+..++..|.+|++.....- ..+..+....++
T Consensus 571 ~~LrVLDLs~~~~-----l~~LP~~I~~Li~LryL~L~~t~I~~-LP~~l~~Lk~L~~Lnl~~~~~l-~~~~~i~~~L~~ 643 (889)
T KOG4658|consen 571 PLLRVLDLSGNSS-----LSKLPSSIGELVHLRYLDLSDTGISH-LPSGLGNLKKLIYLNLEVTGRL-ESIPGILLELQS 643 (889)
T ss_pred cceEEEECCCCCc-----cCcCChHHhhhhhhhcccccCCCccc-cchHHHHHHhhheecccccccc-ccccchhhhccc
Confidence 4555555554332 35677777767777777776665542 3344555666666666654431 111333444666
Q ss_pred CcEEEeccc
Q 040471 200 LEDFEISAC 208 (340)
Q Consensus 200 L~~L~l~~c 208 (340)
|++|.+..-
T Consensus 644 Lr~L~l~~s 652 (889)
T KOG4658|consen 644 LRVLRLPRS 652 (889)
T ss_pred ccEEEeecc
Confidence 777766543
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.06 E-value=0.00019 Score=46.88 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=14.7
Q ss_pred CccEEEeeceeCCCCCCcccccCcccceEecceEee
Q 040471 150 SMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYI 185 (340)
Q Consensus 150 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 185 (340)
+|++|.+++|.+..-....+..+++|++|+++++.+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l 37 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNL 37 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSE
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCcc
Confidence 344455554433221111223444455555544443
No 40
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.00012 Score=58.82 Aligned_cols=92 Identities=22% Similarity=0.317 Sum_probs=68.9
Q ss_pred cCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEee-ChHHHHHHHhcCCCCcEEEecccCCCccccc--
Q 040471 140 ILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYI-NDQMFQKLTNECPSLEDFEISACWGLKNLCV-- 216 (340)
Q Consensus 140 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~-- 216 (340)
.+|..-..--.++.++-+++.+.........+++.++.|.+.+|.. +|..++.+....|+|++|+|++|..+++-.+
T Consensus 92 ~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~ 171 (221)
T KOG3864|consen 92 SLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC 171 (221)
T ss_pred cCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH
Confidence 4554333334466777777655433334566789999999999988 9999999999999999999999999887543
Q ss_pred -ccCCCCceEEecccc
Q 040471 217 -SKAHKLKKLAIYTFY 231 (340)
Q Consensus 217 -~~~~~L~~L~i~~~~ 231 (340)
..+++|+.|.+.+-.
T Consensus 172 L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 172 LLKLKNLRRLHLYDLP 187 (221)
T ss_pred HHHhhhhHHHHhcCch
Confidence 456888888887544
No 41
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.00 E-value=0.00026 Score=62.75 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=22.2
Q ss_pred ccccEEEeecCcch--hhhccCCCCeeEEEEeccCCCCc
Q 040471 289 NQLKNLHFNSCENL--KAIDTDTPNLLSFTFSYDFNPIP 325 (340)
Q Consensus 289 ~~L~~L~l~~c~~l--~~~~~~~p~L~~L~~~~~~~~~~ 325 (340)
.+|+.|++.+.+-. -.+...+.||++|+++|+.+..|
T Consensus 505 ~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr~P 543 (565)
T KOG0472|consen 505 RNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFRQP 543 (565)
T ss_pred hhcceeccCCCchhhCChhhccccceeEEEecCCccCCC
Confidence 34455554443321 23334568899999999877764
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.96 E-value=0.00028 Score=46.00 Aligned_cols=59 Identities=19% Similarity=0.209 Sum_probs=43.0
Q ss_pred cCccEEEEEeecCCCCCccccCCccc-cCCCCccEEEeeceeCCCCCCcccccCcccceEecceEe
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTI-FSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVY 184 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 184 (340)
++++.|++..+.. ..+|... ..+++|++|+++++.+..-....+..+++|++|+++++.
T Consensus 1 p~L~~L~l~~n~l------~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKL------TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTE------SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCC------CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4678888866643 5666544 458999999999988754222345788999999998765
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=0.00086 Score=57.27 Aligned_cols=82 Identities=15% Similarity=0.159 Sum_probs=55.0
Q ss_pred CccEEEeeceeCCCC--CCcccccCcccceEecceEee-ChHHHHHHHhcCCCCcEEEecccCCCccc-cc-ccCCCCce
Q 040471 150 SMATLSLFGCRMEQP--SDTTTIRLDSLKKLTLENVYI-NDQMFQKLTNECPSLEDFEISACWGLKNL-CV-SKAHKLKK 224 (340)
Q Consensus 150 ~L~~L~L~~~~~~~~--~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~L~~L~l~~c~~~~~~-~~-~~~~~L~~ 224 (340)
-++-|-+.+|.++.. .......+..++.|+|.++.+ +...+.++..+.|.|+.|+++.+.--..+ +. ....+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 344555666666542 222344678899999999988 66778889999999999999866432222 11 12467888
Q ss_pred EEecccc
Q 040471 225 LAIYTFY 231 (340)
Q Consensus 225 L~i~~~~ 231 (340)
|.+.+..
T Consensus 126 lVLNgT~ 132 (418)
T KOG2982|consen 126 LVLNGTG 132 (418)
T ss_pred EEEcCCC
Confidence 8888765
No 44
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.91 E-value=0.00015 Score=64.07 Aligned_cols=62 Identities=13% Similarity=0.145 Sum_probs=43.5
Q ss_pred HHHcCCCcccEEecccCCCCcccccc----cccccEEEeecCcch---hhhccCCCCeeEEEEeccCCCC
Q 040471 262 RFISKFPLLEDLLLRFCRLPEKVKIS----SNQLKNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNPI 324 (340)
Q Consensus 262 ~l~~~~~~L~~L~l~~c~~i~~~~~~----~~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~~ 324 (340)
.-+..+|+|+.|+++++. ++.+... ...+++|.+....-- ..+.....+|++|++.|++.+.
T Consensus 268 ~cf~~L~~L~~lnlsnN~-i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~ 336 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNK-ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITT 336 (498)
T ss_pred HHHhhcccceEeccCCCc-cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEE
Confidence 346778999999999654 5555443 367888887765431 3445567889999999977765
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.89 E-value=0.00032 Score=59.88 Aligned_cols=154 Identities=13% Similarity=0.130 Sum_probs=85.4
Q ss_pred ccCCccccCCCCccEEEeecee--CCC------CCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCC
Q 040471 139 CILPQTIFSAKSMATLSLFGCR--MEQ------PSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWG 210 (340)
Q Consensus 139 ~~l~~~~~~~~~L~~L~L~~~~--~~~------~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~ 210 (340)
+.+...+--|..|..|..++.. ++. ........|.+|+++.++.|. .+.+..+...=|.|.++.+.+...
T Consensus 172 ~d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~--~~~i~~~~~~kptl~t~~v~~s~~ 249 (490)
T KOG1259|consen 172 YDFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS--TENIVDIELLKPTLQTICVHNTTI 249 (490)
T ss_pred cchHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc--hhheeceeecCchhheeeeecccc
Confidence 3444444457789999988742 221 111233458899999988774 344555556678888887765422
Q ss_pred C-------------------------cccccccCCCCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHH
Q 040471 211 L-------------------------KNLCVSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFI 264 (340)
Q Consensus 211 ~-------------------------~~~~~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~ 264 (340)
- ....+.....|+.++++++. ..+....--+|+++.+ +++++.|..-.- +
T Consensus 250 ~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L-~lS~N~i~~v~n---L 325 (490)
T KOG1259|consen 250 QDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRL-ILSQNRIRTVQN---L 325 (490)
T ss_pred cccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEE-eccccceeeehh---h
Confidence 0 00111224567777777665 2222222346777776 555554432221 4
Q ss_pred cCCCcccEEecccCCCCcc--cccccccccEEEeec
Q 040471 265 SKFPLLEDLLLRFCRLPEK--VKISSNQLKNLHFNS 298 (340)
Q Consensus 265 ~~~~~L~~L~l~~c~~i~~--~~~~~~~L~~L~l~~ 298 (340)
.++++|++|+++++..-+- ......+++.|.+.+
T Consensus 326 a~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 326 AELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 5678888888887654222 222234555555543
No 46
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.88 E-value=0.00028 Score=60.82 Aligned_cols=38 Identities=34% Similarity=0.557 Sum_probs=35.7
Q ss_pred cCCccCCCc----hhHHHHHhcCCchhhhhhhhcccccchhh
Q 040471 6 GMDRITELP----TFIIHHIMSYLSAKEIARTSILSKRWCLF 43 (340)
Q Consensus 6 ~~d~i~~LP----d~il~~Ifs~L~~~d~~~~s~vskrW~~l 43 (340)
.+|.|+.|| |+|...||+||+..++.+|..|||+|+++
T Consensus 71 qrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~ 112 (499)
T KOG0281|consen 71 QRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV 112 (499)
T ss_pred HHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 468999999 99999999999999999999999999974
No 47
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.37 E-value=0.0015 Score=65.68 Aligned_cols=90 Identities=21% Similarity=0.234 Sum_probs=57.1
Q ss_pred HHHHHHHHHHcCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEee--Ch
Q 040471 110 LDKWIGLAVDNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYI--ND 187 (340)
Q Consensus 110 l~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~--~~ 187 (340)
+..-++..+ ++|.|++..+.. ..+|..+...+.|.+|++.....-.........+++||+|.+..... +.
T Consensus 587 LP~~I~~Li--~LryL~L~~t~I------~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~ 658 (889)
T KOG4658|consen 587 LPSSIGELV--HLRYLDLSDTGI------SHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDK 658 (889)
T ss_pred CChHHhhhh--hhhcccccCCCc------cccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccch
Confidence 333344433 677777766654 68999999999999999997542221112334589999999987764 33
Q ss_pred HHHHHHHhcCCCCcEEEeccc
Q 040471 188 QMFQKLTNECPSLEDFEISAC 208 (340)
Q Consensus 188 ~~l~~l~~~~p~L~~L~l~~c 208 (340)
..+.. +....+|+.+.+..+
T Consensus 659 ~~l~e-l~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 659 LLLKE-LENLEHLENLSITIS 678 (889)
T ss_pred hhHHh-hhcccchhhheeecc
Confidence 33333 355566666655443
No 48
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=96.35 E-value=0.0019 Score=57.75 Aligned_cols=38 Identities=21% Similarity=0.310 Sum_probs=34.5
Q ss_pred CccCCCchhHHHHHhcCCc-hhhhhhhhcccccchhhhc
Q 040471 8 DRITELPTFIIHHIMSYLS-AKEIARTSILSKRWCLFCI 45 (340)
Q Consensus 8 d~i~~LPd~il~~Ifs~L~-~~d~~~~s~vskrW~~l~~ 45 (340)
-+|++||+|+|..|..+|+ ..|++|.+.|||.||....
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 3599999999999999996 8999999999999998654
No 49
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.00074 Score=57.14 Aligned_cols=56 Identities=21% Similarity=0.210 Sum_probs=26.4
Q ss_pred CcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcccccccCCCCceEEeccc
Q 040471 172 LDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLAIYTF 230 (340)
Q Consensus 172 ~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~ 230 (340)
+.+.++|++++|.++|-. +....|.||.|.|+-+..-.--.+..|.+|++|-+..+
T Consensus 18 l~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN 73 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKN 73 (388)
T ss_pred HHHhhhhcccCCCccHHH---HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhc
Confidence 344555666666554322 22345666666665432211113344555555555433
No 50
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=96.11 E-value=0.008 Score=31.51 Aligned_cols=25 Identities=36% Similarity=0.757 Sum_probs=22.5
Q ss_pred ccceEecceEee-ChHHHHHHHhcCC
Q 040471 174 SLKKLTLENVYI-NDQMFQKLTNECP 198 (340)
Q Consensus 174 ~L~~L~L~~~~~-~~~~l~~l~~~~p 198 (340)
+||+|+|.++.+ +++.++.++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 589999999999 6778999999998
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.02 E-value=0.0063 Score=51.52 Aligned_cols=157 Identities=15% Similarity=0.103 Sum_probs=90.6
Q ss_pred ccccCcccceEecceEee---ChHHHHHHHhcCCCCcEEEecccCC--Ccc---------c----ccccCCCCceEEecc
Q 040471 168 TTIRLDSLKKLTLENVYI---NDQMFQKLTNECPSLEDFEISACWG--LKN---------L----CVSKAHKLKKLAIYT 229 (340)
Q Consensus 168 ~~~~~~~L~~L~L~~~~~---~~~~l~~l~~~~p~L~~L~l~~c~~--~~~---------~----~~~~~~~L~~L~i~~ 229 (340)
....||.|++.+|+++.+ ..+.+..+++....|++|.+++|.- +.. + -..+-|.|+......
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 345677888888887777 4456777778888888888888732 100 0 112347777777665
Q ss_pred cc--ccccee---eecC-cCcceEeccCceeeccHHHHHH----HcCCCcccEEecccCCC-------Cccccccccccc
Q 040471 230 FY--KDIGIV---EIVV-PSLQQQLMLTSVWFMDEEFDRF----ISKFPLLEDLLLRFCRL-------PEKVKISSNQLK 292 (340)
Q Consensus 230 ~~--~~~~~~---~~~~-p~L~~ll~l~~~~i~~~~~~~l----~~~~~~L~~L~l~~c~~-------i~~~~~~~~~L~ 292 (340)
+. .+.... .+.. .+|+.+ .+..+.|..+++..+ +..+.+|+.|++..+.. +.+.....+.|+
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~v-ki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEV-KIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeE-EeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 54 111110 0111 234443 344444555543322 35688999999987653 222222357789
Q ss_pred EEEeecCcch--------hhh-ccCCCCeeEEEEeccCCCCc
Q 040471 293 NLHFNSCENL--------KAI-DTDTPNLLSFTFSYDFNPIP 325 (340)
Q Consensus 293 ~L~l~~c~~l--------~~~-~~~~p~L~~L~~~~~~~~~~ 325 (340)
+|.+..|--- ..+ ....|||+.|.+.++.....
T Consensus 246 EL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 246 ELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred hccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence 9999887431 111 23458999988777665543
No 52
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.92 E-value=0.0024 Score=51.56 Aligned_cols=49 Identities=24% Similarity=0.304 Sum_probs=39.6
Q ss_pred eeccHHHHHHHcCCCcccEEecccCCCCcccccc----cccccEEEeecCcch
Q 040471 254 WFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKIS----SNQLKNLHFNSCENL 302 (340)
Q Consensus 254 ~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~----~~~L~~L~l~~c~~l 302 (340)
.+.|.++..+..-.|+|+.|+|++|+.|++-++. +++|+.|.+.+.+..
T Consensus 137 ~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 137 YFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred chhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 4556667777677899999999999999998887 488999988876654
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.87 E-value=0.013 Score=53.31 Aligned_cols=137 Identities=20% Similarity=0.238 Sum_probs=76.6
Q ss_pred ccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcccccccCCCCce
Q 040471 145 IFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKK 224 (340)
Q Consensus 145 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~~L~~ 224 (340)
+..|+++++|++++|.+.. .+ .--++|+.|.+.+|..- ..+... -.++|++|.+.+|..+..+ -+.|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~s--LP--~LP~sLtsL~Lsnc~nL-tsLP~~--LP~nLe~L~Ls~Cs~L~sL----P~sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES--LP--VLPNELTEITIENCNNL-TTLPGS--IPEGLEKLTVCHCPEISGL----PESVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc--cC--CCCCCCcEEEccCCCCc-ccCCch--hhhhhhheEccCccccccc----ccccce
Confidence 3447889999999885543 11 11235888888776530 011111 1357788888877655432 145666
Q ss_pred EEecccccccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCc--cccc-ccccccEEEeecCcc
Q 040471 225 LAIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPE--KVKI-SSNQLKNLHFNSCEN 301 (340)
Q Consensus 225 L~i~~~~~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~--~~~~-~~~~L~~L~l~~c~~ 301 (340)
|.+.+.. + ..+..-.++|++|.+.++.... ..+. ..++|+.|.+.+|..
T Consensus 117 L~L~~n~---------~-------------------~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~ 168 (426)
T PRK15386 117 LEIKGSA---------T-------------------DSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSN 168 (426)
T ss_pred EEeCCCC---------C-------------------cccccCcchHhheeccccccccccccccccCCcccEEEecCCCc
Confidence 6665322 0 0111123567888875433221 1121 236899999999987
Q ss_pred hhhhccCCCCeeEEEEecc
Q 040471 302 LKAIDTDTPNLLSFTFSYD 320 (340)
Q Consensus 302 l~~~~~~~p~L~~L~~~~~ 320 (340)
+.--..-.++|++|.+...
T Consensus 169 i~LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 169 IILPEKLPESLQSITLHIE 187 (426)
T ss_pred ccCcccccccCcEEEeccc
Confidence 5311123368999988653
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.84 E-value=0.009 Score=57.32 Aligned_cols=198 Identities=20% Similarity=0.193 Sum_probs=101.6
Q ss_pred ccCcccceEEEEEeccCcCCChhhHH---HHHHHHHHcCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCC
Q 040471 86 KLRFRMQELRLFQSFLDVKGSAPLLD---KWIGLAVDNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRME 162 (340)
Q Consensus 86 ~~~~~l~~l~l~~~~~~~~~~~~~l~---~~l~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~ 162 (340)
.++.+++.|+...+- ..+...+. +++.. -+..+.+.+--... .+..=|-.++.+++|+.|.|.+|.+.
T Consensus 52 ~~g~~~~~f~a~~s~---~ads~vl~qLq~i~d~--lqkt~~lkl~~~pa----~~pt~pi~ifpF~sLr~LElrg~~L~ 122 (1096)
T KOG1859|consen 52 LSGAPVDYFRAYVSD---NADSRVLEQLQRILDF--LQKTKVLKLLPSPA----RDPTEPISIFPFRSLRVLELRGCDLS 122 (1096)
T ss_pred cCCCCCceeEEecCC---cccchHHHHHHHHHHH--HhhheeeeecccCC----CCCCCCceeccccceeeEEecCcchh
Confidence 446788888877552 22332232 22222 24555555533332 23333778899999999999998765
Q ss_pred CCCCcccccC-cccceE--------------------------------ecceEeeChHHHHHHHhcCCCCcEEEecccC
Q 040471 163 QPSDTTTIRL-DSLKKL--------------------------------TLENVYINDQMFQKLTNECPSLEDFEISACW 209 (340)
Q Consensus 163 ~~~~~~~~~~-~~L~~L--------------------------------~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~ 209 (340)
..- +...+ ..|++| +++.++. ..+..-+.-.|.|+.|+++.+.
T Consensus 123 ~~~--GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L--~~mD~SLqll~ale~LnLshNk 198 (1096)
T KOG1859|consen 123 TAK--GLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRL--VLMDESLQLLPALESLNLSHNK 198 (1096)
T ss_pred hhh--hhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhH--HhHHHHHHHHHHhhhhccchhh
Confidence 411 11110 122222 2222211 1122223335677788887764
Q ss_pred CCcccccccCCCCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCcccccc-
Q 040471 210 GLKNLCVSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKIS- 287 (340)
Q Consensus 210 ~~~~~~~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~- 287 (340)
-...-.+..|++|++|+|+.+. ..+..+.-..-+|..| .+.++.++. ..-+.++.+|+.|+++.+-..+.--..
T Consensus 199 ~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L-~lrnN~l~t---L~gie~LksL~~LDlsyNll~~hseL~p 274 (1096)
T KOG1859|consen 199 FTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLL-NLRNNALTT---LRGIENLKSLYGLDLSYNLLSEHSELEP 274 (1096)
T ss_pred hhhhHHHHhcccccccccccchhccccccchhhhhheee-eecccHHHh---hhhHHhhhhhhccchhHhhhhcchhhhH
Confidence 3222245668889999988765 3333333322235444 444433321 112456788889999864322111111
Q ss_pred ---cccccEEEeecCc
Q 040471 288 ---SNQLKNLHFNSCE 300 (340)
Q Consensus 288 ---~~~L~~L~l~~c~ 300 (340)
...|+.|.+.|++
T Consensus 275 LwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 275 LWSLSSLIVLWLEGNP 290 (1096)
T ss_pred HHHHHHHHHHhhcCCc
Confidence 2467777777644
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.77 E-value=0.00095 Score=55.91 Aligned_cols=13 Identities=31% Similarity=0.340 Sum_probs=6.4
Q ss_pred CCcccEEecccCC
Q 040471 267 FPLLEDLLLRFCR 279 (340)
Q Consensus 267 ~~~L~~L~l~~c~ 279 (340)
.++|..|++.+|.
T Consensus 115 l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 115 LENLKSLDLFNCS 127 (260)
T ss_pred hcchhhhhcccCC
Confidence 3445555555444
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.62 E-value=0.0033 Score=52.73 Aligned_cols=89 Identities=22% Similarity=0.248 Sum_probs=57.1
Q ss_pred CCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEee-ChHHHHHHHhcCCCCcEEEecccCC--Cccc-cc
Q 040471 141 LPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYI-NDQMFQKLTNECPSLEDFEISACWG--LKNL-CV 216 (340)
Q Consensus 141 l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~L~~L~l~~c~~--~~~~-~~ 216 (340)
+........+|+.|++.++.+.+ ....-.+|+||+|.++.++. ....+.-++..||+|++|+++++.. +..+ ..
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 44444445667777777765432 11223567889999988865 4556777788889999999988743 2222 22
Q ss_pred ccCCCCceEEecccc
Q 040471 217 SKAHKLKKLAIYTFY 231 (340)
Q Consensus 217 ~~~~~L~~L~i~~~~ 231 (340)
..+++|..|++.+|.
T Consensus 113 ~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 113 KELENLKSLDLFNCS 127 (260)
T ss_pred hhhcchhhhhcccCC
Confidence 345677777777776
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.62 E-value=0.008 Score=36.14 Aligned_cols=12 Identities=17% Similarity=0.332 Sum_probs=4.4
Q ss_pred CccEEEeeceeC
Q 040471 150 SMATLSLFGCRM 161 (340)
Q Consensus 150 ~L~~L~L~~~~~ 161 (340)
+|++|+++++.+
T Consensus 2 ~L~~L~l~~N~i 13 (44)
T PF12799_consen 2 NLEELDLSNNQI 13 (44)
T ss_dssp T-SEEEETSSS-
T ss_pred cceEEEccCCCC
Confidence 344444444443
No 58
>PLN03150 hypothetical protein; Provisional
Probab=95.57 E-value=0.014 Score=57.07 Aligned_cols=80 Identities=15% Similarity=0.097 Sum_probs=56.1
Q ss_pred ccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccc--ccccCCCCceEEec
Q 040471 151 MATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNL--CVSKAHKLKKLAIY 228 (340)
Q Consensus 151 L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~--~~~~~~~L~~L~i~ 228 (340)
++.|+|+++.+....+.....+++|+.|+|+++.+... +......+++|+.|+++++.-...+ .+..+++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 77888888776554445566788899999988876432 2223567888999999887543222 35567889999888
Q ss_pred ccc
Q 040471 229 TFY 231 (340)
Q Consensus 229 ~~~ 231 (340)
++.
T Consensus 499 ~N~ 501 (623)
T PLN03150 499 GNS 501 (623)
T ss_pred CCc
Confidence 775
No 59
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.45 E-value=0.0069 Score=52.05 Aligned_cols=38 Identities=16% Similarity=0.336 Sum_probs=32.1
Q ss_pred CccCCCchhHHHHHhcC-----Cchhhhhhhhcccccchhhhc
Q 040471 8 DRITELPTFIIHHIMSY-----LSAKEIARTSILSKRWCLFCI 45 (340)
Q Consensus 8 d~i~~LPd~il~~Ifs~-----L~~~d~~~~s~vskrW~~l~~ 45 (340)
+.|+.||||||..||.. |+.+++.++|+|||.|+...+
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R 147 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCAR 147 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHc
Confidence 44789999999999964 567999999999999986543
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.42 E-value=0.02 Score=46.37 Aligned_cols=85 Identities=21% Similarity=0.158 Sum_probs=54.3
Q ss_pred cCCCCccEEEeeceeCCCCCCcccccCcccceEecceEee-ChHHHHHHHhcCCCCcEEEecccCCC-----cccccccC
Q 040471 146 FSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYI-NDQMFQKLTNECPSLEDFEISACWGL-----KNLCVSKA 219 (340)
Q Consensus 146 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~L~~L~l~~c~~~-----~~~~~~~~ 219 (340)
...+.|+.|.|.++.+..-.......+|+|+.|.|.++.+ .-..++- ...||.|++|.+-+...- .-..+..+
T Consensus 61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNPVEHKKNYRLYVLYKL 139 (233)
T ss_pred CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCchhcccCceeEEEEec
Confidence 3467788888888765432222344578888888888876 4444554 356888888888776431 11123456
Q ss_pred CCCceEEecccc
Q 040471 220 HKLKKLAIYTFY 231 (340)
Q Consensus 220 ~~L~~L~i~~~~ 231 (340)
|+|+.|+..+..
T Consensus 140 p~l~~LDF~kVt 151 (233)
T KOG1644|consen 140 PSLRTLDFQKVT 151 (233)
T ss_pred CcceEeehhhhh
Confidence 888888777644
No 61
>PLN03150 hypothetical protein; Provisional
Probab=95.25 E-value=0.024 Score=55.35 Aligned_cols=104 Identities=13% Similarity=0.116 Sum_probs=71.8
Q ss_pred ccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCc
Q 040471 122 IKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLE 201 (340)
Q Consensus 122 l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~ 201 (340)
+..|++..+.. ...+|..+..+++|+.|+|+++.+....+.....+++|+.|+|+++.++... ...+..+++|+
T Consensus 420 v~~L~L~~n~L-----~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i-P~~l~~L~~L~ 493 (623)
T PLN03150 420 IDGLGLDNQGL-----RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-PESLGQLTSLR 493 (623)
T ss_pred EEEEECCCCCc-----cccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC-chHHhcCCCCC
Confidence 55566644433 3467888888999999999999886555556778999999999999874332 23356799999
Q ss_pred EEEecccCCCccc--cccc-CCCCceEEecccc
Q 040471 202 DFEISACWGLKNL--CVSK-AHKLKKLAIYTFY 231 (340)
Q Consensus 202 ~L~l~~c~~~~~~--~~~~-~~~L~~L~i~~~~ 231 (340)
.|+++++.-...+ .+.. ..++..+++.++.
T Consensus 494 ~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred EEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 9999988532222 1111 2355667776654
No 62
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=95.08 E-value=0.0013 Score=51.76 Aligned_cols=60 Identities=20% Similarity=0.160 Sum_probs=35.0
Q ss_pred CccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeCh
Q 040471 121 GIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYIND 187 (340)
Q Consensus 121 ~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 187 (340)
+++.|++..+ ...++|.++.+.++|+.|+++-+++.. .+.++..||.|+.|+|.++..++
T Consensus 57 nlevln~~nn------qie~lp~~issl~klr~lnvgmnrl~~-lprgfgs~p~levldltynnl~e 116 (264)
T KOG0617|consen 57 NLEVLNLSNN------QIEELPTSISSLPKLRILNVGMNRLNI-LPRGFGSFPALEVLDLTYNNLNE 116 (264)
T ss_pred hhhhhhcccc------hhhhcChhhhhchhhhheecchhhhhc-CccccCCCchhhhhhcccccccc
Confidence 4455555333 235677777777777777776655432 22345566777777776665543
No 63
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=94.42 E-value=0.018 Score=30.11 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=15.0
Q ss_pred CCcccEEecccCCCCccccc
Q 040471 267 FPLLEDLLLRFCRLPEKVKI 286 (340)
Q Consensus 267 ~~~L~~L~l~~c~~i~~~~~ 286 (340)
||+|++|++++|..++|.++
T Consensus 1 c~~L~~L~l~~C~~itD~gl 20 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGL 20 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHH
Confidence 57788888888887777654
No 64
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.42 E-value=0.036 Score=50.99 Aligned_cols=153 Identities=20% Similarity=0.173 Sum_probs=75.0
Q ss_pred ccCCccccCCC-CccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccccc-
Q 040471 139 CILPQTIFSAK-SMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCV- 216 (340)
Q Consensus 139 ~~l~~~~~~~~-~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~- 216 (340)
..++......+ +|+.|+++++.+..- ......+++|+.|.+.++.+++ +.......++|+.|.+++..- ..+..
T Consensus 129 ~~i~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L~ls~N~i-~~l~~~ 204 (394)
T COG4886 129 TDIPPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLDLSGNKI-SDLPPE 204 (394)
T ss_pred ccCccccccchhhcccccccccchhhh-hhhhhccccccccccCCchhhh--hhhhhhhhhhhhheeccCCcc-ccCchh
Confidence 45555555553 677777777665431 1134566777777777765521 122122566777777776532 22111
Q ss_pred -ccCCCCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCccccc--cccccc
Q 040471 217 -SKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKI--SSNQLK 292 (340)
Q Consensus 217 -~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~--~~~~L~ 292 (340)
.....|++|.+.+.. ...........++..+ .+.+..+.+ +...+..+++|+.|+++++. ++++.. ...+++
T Consensus 205 ~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l-~l~~n~~~~--~~~~~~~l~~l~~L~~s~n~-i~~i~~~~~~~~l~ 280 (394)
T COG4886 205 IELLSALEELDLSNNSIIELLSSLSNLKNLSGL-ELSNNKLED--LPESIGNLSNLETLDLSNNQ-ISSISSLGSLTNLR 280 (394)
T ss_pred hhhhhhhhhhhhcCCcceecchhhhhccccccc-ccCCceeee--ccchhccccccceecccccc-ccccccccccCccC
Confidence 122336666666552 0111111112222222 122222211 13445667778888888544 444332 246777
Q ss_pred EEEeecC
Q 040471 293 NLHFNSC 299 (340)
Q Consensus 293 ~L~l~~c 299 (340)
.|++++.
T Consensus 281 ~L~~s~n 287 (394)
T COG4886 281 ELDLSGN 287 (394)
T ss_pred EEeccCc
Confidence 7777663
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.29 E-value=0.0034 Score=53.25 Aligned_cols=96 Identities=19% Similarity=0.097 Sum_probs=53.6
Q ss_pred CccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEee-ChHHHHHHHhcCCC
Q 040471 121 GIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYI-NDQMFQKLTNECPS 199 (340)
Q Consensus 121 ~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~ 199 (340)
+++.|+..+|.. .+..+. ...+.|+.|.|+-+.+.. ......|.+|+.|.|..+.+ +.+.+.. +.+.|+
T Consensus 20 ~vkKLNcwg~~L----~DIsic---~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~Y-Lknlps 89 (388)
T KOG2123|consen 20 NVKKLNCWGCGL----DDISIC---EKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEY-LKNLPS 89 (388)
T ss_pred HhhhhcccCCCc----cHHHHH---HhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHH-HhcCch
Confidence 455666655544 222222 224556777777666543 12345677777777777776 5555655 356777
Q ss_pred CcEEEecccCCCcc-------cccccCCCCceEE
Q 040471 200 LEDFEISACWGLKN-------LCVSKAHKLKKLA 226 (340)
Q Consensus 200 L~~L~l~~c~~~~~-------~~~~~~~~L~~L~ 226 (340)
|+.|.|..+..... ..++.+|+|+.|+
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 77777765433211 1233456666664
No 66
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.15 E-value=0.029 Score=33.66 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=28.7
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQ 163 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 163 (340)
+++++|++..+.. ..+|+.+..+++|+.|+++++.+..
T Consensus 1 ~~L~~L~l~~N~i------~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQI------TDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-------SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCC------cccCchHhCCCCCCEEEecCCCCCC
Confidence 3678888866654 5678778899999999999987753
No 67
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=93.84 E-value=0.049 Score=28.45 Aligned_cols=17 Identities=29% Similarity=0.995 Sum_probs=7.8
Q ss_pred CCCCcEEEecccCCCcc
Q 040471 197 CPSLEDFEISACWGLKN 213 (340)
Q Consensus 197 ~p~L~~L~l~~c~~~~~ 213 (340)
||+|++|++++|..+++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 34444444444444443
No 68
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.66 E-value=0.13 Score=41.91 Aligned_cols=36 Identities=28% Similarity=0.274 Sum_probs=17.6
Q ss_pred cCCCcccEEecccCCCCcc------cccccccccEEEeecCc
Q 040471 265 SKFPLLEDLLLRFCRLPEK------VKISSNQLKNLHFNSCE 300 (340)
Q Consensus 265 ~~~~~L~~L~l~~c~~i~~------~~~~~~~L~~L~l~~c~ 300 (340)
..||.|++|.+-+++.-.. +.-..|+|+.|++.+..
T Consensus 110 a~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 110 ASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 4566666666665442111 11124666666665543
No 69
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=93.23 E-value=0.037 Score=52.72 Aligned_cols=39 Identities=21% Similarity=0.463 Sum_probs=36.3
Q ss_pred ccCCccCCCchhHHHHHhcCCchhhhhhhhcccccchhh
Q 040471 5 KGMDRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLF 43 (340)
Q Consensus 5 ~~~d~i~~LPd~il~~Ifs~L~~~d~~~~s~vskrW~~l 43 (340)
..+|.++.||-++..+||+||+.++++++++||+.|+.+
T Consensus 103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 356899999999999999999999999999999999875
No 70
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=93.22 E-value=0.037 Score=50.93 Aligned_cols=147 Identities=18% Similarity=0.149 Sum_probs=90.4
Q ss_pred CccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCC
Q 040471 121 GIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSL 200 (340)
Q Consensus 121 ~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L 200 (340)
+++.|++..... ..+|..+..+++|+.|.++.+.+... .......++|+.|+++++.+.+ +.........|
T Consensus 141 nL~~L~l~~N~i------~~l~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~~~L~~L~ls~N~i~~--l~~~~~~~~~L 211 (394)
T COG4886 141 NLKELDLSDNKI------ESLPSPLRNLPNLKNLDLSFNDLSDL-PKLLSNLSNLNNLDLSGNKISD--LPPEIELLSAL 211 (394)
T ss_pred hcccccccccch------hhhhhhhhccccccccccCCchhhhh-hhhhhhhhhhhheeccCCcccc--Cchhhhhhhhh
Confidence 677777755443 45556678899999999999987651 1222278999999999988721 11112334558
Q ss_pred cEEEecccCCCccc-ccccCCCCceEEeccccc-ccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccC
Q 040471 201 EDFEISACWGLKNL-CVSKAHKLKKLAIYTFYK-DIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFC 278 (340)
Q Consensus 201 ~~L~l~~c~~~~~~-~~~~~~~L~~L~i~~~~~-~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c 278 (340)
++|.+++....... .+..+.++..+.+..... .........+.++.+ .+.+..+++-.. +....+|++|++++.
T Consensus 212 ~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L-~~s~n~i~~i~~---~~~~~~l~~L~~s~n 287 (394)
T COG4886 212 EELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETL-DLSNNQISSISS---LGSLTNLRELDLSGN 287 (394)
T ss_pred hhhhhcCCcceecchhhhhcccccccccCCceeeeccchhcccccccee-cccccccccccc---ccccCccCEEeccCc
Confidence 88888877433322 233445555555443331 111222345567666 666665554333 567789999999876
Q ss_pred CC
Q 040471 279 RL 280 (340)
Q Consensus 279 ~~ 280 (340)
..
T Consensus 288 ~~ 289 (394)
T COG4886 288 SL 289 (394)
T ss_pred cc
Confidence 54
No 71
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.02 E-value=0.003 Score=56.25 Aligned_cols=47 Identities=21% Similarity=0.252 Sum_probs=28.5
Q ss_pred cccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEee
Q 040471 138 VCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYI 185 (340)
Q Consensus 138 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 185 (340)
..++++.++.|..|..|+..++.+.. .++.+.++.+|..+.+.++..
T Consensus 126 ~~el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l 172 (565)
T KOG0472|consen 126 LKELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKL 172 (565)
T ss_pred eeecCchHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccch
Confidence 35666677777777777666665543 223445566666666666654
No 72
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.18 E-value=0.17 Score=25.73 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=13.6
Q ss_pred CcccceEecceEeeChHHHHHHH
Q 040471 172 LDSLKKLTLENVYINDQMFQKLT 194 (340)
Q Consensus 172 ~~~L~~L~L~~~~~~~~~l~~l~ 194 (340)
+++|++|+|+++.++++++..+.
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 36677777777777666666553
No 73
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=90.28 E-value=0.2 Score=48.59 Aligned_cols=54 Identities=20% Similarity=0.335 Sum_probs=29.6
Q ss_pred cCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCC--CcccccccccccEEEeecC
Q 040471 242 PSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRL--PEKVKISSNQLKNLHFNSC 299 (340)
Q Consensus 242 p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~--i~~~~~~~~~L~~L~l~~c 299 (340)
|++++| +++++.+++.. .+..|+.|+||+|+.+.. +..++...-+|..|.++++
T Consensus 187 ~ale~L-nLshNk~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN 242 (1096)
T KOG1859|consen 187 PALESL-NLSHNKFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNN 242 (1096)
T ss_pred HHhhhh-ccchhhhhhhH---HHHhcccccccccccchhccccccchhhhhheeeeeccc
Confidence 444444 66665555443 455678888888876543 2223222223666666654
No 74
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=90.24 E-value=0.074 Score=49.34 Aligned_cols=81 Identities=19% Similarity=0.142 Sum_probs=51.4
Q ss_pred ccCCCCccEEEeeceeCCCCCCcc-cccCcccceEecceEee-ChHHHHHHHhcCCCCcEEEecccCCCcccccccCCCC
Q 040471 145 IFSAKSMATLSLFGCRMEQPSDTT-TIRLDSLKKLTLENVYI-NDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKL 222 (340)
Q Consensus 145 ~~~~~~L~~L~L~~~~~~~~~~~~-~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~~L 222 (340)
+..+++|+.|.+.++.+..- .. ...+++|+.|+++++.+ +...+.. ++.|+.|++.++..-..-....++.|
T Consensus 91 l~~~~~l~~l~l~~n~i~~i--~~~l~~~~~L~~L~ls~N~I~~i~~l~~----l~~L~~L~l~~N~i~~~~~~~~l~~L 164 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKI--ENLLSSLVNLQVLDLSFNKITKLEGLST----LTLLKELNLSGNLISDISGLESLKSL 164 (414)
T ss_pred cccccceeeeeccccchhhc--ccchhhhhcchheeccccccccccchhh----ccchhhheeccCcchhccCCccchhh
Confidence 44567888888887766541 12 45678888888888777 4444443 44488888887644332233335677
Q ss_pred ceEEecccc
Q 040471 223 KKLAIYTFY 231 (340)
Q Consensus 223 ~~L~i~~~~ 231 (340)
+.++++++.
T Consensus 165 ~~l~l~~n~ 173 (414)
T KOG0531|consen 165 KLLDLSYNR 173 (414)
T ss_pred hcccCCcch
Confidence 777777665
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.76 E-value=0.29 Score=22.60 Aligned_cols=12 Identities=42% Similarity=0.351 Sum_probs=5.9
Q ss_pred CcccEEecccCC
Q 040471 268 PLLEDLLLRFCR 279 (340)
Q Consensus 268 ~~L~~L~l~~c~ 279 (340)
++|+.|++++|.
T Consensus 1 ~~L~~L~l~~n~ 12 (17)
T PF13504_consen 1 PNLRTLDLSNNR 12 (17)
T ss_dssp TT-SEEEETSS-
T ss_pred CccCEEECCCCC
Confidence 356666666555
No 76
>PF13013 F-box-like_2: F-box-like domain
Probab=88.17 E-value=0.25 Score=36.06 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=26.9
Q ss_pred cCCCchhHHHHHhcCCchhhhhhhhcccc
Q 040471 10 ITELPTFIIHHIMSYLSAKEIARTSILSK 38 (340)
Q Consensus 10 i~~LPd~il~~Ifs~L~~~d~~~~s~vsk 38 (340)
+.+||+|++..||.+-+..+...+...|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 78899999999999999999999988877
No 77
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=87.91 E-value=0.69 Score=39.60 Aligned_cols=162 Identities=14% Similarity=0.173 Sum_probs=82.6
Q ss_pred CCCccEEEeeceeCCCCCCc----ccccCcccceEecceEee---ChHH------HHHHHhcCCCCcEEEecccCC-Ccc
Q 040471 148 AKSMATLSLFGCRMEQPSDT----TTIRLDSLKKLTLENVYI---NDQM------FQKLTNECPSLEDFEISACWG-LKN 213 (340)
Q Consensus 148 ~~~L~~L~L~~~~~~~~~~~----~~~~~~~L~~L~L~~~~~---~~~~------l~~l~~~~p~L~~L~l~~c~~-~~~ 213 (340)
...++.+.|+|++++...+. ..++-.+|+..++++... -++- +...+..||.|+..+++.+.- ...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 56677888888777552221 223446677777766543 1111 222234678888777776522 110
Q ss_pred ---c--ccccCCCCceEEecccccccceeeecCcCcceEeccCceeeccH----HHHHHHcCCCcccEEecccCCCCcc-
Q 040471 214 ---L--CVSKAHKLKKLAIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDE----EFDRFISKFPLLEDLLLRFCRLPEK- 283 (340)
Q Consensus 214 ---~--~~~~~~~L~~L~i~~~~~~~~~~~~~~p~L~~ll~l~~~~i~~~----~~~~l~~~~~~L~~L~l~~c~~i~~- 283 (340)
+ .+.+...|++|.+++|. ...+ .+.+|... +...-...-|.|+......++.-.-
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnG--lGp~-------------aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs 173 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNG--LGPI-------------AGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGS 173 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCC--CCcc-------------chhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCc
Confidence 1 13344667777777665 1110 11111111 2223356678888888887665211
Q ss_pred -----ccccc-ccccEEEeecCcch--------hhhccCCCCeeEEEEeccCCCC
Q 040471 284 -----VKISS-NQLKNLHFNSCENL--------KAIDTDTPNLLSFTFSYDFNPI 324 (340)
Q Consensus 284 -----~~~~~-~~L~~L~l~~c~~l--------~~~~~~~p~L~~L~~~~~~~~~ 324 (340)
....+ ..|+.+.+..+.-- ..-...+.+|+-|++..+.++.
T Consensus 174 ~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~ 228 (388)
T COG5238 174 KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL 228 (388)
T ss_pred HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh
Confidence 11112 36777776654321 1112345677777776655543
No 78
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=87.65 E-value=0.3 Score=24.23 Aligned_cols=18 Identities=28% Similarity=-0.068 Sum_probs=9.6
Q ss_pred cccEEecccCCCCcccccc
Q 040471 269 LLEDLLLRFCRLPEKVKIS 287 (340)
Q Consensus 269 ~L~~L~l~~c~~i~~~~~~ 287 (340)
+|++|++++| .++.++..
T Consensus 1 ~L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp TESEEEETSS-EESEEGTT
T ss_pred CccEEECCCC-cCEeCChh
Confidence 3566666666 34444433
No 79
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=85.97 E-value=0.14 Score=47.41 Aligned_cols=81 Identities=19% Similarity=0.092 Sum_probs=45.3
Q ss_pred ccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEee-ChHHHHHHHhcCCCCcEEEecccCCCcccc--cccCCC
Q 040471 145 IFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYI-NDQMFQKLTNECPSLEDFEISACWGLKNLC--VSKAHK 221 (340)
Q Consensus 145 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~--~~~~~~ 221 (340)
+..+++|+.|+++++.+..- .....++.|+.|++.++.+ +...+.. +++|+.++++++.....-. ...+.+
T Consensus 114 l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~~~~~~----l~~L~~l~l~~n~i~~ie~~~~~~~~~ 187 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDISGLES----LKSLKLLDLSYNRIVDIENDELSELIS 187 (414)
T ss_pred hhhhhcchheeccccccccc--cchhhccchhhheeccCcchhccCCcc----chhhhcccCCcchhhhhhhhhhhhccc
Confidence 44567777777777766441 2344556677777777665 3222222 5666666666654432222 244566
Q ss_pred CceEEecccc
Q 040471 222 LKKLAIYTFY 231 (340)
Q Consensus 222 L~~L~i~~~~ 231 (340)
++.+.+++..
T Consensus 188 l~~l~l~~n~ 197 (414)
T KOG0531|consen 188 LEELDLGGNS 197 (414)
T ss_pred hHHHhccCCc
Confidence 6666666544
No 80
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=82.78 E-value=0.76 Score=41.41 Aligned_cols=83 Identities=11% Similarity=0.069 Sum_probs=48.8
Q ss_pred cCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCC--CcccccccCCCCc
Q 040471 146 FSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWG--LKNLCVSKAHKLK 223 (340)
Q Consensus 146 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~--~~~~~~~~~~~L~ 223 (340)
...++|+.|+|+++.++......+.....++.|.|.++.+.. .-..++.+..+|+.|++.+... +....+...-+|.
T Consensus 271 ~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~-v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEF-VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS 349 (498)
T ss_pred hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHH-HHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence 346788888888877654333344566777788777765411 1133456677888888887532 2222333345566
Q ss_pred eEEecc
Q 040471 224 KLAIYT 229 (340)
Q Consensus 224 ~L~i~~ 229 (340)
.|.+-.
T Consensus 350 ~l~l~~ 355 (498)
T KOG4237|consen 350 TLNLLS 355 (498)
T ss_pred eeehcc
Confidence 666544
No 81
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=80.86 E-value=1.6 Score=41.10 Aligned_cols=62 Identities=16% Similarity=0.196 Sum_probs=42.0
Q ss_pred ccCcccceEecceEee-ChHHHHHHHhcCCCCcEEEecccCCC--cccccc--cCCCCceEEecccc
Q 040471 170 IRLDSLKKLTLENVYI-NDQMFQKLTNECPSLEDFEISACWGL--KNLCVS--KAHKLKKLAIYTFY 231 (340)
Q Consensus 170 ~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~L~~L~l~~c~~~--~~~~~~--~~~~L~~L~i~~~~ 231 (340)
.++|.+..++|++++. ..+++..+....|+|..|+|++.... ....+. +...|++|-+.|++
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNP 281 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNP 281 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCc
Confidence 4678888888888888 77788888888888888888876221 111111 23556666666655
No 82
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=80.15 E-value=1.3 Score=31.63 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=23.1
Q ss_pred CccCCCchhHHHHHhcCCchhhhhhh
Q 040471 8 DRITELPTFIIHHIMSYLSAKEIART 33 (340)
Q Consensus 8 d~i~~LPd~il~~Ifs~L~~~d~~~~ 33 (340)
..|..||.||-..|+++|+-+|+...
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~l 95 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKKL 95 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHHH
Confidence 56999999999999999999998643
No 83
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=77.74 E-value=1.3 Score=33.17 Aligned_cols=77 Identities=16% Similarity=0.252 Sum_probs=27.3
Q ss_pred CCCCccEEEeece--eCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEeccc-CCCcccccccCCCCc
Q 040471 147 SAKSMATLSLFGC--RMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISAC-WGLKNLCVSKAHKLK 223 (340)
Q Consensus 147 ~~~~L~~L~L~~~--~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c-~~~~~~~~~~~~~L~ 223 (340)
.|.+|+.+.+... .+.. .....+++|+.+++......-. ...+..|+.|+.+.+... ..+..-....+++|+
T Consensus 10 ~~~~l~~i~~~~~~~~I~~---~~F~~~~~l~~i~~~~~~~~i~--~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 10 NCSNLESITFPNTIKKIGE---NAFSNCTSLKSINFPNNLTSIG--DNAFSNCKSLESITFPNNLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp T-TT--EEEETST--EE-T---TTTTT-TT-SEEEESSTTSCE---TTTTTT-TT-EEEEETSTT-EE-TTTTTT-TTEC
T ss_pred CCCCCCEEEECCCeeEeCh---hhcccccccccccccccccccc--eeeeeccccccccccccccccccccccccccccc
Confidence 3556666665531 1221 1234455566665554211110 112345555666666431 112222233345555
Q ss_pred eEEec
Q 040471 224 KLAIY 228 (340)
Q Consensus 224 ~L~i~ 228 (340)
.+.+.
T Consensus 85 ~i~~~ 89 (129)
T PF13306_consen 85 NIDIP 89 (129)
T ss_dssp EEEET
T ss_pred ccccC
Confidence 55553
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=75.43 E-value=2.8 Score=22.14 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=16.2
Q ss_pred cccceEecceEeeChHHHHHHHh
Q 040471 173 DSLKKLTLENVYINDQMFQKLTN 195 (340)
Q Consensus 173 ~~L~~L~L~~~~~~~~~l~~l~~ 195 (340)
++|++|+|+++.+.+++...+..
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 56777888877777766666544
No 85
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=72.90 E-value=0.41 Score=45.11 Aligned_cols=32 Identities=16% Similarity=0.178 Sum_probs=18.3
Q ss_pred CcccEEecccCCCCccccccc---ccccEEEeecCc
Q 040471 268 PLLEDLLLRFCRLPEKVKISS---NQLKNLHFNSCE 300 (340)
Q Consensus 268 ~~L~~L~l~~c~~i~~~~~~~---~~L~~L~l~~c~ 300 (340)
-.|..|+++ |..+..+++.+ ..|++|.|.+++
T Consensus 211 LpLi~lDfS-cNkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 211 LPLIRLDFS-CNKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred Cceeeeecc-cCceeecchhhhhhhhheeeeeccCC
Confidence 346666776 55566666654 445555555543
No 86
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=70.77 E-value=0.85 Score=38.63 Aligned_cols=48 Identities=13% Similarity=0.159 Sum_probs=36.9
Q ss_pred ccCCCchhHHHHHhcCCc-hhhhhhhhcccccc------hhhhcccceEEEeccc
Q 040471 9 RITELPTFIIHHIMSYLS-AKEIARTSILSKRW------CLFCISFPILEFDQCY 56 (340)
Q Consensus 9 ~i~~LPd~il~~Ifs~L~-~~d~~~~s~vskrW------~~l~~~~~~l~~~~~~ 56 (340)
-+.+||.+++..|+.+|+ -+|+..++.|-..- +++|+..-.+.|.+..
T Consensus 201 tl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQ 255 (332)
T KOG3926|consen 201 TLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQ 255 (332)
T ss_pred CcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 389999999999999998 89999998875444 2467666666665544
No 87
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=68.90 E-value=15 Score=27.17 Aligned_cols=12 Identities=17% Similarity=0.207 Sum_probs=6.2
Q ss_pred cCCCcccEEecc
Q 040471 265 SKFPLLEDLLLR 276 (340)
Q Consensus 265 ~~~~~L~~L~l~ 276 (340)
..+++|+.+.+.
T Consensus 78 ~~~~~l~~i~~~ 89 (129)
T PF13306_consen 78 SNCTNLKNIDIP 89 (129)
T ss_dssp TT-TTECEEEET
T ss_pred cccccccccccC
Confidence 345666666654
No 88
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=68.44 E-value=1.5 Score=41.50 Aligned_cols=101 Identities=19% Similarity=0.193 Sum_probs=65.8
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS 199 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 199 (340)
..++.|.+..++. ..+|..+....+|..|+.+.|.+.. .++....+.+|+.|++..+++.+ -.+.+. +=.
T Consensus 143 lpLkvli~sNNkl------~~lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~~-lp~El~--~Lp 212 (722)
T KOG0532|consen 143 LPLKVLIVSNNKL------TSLPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLED-LPEELC--SLP 212 (722)
T ss_pred CcceeEEEecCcc------ccCCcccccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhhh-CCHHHh--CCc
Confidence 4667777665544 5677777767788888888877654 23345567778888777765411 112222 556
Q ss_pred CcEEEecccCCCccc--ccccCCCCceEEecccc
Q 040471 200 LEDFEISACWGLKNL--CVSKAHKLKKLAIYTFY 231 (340)
Q Consensus 200 L~~L~l~~c~~~~~~--~~~~~~~L~~L~i~~~~ 231 (340)
|..|+++. .++..+ ++.++..|++|.++++.
T Consensus 213 Li~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 213 LIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred eeeeeccc-CceeecchhhhhhhhheeeeeccCC
Confidence 78888884 455443 56677899999998876
No 89
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=53.78 E-value=1.3 Score=33.99 Aligned_cols=36 Identities=22% Similarity=0.164 Sum_probs=16.9
Q ss_pred HcCCCcccEEecccCCCCcccccc---cccccEEEeecCc
Q 040471 264 ISKFPLLEDLLLRFCRLPEKVKIS---SNQLKNLHFNSCE 300 (340)
Q Consensus 264 ~~~~~~L~~L~l~~c~~i~~~~~~---~~~L~~L~l~~c~ 300 (340)
...+|.++.|.+.+ ..+.+++.. +|.|++|++++++
T Consensus 73 t~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 73 TIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFNP 111 (177)
T ss_pred hhccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccCc
Confidence 34444555555553 224444443 3555555555444
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=51.41 E-value=8.7 Score=36.39 Aligned_cols=57 Identities=19% Similarity=0.277 Sum_probs=28.8
Q ss_pred CCCccEEEeece--eCCCCCCcccccCcccceEecceEee-C-----hHHHHHHHhcCCCCcEEE
Q 040471 148 AKSMATLSLFGC--RMEQPSDTTTIRLDSLKKLTLENVYI-N-----DQMFQKLTNECPSLEDFE 204 (340)
Q Consensus 148 ~~~L~~L~L~~~--~~~~~~~~~~~~~~~L~~L~L~~~~~-~-----~~~l~~l~~~~p~L~~L~ 204 (340)
.|+|..|+|+++ .+.......-.....|++|-|.++.+ + .+.+.++...+|+|..|+
T Consensus 243 apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 243 APKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred cchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHHHHHhcchheeec
Confidence 566666666665 33322222222345566666666554 1 133445555666665553
No 91
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=50.90 E-value=3.7 Score=31.59 Aligned_cols=46 Identities=15% Similarity=0.157 Sum_probs=19.2
Q ss_pred ccCCccccC-CCCccEEEeeceeCCCCCCcccccCcccceEecceEee
Q 040471 139 CILPQTIFS-AKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYI 185 (340)
Q Consensus 139 ~~l~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 185 (340)
..+|+.+.. .+.++.|+++++.+.+. +.-.+.+|.|+.|++..+.+
T Consensus 66 k~fp~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 66 KKFPKKFTIKFPTATTLNLANNEISDV-PEELAAMPALRSLNLRFNPL 112 (177)
T ss_pred hhCCHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhcccccCcc
Confidence 444444332 23455555555444331 11233444444444444433
No 92
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=47.03 E-value=6.3 Score=34.69 Aligned_cols=40 Identities=20% Similarity=0.381 Sum_probs=34.8
Q ss_pred cCCCchhHHHHHhcCCchhhhhhhhcccccchhhhcccce
Q 040471 10 ITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCISFPI 49 (340)
Q Consensus 10 i~~LPd~il~~Ifs~L~~~d~~~~s~vskrW~~l~~~~~~ 49 (340)
...+|++++..|++++..++++++|.|++|-..+-+..+.
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~l 47 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPL 47 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhcccc
Confidence 5679999999999999999999999999999876554443
No 93
>PF01827 FTH: FTH domain; InterPro: IPR002900 This domain has no known function, it is presumed to be a protein-protein interaction module. It is found in many proteins from Caenorhabditis elegans and Caenorhabditis briggsae. The domain is found associated with, and C-terminal to, the cyclin-like F-box IPR001810 from INTERPRO.
Probab=38.13 E-value=1.2e+02 Score=22.72 Aligned_cols=117 Identities=10% Similarity=0.126 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhhhccCcccceEEEEEeccCcCCChhhHHHHHHHHHHcCccEEEEEeecCCCCCccccCCcc--ccCCCC
Q 040471 73 FMAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKDLVLMVHNMTQEDTVCILPQT--IFSAKS 150 (340)
Q Consensus 73 ~~~~v~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~--~~~~~~ 150 (340)
+.+.+..++ .. .....++++.+... ....+..++...-...|++|.+ .... ....+... ....++
T Consensus 3 ~~~~l~~~l-~s-~~~l~vk~l~i~~~------~~~~~~~iL~~l~p~~L~~i~i-~~~~----~~~~~~~i~~~eqWk~ 69 (142)
T PF01827_consen 3 FFEKLQEIL-KS-KHKLKVKKLKINSL------NQSEVLSILPFLDPGVLEEIRI-NDEE----EEEDFDEIVELEQWKN 69 (142)
T ss_pred HHHHHHHHH-cC-CCCeeEEEEEEEcC------CHHHHHHHHhcCCCCcCEEEEC-cCcc----cccchhheeehHHhce
Confidence 445566666 22 44466777777633 3336667777766678999999 1111 12223322 233688
Q ss_pred ccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHH---HHhcCCCCcEEEe
Q 040471 151 MATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQK---LTNECPSLEDFEI 205 (340)
Q Consensus 151 L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~---l~~~~p~L~~L~l 205 (340)
++.+.+.+..... .....+..++...+.--.++.+.+.. .+...|+.+...+
T Consensus 70 ~k~~~i~~~~~~~---~~l~~f~h~~~~~i~~~~~t~~di~~l~~~l~~~~~~~~~~i 124 (142)
T PF01827_consen 70 AKEFKIGGFVIDS---FPLENFSHFEKFNIHFESITVEDIWKLKENLLKSPNFKYFRI 124 (142)
T ss_pred eheeEeccccccc---HHHHhCCCccEEEEEEEeCCHHHHHHHHHHHcCCCCceEEEE
Confidence 8888887754421 13445667777777433445444444 3445566666666
No 94
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=29.22 E-value=41 Score=16.91 Aligned_cols=16 Identities=25% Similarity=0.250 Sum_probs=9.4
Q ss_pred CcccEEecccCCCCccc
Q 040471 268 PLLEDLLLRFCRLPEKV 284 (340)
Q Consensus 268 ~~L~~L~l~~c~~i~~~ 284 (340)
++|++|+++++. ++.+
T Consensus 2 ~~L~~L~L~~N~-l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQ-LSSL 17 (26)
T ss_pred CCCCEEECCCCc-CCcC
Confidence 567777777553 4433
No 95
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=29.22 E-value=41 Score=16.91 Aligned_cols=16 Identities=25% Similarity=0.250 Sum_probs=9.4
Q ss_pred CcccEEecccCCCCccc
Q 040471 268 PLLEDLLLRFCRLPEKV 284 (340)
Q Consensus 268 ~~L~~L~l~~c~~i~~~ 284 (340)
++|++|+++++. ++.+
T Consensus 2 ~~L~~L~L~~N~-l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQ-LSSL 17 (26)
T ss_pred CCCCEEECCCCc-CCcC
Confidence 567777777553 4433
No 96
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=28.08 E-value=31 Score=30.73 Aligned_cols=39 Identities=8% Similarity=0.235 Sum_probs=32.2
Q ss_pred CccCCCchhHHHHHhcCCch--------hhhhhhhcccccchhhhcc
Q 040471 8 DRITELPTFIIHHIMSYLSA--------KEIARTSILSKRWCLFCIS 46 (340)
Q Consensus 8 d~i~~LPd~il~~Ifs~L~~--------~d~~~~s~vskrW~~l~~~ 46 (340)
..|.+||.+.|..|+.+... +..++|+-||+.|+....+
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 47999999999999999963 2457889999999987553
No 97
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=25.83 E-value=83 Score=26.28 Aligned_cols=40 Identities=15% Similarity=0.372 Sum_probs=27.6
Q ss_pred ccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccC
Q 040471 170 IRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACW 209 (340)
Q Consensus 170 ~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~ 209 (340)
.+|.+|+.-++.+..+....++.+---|.++|--.+.+|.
T Consensus 168 L~ca~lerADl~gsil~cA~L~~v~~lcaN~eGA~L~gcN 207 (302)
T KOG1665|consen 168 LQCAKLERADLEGSILHCAILREVEMLCANAEGASLKGCN 207 (302)
T ss_pred hhhhhhcccccccchhhhhhhhhhhheecccccccccCcC
Confidence 3567777777777666666666666667777777777773
No 98
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=24.87 E-value=74 Score=19.42 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=24.7
Q ss_pred cccceEecceEeeC---hHHHHHHHhcCCCCcEEEec
Q 040471 173 DSLKKLTLENVYIN---DQMFQKLTNECPSLEDFEIS 206 (340)
Q Consensus 173 ~~L~~L~L~~~~~~---~~~l~~l~~~~p~L~~L~l~ 206 (340)
.+|+.+.+.+.... -+-+..++.+.+.|+.+.+.
T Consensus 14 s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 14 SHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred heeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 67888888766652 23456678889999988775
No 99
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=22.09 E-value=66 Score=16.76 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=11.2
Q ss_pred HHHHhcCCCCcEEEecc
Q 040471 191 QKLTNECPSLEDFEISA 207 (340)
Q Consensus 191 ~~l~~~~p~L~~L~l~~ 207 (340)
+.++..+|+|+.|+...
T Consensus 6 ~~Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 6 EKVIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHHHCCccceecccc
Confidence 34566778888777543
Done!