Query 040471
Match_columns 340
No_of_seqs 158 out of 1989
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 13:58:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040471.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040471hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ast_B S-phase kinase-associat 99.9 1.9E-26 6.4E-31 205.9 9.8 39 7-45 6-44 (336)
2 2p1m_B Transport inhibitor res 99.9 2.9E-23 1E-27 199.1 15.1 276 6-297 2-346 (594)
3 3ogk_B Coronatine-insensitive 99.9 3E-23 1E-27 199.0 14.7 196 2-209 1-231 (592)
4 4fcg_A Uncharacterized protein 99.6 1.6E-14 5.3E-19 128.2 12.4 193 119-323 80-290 (328)
5 2ast_B S-phase kinase-associat 99.5 6.4E-16 2.2E-20 137.5 0.9 201 112-320 62-282 (336)
6 3ogk_B Coronatine-insensitive 99.4 1.6E-13 5.5E-18 131.3 4.8 67 255-322 450-525 (592)
7 4fcg_A Uncharacterized protein 99.4 9.5E-13 3.2E-17 116.6 8.3 216 88-321 80-312 (328)
8 4fmz_A Internalin; leucine ric 99.4 1.2E-11 4E-16 110.3 14.5 169 145-324 106-279 (347)
9 3rgz_A Protein brassinosteroid 99.3 3.2E-12 1.1E-16 126.1 10.1 195 120-321 100-305 (768)
10 4fmz_A Internalin; leucine ric 99.3 2.2E-11 7.6E-16 108.5 13.9 200 120-337 110-338 (347)
11 1ogq_A PGIP-2, polygalacturona 99.3 7E-12 2.4E-16 110.3 10.0 197 120-323 76-281 (313)
12 1h6u_A Internalin H; cell adhe 99.3 2.4E-11 8.2E-16 106.6 12.6 186 120-324 41-231 (308)
13 3t6q_A CD180 antigen; protein- 99.3 2.3E-12 7.9E-17 123.7 6.3 83 120-208 278-360 (606)
14 1wwl_A Monocyte differentiatio 99.3 1.5E-11 5.2E-16 108.1 9.3 176 147-324 93-288 (312)
15 4glp_A Monocyte differentiatio 99.2 7.8E-12 2.7E-16 109.8 7.2 221 90-322 65-306 (310)
16 3zyi_A Leucine-rich repeat-con 99.2 1.6E-11 5.4E-16 113.7 9.3 195 120-324 99-304 (452)
17 1o6v_A Internalin A; bacterial 99.2 7.3E-11 2.5E-15 109.6 13.3 186 120-324 90-279 (466)
18 3v47_A TOLL-like receptor 5B a 99.2 6.4E-11 2.2E-15 109.5 12.6 67 142-208 96-164 (455)
19 2p1m_B Transport inhibitor res 99.2 5.6E-12 1.9E-16 120.6 5.5 77 241-319 455-540 (594)
20 3o53_A Protein LRIM1, AGAP0063 99.2 2.5E-11 8.5E-16 106.9 9.2 163 120-299 34-201 (317)
21 3zyj_A Leucine-rich repeat-con 99.2 2.8E-11 9.6E-16 111.6 9.8 193 120-323 88-292 (440)
22 2id5_A Lingo-1, leucine rich r 99.2 5.8E-11 2E-15 110.5 12.0 194 120-323 104-309 (477)
23 1wwl_A Monocyte differentiatio 99.2 1.3E-11 4.4E-16 108.5 6.6 199 115-323 90-309 (312)
24 1o6v_A Internalin A; bacterial 99.2 1.2E-10 4.2E-15 108.1 13.4 39 145-185 173-211 (466)
25 1ozn_A Reticulon 4 receptor; N 99.2 2E-11 6.7E-16 105.9 7.3 194 120-323 32-238 (285)
26 3oja_A Leucine-rich immune mol 99.2 2.3E-11 8E-16 113.5 8.2 163 121-299 35-201 (487)
27 2z66_A Variable lymphocyte rec 99.2 5.9E-12 2E-16 110.3 3.8 198 120-324 52-262 (306)
28 3zyi_A Leucine-rich repeat-con 99.2 2.8E-11 9.6E-16 112.0 8.3 193 120-324 75-280 (452)
29 2ca6_A RAN GTPase-activating p 99.2 2.2E-11 7.6E-16 110.3 6.8 201 120-324 60-317 (386)
30 1z7x_W Ribonuclease inhibitor; 99.2 1.9E-11 6.4E-16 113.2 6.5 82 240-323 225-326 (461)
31 2id5_A Lingo-1, leucine rich r 99.2 6.3E-11 2.1E-15 110.3 9.9 196 120-323 56-261 (477)
32 3o6n_A APL1; leucine-rich repe 99.2 1.5E-10 5.1E-15 104.9 12.0 62 146-208 114-175 (390)
33 1ogq_A PGIP-2, polygalacturona 99.2 2.3E-11 7.8E-16 107.0 6.3 216 89-321 76-302 (313)
34 3zyj_A Leucine-rich repeat-con 99.2 4.3E-11 1.5E-15 110.3 8.3 193 120-324 64-269 (440)
35 1h6u_A Internalin H; cell adhe 99.2 1.7E-10 5.8E-15 101.2 11.6 163 120-300 63-228 (308)
36 1fs1_A SKP2 F-BOX, cyclin A/CD 99.2 1.4E-11 4.7E-16 77.7 3.3 40 6-45 5-44 (53)
37 2z80_A TOLL-like receptor 2, v 99.2 2.6E-11 9E-16 108.4 6.1 153 120-279 76-233 (353)
38 1xku_A Decorin; proteoglycan, 99.1 4E-10 1.4E-14 99.7 12.9 189 120-323 76-276 (330)
39 4eco_A Uncharacterized protein 99.1 1.8E-10 6.1E-15 111.1 11.4 175 120-300 206-413 (636)
40 2z66_A Variable lymphocyte rec 99.1 3.7E-11 1.3E-15 105.2 6.1 172 120-300 78-259 (306)
41 2z80_A TOLL-like receptor 2, v 99.1 3.6E-11 1.2E-15 107.5 6.0 171 120-300 52-233 (353)
42 3o6n_A APL1; leucine-rich repe 99.1 2.4E-10 8.1E-15 103.6 11.5 192 119-324 68-286 (390)
43 4ezg_A Putative uncharacterize 99.1 4.5E-10 1.5E-14 91.7 11.9 146 148-322 43-193 (197)
44 3oja_B Anopheles plasmodium-re 99.1 2.9E-10 1E-14 108.9 12.0 62 146-208 120-181 (597)
45 1z7x_W Ribonuclease inhibitor; 99.1 2.9E-11 9.8E-16 112.0 4.6 225 89-324 3-270 (461)
46 2z63_A TOLL-like receptor 4, v 99.1 1.8E-10 6.3E-15 109.5 10.1 195 120-324 282-508 (570)
47 3rgz_A Protein brassinosteroid 99.1 1.7E-11 6E-16 120.8 2.7 196 120-322 74-281 (768)
48 3e4g_A ATP synthase subunit S, 99.1 1.2E-10 4E-15 92.3 6.9 94 138-231 50-150 (176)
49 2z62_A TOLL-like receptor 4, v 99.1 7.7E-11 2.6E-15 101.6 6.3 195 120-324 28-238 (276)
50 4glp_A Monocyte differentiatio 99.1 4.5E-10 1.6E-14 98.5 11.3 211 120-338 64-300 (310)
51 2z81_A CD282 antigen, TOLL-lik 99.1 4.5E-10 1.6E-14 106.3 12.1 189 120-324 310-511 (549)
52 3oja_B Anopheles plasmodium-re 99.1 3.6E-10 1.2E-14 108.2 11.5 195 120-324 75-292 (597)
53 1h6t_A Internalin B; cell adhe 99.1 4.4E-10 1.5E-14 97.7 10.9 163 120-300 46-211 (291)
54 3bz5_A Internalin-J, INLJ; leu 99.1 5.9E-10 2E-14 103.1 12.4 157 120-299 85-243 (457)
55 1ozn_A Reticulon 4 receptor; N 99.1 2.7E-10 9.1E-15 98.7 9.4 181 138-324 23-215 (285)
56 2o6q_A Variable lymphocyte rec 99.1 2.5E-10 8.6E-15 98.1 9.1 59 264-323 153-218 (270)
57 3t6q_A CD180 antigen; protein- 99.1 1.5E-10 5.1E-15 111.0 8.3 196 120-322 301-512 (606)
58 3vq2_A TLR4, TOLL-like recepto 99.1 2.5E-10 8.4E-15 109.5 9.8 174 147-323 326-534 (606)
59 3v47_A TOLL-like receptor 5B a 99.1 5.2E-10 1.8E-14 103.4 11.6 105 217-324 296-409 (455)
60 4ecn_A Leucine-rich repeat pro 99.1 4.9E-10 1.7E-14 111.0 11.7 175 120-300 448-655 (876)
61 2z63_A TOLL-like receptor 4, v 99.1 6.8E-11 2.3E-15 112.4 5.1 175 146-324 344-532 (570)
62 1h6t_A Internalin B; cell adhe 99.1 8.4E-10 2.9E-14 95.9 11.5 166 146-323 43-213 (291)
63 2ca6_A RAN GTPase-activating p 99.1 1.5E-10 5.1E-15 104.8 6.6 212 109-324 20-288 (386)
64 3bz5_A Internalin-J, INLJ; leu 99.1 8.8E-10 3E-14 102.0 11.8 181 120-324 64-247 (457)
65 3vq2_A TLR4, TOLL-like recepto 99.1 3.1E-10 1E-14 108.8 9.0 147 120-280 285-436 (606)
66 2z7x_B TOLL-like receptor 1, v 99.0 3.1E-09 1.1E-13 99.9 15.3 218 89-324 220-482 (520)
67 2o6q_A Variable lymphocyte rec 99.0 5.5E-10 1.9E-14 95.9 9.1 171 120-300 37-216 (270)
68 4ezg_A Putative uncharacterize 99.0 5.4E-10 1.9E-14 91.2 8.1 145 119-299 43-191 (197)
69 4eco_A Uncharacterized protein 99.0 7.2E-10 2.4E-14 106.9 9.9 147 171-323 431-600 (636)
70 1m9s_A Internalin B; cell inva 99.0 8.4E-10 2.9E-14 105.4 10.2 165 119-301 42-209 (605)
71 1xku_A Decorin; proteoglycan, 99.0 7.1E-10 2.4E-14 98.1 9.0 192 120-323 100-306 (330)
72 2z7x_B TOLL-like receptor 1, v 99.0 7.1E-09 2.4E-13 97.5 16.2 177 120-300 220-410 (520)
73 2z81_A CD282 antigen, TOLL-lik 99.0 3.5E-09 1.2E-13 100.2 14.0 169 148-324 309-487 (549)
74 3g06_A SSPH2 (leucine-rich rep 99.0 2.8E-09 9.5E-14 102.0 13.1 71 120-208 81-151 (622)
75 1m9s_A Internalin B; cell inva 99.0 7.3E-10 2.5E-14 105.8 9.1 145 119-280 64-209 (605)
76 2xwt_C Thyrotropin receptor; s 99.0 3.4E-10 1.2E-14 95.4 6.1 11 310-320 205-215 (239)
77 3rfs_A Internalin B, repeat mo 99.0 1.3E-09 4.6E-14 93.6 9.6 184 119-319 40-231 (272)
78 2z62_A TOLL-like receptor 4, v 99.0 6.9E-10 2.4E-14 95.6 7.6 182 138-324 19-214 (276)
79 3g06_A SSPH2 (leucine-rich rep 99.0 1.9E-09 6.6E-14 103.1 11.3 92 120-231 61-152 (622)
80 4ecn_A Leucine-rich repeat pro 99.0 2.2E-10 7.6E-15 113.4 4.7 104 120-231 491-606 (876)
81 2xwt_C Thyrotropin receptor; s 99.0 9.6E-10 3.3E-14 92.6 7.8 103 120-231 55-167 (239)
82 3rfs_A Internalin B, repeat mo 99.0 5.9E-10 2E-14 95.9 6.5 85 145-231 81-168 (272)
83 3goz_A Leucine-rich repeat-con 99.0 8.5E-10 2.9E-14 98.9 7.8 229 89-324 22-298 (362)
84 3oja_A Leucine-rich immune mol 99.0 1.3E-09 4.5E-14 101.7 9.3 166 148-324 33-205 (487)
85 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 2.6E-08 9E-13 94.5 18.0 82 218-300 351-439 (562)
86 3j0a_A TOLL-like receptor 5; m 98.9 2.6E-09 8.8E-14 106.4 10.9 84 120-208 73-158 (844)
87 3o53_A Protein LRIM1, AGAP0063 98.9 1.1E-09 3.9E-14 96.2 7.3 165 147-324 32-205 (317)
88 2ell_A Acidic leucine-rich nuc 98.9 2.2E-09 7.4E-14 85.2 8.2 131 120-280 24-159 (168)
89 1p9a_G Platelet glycoprotein I 98.9 1.2E-09 4E-14 94.9 6.8 169 149-324 31-209 (290)
90 3goz_A Leucine-rich repeat-con 98.9 1.5E-09 5.1E-14 97.3 7.7 198 120-321 22-264 (362)
91 3e4g_A ATP synthase subunit S, 98.9 2.8E-10 9.7E-15 90.0 2.4 92 172-287 60-158 (176)
92 1ziw_A TOLL-like receptor 3; i 98.9 3.2E-09 1.1E-13 103.2 10.0 197 120-323 49-285 (680)
93 1ziw_A TOLL-like receptor 3; i 98.9 9.9E-10 3.4E-14 106.8 6.1 83 120-208 381-464 (680)
94 3j0a_A TOLL-like receptor 5; m 98.9 3.2E-09 1.1E-13 105.7 9.8 172 120-299 266-461 (844)
95 2ft3_A Biglycan; proteoglycan, 98.9 4.5E-09 1.5E-13 93.0 9.2 189 120-324 78-278 (332)
96 2je0_A Acidic leucine-rich nuc 98.9 3E-09 1E-13 82.6 6.8 127 120-276 17-148 (149)
97 2ft3_A Biglycan; proteoglycan, 98.9 3.3E-09 1.1E-13 93.8 7.9 191 120-323 102-307 (332)
98 1jl5_A Outer protein YOPM; leu 98.9 7E-09 2.4E-13 95.8 10.2 52 267-320 256-307 (454)
99 1p9a_G Platelet glycoprotein I 98.9 6.7E-09 2.3E-13 90.1 9.3 186 145-337 6-200 (290)
100 3m19_A Variable lymphocyte rec 98.8 3.5E-09 1.2E-13 89.8 6.7 155 139-299 27-189 (251)
101 3a79_B TLR6, VLRB.59, TOLL-lik 98.8 3E-08 1E-12 94.2 13.5 166 149-324 331-511 (562)
102 1jl5_A Outer protein YOPM; leu 98.8 3.5E-08 1.2E-12 91.2 11.9 55 120-185 131-185 (454)
103 2ra8_A Uncharacterized protein 98.8 5.5E-08 1.9E-12 86.8 11.9 155 71-231 91-263 (362)
104 1xeu_A Internalin C; cellular 98.8 3.1E-08 1.1E-12 84.6 9.5 143 119-279 40-183 (263)
105 2je0_A Acidic leucine-rich nuc 98.7 4.8E-09 1.6E-13 81.4 3.7 123 148-297 16-148 (149)
106 2ell_A Acidic leucine-rich nuc 98.7 4.1E-09 1.4E-13 83.6 3.1 81 148-231 23-106 (168)
107 3m19_A Variable lymphocyte rec 98.7 8.4E-09 2.9E-13 87.5 4.7 151 120-280 35-191 (251)
108 1xeu_A Internalin C; cellular 98.7 1.2E-08 4.1E-13 87.2 5.7 144 145-300 37-183 (263)
109 3cvr_A Invasion plasmid antige 98.7 8.8E-08 3E-12 90.6 10.1 176 120-324 59-244 (571)
110 4ay9_X Follicle-stimulating ho 98.6 2.6E-08 9E-13 88.8 6.2 188 120-319 30-232 (350)
111 3un9_A NLR family member X1; l 98.6 1E-08 3.4E-13 92.2 3.1 159 117-301 69-251 (372)
112 1ds9_A Outer arm dynein; leuci 98.6 5.5E-09 1.9E-13 85.3 0.9 86 141-230 40-125 (198)
113 2o6s_A Variable lymphocyte rec 98.6 2.3E-08 8E-13 82.1 3.8 90 139-231 20-111 (208)
114 3cvr_A Invasion plasmid antige 98.6 2.7E-07 9.2E-12 87.3 10.8 169 148-337 58-235 (571)
115 2o6s_A Variable lymphocyte rec 98.5 6E-08 2E-12 79.6 5.2 105 120-231 28-135 (208)
116 3e6j_A Variable lymphocyte rec 98.5 1.2E-07 4E-12 79.2 5.9 90 138-231 31-123 (229)
117 2v9t_B SLIT homolog 2 protein 98.5 3.2E-07 1.1E-11 76.0 7.4 91 138-231 23-115 (220)
118 1a9n_A U2A', U2A'; complex (nu 98.4 3.6E-07 1.2E-11 72.8 6.0 81 145-231 15-99 (176)
119 4g8a_A TOLL-like receptor 4; l 98.4 1.8E-06 6.3E-11 82.7 11.6 151 120-278 52-211 (635)
120 1a9n_A U2A', U2A'; complex (nu 98.4 1.4E-07 4.6E-12 75.4 2.9 62 168-231 14-75 (176)
121 2v9t_B SLIT homolog 2 protein 98.4 3E-07 1E-11 76.3 5.0 105 120-231 32-139 (220)
122 2ra8_A Uncharacterized protein 98.4 1.7E-06 5.8E-11 77.1 9.9 133 189-323 163-320 (362)
123 4g8a_A TOLL-like receptor 4; l 98.3 6.9E-07 2.4E-11 85.6 6.9 151 171-324 418-581 (635)
124 2v70_A SLIT-2, SLIT homolog 2 98.3 7.5E-07 2.6E-11 73.8 6.2 81 150-231 33-116 (220)
125 3un9_A NLR family member X1; l 98.3 3.6E-07 1.2E-11 82.0 4.5 136 120-284 101-254 (372)
126 2e31_A FBS1, F-box only protei 98.3 2.6E-07 9E-12 79.0 3.1 38 8-45 49-87 (297)
127 3l2o_B F-box only protein 4; s 98.3 1.4E-07 4.9E-12 79.7 1.3 36 8-43 3-38 (312)
128 2xot_A Amphoterin-induced prot 98.2 7.4E-07 2.5E-11 79.7 5.0 155 139-299 31-199 (361)
129 2xot_A Amphoterin-induced prot 98.2 8.6E-07 2.9E-11 79.2 4.4 150 121-279 40-200 (361)
130 2v70_A SLIT-2, SLIT homolog 2 98.2 1.4E-06 4.8E-11 72.1 5.3 143 152-300 14-164 (220)
131 4ay9_X Follicle-stimulating ho 98.2 2.7E-06 9.4E-11 75.6 7.0 191 120-318 54-254 (350)
132 3sb4_A Hypothetical leucine ri 98.2 2.7E-06 9.3E-11 74.9 6.9 95 241-339 225-328 (329)
133 3v7d_B Cell division control p 98.2 4.6E-07 1.6E-11 83.4 1.6 43 4-46 9-51 (464)
134 3e6j_A Variable lymphocyte rec 98.2 2.7E-06 9.4E-11 70.8 6.2 105 120-231 40-146 (229)
135 1ds9_A Outer arm dynein; leuci 98.1 8.1E-07 2.8E-11 72.2 2.5 102 119-231 47-151 (198)
136 1dce_A Protein (RAB geranylger 98.1 4.6E-06 1.6E-10 79.0 7.0 101 120-231 441-544 (567)
137 2o6r_A Variable lymphocyte rec 98.0 9.7E-06 3.3E-10 64.4 6.6 82 149-231 28-111 (177)
138 2wfh_A SLIT homolog 2 protein 98.0 7.2E-06 2.5E-10 66.3 5.9 104 121-231 32-137 (193)
139 1dce_A Protein (RAB geranylger 98.0 7.4E-06 2.5E-10 77.6 5.7 54 174-231 442-497 (567)
140 4b8c_D Glucose-repressible alc 97.9 2.3E-06 7.8E-11 83.6 2.0 114 140-258 215-331 (727)
141 1p22_A F-BOX/WD-repeat protein 97.9 2.5E-06 8.6E-11 77.9 1.3 39 5-43 6-48 (435)
142 2ovr_B FBW7, F-BOX/WD repeat p 97.9 5.4E-06 1.9E-10 75.8 3.4 38 6-43 15-52 (445)
143 1io0_A Tropomodulin; LRR prote 97.9 1.1E-05 3.6E-10 64.9 4.6 62 147-208 34-103 (185)
144 2wfh_A SLIT homolog 2 protein 97.9 2E-05 7E-10 63.6 6.3 89 139-231 23-113 (193)
145 1w8a_A SLIT protein; signaling 97.8 2.1E-05 7.1E-10 63.5 5.9 90 139-231 21-113 (192)
146 3sb4_A Hypothetical leucine ri 97.8 7.3E-05 2.5E-09 65.7 9.7 51 264-316 269-327 (329)
147 2o6r_A Variable lymphocyte rec 97.8 2.3E-05 7.7E-10 62.3 5.3 104 120-231 28-135 (177)
148 1w8a_A SLIT protein; signaling 97.8 1.9E-05 6.3E-10 63.8 4.5 104 121-231 30-137 (192)
149 4b8c_D Glucose-repressible alc 97.7 1.3E-05 4.4E-10 78.3 2.5 102 120-231 224-327 (727)
150 1io0_A Tropomodulin; LRR prote 97.6 8.6E-05 2.9E-09 59.5 5.9 60 171-231 34-104 (185)
151 3g39_A Variable lymphocyte rec 97.6 9.1E-05 3.1E-09 58.4 5.4 90 139-231 22-113 (170)
152 2r9u_A Variable lymphocyte rec 97.5 0.00013 4.4E-09 57.8 5.9 90 139-231 25-116 (174)
153 4fdw_A Leucine rich hypothetic 97.4 0.00046 1.6E-08 62.3 9.0 58 264-324 296-359 (401)
154 4fdw_A Leucine rich hypothetic 97.3 0.00033 1.1E-08 63.3 6.7 12 265-276 320-331 (401)
155 2r9u_A Variable lymphocyte rec 97.1 0.00032 1.1E-08 55.5 3.3 84 120-210 33-117 (174)
156 3g39_A Variable lymphocyte rec 96.9 0.00077 2.6E-08 53.0 4.4 83 120-209 30-113 (170)
157 3rw6_A Nuclear RNA export fact 96.8 0.0012 4E-08 55.9 4.8 16 261-276 244-259 (267)
158 2ifg_A High affinity nerve gro 96.6 0.0016 5.4E-08 57.4 4.5 90 138-231 21-114 (347)
159 3rw6_A Nuclear RNA export fact 96.3 0.0014 4.8E-08 55.4 2.3 59 148-208 169-230 (267)
160 2ifg_A High affinity nerve gro 95.0 0.0081 2.8E-07 52.8 2.1 80 121-208 32-113 (347)
161 1pgv_A TMD-1, tropomodulin TMD 94.9 0.062 2.1E-06 43.0 6.6 50 249-298 104-166 (197)
162 1pgv_A TMD-1, tropomodulin TMD 94.4 0.015 5.2E-07 46.5 1.9 100 109-208 28-136 (197)
163 4fs7_A Uncharacterized protein 94.2 0.22 7.5E-06 44.4 9.5 78 144-229 225-306 (394)
164 4gt6_A Cell surface protein; l 93.9 0.065 2.2E-06 47.9 5.3 121 168-319 260-387 (394)
165 4gt6_A Cell surface protein; l 93.8 0.11 3.8E-06 46.3 6.7 100 215-320 260-367 (394)
166 4fs7_A Uncharacterized protein 93.5 0.2 6.8E-06 44.7 7.8 169 140-320 175-376 (394)
167 4h09_A Hypothetical leucine ri 80.6 2.5 8.7E-05 37.0 5.9 33 264-297 282-318 (379)
168 4h09_A Hypothetical leucine ri 74.8 1.4 4.8E-05 38.7 2.4 98 145-247 236-338 (379)
169 3rfe_A Platelet glycoprotein I 74.4 2.6 8.8E-05 30.9 3.4 44 140-185 24-67 (130)
170 2lz0_A Uncharacterized protein 36.1 30 0.001 23.7 3.1 34 196-229 18-52 (100)
No 1
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.93 E-value=1.9e-26 Score=205.88 Aligned_cols=39 Identities=26% Similarity=0.335 Sum_probs=35.6
Q ss_pred CCccCCCchhHHHHHhcCCchhhhhhhhcccccchhhhc
Q 040471 7 MDRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCI 45 (340)
Q Consensus 7 ~d~i~~LPd~il~~Ifs~L~~~d~~~~s~vskrW~~l~~ 45 (340)
...|++||||++.+||+||+.+|+.+++.|||+|+++..
T Consensus 6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~ 44 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHT
T ss_pred cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 456999999999999999999999999999999999853
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=2.9e-23 Score=199.08 Aligned_cols=276 Identities=16% Similarity=0.221 Sum_probs=158.6
Q ss_pred cCCccCCCchhHHHHHhcCCc-hhhhhhhhcccccchhhhc-ccceEEEeccccccc--------cccccCcc-------
Q 040471 6 GMDRITELPTFIIHHIMSYLS-AKEIARTSILSKRWCLFCI-SFPILEFDQCYFLGK--------AITLMDIS------- 68 (340)
Q Consensus 6 ~~d~i~~LPd~il~~Ifs~L~-~~d~~~~s~vskrW~~l~~-~~~~l~~~~~~~~~~--------~~~~~~~~------- 68 (340)
..|+|+.|||||+.+||+||+ .+|+.+++.|||||+++.. ....+.+........ .-..+++.
T Consensus 2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 81 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFAD 81 (594)
T ss_dssp --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGG
T ss_pred cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhh
Confidence 358999999999999999999 9999999999999998721 112222221100000 00000000
Q ss_pred ------hh-hHHHHHHHHHHHhhhccCcccceEEEEEeccCcCCChhhHHHHHHHHHHcCccEEEEEeecCCCCCccccC
Q 040471 69 ------DE-KKFMAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKDLVLMVHNMTQEDTVCIL 141 (340)
Q Consensus 69 ------~~-~~~~~~v~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~l 141 (340)
.+ ......+..+. ...+.++++.+.... .....+..... ..+++++|++..|... ....+
T Consensus 82 ~~l~~~~~~~~~~~~l~~l~----~~~~~L~~L~L~~~~----~~~~~~~~l~~--~~~~L~~L~L~~~~~~---~~~~l 148 (594)
T 2p1m_B 82 FNLVPDGWGGYVYPWIEAMS----SSYTWLEEIRLKRMV----VTDDCLELIAK--SFKNFKVLVLSSCEGF---STDGL 148 (594)
T ss_dssp GTCSCTTSCCBCHHHHHHHH----HHCTTCCEEEEESCB----CCHHHHHHHHH--HCTTCCEEEEESCEEE---EHHHH
T ss_pred cccccccccchhhHHHHHHH----HhCCCCCeEEeeCcE----EcHHHHHHHHH--hCCCCcEEeCCCcCCC---CHHHH
Confidence 00 00011122222 122578888876431 22212221111 2478999999776321 23345
Q ss_pred CccccCCCCccEEEeeceeCCCCCC----cccccCcccceEecceEe--eChHHHHHHHhcCCCCcEEEecccCCCccc-
Q 040471 142 PQTIFSAKSMATLSLFGCRMEQPSD----TTTIRLDSLKKLTLENVY--INDQMFQKLTNECPSLEDFEISACWGLKNL- 214 (340)
Q Consensus 142 ~~~~~~~~~L~~L~L~~~~~~~~~~----~~~~~~~~L~~L~L~~~~--~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~- 214 (340)
+.....|++|++|++++|.+..... .....+++|++|++.++. +++..+..+...||+|++|++++|..+..+
T Consensus 149 ~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~ 228 (594)
T 2p1m_B 149 AAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLA 228 (594)
T ss_dssp HHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHH
T ss_pred HHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHH
Confidence 5555678999999999987643221 122367899999999886 477888988888999999999998544332
Q ss_pred -ccccCCCCceEEeccccc--------------------------------ccceeeecCcCcceEeccCceeeccHHHH
Q 040471 215 -CVSKAHKLKKLAIYTFYK--------------------------------DIGIVEIVVPSLQQQLMLTSVWFMDEEFD 261 (340)
Q Consensus 215 -~~~~~~~L~~L~i~~~~~--------------------------------~~~~~~~~~p~L~~ll~l~~~~i~~~~~~ 261 (340)
.+..+++|+.|.+..+.. .+..+...+++|+.| .+.++.+++..+.
T Consensus 229 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L-~L~~~~l~~~~l~ 307 (594)
T 2p1m_B 229 TLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTL-NLSYATVQSYDLV 307 (594)
T ss_dssp HHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEE-ECTTCCCCHHHHH
T ss_pred HHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEE-EccCCCCCHHHHH
Confidence 123456666666543310 011111145677776 6777677777777
Q ss_pred HHHcCCCcccEEecccCCCCccccc-----ccccccEEEee
Q 040471 262 RFISKFPLLEDLLLRFCRLPEKVKI-----SSNQLKNLHFN 297 (340)
Q Consensus 262 ~l~~~~~~L~~L~l~~c~~i~~~~~-----~~~~L~~L~l~ 297 (340)
.++.++++|++|++++| +++.+. .+++|++|++.
T Consensus 308 ~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~ 346 (594)
T 2p1m_B 308 KLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVF 346 (594)
T ss_dssp HHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEe
Confidence 77778888888888776 332222 25677777773
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.90 E-value=3e-23 Score=199.00 Aligned_cols=196 Identities=13% Similarity=0.132 Sum_probs=107.8
Q ss_pred cccccCCccC----CCchhHHHHHhcCC-chhhhhhhhcccccchhhhcccceEEEecccccccc---------ccccCc
Q 040471 2 MYAKGMDRIT----ELPTFIIHHIMSYL-SAKEIARTSILSKRWCLFCISFPILEFDQCYFLGKA---------ITLMDI 67 (340)
Q Consensus 2 ~~~~~~d~i~----~LPd~il~~Ifs~L-~~~d~~~~s~vskrW~~l~~~~~~l~~~~~~~~~~~---------~~~~~~ 67 (340)
|+.++.|+++ .||||++.+||+|| +.+|+.+++.|||||++++...+...+....+.... -..+++
T Consensus 1 m~~~~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L 80 (592)
T 3ogk_B 1 MEDPDIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKL 80 (592)
T ss_dssp -----------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEEE
T ss_pred CCChhhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEEe
Confidence 5666667777 89999999999999 799999999999999987543332212111111000 000000
Q ss_pred c-------------hhhHH-HHHHHHHHHhhhccCcccceEEEEEeccCcCCChhhHHHHHHHHHHcCccEEEEEeecCC
Q 040471 68 S-------------DEKKF-MAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKDLVLMVHNMT 133 (340)
Q Consensus 68 ~-------------~~~~~-~~~v~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~l~~~~~~~l~~L~l~~~~~~ 133 (340)
. ....+ ...+..+. ..-+.++.+.+... .... ..-.++......++++|++..|...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~----~~~~~L~~L~L~~~----~i~~-~~~~~l~~~~~~~L~~L~L~~~~~~ 151 (592)
T 3ogk_B 81 KGKPRAAMFNLIPENWGGYVTPWVTEIS----NNLRQLKSVHFRRM----IVSD-LDLDRLAKARADDLETLKLDKCSGF 151 (592)
T ss_dssp ECSCGGGGGTCSCTTSCCBCHHHHHHHH----HHCTTCCEEEEESC----BCCH-HHHHHHHHHHGGGCCEEEEESCEEE
T ss_pred cCCcchhhcccccccccccchHHHHHHH----hhCCCCCeEEeecc----EecH-HHHHHHHHhccccCcEEECcCCCCc
Confidence 0 00000 00111111 11145666666522 1122 2233444433345888888665421
Q ss_pred CCCccccCCccccCCCCccEEEeeceeCCCCC----CcccccCcccceEecceEeeC---hHHHHHHHhcCCCCcEEEec
Q 040471 134 QEDTVCILPQTIFSAKSMATLSLFGCRMEQPS----DTTTIRLDSLKKLTLENVYIN---DQMFQKLTNECPSLEDFEIS 206 (340)
Q Consensus 134 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~----~~~~~~~~~L~~L~L~~~~~~---~~~l~~l~~~~p~L~~L~l~ 206 (340)
....++.....|++|++|+|++|.+.... ......+++|++|++.++.++ ...+..+...||+|++|+++
T Consensus 152 ---~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~ 228 (592)
T 3ogk_B 152 ---TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG 228 (592)
T ss_dssp ---EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECS
T ss_pred ---CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEecc
Confidence 23344444556888899998888764321 112346788888888877763 57788888889999999888
Q ss_pred ccC
Q 040471 207 ACW 209 (340)
Q Consensus 207 ~c~ 209 (340)
+|.
T Consensus 229 ~~~ 231 (592)
T 3ogk_B 229 DFE 231 (592)
T ss_dssp SCB
T ss_pred Ccc
Confidence 874
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.57 E-value=1.6e-14 Score=128.18 Aligned_cols=193 Identities=18% Similarity=0.192 Sum_probs=127.7
Q ss_pred HcCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471 119 DNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP 198 (340)
Q Consensus 119 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p 198 (340)
..+++.|++..+.. ..+|..++.+++|++|+++++.+. ..+.....+++|++|+++++.++ .+...+..++
T Consensus 80 ~~~l~~L~L~~n~l------~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~ 150 (328)
T 4fcg_A 80 QPGRVALELRSVPL------PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR--ALPASIASLN 150 (328)
T ss_dssp STTCCEEEEESSCC------SSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCT
T ss_pred ccceeEEEccCCCc------hhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc--cCcHHHhcCc
Confidence 36788888876554 477777777888888888888766 34344567888888888888764 2222356788
Q ss_pred CCcEEEecccCCCcccc-----------cccCCCCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcC
Q 040471 199 SLEDFEISACWGLKNLC-----------VSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISK 266 (340)
Q Consensus 199 ~L~~L~l~~c~~~~~~~-----------~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~ 266 (340)
+|++|++++|.....+. +..+++|+.|+++++. ..+......+++|+.| .+.++.+++ +...+.+
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L-~L~~N~l~~--l~~~l~~ 227 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL-KIRNSPLSA--LGPAIHH 227 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEE-EEESSCCCC--CCGGGGG
T ss_pred CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEE-EccCCCCCc--Cchhhcc
Confidence 88888888876544331 2237888888888776 2111112256677777 666665553 1122567
Q ss_pred CCcccEEecccCCCCcccccc---cccccEEEeecCcchhhhc---cCCCCeeEEEEeccCCC
Q 040471 267 FPLLEDLLLRFCRLPEKVKIS---SNQLKNLHFNSCENLKAID---TDTPNLLSFTFSYDFNP 323 (340)
Q Consensus 267 ~~~L~~L~l~~c~~i~~~~~~---~~~L~~L~l~~c~~l~~~~---~~~p~L~~L~~~~~~~~ 323 (340)
+++|++|++++|...+.++.. +++|++|++++|.....+. ...++|+.|++.++...
T Consensus 228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence 788888888887776655443 5788888888877653332 34688888888885443
No 5
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.54 E-value=6.4e-16 Score=137.46 Aligned_cols=201 Identities=16% Similarity=0.203 Sum_probs=139.9
Q ss_pred HHHHHHHHcCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCC-CCcccccCcccceEecceEeeChHHH
Q 040471 112 KWIGLAVDNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQP-SDTTTIRLDSLKKLTLENVYINDQMF 190 (340)
Q Consensus 112 ~~l~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l 190 (340)
..+.....++++.+++..+.. ...+..++.+++|++|++++|.+... .......+++|++|++.++.+++...
T Consensus 62 ~~~~~~~~~~l~~L~l~~n~l------~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~ 135 (336)
T 2ast_B 62 DVTGRLLSQGVIAFRCPRSFM------DQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV 135 (336)
T ss_dssp HHHHHHHHTTCSEEECTTCEE------CSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHH
T ss_pred HHHHhhhhccceEEEcCCccc------cccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHH
Confidence 344555557888888754432 22333456788899999988876542 22345678899999999888776666
Q ss_pred HHHHhcCCCCcEEEecccCCCccc----ccccCCCCceEEeccc-ccc---cceeeecCc-CcceEeccCce--eeccHH
Q 040471 191 QKLTNECPSLEDFEISACWGLKNL----CVSKAHKLKKLAIYTF-YKD---IGIVEIVVP-SLQQQLMLTSV--WFMDEE 259 (340)
Q Consensus 191 ~~l~~~~p~L~~L~l~~c~~~~~~----~~~~~~~L~~L~i~~~-~~~---~~~~~~~~p-~L~~ll~l~~~--~i~~~~ 259 (340)
..+ ..+++|++|++++|..+... .+..+++|++|++++| .-. .......+| +|+.| .+.++ .+++..
T Consensus 136 ~~l-~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L-~l~~~~~~~~~~~ 213 (336)
T 2ast_B 136 NTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL-NLSGYRKNLQKSD 213 (336)
T ss_dssp HHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE-ECCSCGGGSCHHH
T ss_pred HHH-hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE-EeCCCcccCCHHH
Confidence 654 45899999999988666542 2345788999999888 411 222334677 88888 77777 577777
Q ss_pred HHHHHcCCCcccEEecccCCCCccccc----ccccccEEEeecCcchhh----hccCCCCeeEEEEecc
Q 040471 260 FDRFISKFPLLEDLLLRFCRLPEKVKI----SSNQLKNLHFNSCENLKA----IDTDTPNLLSFTFSYD 320 (340)
Q Consensus 260 ~~~l~~~~~~L~~L~l~~c~~i~~~~~----~~~~L~~L~l~~c~~l~~----~~~~~p~L~~L~~~~~ 320 (340)
+...+.++++|++|++++|..+++... .+++|++|++++|..+.. ....+|+|+.|++.|.
T Consensus 214 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 214 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 777788889999999998876554333 258899999988865421 1245788999998886
No 6
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.38 E-value=1.6e-13 Score=131.27 Aligned_cols=67 Identities=16% Similarity=0.120 Sum_probs=31.3
Q ss_pred eccHHHHHHHcCCCcccEEecccCCCCcccc-----cccccccEEEeecCcc----hhhhccCCCCeeEEEEeccCC
Q 040471 255 FMDEEFDRFISKFPLLEDLLLRFCRLPEKVK-----ISSNQLKNLHFNSCEN----LKAIDTDTPNLLSFTFSYDFN 322 (340)
Q Consensus 255 i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~-----~~~~~L~~L~l~~c~~----l~~~~~~~p~L~~L~~~~~~~ 322 (340)
+++..+..+...+++|++|++++|. +++.+ ..+++|++|++++|.- +..+...+|+|+.|+++++..
T Consensus 450 l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~i 525 (592)
T 3ogk_B 450 LTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525 (592)
T ss_dssp CCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBC
T ss_pred ccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcC
Confidence 4444455444555555555555443 32211 2245555555555541 112223345555555555443
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.37 E-value=9.5e-13 Score=116.65 Aligned_cols=216 Identities=16% Similarity=0.171 Sum_probs=149.9
Q ss_pred CcccceEEEEEeccCcCCChhhHHHHHHHHHHcCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCc
Q 040471 88 RFRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDT 167 (340)
Q Consensus 88 ~~~l~~l~l~~~~~~~~~~~~~l~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~ 167 (340)
...++.+.+...... .+...+. ...+++.|++..+.. ..+|..+..+++|++|++++|.+. ..+.
T Consensus 80 ~~~l~~L~L~~n~l~------~lp~~l~--~l~~L~~L~L~~n~l------~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~ 144 (328)
T 4fcg_A 80 QPGRVALELRSVPLP------QFPDQAF--RLSHLQHMTIDAAGL------MELPDTMQQFAGLETLTLARNPLR-ALPA 144 (328)
T ss_dssp STTCCEEEEESSCCS------SCCSCGG--GGTTCSEEEEESSCC------CCCCSCGGGGTTCSEEEEESCCCC-CCCG
T ss_pred ccceeEEEccCCCch------hcChhhh--hCCCCCEEECCCCCc------cchhHHHhccCCCCEEECCCCccc-cCcH
Confidence 357888888744321 1111111 136899999987765 378888889999999999999887 3445
Q ss_pred ccccCcccceEecceEeeChHHHHHH--------HhcCCCCcEEEecccCCCccc--ccccCCCCceEEecccc-cccce
Q 040471 168 TTIRLDSLKKLTLENVYINDQMFQKL--------TNECPSLEDFEISACWGLKNL--CVSKAHKLKKLAIYTFY-KDIGI 236 (340)
Q Consensus 168 ~~~~~~~L~~L~L~~~~~~~~~l~~l--------~~~~p~L~~L~l~~c~~~~~~--~~~~~~~L~~L~i~~~~-~~~~~ 236 (340)
....+++|++|++++|.........+ +..+++|++|++++|.- ..+ .+..+++|++|+++++. .....
T Consensus 145 ~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~N~l~~l~~ 223 (328)
T 4fcg_A 145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLSALGP 223 (328)
T ss_dssp GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-CCCCGGGGGCTTCCEEEEESSCCCCCCG
T ss_pred HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-CcchHhhcCCCCCCEEEccCCCCCcCch
Confidence 67789999999999986521111111 23589999999999843 232 35678999999999887 22222
Q ss_pred eeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCcccccc---cccccEEEeecCcchhhhc---cCCC
Q 040471 237 VEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKIS---SNQLKNLHFNSCENLKAID---TDTP 310 (340)
Q Consensus 237 ~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~---~~~L~~L~l~~c~~l~~~~---~~~p 310 (340)
....+++|+.| .+.++.+.+.. ...+.++++|++|++++|...+.++.. +++|++|++++|..+..+. ...+
T Consensus 224 ~l~~l~~L~~L-~Ls~n~~~~~~-p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~ 301 (328)
T 4fcg_A 224 AIHHLPKLEEL-DLRGCTALRNY-PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301 (328)
T ss_dssp GGGGCTTCCEE-ECTTCTTCCBC-CCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSC
T ss_pred hhccCCCCCEE-ECcCCcchhhh-HHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhcc
Confidence 22357888888 77765544321 223567899999999999887766643 6899999999998764443 3457
Q ss_pred CeeEEEEeccC
Q 040471 311 NLLSFTFSYDF 321 (340)
Q Consensus 311 ~L~~L~~~~~~ 321 (340)
+|+.+.+....
T Consensus 302 ~L~~l~l~~~~ 312 (328)
T 4fcg_A 302 ANCIILVPPHL 312 (328)
T ss_dssp TTCEEECCGGG
T ss_pred CceEEeCCHHH
Confidence 88888776543
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.35 E-value=1.2e-11 Score=110.33 Aligned_cols=169 Identities=12% Similarity=0.052 Sum_probs=88.1
Q ss_pred ccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEee-ChHHHHHHHhcCCCCcEEEecccCCCcccccccCCCCc
Q 040471 145 IFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYI-NDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLK 223 (340)
Q Consensus 145 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~~L~ 223 (340)
+..+++|++|++++|.+... +....+++|+.|++.++.. ..- .. ...+++|++|++++|.......+..+++|+
T Consensus 106 ~~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~~~~~~--~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~ 180 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDNISDI--SPLANLTKMYSLNLGANHNLSDL--SP-LSNMTGLNYLTVTESKVKDVTPIANLTDLY 180 (347)
T ss_dssp GTTCTTCSEEECTTSCCCCC--GGGTTCTTCCEEECTTCTTCCCC--GG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred HcCCCcCCEEECcCCcccCc--hhhccCCceeEEECCCCCCcccc--cc-hhhCCCCcEEEecCCCcCCchhhccCCCCC
Confidence 44455555555555544321 1133455555555555432 110 00 344555555555555332222244456666
Q ss_pred eEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCcccc--cccccccEEEeecCc
Q 040471 224 KLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVK--ISSNQLKNLHFNSCE 300 (340)
Q Consensus 224 ~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~--~~~~~L~~L~l~~c~ 300 (340)
.|+++++. ..... ...+++|+.+ .+.++.+++... +..+++|++|++++|.. ++.+ ..+++|++|++++|.
T Consensus 181 ~L~l~~n~l~~~~~-~~~l~~L~~L-~l~~n~l~~~~~---~~~~~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~~n~ 254 (347)
T 4fmz_A 181 SLSLNYNQIEDISP-LASLTSLHYF-TAYVNQITDITP---VANMTRLNSLKIGNNKI-TDLSPLANLSQLTWLEIGTNQ 254 (347)
T ss_dssp EEECTTSCCCCCGG-GGGCTTCCEE-ECCSSCCCCCGG---GGGCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSSC
T ss_pred EEEccCCccccccc-ccCCCcccee-ecccCCCCCCch---hhcCCcCCEEEccCCcc-CCCcchhcCCCCCEEECCCCc
Confidence 66666554 11111 2244555555 555555443322 56778888888887653 3332 236788888888774
Q ss_pred chh-hhccCCCCeeEEEEeccCCCC
Q 040471 301 NLK-AIDTDTPNLLSFTFSYDFNPI 324 (340)
Q Consensus 301 ~l~-~~~~~~p~L~~L~~~~~~~~~ 324 (340)
--. ......++|+.|++.++....
T Consensus 255 l~~~~~~~~l~~L~~L~l~~n~l~~ 279 (347)
T 4fmz_A 255 ISDINAVKDLTKLKMLNVGSNQISD 279 (347)
T ss_dssp CCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred cCCChhHhcCCCcCEEEccCCccCC
Confidence 321 122456888888888876554
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.33 E-value=3.2e-12 Score=126.07 Aligned_cols=195 Identities=16% Similarity=0.121 Sum_probs=131.2
Q ss_pred cCccEEEEEeecCCCCCccccCCc--cccCCCCccEEEeeceeCCCCCCccc-ccCcccceEecceEeeChHHHH--HHH
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQ--TIFSAKSMATLSLFGCRMEQPSDTTT-IRLDSLKKLTLENVYINDQMFQ--KLT 194 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~~~~~l~--~l~ 194 (340)
.++++|+++.+.. ...+|. .+..+++|++|++++|.+........ ..+++|++|+++++.++..... ...
T Consensus 100 ~~L~~L~Ls~n~l-----~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 174 (768)
T 3rgz_A 100 ASLTSLDLSRNSL-----SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS 174 (768)
T ss_dssp TTCCEEECCSSEE-----EEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHT
T ss_pred CCCCEEECCCCcC-----CCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhh
Confidence 5788888866543 234555 77889999999999987654332222 6789999999999988432222 236
Q ss_pred hcCCCCcEEEecccCCCcccccccCCCCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEE
Q 040471 195 NECPSLEDFEISACWGLKNLCVSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDL 273 (340)
Q Consensus 195 ~~~p~L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L 273 (340)
..+++|++|++++|.-........+++|++|+++++. .........+++|+.| .+.++.+++... ..+.++++|++|
T Consensus 175 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L-~Ls~n~l~~~~~-~~l~~l~~L~~L 252 (768)
T 3rgz_A 175 DGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHL-DISGNKLSGDFS-RAISTCTELKLL 252 (768)
T ss_dssp TCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEE-ECCSSCCCSCHH-HHTTTCSSCCEE
T ss_pred ccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEE-ECcCCcCCCccc-HHHhcCCCCCEE
Confidence 7899999999999865444445678999999999887 2222223357888888 788777765433 346789999999
Q ss_pred ecccCCCCccccc-ccccccEEEeecCcch----hhhccCCCCeeEEEEeccC
Q 040471 274 LLRFCRLPEKVKI-SSNQLKNLHFNSCENL----KAIDTDTPNLLSFTFSYDF 321 (340)
Q Consensus 274 ~l~~c~~i~~~~~-~~~~L~~L~l~~c~~l----~~~~~~~p~L~~L~~~~~~ 321 (340)
++++|...+..+. .+++|++|++.+|.-. ..+...+++|+.|++.++.
T Consensus 253 ~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~ 305 (768)
T 3rgz_A 253 NISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH 305 (768)
T ss_dssp ECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE
T ss_pred ECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc
Confidence 9998865332222 3567777777766432 1111223666666666543
No 10
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.31 E-value=2.2e-11 Score=108.53 Aligned_cols=200 Identities=14% Similarity=0.062 Sum_probs=106.6
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEee-ChHHHHHHHhcCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYI-NDQMFQKLTNECP 198 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p 198 (340)
+++++|++..+.. ..++. +..+++|+.|++++|..... .+....+++|++|++.++.+ .... ...++
T Consensus 110 ~~L~~L~l~~n~i------~~~~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~----~~~l~ 177 (347)
T 4fmz_A 110 TNLRELYLNEDNI------SDISP-LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP----IANLT 177 (347)
T ss_dssp TTCSEEECTTSCC------CCCGG-GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG----GGGCT
T ss_pred CcCCEEECcCCcc------cCchh-hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh----hccCC
Confidence 5677777755443 22332 44556666666666532211 12234455555555555544 1111 33455
Q ss_pred CCcEEEecccC----------------------CCcccccccCCCCceEEecccc-cccceeeecCcCcceEeccCceee
Q 040471 199 SLEDFEISACW----------------------GLKNLCVSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWF 255 (340)
Q Consensus 199 ~L~~L~l~~c~----------------------~~~~~~~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i 255 (340)
+|++|++++|. ......+..+++|+.|+++++. ..... ...+++|+.+ .+.++.+
T Consensus 178 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L-~l~~n~l 255 (347)
T 4fmz_A 178 DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWL-EIGTNQI 255 (347)
T ss_dssp TCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEE-ECCSSCC
T ss_pred CCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEE-ECCCCcc
Confidence 55555555442 2111123445667777776665 11111 2245667766 6666665
Q ss_pred ccHHHHHHHcCCCcccEEecccCCCCcccc--cccccccEEEeecCcch---hhhccCCCCeeEEEEeccCCCCcceecc
Q 040471 256 MDEEFDRFISKFPLLEDLLLRFCRLPEKVK--ISSNQLKNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNPIPTIAMN 330 (340)
Q Consensus 256 ~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~--~~~~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~~~~~~~~ 330 (340)
++- ..+..+++|++|++++|. +++++ ..+++|++|++++|.-. .......|+|+.|++.++..........
T Consensus 256 ~~~---~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 331 (347)
T 4fmz_A 256 SDI---NAVKDLTKLKMLNVGSNQ-ISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLAS 331 (347)
T ss_dssp CCC---GGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGG
T ss_pred CCC---hhHhcCCCcCEEEccCCc-cCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhh
Confidence 542 235677888888888764 44332 23578888888887542 1222456889999988877654212223
Q ss_pred ccccccc
Q 040471 331 ALSMETL 337 (340)
Q Consensus 331 ~~~~~~l 337 (340)
.++++.|
T Consensus 332 l~~L~~L 338 (347)
T 4fmz_A 332 LSKMDSA 338 (347)
T ss_dssp CTTCSEE
T ss_pred hhcccee
Confidence 3445444
No 11
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.30 E-value=7e-12 Score=110.30 Aligned_cols=197 Identities=11% Similarity=-0.005 Sum_probs=129.0
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS 199 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 199 (340)
++++.|++..+.. ....+|..+..+++|++|+++++.+....+.....+++|++|+++++.++.. +...+..+++
T Consensus 76 ~~L~~L~L~~~n~----l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~ 150 (313)
T 1ogq_A 76 PYLNFLYIGGINN----LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPN 150 (313)
T ss_dssp TTCSEEEEEEETT----EESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTT
T ss_pred CCCCeeeCCCCCc----ccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCC
Confidence 6889999875333 2346787888889999999999877543444567789999999998887321 1122467899
Q ss_pred CcEEEecccCCCccc--ccccCC-CCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEec
Q 040471 200 LEDFEISACWGLKNL--CVSKAH-KLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLL 275 (340)
Q Consensus 200 L~~L~l~~c~~~~~~--~~~~~~-~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l 275 (340)
|++|+++++.--..+ .+..++ +|+.|+++++. .+...-.+...+|+.+ .+.++.+++.. ...+..+++|++|++
T Consensus 151 L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L-~Ls~N~l~~~~-~~~~~~l~~L~~L~L 228 (313)
T 1ogq_A 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFV-DLSRNMLEGDA-SVLFGSDKNTQKIHL 228 (313)
T ss_dssp CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEE-ECCSSEEEECC-GGGCCTTSCCSEEEC
T ss_pred CCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEE-ECcCCcccCcC-CHHHhcCCCCCEEEC
Confidence 999999987542121 344555 89999998876 1111111222237776 77777665432 234567899999999
Q ss_pred ccCCCCcccc--cccccccEEEeecCcch---hhhccCCCCeeEEEEeccCCC
Q 040471 276 RFCRLPEKVK--ISSNQLKNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNP 323 (340)
Q Consensus 276 ~~c~~i~~~~--~~~~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~ 323 (340)
++|..-...+ ..+++|++|+++++.-. .......++|+.|++.++...
T Consensus 229 ~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 229 AKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp CSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred CCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence 8776432222 23578999999887643 122245688999998886554
No 12
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.29 E-value=2.4e-11 Score=106.60 Aligned_cols=186 Identities=13% Similarity=0.098 Sum_probs=112.7
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS 199 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 199 (340)
.++++|++..+.. ..++ .+..+++|+.|++++|.+... +....+++|++|+++++.++.- . -+..+++
T Consensus 41 ~~L~~L~l~~~~i------~~l~-~~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~ 108 (308)
T 1h6u_A 41 DGITTLSAFGTGV------TTIE-GVQYLNNLIGLELKDNQITDL--APLKNLTKITELELSGNPLKNV--S-AIAGLQS 108 (308)
T ss_dssp HTCCEEECTTSCC------CCCT-TGGGCTTCCEEECCSSCCCCC--GGGTTCCSCCEEECCSCCCSCC--G-GGTTCTT
T ss_pred CCcCEEEeeCCCc------cCch-hhhccCCCCEEEccCCcCCCC--hhHccCCCCCEEEccCCcCCCc--h-hhcCCCC
Confidence 5777777755443 2344 355677788888887766542 1256677788888887776321 1 2456778
Q ss_pred CcEEEecccCCCcccccccCCCCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccC
Q 040471 200 LEDFEISACWGLKNLCVSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFC 278 (340)
Q Consensus 200 L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c 278 (340)
|++|++++|.--..-.+..+++|+.|+++++. ..... ...+++|+.| .+.++.+++-.. +..+++|++|++++|
T Consensus 109 L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L-~l~~n~l~~~~~---l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 109 IKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYL-SIGNAQVSDLTP---LANLSKLTTLKADDN 183 (308)
T ss_dssp CCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEE-ECCSSCCCCCGG---GTTCTTCCEEECCSS
T ss_pred CCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEE-EccCCcCCCChh---hcCCCCCCEEECCCC
Confidence 88888877743222235566778888877765 22221 2245667776 666666554222 567788888888766
Q ss_pred CCCcccc--cccccccEEEeecCcch--hhhccCCCCeeEEEEeccCCCC
Q 040471 279 RLPEKVK--ISSNQLKNLHFNSCENL--KAIDTDTPNLLSFTFSYDFNPI 324 (340)
Q Consensus 279 ~~i~~~~--~~~~~L~~L~l~~c~~l--~~~~~~~p~L~~L~~~~~~~~~ 324 (340)
. +++++ ..+++|++|++++|.-- .. ....|+|+.|++.++....
T Consensus 184 ~-l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 184 K-ISDISPLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp C-CCCCGGGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEEC
T ss_pred c-cCcChhhcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeec
Confidence 5 33332 23577888888776432 22 2345778888777765443
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.29 E-value=2.3e-12 Score=123.66 Aligned_cols=83 Identities=16% Similarity=0.260 Sum_probs=36.8
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS 199 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 199 (340)
+++++|++..+.. ..+|..+..+++|++|++++|.+..........+++|++|++.++..........+..+++
T Consensus 278 ~~L~~L~l~~n~l------~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 278 SGLQELDLTATHL------SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTCSEEECTTSCC------SCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred cCCCEEeccCCcc------CCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 3455555543332 2455555555566666666555433212233345555555555543311111111234455
Q ss_pred CcEEEeccc
Q 040471 200 LEDFEISAC 208 (340)
Q Consensus 200 L~~L~l~~c 208 (340)
|++|++++|
T Consensus 352 L~~L~l~~n 360 (606)
T 3t6q_A 352 LRELDLSHD 360 (606)
T ss_dssp CCEEECCSS
T ss_pred CCEEECCCC
Confidence 555555544
No 14
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.25 E-value=1.5e-11 Score=108.08 Aligned_cols=176 Identities=17% Similarity=0.120 Sum_probs=106.7
Q ss_pred CCCCccEEEeeceeCCCCCCccc--ccCcccceEecceEeeCh--HHHHHHHh-cCCCCcEEEecccCCCcc--cccccC
Q 040471 147 SAKSMATLSLFGCRMEQPSDTTT--IRLDSLKKLTLENVYIND--QMFQKLTN-ECPSLEDFEISACWGLKN--LCVSKA 219 (340)
Q Consensus 147 ~~~~L~~L~L~~~~~~~~~~~~~--~~~~~L~~L~L~~~~~~~--~~l~~l~~-~~p~L~~L~l~~c~~~~~--~~~~~~ 219 (340)
.+++|++|+++++.+....+... ..+++|++|+++++.++. ..+..+.. ..++|++|+++++.-... -.+..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 56778888888877653332332 567788888888777732 22222221 137888888887743221 234566
Q ss_pred CCCceEEecccc-ccc----ceee-ecCcCcceEeccCceeecc--HHHHHHHcCCCcccEEecccCCCCccccc----c
Q 040471 220 HKLKKLAIYTFY-KDI----GIVE-IVVPSLQQQLMLTSVWFMD--EEFDRFISKFPLLEDLLLRFCRLPEKVKI----S 287 (340)
Q Consensus 220 ~~L~~L~i~~~~-~~~----~~~~-~~~p~L~~ll~l~~~~i~~--~~~~~l~~~~~~L~~L~l~~c~~i~~~~~----~ 287 (340)
++|+.|+++++. .+. ..+. ...++|+.| .+.++.++. .....++.++++|++|++++|..-+..+. .
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVL-ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEE-ECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEE-ECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 788888888775 111 1111 346777777 777777764 33445667788888888887664332211 2
Q ss_pred cccccEEEeecCcchhhhccCC-CCeeEEEEeccCCCC
Q 040471 288 SNQLKNLHFNSCENLKAIDTDT-PNLLSFTFSYDFNPI 324 (340)
Q Consensus 288 ~~~L~~L~l~~c~~l~~~~~~~-p~L~~L~~~~~~~~~ 324 (340)
.++|++|+++++.- ..+.... ++|+.|+++++....
T Consensus 252 l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l~~ 288 (312)
T 1wwl_A 252 PSQLNSLNLSFTGL-KQVPKGLPAKLSVLDLSYNRLDR 288 (312)
T ss_dssp CTTCCEEECTTSCC-SSCCSSCCSEEEEEECCSSCCCS
T ss_pred cCCCCEEECCCCcc-ChhhhhccCCceEEECCCCCCCC
Confidence 47888888887753 2333222 688888888876654
No 15
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.25 E-value=7.8e-12 Score=109.84 Aligned_cols=221 Identities=17% Similarity=0.119 Sum_probs=117.0
Q ss_pred ccceEEEEEeccCcCCChhhHHHHHHHHHHcCccEEEEEeecCCCCCccccCCccc--cCCCCccEEEeeceeCCCCCC-
Q 040471 90 RMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKDLVLMVHNMTQEDTVCILPQTI--FSAKSMATLSLFGCRMEQPSD- 166 (340)
Q Consensus 90 ~l~~l~l~~~~~~~~~~~~~l~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~~~~~~~- 166 (340)
.++++.+... ......+..........++++|++..+.. ....|..+ ..+++|+.|+++++.+.....
T Consensus 65 ~l~~l~l~~~----~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-----~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~ 135 (310)
T 4glp_A 65 RVRRLTVGAA----QVPAQLLVGALRVLAYSRLKELTLEDLKI-----TGTMPPLPLEATGLALSSLRLRNVSWATGRSW 135 (310)
T ss_dssp CCCEEEECSC----CCBHHHHHHHHHHHHHSCCCEEEEESCCC-----BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS
T ss_pred ceeEEEEeCC----cCCHHHHHHHHHhcccCceeEEEeeCCEe-----ccchhhhhhhccCCCCCEEEeecccccchhhh
Confidence 4555555422 22333455555555567799999877654 23444444 567888888888887654221
Q ss_pred ---cccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcc------cccccCCCCceEEecccc-cccce
Q 040471 167 ---TTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKN------LCVSKAHKLKKLAIYTFY-KDIGI 236 (340)
Q Consensus 167 ---~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~------~~~~~~~~L~~L~i~~~~-~~~~~ 236 (340)
.....+++|++|+++++.+.... ...+..+++|++|+++++..... ..+..+++|++|+++++. .....
T Consensus 136 ~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~ 214 (310)
T 4glp_A 136 LAELQQWLKPGLKVLSIAQAHSPAFS-CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG 214 (310)
T ss_dssp HHHHHTTBCSCCCEEEEECCSSCCCC-TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH
T ss_pred hHHHHhhhccCCCEEEeeCCCcchhh-HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH
Confidence 11235788888888887762211 12235678888888888754321 122456778888887775 11111
Q ss_pred e----eecCcCcceEeccCceeeccHHHHHH--HcCCCcccEEecccCCCCcccccc-cccccEEEeecCcchh-hhccC
Q 040471 237 V----EIVVPSLQQQLMLTSVWFMDEEFDRF--ISKFPLLEDLLLRFCRLPEKVKIS-SNQLKNLHFNSCENLK-AIDTD 308 (340)
Q Consensus 237 ~----~~~~p~L~~ll~l~~~~i~~~~~~~l--~~~~~~L~~L~l~~c~~i~~~~~~-~~~L~~L~l~~c~~l~-~~~~~ 308 (340)
. ....++|+.| +++++.+++.....+ +..+++|++|++++|. ++.++.. +++|++|+++++.--. .....
T Consensus 215 ~~~~l~~~l~~L~~L-~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~L~~L~Ls~N~l~~~~~~~~ 292 (310)
T 4glp_A 215 VCAALAAAGVQPHSL-DLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGLPAKLRVLDLSSNRLNRAPQPDE 292 (310)
T ss_dssp HHHHHHHHTCCCSSE-ECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCCCSCCSCEECCSCCCCSCCCTTS
T ss_pred HHHHHHhcCCCCCEE-ECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhhhcCCCCEEECCCCcCCCCchhhh
Confidence 1 1134555555 555544433211100 1112566666666543 3333222 2566666665553211 12233
Q ss_pred CCCeeEEEEeccCC
Q 040471 309 TPNLLSFTFSYDFN 322 (340)
Q Consensus 309 ~p~L~~L~~~~~~~ 322 (340)
.|+|+.|+++++..
T Consensus 293 l~~L~~L~L~~N~l 306 (310)
T 4glp_A 293 LPEVDNLTLDGNPF 306 (310)
T ss_dssp CCCCSCEECSSTTT
T ss_pred CCCccEEECcCCCC
Confidence 45666666665444
No 16
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.24 E-value=1.6e-11 Score=113.65 Aligned_cols=195 Identities=16% Similarity=0.106 Sum_probs=128.1
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS 199 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 199 (340)
.+++.|++..+.. ....+..+..+++|++|+|+++.+..........+++|++|+|+++.++.- ....+..+++
T Consensus 99 ~~L~~L~Ls~n~i-----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~ 172 (452)
T 3zyi_A 99 HHLEVLQLGRNSI-----RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI-PSYAFNRVPS 172 (452)
T ss_dssp TTCCEEECCSSCC-----CEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEE-CTTTTTTCTT
T ss_pred CCCCEEECCCCcc-----CCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCccee-CHhHHhcCCc
Confidence 5788888866544 122234556688889999988876543223355688899999988876311 1123567889
Q ss_pred CcEEEecccCCCccc---ccccCCCCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEec
Q 040471 200 LEDFEISACWGLKNL---CVSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLL 275 (340)
Q Consensus 200 L~~L~l~~c~~~~~~---~~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l 275 (340)
|++|++++|..+..+ .+..+++|+.|+++++. .... ....+++|+.| ++.++.+++... ..+.++++|++|++
T Consensus 173 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L-~Ls~N~l~~~~~-~~~~~l~~L~~L~L 249 (452)
T 3zyi_A 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEEL-EMSGNHFPEIRP-GSFHGLSSLKKLWV 249 (452)
T ss_dssp CCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEE-ECTTSCCSEECG-GGGTTCTTCCEEEC
T ss_pred ccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEE-ECcCCcCcccCc-ccccCccCCCEEEe
Confidence 999999888776655 24567889999998886 2221 12246677777 777766654322 23567899999999
Q ss_pred ccCCCCccccc----ccccccEEEeecCcch---hhhccCCCCeeEEEEeccCCCC
Q 040471 276 RFCRLPEKVKI----SSNQLKNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNPI 324 (340)
Q Consensus 276 ~~c~~i~~~~~----~~~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~~ 324 (340)
++|.. +.+.. .+++|+.|+++++.-- .......++|+.|++.++...+
T Consensus 250 ~~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 250 MNSQV-SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp TTSCC-CEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred CCCcC-ceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 97663 33322 2588999999887432 2222446889999998876443
No 17
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.23 E-value=7.3e-11 Score=109.60 Aligned_cols=186 Identities=15% Similarity=0.161 Sum_probs=111.7
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS 199 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 199 (340)
.++++|++..+.. ..++. +..+++|++|++++|.+... +....+++|++|+++++.+..- .. ...+++
T Consensus 90 ~~L~~L~l~~n~l------~~~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~ 157 (466)
T 1o6v_A 90 TKLVDILMNNNQI------ADITP-LANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--SA-LSGLTS 157 (466)
T ss_dssp TTCCEEECCSSCC------CCCGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEEEEEEEECCC--GG-GTTCTT
T ss_pred ccCCEEECCCCcc------ccChh-hcCCCCCCEEECCCCCCCCC--hHHcCCCCCCEEECCCCccCCC--hh-hccCCc
Confidence 4666666654433 23333 55667777777777665442 2245667777777777766321 11 456777
Q ss_pred CcEEEecccCCCcccccccCCCCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccC
Q 040471 200 LEDFEISACWGLKNLCVSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFC 278 (340)
Q Consensus 200 L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c 278 (340)
|++|.+.++. .....+..+++|+.|+++++. .... ....+++|+.+ .+.++.+++... +..+++|++|++++|
T Consensus 158 L~~L~l~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L-~l~~n~l~~~~~---~~~l~~L~~L~l~~n 231 (466)
T 1o6v_A 158 LQQLSFGNQV-TDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESL-IATNNQISDITP---LGILTNLDELSLNGN 231 (466)
T ss_dssp CSEEEEEESC-CCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEE-ECCSSCCCCCGG---GGGCTTCCEEECCSS
T ss_pred ccEeecCCcc-cCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEE-EecCCccccccc---ccccCCCCEEECCCC
Confidence 7777775321 111235567888888888776 2221 12356777777 666666554322 456888888888876
Q ss_pred CCCcccc--cccccccEEEeecCcchhh-hccCCCCeeEEEEeccCCCC
Q 040471 279 RLPEKVK--ISSNQLKNLHFNSCENLKA-IDTDTPNLLSFTFSYDFNPI 324 (340)
Q Consensus 279 ~~i~~~~--~~~~~L~~L~l~~c~~l~~-~~~~~p~L~~L~~~~~~~~~ 324 (340)
. +++++ ..+++|++|++++|.--.. -....++|+.|++.++....
T Consensus 232 ~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~ 279 (466)
T 1o6v_A 232 Q-LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN 279 (466)
T ss_dssp C-CCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC
T ss_pred C-cccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCc
Confidence 5 33332 2367899999888754211 13456889999998876654
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.23 E-value=6.4e-11 Score=109.52 Aligned_cols=67 Identities=13% Similarity=0.140 Sum_probs=29.8
Q ss_pred CccccCCCCccEEEeeceeCCCCCCc--ccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEeccc
Q 040471 142 PQTIFSAKSMATLSLFGCRMEQPSDT--TTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISAC 208 (340)
Q Consensus 142 ~~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c 208 (340)
|..+..+++|++|++++|.+...... ....+++|++|+++++.++......++..+++|++|+++++
T Consensus 96 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 96 TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred hhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC
Confidence 33344455555555555544321111 13345555555555555422111222344555555555554
No 19
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.23 E-value=5.6e-12 Score=120.57 Aligned_cols=77 Identities=16% Similarity=0.196 Sum_probs=42.4
Q ss_pred CcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCccccc-----ccccccEEEeecCcch----hhhccCCCC
Q 040471 241 VPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKI-----SSNQLKNLHFNSCENL----KAIDTDTPN 311 (340)
Q Consensus 241 ~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~-----~~~~L~~L~l~~c~~l----~~~~~~~p~ 311 (340)
+++|+.| .+.++.+++..+..+..++++|++|++++|.. ++.+. .+++|++|++++|... +.+....|+
T Consensus 455 ~~~L~~L-~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~ 532 (594)
T 2p1m_B 455 AKKMEML-SVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPK 532 (594)
T ss_dssp CTTCCEE-EEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTT
T ss_pred chhccEe-eccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCC
Confidence 5556655 55555566666665556666666666666654 33222 2566666666666542 223334466
Q ss_pred eeEEEEec
Q 040471 312 LLSFTFSY 319 (340)
Q Consensus 312 L~~L~~~~ 319 (340)
|+...+.+
T Consensus 533 l~i~~~~~ 540 (594)
T 2p1m_B 533 LNVEVIDE 540 (594)
T ss_dssp EEEEEECS
T ss_pred CEEEEecC
Confidence 65444443
No 20
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.22 E-value=2.5e-11 Score=106.95 Aligned_cols=163 Identities=18% Similarity=0.155 Sum_probs=79.9
Q ss_pred cCccEEEEEeecCCCCCccccCC-ccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILP-QTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP 198 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p 198 (340)
+++++|++..+.. ..++ ..+..+++|++|++++|.+... .....+++|++|+++++.++. ...++
T Consensus 34 ~~L~~L~L~~n~l------~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~l~~L~~L~Ls~n~l~~------l~~~~ 99 (317)
T 3o53_A 34 WNVKELDLSGNPL------SQISAADLAPFTKLELLNLSSNVLYET--LDLESLSTLRTLDLNNNYVQE------LLVGP 99 (317)
T ss_dssp GGCSEEECTTSCC------CCCCHHHHTTCTTCCEEECTTSCCEEE--EEETTCTTCCEEECCSSEEEE------EEECT
T ss_pred CCCCEEECcCCcc------CcCCHHHhhCCCcCCEEECCCCcCCcc--hhhhhcCCCCEEECcCCcccc------ccCCC
Confidence 4677777655443 2232 3455567777777777665321 124566777777777766521 11346
Q ss_pred CCcEEEecccCCCcccccccCCCCceEEecccc-cccceee-ecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecc
Q 040471 199 SLEDFEISACWGLKNLCVSKAHKLKKLAIYTFY-KDIGIVE-IVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLR 276 (340)
Q Consensus 199 ~L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~-~~~~~~~-~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~ 276 (340)
+|++|+++++. +..+....+++|+.|+++++. ....... ...++|+.| .++++.+++.....+...+++|++|+++
T Consensus 100 ~L~~L~l~~n~-l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 177 (317)
T 3o53_A 100 SIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL-DLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (317)
T ss_dssp TCCEEECCSSC-CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEE-ECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred CcCEEECCCCc-cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEE-ECCCCCCCcccHHHHhhccCcCCEEECC
Confidence 66666666653 222222334556666665554 1111111 134455554 4554444443333333345555555555
Q ss_pred cCCCCccccc--ccccccEEEeecC
Q 040471 277 FCRLPEKVKI--SSNQLKNLHFNSC 299 (340)
Q Consensus 277 ~c~~i~~~~~--~~~~L~~L~l~~c 299 (340)
+|. ++.++. .+++|++|+++++
T Consensus 178 ~N~-l~~~~~~~~l~~L~~L~Ls~N 201 (317)
T 3o53_A 178 YNF-IYDVKGQVVFAKLKTLDLSSN 201 (317)
T ss_dssp TSC-CCEEECCCCCTTCCEEECCSS
T ss_pred CCc-CcccccccccccCCEEECCCC
Confidence 543 222211 1345555555544
No 21
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.22 E-value=2.8e-11 Score=111.58 Aligned_cols=193 Identities=15% Similarity=0.117 Sum_probs=130.1
Q ss_pred cCccEEEEEeecCCCCCccccCC-ccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILP-QTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP 198 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p 198 (340)
++++.|++..+.. ..++ ..+..+++|++|+|+++.+..........+++|++|+++++.++.- ....+..++
T Consensus 88 ~~L~~L~Ls~n~i------~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~ 160 (440)
T 3zyj_A 88 RHLEILQLSRNHI------RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI-PSYAFNRIP 160 (440)
T ss_dssp SSCCEEECCSSCC------CEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEE-CTTTTTTCT
T ss_pred CCCCEEECCCCcC------CccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccccc-CHHHhhhCc
Confidence 5788888866544 2333 4456688999999999877643323456789999999998876321 112356789
Q ss_pred CCcEEEecccCCCccc---ccccCCCCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEe
Q 040471 199 SLEDFEISACWGLKNL---CVSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLL 274 (340)
Q Consensus 199 ~L~~L~l~~c~~~~~~---~~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~ 274 (340)
+|++|++++|..+..+ .+.++++|+.|+++++. ..+.. ....++|+.| ++.++.+++... ..+.++++|++|+
T Consensus 161 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L-~Ls~N~l~~~~~-~~~~~l~~L~~L~ 237 (440)
T 3zyj_A 161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDEL-DLSGNHLSAIRP-GSFQGLMHLQKLW 237 (440)
T ss_dssp TCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEE-ECTTSCCCEECT-TTTTTCTTCCEEE
T ss_pred ccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEE-ECCCCccCccCh-hhhccCccCCEEE
Confidence 9999999988776554 34567899999999886 22211 2256677777 777766654322 2356789999999
Q ss_pred cccCCCCccccc----ccccccEEEeecCcch---hhhccCCCCeeEEEEeccCCC
Q 040471 275 LRFCRLPEKVKI----SSNQLKNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNP 323 (340)
Q Consensus 275 l~~c~~i~~~~~----~~~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~ 323 (340)
++++. ++.+.. .+++|+.|+++++.-- .......++|+.|++.++...
T Consensus 238 L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 238 MIQSQ-IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTCC-CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCCc-eeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 99765 443322 2588999999887432 222344688999999887654
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.22 E-value=5.8e-11 Score=110.55 Aligned_cols=194 Identities=13% Similarity=0.056 Sum_probs=101.7
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS 199 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 199 (340)
.++++|++..+.. ....+..+..+++|+.|+++++.+..........+++|++|++.++.++.-. ...+..+++
T Consensus 104 ~~L~~L~Ls~n~i-----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~ 177 (477)
T 2id5_A 104 SNLTKLDISENKI-----VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP-TEALSHLHG 177 (477)
T ss_dssp TTCCEEECTTSCC-----CEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC-HHHHTTCTT
T ss_pred CCCCEEECCCCcc-----ccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC-hhHhcccCC
Confidence 3555555543332 1122334445666666666665543322223456677777777777663211 223456777
Q ss_pred CcEEEecccCCC--cccccccCCCCceEEeccccccccee---eecCcCcceEeccCceeeccHHHHHHHcCCCcccEEe
Q 040471 200 LEDFEISACWGL--KNLCVSKAHKLKKLAIYTFYKDIGIV---EIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLL 274 (340)
Q Consensus 200 L~~L~l~~c~~~--~~~~~~~~~~L~~L~i~~~~~~~~~~---~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~ 274 (340)
|+.|++.++..- ....+..+++|+.|+++++. ....+ ....++|+.| .+.++.++.-. ...+.++++|++|+
T Consensus 178 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L-~l~~n~l~~~~-~~~~~~l~~L~~L~ 254 (477)
T 2id5_A 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP-YLDTMTPNCLYGLNLTSL-SITHCNLTAVP-YLAVRHLVYLRFLN 254 (477)
T ss_dssp CCEEEEESCCCCEECTTCSCSCTTCCEEEEECCT-TCCEECTTTTTTCCCSEE-EEESSCCCSCC-HHHHTTCTTCCEEE
T ss_pred CcEEeCCCCcCcEeChhhcccCcccceeeCCCCc-cccccCcccccCccccEE-ECcCCcccccC-HHHhcCccccCeeE
Confidence 777777776432 12234456777777777654 11111 1223356665 55555544322 12356677788888
Q ss_pred cccCCCCccccc----ccccccEEEeecCcch---hhhccCCCCeeEEEEeccCCC
Q 040471 275 LRFCRLPEKVKI----SSNQLKNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNP 323 (340)
Q Consensus 275 l~~c~~i~~~~~----~~~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~ 323 (340)
+++|. ++.++. .+++|++|++.++.-- .......++|+.|++.++...
T Consensus 255 Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 255 LSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309 (477)
T ss_dssp CCSSC-CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred CCCCc-CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc
Confidence 77665 333322 2466777777665421 111223466666666665443
No 23
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.21 E-value=1.3e-11 Score=108.52 Aligned_cols=199 Identities=17% Similarity=0.110 Sum_probs=138.5
Q ss_pred HHHHHcCccEEEEEeecCCCCCccccCCccc--cCCCCccEEEeeceeCCCCCCcccccC-----cccceEecceEeeCh
Q 040471 115 GLAVDNGIKDLVLMVHNMTQEDTVCILPQTI--FSAKSMATLSLFGCRMEQPSDTTTIRL-----DSLKKLTLENVYIND 187 (340)
Q Consensus 115 ~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~~~~~~~~~~~~~-----~~L~~L~L~~~~~~~ 187 (340)
......++++|++..+.. ...+|..+ ..+++|++|+++++.+... ......+ ++|++|+++++.++.
T Consensus 90 ~~~~l~~L~~L~L~~n~l-----~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~ 163 (312)
T 1wwl_A 90 RVLGISGLQELTLENLEV-----TGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLN 163 (312)
T ss_dssp HHHTTSCCCEEEEEEEBC-----BSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCC
T ss_pred HhcCcCCccEEEccCCcc-----cchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCcc
Confidence 333457999999988865 23566655 6689999999999987653 2333344 899999999998732
Q ss_pred HHHHHHHhcCCCCcEEEecccCCCcc------cccccCCCCceEEecccc-ccccee----eecCcCcceEeccCceeec
Q 040471 188 QMFQKLTNECPSLEDFEISACWGLKN------LCVSKAHKLKKLAIYTFY-KDIGIV----EIVVPSLQQQLMLTSVWFM 256 (340)
Q Consensus 188 ~~l~~l~~~~p~L~~L~l~~c~~~~~------~~~~~~~~L~~L~i~~~~-~~~~~~----~~~~p~L~~ll~l~~~~i~ 256 (340)
... ..+..+++|++|+++++.-... +....+++|++|+++++. .....+ ....++|+.| +++++.++
T Consensus 164 ~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L-~Ls~N~l~ 241 (312)
T 1wwl_A 164 FSC-EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL-DLSHNSLR 241 (312)
T ss_dssp CCT-TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEE-ECTTSCCC
T ss_pred chH-HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEE-ECCCCcCC
Confidence 211 2245789999999999874332 122578999999999887 211121 1256889988 77777776
Q ss_pred cHHHHHHHcCCCcccEEecccCCCCccccccc-ccccEEEeecCcchhhh--ccCCCCeeEEEEeccCCC
Q 040471 257 DEEFDRFISKFPLLEDLLLRFCRLPEKVKISS-NQLKNLHFNSCENLKAI--DTDTPNLLSFTFSYDFNP 323 (340)
Q Consensus 257 ~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~-~~L~~L~l~~c~~l~~~--~~~~p~L~~L~~~~~~~~ 323 (340)
+......+..+++|++|++++|. ++.++... ++|++|+++++.- ..+ ....|+|+.|++.++...
T Consensus 242 ~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~~L~~L~Ls~N~l-~~~p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 242 DAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLPAKLSVLDLSYNRL-DRNPSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp SSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCCSEEEEEECCSSCC-CSCCCTTTSCEEEEEECTTCTTT
T ss_pred cccchhhhhhcCCCCEEECCCCc-cChhhhhccCCceEEECCCCCC-CCChhHhhCCCCCEEeccCCCCC
Confidence 64322234567999999999876 55554443 6999999998743 222 335689999999997664
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.21 E-value=1.2e-10 Score=108.11 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=16.8
Q ss_pred ccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEee
Q 040471 145 IFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYI 185 (340)
Q Consensus 145 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 185 (340)
+..+++|+.|++++|.+... +....+++|+.|++.++.+
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l 211 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQI 211 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred hccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcc
Confidence 33445555555555443321 1233344444444444443
No 25
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.20 E-value=2e-11 Score=105.87 Aligned_cols=194 Identities=12% Similarity=0.049 Sum_probs=96.6
Q ss_pred cCccEEEEEeecCCCCCccccCC-ccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEe-eChHHHHHHHhcC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILP-QTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVY-INDQMFQKLTNEC 197 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~~ 197 (340)
+++++|++..+.. ..++ ..+..+++|++|+++++.+..........+++|++|+++++. +..-. ...+..+
T Consensus 32 ~~l~~L~l~~n~i------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l 104 (285)
T 1ozn_A 32 AASQRIFLHGNRI------SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGL 104 (285)
T ss_dssp TTCSEEECTTSCC------CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTC
T ss_pred CCceEEEeeCCcC------CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC-HHHhcCC
Confidence 3556666544332 2222 234456666666666665443222234456666666666664 31110 1113456
Q ss_pred CCCcEEEecccCCCc--ccccccCCCCceEEecccc-ccccee-eecCcCcceEeccCceeeccHHHHHHHcCCCcccEE
Q 040471 198 PSLEDFEISACWGLK--NLCVSKAHKLKKLAIYTFY-KDIGIV-EIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDL 273 (340)
Q Consensus 198 p~L~~L~l~~c~~~~--~~~~~~~~~L~~L~i~~~~-~~~~~~-~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L 273 (340)
++|++|++++|.-.. .-.+..+++|++|+++++. .....- ...+++|+.| .+.++.+++-.. ..+.++++|++|
T Consensus 105 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~-~~~~~l~~L~~L 182 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL-FLHGNRISSVPE-RAFRGLHSLDRL 182 (285)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-ECCSSCCCEECT-TTTTTCTTCCEE
T ss_pred cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEE-ECCCCcccccCH-HHhcCccccCEE
Confidence 666666666653221 1123445666666666654 111111 1135556665 555544432111 124456777777
Q ss_pred ecccCCCCccc-cc---ccccccEEEeecCcch---hhhccCCCCeeEEEEeccCCC
Q 040471 274 LLRFCRLPEKV-KI---SSNQLKNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNP 323 (340)
Q Consensus 274 ~l~~c~~i~~~-~~---~~~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~ 323 (340)
++++|.. +.. +. .+++|++|+++++.-- .......++|+.|++.++...
T Consensus 183 ~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 183 LLHQNRV-AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp ECCSSCC-CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ECCCCcc-cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 7776653 322 11 2467777777766432 122234577777777775543
No 26
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.20 E-value=2.3e-11 Score=113.51 Aligned_cols=163 Identities=18% Similarity=0.153 Sum_probs=77.4
Q ss_pred CccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCC
Q 040471 121 GIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSL 200 (340)
Q Consensus 121 ~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L 200 (340)
+++.|++..+.. ....|..+..+++|++|+|++|.+... .....+++|++|+|+++.++. ....|+|
T Consensus 35 ~L~~L~Ls~n~l-----~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L 101 (487)
T 3oja_A 35 NVKELDLSGNPL-----SQISAADLAPFTKLELLNLSSNVLYET--LDLESLSTLRTLDLNNNYVQE------LLVGPSI 101 (487)
T ss_dssp GCCEEECCSSCC-----CCCCGGGGTTCTTCCEEECTTSCCEEE--EECTTCTTCCEEECCSSEEEE------EEECTTC
T ss_pred CccEEEeeCCcC-----CCCCHHHHhCCCCCCEEEeeCCCCCCC--cccccCCCCCEEEecCCcCCC------CCCCCCc
Confidence 566666655443 112233455566777777776655321 124456667777776666521 1123666
Q ss_pred cEEEecccCCCcccccccCCCCceEEecccc-cccceee-ecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccC
Q 040471 201 EDFEISACWGLKNLCVSKAHKLKKLAIYTFY-KDIGIVE-IVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFC 278 (340)
Q Consensus 201 ~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~-~~~~~~~-~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c 278 (340)
+.|++++|.- ..+....+++|+.|+++++. ....... ..+++|+.| .++++.+++.....+...+++|++|++++|
T Consensus 102 ~~L~L~~N~l-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 102 ETLHAANNNI-SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL-DLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp CEEECCSSCC-CCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEE-ECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred CEEECcCCcC-CCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEE-ECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 6666666532 22222234556666665554 1211111 134555554 455544444333333334555555555554
Q ss_pred CCCccccc--ccccccEEEeecC
Q 040471 279 RLPEKVKI--SSNQLKNLHFNSC 299 (340)
Q Consensus 279 ~~i~~~~~--~~~~L~~L~l~~c 299 (340)
.. +.++. .+++|+.|+++++
T Consensus 180 ~l-~~~~~~~~l~~L~~L~Ls~N 201 (487)
T 3oja_A 180 FI-YDVKGQVVFAKLKTLDLSSN 201 (487)
T ss_dssp CC-CEEECCCCCTTCCEEECCSS
T ss_pred cc-ccccccccCCCCCEEECCCC
Confidence 42 22211 1345555555544
No 27
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.20 E-value=5.9e-12 Score=110.31 Aligned_cols=198 Identities=12% Similarity=0.038 Sum_probs=123.6
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS 199 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 199 (340)
+++++|++..+... .....+..+..+++|++|+++++.+.. .......+++|++|++.++.++.......+..+++
T Consensus 52 ~~L~~L~L~~n~l~---~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 127 (306)
T 2z66_A 52 TQLTKLSLSSNGLS---FKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127 (306)
T ss_dssp TTCSEEECCSSCCC---EEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTT
T ss_pred ccCCEEECCCCccC---cccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccC
Confidence 57888888655431 111224455567888888888876543 22235578889999998887732211123567888
Q ss_pred CcEEEecccCCCc--ccccccCCCCceEEecccccc---cceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEe
Q 040471 200 LEDFEISACWGLK--NLCVSKAHKLKKLAIYTFYKD---IGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLL 274 (340)
Q Consensus 200 L~~L~l~~c~~~~--~~~~~~~~~L~~L~i~~~~~~---~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~ 274 (340)
|++|++++|..-. .-.+..+++|+.|+++++.-. .......+++|+.| .+.++.+++... ..+..+++|++|+
T Consensus 128 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L-~Ls~n~l~~~~~-~~~~~l~~L~~L~ 205 (306)
T 2z66_A 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL-DLSQCQLEQLSP-TAFNSLSSLQVLN 205 (306)
T ss_dssp CCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE-ECTTSCCCEECT-TTTTTCTTCCEEE
T ss_pred CCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE-ECCCCCcCCcCH-HHhcCCCCCCEEE
Confidence 9999998875321 123456788999999887611 22222356778887 777766654321 2346688899999
Q ss_pred cccCCCCccccc----ccccccEEEeecCcchhh---hccCC-CCeeEEEEeccCCCC
Q 040471 275 LRFCRLPEKVKI----SSNQLKNLHFNSCENLKA---IDTDT-PNLLSFTFSYDFNPI 324 (340)
Q Consensus 275 l~~c~~i~~~~~----~~~~L~~L~l~~c~~l~~---~~~~~-p~L~~L~~~~~~~~~ 324 (340)
+++|.. +.++. .+++|+.|+++++.-... ..... ++|+.|++.|+....
T Consensus 206 L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 206 MSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CTTSCC-SBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CCCCcc-CccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 987763 33322 257899999988754211 11223 488999998866543
No 28
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.19 E-value=2.8e-11 Score=111.96 Aligned_cols=193 Identities=14% Similarity=0.066 Sum_probs=133.1
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS 199 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 199 (340)
.+++.|++..+.. ....+..+..+++|+.|+|+++.+..........+++|++|+|+++.++.- ....+..+++
T Consensus 75 ~~l~~L~L~~n~i-----~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~ 148 (452)
T 3zyi_A 75 SNTRYLNLMENNI-----QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI-PSGAFEYLSK 148 (452)
T ss_dssp TTCSEEECCSSCC-----CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC-CTTTSSSCTT
T ss_pred CCccEEECcCCcC-----ceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc-ChhhhcccCC
Confidence 4788888866554 123355567789999999999877543333556789999999999877321 1223467899
Q ss_pred CcEEEecccCCC--cccccccCCCCceEEecccccccceee----ecCcCcceEeccCceeeccHHHHHHHcCCCcccEE
Q 040471 200 LEDFEISACWGL--KNLCVSKAHKLKKLAIYTFYKDIGIVE----IVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDL 273 (340)
Q Consensus 200 L~~L~l~~c~~~--~~~~~~~~~~L~~L~i~~~~~~~~~~~----~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L 273 (340)
|++|+++++.-- ....+..+++|+.|+++++. ....+. ..+++|+.| .+.++.+++-. -+..+++|++|
T Consensus 149 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L-~L~~n~l~~~~---~~~~l~~L~~L 223 (452)
T 3zyi_A 149 LRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK-KLEYISEGAFEGLFNLKYL-NLGMCNIKDMP---NLTPLVGLEEL 223 (452)
T ss_dssp CCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT-TCCEECTTTTTTCTTCCEE-ECTTSCCSSCC---CCTTCTTCCEE
T ss_pred CCEEECCCCCcceeCHhHHhcCCcccEEeCCCCC-CccccChhhccCCCCCCEE-ECCCCcccccc---cccccccccEE
Confidence 999999988532 12235568999999999865 222222 256788888 77776665431 25678999999
Q ss_pred ecccCCCCccc-c---cccccccEEEeecCcch---hhhccCCCCeeEEEEeccCCCC
Q 040471 274 LLRFCRLPEKV-K---ISSNQLKNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNPI 324 (340)
Q Consensus 274 ~l~~c~~i~~~-~---~~~~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~~ 324 (340)
++++|.. +.+ + ..+++|++|++.++.-- .......++|+.|++.++....
T Consensus 224 ~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 280 (452)
T 3zyi_A 224 EMSGNHF-PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280 (452)
T ss_dssp ECTTSCC-SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred ECcCCcC-cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc
Confidence 9998764 333 2 23689999999987542 1223456999999999976654
No 29
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.18 E-value=2.2e-11 Score=110.27 Aligned_cols=201 Identities=13% Similarity=0.056 Sum_probs=122.2
Q ss_pred cCccEEEEEeecCCCCCccccCCcc-------ccCCCCccEEEeeceeCCCCC----CcccccCcccceEecceEeeChH
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQT-------IFSAKSMATLSLFGCRMEQPS----DTTTIRLDSLKKLTLENVYINDQ 188 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~-------~~~~~~L~~L~L~~~~~~~~~----~~~~~~~~~L~~L~L~~~~~~~~ 188 (340)
++++.|++..+.... -...+|.. +..+++|++|+|++|.+.... ......+++|++|+|+++.+++.
T Consensus 60 ~~L~~L~Ls~~~~~~--l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 137 (386)
T 2ca6_A 60 KDLEIAEFSDIFTGR--VKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ 137 (386)
T ss_dssp TTCCEEECCSCCTTS--CGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH
T ss_pred CCccEEeCcccccCc--cccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHH
Confidence 577888876543210 11123333 356788888888888775521 12335678888888888877543
Q ss_pred HHHHH---HhcC---------CCCcEEEecccCCC-ccc-----ccccCCCCceEEeccccccc------ce-eeecCcC
Q 040471 189 MFQKL---TNEC---------PSLEDFEISACWGL-KNL-----CVSKAHKLKKLAIYTFYKDI------GI-VEIVVPS 243 (340)
Q Consensus 189 ~l~~l---~~~~---------p~L~~L~l~~c~~~-~~~-----~~~~~~~L~~L~i~~~~~~~------~~-~~~~~p~ 243 (340)
....+ +..+ ++|++|++++|.-- ..+ .+..+++|+.|++++|.-.. .. ....+++
T Consensus 138 ~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~ 217 (386)
T 2ca6_A 138 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE 217 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTT
T ss_pred HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCC
Confidence 33333 3333 88888888877432 111 23356788888888776211 11 1225677
Q ss_pred cceEeccCceeeccHH---HHHHHcCCCcccEEecccCCCCccc-----cc-----ccccccEEEeecCcchh----hhc
Q 040471 244 LQQQLMLTSVWFMDEE---FDRFISKFPLLEDLLLRFCRLPEKV-----KI-----SSNQLKNLHFNSCENLK----AID 306 (340)
Q Consensus 244 L~~ll~l~~~~i~~~~---~~~l~~~~~~L~~L~l~~c~~i~~~-----~~-----~~~~L~~L~l~~c~~l~----~~~ 306 (340)
|+.| .+.++.+++.+ +...+..+++|++|++++|. +++. +. .+++|++|++++|.--. .+.
T Consensus 218 L~~L-~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~ 295 (386)
T 2ca6_A 218 LKVL-DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 295 (386)
T ss_dssp CCEE-ECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred ccEE-ECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH
Confidence 7777 77777777543 34456778888888888776 4332 11 16788888888875321 122
Q ss_pred ----cCCCCeeEEEEeccCCCC
Q 040471 307 ----TDTPNLLSFTFSYDFNPI 324 (340)
Q Consensus 307 ----~~~p~L~~L~~~~~~~~~ 324 (340)
...|+|++|++.++....
T Consensus 296 ~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 296 TVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHHhcCCCceEEEccCCcCCc
Confidence 335888888888876654
No 30
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.18 E-value=1.9e-11 Score=113.24 Aligned_cols=82 Identities=17% Similarity=0.025 Sum_probs=43.9
Q ss_pred cCcCcceEeccCceeeccHHHHHHH----cCCCcccEEecccCCCCccc-----cc---ccccccEEEeecCcch-----
Q 040471 240 VVPSLQQQLMLTSVWFMDEEFDRFI----SKFPLLEDLLLRFCRLPEKV-----KI---SSNQLKNLHFNSCENL----- 302 (340)
Q Consensus 240 ~~p~L~~ll~l~~~~i~~~~~~~l~----~~~~~L~~L~l~~c~~i~~~-----~~---~~~~L~~L~l~~c~~l----- 302 (340)
.+++|+.+ .+.++.+++..+..+. ..+++|++|++++|. +++. +. .+++|++|+++++.--
T Consensus 225 ~~~~L~~L-~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 225 SKASLREL-ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HCTTCCEE-ECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred hCCCccEE-eccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 34566665 6666666555443322 346677777777663 4332 11 1466777777766421
Q ss_pred ---hhhccCCCCeeEEEEeccCCC
Q 040471 303 ---KAIDTDTPNLLSFTFSYDFNP 323 (340)
Q Consensus 303 ---~~~~~~~p~L~~L~~~~~~~~ 323 (340)
..+....++|+.|++.++...
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~ 326 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFT 326 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCB
T ss_pred HHHHHhccCCccceeeEcCCCCCc
Confidence 111122357777777775544
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.18 E-value=6.3e-11 Score=110.32 Aligned_cols=196 Identities=14% Similarity=0.078 Sum_probs=111.2
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS 199 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 199 (340)
+++++|++..+.. ....|..+..+++|++|+|+++.+..........+++|++|+++++.+... ....+..+++
T Consensus 56 ~~L~~L~L~~n~i-----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~ 129 (477)
T 2id5_A 56 PHLEELELNENIV-----SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLYN 129 (477)
T ss_dssp TTCCEEECTTSCC-----CEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE-CTTTTTTCTT
T ss_pred CCCCEEECCCCcc-----CEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC-ChhHcccccc
Confidence 5677777754433 122344555677777777777765442222345677777777777665211 1112356777
Q ss_pred CcEEEecccCCC--cccccccCCCCceEEecccc-cccce-eeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEec
Q 040471 200 LEDFEISACWGL--KNLCVSKAHKLKKLAIYTFY-KDIGI-VEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLL 275 (340)
Q Consensus 200 L~~L~l~~c~~~--~~~~~~~~~~L~~L~i~~~~-~~~~~-~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l 275 (340)
|++|+++++... ..-.+..+++|+.|+++++. ..... ....+++|+.+ .+.++.+..... ..+..+++|++|++
T Consensus 130 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L-~l~~n~i~~~~~-~~~~~l~~L~~L~l 207 (477)
T 2id5_A 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL-RLRHLNINAIRD-YSFKRLYRLKVLEI 207 (477)
T ss_dssp CCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEE-EEESCCCCEECT-TCSCSCTTCCEEEE
T ss_pred CCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEE-eCCCCcCcEeCh-hhcccCcccceeeC
Confidence 777777766321 11234456777777777765 11111 11245666666 444444332111 12456777888888
Q ss_pred ccCCCCcccccc---cccccEEEeecCcch---hhhccCCCCeeEEEEeccCCC
Q 040471 276 RFCRLPEKVKIS---SNQLKNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNP 323 (340)
Q Consensus 276 ~~c~~i~~~~~~---~~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~ 323 (340)
++|..++.++.. ..+|++|++++|.-- .......++|+.|+++++...
T Consensus 208 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 261 (477)
T 2id5_A 208 SHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261 (477)
T ss_dssp ECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC
T ss_pred CCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC
Confidence 777665554433 347888888877431 112245688999998886654
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.18 E-value=1.5e-10 Score=104.92 Aligned_cols=62 Identities=13% Similarity=0.116 Sum_probs=26.2
Q ss_pred cCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEeccc
Q 040471 146 FSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISAC 208 (340)
Q Consensus 146 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c 208 (340)
..+++|++|+++++.+..........+++|++|+++++.++.-. ...+..+++|++|+++++
T Consensus 114 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSN 175 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTSSCTTCCEEECCSS
T ss_pred cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC-hhhccCCCCCCEEECCCC
Confidence 34455555555555443211111234555555555554442100 011234455555555544
No 33
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.17 E-value=2.3e-11 Score=107.02 Aligned_cols=216 Identities=13% Similarity=0.033 Sum_probs=144.1
Q ss_pred cccceEEEEE-eccCcCCChhhHHHHHHHHHHcCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCc
Q 040471 89 FRMQELRLFQ-SFLDVKGSAPLLDKWIGLAVDNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDT 167 (340)
Q Consensus 89 ~~l~~l~l~~-~~~~~~~~~~~l~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~ 167 (340)
..++.+.+.. .... ......+ ...++++.|++..+.. ...+|..+..+++|++|+++++.+....+.
T Consensus 76 ~~L~~L~L~~~n~l~-~~~p~~l------~~l~~L~~L~Ls~n~l-----~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 143 (313)
T 1ogq_A 76 PYLNFLYIGGINNLV-GPIPPAI------AKLTQLHYLYITHTNV-----SGAIPDFLSQIKTLVTLDFSYNALSGTLPP 143 (313)
T ss_dssp TTCSEEEEEEETTEE-SCCCGGG------GGCTTCSEEEEEEECC-----EEECCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred CCCCeeeCCCCCccc-ccCChhH------hcCCCCCEEECcCCee-----CCcCCHHHhCCCCCCEEeCCCCccCCcCCh
Confidence 5788888873 2211 1111111 1236899999988765 246788888899999999999987654455
Q ss_pred ccccCcccceEecceEeeChHHHHHHHhcCC-CCcEEEecccCCCcc--cccccCCCCceEEecccc-c-ccceeeecCc
Q 040471 168 TTIRLDSLKKLTLENVYINDQMFQKLTNECP-SLEDFEISACWGLKN--LCVSKAHKLKKLAIYTFY-K-DIGIVEIVVP 242 (340)
Q Consensus 168 ~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p-~L~~L~l~~c~~~~~--~~~~~~~~L~~L~i~~~~-~-~~~~~~~~~p 242 (340)
....+++|++|++.++.++...... +..++ +|++|+++++.-... ..+..++ |+.|+++++. . .........+
T Consensus 144 ~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~ 221 (313)
T 1ogq_A 144 SISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK 221 (313)
T ss_dssp GGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTS
T ss_pred HHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCC
Confidence 6778999999999998874222222 34565 999999998853211 1344444 9999999886 2 1222223678
Q ss_pred CcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCccccc---ccccccEEEeecCcchhhhc--cCCCCeeEEEE
Q 040471 243 SLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKI---SSNQLKNLHFNSCENLKAID--TDTPNLLSFTF 317 (340)
Q Consensus 243 ~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~---~~~~L~~L~l~~c~~l~~~~--~~~p~L~~L~~ 317 (340)
+|+.+ .+.++.++...-. +..+++|++|++++|...+.++. .+++|++|+++++.-...+. ...++|+.+++
T Consensus 222 ~L~~L-~L~~N~l~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l 298 (313)
T 1ogq_A 222 NTQKI-HLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAY 298 (313)
T ss_dssp CCSEE-ECCSSEECCBGGG--CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGT
T ss_pred CCCEE-ECCCCceeeecCc--ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHh
Confidence 88888 7887777643222 57789999999998875334433 35899999999885432222 22366777777
Q ss_pred eccC
Q 040471 318 SYDF 321 (340)
Q Consensus 318 ~~~~ 321 (340)
.|+.
T Consensus 299 ~~N~ 302 (313)
T 1ogq_A 299 ANNK 302 (313)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 7644
No 34
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.17 E-value=4.3e-11 Score=110.32 Aligned_cols=193 Identities=10% Similarity=0.040 Sum_probs=131.7
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS 199 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 199 (340)
.+++.|++..+.. ....+..+..+++|+.|+|+++.+..........+++|++|+|+++.++.-. ...+..+++
T Consensus 64 ~~l~~L~L~~n~i-----~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~ 137 (440)
T 3zyj_A 64 TNTRLLNLHENQI-----QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP-NGAFVYLSK 137 (440)
T ss_dssp TTCSEEECCSCCC-----CEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC-TTTSCSCSS
T ss_pred CCCcEEEccCCcC-----CeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC-HhHhhcccc
Confidence 4778888866554 1222345667899999999998876533345567899999999998773211 123567899
Q ss_pred CcEEEecccCCC--cccccccCCCCceEEeccccccccee----eecCcCcceEeccCceeeccHHHHHHHcCCCcccEE
Q 040471 200 LEDFEISACWGL--KNLCVSKAHKLKKLAIYTFYKDIGIV----EIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDL 273 (340)
Q Consensus 200 L~~L~l~~c~~~--~~~~~~~~~~L~~L~i~~~~~~~~~~----~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L 273 (340)
|++|+++++.-- ....+..+++|+.|+++++. ....+ ...+++|+.| .+.++.++.-. -+..+++|++|
T Consensus 138 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L-~L~~n~l~~~~---~~~~l~~L~~L 212 (440)
T 3zyj_A 138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK-RLSYISEGAFEGLSNLRYL-NLAMCNLREIP---NLTPLIKLDEL 212 (440)
T ss_dssp CCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT-TCCEECTTTTTTCSSCCEE-ECTTSCCSSCC---CCTTCSSCCEE
T ss_pred CceeeCCCCcccccCHHHhhhCcccCEeCCCCCC-CcceeCcchhhcccccCee-cCCCCcCcccc---ccCCCcccCEE
Confidence 999999987532 22245568999999999865 22222 2257788888 77776655321 15678999999
Q ss_pred ecccCCCCccccc----ccccccEEEeecCcch---hhhccCCCCeeEEEEeccCCCC
Q 040471 274 LLRFCRLPEKVKI----SSNQLKNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNPI 324 (340)
Q Consensus 274 ~l~~c~~i~~~~~----~~~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~~ 324 (340)
++++|. ++.+.. .+++|++|++.++.-- .......++|+.|++.++....
T Consensus 213 ~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 269 (440)
T 3zyj_A 213 DLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL 269 (440)
T ss_dssp ECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC
T ss_pred ECCCCc-cCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc
Confidence 999875 444322 3689999999887542 1223456999999999976654
No 35
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.17 E-value=1.7e-10 Score=101.16 Aligned_cols=163 Identities=16% Similarity=0.141 Sum_probs=116.4
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS 199 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 199 (340)
++++.|++..+.. ..++. +..+++|+.|+++++.+... +....+++|++|+++++.++.- .. +..+++
T Consensus 63 ~~L~~L~L~~n~i------~~~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~ 130 (308)
T 1h6u_A 63 NNLIGLELKDNQI------TDLAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV--TP-LAGLSN 130 (308)
T ss_dssp TTCCEEECCSSCC------CCCGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCC--GG-GTTCTT
T ss_pred CCCCEEEccCCcC------CCChh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCc--hh-hcCCCC
Confidence 6889999876654 34554 67789999999999887652 3566789999999999888331 12 677899
Q ss_pred CcEEEecccCCCcccccccCCCCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccC
Q 040471 200 LEDFEISACWGLKNLCVSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFC 278 (340)
Q Consensus 200 L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c 278 (340)
|++|++++|.--....+..+++|+.|+++++. ..... ...+++|+.| .+.++.+++-.. +..+++|++|++++|
T Consensus 131 L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L-~l~~n~l~~~~~---l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTL-KADDNKISDISP---LASLPNLIEVHLKNN 205 (308)
T ss_dssp CCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEE-ECCSSCCCCCGG---GGGCTTCCEEECTTS
T ss_pred CCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEE-ECCCCccCcChh---hcCCCCCCEEEccCC
Confidence 99999998854332235677899999999886 22222 2356788887 777777665332 677899999999987
Q ss_pred CCCcccc-c-ccccccEEEeecCc
Q 040471 279 RLPEKVK-I-SSNQLKNLHFNSCE 300 (340)
Q Consensus 279 ~~i~~~~-~-~~~~L~~L~l~~c~ 300 (340)
.. +++. . .+++|+.|+++++.
T Consensus 206 ~l-~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 206 QI-SDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp CC-CBCGGGTTCTTCCEEEEEEEE
T ss_pred cc-CccccccCCCCCCEEEccCCe
Confidence 64 3332 2 36889999998764
No 36
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.17 E-value=1.4e-11 Score=77.72 Aligned_cols=40 Identities=25% Similarity=0.313 Sum_probs=34.4
Q ss_pred cCCccCCCchhHHHHHhcCCchhhhhhhhcccccchhhhc
Q 040471 6 GMDRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCI 45 (340)
Q Consensus 6 ~~d~i~~LPd~il~~Ifs~L~~~d~~~~s~vskrW~~l~~ 45 (340)
..+.|+.||+|++.+||+||+.+|+++++.|||+|+.+..
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 4467999999999999999999999999999999998754
No 37
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.16 E-value=2.6e-11 Score=108.40 Aligned_cols=153 Identities=16% Similarity=0.060 Sum_probs=76.9
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS 199 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 199 (340)
++++.|++..+.. ....+..+..+++|++|+++++.+..........+++|++|+++++.++.-.....+..+++
T Consensus 76 ~~L~~L~L~~n~l-----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~ 150 (353)
T 2z80_A 76 VNLQALVLTSNGI-----NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK 150 (353)
T ss_dssp TTCCEEECTTSCC-----CEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTT
T ss_pred CCCCEEECCCCcc-----CccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCC
Confidence 4566666644432 11223334556667777776666543211123456667777776665531100012345667
Q ss_pred CcEEEecccCCCccc---ccccCCCCceEEecccc-ccc-ceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEe
Q 040471 200 LEDFEISACWGLKNL---CVSKAHKLKKLAIYTFY-KDI-GIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLL 274 (340)
Q Consensus 200 L~~L~l~~c~~~~~~---~~~~~~~L~~L~i~~~~-~~~-~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~ 274 (340)
|++|++++|..+..+ .+..+++|+.|+++++. ... ......+++|+.+ .+.++.++.. ...++..+++|++|+
T Consensus 151 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L-~l~~n~l~~~-~~~~~~~~~~L~~L~ 228 (353)
T 2z80_A 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL-ILHMKQHILL-LEIFVDVTSSVECLE 228 (353)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE-EEECSCSTTH-HHHHHHHTTTEEEEE
T ss_pred CcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCee-cCCCCccccc-hhhhhhhcccccEEE
Confidence 777777666443332 33445666777766654 111 0111134455555 5555544322 122344567788888
Q ss_pred cccCC
Q 040471 275 LRFCR 279 (340)
Q Consensus 275 l~~c~ 279 (340)
+++|.
T Consensus 229 L~~n~ 233 (353)
T 2z80_A 229 LRDTD 233 (353)
T ss_dssp EESCB
T ss_pred CCCCc
Confidence 77654
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.14 E-value=4e-10 Score=99.70 Aligned_cols=189 Identities=16% Similarity=0.145 Sum_probs=102.5
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS 199 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 199 (340)
+++++|++..+.. ....|..+..+++|++|+++++.+... ....+++|++|++.++.++.-. ...+..+++
T Consensus 76 ~~L~~L~L~~n~l-----~~~~~~~~~~l~~L~~L~Ls~n~l~~l---~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~ 146 (330)
T 1xku_A 76 KNLHTLILINNKI-----SKISPGAFAPLVKLERLYLSKNQLKEL---PEKMPKTLQELRVHENEITKVR-KSVFNGLNQ 146 (330)
T ss_dssp TTCCEEECCSSCC-----CCBCTTTTTTCTTCCEEECCSSCCSBC---CSSCCTTCCEEECCSSCCCBBC-HHHHTTCTT
T ss_pred CCCCEEECCCCcC-----CeeCHHHhcCCCCCCEEECCCCcCCcc---ChhhcccccEEECCCCcccccC-HhHhcCCcc
Confidence 5778888765544 122355666778888888888766431 1112377888888877763221 233566788
Q ss_pred CcEEEecccCC----CcccccccCCCCceEEecccccccceeee-cCcCcceEeccCceeeccHHHHHHHcCCCcccEEe
Q 040471 200 LEDFEISACWG----LKNLCVSKAHKLKKLAIYTFYKDIGIVEI-VVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLL 274 (340)
Q Consensus 200 L~~L~l~~c~~----~~~~~~~~~~~L~~L~i~~~~~~~~~~~~-~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~ 274 (340)
|+.|+++++.. .....+..+++|+.|+++++. +..+.. ..++|+.+ .+.++.+++... ..+.++++|++|+
T Consensus 147 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~--l~~l~~~~~~~L~~L-~l~~n~l~~~~~-~~~~~l~~L~~L~ 222 (330)
T 1xku_A 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN--ITTIPQGLPPSLTEL-HLDGNKITKVDA-ASLKGLNNLAKLG 222 (330)
T ss_dssp CCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC--CCSCCSSCCTTCSEE-ECTTSCCCEECT-GGGTTCTTCCEEE
T ss_pred ccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc--cccCCccccccCCEE-ECCCCcCCccCH-HHhcCCCCCCEEE
Confidence 88888887643 122234556777777777665 111111 12556665 555544443211 1234566666666
Q ss_pred cccCCCCccccc----ccccccEEEeecCcchhhh---ccCCCCeeEEEEeccCCC
Q 040471 275 LRFCRLPEKVKI----SSNQLKNLHFNSCENLKAI---DTDTPNLLSFTFSYDFNP 323 (340)
Q Consensus 275 l~~c~~i~~~~~----~~~~L~~L~l~~c~~l~~~---~~~~p~L~~L~~~~~~~~ 323 (340)
+++|. ++.++. .+++|++|++++|.- ..+ ....++|+.|++.++...
T Consensus 223 Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l-~~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 223 LSFNS-ISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp CCSSC-CCEECTTTGGGSTTCCEEECCSSCC-SSCCTTTTTCSSCCEEECCSSCCC
T ss_pred CCCCc-CceeChhhccCCCCCCEEECCCCcC-ccCChhhccCCCcCEEECCCCcCC
Confidence 66554 222221 245666666665532 111 123455666666654443
No 39
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.14 E-value=1.8e-10 Score=111.15 Aligned_cols=175 Identities=11% Similarity=0.053 Sum_probs=113.8
Q ss_pred cCccEEEEEeecCCCC-----Cccc-------cCCcccc--CCCCccEEEeeceeCCCCCCcccccCcccceEecceEe-
Q 040471 120 NGIKDLVLMVHNMTQE-----DTVC-------ILPQTIF--SAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVY- 184 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~-----~~~~-------~l~~~~~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~- 184 (340)
.++++|++..+..... +... .+|..+. .+++|++|++++|.+....+.....+++|++|+++++.
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~ 285 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence 6899999987764100 0000 1898888 89999999999998765555567789999999999998
Q ss_pred eCh-HHHHHHH-----hcCCCCcEEEecccCCCccc----ccccCCCCceEEecccc-c-ccceeeecCcCcceEeccCc
Q 040471 185 IND-QMFQKLT-----NECPSLEDFEISACWGLKNL----CVSKAHKLKKLAIYTFY-K-DIGIVEIVVPSLQQQLMLTS 252 (340)
Q Consensus 185 ~~~-~~l~~l~-----~~~p~L~~L~l~~c~~~~~~----~~~~~~~L~~L~i~~~~-~-~~~~~~~~~p~L~~ll~l~~ 252 (340)
++. .....+. ..+++|++|++++|.-- .+ .+..+++|+.|+++++. . .+. .....++|+.| .+.+
T Consensus 286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L-~L~~ 362 (636)
T 4eco_A 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASL-NLAY 362 (636)
T ss_dssp SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEE-ECCS
T ss_pred CccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEE-ECCC
Confidence 665 2222222 34699999999998543 32 35567899999999876 2 222 12245566666 6666
Q ss_pred eeeccHHHHHHHcCCCc-ccEEecccCCCCcccccc-----cccccEEEeecCc
Q 040471 253 VWFMDEEFDRFISKFPL-LEDLLLRFCRLPEKVKIS-----SNQLKNLHFNSCE 300 (340)
Q Consensus 253 ~~i~~~~~~~l~~~~~~-L~~L~l~~c~~i~~~~~~-----~~~L~~L~l~~c~ 300 (340)
+.++ .+...+.++++ |++|++++|. ++.++.. +++|+.|+++++.
T Consensus 363 N~l~--~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~ 413 (636)
T 4eco_A 363 NQIT--EIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNE 413 (636)
T ss_dssp SEEE--ECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSC
T ss_pred Cccc--cccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCc
Confidence 6555 22222455666 7777777665 3333322 2356666666654
No 40
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.14 E-value=3.7e-11 Score=105.17 Aligned_cols=172 Identities=15% Similarity=0.116 Sum_probs=85.9
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCC-cccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSD-TTTIRLDSLKKLTLENVYINDQMFQKLTNECP 198 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p 198 (340)
.++++|++..+.. ..+|..+..+++|++|+++++.+..... .....+++|++|+++++.++.. ....+..++
T Consensus 78 ~~L~~L~Ls~n~i------~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~ 150 (306)
T 2z66_A 78 TSLKYLDLSFNGV------ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLS 150 (306)
T ss_dssp SCCCEEECCSCSE------EEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC-STTTTTTCT
T ss_pred cccCEEECCCCcc------ccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc-chhhcccCc
Confidence 5666666654433 3455555566667777776665433111 2344566677777666654211 111234566
Q ss_pred CCcEEEecccCCCc---ccccccCCCCceEEecccc-cccc-eeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEE
Q 040471 199 SLEDFEISACWGLK---NLCVSKAHKLKKLAIYTFY-KDIG-IVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDL 273 (340)
Q Consensus 199 ~L~~L~l~~c~~~~---~~~~~~~~~L~~L~i~~~~-~~~~-~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L 273 (340)
+|++|+++++.... ...+..+++|+.|+++++. .... .....+++|+.| .+.++.+++.... .+.++++|++|
T Consensus 151 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~-~~~~l~~L~~L 228 (306)
T 2z66_A 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL-NMSHNNFFSLDTF-PYKCLNSLQVL 228 (306)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE-ECTTSCCSBCCSG-GGTTCTTCCEE
T ss_pred CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEE-ECCCCccCccChh-hccCcccCCEe
Confidence 67777766653221 1123445666777766654 1111 111134566665 5555554432111 13456667777
Q ss_pred ecccCCCCccccc---cc-ccccEEEeecCc
Q 040471 274 LLRFCRLPEKVKI---SS-NQLKNLHFNSCE 300 (340)
Q Consensus 274 ~l~~c~~i~~~~~---~~-~~L~~L~l~~c~ 300 (340)
++++|...+..+. .+ ++|++|+++++.
T Consensus 229 ~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp ECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 7766543222111 12 366666666543
No 41
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.14 E-value=3.6e-11 Score=107.51 Aligned_cols=171 Identities=13% Similarity=0.109 Sum_probs=115.9
Q ss_pred cCccEEEEEeecCCCCCccccCCc-cccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQ-TIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP 198 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p 198 (340)
+++++|++..+.. ..++. .+..+++|++|+++++.+..........+++|++|+++++.++.- ....+..++
T Consensus 52 ~~L~~L~l~~n~i------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~ 124 (353)
T 2z80_A 52 EAVKSLDLSNNRI------TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL-SSSWFKPLS 124 (353)
T ss_dssp TTCCEEECTTSCC------CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC-CHHHHTTCT
T ss_pred ccCcEEECCCCcC------cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC-CHhHhCCCc
Confidence 4788998866544 34444 567799999999999887543333466789999999999988421 123457799
Q ss_pred CCcEEEecccCCC--cc-cccccCCCCceEEecccc--cccce-eeecCcCcceEeccCceeeccHHHHHHHcCCCcccE
Q 040471 199 SLEDFEISACWGL--KN-LCVSKAHKLKKLAIYTFY--KDIGI-VEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLED 272 (340)
Q Consensus 199 ~L~~L~l~~c~~~--~~-~~~~~~~~L~~L~i~~~~--~~~~~-~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~ 272 (340)
+|++|+++++.-. .. -.+..+++|+.|+++++. ..... ....+++|+.+ .+.++.+++.. ...+..+++|++
T Consensus 125 ~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L-~l~~n~l~~~~-~~~l~~l~~L~~ 202 (353)
T 2z80_A 125 SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL-EIDASDLQSYE-PKSLKSIQNVSH 202 (353)
T ss_dssp TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE-EEEETTCCEEC-TTTTTTCSEEEE
T ss_pred cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE-ECCCCCcCccC-HHHHhccccCCe
Confidence 9999999988432 22 235568999999999874 11111 11246677776 55555544321 223567899999
Q ss_pred EecccCCCCccccc----ccccccEEEeecCc
Q 040471 273 LLLRFCRLPEKVKI----SSNQLKNLHFNSCE 300 (340)
Q Consensus 273 L~l~~c~~i~~~~~----~~~~L~~L~l~~c~ 300 (340)
|+++++. ++.++. .+++|++|+++++.
T Consensus 203 L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 203 LILHMKQ-HILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp EEEECSC-STTHHHHHHHHTTTEEEEEEESCB
T ss_pred ecCCCCc-cccchhhhhhhcccccEEECCCCc
Confidence 9999876 444333 25788888888764
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.14 E-value=2.4e-10 Score=103.59 Aligned_cols=192 Identities=14% Similarity=0.011 Sum_probs=121.3
Q ss_pred HcCccEEEEEeecCCCCCccccCC-ccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcC
Q 040471 119 DNGIKDLVLMVHNMTQEDTVCILP-QTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNEC 197 (340)
Q Consensus 119 ~~~l~~L~l~~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~ 197 (340)
.+++++|++..+.. ..++ ..+..+++|++|+++++.+..........+++|++|++.++.++. -...++..+
T Consensus 68 l~~L~~L~L~~n~i------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l 140 (390)
T 3o6n_A 68 FRQVELLNLNDLQI------EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNT 140 (390)
T ss_dssp CCCCSEEECTTSCC------CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTC
T ss_pred cccCcEEECCCCcc------cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc-CCHHHhcCC
Confidence 37899999866544 2333 356678999999999998765333445789999999999988741 112234678
Q ss_pred CCCcEEEecccCCC--cccccccCCCCceEEecccccccceee-ecCcCcceE------------------eccCceeec
Q 040471 198 PSLEDFEISACWGL--KNLCVSKAHKLKKLAIYTFYKDIGIVE-IVVPSLQQQ------------------LMLTSVWFM 256 (340)
Q Consensus 198 p~L~~L~l~~c~~~--~~~~~~~~~~L~~L~i~~~~~~~~~~~-~~~p~L~~l------------------l~l~~~~i~ 256 (340)
++|++|+++++.-- ..-.+..+++|+.|+++++. +..+. ...++|+.+ +.+.++.++
T Consensus 141 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~ 218 (390)
T 3o6n_A 141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN 218 (390)
T ss_dssp TTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC--CSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCC
T ss_pred CCCcEEECCCCccCccChhhccCCCCCCEEECCCCc--CCccccccccccceeecccccccccCCCCcceEEECCCCeee
Confidence 99999999988532 22235567899999999876 11111 123444444 133333322
Q ss_pred cHHHHHHHcCCCcccEEecccCCCCcccc--cccccccEEEeecCcch---hhhccCCCCeeEEEEeccCCCC
Q 040471 257 DEEFDRFISKFPLLEDLLLRFCRLPEKVK--ISSNQLKNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNPI 324 (340)
Q Consensus 257 ~~~~~~l~~~~~~L~~L~l~~c~~i~~~~--~~~~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~~ 324 (340)
... ....++|++|++++|.. ++.. ..+++|++|+++++.-- .......++|+.|++.++....
T Consensus 219 ~~~----~~~~~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 286 (390)
T 3o6n_A 219 VVR----GPVNVELTILKLQHNNL-TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 286 (390)
T ss_dssp EEE----CCCCSSCCEEECCSSCC-CCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE
T ss_pred ecc----ccccccccEEECCCCCC-cccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc
Confidence 210 12246777777776653 2222 12578888888887532 1223456889999998876553
No 43
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.13 E-value=4.5e-10 Score=91.75 Aligned_cols=146 Identities=16% Similarity=0.079 Sum_probs=75.9
Q ss_pred CCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCc--ccccccCCCCceE
Q 040471 148 AKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLK--NLCVSKAHKLKKL 225 (340)
Q Consensus 148 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~--~~~~~~~~~L~~L 225 (340)
+++|++|+++++.+.. . +....+++|++|++.++.+++- . .+..+++|++|++++|.--. .-.+..+++|+.|
T Consensus 43 l~~L~~L~l~~n~i~~-l-~~l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVTD-L-TGIEYAHNIKDLTINNIHATNY--N-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCSC-C-TTGGGCTTCSEEEEESCCCSCC--G-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCCccC-h-HHHhcCCCCCEEEccCCCCCcc--h-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 4455555555554432 1 1334455555555555543211 0 13445666666666543211 1123345666666
Q ss_pred EecccccccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCccccc--ccccccEEEeecCcchh
Q 040471 226 AIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKI--SSNQLKNLHFNSCENLK 303 (340)
Q Consensus 226 ~i~~~~~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~--~~~~L~~L~l~~c~~l~ 303 (340)
+++++. +++... ..+..+++|++|++++|..+++++. .+++|++|++++|.--.
T Consensus 118 ~Ls~n~-----------------------i~~~~~-~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 118 DISHSA-----------------------HDDSIL-TKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp ECCSSB-----------------------CBGGGH-HHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC
T ss_pred EecCCc-----------------------cCcHhH-HHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC
Confidence 666554 333222 2345677888888877765555432 25777888877764321
Q ss_pred -hhccCCCCeeEEEEeccCC
Q 040471 304 -AIDTDTPNLLSFTFSYDFN 322 (340)
Q Consensus 304 -~~~~~~p~L~~L~~~~~~~ 322 (340)
......|+|+.|++.|+..
T Consensus 174 ~~~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 174 YRGIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CTTGGGCSSCCEEEECBC--
T ss_pred hHHhccCCCCCEEEeeCccc
Confidence 1223458888888887654
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.12 E-value=2.9e-10 Score=108.86 Aligned_cols=62 Identities=13% Similarity=0.116 Sum_probs=29.5
Q ss_pred cCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEeccc
Q 040471 146 FSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISAC 208 (340)
Q Consensus 146 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c 208 (340)
..+++|++|+|++|.+..........+++|++|+++++.++.-. ...+..+++|+.|++++|
T Consensus 120 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 120 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSN 181 (597)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECTTS
T ss_pred cCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCC-hhhhhcCCcCcEEECcCC
Confidence 44556666666665544311112245566666666655542110 111334556666666554
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.12 E-value=2.9e-11 Score=112.02 Aligned_cols=225 Identities=16% Similarity=0.137 Sum_probs=150.4
Q ss_pred cccceEEEEEeccCcCCChhhHHHHHH-HHHHcCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCc
Q 040471 89 FRMQELRLFQSFLDVKGSAPLLDKWIG-LAVDNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDT 167 (340)
Q Consensus 89 ~~l~~l~l~~~~~~~~~~~~~l~~~l~-~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~ 167 (340)
+.++.+.+... .... ..|.. ....+++++|++..+... ......++..+..+++|++|+++++.+......
T Consensus 3 ~~l~~L~Ls~~----~l~~---~~~~~~~~~~~~L~~L~L~~~~l~-~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 74 (461)
T 1z7x_W 3 LDIQSLDIQCE----ELSD---ARWAELLPLLQQCQVVRLDDCGLT-EARCKDISSALRVNPALAELNLRSNELGDVGVH 74 (461)
T ss_dssp EEEEEEEEESC----CCCH---HHHHHHHHHHTTCSEEEEESSCCC-HHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHH
T ss_pred ccceehhhhhc----ccCc---hhHHHHHhhcCCccEEEccCCCCC-HHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHH
Confidence 45677777533 1222 22433 334479999999877651 011235677778899999999999876431111
Q ss_pred -ccccCc----ccceEecceEeeChH---HHHHHHhcCCCCcEEEecccCCCcccc--------cccCCCCceEEecccc
Q 040471 168 -TTIRLD----SLKKLTLENVYINDQ---MFQKLTNECPSLEDFEISACWGLKNLC--------VSKAHKLKKLAIYTFY 231 (340)
Q Consensus 168 -~~~~~~----~L~~L~L~~~~~~~~---~l~~l~~~~p~L~~L~l~~c~~~~~~~--------~~~~~~L~~L~i~~~~ 231 (340)
....++ +|++|++.++.+++. .+...+..+++|++|++++|. +.... ....++|++|++++|.
T Consensus 75 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 153 (461)
T 1z7x_W 75 CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCS 153 (461)
T ss_dssp HHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCC
Confidence 122344 799999999998654 455556789999999999986 33211 1124579999999986
Q ss_pred ccc------ceeeecCcCcceEeccCceeeccHHHHHHHc----CCCcccEEecccCCCCcccc-----c---ccccccE
Q 040471 232 KDI------GIVEIVVPSLQQQLMLTSVWFMDEEFDRFIS----KFPLLEDLLLRFCRLPEKVK-----I---SSNQLKN 293 (340)
Q Consensus 232 ~~~------~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~----~~~~L~~L~l~~c~~i~~~~-----~---~~~~L~~ 293 (340)
-.. ......+++|+.+ .+.++.+++.....+.. ..++|++|++++|. +++.+ . .+++|++
T Consensus 154 l~~~~~~~l~~~l~~~~~L~~L-~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~ 231 (461)
T 1z7x_W 154 LSAASCEPLASVLRAKPDFKEL-TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRE 231 (461)
T ss_dssp CBGGGHHHHHHHHHHCTTCCEE-ECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCE
T ss_pred CCHHHHHHHHHHHhhCCCCCEE-ECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccE
Confidence 111 1111246899998 88888888776655543 46799999999885 44432 1 2689999
Q ss_pred EEeecCcch--------hhhccCCCCeeEEEEeccCCCC
Q 040471 294 LHFNSCENL--------KAIDTDTPNLLSFTFSYDFNPI 324 (340)
Q Consensus 294 L~l~~c~~l--------~~~~~~~p~L~~L~~~~~~~~~ 324 (340)
|++++|.-- ..+....++|+.|++.++....
T Consensus 232 L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~ 270 (461)
T 1z7x_W 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA 270 (461)
T ss_dssp EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred EeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCH
Confidence 999998521 1222357999999999976653
No 46
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.11 E-value=1.8e-10 Score=109.46 Aligned_cols=195 Identities=14% Similarity=0.101 Sum_probs=95.1
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCc--------------------ccccCcccceEe
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDT--------------------TTIRLDSLKKLT 179 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~--------------------~~~~~~~L~~L~ 179 (340)
+++++|++..+.. ..+|..+..+ +|++|++++|.+.. ... ....+++|++|+
T Consensus 282 ~~L~~L~l~~~~l------~~l~~~~~~~-~L~~L~l~~n~~~~-l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~ 353 (570)
T 2z63_A 282 TNVSSFSLVSVTI------ERVKDFSYNF-GWQHLELVNCKFGQ-FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD 353 (570)
T ss_dssp TTCSEEEEESCEE------CSCCBCCSCC-CCSEEEEESCBCSS-CCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEE
T ss_pred CcccEEEecCccc------hhhhhhhccC-CccEEeeccCcccc-cCcccccccCEEeCcCCccccccccccCCCCCEEe
Confidence 5677777755433 3456555555 66666666665442 111 002344555555
Q ss_pred cceEeeChH-HHHHHHhcCCCCcEEEecccCCCccc-ccccCCCCceEEecccc-cccc--eeeecCcCcceEeccCcee
Q 040471 180 LENVYINDQ-MFQKLTNECPSLEDFEISACWGLKNL-CVSKAHKLKKLAIYTFY-KDIG--IVEIVVPSLQQQLMLTSVW 254 (340)
Q Consensus 180 L~~~~~~~~-~l~~l~~~~p~L~~L~l~~c~~~~~~-~~~~~~~L~~L~i~~~~-~~~~--~~~~~~p~L~~ll~l~~~~ 254 (340)
++++.++.. ........+++|++|++++|...... .+..+++|+.|+++++. .... .....+++|+.+ .+.++.
T Consensus 354 l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L-~l~~n~ 432 (570)
T 2z63_A 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL-DISHTH 432 (570)
T ss_dssp CCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE-ECTTSC
T ss_pred CcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEE-eCcCCc
Confidence 554443111 01112334555555555554321110 13345566666665554 1111 111234555555 555444
Q ss_pred eccHHHHHHHcCCCcccEEecccCCCCc-ccc---cccccccEEEeecCcchh---hhccCCCCeeEEEEeccCCCC
Q 040471 255 FMDEEFDRFISKFPLLEDLLLRFCRLPE-KVK---ISSNQLKNLHFNSCENLK---AIDTDTPNLLSFTFSYDFNPI 324 (340)
Q Consensus 255 i~~~~~~~l~~~~~~L~~L~l~~c~~i~-~~~---~~~~~L~~L~l~~c~~l~---~~~~~~p~L~~L~~~~~~~~~ 324 (340)
+.+.. ...+.++++|++|++++|...+ .++ ..+++|++|++++|.-.. ......++|+.|++.++....
T Consensus 433 l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 508 (570)
T 2z63_A 433 TRVAF-NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508 (570)
T ss_dssp CEECC-TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred ccccc-hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCC
Confidence 33321 1234556777777777665321 122 225778888887775321 112345788888888765543
No 47
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.11 E-value=1.7e-11 Score=120.79 Aligned_cols=196 Identities=16% Similarity=0.013 Sum_probs=135.4
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCc--ccccCcccceEecceEeeChHHHHHHHhcC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDT--TTIRLDSLKKLTLENVYINDQMFQKLTNEC 197 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~ 197 (340)
.++++|++...... +...+|..+..+++|++|+|++|.+....+. ....+++|++|+++++.++......+...+
T Consensus 74 ~~L~~L~~l~~~~~---~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 150 (768)
T 3rgz_A 74 LSLTGLESLFLSNS---HINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL 150 (768)
T ss_dssp TTCTTCCEEECTTS---CEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCC
T ss_pred hccCcccccCCcCC---CcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccC
Confidence 34555555333221 2345677888899999999999887543333 567899999999999987432222233678
Q ss_pred CCCcEEEecccCCCccc--c---cccCCCCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCccc
Q 040471 198 PSLEDFEISACWGLKNL--C---VSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLE 271 (340)
Q Consensus 198 p~L~~L~l~~c~~~~~~--~---~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~ 271 (340)
++|++|++++|.-.... . +.++++|++|+++++. .+... ...+++|+.+ ++.++.+++..-. +.++++|+
T Consensus 151 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L-~Ls~n~l~~~~~~--l~~l~~L~ 226 (768)
T 3rgz_A 151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFL-DVSSNNFSTGIPF--LGDCSALQ 226 (768)
T ss_dssp TTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEE-ECCSSCCCSCCCB--CTTCCSCC
T ss_pred CCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEE-ECcCCcCCCCCcc--cccCCCCC
Confidence 99999999998543221 1 5678999999999887 22111 1467889988 7777776543222 67899999
Q ss_pred EEecccCCCCcccc---cccccccEEEeecCcchhhhc-cCCCCeeEEEEeccCC
Q 040471 272 DLLLRFCRLPEKVK---ISSNQLKNLHFNSCENLKAID-TDTPNLLSFTFSYDFN 322 (340)
Q Consensus 272 ~L~l~~c~~i~~~~---~~~~~L~~L~l~~c~~l~~~~-~~~p~L~~L~~~~~~~ 322 (340)
+|++++|..-+..+ ..+++|++|++++|.-...+. ...++|++|++.++..
T Consensus 227 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l 281 (768)
T 3rgz_A 227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKF 281 (768)
T ss_dssp EEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEE
T ss_pred EEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCcc
Confidence 99999887533332 236899999999986532221 1568999999988654
No 48
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.11 E-value=1.2e-10 Score=92.26 Aligned_cols=94 Identities=15% Similarity=0.156 Sum_probs=77.8
Q ss_pred cccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEee-ChHHHHHHHhc---CCCCcEEEecccCCCcc
Q 040471 138 VCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYI-NDQMFQKLTNE---CPSLEDFEISACWGLKN 213 (340)
Q Consensus 138 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~---~p~L~~L~l~~c~~~~~ 213 (340)
...+|......-+|++|++++|.+.+........|++|++|+|++|.. +|.++..+... |++|++|+|++|..+++
T Consensus 50 ~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 50 YNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp GGGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred cccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 345665444456799999999988775556667899999999999975 99999999873 78999999999999887
Q ss_pred cc---cccCCCCceEEecccc
Q 040471 214 LC---VSKAHKLKKLAIYTFY 231 (340)
Q Consensus 214 ~~---~~~~~~L~~L~i~~~~ 231 (340)
.+ +..|++|++|++++|.
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCT
T ss_pred HHHHHHhcCCCCCEEECCCCC
Confidence 53 4568999999999997
No 49
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.10 E-value=7.7e-11 Score=101.60 Aligned_cols=195 Identities=18% Similarity=0.164 Sum_probs=123.5
Q ss_pred cCccEEEEEeecCCCCCccccCCc-cccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQ-TIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP 198 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p 198 (340)
+++++|++..+.. ..++. .+..+++|++|+++++.+..........+++|++|+++++.++.-.. ..+..++
T Consensus 28 ~~l~~L~ls~n~l------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~ 100 (276)
T 2z62_A 28 FSTKNLDLSFNPL------RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLS 100 (276)
T ss_dssp TTCCEEECTTCCC------CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCT
T ss_pred CCccEEECCCCcc------cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh-hhhcCCc
Confidence 4678888765543 23333 55668889999999887654222345678899999998887632211 2245688
Q ss_pred CCcEEEecccCC--CcccccccCCCCceEEecccc-cc--cceeeecCcCcceEeccCceeecc---HHHHHHHcCCCcc
Q 040471 199 SLEDFEISACWG--LKNLCVSKAHKLKKLAIYTFY-KD--IGIVEIVVPSLQQQLMLTSVWFMD---EEFDRFISKFPLL 270 (340)
Q Consensus 199 ~L~~L~l~~c~~--~~~~~~~~~~~L~~L~i~~~~-~~--~~~~~~~~p~L~~ll~l~~~~i~~---~~~~~l~~~~~~L 270 (340)
+|++|+++++.. +....+..+++|+.|+++++. .. .......+++|+.+ .+.++.+++ ..+.. +..++.|
T Consensus 101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L-~Ls~N~l~~~~~~~~~~-l~~L~~l 178 (276)
T 2z62_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL-DLSSNKIQSIYCTDLRV-LHQMPLL 178 (276)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE-ECCSSCCCEECGGGGHH-HHTCTTC
T ss_pred cccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE-ECCCCCCCcCCHHHhhh-hhhcccc
Confidence 999999988743 222345677899999998876 12 12222356788887 777766554 23333 3334444
Q ss_pred c-EEecccCCCCccccc---ccccccEEEeecCcch---hhhccCCCCeeEEEEeccCCCC
Q 040471 271 E-DLLLRFCRLPEKVKI---SSNQLKNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNPI 324 (340)
Q Consensus 271 ~-~L~l~~c~~i~~~~~---~~~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~~ 324 (340)
. +|+++++. ++.++. ...+|++|+++++.-- ..+....++|+.|++.++....
T Consensus 179 ~l~L~ls~n~-l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 179 NLSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CEEEECCSSC-CCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred ceeeecCCCc-ccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 4 78888765 443332 2357999999887532 2223456889999999876664
No 50
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.10 E-value=4.5e-10 Score=98.49 Aligned_cols=211 Identities=13% Similarity=0.059 Sum_probs=138.4
Q ss_pred cCccEEEEEeecCCCCCccccCCcc--ccCCCCccEEEeeceeCCCCCCccc--ccCcccceEecceEeeChH--HHH-H
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQT--IFSAKSMATLSLFGCRMEQPSDTTT--IRLDSLKKLTLENVYINDQ--MFQ-K 192 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~--~~~~~~L~~L~L~~~~~~~~~~~~~--~~~~~L~~L~L~~~~~~~~--~l~-~ 192 (340)
..++.+.+..... ....+... ....++|++|++++|.+........ ..+++|++|+++++.++.. .+. .
T Consensus 64 ~~l~~l~l~~~~~----~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 139 (310)
T 4glp_A 64 LRVRRLTVGAAQV----PAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAEL 139 (310)
T ss_dssp CCCCEEEECSCCC----BHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred cceeEEEEeCCcC----CHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHH
Confidence 3567777754433 22222221 2235779999999998754333343 7799999999999998431 111 1
Q ss_pred HHhcCCCCcEEEecccCCCcc--cccccCCCCceEEecccc-cccc-----eeeecCcCcceEeccCceeecc--HHHHH
Q 040471 193 LTNECPSLEDFEISACWGLKN--LCVSKAHKLKKLAIYTFY-KDIG-----IVEIVVPSLQQQLMLTSVWFMD--EEFDR 262 (340)
Q Consensus 193 l~~~~p~L~~L~l~~c~~~~~--~~~~~~~~L~~L~i~~~~-~~~~-----~~~~~~p~L~~ll~l~~~~i~~--~~~~~ 262 (340)
-...+++|++|++++|.-... -.+..+++|++|+++++. .+.. ......|+|+.| .+.++.++. .....
T Consensus 140 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L-~Ls~N~l~~l~~~~~~ 218 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNL-ALRNTGMETPTGVCAA 218 (310)
T ss_dssp HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSC-BCCSSCCCCHHHHHHH
T ss_pred HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEE-ECCCCCCCchHHHHHH
Confidence 224799999999999865222 245568999999999986 2211 111357888888 888888863 23334
Q ss_pred HHcCCCcccEEecccCCCCccc-c---ccc---ccccEEEeecCcchhhhccC-CCCeeEEEEeccCCCC-cceeccccc
Q 040471 263 FISKFPLLEDLLLRFCRLPEKV-K---ISS---NQLKNLHFNSCENLKAIDTD-TPNLLSFTFSYDFNPI-PTIAMNALS 333 (340)
Q Consensus 263 l~~~~~~L~~L~l~~c~~i~~~-~---~~~---~~L~~L~l~~c~~l~~~~~~-~p~L~~L~~~~~~~~~-~~~~~~~~~ 333 (340)
++.++++|++|++++|.. ++. + ..+ ++|++|+++++.- ..+... .++|+.|+++++.... |.. ...++
T Consensus 219 l~~~l~~L~~L~Ls~N~l-~~~~p~~~~~~~~~~~L~~L~Ls~N~l-~~lp~~~~~~L~~L~Ls~N~l~~~~~~-~~l~~ 295 (310)
T 4glp_A 219 LAAAGVQPHSLDLSHNSL-RATVNPSAPRCMWSSALNSLNLSFAGL-EQVPKGLPAKLRVLDLSSNRLNRAPQP-DELPE 295 (310)
T ss_dssp HHHHTCCCSSEECTTSCC-CCCCCSCCSSCCCCTTCCCEECCSSCC-CSCCSCCCSCCSCEECCSCCCCSCCCT-TSCCC
T ss_pred HHhcCCCCCEEECCCCCC-CccchhhHHhccCcCcCCEEECCCCCC-CchhhhhcCCCCEEECCCCcCCCCchh-hhCCC
Confidence 567889999999998764 433 2 123 6999999988754 333322 3799999999987765 432 23345
Q ss_pred ccccc
Q 040471 334 METLF 338 (340)
Q Consensus 334 ~~~l~ 338 (340)
++.|+
T Consensus 296 L~~L~ 300 (310)
T 4glp_A 296 VDNLT 300 (310)
T ss_dssp CSCEE
T ss_pred ccEEE
Confidence 65554
No 51
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.10 E-value=4.5e-10 Score=106.30 Aligned_cols=189 Identities=14% Similarity=0.074 Sum_probs=129.8
Q ss_pred cCccEEEEEeecCCCCCccccCCcccc-CCCCccEEEeeceeCCCCCC---cccccCcccceEecceEeeCh-HHHHHHH
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIF-SAKSMATLSLFGCRMEQPSD---TTTIRLDSLKKLTLENVYIND-QMFQKLT 194 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~-~~l~~l~ 194 (340)
.+++.|++..+.. ..+|..++ .+++|+.|++++|.+....+ .....+++|++|+++++.++. ......+
T Consensus 310 ~~L~~L~l~~n~l------~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 383 (549)
T 2z81_A 310 EKVKRITVENSKV------FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383 (549)
T ss_dssp TTCCEEEEESSCC------CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHG
T ss_pred ccceEEEeccCcc------ccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhh
Confidence 5778888766544 46777664 58899999999987654211 124568999999999998843 3234557
Q ss_pred hcCCCCcEEEecccCCCccc--ccccCCCCceEEecccccccceeeec-CcCcceEeccCceeeccHHHHHHHcCCCccc
Q 040471 195 NECPSLEDFEISACWGLKNL--CVSKAHKLKKLAIYTFYKDIGIVEIV-VPSLQQQLMLTSVWFMDEEFDRFISKFPLLE 271 (340)
Q Consensus 195 ~~~p~L~~L~l~~c~~~~~~--~~~~~~~L~~L~i~~~~~~~~~~~~~-~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~ 271 (340)
..+++|++|++++|. +..+ .+..+++|++|+++++. +..+... .++|+.+ +++++.+++. +.++++|+
T Consensus 384 ~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N~--l~~l~~~~~~~L~~L-~Ls~N~l~~~-----~~~l~~L~ 454 (549)
T 2z81_A 384 LTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTG--IRVVKTCIPQTLEVL-DVSNNNLDSF-----SLFLPRLQ 454 (549)
T ss_dssp GGCTTCCEEECTTCC-CCCCCSCCCCCTTCCEEECTTSC--CSCCCTTSCTTCSEE-ECCSSCCSCC-----CCCCTTCC
T ss_pred hcCCCCCEEECCCCC-CccCChhhcccccccEEECCCCC--cccccchhcCCceEE-ECCCCChhhh-----cccCChhc
Confidence 789999999999883 3322 23456889999999886 2222211 2577777 7777776552 36789999
Q ss_pred EEecccCCCCccccc--ccccccEEEeecCcch---hhhccCCCCeeEEEEeccCCCC
Q 040471 272 DLLLRFCRLPEKVKI--SSNQLKNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNPI 324 (340)
Q Consensus 272 ~L~l~~c~~i~~~~~--~~~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~~ 324 (340)
+|++++|. ++.++. .+++|+.|+++++.-- .......++|+.|++.++....
T Consensus 455 ~L~Ls~N~-l~~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 455 ELYISRNK-LKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp EEECCSSC-CSSCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCC
T ss_pred EEECCCCc-cCcCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccC
Confidence 99999875 444432 3689999999987432 1223456899999999977654
No 52
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.10 E-value=3.6e-10 Score=108.22 Aligned_cols=195 Identities=13% Similarity=0.039 Sum_probs=119.6
Q ss_pred cCccEEEEEeecCCCCCccccCC-ccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILP-QTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP 198 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p 198 (340)
++++.|++..+.. ..++ ..+..+++|++|+|++|.+..........+++|++|+|+++.++. ....++..++
T Consensus 75 ~~L~~L~L~~n~l------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~ 147 (597)
T 3oja_B 75 RQVELLNLNDLQI------EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTP 147 (597)
T ss_dssp CCCSEEECTTSCC------CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCT
T ss_pred CCCcEEECCCCCC------CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-CCHHHhccCC
Confidence 6899999866544 2333 366778999999999998765333345789999999999998741 1123356789
Q ss_pred CCcEEEecccCCCc--ccccccCCCCceEEecccccccceee-ecCcCcceEeccCceeecc--------------HHHH
Q 040471 199 SLEDFEISACWGLK--NLCVSKAHKLKKLAIYTFYKDIGIVE-IVVPSLQQQLMLTSVWFMD--------------EEFD 261 (340)
Q Consensus 199 ~L~~L~l~~c~~~~--~~~~~~~~~L~~L~i~~~~~~~~~~~-~~~p~L~~ll~l~~~~i~~--------------~~~~ 261 (340)
+|++|++++|.-.. .-.+..+++|+.|+++++. +..+. ...|+|+.+ .+.++.++. ..+.
T Consensus 148 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~l~~L~~L-~l~~n~l~~l~~~~~L~~L~ls~n~l~ 224 (597)
T 3oja_B 148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTHVDLSLIPSLFHA-NVSYNLLSTLAIPIAVEELDASHNSIN 224 (597)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC--CSBCCGGGCTTCSEE-ECCSSCCSEEECCTTCSEEECCSSCCC
T ss_pred CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC--CCCcChhhhhhhhhh-hcccCccccccCCchhheeeccCCccc
Confidence 99999999985322 2235678999999999876 11111 134555554 232222211 0000
Q ss_pred HH-HcCCCcccEEecccCCCCccc-ccccccccEEEeecCcch---hhhccCCCCeeEEEEeccCCCC
Q 040471 262 RF-ISKFPLLEDLLLRFCRLPEKV-KISSNQLKNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNPI 324 (340)
Q Consensus 262 ~l-~~~~~~L~~L~l~~c~~i~~~-~~~~~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~~ 324 (340)
.+ ....++|+.|++++|..-+.. ...+++|+.|+++++.-- .......++|+.|++.++....
T Consensus 225 ~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 292 (597)
T 3oja_B 225 VVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 292 (597)
T ss_dssp EEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE
T ss_pred ccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC
Confidence 00 012356777777765432211 112578888888877532 1222356888888888866553
No 53
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.10 E-value=4.4e-10 Score=97.66 Aligned_cols=163 Identities=17% Similarity=0.130 Sum_probs=106.2
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS 199 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 199 (340)
.+++.|++..+.. ..++ .+..+++|+.|++++|.+... +....+++|+.|+++++.++. +.. +..+++
T Consensus 46 ~~L~~L~l~~~~i------~~~~-~~~~l~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~ 113 (291)
T 1h6t_A 46 NSIDQIIANNSDI------KSVQ-GIQYLPNVTKLFLNGNKLTDI--KPLANLKNLGWLFLDENKVKD--LSS-LKDLKK 113 (291)
T ss_dssp HTCCEEECTTSCC------CCCT-TGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC--GGG-GTTCTT
T ss_pred CcccEEEccCCCc------ccCh-hHhcCCCCCEEEccCCccCCC--cccccCCCCCEEECCCCcCCC--Chh-hccCCC
Confidence 5778887765543 2333 356678888888888877652 226678888888888887732 112 567888
Q ss_pred CcEEEecccCCCcccccccCCCCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccC
Q 040471 200 LEDFEISACWGLKNLCVSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFC 278 (340)
Q Consensus 200 L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c 278 (340)
|++|++++|.--..-.+..+++|+.|+++++. ... .....+++|+.| .+.++.+++... +..+++|++|++++|
T Consensus 114 L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L-~L~~N~l~~~~~---l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 114 LKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTL-SLEDNQISDIVP---LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEE-ECCSSCCCCCGG---GTTCTTCCEEECCSS
T ss_pred CCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEE-EccCCccccchh---hcCCCccCEEECCCC
Confidence 88888888743222245567888888888876 222 112246677776 666666655322 667788888888876
Q ss_pred CCCccccc--ccccccEEEeecCc
Q 040471 279 RLPEKVKI--SSNQLKNLHFNSCE 300 (340)
Q Consensus 279 ~~i~~~~~--~~~~L~~L~l~~c~ 300 (340)
. +++++. .+++|+.|+++++.
T Consensus 189 ~-i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 189 H-ISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp C-CCBCGGGTTCTTCSEEEEEEEE
T ss_pred c-CCCChhhccCCCCCEEECcCCc
Confidence 4 444322 25778888887654
No 54
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.10 E-value=5.9e-10 Score=103.14 Aligned_cols=157 Identities=10% Similarity=0.023 Sum_probs=90.8
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS 199 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 199 (340)
.++++|++..+.. ..++ +..+++|++|+++++.+... ....+++|++|+++++.++.-. +..+++
T Consensus 85 ~~L~~L~Ls~N~l------~~~~--~~~l~~L~~L~L~~N~l~~l---~~~~l~~L~~L~l~~N~l~~l~----l~~l~~ 149 (457)
T 3bz5_A 85 TNLTYLACDSNKL------TNLD--VTPLTKLTYLNCDTNKLTKL---DVSQNPLLTYLNCARNTLTEID----VSHNTQ 149 (457)
T ss_dssp TTCSEEECCSSCC------SCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCCEEECTTSCCSCCC----CTTCTT
T ss_pred CCCCEEECcCCCC------ceee--cCCCCcCCEEECCCCcCCee---cCCCCCcCCEEECCCCccceec----cccCCc
Confidence 4667777655543 1222 45567777777777766541 2456677777777777663211 456777
Q ss_pred CcEEEecccCCCcccccccCCCCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccC
Q 040471 200 LEDFEISACWGLKNLCVSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFC 278 (340)
Q Consensus 200 L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c 278 (340)
|++|++++|..+..+.+..+++|+.|+++++. .... ...+++|+.+ .+.++.+++.. +..+++|++|++++|
T Consensus 150 L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L-~l~~N~l~~~~----l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 150 LTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRL-NCDTNNITKLD----LNQNIQLTFLDCSSN 222 (457)
T ss_dssp CCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEE-ECCSSCCSCCC----CTTCTTCSEEECCSS
T ss_pred CCEEECCCCCcccccccccCCcCCEEECCCCccceec--cccCCCCCEE-ECcCCcCCeec----cccCCCCCEEECcCC
Confidence 77777777766655556666777777777665 1211 1235556665 55555444431 445666666666655
Q ss_pred CCCcccccc-cccccEEEeecC
Q 040471 279 RLPEKVKIS-SNQLKNLHFNSC 299 (340)
Q Consensus 279 ~~i~~~~~~-~~~L~~L~l~~c 299 (340)
. ++.++.. +++|+.|+++++
T Consensus 223 ~-l~~ip~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 223 K-LTEIDVTPLTQLTYFDCSVN 243 (457)
T ss_dssp C-CSCCCCTTCTTCSEEECCSS
T ss_pred c-ccccCccccCCCCEEEeeCC
Confidence 4 3333322 456666666654
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.09 E-value=2.7e-10 Score=98.67 Aligned_cols=181 Identities=15% Similarity=0.083 Sum_probs=125.5
Q ss_pred cccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccc---
Q 040471 138 VCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNL--- 214 (340)
Q Consensus 138 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~--- 214 (340)
...+|..+ .++|++|+++++.+..........+++|++|++.++.++.-. ...+..+++|++|+++++..+..+
T Consensus 23 l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~ 99 (285)
T 1ozn_A 23 LQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPA 99 (285)
T ss_dssp CSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred cccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCHH
Confidence 34555433 468999999998875533334568999999999998773211 122467899999999998755443
Q ss_pred ccccCCCCceEEecccc-cccc-eeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCccccc----cc
Q 040471 215 CVSKAHKLKKLAIYTFY-KDIG-IVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKI----SS 288 (340)
Q Consensus 215 ~~~~~~~L~~L~i~~~~-~~~~-~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~----~~ 288 (340)
.+..+++|++|+++++. .... .....+++|+.+ .+.++.++.... ..+.++++|++|++++|. ++.++. .+
T Consensus 100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l 176 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL-YLQDNALQALPD-DTFRDLGNLTHLFLHGNR-ISSVPERAFRGL 176 (285)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE-ECCSSCCCCCCT-TTTTTCTTCCEEECCSSC-CCEECTTTTTTC
T ss_pred HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEE-ECCCCcccccCH-hHhccCCCccEEECCCCc-ccccCHHHhcCc
Confidence 45568999999999887 2221 112357888888 777666553221 235678999999999875 544443 26
Q ss_pred ccccEEEeecCcch---hhhccCCCCeeEEEEeccCCCC
Q 040471 289 NQLKNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNPI 324 (340)
Q Consensus 289 ~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~~ 324 (340)
++|++|+++++.-- .......++|+.|++.++....
T Consensus 177 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 215 (285)
T 1ozn_A 177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred cccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc
Confidence 89999999988642 1222356899999999976654
No 56
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.09 E-value=2.5e-10 Score=98.06 Aligned_cols=59 Identities=15% Similarity=0.111 Sum_probs=29.7
Q ss_pred HcCCCcccEEecccCCCCccccc----ccccccEEEeecCcch---hhhccCCCCeeEEEEeccCCC
Q 040471 264 ISKFPLLEDLLLRFCRLPEKVKI----SSNQLKNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNP 323 (340)
Q Consensus 264 ~~~~~~L~~L~l~~c~~i~~~~~----~~~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~ 323 (340)
+..+++|++|++++|. ++.++. .+++|++|+++++.-- .......++|+.|++.++...
T Consensus 153 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 153 FDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 3455666666666553 332222 2456666666665321 111223466666666665543
No 57
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.09 E-value=1.5e-10 Score=111.02 Aligned_cols=196 Identities=16% Similarity=0.097 Sum_probs=94.3
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCc-ccccCcccceEecceEeeChHH-HHHHHhcC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDT-TTIRLDSLKKLTLENVYINDQM-FQKLTNEC 197 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~-l~~l~~~~ 197 (340)
+++++|++..+.. ....|..+..+++|+.|++++|.+...... ....+++|++|+++++.++... ....+..+
T Consensus 301 ~~L~~L~l~~n~l-----~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 375 (606)
T 3t6q_A 301 STLKKLVLSANKF-----ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375 (606)
T ss_dssp TTCCEEECTTCCC-----SBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTC
T ss_pred ccCCEEECccCCc-----CcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccC
Confidence 5677777765543 122234555677777777777755422212 2456677777777776652211 11224556
Q ss_pred CCCcEEEecccCCCc--ccccccCCCCceEEecccc-cccc--eeeecCcCcceEeccCceeeccHHHHHHHcCCCcccE
Q 040471 198 PSLEDFEISACWGLK--NLCVSKAHKLKKLAIYTFY-KDIG--IVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLED 272 (340)
Q Consensus 198 p~L~~L~l~~c~~~~--~~~~~~~~~L~~L~i~~~~-~~~~--~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~ 272 (340)
++|++|++++|.... ...+..+++|+.|+++++. .... .....+++|+.+ .+.++.++.... ..+.++++|++
T Consensus 376 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~-~~~~~l~~L~~ 453 (606)
T 3t6q_A 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL-NLSHSLLDISSE-QLFDGLPALQH 453 (606)
T ss_dssp TTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE-ECTTCCCBTTCT-TTTTTCTTCCE
T ss_pred CCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE-ECCCCccCCcCH-HHHhCCCCCCE
Confidence 777777777664211 1133445666666666654 1111 111234555555 444444332211 12344555555
Q ss_pred EecccCCCCcc------cccccccccEEEeecCcchh---hhccCCCCeeEEEEeccCC
Q 040471 273 LLLRFCRLPEK------VKISSNQLKNLHFNSCENLK---AIDTDTPNLLSFTFSYDFN 322 (340)
Q Consensus 273 L~l~~c~~i~~------~~~~~~~L~~L~l~~c~~l~---~~~~~~p~L~~L~~~~~~~ 322 (340)
|++++|..-+. ....+++|++|++++|.-.. ......++|+.|+++++..
T Consensus 454 L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 512 (606)
T 3t6q_A 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512 (606)
T ss_dssp EECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCcc
Confidence 55555442110 01113555555555553211 1112335555555555433
No 58
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.09 E-value=2.5e-10 Score=109.51 Aligned_cols=174 Identities=16% Similarity=0.089 Sum_probs=82.3
Q ss_pred CCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeC-hHHHHHHHhcCCCCcEEEecccCCCcc-cccccCCCCce
Q 040471 147 SAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYIN-DQMFQKLTNECPSLEDFEISACWGLKN-LCVSKAHKLKK 224 (340)
Q Consensus 147 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~l~~l~~~~p~L~~L~l~~c~~~~~-~~~~~~~~L~~ 224 (340)
.+++|+.|+++++..... .....+++|++|+++++.++ ...+......+++|++|++++|..... -.+..+++|+.
T Consensus 326 ~l~~L~~L~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~ 403 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSIS--FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQH 403 (606)
T ss_dssp CCSSCCEEEEESCSSCEE--CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCE
T ss_pred CCCccceeeccCCcCccc--hhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCe
Confidence 444455555554421110 12235666777777666552 111122345567777777766532100 11223344444
Q ss_pred EEecccc-ccc--------------------------ceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEeccc
Q 040471 225 LAIYTFY-KDI--------------------------GIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRF 277 (340)
Q Consensus 225 L~i~~~~-~~~--------------------------~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~ 277 (340)
|+++++. ... ......+++|+.+ .+.++.+++......+.++++|++|++++
T Consensus 404 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 482 (606)
T 3vq2_A 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL-KMAGNSFKDNTLSNVFANTTNLTFLDLSK 482 (606)
T ss_dssp EECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE-ECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred eECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEE-ECCCCcCCCcchHHhhccCCCCCEEECCC
Confidence 4444433 000 0001133445554 55555555433333455667777777776
Q ss_pred CCCCcccc---cccccccEEEeecCcchh---hhccCCCCeeEEEEeccCCC
Q 040471 278 CRLPEKVK---ISSNQLKNLHFNSCENLK---AIDTDTPNLLSFTFSYDFNP 323 (340)
Q Consensus 278 c~~i~~~~---~~~~~L~~L~l~~c~~l~---~~~~~~p~L~~L~~~~~~~~ 323 (340)
|...+..+ ..+++|++|++++|.-.. ......++|+.|++.++...
T Consensus 483 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred CcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 64322111 124677777777664321 11233466777777665554
No 59
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.09 E-value=5.2e-10 Score=103.37 Aligned_cols=105 Identities=15% Similarity=0.119 Sum_probs=55.4
Q ss_pred ccCCCCceEEecccc-cccce-eeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCcccc----ccccc
Q 040471 217 SKAHKLKKLAIYTFY-KDIGI-VEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVK----ISSNQ 290 (340)
Q Consensus 217 ~~~~~L~~L~i~~~~-~~~~~-~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~----~~~~~ 290 (340)
..+++|+.|+++++. ..... ....+++|+.| .+.++.+++.. ...+.++++|++|++++|.. +.+. ..+++
T Consensus 296 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~ 372 (455)
T 3v47_A 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL-NLSQNFLGSID-SRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPN 372 (455)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE-ECCSSCCCEEC-GGGGTTCTTCCEEECCSSCC-CEECTTTTTTCTT
T ss_pred ccCCCCCEEECCCCcccccChhHhcCcccCCEE-ECCCCccCCcC-hhHhcCcccCCEEECCCCcc-cccChhhcccccc
Confidence 345666666666654 11111 11135566666 55555543321 12245677777777776643 3331 12567
Q ss_pred ccEEEeecCcch---hhhccCCCCeeEEEEeccCCCC
Q 040471 291 LKNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNPI 324 (340)
Q Consensus 291 L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~~ 324 (340)
|++|+++++.-- .......++|+.|++.++....
T Consensus 373 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 373 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 777777765421 1122345777777777765544
No 60
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.08 E-value=4.9e-10 Score=110.96 Aligned_cols=175 Identities=13% Similarity=0.081 Sum_probs=113.9
Q ss_pred cCccEEEEEeecCCCC-----Ccc-------ccCCcccc--CCCCccEEEeeceeCCCCCCcccccCcccceEecceEe-
Q 040471 120 NGIKDLVLMVHNMTQE-----DTV-------CILPQTIF--SAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVY- 184 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~-----~~~-------~~l~~~~~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~- 184 (340)
.+++.|++..+..... ... ..+|..+. .+++|+.|+|++|.+....+.....+++|+.|+++++.
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ 527 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence 6899999987765100 000 02888877 89999999999998765555667889999999999997
Q ss_pred eCh----HHHHHHH---hcCCCCcEEEecccCCCccc----ccccCCCCceEEecccc-cccceeeecCcCcceEeccCc
Q 040471 185 IND----QMFQKLT---NECPSLEDFEISACWGLKNL----CVSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTS 252 (340)
Q Consensus 185 ~~~----~~l~~l~---~~~p~L~~L~l~~c~~~~~~----~~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~ 252 (340)
++. ..+..+. ..+|+|+.|++++|.-- .+ .+..+++|+.|+++++. ..+. ....+++|+.| .+.+
T Consensus 528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L-~Ls~ 604 (876)
T 4ecn_A 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDL-KLDY 604 (876)
T ss_dssp SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEE-ECCS
T ss_pred cccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEE-ECcC
Confidence 554 2233322 45679999999988543 32 35567899999999886 2122 11245666666 6666
Q ss_pred eeeccHHHHHHHcCCCc-ccEEecccCCCCcccccc-----cccccEEEeecCc
Q 040471 253 VWFMDEEFDRFISKFPL-LEDLLLRFCRLPEKVKIS-----SNQLKNLHFNSCE 300 (340)
Q Consensus 253 ~~i~~~~~~~l~~~~~~-L~~L~l~~c~~i~~~~~~-----~~~L~~L~l~~c~ 300 (340)
+.++ .+...+..+++ |++|++++|. ++.++.. .++|+.|++++|.
T Consensus 605 N~l~--~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 605 NQIE--EIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNK 655 (876)
T ss_dssp SCCS--CCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSC
T ss_pred Cccc--cchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCc
Confidence 6655 22222455677 8888887765 3333322 1236666666553
No 61
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.07 E-value=6.8e-11 Score=112.43 Aligned_cols=175 Identities=16% Similarity=0.051 Sum_probs=121.3
Q ss_pred cCCCCccEEEeeceeCCCCC--CcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcc---cccccCC
Q 040471 146 FSAKSMATLSLFGCRMEQPS--DTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKN---LCVSKAH 220 (340)
Q Consensus 146 ~~~~~L~~L~L~~~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~---~~~~~~~ 220 (340)
..+++|+.|+++++.+.... ......+++|++|++.++.+..-... +..+++|++|++++|..... ..+..++
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 421 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN--FLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE--EETCTTCCEEECTTSEEESCTTSCTTTTCT
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc--ccccCCCCEEEccCCccccccchhhhhcCC
Confidence 45678888888887654311 12345789999999999876221111 56799999999999853221 2355789
Q ss_pred CCceEEecccc-cc-cceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCccc-cc---ccccccEE
Q 040471 221 KLKKLAIYTFY-KD-IGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKV-KI---SSNQLKNL 294 (340)
Q Consensus 221 ~L~~L~i~~~~-~~-~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~-~~---~~~~L~~L 294 (340)
+|+.|+++++. .. .......+++|+.+ .+.++.+++..+...+..+++|++|++++|.. +.. +. .+++|++|
T Consensus 422 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVL-KMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEE-ECTTCEEGGGEECSCCTTCTTCCEEECTTSCC-CEECTTTTTTCTTCCEE
T ss_pred CCCEEeCcCCcccccchhhhhcCCcCcEE-ECcCCcCccccchhhhhcccCCCEEECCCCcc-ccCChhhhhcccCCCEE
Confidence 99999999886 11 11222357888888 88888876544445577899999999998864 333 22 36899999
Q ss_pred EeecCcch---hhhccCCCCeeEEEEeccCCCC
Q 040471 295 HFNSCENL---KAIDTDTPNLLSFTFSYDFNPI 324 (340)
Q Consensus 295 ~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~~ 324 (340)
++++|.-- .......++|+.|++.++....
T Consensus 500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred eCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 99988532 1223456999999999977654
No 62
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.07 E-value=8.4e-10 Score=95.88 Aligned_cols=166 Identities=17% Similarity=0.093 Sum_probs=122.2
Q ss_pred cCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcccccccCCCCceE
Q 040471 146 FSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKL 225 (340)
Q Consensus 146 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~~L~~L 225 (340)
..+++|+.|++++|.+... +....+++|++|+++++.++.-. . +..+++|+.|+++++.--..-.+..+++|+.|
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L 117 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 117 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEE
T ss_pred hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCcCCCChhhccCCCCCEE
Confidence 3478899999999987652 34677999999999999883221 1 67899999999999854332246678999999
Q ss_pred Eecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCcccc--cccccccEEEeecCcc-
Q 040471 226 AIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVK--ISSNQLKNLHFNSCEN- 301 (340)
Q Consensus 226 ~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~--~~~~~L~~L~l~~c~~- 301 (340)
+++++. .... ....+++|+.| .+.++.+++- ..+..+++|++|++++|. ++++. ..+++|+.|+++++.-
T Consensus 118 ~L~~n~i~~~~-~l~~l~~L~~L-~l~~n~l~~~---~~l~~l~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 118 SLEHNGISDIN-GLVHLPQLESL-YLGNNKITDI---TVLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp ECTTSCCCCCG-GGGGCTTCCEE-ECCSSCCCCC---GGGGGCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCCCh-hhcCCCCCCEE-EccCCcCCcc---hhhccCCCCCEEEccCCc-cccchhhcCCCccCEEECCCCcCC
Confidence 999987 2221 12357888888 7777777654 346789999999999875 44332 2368999999998743
Q ss_pred -hhhhccCCCCeeEEEEeccCCC
Q 040471 302 -LKAIDTDTPNLLSFTFSYDFNP 323 (340)
Q Consensus 302 -l~~~~~~~p~L~~L~~~~~~~~ 323 (340)
+.. ....++|+.|++.++...
T Consensus 192 ~l~~-l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 192 DLRA-LAGLKNLDVLELFSQECL 213 (291)
T ss_dssp BCGG-GTTCTTCSEEEEEEEEEE
T ss_pred CChh-hccCCCCCEEECcCCccc
Confidence 122 345699999999986543
No 63
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.06 E-value=1.5e-10 Score=104.77 Aligned_cols=212 Identities=12% Similarity=0.065 Sum_probs=143.7
Q ss_pred hHHHHHHHHHH-cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCC---CCccc-------ccCcccce
Q 040471 109 LLDKWIGLAVD-NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQP---SDTTT-------IRLDSLKK 177 (340)
Q Consensus 109 ~l~~~l~~~~~-~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~---~~~~~-------~~~~~L~~ 177 (340)
.+..+...... +++++|++..+... ......++..+..+++|++|+|++|.+..- .+... ..+++|++
T Consensus 20 ~~~~l~~~l~~~~~L~~L~L~~n~i~-~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~ 98 (386)
T 2ca6_A 20 DEKSVFAVLLEDDSVKEIVLSGNTIG-TEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT 98 (386)
T ss_dssp HHHTTSHHHHHCSCCCEEECTTSEEC-HHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCC-HHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccE
Confidence 44444444333 78999999665431 002233455566799999999999865421 11111 47899999
Q ss_pred EecceEeeChH---HHHHHHhcCCCCcEEEecccCCCccc---c----cccC---------CCCceEEecccccc---cc
Q 040471 178 LTLENVYINDQ---MFQKLTNECPSLEDFEISACWGLKNL---C----VSKA---------HKLKKLAIYTFYKD---IG 235 (340)
Q Consensus 178 L~L~~~~~~~~---~l~~l~~~~p~L~~L~l~~c~~~~~~---~----~~~~---------~~L~~L~i~~~~~~---~~ 235 (340)
|+|+++.+++. .+...+..+++|++|++++|.- ... . +..+ ++|++|+++++.-. ..
T Consensus 99 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 177 (386)
T 2ca6_A 99 VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177 (386)
T ss_dssp EECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH
T ss_pred EECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC-CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH
Confidence 99999998554 3444567899999999999854 211 1 2223 89999999988722 22
Q ss_pred ee---eecCcCcceEeccCceeeccHHHHH----HHcCCCcccEEecccCCCCc-----ccc---cccccccEEEeecCc
Q 040471 236 IV---EIVVPSLQQQLMLTSVWFMDEEFDR----FISKFPLLEDLLLRFCRLPE-----KVK---ISSNQLKNLHFNSCE 300 (340)
Q Consensus 236 ~~---~~~~p~L~~ll~l~~~~i~~~~~~~----l~~~~~~L~~L~l~~c~~i~-----~~~---~~~~~L~~L~l~~c~ 300 (340)
.+ ...+++|+.| .+.++.+++.++.. .+.++++|++|++++|. ++ .++ ..+++|++|++++|.
T Consensus 178 ~l~~~l~~~~~L~~L-~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 178 EWAKTFQSHRLLHTV-KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp HHHHHHHHCTTCCEE-ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred HHHHHHHhCCCcCEE-ECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 11 1257889998 88888998776444 45689999999999887 42 222 236899999999986
Q ss_pred chh----hhc-----cCCCCeeEEEEeccCCCC
Q 040471 301 NLK----AID-----TDTPNLLSFTFSYDFNPI 324 (340)
Q Consensus 301 ~l~----~~~-----~~~p~L~~L~~~~~~~~~ 324 (340)
--. .+. ...++|+.|++.++....
T Consensus 256 i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred CchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 421 111 127999999999976653
No 64
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.06 E-value=8.8e-10 Score=101.96 Aligned_cols=181 Identities=18% Similarity=0.145 Sum_probs=119.4
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS 199 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 199 (340)
+++++|++..+.. ..+| +..+++|++|++++|.+... ....+++|++|+++++.++.-. +..+++
T Consensus 64 ~~L~~L~Ls~n~l------~~~~--~~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~L~L~~N~l~~l~----~~~l~~ 128 (457)
T 3bz5_A 64 TGLTKLICTSNNI------TTLD--LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKLD----VSQNPL 128 (457)
T ss_dssp TTCSEEECCSSCC------SCCC--CTTCTTCSEEECCSSCCSCC---CCTTCTTCCEEECCSSCCSCCC----CTTCTT
T ss_pred CCCCEEEccCCcC------CeEc--cccCCCCCEEECcCCCCcee---ecCCCCcCCEEECCCCcCCeec----CCCCCc
Confidence 5777777765544 2233 55677788888887776542 2456788888888877763311 566788
Q ss_pred CcEEEecccCCCcccccccCCCCceEEecccccccceeee-cCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccC
Q 040471 200 LEDFEISACWGLKNLCVSKAHKLKKLAIYTFYKDIGIVEI-VVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFC 278 (340)
Q Consensus 200 L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~-~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c 278 (340)
|++|+++++. +..+.+..+++|+.|+++++. ....+.+ .+++|+.+ .+.++.+++-. +..+++|++|++++|
T Consensus 129 L~~L~l~~N~-l~~l~l~~l~~L~~L~l~~n~-~~~~~~~~~l~~L~~L-~ls~n~l~~l~----l~~l~~L~~L~l~~N 201 (457)
T 3bz5_A 129 LTYLNCARNT-LTEIDVSHNTQLTELDCHLNK-KITKLDVTPQTQLTTL-DCSFNKITELD----VSQNKLLNRLNCDTN 201 (457)
T ss_dssp CCEEECTTSC-CSCCCCTTCTTCCEEECTTCS-CCCCCCCTTCTTCCEE-ECCSSCCCCCC----CTTCTTCCEEECCSS
T ss_pred CCEEECCCCc-cceeccccCCcCCEEECCCCC-cccccccccCCcCCEE-ECCCCccceec----cccCCCCCEEECcCC
Confidence 8888888763 333456667888888888774 1222222 46777777 77777666532 567899999999976
Q ss_pred CCCccccc-ccccccEEEeecCcchhhhc-cCCCCeeEEEEeccCCCC
Q 040471 279 RLPEKVKI-SSNQLKNLHFNSCENLKAID-TDTPNLLSFTFSYDFNPI 324 (340)
Q Consensus 279 ~~i~~~~~-~~~~L~~L~l~~c~~l~~~~-~~~p~L~~L~~~~~~~~~ 324 (340)
. ++.+.. .+++|+.|+++++.- ..+. ...++|+.|++.++....
T Consensus 202 ~-l~~~~l~~l~~L~~L~Ls~N~l-~~ip~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 202 N-ITKLDLNQNIQLTFLDCSSNKL-TEIDVTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp C-CSCCCCTTCTTCSEEECCSSCC-SCCCCTTCTTCSEEECCSSCCSC
T ss_pred c-CCeeccccCCCCCEEECcCCcc-cccCccccCCCCEEEeeCCcCCC
Confidence 5 444433 368999999988753 2232 345888889888866543
No 65
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.06 E-value=3.1e-10 Score=108.83 Aligned_cols=147 Identities=16% Similarity=0.038 Sum_probs=85.5
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS 199 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 199 (340)
.+++.|++..+.. ..+| .+..+++|+.|++++|.+.. . +.. .+++|++|++.++...... -...+|+
T Consensus 285 ~~L~~L~l~~~~~------~~l~-~l~~~~~L~~L~l~~n~l~~-l-p~~-~l~~L~~L~l~~n~~~~~~---~~~~l~~ 351 (606)
T 3vq2_A 285 ANVSAMSLAGVSI------KYLE-DVPKHFKWQSLSIIRCQLKQ-F-PTL-DLPFLKSLTLTMNKGSISF---KKVALPS 351 (606)
T ss_dssp TTCSEEEEESCCC------CCCC-CCCTTCCCSEEEEESCCCSS-C-CCC-CCSSCCEEEEESCSSCEEC---CCCCCTT
T ss_pred CCCCEEEecCccc------hhhh-hccccccCCEEEcccccCcc-c-ccC-CCCccceeeccCCcCccch---hhccCCC
Confidence 5667777655543 3344 55567778888888877632 2 233 7788888888777431111 2346788
Q ss_pred CcEEEecccCCCc----ccccccCCCCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEe
Q 040471 200 LEDFEISACWGLK----NLCVSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLL 274 (340)
Q Consensus 200 L~~L~l~~c~~~~----~~~~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~ 274 (340)
|++|++++|.--. ...+..+++|+.|+++++. .........+++|+.+ .+.++.+.+......+.++++|++|+
T Consensus 352 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~~l~~L~~L~ 430 (606)
T 3vq2_A 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHL-DFQHSTLKRVTEFSAFLSLEKLLYLD 430 (606)
T ss_dssp CCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEE-ECTTSEEESTTTTTTTTTCTTCCEEE
T ss_pred CCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCee-ECCCCccCCccChhhhhccccCCEEE
Confidence 8888888774321 1233457888888888776 2222122246677776 66665554433222345566666666
Q ss_pred cccCCC
Q 040471 275 LRFCRL 280 (340)
Q Consensus 275 l~~c~~ 280 (340)
+++|..
T Consensus 431 l~~n~l 436 (606)
T 3vq2_A 431 ISYTNT 436 (606)
T ss_dssp CTTSCC
T ss_pred CcCCCC
Confidence 665543
No 66
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.05 E-value=3.1e-09 Score=99.87 Aligned_cols=218 Identities=14% Similarity=0.083 Sum_probs=132.9
Q ss_pred cccceEEEEEeccCcCCChhhHHHHHHHHHHcCccEEEEEeecCCCCCccccCCccc-----cCCCC-------------
Q 040471 89 FRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKDLVLMVHNMTQEDTVCILPQTI-----FSAKS------------- 150 (340)
Q Consensus 89 ~~l~~l~l~~~~~~~~~~~~~l~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~-----~~~~~------------- 150 (340)
..++.+.+.... .....+..+.......++++|++..+.. ...+|..+ ..+++
T Consensus 220 ~~L~~L~l~~~~----l~~~~~~~~~~~~~~~~L~~L~l~~n~l-----~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~ 290 (520)
T 2z7x_B 220 PKLSNLTLNNIE----TTWNSFIRILQLVWHTTVWYFSISNVKL-----QGQLDFRDFDYSGTSLKALSIHQVVSDVFGF 290 (520)
T ss_dssp TTCCEEEEEEEE----EEHHHHHHHHHHHHTSSCSEEEEEEEEE-----ESCCCCCCCCCCSCCCCEEEEEEEEECCCCS
T ss_pred cchhhccccccc----cCHHHHHHHHHHhhhCcccEEEeecccc-----cCccccchhhcccccCceeEeccccccceec
Confidence 567777776432 1222344444444456899999977653 11344444 33344
Q ss_pred -------------ccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCc--cc-
Q 040471 151 -------------MATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLK--NL- 214 (340)
Q Consensus 151 -------------L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~--~~- 214 (340)
|+.|+++++.+.... ....+++|++|+++++.+++.... .+..+++|++|++++|.--. .+
T Consensus 291 p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~ 367 (520)
T 2z7x_B 291 PQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFE-NCGHLTELETLILQMNQLKELSKIA 367 (520)
T ss_dssp CTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTT-TCCCCSSCCEEECCSSCCCBHHHHH
T ss_pred chhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhh-hhccCCCCCEEEccCCccCccccch
Confidence 444444444432211 115778899999988887542222 23678899999998875432 21
Q ss_pred -ccccCCCCceEEecccc-cc-cce-eeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCccccc---c
Q 040471 215 -CVSKAHKLKKLAIYTFY-KD-IGI-VEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKI---S 287 (340)
Q Consensus 215 -~~~~~~~L~~L~i~~~~-~~-~~~-~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~---~ 287 (340)
.+..+++|+.|+++++. .. ... .....++|+.+ .+.++.+++.....+ .++|++|++++|. ++.++. .
T Consensus 368 ~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~l---~~~L~~L~Ls~N~-l~~ip~~~~~ 442 (520)
T 2z7x_B 368 EMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL-NMSSNILTDTIFRCL---PPRIKVLDLHSNK-IKSIPKQVVK 442 (520)
T ss_dssp HHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEE-ECCSSCCCGGGGGSC---CTTCCEEECCSSC-CCCCCGGGGG
T ss_pred HHHhhCCCCCEEECCCCcCCcccccchhccCccCCEE-ECcCCCCCcchhhhh---cccCCEEECCCCc-ccccchhhhc
Confidence 24567889999998876 21 221 22346778887 777777765433221 1789999999875 444433 4
Q ss_pred cccccEEEeecCcchhhhc----cCCCCeeEEEEeccCCCC
Q 040471 288 SNQLKNLHFNSCENLKAID----TDTPNLLSFTFSYDFNPI 324 (340)
Q Consensus 288 ~~~L~~L~l~~c~~l~~~~----~~~p~L~~L~~~~~~~~~ 324 (340)
+++|++|++++|.- ..+. ...++|+.|++.++...+
T Consensus 443 l~~L~~L~L~~N~l-~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 443 LEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp CTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCCEEECCCCcC-CccCHHHhccCCcccEEECcCCCCcc
Confidence 68899999988743 2332 345889999999877654
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.04 E-value=5.5e-10 Score=95.93 Aligned_cols=171 Identities=15% Similarity=0.081 Sum_probs=109.9
Q ss_pred cCccEEEEEeecCCCCCccccCCc-cccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQ-TIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP 198 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p 198 (340)
.++++|++..+.. ..++. .+..+++|++|+++++.+..........+++|++|++.++.++.-. ...+..++
T Consensus 37 ~~l~~L~l~~n~l------~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~ 109 (270)
T 2o6q_A 37 ADTKKLDLQSNKL------SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP-IGVFDQLV 109 (270)
T ss_dssp TTCSEEECCSSCC------SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCC-TTTTTTCS
T ss_pred CCCCEEECcCCCC------CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCC-HhHccccc
Confidence 3678888765544 34443 4566888999999888765422223456888999999888763211 12346688
Q ss_pred CCcEEEecccCCC--cccccccCCCCceEEecccc-ccccee-eecCcCcceEeccCceeeccHHHHHHHcCCCcccEEe
Q 040471 199 SLEDFEISACWGL--KNLCVSKAHKLKKLAIYTFY-KDIGIV-EIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLL 274 (340)
Q Consensus 199 ~L~~L~l~~c~~~--~~~~~~~~~~L~~L~i~~~~-~~~~~~-~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~ 274 (340)
+|++|+++++.-- ..-.+..+++|+.|+++++. .....- ...+++|+.| .+.++.++.-.. ..+.++++|++|+
T Consensus 110 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L-~L~~n~l~~~~~-~~~~~l~~L~~L~ 187 (270)
T 2o6q_A 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL-RLYNNQLKRVPE-GAFDKLTELKTLK 187 (270)
T ss_dssp SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-ECCSSCCSCCCT-TTTTTCTTCCEEE
T ss_pred CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccccee-EecCCcCcEeCh-hHhccCCCcCEEE
Confidence 8999999887432 12234567889999998876 211111 1246778877 666665543221 2246789999999
Q ss_pred cccCCCCccccc----ccccccEEEeecCc
Q 040471 275 LRFCRLPEKVKI----SSNQLKNLHFNSCE 300 (340)
Q Consensus 275 l~~c~~i~~~~~----~~~~L~~L~l~~c~ 300 (340)
+++|. ++.++. .+++|+.|++.+++
T Consensus 188 L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 188 LDNNQ-LKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCc-CCcCCHHHhccccCCCEEEecCCC
Confidence 99875 444443 26899999998754
No 68
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.03 E-value=5.4e-10 Score=91.24 Aligned_cols=145 Identities=16% Similarity=0.118 Sum_probs=90.1
Q ss_pred HcCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471 119 DNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP 198 (340)
Q Consensus 119 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p 198 (340)
..++++|++..+.. ..+| .+..+++|++|++++|.+.. .+....+++|++|+++++.++...... +..++
T Consensus 43 l~~L~~L~l~~n~i------~~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~ 112 (197)
T 4ezg_A 43 MNSLTYITLANINV------TDLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPN-LSGLT 112 (197)
T ss_dssp HHTCCEEEEESSCC------SCCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCC-CTTCT
T ss_pred cCCccEEeccCCCc------cChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChh-hcCCC
Confidence 35788888876554 3455 46677888888888885543 234566888888888887775433333 45688
Q ss_pred CCcEEEecccCCCc--ccccccCCCCceEEecccccccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecc
Q 040471 199 SLEDFEISACWGLK--NLCVSKAHKLKKLAIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLR 276 (340)
Q Consensus 199 ~L~~L~l~~c~~~~--~~~~~~~~~L~~L~i~~~~~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~ 276 (340)
+|+.|++++|.--. .-.+..+++|+.|++++|. .+... ..+.++++|++|+++
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~-----------------~i~~~--------~~l~~l~~L~~L~l~ 167 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG-----------------AITDI--------MPLKTLPELKSLNIQ 167 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT-----------------BCCCC--------GGGGGCSSCCEEECT
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC-----------------Ccccc--------HhhcCCCCCCEEECC
Confidence 88888888875432 1234567888888888764 01110 013456667777776
Q ss_pred cCCCCcccc--cccccccEEEeecC
Q 040471 277 FCRLPEKVK--ISSNQLKNLHFNSC 299 (340)
Q Consensus 277 ~c~~i~~~~--~~~~~L~~L~l~~c 299 (340)
+|. ++++. ..+++|++|++.++
T Consensus 168 ~n~-i~~~~~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 168 FDG-VHDYRGIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp TBC-CCCCTTGGGCSSCCEEEECBC
T ss_pred CCC-CcChHHhccCCCCCEEEeeCc
Confidence 654 33332 12466777766654
No 69
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.02 E-value=7.2e-10 Score=106.92 Aligned_cols=147 Identities=14% Similarity=0.073 Sum_probs=77.7
Q ss_pred cCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccccc---c-------cCCCCceEEecccc-cccceeee
Q 040471 171 RLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCV---S-------KAHKLKKLAIYTFY-KDIGIVEI 239 (340)
Q Consensus 171 ~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~---~-------~~~~L~~L~i~~~~-~~~~~~~~ 239 (340)
.+++|++|+++++.++. -...+...+++|++|++++|.-. .+.. . .+++|+.|+++++. ..+.....
T Consensus 431 ~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 508 (636)
T 4eco_A 431 KGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR 508 (636)
T ss_dssp CCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGS
T ss_pred cCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhh
Confidence 34466666666665531 11233445677777777765332 2211 1 11267777777665 21111112
Q ss_pred --cCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCC------CCccccc---ccccccEEEeecCcchhhhcc-
Q 040471 240 --VVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCR------LPEKVKI---SSNQLKNLHFNSCENLKAIDT- 307 (340)
Q Consensus 240 --~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~------~i~~~~~---~~~~L~~L~l~~c~~l~~~~~- 307 (340)
..++|+.| .+.++.+++ +..-+.++++|++|++++|. ..+.++. .+++|++|++++|.- ..+..
T Consensus 509 ~~~l~~L~~L-~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~ 584 (636)
T 4eco_A 509 ATTLPYLVGI-DLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK 584 (636)
T ss_dssp TTTCTTCCEE-ECCSSCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred hccCCCcCEE-ECCCCCCCC--cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh
Confidence 55666666 666666554 22234457777777775432 2222222 256777777777654 33332
Q ss_pred CCCCeeEEEEeccCCC
Q 040471 308 DTPNLLSFTFSYDFNP 323 (340)
Q Consensus 308 ~~p~L~~L~~~~~~~~ 323 (340)
..++|+.|+++++...
T Consensus 585 ~~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 585 ITPNISVLDIKDNPNI 600 (636)
T ss_dssp CCTTCCEEECCSCTTC
T ss_pred HhCcCCEEECcCCCCc
Confidence 2277888888776554
No 70
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.02 E-value=8.4e-10 Score=105.38 Aligned_cols=165 Identities=17% Similarity=0.107 Sum_probs=117.6
Q ss_pred HcCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471 119 DNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP 198 (340)
Q Consensus 119 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p 198 (340)
..+|+.|++..+.. ..++ .+..+++|+.|+|++|.+... +....+++|+.|+|+++.+..- . .+..++
T Consensus 42 L~~L~~L~l~~n~i------~~l~-~l~~l~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~ 109 (605)
T 1m9s_A 42 LNSIDQIIANNSDI------KSVQ-GIQYLPNVTKLFLNGNKLTDI--KPLTNLKNLGWLFLDENKIKDL--S-SLKDLK 109 (605)
T ss_dssp HTTCCCCBCTTCCC------CCCT-TGGGCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--T-TSTTCT
T ss_pred CCCCCEEECcCCCC------CCCh-HHccCCCCCEEEeeCCCCCCC--hhhccCCCCCEEECcCCCCCCC--h-hhccCC
Confidence 36788888865544 3344 467789999999999987652 2367899999999999988321 1 256789
Q ss_pred CCcEEEecccCCCcccccccCCCCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEeccc
Q 040471 199 SLEDFEISACWGLKNLCVSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRF 277 (340)
Q Consensus 199 ~L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~ 277 (340)
+|+.|++++|..-..-.+..+++|+.|+++++. ... .....+++|+.| .+.++.+++... +..+++|++|++++
T Consensus 110 ~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L-~Ls~N~l~~~~~---l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 110 KLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTL-SLEDNQISDIVP---LAGLTKLQNLYLSK 184 (605)
T ss_dssp TCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEE-ECCSSCCCCCGG---GTTCTTCCEEECCS
T ss_pred CCCEEEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEE-ECcCCcCCCchh---hccCCCCCEEECcC
Confidence 999999999854332346678999999999887 222 222256778887 777777665432 67889999999987
Q ss_pred CCCCccccc--ccccccEEEeecCcc
Q 040471 278 CRLPEKVKI--SSNQLKNLHFNSCEN 301 (340)
Q Consensus 278 c~~i~~~~~--~~~~L~~L~l~~c~~ 301 (340)
|. +++++. .+++|+.|++++|.-
T Consensus 185 N~-i~~l~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 185 NH-ISDLRALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp SC-CCBCGGGTTCTTCSEEECCSEEE
T ss_pred CC-CCCChHHccCCCCCEEEccCCcC
Confidence 75 444322 267888888887654
No 71
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.02 E-value=7.1e-10 Score=98.10 Aligned_cols=192 Identities=11% Similarity=0.049 Sum_probs=130.7
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeCh-HHHHHHHhcCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYIND-QMFQKLTNECP 198 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~~p 198 (340)
+++++|++..+.. ..+|..++ ++|++|+++++.+..........+++|+.|++.++.+.. ......+..++
T Consensus 100 ~~L~~L~Ls~n~l------~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 171 (330)
T 1xku_A 100 VKLERLYLSKNQL------KELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171 (330)
T ss_dssp TTCCEEECCSSCC------SBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT
T ss_pred CCCCEEECCCCcC------CccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCC
Confidence 6899999976654 35665554 789999999988765333345679999999999988742 22233467899
Q ss_pred CCcEEEecccCCCcccccccCCCCceEEecccc-cccc-eeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecc
Q 040471 199 SLEDFEISACWGLKNLCVSKAHKLKKLAIYTFY-KDIG-IVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLR 276 (340)
Q Consensus 199 ~L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~-~~~~-~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~ 276 (340)
+|++|+++++.- ..+.....++|++|+++++. .... .....+++|+.| .+.++.+++... ..+..+++|++|+++
T Consensus 172 ~L~~L~l~~n~l-~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~Ls~n~l~~~~~-~~~~~l~~L~~L~L~ 248 (330)
T 1xku_A 172 KLSYIRIADTNI-TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKL-GLSFNSISAVDN-GSLANTPHLRELHLN 248 (330)
T ss_dssp TCCEEECCSSCC-CSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEE-ECCSSCCCEECT-TTGGGSTTCCEEECC
T ss_pred CcCEEECCCCcc-ccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEE-ECCCCcCceeCh-hhccCCCCCCEEECC
Confidence 999999998743 22322223899999999886 1111 112256788888 777776654322 124678999999999
Q ss_pred cCCCCccccc---ccccccEEEeecCcch----hhh-----ccCCCCeeEEEEeccCCC
Q 040471 277 FCRLPEKVKI---SSNQLKNLHFNSCENL----KAI-----DTDTPNLLSFTFSYDFNP 323 (340)
Q Consensus 277 ~c~~i~~~~~---~~~~L~~L~l~~c~~l----~~~-----~~~~p~L~~L~~~~~~~~ 323 (340)
+|. ++.++. .+++|++|+++++.-- ..+ ....+.++.+++.|+...
T Consensus 249 ~N~-l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 249 NNK-LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp SSC-CSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred CCc-CccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 875 445443 3689999999987531 111 112377889999987654
No 72
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.01 E-value=7.1e-09 Score=97.46 Aligned_cols=177 Identities=14% Similarity=0.120 Sum_probs=97.2
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCccc-----ccCcccceEecceEee--ChHHHHH
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTT-----IRLDSLKKLTLENVYI--NDQMFQK 192 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~-----~~~~~L~~L~L~~~~~--~~~~l~~ 192 (340)
.++++|++..+.... .....++... .+++|++|++++|.+....+... ..+++|+.+++.++.+ ....+..
T Consensus 220 ~~L~~L~l~~~~l~~-~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~ 297 (520)
T 2z7x_B 220 PKLSNLTLNNIETTW-NSFIRILQLV-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE 297 (520)
T ss_dssp TTCCEEEEEEEEEEH-HHHHHHHHHH-HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHH
T ss_pred cchhhccccccccCH-HHHHHHHHHh-hhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhc
Confidence 577788876554310 0011111111 24689999999987653233333 5678888888887765 2234444
Q ss_pred HHhcCCCCcEEEecccCCCcccccccCCCCceEEecccc-cc-cceeeecCcCcceEeccCceeeccH-HHHHHHcCCCc
Q 040471 193 LTNECPSLEDFEISACWGLKNLCVSKAHKLKKLAIYTFY-KD-IGIVEIVVPSLQQQLMLTSVWFMDE-EFDRFISKFPL 269 (340)
Q Consensus 193 l~~~~p~L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~-~~-~~~~~~~~p~L~~ll~l~~~~i~~~-~~~~l~~~~~~ 269 (340)
+.. .++|+.|++++|..........+++|++|+++++. .. .......+++|+.| .+.++.+++- .+...+..+++
T Consensus 298 ~~~-~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L-~L~~N~l~~l~~~~~~~~~l~~ 375 (520)
T 2z7x_B 298 IFS-NMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETL-ILQMNQLKELSKIAEMTTQMKS 375 (520)
T ss_dssp HHH-TCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEE-ECCSSCCCBHHHHHHHHTTCTT
T ss_pred ccc-cCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEE-EccCCccCccccchHHHhhCCC
Confidence 322 35677777777653322222456777777777765 11 11111345666666 6666666552 34445666777
Q ss_pred ccEEecccCCCCcccccc----cccccEEEeecCc
Q 040471 270 LEDLLLRFCRLPEKVKIS----SNQLKNLHFNSCE 300 (340)
Q Consensus 270 L~~L~l~~c~~i~~~~~~----~~~L~~L~l~~c~ 300 (340)
|++|++++|..-+.++.. +++|++|++++|.
T Consensus 376 L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410 (520)
T ss_dssp CCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC
T ss_pred CCEEECCCCcCCcccccchhccCccCCEEECcCCC
Confidence 777777765532213321 3556666665553
No 73
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.01 E-value=3.5e-09 Score=100.23 Aligned_cols=169 Identities=14% Similarity=0.050 Sum_probs=112.5
Q ss_pred CCCccEEEeeceeCCCCCCccc-ccCcccceEecceEeeChHHHHHH--HhcCCCCcEEEecccCCCcc----cccccCC
Q 040471 148 AKSMATLSLFGCRMEQPSDTTT-IRLDSLKKLTLENVYINDQMFQKL--TNECPSLEDFEISACWGLKN----LCVSKAH 220 (340)
Q Consensus 148 ~~~L~~L~L~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~~~~~l~~l--~~~~p~L~~L~l~~c~~~~~----~~~~~~~ 220 (340)
.++|+.|+++++.+.. .+... ..+++|++|+++++.+++...... ...+|+|+.|++++|.--.. ..+..++
T Consensus 309 ~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~ 387 (549)
T 2z81_A 309 LEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387 (549)
T ss_dssp STTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCT
T ss_pred cccceEEEeccCcccc-CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCC
Confidence 3567777777776643 21222 368999999999998865444332 45789999999998843221 1255688
Q ss_pred CCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCcccccccccccEEEeecC
Q 040471 221 KLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKISSNQLKNLHFNSC 299 (340)
Q Consensus 221 ~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~~~L~~L~l~~c 299 (340)
+|+.|+++++. ..+.......++|+.+ .+.++.++.-. ..-.++|++|++++|. ++.....+++|++|+++++
T Consensus 388 ~L~~L~Ls~N~l~~lp~~~~~~~~L~~L-~Ls~N~l~~l~----~~~~~~L~~L~Ls~N~-l~~~~~~l~~L~~L~Ls~N 461 (549)
T 2z81_A 388 NLTSLDISRNTFHPMPDSCQWPEKMRFL-NLSSTGIRVVK----TCIPQTLEVLDVSNNN-LDSFSLFLPRLQELYISRN 461 (549)
T ss_dssp TCCEEECTTCCCCCCCSCCCCCTTCCEE-ECTTSCCSCCC----TTSCTTCSEEECCSSC-CSCCCCCCTTCCEEECCSS
T ss_pred CCCEEECCCCCCccCChhhcccccccEE-ECCCCCccccc----chhcCCceEEECCCCC-hhhhcccCChhcEEECCCC
Confidence 99999999886 2222222346778887 77766654211 0113689999999875 5555566899999999988
Q ss_pred cchhhhc--cCCCCeeEEEEeccCCCC
Q 040471 300 ENLKAID--TDTPNLLSFTFSYDFNPI 324 (340)
Q Consensus 300 ~~l~~~~--~~~p~L~~L~~~~~~~~~ 324 (340)
.- ..+. ...++|+.|++.++....
T Consensus 462 ~l-~~ip~~~~l~~L~~L~Ls~N~l~~ 487 (549)
T 2z81_A 462 KL-KTLPDASLFPVLLVMKISRNQLKS 487 (549)
T ss_dssp CC-SSCCCGGGCTTCCEEECCSSCCCC
T ss_pred cc-CcCCCcccCccCCEEecCCCccCC
Confidence 43 3332 246899999999976654
No 74
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.00 E-value=2.8e-09 Score=102.02 Aligned_cols=71 Identities=18% Similarity=0.227 Sum_probs=35.3
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS 199 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 199 (340)
++++.|+++.+.. ..+|. ..++|++|++++|.+..- ...+++|++|++.++.++. +....++
T Consensus 81 ~~L~~L~Ls~N~l------~~lp~---~l~~L~~L~Ls~N~l~~l----~~~l~~L~~L~L~~N~l~~-----lp~~l~~ 142 (622)
T 3g06_A 81 PELRTLEVSGNQL------TSLPV---LPPGLLELSIFSNPLTHL----PALPSGLCKLWIFGNQLTS-----LPVLPPG 142 (622)
T ss_dssp TTCCEEEECSCCC------SCCCC---CCTTCCEEEECSCCCCCC----CCCCTTCCEEECCSSCCSC-----CCCCCTT
T ss_pred CCCCEEEcCCCcC------CcCCC---CCCCCCEEECcCCcCCCC----CCCCCCcCEEECCCCCCCc-----CCCCCCC
Confidence 4566666655443 23443 345666666666654431 1144555555555554421 1112355
Q ss_pred CcEEEeccc
Q 040471 200 LEDFEISAC 208 (340)
Q Consensus 200 L~~L~l~~c 208 (340)
|++|++++|
T Consensus 143 L~~L~Ls~N 151 (622)
T 3g06_A 143 LQELSVSDN 151 (622)
T ss_dssp CCEEECCSS
T ss_pred CCEEECcCC
Confidence 666666555
No 75
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.00 E-value=7.3e-10 Score=105.78 Aligned_cols=145 Identities=21% Similarity=0.138 Sum_probs=106.1
Q ss_pred HcCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471 119 DNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP 198 (340)
Q Consensus 119 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p 198 (340)
.++|+.|++..+.. ..++. +..+++|+.|+|++|.+.. .+....+++|+.|+|+++.+.. +. -+..++
T Consensus 64 l~~L~~L~Ls~N~l------~~~~~-l~~l~~L~~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~ 131 (605)
T 1m9s_A 64 LPNVTKLFLNGNKL------TDIKP-LTNLKNLGWLFLDENKIKD--LSSLKDLKKLKSLSLEHNGISD--IN-GLVHLP 131 (605)
T ss_dssp CTTCCEEECTTSCC------CCCGG-GGGCTTCCEEECCSSCCCC--CTTSTTCTTCCEEECTTSCCCC--CG-GGGGCT
T ss_pred CCCCCEEEeeCCCC------CCChh-hccCCCCCEEECcCCCCCC--ChhhccCCCCCEEEecCCCCCC--Cc-cccCCC
Confidence 37899999866544 33444 6778999999999988765 2356778999999999998832 11 256789
Q ss_pred CCcEEEecccCCCcccccccCCCCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEeccc
Q 040471 199 SLEDFEISACWGLKNLCVSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRF 277 (340)
Q Consensus 199 ~L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~ 277 (340)
+|+.|+|++|.--..-.+..+++|+.|+++++. ..... ...+++|+.| .+.++.+++- .-+..+++|+.|++++
T Consensus 132 ~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L-~Ls~N~i~~l---~~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 132 QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNL-YLSKNHISDL---RALAGLKNLDVLELFS 206 (605)
T ss_dssp TCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEE-ECCSSCCCBC---GGGTTCTTCSEEECCS
T ss_pred ccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEE-ECcCCCCCCC---hHHccCCCCCEEEccC
Confidence 999999998854333345678999999999887 22222 3357888888 7887777663 2367889999999998
Q ss_pred CCC
Q 040471 278 CRL 280 (340)
Q Consensus 278 c~~ 280 (340)
|..
T Consensus 207 N~l 209 (605)
T 1m9s_A 207 QEC 209 (605)
T ss_dssp EEE
T ss_pred CcC
Confidence 764
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.00 E-value=3.4e-10 Score=95.35 Aligned_cols=11 Identities=9% Similarity=-0.091 Sum_probs=5.4
Q ss_pred CCeeEEEEecc
Q 040471 310 PNLLSFTFSYD 320 (340)
Q Consensus 310 p~L~~L~~~~~ 320 (340)
++|+.|++.++
T Consensus 205 ~~L~~L~l~~N 215 (239)
T 2xwt_C 205 SGPSLLDVSQT 215 (239)
T ss_dssp BCCSEEECTTC
T ss_pred cCCcEEECCCC
Confidence 44555555443
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.99 E-value=1.3e-09 Score=93.61 Aligned_cols=184 Identities=14% Similarity=0.079 Sum_probs=116.2
Q ss_pred HcCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471 119 DNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP 198 (340)
Q Consensus 119 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p 198 (340)
..++++|.+..+.. ..++ .+..+++|++|+++++.+.. .+....+++|++|++.++.++.- ....+..++
T Consensus 40 l~~L~~L~l~~~~i------~~~~-~l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~ 109 (272)
T 3rfs_A 40 LNSIDQIIANNSDI------KSVQ-GIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSL-PNGVFDKLT 109 (272)
T ss_dssp HTTCCEEECTTSCC------CCCT-TGGGCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSCCCCC-CTTTTTTCT
T ss_pred ccceeeeeeCCCCc------cccc-ccccCCCCcEEECCCCCCCC--chhhcCCCCCCEEECCCCccCcc-ChhHhcCCc
Confidence 46888888865543 2333 46678999999999988765 24566889999999999877321 122346789
Q ss_pred CCcEEEecccCCCcc--cccccCCCCceEEecccc-ccccee-eecCcCcceEeccCceeeccHHHHHHHcCCCcccEEe
Q 040471 199 SLEDFEISACWGLKN--LCVSKAHKLKKLAIYTFY-KDIGIV-EIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLL 274 (340)
Q Consensus 199 ~L~~L~l~~c~~~~~--~~~~~~~~L~~L~i~~~~-~~~~~~-~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~ 274 (340)
+|++|++++|.--.. -.+..+++|+.|+++++. .....- ...+++|+.| .+.++.+++.. ...+.++++|++|+
T Consensus 110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~-~~~~~~l~~L~~L~ 187 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL-DLSYNQLQSLP-EGVFDKLTQLKDLR 187 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-ECCSSCCCCCC-TTTTTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEE-ECCCCCcCccC-HHHhcCCccCCEEE
Confidence 999999998853221 124567899999999886 211111 1245677776 66666554321 12245677788888
Q ss_pred cccCCCCccccc----ccccccEEEeecCcchhhhccCCCCeeEEEEec
Q 040471 275 LRFCRLPEKVKI----SSNQLKNLHFNSCENLKAIDTDTPNLLSFTFSY 319 (340)
Q Consensus 275 l~~c~~i~~~~~----~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~~~~ 319 (340)
+++|.. +.++. .+++|+.|++.++.. ...+|+|+.+++.+
T Consensus 188 L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~~----~~~~~~l~~l~~~~ 231 (272)
T 3rfs_A 188 LYQNQL-KSVPDGVFDRLTSLQYIWLHDNPW----DCTCPGIRYLSEWI 231 (272)
T ss_dssp CCSSCC-SCCCTTTTTTCTTCCEEECCSSCB----CCCTTTTHHHHHHH
T ss_pred CCCCcC-CccCHHHHhCCcCCCEEEccCCCc----cccCcHHHHHHHHH
Confidence 876653 33322 257777777777642 23455666555444
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.99 E-value=6.9e-10 Score=95.56 Aligned_cols=182 Identities=12% Similarity=0.036 Sum_probs=122.5
Q ss_pred cccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCc--ccc
Q 040471 138 VCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLK--NLC 215 (340)
Q Consensus 138 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~--~~~ 215 (340)
...+|..+. ++|++|+++++.+..........+++|++|+++++.++.-. ...+..+++|++|+++++.--. .-.
T Consensus 19 l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp CSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred ccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCccCccChhh
Confidence 445665442 57999999998875433235567899999999999773211 1224678999999999985322 123
Q ss_pred cccCCCCceEEecccc-ccccee-eecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCcccccc----cc
Q 040471 216 VSKAHKLKKLAIYTFY-KDIGIV-EIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKIS----SN 289 (340)
Q Consensus 216 ~~~~~~L~~L~i~~~~-~~~~~~-~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~----~~ 289 (340)
+.++++|+.|+++++. ...... ...+++|+.| .+.++.+++..+...+.++++|++|++++|. ++.++.. ++
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~ 173 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL-NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLH 173 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEE-ECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHH
T ss_pred hcCCccccEEECCCCCccccCchhcccCCCCCEE-ECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhh
Confidence 5678999999999886 233322 2357888888 7777776654344456778999999999876 4443321 35
Q ss_pred ccc----EEEeecCcch--hhhccCCCCeeEEEEeccCCCC
Q 040471 290 QLK----NLHFNSCENL--KAIDTDTPNLLSFTFSYDFNPI 324 (340)
Q Consensus 290 ~L~----~L~l~~c~~l--~~~~~~~p~L~~L~~~~~~~~~ 324 (340)
+|+ +|+++++.-- ..-....++|+.|++.++....
T Consensus 174 ~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~ 214 (276)
T 2z62_A 174 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS 214 (276)
T ss_dssp TCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSC
T ss_pred hccccceeeecCCCcccccCccccCCCcccEEECCCCceee
Confidence 566 7888776532 1112233589999999976654
No 79
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.99 E-value=1.9e-09 Score=103.08 Aligned_cols=92 Identities=21% Similarity=0.186 Sum_probs=64.0
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS 199 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 199 (340)
.+++.|++..+.. ..+|. .+++|++|+|++|.+.. . + ..+++|++|+++++.++. +....++
T Consensus 61 ~~L~~L~L~~N~l------~~lp~---~l~~L~~L~Ls~N~l~~-l-p--~~l~~L~~L~Ls~N~l~~-----l~~~l~~ 122 (622)
T 3g06_A 61 AHITTLVIPDNNL------TSLPA---LPPELRTLEVSGNQLTS-L-P--VLPPGLLELSIFSNPLTH-----LPALPSG 122 (622)
T ss_dssp TTCSEEEECSCCC------SCCCC---CCTTCCEEEECSCCCSC-C-C--CCCTTCCEEEECSCCCCC-----CCCCCTT
T ss_pred CCCcEEEecCCCC------CCCCC---cCCCCCEEEcCCCcCCc-C-C--CCCCCCCEEECcCCcCCC-----CCCCCCC
Confidence 5889999876654 35665 46889999999988764 1 1 277999999999887732 1125789
Q ss_pred CcEEEecccCCCcccccccCCCCceEEecccc
Q 040471 200 LEDFEISACWGLKNLCVSKAHKLKKLAIYTFY 231 (340)
Q Consensus 200 L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~ 231 (340)
|+.|++++|. +..+.. .+++|++|+++++.
T Consensus 123 L~~L~L~~N~-l~~lp~-~l~~L~~L~Ls~N~ 152 (622)
T 3g06_A 123 LCKLWIFGNQ-LTSLPV-LPPGLQELSVSDNQ 152 (622)
T ss_dssp CCEEECCSSC-CSCCCC-CCTTCCEEECCSSC
T ss_pred cCEEECCCCC-CCcCCC-CCCCCCEEECcCCc
Confidence 9999998874 322221 24777777777765
No 80
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.98 E-value=2.2e-10 Score=113.40 Aligned_cols=104 Identities=12% Similarity=0.088 Sum_probs=71.3
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeecee-CCC-CCCcc-------cccCcccceEecceEeeChHHH
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCR-MEQ-PSDTT-------TIRLDSLKKLTLENVYINDQMF 190 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~-~~~~~-------~~~~~~L~~L~L~~~~~~~~~l 190 (340)
.+++.|++..+.. ...+|..+..+++|+.|+|++|. +.. ..+.. ...+++|+.|+++++.++ .+
T Consensus 491 ~~L~~L~Ls~N~l-----~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~i 563 (876)
T 4ecn_A 491 KDLTDVELYNCPN-----MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EF 563 (876)
T ss_dssp TTCCEEEEESCTT-----CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BC
T ss_pred CCCCEEECcCCCC-----CccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--cc
Confidence 6899999987754 35678888889999999999886 543 12221 224558999999888775 23
Q ss_pred HH--HHhcCCCCcEEEecccCCCccc-ccccCCCCceEEecccc
Q 040471 191 QK--LTNECPSLEDFEISACWGLKNL-CVSKAHKLKKLAIYTFY 231 (340)
Q Consensus 191 ~~--l~~~~p~L~~L~l~~c~~~~~~-~~~~~~~L~~L~i~~~~ 231 (340)
.. .+..+++|+.|++++|.-- .+ .+..+++|+.|+++++.
T Consensus 564 p~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~ 606 (876)
T 4ecn_A 564 PASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQ 606 (876)
T ss_dssp CCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSC
T ss_pred CChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCc
Confidence 22 4567888888888887432 22 34456777777777665
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.98 E-value=9.6e-10 Score=92.59 Aligned_cols=103 Identities=13% Similarity=0.120 Sum_probs=46.5
Q ss_pred cCccEEEEEeec-CCCCCccccCCc-cccCCCCccEEEeec-eeCCCCCCcccccCcccceEecceEeeChHHHHHHHhc
Q 040471 120 NGIKDLVLMVHN-MTQEDTVCILPQ-TIFSAKSMATLSLFG-CRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNE 196 (340)
Q Consensus 120 ~~l~~L~l~~~~-~~~~~~~~~l~~-~~~~~~~L~~L~L~~-~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~ 196 (340)
++++.|++..+. . ..++. .+..+++|++|++++ +.+..........+++|++|++.++.++. +.. +..
T Consensus 55 ~~L~~L~l~~n~~l------~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~--lp~-~~~ 125 (239)
T 2xwt_C 55 PNISRIYVSIDVTL------QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM--FPD-LTK 125 (239)
T ss_dssp TTCCEEEEECCSSC------CEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS--CCC-CTT
T ss_pred CCCcEEeCCCCCCc------ceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc--ccc-ccc
Confidence 355555555443 2 22332 333455566666655 33332111223345556666665555421 111 334
Q ss_pred CCCCc---EEEecccCCCccc---ccccCCCCc-eEEecccc
Q 040471 197 CPSLE---DFEISACWGLKNL---CVSKAHKLK-KLAIYTFY 231 (340)
Q Consensus 197 ~p~L~---~L~l~~c~~~~~~---~~~~~~~L~-~L~i~~~~ 231 (340)
+++|+ .|+++++..+..+ .+..+++|+ .|+++++.
T Consensus 126 l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC
Confidence 55555 5555555333322 133445555 55555443
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.97 E-value=5.9e-10 Score=95.86 Aligned_cols=85 Identities=16% Similarity=0.192 Sum_probs=35.1
Q ss_pred ccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccc---ccccCCC
Q 040471 145 IFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNL---CVSKAHK 221 (340)
Q Consensus 145 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~---~~~~~~~ 221 (340)
+..+++|++|++++|.+..........+++|++|++.++.++.- ....+..+++|++|++++|. +..+ .+..+++
T Consensus 81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~ 158 (272)
T 3rfs_A 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL-PDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTN 158 (272)
T ss_dssp GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCcc-CHHHhccCCCCCEEECCCCc-cCccCHHHhccCcc
Confidence 33445555555555544321111223445555555555444210 01112344555555555542 1111 1233455
Q ss_pred CceEEecccc
Q 040471 222 LKKLAIYTFY 231 (340)
Q Consensus 222 L~~L~i~~~~ 231 (340)
|+.|+++++.
T Consensus 159 L~~L~l~~n~ 168 (272)
T 3rfs_A 159 LTELDLSYNQ 168 (272)
T ss_dssp CCEEECCSSC
T ss_pred CCEEECCCCC
Confidence 5555555443
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.97 E-value=8.5e-10 Score=98.95 Aligned_cols=229 Identities=11% Similarity=0.008 Sum_probs=140.0
Q ss_pred cccceEEEEEeccCcCCChhhHHHHHHHHHH-c-CccEEEEEeecCCCCCccccCCccccCC-CCccEEEeeceeCCCCC
Q 040471 89 FRMQELRLFQSFLDVKGSAPLLDKWIGLAVD-N-GIKDLVLMVHNMTQEDTVCILPQTIFSA-KSMATLSLFGCRMEQPS 165 (340)
Q Consensus 89 ~~l~~l~l~~~~~~~~~~~~~l~~~l~~~~~-~-~l~~L~l~~~~~~~~~~~~~l~~~~~~~-~~L~~L~L~~~~~~~~~ 165 (340)
..++.+.+.... ........+...... + ++++|+++.+... ......+...+... ++|++|++++|.+....
T Consensus 22 ~~L~~L~Ls~n~----l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 96 (362)
T 3goz_A 22 HGVTSLDLSLNN----LYSISTVELIQAFANTPASVTSLNLSGNSLG-FKNSDELVQILAAIPANVTSLNLSGNFLSYKS 96 (362)
T ss_dssp TTCCEEECTTSC----GGGSCHHHHHHHHHTCCTTCCEEECCSSCGG-GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred CCceEEEccCCC----CChHHHHHHHHHHHhCCCceeEEECcCCCCC-HHHHHHHHHHHhccCCCccEEECcCCcCChHH
Confidence 458888875332 111122222233332 4 7999999776541 00111222222333 89999999999876432
Q ss_pred Ccc----cccC-cccceEecceEeeChHHHHHH---Hhc-CCCCcEEEecccCCCc----cc--ccccCC-CCceEEecc
Q 040471 166 DTT----TIRL-DSLKKLTLENVYINDQMFQKL---TNE-CPSLEDFEISACWGLK----NL--CVSKAH-KLKKLAIYT 229 (340)
Q Consensus 166 ~~~----~~~~-~~L~~L~L~~~~~~~~~l~~l---~~~-~p~L~~L~l~~c~~~~----~~--~~~~~~-~L~~L~i~~ 229 (340)
... ...+ ++|++|+++++.+++.....+ +.. +++|++|++++|.--. .+ .+...+ +|++|++++
T Consensus 97 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 176 (362)
T 3goz_A 97 SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC
Confidence 221 2234 899999999999855444443 444 5799999999984321 11 122344 999999999
Q ss_pred ccc-ccce--e---eecC-cCcceEeccCceeeccHHHH---HHHc-CCCcccEEecccCCCCccccc--------cccc
Q 040471 230 FYK-DIGI--V---EIVV-PSLQQQLMLTSVWFMDEEFD---RFIS-KFPLLEDLLLRFCRLPEKVKI--------SSNQ 290 (340)
Q Consensus 230 ~~~-~~~~--~---~~~~-p~L~~ll~l~~~~i~~~~~~---~l~~-~~~~L~~L~l~~c~~i~~~~~--------~~~~ 290 (340)
|.- .... + .... ++|+.| +++++.+++.+.. ..+. ..++|++|++++|. +++.+. .+++
T Consensus 177 n~l~~~~~~~l~~~l~~~~~~L~~L-~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~ 254 (362)
T 3goz_A 177 NNLASKNCAELAKFLASIPASVTSL-DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKH 254 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEE-ECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTT
T ss_pred CCCchhhHHHHHHHHHhCCCCCCEE-ECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCC
Confidence 871 1111 1 1134 589998 8888888875333 3333 35799999999875 555433 3589
Q ss_pred ccEEEeecCc--c-----hhhhc---cCCCCeeEEEEeccCCCC
Q 040471 291 LKNLHFNSCE--N-----LKAID---TDTPNLLSFTFSYDFNPI 324 (340)
Q Consensus 291 L~~L~l~~c~--~-----l~~~~---~~~p~L~~L~~~~~~~~~ 324 (340)
|++|++++|. . +..+. ...++|+.|+++++....
T Consensus 255 L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 255 LQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp CSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred ccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 9999999886 1 22222 345678888888876653
No 84
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.97 E-value=1.3e-09 Score=101.65 Aligned_cols=166 Identities=13% Similarity=0.031 Sum_probs=116.6
Q ss_pred CCCccEEEeeceeCCCCCCcccccCcccceEecceEeeC-hHHHHHHHhcCCCCcEEEecccCCCcccccccCCCCceEE
Q 040471 148 AKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYIN-DQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLA 226 (340)
Q Consensus 148 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~~L~~L~ 226 (340)
+++|+.|+|+++.+..........+++|++|+|+++.++ ... +..+++|++|++++|. +..+ ...++|+.|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~-l~~l--~~~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNY-VQEL--LVGPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE----CTTCTTCCEEECCSSE-EEEE--EECTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc----cccCCCCCEEEecCCc-CCCC--CCCCCcCEEE
Confidence 458999999999887644445678999999999999873 222 6789999999999983 3332 2348999999
Q ss_pred ecccccccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCcccc----cccccccEEEeecCcch
Q 040471 227 IYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVK----ISSNQLKNLHFNSCENL 302 (340)
Q Consensus 227 i~~~~~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~----~~~~~L~~L~l~~c~~l 302 (340)
++++.- ........++|+.| .+.++.+++.... .+.++++|++|++++|..-+..+ ..+++|+.|++++|.--
T Consensus 106 L~~N~l-~~~~~~~l~~L~~L-~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNI-SRVSCSRGQGKKNI-YLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCC-CCEEECCCSSCEEE-ECCSSCCCSGGGB-CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcC-CCCCccccCCCCEE-ECCCCCCCCCCch-hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 999871 11112246788888 7777776653221 24568999999999876432222 23689999999988632
Q ss_pred hhhc--cCCCCeeEEEEeccCCCC
Q 040471 303 KAID--TDTPNLLSFTFSYDFNPI 324 (340)
Q Consensus 303 ~~~~--~~~p~L~~L~~~~~~~~~ 324 (340)
.+. ...++|+.|+++++....
T Consensus 183 -~~~~~~~l~~L~~L~Ls~N~l~~ 205 (487)
T 3oja_A 183 -DVKGQVVFAKLKTLDLSSNKLAF 205 (487)
T ss_dssp -EEECCCCCTTCCEEECCSSCCCE
T ss_pred -cccccccCCCCCEEECCCCCCCC
Confidence 221 135778888887766543
No 85
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.96 E-value=2.6e-08 Score=94.54 Aligned_cols=82 Identities=13% Similarity=0.032 Sum_probs=43.7
Q ss_pred cCCCCceEEecccc-cc-cceeeecCcCcceEeccCceeeccH-HHHHHHcCCCcccEEecccCCCCccccc----cccc
Q 040471 218 KAHKLKKLAIYTFY-KD-IGIVEIVVPSLQQQLMLTSVWFMDE-EFDRFISKFPLLEDLLLRFCRLPEKVKI----SSNQ 290 (340)
Q Consensus 218 ~~~~L~~L~i~~~~-~~-~~~~~~~~p~L~~ll~l~~~~i~~~-~~~~l~~~~~~L~~L~l~~c~~i~~~~~----~~~~ 290 (340)
.+++|+.|+++++. .. .......+++|+.+ .+.++.+++- .+...+.++++|++|++++|..-+.++. .+++
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTL-ILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEE-ECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEE-ECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 45667777776665 11 11111245666666 6666666542 3334456777777777776653221222 1345
Q ss_pred ccEEEeecCc
Q 040471 291 LKNLHFNSCE 300 (340)
Q Consensus 291 L~~L~l~~c~ 300 (340)
|++|++++|.
T Consensus 430 L~~L~l~~n~ 439 (562)
T 3a79_B 430 ILVLNLSSNM 439 (562)
T ss_dssp CCEEECCSSC
T ss_pred CCEEECCCCC
Confidence 5555555543
No 86
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.95 E-value=2.6e-09 Score=106.43 Aligned_cols=84 Identities=17% Similarity=0.211 Sum_probs=42.9
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcc--cccCcccceEecceEeeChHHHHHHHhcC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTT--TIRLDSLKKLTLENVYINDQMFQKLTNEC 197 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~l~~~~ 197 (340)
.+++.|++..+.. ....|..+..+++|++|+|++|.+....... ...+++|++|+++++.++.......+..+
T Consensus 73 ~~L~~L~Ls~N~l-----~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L 147 (844)
T 3j0a_A 73 PNLRILDLGSSKI-----YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL 147 (844)
T ss_dssp TTCCEEECTTCCC-----CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTC
T ss_pred CCCCEEECCCCcC-----cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhC
Confidence 3566666644433 1223445555666666666666554321111 34566666666666655322222224456
Q ss_pred CCCcEEEeccc
Q 040471 198 PSLEDFEISAC 208 (340)
Q Consensus 198 p~L~~L~l~~c 208 (340)
++|++|+++++
T Consensus 148 ~~L~~L~Ls~N 158 (844)
T 3j0a_A 148 NSLKSIDFSSN 158 (844)
T ss_dssp SSCCEEEEESS
T ss_pred CCCCEEECCCC
Confidence 66666666655
No 87
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.94 E-value=1.1e-09 Score=96.25 Aligned_cols=165 Identities=15% Similarity=0.078 Sum_probs=116.0
Q ss_pred CCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeC-hHHHHHHHhcCCCCcEEEecccCCCcccccccCCCCceE
Q 040471 147 SAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYIN-DQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKL 225 (340)
Q Consensus 147 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~~L~~L 225 (340)
.+++|++|+++++.+..........+++|++|+++++.++ ... +..+++|++|++++|. +.. +...++|+.|
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~-l~~--l~~~~~L~~L 104 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNY-VQE--LLVGPSIETL 104 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE----ETTCTTCCEEECCSSE-EEE--EEECTTCCEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh----hhhcCCCCEEECcCCc-ccc--ccCCCCcCEE
Confidence 4679999999999887643345678999999999998873 222 6789999999999884 332 2345899999
Q ss_pred Eeccccccccee-eecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCcccc-----cccccccEEEeecC
Q 040471 226 AIYTFYKDIGIV-EIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVK-----ISSNQLKNLHFNSC 299 (340)
Q Consensus 226 ~i~~~~~~~~~~-~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~-----~~~~~L~~L~l~~c 299 (340)
+++++. +..+ ....++|+.+ .+.++.+++..-. .+.++++|++|++++|.. +... ..+++|++|++++|
T Consensus 105 ~l~~n~--l~~~~~~~~~~L~~L-~l~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 105 HAANNN--ISRVSCSRGQGKKNI-YLANNKITMLRDL-DEGCRSRVQYLDLKLNEI-DTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp ECCSSC--CSEEEECCCSSCEEE-ECCSSCCCSGGGB-CTGGGSSEEEEECTTSCC-CEEEGGGGGGGTTTCCEEECTTS
T ss_pred ECCCCc--cCCcCccccCCCCEE-ECCCCCCCCccch-hhhccCCCCEEECCCCCC-CcccHHHHhhccCcCCEEECCCC
Confidence 999886 2222 2246788888 7777776653211 245679999999998764 3322 23589999999988
Q ss_pred cchhhhc--cCCCCeeEEEEeccCCCC
Q 040471 300 ENLKAID--TDTPNLLSFTFSYDFNPI 324 (340)
Q Consensus 300 ~~l~~~~--~~~p~L~~L~~~~~~~~~ 324 (340)
.-- .+. ...++|+.|+++++....
T Consensus 180 ~l~-~~~~~~~l~~L~~L~Ls~N~l~~ 205 (317)
T 3o53_A 180 FIY-DVKGQVVFAKLKTLDLSSNKLAF 205 (317)
T ss_dssp CCC-EEECCCCCTTCCEEECCSSCCCE
T ss_pred cCc-ccccccccccCCEEECCCCcCCc
Confidence 632 221 125778888887765543
No 88
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.94 E-value=2.2e-09 Score=85.20 Aligned_cols=131 Identities=18% Similarity=0.119 Sum_probs=94.5
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS 199 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 199 (340)
+++++|++..+.. .+..+|..+..+++|+.|++++|.+... .....+++|++|+++++.++.. +..+...+++
T Consensus 24 ~~L~~L~l~~n~l----~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~ 96 (168)
T 2ell_A 24 AAVRELVLDNCKS----NDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGG-LDMLAEKLPN 96 (168)
T ss_dssp TSCSEEECCSCBC----BTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTT
T ss_pred ccCCEEECCCCCC----ChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchH-HHHHHhhCCC
Confidence 5788888877665 3347787777889999999999987653 4566789999999999988432 4455667999
Q ss_pred CcEEEecccCCCc--c-cccccCCCCceEEecccccccceeeecCcCcceEeccCceeeccH--HHHHHHcCCCcccEEe
Q 040471 200 LEDFEISACWGLK--N-LCVSKAHKLKKLAIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDE--EFDRFISKFPLLEDLL 274 (340)
Q Consensus 200 L~~L~l~~c~~~~--~-~~~~~~~~L~~L~i~~~~~~~~~~~~~~p~L~~ll~l~~~~i~~~--~~~~l~~~~~~L~~L~ 274 (340)
|+.|++++|.--. . -.+..+++|+.|+++++. +++. .....+..+++|++|+
T Consensus 97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-----------------------l~~~~~~~~~~~~~l~~L~~L~ 153 (168)
T 2ell_A 97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-----------------------VTNLNDYRESVFKLLPQLTYLD 153 (168)
T ss_dssp CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-----------------------GGTSTTHHHHHHTTCSSCCEET
T ss_pred CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-----------------------CcchHHHHHHHHHhCccCcEec
Confidence 9999999884322 1 234567888888888775 2111 1124577889999999
Q ss_pred cccCCC
Q 040471 275 LRFCRL 280 (340)
Q Consensus 275 l~~c~~ 280 (340)
+++|..
T Consensus 154 l~~n~~ 159 (168)
T 2ell_A 154 GYDRED 159 (168)
T ss_dssp TEETTS
T ss_pred CCCCCh
Confidence 988763
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.93 E-value=1.2e-09 Score=94.94 Aligned_cols=169 Identities=15% Similarity=0.013 Sum_probs=81.3
Q ss_pred CCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccc--ccccCCCCceEE
Q 040471 149 KSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNL--CVSKAHKLKKLA 226 (340)
Q Consensus 149 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~--~~~~~~~L~~L~ 226 (340)
++++.|+++++.+..........+++|+.|++.++.++.-.. ...+++|+.|+++++.- ..+ .+..+++|+.|+
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLD 106 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSCC-SSCCCCTTTCTTCCEEE
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCCCcC-CcCchhhccCCCCCEEE
Confidence 456666666655543222234455666666666655521100 13556666666665532 111 123456666666
Q ss_pred ecccc-cccc-eeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCccccc----ccccccEEEeecCc
Q 040471 227 IYTFY-KDIG-IVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKI----SSNQLKNLHFNSCE 300 (340)
Q Consensus 227 i~~~~-~~~~-~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~----~~~~L~~L~l~~c~ 300 (340)
++++. .... .....+++|+.| .+.++.++.-. ...+..+++|++|+++++. ++.++. .+++|+.|+++++.
T Consensus 107 l~~N~l~~l~~~~~~~l~~L~~L-~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 107 VSFNRLTSLPLGALRGLGELQEL-YLKGNELKTLP-PGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp CCSSCCCCCCSSTTTTCTTCCEE-ECTTSCCCCCC-TTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCcCcccCHHHHcCCCCCCEE-ECCCCCCCccC-hhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCCc
Confidence 66554 1111 111234555555 44444443211 1223456677777777554 333332 24667777776653
Q ss_pred ch--hhhccCCCCeeEEEEeccCCCC
Q 040471 301 NL--KAIDTDTPNLLSFTFSYDFNPI 324 (340)
Q Consensus 301 ~l--~~~~~~~p~L~~L~~~~~~~~~ 324 (340)
-- ..-....++|+.+.+.|+...+
T Consensus 184 l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 184 LYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCccChhhcccccCCeEEeCCCCccC
Confidence 21 1111223566777776655543
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.93 E-value=1.5e-09 Score=97.34 Aligned_cols=198 Identities=14% Similarity=0.155 Sum_probs=131.2
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCC-CccEEEeeceeCCCCCCccccc-----CcccceEecceEeeCh---HHH
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAK-SMATLSLFGCRMEQPSDTTTIR-----LDSLKKLTLENVYIND---QMF 190 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~~~~~~~~~~~~-----~~~L~~L~L~~~~~~~---~~l 190 (340)
.++++|+++.+... ......+...+..++ +|++|+|++|.+.......... +++|++|+++++.+++ ..+
T Consensus 22 ~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 22 HGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp TTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 45999999766541 001111224455677 8999999999876533333333 3999999999999843 344
Q ss_pred HHHHhcC-CCCcEEEecccCCCcccc-------ccc-CCCCceEEeccccccc---ceee---ecCc-CcceEeccCcee
Q 040471 191 QKLTNEC-PSLEDFEISACWGLKNLC-------VSK-AHKLKKLAIYTFYKDI---GIVE---IVVP-SLQQQLMLTSVW 254 (340)
Q Consensus 191 ~~l~~~~-p~L~~L~l~~c~~~~~~~-------~~~-~~~L~~L~i~~~~~~~---~~~~---~~~p-~L~~ll~l~~~~ 254 (340)
...+..+ ++|++|++++|.- .... +.. +++|++|+++++.-.. ..+. ...+ +|+.| .+.++.
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L-~Ls~n~ 178 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDF-SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL-NLRGNN 178 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCG-GGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE-ECTTSC
T ss_pred HHHHHhCCCCccEEECcCCcC-CcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe-eecCCC
Confidence 4445556 8999999999853 3221 122 3699999999987221 1111 1344 89998 888888
Q ss_pred eccH---HHHHHHcCC-CcccEEecccCCCCcccccc---------cccccEEEeecCcch-------hhhccCCCCeeE
Q 040471 255 FMDE---EFDRFISKF-PLLEDLLLRFCRLPEKVKIS---------SNQLKNLHFNSCENL-------KAIDTDTPNLLS 314 (340)
Q Consensus 255 i~~~---~~~~l~~~~-~~L~~L~l~~c~~i~~~~~~---------~~~L~~L~l~~c~~l-------~~~~~~~p~L~~ 314 (340)
+++. .+...+..+ ++|++|++++|. +++.+.. .++|++|++++|.-- ..+....++|+.
T Consensus 179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~ 257 (362)
T 3goz_A 179 LASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSE
T ss_pred CchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccE
Confidence 7654 445566677 499999999876 5552221 358999999987531 223345689999
Q ss_pred EEEeccC
Q 040471 315 FTFSYDF 321 (340)
Q Consensus 315 L~~~~~~ 321 (340)
|+++++.
T Consensus 258 L~L~~n~ 264 (362)
T 3goz_A 258 VYLDYDI 264 (362)
T ss_dssp EEEEHHH
T ss_pred EEeccCC
Confidence 9999976
No 91
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.92 E-value=2.8e-10 Score=90.05 Aligned_cols=92 Identities=12% Similarity=0.164 Sum_probs=74.0
Q ss_pred CcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcccccc---c----CCCCceEEecccccccceeeecCcCc
Q 040471 172 LDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVS---K----AHKLKKLAIYTFYKDIGIVEIVVPSL 244 (340)
Q Consensus 172 ~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~---~----~~~L~~L~i~~~~~~~~~~~~~~p~L 244 (340)
-.+|+.|++++|.+++.++..+ ..|++|++|++++|..+++.++. . +++|++|++++|.
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~------------- 125 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG------------- 125 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT-------------
T ss_pred CceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC-------------
Confidence 3579999999999999999886 68999999999999988775432 2 3468888888776
Q ss_pred ceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCcccccc
Q 040471 245 QQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKIS 287 (340)
Q Consensus 245 ~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~ 287 (340)
.|+|.++..+ .++++|++|++++|+.+++.+..
T Consensus 126 ---------~ITD~Gl~~L-~~~~~L~~L~L~~c~~Itd~gl~ 158 (176)
T 3e4g_A 126 ---------NVTDKGIIAL-HHFRNLKYLFLSDLPGVKEKEKI 158 (176)
T ss_dssp ---------TCCHHHHHHG-GGCTTCCEEEEESCTTCCCHHHH
T ss_pred ---------cCCHHHHHHH-hcCCCCCEEECCCCCCCCchHHH
Confidence 5788888765 56899999999998888876543
No 92
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.92 E-value=3.2e-09 Score=103.19 Aligned_cols=197 Identities=15% Similarity=0.078 Sum_probs=114.1
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS 199 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 199 (340)
.++++|++..+.. ....|..+..+++|++|+++++.+..-.......+++|++|+++++.++.-. ...+..+++
T Consensus 49 ~~L~~L~Ls~n~l-----~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~ 122 (680)
T 1ziw_A 49 SQLTSLDVGFNTI-----SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK-NNPFVKQKN 122 (680)
T ss_dssp TTCSEEECCSSCC-----CCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-SCTTTTCTT
T ss_pred CcCcEEECCCCcc-----CccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccC-hhHccccCC
Confidence 6788888865543 1233445666888888888887765422223567888888888887662110 112456888
Q ss_pred CcEEEecccCCCcc--cccccCCCCceEEecccc-cccce--ee-ecCcCcceEeccCceeeccH---------------
Q 040471 200 LEDFEISACWGLKN--LCVSKAHKLKKLAIYTFY-KDIGI--VE-IVVPSLQQQLMLTSVWFMDE--------------- 258 (340)
Q Consensus 200 L~~L~l~~c~~~~~--~~~~~~~~L~~L~i~~~~-~~~~~--~~-~~~p~L~~ll~l~~~~i~~~--------------- 258 (340)
|++|++++|.-... -.+..+++|++|+++++. ..... +. ...++|+.+ .+.++.+++.
T Consensus 123 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L-~L~~n~l~~~~~~~~~~l~~L~~L~ 201 (680)
T 1ziw_A 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL-ELSSNQIKEFSPGCFHAIGRLFGLF 201 (680)
T ss_dssp CCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEE-ECTTCCCCCBCTTGGGGSSEECEEE
T ss_pred CCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEE-ECCCCcccccChhhhhhhhhhhhhh
Confidence 88888888743221 134467888888888775 11111 11 134667776 4444433211
Q ss_pred ---------HHHHHH--cCCCcccEEecccCCCCcccccc---c--ccccEEEeecCcch---hhhccCCCCeeEEEEec
Q 040471 259 ---------EFDRFI--SKFPLLEDLLLRFCRLPEKVKIS---S--NQLKNLHFNSCENL---KAIDTDTPNLLSFTFSY 319 (340)
Q Consensus 259 ---------~~~~l~--~~~~~L~~L~l~~c~~i~~~~~~---~--~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~ 319 (340)
....+. ...++|++|++++|..-+..+.. + ++|++|++++|.-- .......|+|++|++.+
T Consensus 202 l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (680)
T 1ziw_A 202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281 (680)
T ss_dssp CTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCC
Confidence 011110 12367777777766532222221 2 45999999887532 12224568999999988
Q ss_pred cCCC
Q 040471 320 DFNP 323 (340)
Q Consensus 320 ~~~~ 323 (340)
+...
T Consensus 282 n~l~ 285 (680)
T 1ziw_A 282 NNIQ 285 (680)
T ss_dssp CCBS
T ss_pred CccC
Confidence 6544
No 93
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.91 E-value=9.9e-10 Score=106.78 Aligned_cols=83 Identities=13% Similarity=0.037 Sum_probs=42.9
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCC-CcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPS-DTTTIRLDSLKKLTLENVYINDQMFQKLTNECP 198 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p 198 (340)
..++.|++..+.. ....|..+..+++|+.|+++++.+.... ......+++|++|+++++.+..-. ...+..+|
T Consensus 381 ~~L~~L~L~~n~l-----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~~~ 454 (680)
T 1ziw_A 381 SPLHILNLTKNKI-----SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT-RNSFALVP 454 (680)
T ss_dssp SCCCEEECTTSCC-----CEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECC-TTTTTTCT
T ss_pred CcCceEECCCCCC-----CeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeC-hhhhhcCc
Confidence 4677777755443 1223344555677777777776553211 123445667777777666541100 01123455
Q ss_pred CCcEEEeccc
Q 040471 199 SLEDFEISAC 208 (340)
Q Consensus 199 ~L~~L~l~~c 208 (340)
+|+.|++.++
T Consensus 455 ~L~~L~l~~n 464 (680)
T 1ziw_A 455 SLQRLMLRRV 464 (680)
T ss_dssp TCCEEECTTS
T ss_pred ccccchhccc
Confidence 5555555554
No 94
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.91 E-value=3.2e-09 Score=105.74 Aligned_cols=172 Identities=15% Similarity=0.154 Sum_probs=88.8
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS 199 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 199 (340)
.++++|++..+.. ....+..+..+++|+.|+|+++.+..........+++|++|+++++.++.-. ...+..+++
T Consensus 266 ~~L~~L~Ls~n~l-----~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~ 339 (844)
T 3j0a_A 266 SSVRHLDLSHGFV-----FSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY-SSNFYGLPK 339 (844)
T ss_dssp SCCCEEECTTCCC-----CEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC-SCSCSSCTT
T ss_pred CCccEEECCCCcc-----cccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC-HHHhcCCCC
Confidence 5677777754443 1223444555677777777777654322233456677777777776652110 112345677
Q ss_pred CcEEEecccCCCccc---ccccCCCCceEEecccc-ccc------cee----------eecCcCcceEeccCceeeccHH
Q 040471 200 LEDFEISACWGLKNL---CVSKAHKLKKLAIYTFY-KDI------GIV----------EIVVPSLQQQLMLTSVWFMDEE 259 (340)
Q Consensus 200 L~~L~l~~c~~~~~~---~~~~~~~L~~L~i~~~~-~~~------~~~----------~~~~p~L~~ll~l~~~~i~~~~ 259 (340)
|+.|+++++.- ..+ .+..+++|+.|+++++. ... ..+ .....+++.+ .+.++.+++-.
T Consensus 340 L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L-~ls~N~l~~l~ 417 (844)
T 3j0a_A 340 VAYIDLQKNHI-AIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLI-HLSENRLENLD 417 (844)
T ss_dssp CCEEECCSCCC-CCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEE-ECCSCCCCSST
T ss_pred CCEEECCCCCC-CccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccccccccccee-ecccCccccCc
Confidence 77777776632 221 23445667777776654 111 011 1112223333 55555555433
Q ss_pred HHHHHcCCCcccEEecccCCCCc----ccccccccccEEEeecC
Q 040471 260 FDRFISKFPLLEDLLLRFCRLPE----KVKISSNQLKNLHFNSC 299 (340)
Q Consensus 260 ~~~l~~~~~~L~~L~l~~c~~i~----~~~~~~~~L~~L~l~~c 299 (340)
....+.++++|++|++++|..-. .....+++|+.|+++++
T Consensus 418 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N 461 (844)
T 3j0a_A 418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461 (844)
T ss_dssp THHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESC
T ss_pred hhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCC
Confidence 34445678888888888765321 11112355555555543
No 95
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.89 E-value=4.5e-09 Score=93.01 Aligned_cols=189 Identities=13% Similarity=0.052 Sum_probs=103.2
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS 199 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 199 (340)
+++++|++..+.. ....|..+..+++|++|+++++.+.. ... ..+++|++|++.++.++.- ....+..+++
T Consensus 78 ~~L~~L~L~~n~l-----~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~--~~~~~L~~L~l~~n~i~~~-~~~~~~~l~~ 148 (332)
T 2ft3_A 78 QHLYALVLVNNKI-----SKIHEKAFSPLRKLQKLYISKNHLVE-IPP--NLPSSLVELRIHDNRIRKV-PKGVFSGLRN 148 (332)
T ss_dssp TTCCEEECCSSCC-----CEECGGGSTTCTTCCEEECCSSCCCS-CCS--SCCTTCCEEECCSSCCCCC-CSGGGSSCSS
T ss_pred CCCcEEECCCCcc-----CccCHhHhhCcCCCCEEECCCCcCCc-cCc--cccccCCEEECCCCccCcc-CHhHhCCCcc
Confidence 4566666544433 11223344556666666666655442 111 1125666666666655211 0112345666
Q ss_pred CcEEEecccCCC----cccccccCCCCceEEecccccccceeee-cCcCcceEeccCceeeccHHHHHHHcCCCcccEEe
Q 040471 200 LEDFEISACWGL----KNLCVSKAHKLKKLAIYTFYKDIGIVEI-VVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLL 274 (340)
Q Consensus 200 L~~L~l~~c~~~----~~~~~~~~~~L~~L~i~~~~~~~~~~~~-~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~ 274 (340)
|+.|+++++..- ....+..+ +|+.|+++++. +..+.. ..++|+.+ .+.++.+++... ..+.++++|++|+
T Consensus 149 L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~--l~~l~~~~~~~L~~L-~l~~n~i~~~~~-~~l~~l~~L~~L~ 223 (332)
T 2ft3_A 149 MNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK--LTGIPKDLPETLNEL-HLDHNKIQAIEL-EDLLRYSKLYRLG 223 (332)
T ss_dssp CCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB--CSSCCSSSCSSCSCC-BCCSSCCCCCCT-TSSTTCTTCSCCB
T ss_pred CCEEECCCCccccCCCCcccccCC-ccCEEECcCCC--CCccCccccCCCCEE-ECCCCcCCccCH-HHhcCCCCCCEEE
Confidence 666666665331 11122222 66666666654 111111 12566666 666666554322 1256789999999
Q ss_pred cccCCCCccccc----ccccccEEEeecCcchhhh---ccCCCCeeEEEEeccCCCC
Q 040471 275 LRFCRLPEKVKI----SSNQLKNLHFNSCENLKAI---DTDTPNLLSFTFSYDFNPI 324 (340)
Q Consensus 275 l~~c~~i~~~~~----~~~~L~~L~l~~c~~l~~~---~~~~p~L~~L~~~~~~~~~ 324 (340)
+++|. ++.+.. .+++|++|+++++.- ..+ ....++|+.|++.++....
T Consensus 224 L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l-~~lp~~l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 224 LGHNQ-IRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp CCSSC-CCCCCTTGGGGCTTCCEEECCSSCC-CBCCTTGGGCTTCCEEECCSSCCCB
T ss_pred CCCCc-CCcCChhHhhCCCCCCEEECCCCcC-eecChhhhcCccCCEEECCCCCCCc
Confidence 99875 433332 368999999998753 222 2456899999999976654
No 96
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.88 E-value=3e-09 Score=82.58 Aligned_cols=127 Identities=20% Similarity=0.204 Sum_probs=91.3
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS 199 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 199 (340)
+++++|++..+.. ....+|..+..+++|+.|++++|.+... .....+++|++|+++++.++.. +......+++
T Consensus 17 ~~l~~L~l~~n~l----~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~ 89 (149)
T 2je0_A 17 SDVKELVLDNSRS----NEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPN 89 (149)
T ss_dssp GGCSEEECTTCBC----BTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSC-THHHHHHCTT
T ss_pred ccCeEEEccCCcC----ChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccch-HHHHhhhCCC
Confidence 5788888876655 2246777777899999999999987653 4566789999999999988432 4556677999
Q ss_pred CcEEEecccCCCcc---cccccCCCCceEEecccccccceeeecCcCcceEeccCceeeccH--HHHHHHcCCCcccEEe
Q 040471 200 LEDFEISACWGLKN---LCVSKAHKLKKLAIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDE--EFDRFISKFPLLEDLL 274 (340)
Q Consensus 200 L~~L~l~~c~~~~~---~~~~~~~~L~~L~i~~~~~~~~~~~~~~p~L~~ll~l~~~~i~~~--~~~~l~~~~~~L~~L~ 274 (340)
|++|++++|.--.. -.+..+++|++|+++++. +++. .....+..+++|++|+
T Consensus 90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-----------------------l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-----------------------VTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-----------------------GGGSTTHHHHHHHHCTTCCEET
T ss_pred CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-----------------------ccchHHHHHHHHHHCCCccccc
Confidence 99999998853221 235567889999888776 2111 1123456688888888
Q ss_pred cc
Q 040471 275 LR 276 (340)
Q Consensus 275 l~ 276 (340)
++
T Consensus 147 l~ 148 (149)
T 2je0_A 147 GY 148 (149)
T ss_dssp TB
T ss_pred CC
Confidence 75
No 97
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.88 E-value=3.3e-09 Score=93.83 Aligned_cols=191 Identities=12% Similarity=0.081 Sum_probs=124.9
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChH-HHHHHHhcCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQ-MFQKLTNECP 198 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~l~~l~~~~p 198 (340)
+++++|++..+.. ..+|..++ ++|++|+++++.+..........+++|++|++.++.++.. .....+..+
T Consensus 102 ~~L~~L~L~~n~l------~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l- 172 (332)
T 2ft3_A 102 RKLQKLYISKNHL------VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL- 172 (332)
T ss_dssp TTCCEEECCSSCC------CSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-
T ss_pred CCCCEEECCCCcC------CccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-
Confidence 6899999876654 36666555 7899999999987653333467799999999999887432 112222333
Q ss_pred CCcEEEecccCCCcccccccCCCCceEEecccc-cccc-eeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecc
Q 040471 199 SLEDFEISACWGLKNLCVSKAHKLKKLAIYTFY-KDIG-IVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLR 276 (340)
Q Consensus 199 ~L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~-~~~~-~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~ 276 (340)
+|+.|+++++.- ..+...-.++|+.|+++++. .... .....+++|+.| .+.++.+++... ..+..+++|++|+++
T Consensus 173 ~L~~L~l~~n~l-~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L-~L~~N~l~~~~~-~~~~~l~~L~~L~L~ 249 (332)
T 2ft3_A 173 KLNYLRISEAKL-TGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRL-GLGHNQIRMIEN-GSLSFLPTLRELHLD 249 (332)
T ss_dssp CCSCCBCCSSBC-SSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCC-BCCSSCCCCCCT-TGGGGCTTCCEEECC
T ss_pred ccCEEECcCCCC-CccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEE-ECCCCcCCcCCh-hHhhCCCCCCEEECC
Confidence 899999988743 22322223789999998876 2221 112256778777 777766654321 124678999999999
Q ss_pred cCCCCccccc---ccccccEEEeecCcch----hhhc-----cCCCCeeEEEEeccCCC
Q 040471 277 FCRLPEKVKI---SSNQLKNLHFNSCENL----KAID-----TDTPNLLSFTFSYDFNP 323 (340)
Q Consensus 277 ~c~~i~~~~~---~~~~L~~L~l~~c~~l----~~~~-----~~~p~L~~L~~~~~~~~ 323 (340)
+|. ++.++. .+++|++|+++++.-- ..+. ...++|+.+++.|+...
T Consensus 250 ~N~-l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 250 NNK-LSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp SSC-CCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CCc-CeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 775 445543 3588999999886431 1111 11467889999987654
No 98
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.87 E-value=7e-09 Score=95.83 Aligned_cols=52 Identities=21% Similarity=0.126 Sum_probs=24.7
Q ss_pred CCcccEEecccCCCCcccccccccccEEEeecCcchhhhccCCCCeeEEEEecc
Q 040471 267 FPLLEDLLLRFCRLPEKVKISSNQLKNLHFNSCENLKAIDTDTPNLLSFTFSYD 320 (340)
Q Consensus 267 ~~~L~~L~l~~c~~i~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~~~~~ 320 (340)
.++|++|++++|. ++.++...++|++|++++|.- ..+....++|+.|++.++
T Consensus 256 ~~~L~~L~l~~N~-l~~l~~~~~~L~~L~ls~N~l-~~l~~~~~~L~~L~l~~N 307 (454)
T 1jl5_A 256 PPSLEALNVRDNY-LTDLPELPQSLTFLDVSENIF-SGLSELPPNLYYLNASSN 307 (454)
T ss_dssp CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCC-SEESCCCTTCCEEECCSS
T ss_pred ccccCEEECCCCc-ccccCcccCcCCEEECcCCcc-CcccCcCCcCCEEECcCC
Confidence 3556666666543 333333345666666665532 222222244555555443
No 99
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.87 E-value=6.7e-09 Score=90.10 Aligned_cols=186 Identities=9% Similarity=-0.009 Sum_probs=122.8
Q ss_pred ccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcccccccCCCCce
Q 040471 145 IFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKK 224 (340)
Q Consensus 145 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~~L~~ 224 (340)
+..+++++.++++++.+... + ..-.++++.|+++++.++.-.. ..+..+++|+.|+++++.--..-....+++|+.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~i--p-~~~~~~l~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTAL--P-PDLPKDTTILHLSENLLYTFSL-ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSC--C-SCCCTTCCEEECTTSCCSEEEG-GGGTTCTTCCEEECTTSCCCEEECCSCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcC--C-CCCCCCCCEEEcCCCcCCccCH-HHhhcCCCCCEEECCCCccCcccCCCCCCcCCE
Confidence 45578899999998776541 1 1124789999999998732211 235678999999999975322112356799999
Q ss_pred EEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCccccc----ccccccEEEeecC
Q 040471 225 LAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKI----SSNQLKNLHFNSC 299 (340)
Q Consensus 225 L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~----~~~~L~~L~l~~c 299 (340)
|+++++. ..+.......++|+.| .+.++.++.-. ...+.++++|++|++++|. ++.++. ..++|+.|+++++
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L-~l~~N~l~~l~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVL-DVSFNRLTSLP-LGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEE-ECCSSCCCCCC-SSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS
T ss_pred EECCCCcCCcCchhhccCCCCCEE-ECCCCcCcccC-HHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCC
Confidence 9999887 2222223357888888 77776665321 1235678999999999875 444433 3589999999987
Q ss_pred cch---hhhccCCCCeeEEEEeccCCCC-cceeccccccccc
Q 040471 300 ENL---KAIDTDTPNLLSFTFSYDFNPI-PTIAMNALSMETL 337 (340)
Q Consensus 300 ~~l---~~~~~~~p~L~~L~~~~~~~~~-~~~~~~~~~~~~l 337 (340)
.-- ..+....++|+.|++.++.... |...+..++++.|
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l 200 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFA 200 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEE
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeE
Confidence 532 1222346899999999977654 3333333344443
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.85 E-value=3.5e-09 Score=89.81 Aligned_cols=155 Identities=15% Similarity=0.061 Sum_probs=82.5
Q ss_pred ccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCc--cccc
Q 040471 139 CILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLK--NLCV 216 (340)
Q Consensus 139 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~--~~~~ 216 (340)
..+|..+. ++|+.|+++++.+..........+++|++|+++++.++.- ....+..+++|++|+++++.--. .-.+
T Consensus 27 ~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 103 (251)
T 3m19_A 27 DSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQLASLPLGVF 103 (251)
T ss_dssp SSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred cccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCcccccChhHh
Confidence 44554433 5677788877766543333455677788888877766321 11223557777788777764321 1123
Q ss_pred ccCCCCceEEecccc-ccccee-eecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCccccc----cccc
Q 040471 217 SKAHKLKKLAIYTFY-KDIGIV-EIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKI----SSNQ 290 (340)
Q Consensus 217 ~~~~~L~~L~i~~~~-~~~~~~-~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~----~~~~ 290 (340)
..+++|+.|+++++. .....- ...+++|+.| .+.++.++.-.. ..+.++++|++|+++++. ++.++. .+++
T Consensus 104 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~ 180 (251)
T 3m19_A 104 DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL-RLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGK 180 (251)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-ECCSSCCCCCCT-TTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTT
T ss_pred cccCCCCEEEcCCCcCCCcChhHhccCCcccEE-ECcCCcCCccCH-HHcCcCcCCCEEECCCCc-CCccCHHHHhCCCC
Confidence 456777777777665 111111 1134455555 444444332111 124456777777777654 333222 2466
Q ss_pred ccEEEeecC
Q 040471 291 LKNLHFNSC 299 (340)
Q Consensus 291 L~~L~l~~c 299 (340)
|+.|++.++
T Consensus 181 L~~L~l~~N 189 (251)
T 3m19_A 181 LQTITLFGN 189 (251)
T ss_dssp CCEEECCSC
T ss_pred CCEEEeeCC
Confidence 777776654
No 101
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.84 E-value=3e-08 Score=94.15 Aligned_cols=166 Identities=13% Similarity=0.036 Sum_probs=106.4
Q ss_pred CCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCc--cc--ccccCCCCce
Q 040471 149 KSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLK--NL--CVSKAHKLKK 224 (340)
Q Consensus 149 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~--~~--~~~~~~~L~~ 224 (340)
.+|+.|+++++.+.... ....+++|++|+++++.+++... ..+..+++|+.|+++++.--. .+ .+..+++|+.
T Consensus 331 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~ 407 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVF-QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLET 407 (562)
T ss_dssp CCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTT-TTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCE
T ss_pred CcceEEEccCCCccccc--CccCCCCceEEECCCCccccchh-hhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCE
Confidence 34666666666543311 12567889999998888744222 224678889999998874321 21 2456788999
Q ss_pred EEecccc-cc-cc-eeeecCcCcceEeccCceeeccHHHHHHHcCC-CcccEEecccCCCCccccc---ccccccEEEee
Q 040471 225 LAIYTFY-KD-IG-IVEIVVPSLQQQLMLTSVWFMDEEFDRFISKF-PLLEDLLLRFCRLPEKVKI---SSNQLKNLHFN 297 (340)
Q Consensus 225 L~i~~~~-~~-~~-~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~-~~L~~L~l~~c~~i~~~~~---~~~~L~~L~l~ 297 (340)
|+++++. .. .. ......++|+.+ .++++.+++..+ ..+ ++|++|++++|. ++.++. .+++|++|+++
T Consensus 408 L~l~~N~l~~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~----~~l~~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~ 481 (562)
T 3a79_B 408 LDVSLNSLNSHAYDRTCAWAESILVL-NLSSNMLTGSVF----RCLPPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVA 481 (562)
T ss_dssp EECTTSCCBSCCSSCCCCCCTTCCEE-ECCSSCCCGGGG----SSCCTTCSEEECCSSC-CCCCCTTTTSSCCCSEEECC
T ss_pred EECCCCcCCCccChhhhcCcccCCEE-ECCCCCCCcchh----hhhcCcCCEEECCCCc-CcccChhhcCCCCCCEEECC
Confidence 9988876 11 21 123356778887 777777765332 334 689999999774 554433 35889999998
Q ss_pred cCcchhhh----ccCCCCeeEEEEeccCCCC
Q 040471 298 SCENLKAI----DTDTPNLLSFTFSYDFNPI 324 (340)
Q Consensus 298 ~c~~l~~~----~~~~p~L~~L~~~~~~~~~ 324 (340)
++.- ..+ ....++|+.|++.++...+
T Consensus 482 ~N~l-~~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 482 SNQL-KSVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp SSCC-CCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred CCCC-CCCCHHHHhcCCCCCEEEecCCCcCC
Confidence 8753 222 2345889999998877664
No 102
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.79 E-value=3.5e-08 Score=91.17 Aligned_cols=55 Identities=11% Similarity=0.056 Sum_probs=29.4
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEee
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYI 185 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 185 (340)
.++++|++..+.. ..+| .+..+++|++|+++++.+.. . ....++|++|+++++.+
T Consensus 131 ~~L~~L~L~~n~l------~~lp-~~~~l~~L~~L~l~~N~l~~-l---p~~~~~L~~L~L~~n~l 185 (454)
T 1jl5_A 131 PLLEYLGVSNNQL------EKLP-ELQNSSFLKIIDVDNNSLKK-L---PDLPPSLEFIAAGNNQL 185 (454)
T ss_dssp TTCCEEECCSSCC------SSCC-CCTTCTTCCEEECCSSCCSC-C---CCCCTTCCEEECCSSCC
T ss_pred CCCCEEECcCCCC------CCCc-ccCCCCCCCEEECCCCcCcc-c---CCCcccccEEECcCCcC
Confidence 4677777765543 2355 35566677777777665432 1 11123555555555544
No 103
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.77 E-value=5.5e-08 Score=86.82 Aligned_cols=155 Identities=13% Similarity=0.063 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHHhhhccCcccceEEEEEeccCcCCChhhHHHHHHHH-HHcCccEEEEEeecCC-C---CCccccCCccc
Q 040471 71 KKFMAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAPLLDKWIGLA-VDNGIKDLVLMVHNMT-Q---EDTVCILPQTI 145 (340)
Q Consensus 71 ~~~~~~v~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~l~~~-~~~~l~~L~l~~~~~~-~---~~~~~~l~~~~ 145 (340)
..+.+.+.+++ .......++++.+..-..........+..+...+ ..++|+.|.+...... . ......+...+
T Consensus 91 ~~~~~~~~~fl--~~~~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll 168 (362)
T 2ra8_A 91 EEGVNLMDKIL--KDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVL 168 (362)
T ss_dssp HTTCCHHHHHH--HCTTGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHH
T ss_pred ccHHHHHHHHh--cCCCchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHH
Confidence 34445566666 2233356788887643210001111333444322 2379999988432110 0 00012355556
Q ss_pred cCCCCccEEEeecee-CCCCCCcccccCcccceEecceEeeChHHHHHHHh-cCCCCcEEEecccCC-------Cccc--
Q 040471 146 FSAKSMATLSLFGCR-MEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTN-ECPSLEDFEISACWG-------LKNL-- 214 (340)
Q Consensus 146 ~~~~~L~~L~L~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~-~~p~L~~L~l~~c~~-------~~~~-- 214 (340)
..+++|+.|+|+++. +.. +. ...++|++|.+..+.++.+.+..+.. .+|+|++|+|..+.+ +..+
T Consensus 169 ~~~P~L~~L~L~g~~~l~l---~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSI---GK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HTCTTCCEEEEECCBTCBC---CS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred hcCCCCcEEEEeCCCCcee---cc-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 678999999999873 221 11 24899999999998888888888764 799999999864211 2111
Q ss_pred --ccccCCCCceEEecccc
Q 040471 215 --CVSKAHKLKKLAIYTFY 231 (340)
Q Consensus 215 --~~~~~~~L~~L~i~~~~ 231 (340)
....+|+|+.|.+.+|.
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp GSCTTTCTTCCEEEEESCT
T ss_pred HHhcCCCCCcCEEeCCCCC
Confidence 11246888888887765
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.75 E-value=3.1e-08 Score=84.61 Aligned_cols=143 Identities=12% Similarity=0.056 Sum_probs=79.6
Q ss_pred HcCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471 119 DNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP 198 (340)
Q Consensus 119 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p 198 (340)
..+++.|++..+.. ..++ .+..+++|+.|++++|.+... +....+++|+.|+++++.++. +..+ .. +
T Consensus 40 l~~L~~L~l~~n~i------~~l~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~L~~N~l~~--l~~~-~~-~ 106 (263)
T 1xeu_A 40 LSGVQNFNGDNSNI------QSLA-GMQFFTNLKELHLSHNQISDL--SPLKDLTKLEELSVNRNRLKN--LNGI-PS-A 106 (263)
T ss_dssp HTTCSEEECTTSCC------CCCT-TGGGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECCSSCCSC--CTTC-CC-S
T ss_pred cCcCcEEECcCCCc------ccch-HHhhCCCCCEEECCCCccCCC--hhhccCCCCCEEECCCCccCC--cCcc-cc-C
Confidence 36777777755543 2344 455677788888877776542 125567777888877777622 1111 11 7
Q ss_pred CCcEEEecccCCCcccccccCCCCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEeccc
Q 040471 199 SLEDFEISACWGLKNLCVSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRF 277 (340)
Q Consensus 199 ~L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~ 277 (340)
+|+.|++++|.--..-.+..+++|+.|+++++. .... ....+++|+.| .+.++.+++. ..+..+++|+.|++++
T Consensus 107 ~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L-~L~~N~i~~~---~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 107 CLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVL-DLHGNEITNT---GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp SCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEE-ECTTSCCCBC---TTSTTCCCCCEEEEEE
T ss_pred cccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEE-ECCCCcCcch---HHhccCCCCCEEeCCC
Confidence 777777777633222234556777777777665 1111 11134555555 5555544443 2344555566666554
Q ss_pred CC
Q 040471 278 CR 279 (340)
Q Consensus 278 c~ 279 (340)
+.
T Consensus 182 N~ 183 (263)
T 1xeu_A 182 QK 183 (263)
T ss_dssp EE
T ss_pred Cc
Confidence 43
No 105
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.74 E-value=4.8e-09 Score=81.40 Aligned_cols=123 Identities=20% Similarity=0.098 Sum_probs=69.9
Q ss_pred CCCccEEEeeceeCC-CCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccc--ccccCCCCce
Q 040471 148 AKSMATLSLFGCRME-QPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNL--CVSKAHKLKK 224 (340)
Q Consensus 148 ~~~L~~L~L~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~--~~~~~~~L~~ 224 (340)
.++|+.|++++|.+. .........+++|+.|+++++.++.- ..+..+++|+.|++++|.-...+ .+..+++|+.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 367888888888765 22333445678888888887766322 33455677777777766432211 1223556666
Q ss_pred EEecccccccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCccccc-------ccccccEEEee
Q 040471 225 LAIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKI-------SSNQLKNLHFN 297 (340)
Q Consensus 225 L~i~~~~~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~-------~~~~L~~L~l~ 297 (340)
|+++++. +++-.....+.++++|++|++++|. ++..+. .+++|+.|+++
T Consensus 93 L~ls~N~-----------------------i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNK-----------------------IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSC-----------------------CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCc-----------------------CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 6665554 3332222345667777888877664 333322 14666666553
No 106
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.73 E-value=4.1e-09 Score=83.60 Aligned_cols=81 Identities=21% Similarity=0.199 Sum_probs=45.9
Q ss_pred CCCccEEEeeceeCC-CCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccc--ccccCCCCce
Q 040471 148 AKSMATLSLFGCRME-QPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNL--CVSKAHKLKK 224 (340)
Q Consensus 148 ~~~L~~L~L~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~--~~~~~~~L~~ 224 (340)
.++|+.|++++|.+. .........+++|+.|++.++.++.- ..+..+++|+.|++++|.-...+ .+..+++|+.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 367888888887765 22223345677788888777766322 33455666777776666432211 1122455555
Q ss_pred EEecccc
Q 040471 225 LAIYTFY 231 (340)
Q Consensus 225 L~i~~~~ 231 (340)
|+++++.
T Consensus 100 L~Ls~N~ 106 (168)
T 2ell_A 100 LNLSGNK 106 (168)
T ss_dssp EECBSSS
T ss_pred EeccCCc
Confidence 5555543
No 107
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.71 E-value=8.4e-09 Score=87.48 Aligned_cols=151 Identities=17% Similarity=0.106 Sum_probs=96.1
Q ss_pred cCccEEEEEeecCCCCCccccC-CccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCIL-PQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP 198 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p 198 (340)
.+++.|++..+.. ..+ +..+..+++|++|+++++.+..........+++|++|+++++.++.- ....+..++
T Consensus 35 ~~l~~L~L~~n~l------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~ 107 (251)
T 3m19_A 35 ADTEKLDLQSTGL------ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL-PLGVFDHLT 107 (251)
T ss_dssp TTCCEEECTTSCC------CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCT
T ss_pred CCCCEEEccCCCc------CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc-ChhHhcccC
Confidence 3667777755443 223 33455678888888888877653333456788888888888877321 112345678
Q ss_pred CCcEEEecccCCCccc---ccccCCCCceEEecccc-cccce-eeecCcCcceEeccCceeeccHHHHHHHcCCCcccEE
Q 040471 199 SLEDFEISACWGLKNL---CVSKAHKLKKLAIYTFY-KDIGI-VEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDL 273 (340)
Q Consensus 199 ~L~~L~l~~c~~~~~~---~~~~~~~L~~L~i~~~~-~~~~~-~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L 273 (340)
+|++|+++++.- ..+ .+..+++|+.|+++++. ..... ....+++|+.| .+.++.++.... ..+..+++|++|
T Consensus 108 ~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~-~~~~~l~~L~~L 184 (251)
T 3m19_A 108 QLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL-SLSTNQLQSVPH-GAFDRLGKLQTI 184 (251)
T ss_dssp TCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-ECCSSCCSCCCT-TTTTTCTTCCEE
T ss_pred CCCEEEcCCCcC-CCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEE-ECCCCcCCccCH-HHHhCCCCCCEE
Confidence 888888888732 222 23457888888888876 22221 11245777777 666666553221 235678999999
Q ss_pred ecccCCC
Q 040471 274 LLRFCRL 280 (340)
Q Consensus 274 ~l~~c~~ 280 (340)
+++++..
T Consensus 185 ~l~~N~~ 191 (251)
T 3m19_A 185 TLFGNQF 191 (251)
T ss_dssp ECCSCCB
T ss_pred EeeCCce
Confidence 9998764
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.71 E-value=1.2e-08 Score=87.22 Aligned_cols=144 Identities=12% Similarity=0.038 Sum_probs=101.4
Q ss_pred ccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcccccccCCCCce
Q 040471 145 IFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKK 224 (340)
Q Consensus 145 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~~L~~ 224 (340)
+..+++|+.|+++++.+... +....+++|+.|+++++.+++-.- +..+++|+.|+++++.--..-.+.. ++|+.
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~ 110 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSL--AGMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKNLNGIPS-ACLSR 110 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCSCCTTCCC-SSCCE
T ss_pred hhhcCcCcEEECcCCCcccc--hHHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCccCCcCcccc-CcccE
Confidence 45578899999999877642 356678999999999988832211 6788999999999884322112333 88999
Q ss_pred EEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCcccc--cccccccEEEeecCc
Q 040471 225 LAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVK--ISSNQLKNLHFNSCE 300 (340)
Q Consensus 225 L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~--~~~~~L~~L~l~~c~ 300 (340)
|+++++. ..... ...+++|+.| .++++.+++-. .+..+++|++|++++|. +++.. ..+++|+.|+++++.
T Consensus 111 L~L~~N~l~~~~~-l~~l~~L~~L-~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 111 LFLDNNELRDTDS-LIHLKNLEIL-SIRNNKLKSIV---MLGFLSKLEVLDLHGNE-ITNTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp EECCSSCCSBSGG-GTTCTTCCEE-ECTTSCCCBCG---GGGGCTTCCEEECTTSC-CCBCTTSTTCCCCCEEEEEEEE
T ss_pred EEccCCccCCChh-hcCcccccEE-ECCCCcCCCCh---HHccCCCCCEEECCCCc-CcchHHhccCCCCCEEeCCCCc
Confidence 9999886 22221 2257788887 77877776642 36778999999999875 44332 236889999998764
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.65 E-value=8.8e-08 Score=90.60 Aligned_cols=176 Identities=12% Similarity=0.022 Sum_probs=104.5
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS 199 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 199 (340)
.+++.|++..+.. ..+|..++ ++|++|+|++|.+.. . + ..+++|++|+++++.++. +.. + ..+
T Consensus 59 ~~L~~L~Ls~n~L------~~lp~~l~--~~L~~L~Ls~N~l~~-i-p--~~l~~L~~L~Ls~N~l~~--ip~-l--~~~ 121 (571)
T 3cvr_A 59 NQFSELQLNRLNL------SSLPDNLP--PQITVLEITQNALIS-L-P--ELPASLEYLDACDNRLST--LPE-L--PAS 121 (571)
T ss_dssp TTCSEEECCSSCC------SCCCSCCC--TTCSEEECCSSCCSC-C-C--CCCTTCCEEECCSSCCSC--CCC-C--CTT
T ss_pred CCccEEEeCCCCC------CccCHhHc--CCCCEEECcCCCCcc-c-c--cccCCCCEEEccCCCCCC--cch-h--hcC
Confidence 4788888765544 33665543 678888888877663 2 2 457888888888877632 111 1 227
Q ss_pred CcEEEecccCCCcccccccCCCCceEEecccccccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCC
Q 040471 200 LEDFEISACWGLKNLCVSKAHKLKKLAIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCR 279 (340)
Q Consensus 200 L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~ 279 (340)
|+.|+++++.- ..+.. .+++|+.|+++++. +..+....++|+.| .+.++.+++ +.. +. ++|++|++++|.
T Consensus 122 L~~L~Ls~N~l-~~lp~-~l~~L~~L~Ls~N~--l~~lp~~l~~L~~L-~Ls~N~L~~--lp~-l~--~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 122 LKHLDVDNNQL-TMLPE-LPALLEYINADNNQ--LTMLPELPTSLEVL-SVRNNQLTF--LPE-LP--ESLEALDVSTNL 191 (571)
T ss_dssp CCEEECCSSCC-SCCCC-CCTTCCEEECCSSC--CSCCCCCCTTCCEE-ECCSSCCSC--CCC-CC--TTCCEEECCSSC
T ss_pred CCEEECCCCcC-CCCCC-cCccccEEeCCCCc--cCcCCCcCCCcCEE-ECCCCCCCC--cch-hh--CCCCEEECcCCC
Confidence 88888887632 22322 46788888888776 11122245677776 666666554 111 22 788888888664
Q ss_pred CCcccccccccc-------cEEEeecCcch---hhhccCCCCeeEEEEeccCCCC
Q 040471 280 LPEKVKISSNQL-------KNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNPI 324 (340)
Q Consensus 280 ~i~~~~~~~~~L-------~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~~ 324 (340)
++.++.-.++| +.|+++++.-- ..+ ...++|+.|++.++....
T Consensus 192 -L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l-~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 192 -LESLPAVPVRNHHSEETEIFFRCRENRITHIPENI-LSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp -CSSCCCCC--------CCEEEECCSSCCCCCCGGG-GGSCTTEEEECCSSSCCH
T ss_pred -CCchhhHHHhhhcccccceEEecCCCcceecCHHH-hcCCCCCEEEeeCCcCCC
Confidence 44444422356 88888776421 112 236788888888866643
No 110
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.65 E-value=2.6e-08 Score=88.76 Aligned_cols=188 Identities=11% Similarity=0.040 Sum_probs=89.0
Q ss_pred cCccEEEEEeecCCCCCccccCCcc-ccCCCCccEEEeeceeCCCCCC-cccccCcccceEecce-EeeChHHHHHHHhc
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQT-IFSAKSMATLSLFGCRMEQPSD-TTTIRLDSLKKLTLEN-VYINDQMFQKLTNE 196 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~ 196 (340)
.++++|++..+.. ..+|.. +..+++|++|+|+++.+..... ..+.++++|+.+...+ +.+..- ....+..
T Consensus 30 ~~l~~L~Ls~N~i------~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l-~~~~f~~ 102 (350)
T 4ay9_X 30 RNAIELRFVLTKL------RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI-NPEAFQN 102 (350)
T ss_dssp TTCSEEEEESCCC------SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE-CTTSBCC
T ss_pred CCCCEEEccCCcC------CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc-Cchhhhh
Confidence 4667777665543 345543 3446777777777765422111 1233455555433322 222100 0112345
Q ss_pred CCCCcEEEecccCCC--cccccccCCCCceEEecccccccceee----ecCc-CcceEeccCceeeccHHHHHHHcCCCc
Q 040471 197 CPSLEDFEISACWGL--KNLCVSKAHKLKKLAIYTFYKDIGIVE----IVVP-SLQQQLMLTSVWFMDEEFDRFISKFPL 269 (340)
Q Consensus 197 ~p~L~~L~l~~c~~~--~~~~~~~~~~L~~L~i~~~~~~~~~~~----~~~p-~L~~ll~l~~~~i~~~~~~~l~~~~~~ 269 (340)
+++|+.|+++++.-. .........++..|++.++. .+..+. ...+ .++.+ .+.+..++.-. .-....++
T Consensus 103 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~-~i~~l~~~~f~~~~~~l~~L-~L~~N~i~~i~--~~~f~~~~ 178 (350)
T 4ay9_X 103 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI-NIHTIERNSFVGLSFESVIL-WLNKNGIQEIH--NSAFNGTQ 178 (350)
T ss_dssp CTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCT-TCCEECTTSSTTSBSSCEEE-ECCSSCCCEEC--TTSSTTEE
T ss_pred ccccccccccccccccCCchhhcccchhhhhhhcccc-ccccccccchhhcchhhhhh-ccccccccCCC--hhhccccc
Confidence 677777777665321 11112223455555554433 111111 1122 23333 55554443211 01113456
Q ss_pred ccEEecccCCCCccccc----ccccccEEEeecCcchhhhccC-CCCeeEEEEec
Q 040471 270 LEDLLLRFCRLPEKVKI----SSNQLKNLHFNSCENLKAIDTD-TPNLLSFTFSY 319 (340)
Q Consensus 270 L~~L~l~~c~~i~~~~~----~~~~L~~L~l~~c~~l~~~~~~-~p~L~~L~~~~ 319 (340)
|++|.+.++..++.++. .+++|+.|+++++. +..+... ..+|++|...+
T Consensus 179 L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l~ 232 (350)
T 4ay9_X 179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARS 232 (350)
T ss_dssp EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSSSCTTCCEEECTT
T ss_pred hhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChhhhccchHhhhcc
Confidence 77777776666666553 24677888877763 3444332 35666666554
No 111
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.64 E-value=1e-08 Score=92.16 Aligned_cols=159 Identities=15% Similarity=0.166 Sum_probs=94.7
Q ss_pred HHHcCccEEEEEeecCCCCCccccCCccccC-CCCccEEEeeceeCCCCCC-cccccCcccceEecceEeeChHHHHHHH
Q 040471 117 AVDNGIKDLVLMVHNMTQEDTVCILPQTIFS-AKSMATLSLFGCRMEQPSD-TTTIRLDSLKKLTLENVYINDQMFQKLT 194 (340)
Q Consensus 117 ~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~ 194 (340)
.....+++|++..+... ......+...+.. +++|+.|+|++|.++.... .....+++|+.|+|+++.+++.....+.
T Consensus 69 ~~~~~L~~L~Ls~n~l~-~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 69 EVLSSLRQLNLAGVRMT-PVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp HHHTTCCEEECTTSCCC-HHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred HHHhhCCEEEecCCCCC-HHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence 34467787777554431 0012223333332 3578888888776643211 1223456778888888777666555543
Q ss_pred ----hcCCCCcEEEecccCCCccc-------ccccCCCCceEEecccccccceeeecCcCcceEeccCceeeccHH---H
Q 040471 195 ----NECPSLEDFEISACWGLKNL-------CVSKAHKLKKLAIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDEE---F 260 (340)
Q Consensus 195 ----~~~p~L~~L~l~~c~~~~~~-------~~~~~~~L~~L~i~~~~~~~~~~~~~~p~L~~ll~l~~~~i~~~~---~ 260 (340)
..+++|++|++++|. ++.. .+..+++|++|+++++. +++.+ +
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-----------------------l~~~g~~~L 203 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-----------------------LGDEGLELL 203 (372)
T ss_dssp HHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-----------------------CHHHHHHHH
T ss_pred HHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-----------------------CCcHHHHHH
Confidence 246777777777773 2221 11234666666666554 55554 3
Q ss_pred HHHHcCCCcccEEecccCCCCccccc--------ccccccEEEeecCcc
Q 040471 261 DRFISKFPLLEDLLLRFCRLPEKVKI--------SSNQLKNLHFNSCEN 301 (340)
Q Consensus 261 ~~l~~~~~~L~~L~l~~c~~i~~~~~--------~~~~L~~L~l~~c~~ 301 (340)
...+...++|++|++++|. +++.+. .+++|++|++++|.-
T Consensus 204 ~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 204 AAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 4456778899999999875 554332 258899999998853
No 112
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.62 E-value=5.5e-09 Score=85.28 Aligned_cols=86 Identities=20% Similarity=0.185 Sum_probs=40.2
Q ss_pred CCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcccccccCC
Q 040471 141 LPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAH 220 (340)
Q Consensus 141 l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~ 220 (340)
+|..+..+++|+.|+++++.+.. . +....+++|+.|+++++.++ .+......+|+|+.|++++|.--..-.+..++
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~-l-~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~ 115 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEK-I-SSLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASLSGIEKLV 115 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESC-C-CCHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEECCCHHHHHHHH
T ss_pred hhHHHhcCCCCCEEECCCCCCcc-c-cccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCcCCcCCccccCC
Confidence 33345555566666666655443 1 23444566666666665552 11222333455555555555221111223344
Q ss_pred CCceEEeccc
Q 040471 221 KLKKLAIYTF 230 (340)
Q Consensus 221 ~L~~L~i~~~ 230 (340)
+|+.|+++++
T Consensus 116 ~L~~L~l~~N 125 (198)
T 1ds9_A 116 NLRVLYMSNN 125 (198)
T ss_dssp HSSEEEESEE
T ss_pred CCCEEECCCC
Confidence 5555555544
No 113
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.59 E-value=2.3e-08 Score=82.12 Aligned_cols=90 Identities=22% Similarity=0.152 Sum_probs=53.4
Q ss_pred ccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCc--cccc
Q 040471 139 CILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLK--NLCV 216 (340)
Q Consensus 139 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~--~~~~ 216 (340)
..+|..+ .++|++|+++++.+..........+++|++|++.++.++.- ....+..+++|++|+++++.--. ...+
T Consensus 20 ~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 96 (208)
T 2o6s_A 20 TSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQSLPNGVF 96 (208)
T ss_dssp SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcCCccCHhHh
Confidence 3444433 35788888888776542222345678888888887766311 11224567788888887763221 1123
Q ss_pred ccCCCCceEEecccc
Q 040471 217 SKAHKLKKLAIYTFY 231 (340)
Q Consensus 217 ~~~~~L~~L~i~~~~ 231 (340)
..+++|+.|+++++.
T Consensus 97 ~~l~~L~~L~L~~N~ 111 (208)
T 2o6s_A 97 DKLTQLKELALNTNQ 111 (208)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred cCccCCCEEEcCCCc
Confidence 456777777777664
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.57 E-value=2.7e-07 Score=87.27 Aligned_cols=169 Identities=13% Similarity=0.023 Sum_probs=112.6
Q ss_pred CCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcccccccCCCCceEEe
Q 040471 148 AKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLAI 227 (340)
Q Consensus 148 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~~L~~L~i 227 (340)
+.+|+.|+++++.+.. .+.. -+++|++|+|+++.++. +. ..+++|+.|++++|. +..+.. -..+|+.|++
T Consensus 58 ~~~L~~L~Ls~n~L~~-lp~~--l~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~~L~~L~L 127 (571)
T 3cvr_A 58 INQFSELQLNRLNLSS-LPDN--LPPQITVLEITQNALIS--LP---ELPASLEYLDACDNR-LSTLPE-LPASLKHLDV 127 (571)
T ss_dssp HTTCSEEECCSSCCSC-CCSC--CCTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSC-CSCCCC-CCTTCCEEEC
T ss_pred cCCccEEEeCCCCCCc-cCHh--HcCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCC-CCCcch-hhcCCCEEEC
Confidence 3589999999988754 2221 25899999999998842 22 568999999999983 332321 1239999999
Q ss_pred cccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCcccccccccccEEEeecCcchhhhc
Q 040471 228 YTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKISSNQLKNLHFNSCENLKAID 306 (340)
Q Consensus 228 ~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~~~L~~L~l~~c~~l~~~~ 306 (340)
+++. ..+.. .+++|+.| .++++.++. +...+++|++|++++|. ++.++.-.++|+.|+++++. +..+.
T Consensus 128 s~N~l~~lp~---~l~~L~~L-~Ls~N~l~~-----lp~~l~~L~~L~Ls~N~-L~~lp~l~~~L~~L~Ls~N~-L~~lp 196 (571)
T 3cvr_A 128 DNNQLTMLPE---LPALLEYI-NADNNQLTM-----LPELPTSLEVLSVRNNQ-LTFLPELPESLEALDVSTNL-LESLP 196 (571)
T ss_dssp CSSCCSCCCC---CCTTCCEE-ECCSSCCSC-----CCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CSSCC
T ss_pred CCCcCCCCCC---cCccccEE-eCCCCccCc-----CCCcCCCcCEEECCCCC-CCCcchhhCCCCEEECcCCC-CCchh
Confidence 9887 23222 67888888 777777654 12267899999999876 44444423899999999874 33333
Q ss_pred cCCCCe-------eEEEEeccCCCC-cceeccccccccc
Q 040471 307 TDTPNL-------LSFTFSYDFNPI-PTIAMNALSMETL 337 (340)
Q Consensus 307 ~~~p~L-------~~L~~~~~~~~~-~~~~~~~~~~~~l 337 (340)
.-.++| +.|++.++.... |...+..++++.|
T Consensus 197 ~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L 235 (571)
T 3cvr_A 197 AVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTI 235 (571)
T ss_dssp CCC--------CCEEEECCSSCCCCCCGGGGGSCTTEEE
T ss_pred hHHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEE
Confidence 322377 999999977664 4333334445444
No 115
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.55 E-value=6e-08 Score=79.64 Aligned_cols=105 Identities=18% Similarity=0.183 Sum_probs=71.2
Q ss_pred cCccEEEEEeecCCCCCccccCCcc-ccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQT-IFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP 198 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p 198 (340)
.++++|++..+.. ..++.. +..+++|++|+++++.+..........+++|++|+++++.++.- ....+..++
T Consensus 28 ~~l~~L~l~~n~l------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~ 100 (208)
T 2o6s_A 28 AQTTYLDLETNSL------KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL-PNGVFDKLT 100 (208)
T ss_dssp TTCSEEECCSSCC------CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCT
T ss_pred CCCcEEEcCCCcc------CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc-CHhHhcCcc
Confidence 3678888766544 344444 45689999999999877643222346789999999998877321 112346789
Q ss_pred CCcEEEecccCCCc--ccccccCCCCceEEecccc
Q 040471 199 SLEDFEISACWGLK--NLCVSKAHKLKKLAIYTFY 231 (340)
Q Consensus 199 ~L~~L~l~~c~~~~--~~~~~~~~~L~~L~i~~~~ 231 (340)
+|++|+++++.--. .-.+..+++|+.|+++++.
T Consensus 101 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (208)
T 2o6s_A 101 QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ 135 (208)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc
Confidence 99999998874321 1124567889999998775
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.51 E-value=1.2e-07 Score=79.22 Aligned_cols=90 Identities=16% Similarity=0.081 Sum_probs=58.1
Q ss_pred cccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccc---
Q 040471 138 VCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNL--- 214 (340)
Q Consensus 138 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~--- 214 (340)
...+|..+. ++|+.|+++++.+..........+++|+.|+|+++.+..- ....+..+++|+.|+++++.- ..+
T Consensus 31 l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L~~L~Ls~N~l-~~l~~~ 106 (229)
T 3e6j_A 31 HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGTNQL-TVLPSA 106 (229)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTT
T ss_pred cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc-ChhhcccCCCcCEEECCCCcC-CccChh
Confidence 345555443 7788888888877653334456778888888888876211 012345678888888887732 222
Q ss_pred ccccCCCCceEEecccc
Q 040471 215 CVSKAHKLKKLAIYTFY 231 (340)
Q Consensus 215 ~~~~~~~L~~L~i~~~~ 231 (340)
.+..+++|+.|+++++.
T Consensus 107 ~~~~l~~L~~L~Ls~N~ 123 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCNK 123 (229)
T ss_dssp TTTTCTTCCEEECCSSC
T ss_pred HhCcchhhCeEeccCCc
Confidence 23456788888888765
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.46 E-value=3.2e-07 Score=76.04 Aligned_cols=91 Identities=11% Similarity=0.076 Sum_probs=54.5
Q ss_pred cccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCC--cccc
Q 040471 138 VCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGL--KNLC 215 (340)
Q Consensus 138 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~--~~~~ 215 (340)
...+|..+. ++|+.|+++++.+..........+++|+.|+|+++.++.-. ...+..+++|++|+++++.-- ..-.
T Consensus 23 l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 99 (220)
T 2v9t_B 23 LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNKITELPKSL 99 (220)
T ss_dssp CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSSCCCCCCTTT
T ss_pred cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCCcCCccCHhH
Confidence 345555443 57888888887765422224456788888888887663211 112456778888888876322 1112
Q ss_pred cccCCCCceEEecccc
Q 040471 216 VSKAHKLKKLAIYTFY 231 (340)
Q Consensus 216 ~~~~~~L~~L~i~~~~ 231 (340)
+..+++|+.|+++++.
T Consensus 100 f~~l~~L~~L~L~~N~ 115 (220)
T 2v9t_B 100 FEGLFSLQLLLLNANK 115 (220)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred ccCCCCCCEEECCCCC
Confidence 3456777777777665
No 118
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.40 E-value=3.6e-07 Score=72.84 Aligned_cols=81 Identities=12% Similarity=0.020 Sum_probs=41.7
Q ss_pred ccCCCCccEEEeeceeCCCCCCccccc-CcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcccc---cccCC
Q 040471 145 IFSAKSMATLSLFGCRMEQPSDTTTIR-LDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLC---VSKAH 220 (340)
Q Consensus 145 ~~~~~~L~~L~L~~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~---~~~~~ 220 (340)
+..+.+|+.|++++|.+.. . +.... .++|+.|+++++.++.- ..+..+++|+.|+++++.- ..+. +..++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i-~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~ 88 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-I-ENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRI-CRIGEGLDQALP 88 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-C-CCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCC-CEECSCHHHHCT
T ss_pred cCCcCCceEEEeeCCCCch-h-HHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcc-cccCcchhhcCC
Confidence 3445666777776665543 1 22222 33666666666655321 1234566666666666532 2221 13456
Q ss_pred CCceEEecccc
Q 040471 221 KLKKLAIYTFY 231 (340)
Q Consensus 221 ~L~~L~i~~~~ 231 (340)
+|+.|+++++.
T Consensus 89 ~L~~L~L~~N~ 99 (176)
T 1a9n_A 89 DLTELILTNNS 99 (176)
T ss_dssp TCCEEECCSCC
T ss_pred CCCEEECCCCc
Confidence 66666666554
No 119
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.38 E-value=1.8e-06 Score=82.65 Aligned_cols=151 Identities=19% Similarity=0.122 Sum_probs=92.7
Q ss_pred cCccEEEEEeecCCCCCccccCCc-cccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQ-TIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP 198 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p 198 (340)
.++++|+++.+.. ..+++ .+..+++|++|+|++|.+..-....+.++++|++|+|+++.++.-. ...+..++
T Consensus 52 ~~~~~LdLs~N~i------~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~-~~~f~~L~ 124 (635)
T 4g8a_A 52 FSTKNLDLSFNPL------RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLS 124 (635)
T ss_dssp TTCCEEECTTSCC------CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-GGGGTTCT
T ss_pred cCCCEEEeeCCCC------CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC-HHHhcCCC
Confidence 3678888866544 44554 4566888999999988765422223567888999999888762211 12356788
Q ss_pred CCcEEEecccCC--CcccccccCCCCceEEecccc-ccc--ceeeecCcCcceEeccCceeec---cHHHHHHHcCCCcc
Q 040471 199 SLEDFEISACWG--LKNLCVSKAHKLKKLAIYTFY-KDI--GIVEIVVPSLQQQLMLTSVWFM---DEEFDRFISKFPLL 270 (340)
Q Consensus 199 ~L~~L~l~~c~~--~~~~~~~~~~~L~~L~i~~~~-~~~--~~~~~~~p~L~~ll~l~~~~i~---~~~~~~l~~~~~~L 270 (340)
+|++|++++|.- +....+..+++|+.|+++++. ... ......+++|+.+ .+.++.++ ...+..+......+
T Consensus 125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~~l~~L~~l~~~~ 203 (635)
T 4g8a_A 125 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL-DLSSNKIQSIYCTDLRVLHQMPLLN 203 (635)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE-ECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhh-cccCccccccccccccchhhhhhhh
Confidence 899999988743 222345677889999988876 111 1222346777777 66655543 23444433333344
Q ss_pred cEEecccC
Q 040471 271 EDLLLRFC 278 (340)
Q Consensus 271 ~~L~l~~c 278 (340)
..++++.+
T Consensus 204 ~~~~ls~n 211 (635)
T 4g8a_A 204 LSLDLSLN 211 (635)
T ss_dssp CEEECTTC
T ss_pred hhhhcccC
Confidence 45666543
No 120
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.37 E-value=1.4e-07 Score=75.36 Aligned_cols=62 Identities=15% Similarity=0.021 Sum_probs=44.5
Q ss_pred ccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcccccccCCCCceEEecccc
Q 040471 168 TTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLAIYTFY 231 (340)
Q Consensus 168 ~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~ 231 (340)
....+++|+.|++.++.++. +..+....|+|+.|+++++.--..-.+..+++|+.|+++++.
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~ 75 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNR 75 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSC
T ss_pred hcCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCc
Confidence 34568899999999988742 233455566999999998743222245567899999998876
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.37 E-value=3e-07 Score=76.26 Aligned_cols=105 Identities=18% Similarity=0.166 Sum_probs=71.8
Q ss_pred cCccEEEEEeecCCCCCccccCCc-cccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQ-TIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP 198 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p 198 (340)
.++++|++..+.. ..++. .+..+++|+.|+|+++.+..........+++|++|+|+++.++. ....++..++
T Consensus 32 ~~l~~L~l~~n~i------~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~ 104 (220)
T 2v9t_B 32 ETITEIRLEQNTI------KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE-LPKSLFEGLF 104 (220)
T ss_dssp TTCCEEECCSSCC------CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCT
T ss_pred cCCCEEECCCCcC------CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc-cCHhHccCCC
Confidence 4678888765544 33443 45568899999999987754333456678999999999988731 1122346789
Q ss_pred CCcEEEecccCCCc--ccccccCCCCceEEecccc
Q 040471 199 SLEDFEISACWGLK--NLCVSKAHKLKKLAIYTFY 231 (340)
Q Consensus 199 ~L~~L~l~~c~~~~--~~~~~~~~~L~~L~i~~~~ 231 (340)
+|+.|+++++.--. .-.+..+++|+.|+++++.
T Consensus 105 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 139 (220)
T 2v9t_B 105 SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK 139 (220)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc
Confidence 99999999874321 2234567888888888775
No 122
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.35 E-value=1.7e-06 Score=77.13 Aligned_cols=133 Identities=17% Similarity=0.125 Sum_probs=76.3
Q ss_pred HHHHHHhcCCCCcEEEecccCCCcccccccCCCCceEEecccccc---cceee-ecCcCcceEeccC--cee-ecc---H
Q 040471 189 MFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLAIYTFYKD---IGIVE-IVVPSLQQQLMLT--SVW-FMD---E 258 (340)
Q Consensus 189 ~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~~~---~~~~~-~~~p~L~~ll~l~--~~~-i~~---~ 258 (340)
.+..++..+|+|++|.+++|.++....+ ..++|++|.+..|.-. ...+. ..+|+|+.| .+. ... ..+ .
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L-~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKL-VLYVGVEDYGFDGDMN 240 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEE-EEECBCGGGTCCSCGG
T ss_pred CHHHHHhcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEE-EEeccccccccchhHH
Confidence 3556677788888888887743322122 3578888888766511 11122 256777777 321 111 111 1
Q ss_pred HHHHHH--cCCCcccEEecccCCCCccc----c--cccccccEEEeecCcch----hhhcc---CCCCeeEEEEeccCCC
Q 040471 259 EFDRFI--SKFPLLEDLLLRFCRLPEKV----K--ISSNQLKNLHFNSCENL----KAIDT---DTPNLLSFTFSYDFNP 323 (340)
Q Consensus 259 ~~~~l~--~~~~~L~~L~l~~c~~i~~~----~--~~~~~L~~L~l~~c~~l----~~~~~---~~p~L~~L~~~~~~~~ 323 (340)
.+..++ ..+|+|++|.+.+|...+.. . ..+|+|++|+++.+.-- ..+.. ..|+|+.|++.++...
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 222223 35899999999877642211 1 13689999999765421 12322 3488999999876554
No 123
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.31 E-value=6.9e-07 Score=85.62 Aligned_cols=151 Identities=11% Similarity=0.024 Sum_probs=77.8
Q ss_pred cCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCC--cccccccCCCCceEEecccccc---cceeeecCcCcc
Q 040471 171 RLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGL--KNLCVSKAHKLKKLAIYTFYKD---IGIVEIVVPSLQ 245 (340)
Q Consensus 171 ~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~--~~~~~~~~~~L~~L~i~~~~~~---~~~~~~~~p~L~ 245 (340)
.+++|+.+++..+......-...+..+++++.++++++..- ..-....++.|+.|+++++... .......+++|+
T Consensus 418 ~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~ 497 (635)
T 4g8a_A 418 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 497 (635)
T ss_dssp TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred ccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccC
Confidence 44555555555444311111112344555666665554321 1112334577777777766411 111122456666
Q ss_pred eEeccCceeeccHHHHHHHcCCCcccEEecccCCCCccccc----ccccccEEEeecCcch----hhhccCCCCeeEEEE
Q 040471 246 QQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKI----SSNQLKNLHFNSCENL----KAIDTDTPNLLSFTF 317 (340)
Q Consensus 246 ~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~----~~~~L~~L~l~~c~~l----~~~~~~~p~L~~L~~ 317 (340)
.| +++++.+++-. ...+.++++|++|++++|. ++.++. .+++|+.|+++++.-. ..+..-.++|+.|++
T Consensus 498 ~L-~Ls~N~L~~l~-~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L 574 (635)
T 4g8a_A 498 FL-DLSQCQLEQLS-PTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 574 (635)
T ss_dssp EE-ECTTSCCCEEC-TTTTTTCTTCCEEECTTSC-CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEEC
T ss_pred EE-ECCCCccCCcC-hHHHcCCCCCCEEECCCCc-CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEe
Confidence 66 66666554321 1224567888888888764 333322 2477888888776432 111111257888888
Q ss_pred eccCCCC
Q 040471 318 SYDFNPI 324 (340)
Q Consensus 318 ~~~~~~~ 324 (340)
.|++..+
T Consensus 575 ~~Np~~C 581 (635)
T 4g8a_A 575 TQNDFAC 581 (635)
T ss_dssp TTCCBCC
T ss_pred eCCCCcc
Confidence 8776654
No 124
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.31 E-value=7.5e-07 Score=73.80 Aligned_cols=81 Identities=15% Similarity=0.101 Sum_probs=43.1
Q ss_pred CccEEEeeceeCCCCCC-cccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCc--ccccccCCCCceEE
Q 040471 150 SMATLSLFGCRMEQPSD-TTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLK--NLCVSKAHKLKKLA 226 (340)
Q Consensus 150 ~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~--~~~~~~~~~L~~L~ 226 (340)
.++.|+++++.+..... .....+++|+.|+|.++.++.-. ...+..+++|++|+++++.-.. .-.+..+++|++|+
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 45667777665543111 12345677777777766552110 1123456677777777653321 11244566777777
Q ss_pred ecccc
Q 040471 227 IYTFY 231 (340)
Q Consensus 227 i~~~~ 231 (340)
++++.
T Consensus 112 Ls~N~ 116 (220)
T 2v70_A 112 LRSNR 116 (220)
T ss_dssp CTTSC
T ss_pred CCCCc
Confidence 76654
No 125
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.31 E-value=3.6e-07 Score=82.01 Aligned_cols=136 Identities=15% Similarity=0.067 Sum_probs=89.1
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCccc-----ccCcccceEecceEeeChHHHHHH-
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTT-----IRLDSLKKLTLENVYINDQMFQKL- 193 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~-----~~~~~L~~L~L~~~~~~~~~l~~l- 193 (340)
.++++|+++.+.. .+..+......+++|++|+|++|.+........ ...++|++|+|++|.+++.+...+
T Consensus 101 ~~L~~L~Ls~n~l----~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~ 176 (372)
T 3un9_A 101 HALDEVNLASCQL----DPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM 176 (372)
T ss_dssp SCEEEEECTTCCC----CHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHH
T ss_pred CCceEEEecCCCC----CHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHH
Confidence 5899999976654 333333333346789999999998754221111 246889999999999976665554
Q ss_pred --HhcCCCCcEEEecccCCCccc-------ccccCCCCceEEecccccccceeeecCcCcceEeccCceeeccHH---HH
Q 040471 194 --TNECPSLEDFEISACWGLKNL-------CVSKAHKLKKLAIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDEE---FD 261 (340)
Q Consensus 194 --~~~~p~L~~L~l~~c~~~~~~-------~~~~~~~L~~L~i~~~~~~~~~~~~~~p~L~~ll~l~~~~i~~~~---~~ 261 (340)
+..+++|++|++++|. +.+. .+...++|+.|++++|. |++.+ +.
T Consensus 177 ~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-----------------------i~~~g~~~l~ 232 (372)
T 3un9_A 177 EGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG-----------------------AGDTAALALA 232 (372)
T ss_dssp HHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC-----------------------CCHHHHHHHH
T ss_pred HHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC-----------------------CCHHHHHHHH
Confidence 4679999999999985 3321 23345788888888776 44433 23
Q ss_pred HHHcCCCcccEEecccCCCCccc
Q 040471 262 RFISKFPLLEDLLLRFCRLPEKV 284 (340)
Q Consensus 262 ~l~~~~~~L~~L~l~~c~~i~~~ 284 (340)
..+...++|++|++++|. +++.
T Consensus 233 ~~L~~~~~L~~L~Ls~N~-i~~~ 254 (372)
T 3un9_A 233 RAAREHPSLELLHLYFNE-LSSE 254 (372)
T ss_dssp HHHHHCSSCCEEECTTSS-CCHH
T ss_pred HHHHhCCCCCEEeccCCC-CCHH
Confidence 334456777777777654 4433
No 126
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.30 E-value=2.6e-07 Score=78.95 Aligned_cols=38 Identities=21% Similarity=0.443 Sum_probs=35.2
Q ss_pred CccCCCchhHHHHHhcCCchhhhh-hhhcccccchhhhc
Q 040471 8 DRITELPTFIIHHIMSYLSAKEIA-RTSILSKRWCLFCI 45 (340)
Q Consensus 8 d~i~~LPd~il~~Ifs~L~~~d~~-~~s~vskrW~~l~~ 45 (340)
..+..||||++.+||+|||.++++ +|+.|||+|+.+..
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~ 87 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVD 87 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHT
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhc
Confidence 468999999999999999999999 99999999998754
No 127
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.29 E-value=1.4e-07 Score=79.71 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=33.4
Q ss_pred CccCCCchhHHHHHhcCCchhhhhhhhcccccchhh
Q 040471 8 DRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLF 43 (340)
Q Consensus 8 d~i~~LPd~il~~Ifs~L~~~d~~~~s~vskrW~~l 43 (340)
..|+.||+||+++||+||+++|+++++.|||+||.+
T Consensus 3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l 38 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET 38 (312)
T ss_dssp CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 348899999999999999999999999999999963
No 128
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.24 E-value=7.4e-07 Score=79.66 Aligned_cols=155 Identities=20% Similarity=0.142 Sum_probs=77.1
Q ss_pred ccCCccccCCCCccEEEeeceeCCCCCCcccc-cCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccc---
Q 040471 139 CILPQTIFSAKSMATLSLFGCRMEQPSDTTTI-RLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNL--- 214 (340)
Q Consensus 139 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~--- 214 (340)
..+|..+. ++++.|+|+++.+......... .+++|+.|+|+++.++.-. ...+..+++|++|+++++. +..+
T Consensus 31 ~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~ 106 (361)
T 2xot_A 31 PNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNH-LHTLDEF 106 (361)
T ss_dssp SSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CCEECTT
T ss_pred CccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCc-CCcCCHH
Confidence 34454332 3467777777665432112223 5677777777766652111 1123456777777777654 2222
Q ss_pred ccccCCCCceEEecccc-cccc-eeeecCcCcceEeccCceeeccHHHH--HHHcCCCcccEEecccCCCCcccccc---
Q 040471 215 CVSKAHKLKKLAIYTFY-KDIG-IVEIVVPSLQQQLMLTSVWFMDEEFD--RFISKFPLLEDLLLRFCRLPEKVKIS--- 287 (340)
Q Consensus 215 ~~~~~~~L~~L~i~~~~-~~~~-~~~~~~p~L~~ll~l~~~~i~~~~~~--~l~~~~~~L~~L~l~~c~~i~~~~~~--- 287 (340)
.+..+++|+.|+++++. .... .....+++|+.| .+.++.++.-... .-...+++|++|+++++. ++.++..
T Consensus 107 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L-~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~ 184 (361)
T 2xot_A 107 LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL-YLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQ 184 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE-ECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHH
T ss_pred HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE-ECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhh
Confidence 23456677777777665 1111 111234566665 5555544431111 011457788888888654 4444322
Q ss_pred -ccc--ccEEEeecC
Q 040471 288 -SNQ--LKNLHFNSC 299 (340)
Q Consensus 288 -~~~--L~~L~l~~c 299 (340)
++. |+.|++.++
T Consensus 185 ~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 185 KLPAWVKNGLYLHNN 199 (361)
T ss_dssp HSCHHHHTTEECCSS
T ss_pred hccHhhcceEEecCC
Confidence 233 366777653
No 129
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.20 E-value=8.6e-07 Score=79.24 Aligned_cols=150 Identities=16% Similarity=0.070 Sum_probs=80.2
Q ss_pred CccEEEEEeecCCCCCccccCCcccc--CCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471 121 GIKDLVLMVHNMTQEDTVCILPQTIF--SAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP 198 (340)
Q Consensus 121 ~l~~L~l~~~~~~~~~~~~~l~~~~~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p 198 (340)
.++.|+++.+.. ..++...+ .+++|+.|+|+++.+..........+++|+.|+|+++.++.- ....+..++
T Consensus 40 ~l~~L~Ls~N~l------~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~ 112 (361)
T 2xot_A 40 YTALLDLSHNNL------SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQ 112 (361)
T ss_dssp TCSEEECCSSCC------CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCT
T ss_pred CCCEEECCCCCC------CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-CHHHhCCCc
Confidence 456666654433 23333332 567788888877766442222345677788888777766211 112245677
Q ss_pred CCcEEEecccCCCc--ccccccCCCCceEEecccc-cccceee----ecCcCcceEeccCceeeccHHHHHHHcCCCc--
Q 040471 199 SLEDFEISACWGLK--NLCVSKAHKLKKLAIYTFY-KDIGIVE----IVVPSLQQQLMLTSVWFMDEEFDRFISKFPL-- 269 (340)
Q Consensus 199 ~L~~L~l~~c~~~~--~~~~~~~~~L~~L~i~~~~-~~~~~~~----~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~-- 269 (340)
+|+.|+++++.... .-.+..+++|+.|+++++. ..+..-. ...++|+.| ++.++.++.-... .+..++.
T Consensus 113 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L-~L~~N~l~~l~~~-~~~~l~~~~ 190 (361)
T 2xot_A 113 ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLL-DLSSNKLKKLPLT-DLQKLPAWV 190 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEE-ECCSSCCCCCCHH-HHHHSCHHH
T ss_pred CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEE-ECCCCCCCccCHH-HhhhccHhh
Confidence 77888777764321 1234456777777777765 1111111 235667666 6666555432221 1223444
Q ss_pred ccEEecccCC
Q 040471 270 LEDLLLRFCR 279 (340)
Q Consensus 270 L~~L~l~~c~ 279 (340)
|+.|++++++
T Consensus 191 l~~l~l~~N~ 200 (361)
T 2xot_A 191 KNGLYLHNNP 200 (361)
T ss_dssp HTTEECCSSC
T ss_pred cceEEecCCC
Confidence 3667776543
No 130
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.20 E-value=1.4e-06 Score=72.15 Aligned_cols=143 Identities=13% Similarity=0.007 Sum_probs=83.9
Q ss_pred cEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCc--ccccccCCCCceEEecc
Q 040471 152 ATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLK--NLCVSKAHKLKKLAIYT 229 (340)
Q Consensus 152 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~--~~~~~~~~~L~~L~i~~ 229 (340)
+.++++++.+..- + ..-.+.++.|+++++.++.-.....+..+++|+.|+++++.--. .-.+..+++|+.|++++
T Consensus 14 ~~l~~s~n~l~~i--P-~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKI--P-EHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSC--C-SCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccC--c-cCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 5778887765431 1 12245689999999887432112235679999999999875321 22356789999999998
Q ss_pred cc-cccce-eeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCccc-c---cccccccEEEeecCc
Q 040471 230 FY-KDIGI-VEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKV-K---ISSNQLKNLHFNSCE 300 (340)
Q Consensus 230 ~~-~~~~~-~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~-~---~~~~~L~~L~l~~c~ 300 (340)
+. ..... ....+++|+.| .+.++.++.... ..+.++++|++|+++++. ++.+ + ..+++|+.|++.+++
T Consensus 91 N~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTL-MLRSNRITCVGN-DSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEE-ECTTSCCCCBCT-TSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CccCccCHhHhcCCcCCCEE-ECCCCcCCeECH-hHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcC
Confidence 86 22111 11245666666 555555443211 123456777777777654 3322 1 124667777776543
No 131
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.17 E-value=2.7e-06 Score=75.59 Aligned_cols=191 Identities=10% Similarity=0.025 Sum_probs=115.5
Q ss_pred cCccEEEEEeecCCCCCccccCCccc-cCCCCccEEEe-eceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTI-FSAKSMATLSL-FGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNEC 197 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~-~~~~~L~~L~L-~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~ 197 (340)
.++++|+++.+.. ...+|... .++++++.+.. .++.+..-.......+++|++|++.++.+..-. .......
T Consensus 54 ~~L~~L~Ls~N~i-----~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~-~~~~~~~ 127 (350)
T 4ay9_X 54 GDLEKIEISQNDV-----LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP-DVHKIHS 127 (350)
T ss_dssp TTCCEEEEECCTT-----CCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCC-CCTTCCB
T ss_pred CCCCEEECcCCCC-----CCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCC-chhhccc
Confidence 5899999987754 13344443 45677766444 444443322234567899999999998772110 0112345
Q ss_pred CCCcEEEecccCCCccccc---ccC-CCCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccE
Q 040471 198 PSLEDFEISACWGLKNLCV---SKA-HKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLED 272 (340)
Q Consensus 198 p~L~~L~l~~c~~~~~~~~---~~~-~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~ 272 (340)
.++..|++.++..+..+.. ..+ ..++.|+++++. ..+..-.+..++|+.+....+..++.- -...+.++++|++
T Consensus 128 ~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i-~~~~f~~l~~L~~ 206 (350)
T 4ay9_X 128 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEEL-PNDVFHGASGPVI 206 (350)
T ss_dssp SSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCC-CTTTTTTEECCSE
T ss_pred chhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCC-CHHHhccCcccch
Confidence 6777888888776655432 222 468888888775 222222234556666632223322211 1123567899999
Q ss_pred EecccCCCCcccccc-cccccEEEeecCcchhhhcc--CCCCeeEEEEe
Q 040471 273 LLLRFCRLPEKVKIS-SNQLKNLHFNSCENLKAIDT--DTPNLLSFTFS 318 (340)
Q Consensus 273 L~l~~c~~i~~~~~~-~~~L~~L~l~~c~~l~~~~~--~~p~L~~L~~~ 318 (340)
|+++++. ++.++.. +.+|++|.+.++.+++.+.. ..++|+.+++.
T Consensus 207 LdLs~N~-l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 207 LDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp EECTTSC-CCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred hhcCCCC-cCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence 9999764 6666554 68899999888887765542 34777777764
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.17 E-value=2.7e-06 Score=74.91 Aligned_cols=95 Identities=12% Similarity=0.042 Sum_probs=53.2
Q ss_pred CcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCcccccc----ccccc-EEEeecC-cch-hhhccCCCCee
Q 040471 241 VPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKIS----SNQLK-NLHFNSC-ENL-KAIDTDTPNLL 313 (340)
Q Consensus 241 ~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~----~~~L~-~L~l~~c-~~l-~~~~~~~p~L~ 313 (340)
+++|+.+ .+.+..++.-. ...+.+|++|+++++..+ ++.++.. |++|+ .+.+.+. ..+ ......|++|+
T Consensus 225 ~~~L~~l-~L~~n~i~~I~-~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSL-DISKTNATTIP-DFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEE-ECTTBCCCEEC-TTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEE
T ss_pred cCCCeEE-ECCCCCcceec-HhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcccceEEchhhhhCCccCC
Confidence 5666666 44443222110 112456777787777754 4444433 57788 8888651 112 23345678999
Q ss_pred EEEEeccCCCC-cceec-cccccccccc
Q 040471 314 SFTFSYDFNPI-PTIAM-NALSMETLFF 339 (340)
Q Consensus 314 ~L~~~~~~~~~-~~~~~-~~~~~~~l~~ 339 (340)
.+.+.++.... +.-.| ..++++.+|+
T Consensus 301 ~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 301 YVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEEeCCCccCccchhhhcCCcchhhhcc
Confidence 99987755443 22223 4557888775
No 133
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.15 E-value=4.6e-07 Score=83.37 Aligned_cols=43 Identities=28% Similarity=0.332 Sum_probs=38.6
Q ss_pred cccCCccCCCchhHHHHHhcCCchhhhhhhhcccccchhhhcc
Q 040471 4 AKGMDRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCIS 46 (340)
Q Consensus 4 ~~~~d~i~~LPd~il~~Ifs~L~~~d~~~~s~vskrW~~l~~~ 46 (340)
.-.+|.|+.||+|++.+||+||+.+|++++++|||+|+++...
T Consensus 9 ~~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 9 NLKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred ccccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 3357999999999999999999999999999999999986543
No 134
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.15 E-value=2.7e-06 Score=70.81 Aligned_cols=105 Identities=14% Similarity=0.052 Sum_probs=74.7
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS 199 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 199 (340)
.+++.|++..+.. ....|..+..+++|+.|+|+++.+..........+++|+.|+|+++.++.- ....+..+++
T Consensus 40 ~~L~~L~Ls~n~i-----~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~ 113 (229)
T 3e6j_A 40 TNAQILYLHDNQI-----TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL-PSAVFDRLVH 113 (229)
T ss_dssp TTCSEEECCSSCC-----CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTT
T ss_pred CCCCEEEcCCCcc-----CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc-ChhHhCcchh
Confidence 5788999876654 122355566789999999999987543223346789999999999887321 1223467899
Q ss_pred CcEEEecccCCCccc--ccccCCCCceEEecccc
Q 040471 200 LEDFEISACWGLKNL--CVSKAHKLKKLAIYTFY 231 (340)
Q Consensus 200 L~~L~l~~c~~~~~~--~~~~~~~L~~L~i~~~~ 231 (340)
|+.|+++++.- ..+ .+..+++|+.|+++++.
T Consensus 114 L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 114 LKELFMCCNKL-TELPRGIERLTHLTHLALDQNQ 146 (229)
T ss_dssp CCEEECCSSCC-CSCCTTGGGCTTCSEEECCSSC
T ss_pred hCeEeccCCcc-cccCcccccCCCCCEEECCCCc
Confidence 99999998743 232 34567899999998775
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.13 E-value=8.1e-07 Score=72.24 Aligned_cols=102 Identities=16% Similarity=0.098 Sum_probs=76.6
Q ss_pred HcCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471 119 DNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP 198 (340)
Q Consensus 119 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p 198 (340)
.+++++|++..+.. ..+| .+..+++|+.|++++|.+.. .......+++|+.|+++++.++. +.. +..++
T Consensus 47 l~~L~~L~ls~n~l------~~l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~L~~N~l~~--l~~-~~~l~ 115 (198)
T 1ds9_A 47 LKACKHLALSTNNI------EKIS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS--LSG-IEKLV 115 (198)
T ss_dssp TTTCSEEECSEEEE------SCCC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHCSEEEEEEEECCC--HHH-HHHHH
T ss_pred CCCCCEEECCCCCC------cccc-ccccCCCCCEEECCCCCccc-ccchhhcCCcCCEEECcCCcCCc--CCc-cccCC
Confidence 47899999977654 3466 67778999999999998764 33344567999999999999843 222 56789
Q ss_pred CCcEEEecccCCCc--c-cccccCCCCceEEecccc
Q 040471 199 SLEDFEISACWGLK--N-LCVSKAHKLKKLAIYTFY 231 (340)
Q Consensus 199 ~L~~L~l~~c~~~~--~-~~~~~~~~L~~L~i~~~~ 231 (340)
+|+.|+++++.--. . -.+..+++|+.|+++++.
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 99999999885322 1 134567899999999876
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.08 E-value=4.6e-06 Score=78.99 Aligned_cols=101 Identities=13% Similarity=0.105 Sum_probs=71.1
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS 199 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 199 (340)
..++.|+++.+.. ..+|. +..+++|+.|+|++|.+.. .+.....+++|+.|+|+++.++. +. -+..+++
T Consensus 441 ~~L~~L~Ls~n~l------~~lp~-~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~ 509 (567)
T 1dce_A 441 ADVRVLHLAHKDL------TVLCH-LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN--VD-GVANLPR 509 (567)
T ss_dssp TTCSEEECTTSCC------SSCCC-GGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSS
T ss_pred cCceEEEecCCCC------CCCcC-ccccccCcEeecCcccccc-cchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCC
Confidence 4677887765544 34665 7778889999998887763 44456778888899888888742 22 3567888
Q ss_pred CcEEEecccCCCc---ccccccCCCCceEEecccc
Q 040471 200 LEDFEISACWGLK---NLCVSKAHKLKKLAIYTFY 231 (340)
Q Consensus 200 L~~L~l~~c~~~~---~~~~~~~~~L~~L~i~~~~ 231 (340)
|+.|+++++.--. .-.+..+++|+.|+++++.
T Consensus 510 L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 510 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp CCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred CcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 8888888874322 2245567888888888776
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.01 E-value=9.7e-06 Score=64.43 Aligned_cols=82 Identities=21% Similarity=0.133 Sum_probs=43.6
Q ss_pred CCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCc--ccccccCCCCceEE
Q 040471 149 KSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLK--NLCVSKAHKLKKLA 226 (340)
Q Consensus 149 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~--~~~~~~~~~L~~L~ 226 (340)
++|+.|+++++.+..........+++|++|++.++.++.- ....+..+++|+.|+++++.--. .-.+..+++|+.|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 5677777777765432222235567777777777665210 01123456667777776653211 11123455666666
Q ss_pred ecccc
Q 040471 227 IYTFY 231 (340)
Q Consensus 227 i~~~~ 231 (340)
++++.
T Consensus 107 l~~N~ 111 (177)
T 2o6r_A 107 LDTNQ 111 (177)
T ss_dssp CCSSC
T ss_pred CcCCc
Confidence 66554
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.01 E-value=7.2e-06 Score=66.32 Aligned_cols=104 Identities=15% Similarity=0.112 Sum_probs=48.8
Q ss_pred CccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCC
Q 040471 121 GIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSL 200 (340)
Q Consensus 121 ~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L 200 (340)
++++|++..+.. ..+|..+..+++|+.|+++++.+.......+..+++|++|+|+++.++.-. ...+..+++|
T Consensus 32 ~l~~L~L~~n~i------~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L 104 (193)
T 2wfh_A 32 DVTELYLDGNQF------TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP-PRTFDGLKSL 104 (193)
T ss_dssp TCCEEECCSSCC------CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTC
T ss_pred CCCEEECCCCcC------chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC-HHHhCCCCCC
Confidence 455555544333 244445555566666666665554322223445566666666665542110 0113345566
Q ss_pred cEEEecccCCC--cccccccCCCCceEEecccc
Q 040471 201 EDFEISACWGL--KNLCVSKAHKLKKLAIYTFY 231 (340)
Q Consensus 201 ~~L~l~~c~~~--~~~~~~~~~~L~~L~i~~~~ 231 (340)
+.|+++++.-- ..-.+..+++|+.|+++++.
T Consensus 105 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 105 RLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 66666554321 11112334555555555443
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.95 E-value=7.4e-06 Score=77.62 Aligned_cols=54 Identities=11% Similarity=0.047 Sum_probs=29.2
Q ss_pred ccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccc--ccccCCCCceEEecccc
Q 040471 174 SLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNL--CVSKAHKLKKLAIYTFY 231 (340)
Q Consensus 174 ~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~--~~~~~~~L~~L~i~~~~ 231 (340)
.|+.|+++++.++. +.. +..+++|+.|+++++.-- .+ .+..+++|+.|+++++.
T Consensus 442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~ 497 (567)
T 1dce_A 442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA 497 (567)
T ss_dssp TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC
T ss_pred CceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCC
Confidence 46666666665521 122 455666666666665321 21 34455666666666554
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.94 E-value=2.3e-06 Score=83.62 Aligned_cols=114 Identities=11% Similarity=0.067 Sum_probs=70.9
Q ss_pred cCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccc--ccc
Q 040471 140 ILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNL--CVS 217 (340)
Q Consensus 140 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~--~~~ 217 (340)
..+..+..+++|+.|+|+++.+.. .......+++|+.|+|+++.++ .+..-+..+++|+.|+|+++.-- .+ .+.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 290 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG 290 (727)
T ss_dssp -------CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG
T ss_pred cChhhhccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCC-ccChhhc
Confidence 345556668889999999887653 3344557889999999988774 22222467889999999887532 32 355
Q ss_pred cCCCCceEEecccc-cccceeeecCcCcceEeccCceeeccH
Q 040471 218 KAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDE 258 (340)
Q Consensus 218 ~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~ 258 (340)
.+++|+.|+++++. ..+......+++|+.| .+.++.+++.
T Consensus 291 ~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L-~L~~N~l~~~ 331 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVTTLPWEFGNLCNLQFL-GVEGNPLEKQ 331 (727)
T ss_dssp GGTTCSEEECCSSCCCCCCSSTTSCTTCCCE-ECTTSCCCSH
T ss_pred CCCCCCEEECCCCCCCccChhhhcCCCccEE-eCCCCccCCC
Confidence 67889999998876 1111111245566666 6666666543
No 141
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.89 E-value=2.5e-06 Score=77.93 Aligned_cols=39 Identities=36% Similarity=0.577 Sum_probs=36.3
Q ss_pred ccCCccCCCchh----HHHHHhcCCchhhhhhhhcccccchhh
Q 040471 5 KGMDRITELPTF----IIHHIMSYLSAKEIARTSILSKRWCLF 43 (340)
Q Consensus 5 ~~~d~i~~LPd~----il~~Ifs~L~~~d~~~~s~vskrW~~l 43 (340)
-.+|.++.||+| ++.+||+||+.+|++++++|||+|+++
T Consensus 6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~ 48 (435)
T 1p22_A 6 LQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV 48 (435)
T ss_dssp SCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred hhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 357999999999 999999999999999999999999954
No 142
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.89 E-value=5.4e-06 Score=75.85 Aligned_cols=38 Identities=21% Similarity=0.441 Sum_probs=35.9
Q ss_pred cCCccCCCchhHHHHHhcCCchhhhhhhhcccccchhh
Q 040471 6 GMDRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLF 43 (340)
Q Consensus 6 ~~d~i~~LPd~il~~Ifs~L~~~d~~~~s~vskrW~~l 43 (340)
.+|.++.||+|++.+||+||+.+|++++++|||+|+.+
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 56999999999999999999999999999999999864
No 143
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.88 E-value=1.1e-05 Score=64.86 Aligned_cols=62 Identities=13% Similarity=0.161 Sum_probs=30.5
Q ss_pred CCCCccEEEeece-eCCCCCC----cccccCcccceEecceEeeChHHHHHH---HhcCCCCcEEEeccc
Q 040471 147 SAKSMATLSLFGC-RMEQPSD----TTTIRLDSLKKLTLENVYINDQMFQKL---TNECPSLEDFEISAC 208 (340)
Q Consensus 147 ~~~~L~~L~L~~~-~~~~~~~----~~~~~~~~L~~L~L~~~~~~~~~l~~l---~~~~p~L~~L~l~~c 208 (340)
.+++|++|+|++| .++.... ......++|++|+|+++.+++++...+ +...++|++|++++|
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 3455555555555 4432110 111234556666666666655444333 334556666666655
No 144
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.87 E-value=2e-05 Score=63.61 Aligned_cols=89 Identities=16% Similarity=0.087 Sum_probs=49.0
Q ss_pred ccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCC--ccccc
Q 040471 139 CILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGL--KNLCV 216 (340)
Q Consensus 139 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~--~~~~~ 216 (340)
..+|..+. ++|+.|+++++.+.. .......+++|+.|+|+++.++.-. ...+..+++|++|+++++.-- ..-.+
T Consensus 23 ~~ip~~~~--~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~l~~i~~~~f 98 (193)
T 2wfh_A 23 KVLPKGIP--RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLS-NQSFSNMTQLLTLILSYNRLRCIPPRTF 98 (193)
T ss_dssp SSCCSCCC--TTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred CcCCCCCC--CCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeC-HhHccCCCCCCEEECCCCccCEeCHHHh
Confidence 44554432 567777777776653 2234556777777777777662111 112345667777777765321 11123
Q ss_pred ccCCCCceEEecccc
Q 040471 217 SKAHKLKKLAIYTFY 231 (340)
Q Consensus 217 ~~~~~L~~L~i~~~~ 231 (340)
..+++|+.|+++++.
T Consensus 99 ~~l~~L~~L~L~~N~ 113 (193)
T 2wfh_A 99 DGLKSLRLLSLHGND 113 (193)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred CCCCCCCEEECCCCC
Confidence 445666666666554
No 145
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.85 E-value=2.1e-05 Score=63.46 Aligned_cols=90 Identities=18% Similarity=0.132 Sum_probs=51.6
Q ss_pred ccCCccccCCCCccEEEeeceeCCCCCCc-ccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcc--cc
Q 040471 139 CILPQTIFSAKSMATLSLFGCRMEQPSDT-TTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKN--LC 215 (340)
Q Consensus 139 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~--~~ 215 (340)
..+|..+. ++|+.|+++++.+...... ....+++|++|+|+++.++.-. ...+..+++|++|+++++.--.. -.
T Consensus 21 ~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 97 (192)
T 1w8a_A 21 KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENKIKEISNKM 97 (192)
T ss_dssp SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCCCCEECSSS
T ss_pred CcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC-HhHcCCcccCCEEECCCCcCCccCHHH
Confidence 45555443 2788888888766442211 2456778888888777663211 11234567777777777643211 12
Q ss_pred cccCCCCceEEecccc
Q 040471 216 VSKAHKLKKLAIYTFY 231 (340)
Q Consensus 216 ~~~~~~L~~L~i~~~~ 231 (340)
+..+++|+.|+++++.
T Consensus 98 ~~~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 98 FLGLHQLKTLNLYDNQ 113 (192)
T ss_dssp STTCTTCCEEECCSSC
T ss_pred hcCCCCCCEEECCCCc
Confidence 3445677777777654
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.83 E-value=7.3e-05 Score=65.68 Aligned_cols=51 Identities=12% Similarity=0.034 Sum_probs=30.5
Q ss_pred HcCCCccc-EEecccCCCCcccccc----cccccEEEeecCc--ch-hhhccCCCCeeEEE
Q 040471 264 ISKFPLLE-DLLLRFCRLPEKVKIS----SNQLKNLHFNSCE--NL-KAIDTDTPNLLSFT 316 (340)
Q Consensus 264 ~~~~~~L~-~L~l~~c~~i~~~~~~----~~~L~~L~l~~c~--~l-~~~~~~~p~L~~L~ 316 (340)
+.+|++|+ .+.+.. .++.++.. |++|+++++.+.. .+ ......+++|+++.
T Consensus 269 F~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 269 FSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred hhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 45678888 888875 34444332 6778888775432 22 22334567777764
No 147
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.80 E-value=2.3e-05 Score=62.26 Aligned_cols=104 Identities=16% Similarity=0.160 Sum_probs=73.3
Q ss_pred cCccEEEEEeecCCCCCccccCCcc-ccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQT-IFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP 198 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p 198 (340)
.++++|++..+.. ..++.. +..+++|++|+++++.+..........+++|+.|+++++.++.- ....+..++
T Consensus 28 ~~l~~L~l~~n~l------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~ 100 (177)
T 2o6r_A 28 SSATRLELESNKL------QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL-PNGVFDKLT 100 (177)
T ss_dssp TTCSEEECCSSCC------CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCT
T ss_pred CCCcEEEeCCCcc------cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcccc-CHHHhhCCc
Confidence 4788888866544 345544 45689999999999987653323346889999999999887321 122346789
Q ss_pred CCcEEEecccCCCccc---ccccCCCCceEEecccc
Q 040471 199 SLEDFEISACWGLKNL---CVSKAHKLKKLAIYTFY 231 (340)
Q Consensus 199 ~L~~L~l~~c~~~~~~---~~~~~~~L~~L~i~~~~ 231 (340)
+|++|+++++.- ..+ .+..+++|+.|+++++.
T Consensus 101 ~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 101 QLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEEECcCCcc-eEeCHHHhcCCcccCEEEecCCC
Confidence 999999998743 332 23457899999998775
No 148
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.78 E-value=1.9e-05 Score=63.77 Aligned_cols=104 Identities=11% Similarity=0.022 Sum_probs=74.4
Q ss_pred CccEEEEEeecCCCCCccccCCc--cccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471 121 GIKDLVLMVHNMTQEDTVCILPQ--TIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP 198 (340)
Q Consensus 121 ~l~~L~l~~~~~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p 198 (340)
++++|++..+.. ..++. .+..+++|++|+|+++.+..........+++|++|+|+++.++.-. ...+..++
T Consensus 30 ~l~~L~l~~n~i------~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~ 102 (192)
T 1w8a_A 30 HTTELLLNDNEL------GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS-NKMFLGLH 102 (192)
T ss_dssp TCSEEECCSCCC------CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEEC-SSSSTTCT
T ss_pred CCCEEECCCCcC------CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccC-HHHhcCCC
Confidence 678888866544 34443 3667899999999999886643445678899999999999873211 11245689
Q ss_pred CCcEEEecccCCCcc--cccccCCCCceEEecccc
Q 040471 199 SLEDFEISACWGLKN--LCVSKAHKLKKLAIYTFY 231 (340)
Q Consensus 199 ~L~~L~l~~c~~~~~--~~~~~~~~L~~L~i~~~~ 231 (340)
+|++|+++++.--.. -.+..+++|+.|+++++.
T Consensus 103 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 103 QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 999999998853221 234567899999998876
No 149
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.68 E-value=1.3e-05 Score=78.30 Aligned_cols=102 Identities=17% Similarity=0.118 Sum_probs=80.0
Q ss_pred cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS 199 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~ 199 (340)
..++.|++..+.. ..+|..++.+++|++|+|++|.+. ..+.....+++|+.|+|+++.++ .+..-+..+++
T Consensus 224 ~~L~~L~Ls~n~l------~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~ 294 (727)
T 4b8c_D 224 QLWHALDLSNLQI------FNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQ 294 (727)
T ss_dssp CCCCEEECTTSCC------SCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTT
T ss_pred CCCcEEECCCCCC------CCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCC
Confidence 5678888866554 478888889999999999999887 34455678999999999999885 22223567899
Q ss_pred CcEEEecccCCCccc--ccccCCCCceEEecccc
Q 040471 200 LEDFEISACWGLKNL--CVSKAHKLKKLAIYTFY 231 (340)
Q Consensus 200 L~~L~l~~c~~~~~~--~~~~~~~L~~L~i~~~~ 231 (340)
|++|+|++|.- ..+ .+..+++|+.|+++++.
T Consensus 295 L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 295 LKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp CSEEECCSSCC-CCCCSSTTSCTTCCCEECTTSC
T ss_pred CCEEECCCCCC-CccChhhhcCCCccEEeCCCCc
Confidence 99999999843 333 36678999999999876
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.60 E-value=8.6e-05 Score=59.47 Aligned_cols=60 Identities=15% Similarity=0.237 Sum_probs=34.4
Q ss_pred cCcccceEecceE-eeChHHHHHHH---hcCCCCcEEEecccCCCccc-------ccccCCCCceEEecccc
Q 040471 171 RLDSLKKLTLENV-YINDQMFQKLT---NECPSLEDFEISACWGLKNL-------CVSKAHKLKKLAIYTFY 231 (340)
Q Consensus 171 ~~~~L~~L~L~~~-~~~~~~l~~l~---~~~p~L~~L~l~~c~~~~~~-------~~~~~~~L~~L~i~~~~ 231 (340)
..++|++|+|+++ .+++++...+. ..+++|++|++++|.- .+. .+...++|++|+++++.
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i-~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRS-NDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCC-CHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCC-ChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 4677777777777 66665554443 4466777777776642 211 11223556666665554
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.56 E-value=9.1e-05 Score=58.41 Aligned_cols=90 Identities=13% Similarity=0.120 Sum_probs=61.5
Q ss_pred ccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCC--ccccc
Q 040471 139 CILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGL--KNLCV 216 (340)
Q Consensus 139 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~--~~~~~ 216 (340)
..+|..+. ++|+.|+|+++.+..........+++|++|+|+++.++.- ....+..+++|+.|+++++.-- ..-.+
T Consensus 22 ~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~l~~~~~~~~ 98 (170)
T 3g39_A 22 ASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDNQLKSIPRGAF 98 (170)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCCccCEeCHHHh
Confidence 45665553 7899999999887653334456789999999998887311 1223467889999999887432 11134
Q ss_pred ccCCCCceEEecccc
Q 040471 217 SKAHKLKKLAIYTFY 231 (340)
Q Consensus 217 ~~~~~L~~L~i~~~~ 231 (340)
..+++|+.|+++++.
T Consensus 99 ~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 99 DNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred cCCCCCCEEEeCCCC
Confidence 567888888888765
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.53 E-value=0.00013 Score=57.78 Aligned_cols=90 Identities=11% Similarity=0.081 Sum_probs=61.4
Q ss_pred ccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCC--ccccc
Q 040471 139 CILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGL--KNLCV 216 (340)
Q Consensus 139 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~--~~~~~ 216 (340)
..+|..+. ++|+.|+|+++.+..........+++|++|+|+++.++.- ...++..+++|+.|+++++.-- ..-.+
T Consensus 25 ~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~l~~l~~~~~ 101 (174)
T 2r9u_A 25 ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDNHLKSIPRGAF 101 (174)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCCccceeCHHHh
Confidence 56666553 7899999999887653334556789999999998877321 1123456889999999886432 11124
Q ss_pred ccCCCCceEEecccc
Q 040471 217 SKAHKLKKLAIYTFY 231 (340)
Q Consensus 217 ~~~~~L~~L~i~~~~ 231 (340)
..+++|+.|+++++.
T Consensus 102 ~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 102 DNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTCTTCSEEECCSSC
T ss_pred ccccCCCEEEeCCCC
Confidence 567888888888765
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.43 E-value=0.00046 Score=62.31 Aligned_cols=58 Identities=9% Similarity=0.051 Sum_probs=35.5
Q ss_pred HcCCCcccEEecccCCCCcccccc----cccccEEEeecCc-ch-hhhccCCCCeeEEEEeccCCCC
Q 040471 264 ISKFPLLEDLLLRFCRLPEKVKIS----SNQLKNLHFNSCE-NL-KAIDTDTPNLLSFTFSYDFNPI 324 (340)
Q Consensus 264 ~~~~~~L~~L~l~~c~~i~~~~~~----~~~L~~L~l~~c~-~l-~~~~~~~p~L~~L~~~~~~~~~ 324 (340)
+.+|++|+.+.+.. .++.++.. |.+|+.+.+...- .+ ......+ +|+++.+.++..+.
T Consensus 296 F~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 296 LEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp TTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred hhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence 45677888887763 24444332 5788888885331 11 2233456 89999998865543
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.33 E-value=0.00033 Score=63.30 Aligned_cols=12 Identities=8% Similarity=0.014 Sum_probs=6.6
Q ss_pred cCCCcccEEecc
Q 040471 265 SKFPLLEDLLLR 276 (340)
Q Consensus 265 ~~~~~L~~L~l~ 276 (340)
.+|++|+.+.+.
T Consensus 320 ~~c~~L~~l~lp 331 (401)
T 4fdw_A 320 GGNRKVTQLTIP 331 (401)
T ss_dssp TTCCSCCEEEEC
T ss_pred cCCCCccEEEEC
Confidence 345556655554
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.05 E-value=0.00032 Score=55.45 Aligned_cols=84 Identities=13% Similarity=0.065 Sum_probs=59.8
Q ss_pred cCccEEEEEeecCCCCCccccC-CccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCIL-PQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP 198 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p 198 (340)
.+++.|++..+.. ..+ |..+..+++|+.|+|+++.+.......+..+++|++|+|+++.++.- ....+..++
T Consensus 33 ~~L~~L~Ls~N~l------~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~ 105 (174)
T 2r9u_A 33 TDKQRLWLNNNQI------TKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI-PRGAFDNLK 105 (174)
T ss_dssp TTCSEEECCSSCC------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCT
T ss_pred CCCcEEEeCCCCc------cccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcccee-CHHHhcccc
Confidence 5788888866554 344 44566789999999999987653222346789999999999887311 112356789
Q ss_pred CCcEEEecccCC
Q 040471 199 SLEDFEISACWG 210 (340)
Q Consensus 199 ~L~~L~l~~c~~ 210 (340)
+|+.|+++++..
T Consensus 106 ~L~~L~L~~N~~ 117 (174)
T 2r9u_A 106 SLTHIYLYNNPW 117 (174)
T ss_dssp TCSEEECCSSCB
T ss_pred CCCEEEeCCCCc
Confidence 999999998743
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.92 E-value=0.00077 Score=52.97 Aligned_cols=83 Identities=14% Similarity=0.093 Sum_probs=58.0
Q ss_pred cCccEEEEEeecCCCCCccccC-CccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471 120 NGIKDLVLMVHNMTQEDTVCIL-PQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP 198 (340)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p 198 (340)
.+++.|++..+.. ..+ |..+..+++|+.|+|+++.+..........+++|++|+|+++.++.- ....+..++
T Consensus 30 ~~l~~L~L~~N~i------~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~ 102 (170)
T 3g39_A 30 TTTQVLYLYDNQI------TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI-PRGAFDNLK 102 (170)
T ss_dssp TTCSEEECCSSCC------CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCT
T ss_pred CCCcEEEcCCCcC------CccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEe-CHHHhcCCC
Confidence 4678888866544 344 44566789999999999887653223346789999999999887321 112356789
Q ss_pred CCcEEEecccC
Q 040471 199 SLEDFEISACW 209 (340)
Q Consensus 199 ~L~~L~l~~c~ 209 (340)
+|+.|+++++.
T Consensus 103 ~L~~L~L~~N~ 113 (170)
T 3g39_A 103 SLTHIWLLNNP 113 (170)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEeCCCC
Confidence 99999998864
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.80 E-value=0.0012 Score=55.92 Aligned_cols=16 Identities=25% Similarity=0.231 Sum_probs=11.5
Q ss_pred HHHHcCCCcccEEecc
Q 040471 261 DRFISKFPLLEDLLLR 276 (340)
Q Consensus 261 ~~l~~~~~~L~~L~l~ 276 (340)
..++..+|+|+.|+=.
T Consensus 244 ~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 244 SAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHCTTCCEESSC
T ss_pred HHHHHHCcccCeECCc
Confidence 4567788988888643
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.62 E-value=0.0016 Score=57.41 Aligned_cols=90 Identities=16% Similarity=0.090 Sum_probs=58.8
Q ss_pred cccCCccccCCCCccEEEeec-eeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccc--
Q 040471 138 VCILPQTIFSAKSMATLSLFG-CRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNL-- 214 (340)
Q Consensus 138 ~~~l~~~~~~~~~L~~L~L~~-~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~-- 214 (340)
...+|. +..+++|+.|+|++ +.+.......+..+++|+.|+|+++.++.- ....+..+++|+.|+|+++.- ..+
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l-~~~~~ 97 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFNAL-ESLSW 97 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSSCC-SCCCS
T ss_pred CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee-CHHHhcCCcCCCEEeCCCCcc-ceeCH
Confidence 356777 77788899999986 766543223456788899999988876321 122346788899999888632 222
Q ss_pred -ccccCCCCceEEecccc
Q 040471 215 -CVSKAHKLKKLAIYTFY 231 (340)
Q Consensus 215 -~~~~~~~L~~L~i~~~~ 231 (340)
.+.. ..|+.|.+.++.
T Consensus 98 ~~~~~-~~L~~l~l~~N~ 114 (347)
T 2ifg_A 98 KTVQG-LSLQELVLSGNP 114 (347)
T ss_dssp TTTCS-CCCCEEECCSSC
T ss_pred HHccc-CCceEEEeeCCC
Confidence 1222 238888887654
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.33 E-value=0.0014 Score=55.42 Aligned_cols=59 Identities=17% Similarity=0.254 Sum_probs=25.6
Q ss_pred CCCccEEEeeceeCCC--CCCcccccCcccceEecceEee-ChHHHHHHHhcCCCCcEEEeccc
Q 040471 148 AKSMATLSLFGCRMEQ--PSDTTTIRLDSLKKLTLENVYI-NDQMFQKLTNECPSLEDFEISAC 208 (340)
Q Consensus 148 ~~~L~~L~L~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~L~~L~l~~c 208 (340)
+++|+.|+|+++.+.. ........+++|+.|+|+++.+ +...+..+ ... +|++|.+.++
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l-~~l-~L~~L~L~~N 230 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI-KGL-KLEELWLDGN 230 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGG-TTS-CCSEEECTTS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhc-ccC-CcceEEccCC
Confidence 4455555555555433 1111122455555555555555 22223222 112 5555555544
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.04 E-value=0.0081 Score=52.75 Aligned_cols=80 Identities=11% Similarity=0.119 Sum_probs=41.8
Q ss_pred CccEEEEEe-ecCCCCCccccCC-ccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471 121 GIKDLVLMV-HNMTQEDTVCILP-QTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP 198 (340)
Q Consensus 121 ~l~~L~l~~-~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p 198 (340)
++++|+|.. +.. ..++ ..+..+++|+.|+|+++.+.......+..+++|+.|+|+++.++.- ...++...+
T Consensus 32 ~L~~L~l~~~n~l------~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~~~ 104 (347)
T 2ifg_A 32 NLTELYIENQQHL------QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL-SWKTVQGLS 104 (347)
T ss_dssp CCSEEECCSCSSC------CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCC-CSTTTCSCC
T ss_pred CeeEEEccCCCCC------CCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcccee-CHHHcccCC
Confidence 566666653 322 3333 3344567777777777665442222345667777777777665210 011122222
Q ss_pred CCcEEEeccc
Q 040471 199 SLEDFEISAC 208 (340)
Q Consensus 199 ~L~~L~l~~c 208 (340)
|+.|++.++
T Consensus 105 -L~~l~l~~N 113 (347)
T 2ifg_A 105 -LQELVLSGN 113 (347)
T ss_dssp -CCEEECCSS
T ss_pred -ceEEEeeCC
Confidence 777777654
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.89 E-value=0.062 Score=42.96 Aligned_cols=50 Identities=10% Similarity=0.021 Sum_probs=25.6
Q ss_pred ccCceeeccHHHHHH---HcCCCcccEEecccCC--CCccccc--------ccccccEEEeec
Q 040471 249 MLTSVWFMDEEFDRF---ISKFPLLEDLLLRFCR--LPEKVKI--------SSNQLKNLHFNS 298 (340)
Q Consensus 249 ~l~~~~i~~~~~~~l---~~~~~~L~~L~l~~c~--~i~~~~~--------~~~~L~~L~l~~ 298 (340)
.+.++.|++++...+ +..-..|++|+++++. .+++.+- .-++|++|++..
T Consensus 104 ~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 104 NVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp ECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred ecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 344444666654443 3444567788777542 2333211 135666666654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.37 E-value=0.015 Score=46.52 Aligned_cols=100 Identities=13% Similarity=0.221 Sum_probs=63.3
Q ss_pred hHHHHHHHHHH--cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCccc----ccCcccceEecce
Q 040471 109 LLDKWIGLAVD--NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTT----IRLDSLKKLTLEN 182 (340)
Q Consensus 109 ~l~~~l~~~~~--~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~----~~~~~L~~L~L~~ 182 (340)
.++..+..+.. ..+++|++..+..-.+.+...+...+..-.+|+.|+|++|.+++...... ..-..|++|+|.+
T Consensus 28 ~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~ 107 (197)
T 1pgv_A 28 DVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES 107 (197)
T ss_dssp CHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred CHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC
Confidence 46666666554 46788887543121122334455556666789999998888755221111 1347789999999
Q ss_pred EeeChHHHHHHHhc---CCCCcEEEeccc
Q 040471 183 VYINDQMFQKLTNE---CPSLEDFEISAC 208 (340)
Q Consensus 183 ~~~~~~~l~~l~~~---~p~L~~L~l~~c 208 (340)
+.+++.+...++.. -..|++|+|+++
T Consensus 108 N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 108 NFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp SBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 88888777776643 456888888765
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.24 E-value=0.22 Score=44.40 Aligned_cols=78 Identities=9% Similarity=0.170 Sum_probs=41.0
Q ss_pred cccCCCCccEEEeecee--CCCCCCcccccCcccceEecceEee--ChHHHHHHHhcCCCCcEEEecccCCCcccccccC
Q 040471 144 TIFSAKSMATLSLFGCR--MEQPSDTTTIRLDSLKKLTLENVYI--NDQMFQKLTNECPSLEDFEISACWGLKNLCVSKA 219 (340)
Q Consensus 144 ~~~~~~~L~~L~L~~~~--~~~~~~~~~~~~~~L~~L~L~~~~~--~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~ 219 (340)
..+.+.+|+.+.+.... ++. .....+.+|+.+.+..... .. ..+..|+.++.+...... +.......|
T Consensus 225 ~~~~~~~l~~i~ip~~~~~i~~---~~f~~~~~l~~~~~~~~~~~i~~----~~F~~~~~l~~~~~~~~~-i~~~~F~~~ 296 (394)
T 4fs7_A 225 FALSKTGVKNIIIPDSFTELGK---SVFYGCTDLESISIQNNKLRIGG----SLFYNCSGLKKVIYGSVI-VPEKTFYGC 296 (394)
T ss_dssp TTTTTCCCCEEEECTTCCEECS---STTTTCSSCCEEEECCTTCEECS----CTTTTCTTCCEEEECSSE-ECTTTTTTC
T ss_pred hhcccCCCceEEECCCceeccc---ccccccccceeEEcCCCcceeec----cccccccccceeccCcee-ecccccccc
Confidence 34456778888776531 222 2344677777777654321 11 113456777766654321 222233456
Q ss_pred CCCceEEecc
Q 040471 220 HKLKKLAIYT 229 (340)
Q Consensus 220 ~~L~~L~i~~ 229 (340)
.+|+.+.+..
T Consensus 297 ~~L~~i~l~~ 306 (394)
T 4fs7_A 297 SSLTEVKLLD 306 (394)
T ss_dssp TTCCEEEECT
T ss_pred cccccccccc
Confidence 6777776653
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.90 E-value=0.065 Score=47.90 Aligned_cols=121 Identities=16% Similarity=0.196 Sum_probs=62.4
Q ss_pred ccccCcccceEecceEee--ChHHHHHHHhcCCCCcEEEeccc-CCCcccccccCCCCceEEecccccccceeeecCcCc
Q 040471 168 TTIRLDSLKKLTLENVYI--NDQMFQKLTNECPSLEDFEISAC-WGLKNLCVSKAHKLKKLAIYTFYKDIGIVEIVVPSL 244 (340)
Q Consensus 168 ~~~~~~~L~~L~L~~~~~--~~~~l~~l~~~~p~L~~L~l~~c-~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~p~L 244 (340)
.+..|.+|+.+.+..... .. ..+..|+.|+.+.+... ..+..-...+|.+|+.+.+...-
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~----~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v------------- 322 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGT----GAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGI------------- 322 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECT----TTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTC-------------
T ss_pred eeeecccccEEecccccceecC----cccccccccccccCCCcccccCceeecCCCCcCEEEeCCcc-------------
Confidence 345678888888754322 22 12456888888888632 22333355667888888875321
Q ss_pred ceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCccccc----ccccccEEEeecCcchhhhccCCCCeeEEEEec
Q 040471 245 QQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKI----SSNQLKNLHFNSCENLKAIDTDTPNLLSFTFSY 319 (340)
Q Consensus 245 ~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~----~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~~~~ 319 (340)
+. |.+. .+.+|.+|+++.+... ++.++. .|.+|+++++.+......-...+.+|+++.+..
T Consensus 323 ~~--------I~~~----aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 323 TQ--------ILDD----AFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVAP 387 (394)
T ss_dssp CE--------ECTT----TTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC-------
T ss_pred cE--------ehHh----HhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeCC
Confidence 11 1111 2456777777777532 333332 257777777765433222223456666666544
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.83 E-value=0.11 Score=46.33 Aligned_cols=100 Identities=12% Similarity=0.111 Sum_probs=59.7
Q ss_pred ccccCCCCceEEecccccccce-eeecCcCcceEeccCce-eeccHHHHHHHcCCCcccEEecccCCCCcccccc----c
Q 040471 215 CVSKAHKLKKLAIYTFYKDIGI-VEIVVPSLQQQLMLTSV-WFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKIS----S 288 (340)
Q Consensus 215 ~~~~~~~L~~L~i~~~~~~~~~-~~~~~p~L~~ll~l~~~-~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~----~ 288 (340)
....|..|+.+.+......... ...+++.|+.+..-... .|.+.+ +.+|.+|+++.+... ++.++.. |
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~~--v~~I~~~aF~~C 333 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELPESV----FAGCISLKSIDIPEG--ITQILDDAFAGC 333 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTT----TTTCTTCCEEECCTT--CCEECTTTTTTC
T ss_pred eeeecccccEEecccccceecCcccccccccccccCCCcccccCcee----ecCCCCcCEEEeCCc--ccEehHhHhhCC
Confidence 3445777777777543311111 12246666666211222 133333 568999999999743 4444433 7
Q ss_pred ccccEEEeec-Ccch-hhhccCCCCeeEEEEecc
Q 040471 289 NQLKNLHFNS-CENL-KAIDTDTPNLLSFTFSYD 320 (340)
Q Consensus 289 ~~L~~L~l~~-c~~l-~~~~~~~p~L~~L~~~~~ 320 (340)
.+|+++.+.. ...+ ......|++|+++.+.+.
T Consensus 334 ~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 334 EQLERIAIPSSVTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCCCEEEECcccCEEhHhHhhCCCCCCEEEECCc
Confidence 8999999953 2333 344467899999999874
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=93.52 E-value=0.2 Score=44.69 Aligned_cols=169 Identities=14% Similarity=0.104 Sum_probs=83.3
Q ss_pred cCCcc-ccCCCCccEEEeecee--CCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccC-CCcccc
Q 040471 140 ILPQT-IFSAKSMATLSLFGCR--MEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACW-GLKNLC 215 (340)
Q Consensus 140 ~l~~~-~~~~~~L~~L~L~~~~--~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~-~~~~~~ 215 (340)
.++.. +..|.+|+.+.+.... +.. .....|..|+.+.+...... +......+..|+.+.+.... .+..-.
T Consensus 175 ~I~~~~F~~c~~L~~i~l~~~~~~I~~---~~F~~~~~L~~i~~~~~~~~---i~~~~~~~~~l~~i~ip~~~~~i~~~~ 248 (394)
T 4fs7_A 175 TLHNGLFSGCGKLKSIKLPRNLKIIRD---YCFAECILLENMEFPNSLYY---LGDFALSKTGVKNIIIPDSFTELGKSV 248 (394)
T ss_dssp EECTTTTTTCTTCCBCCCCTTCCEECT---TTTTTCTTCCBCCCCTTCCE---ECTTTTTTCCCCEEEECTTCCEECSST
T ss_pred eeccccccCCCCceEEEcCCCceEeCc---hhhccccccceeecCCCceE---eehhhcccCCCceEEECCCceeccccc
Confidence 34433 3448888888886531 222 23445667776666543220 01112334566666554321 111112
Q ss_pred cccCCCCceEEeccccc----------------------ccceeeecCcCcceEeccCcee-eccHHHHHHHcCCCcccE
Q 040471 216 VSKAHKLKKLAIYTFYK----------------------DIGIVEIVVPSLQQQLMLTSVW-FMDEEFDRFISKFPLLED 272 (340)
Q Consensus 216 ~~~~~~L~~L~i~~~~~----------------------~~~~~~~~~p~L~~ll~l~~~~-i~~~~~~~l~~~~~~L~~ 272 (340)
...|..|+.+.+..... ........+++|+.+....+.. |.+.+ +.+|.+|++
T Consensus 249 f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~i~~I~~~a----F~~c~~L~~ 324 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDSVKFIGEEA----FESCTSLVS 324 (394)
T ss_dssp TTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTTCCEECTTT----TTTCTTCCE
T ss_pred ccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccccceechhh----hcCCCCCCE
Confidence 22344444444432210 0001112455566652222322 33333 456888888
Q ss_pred EecccCCCCcccccc----cccccEEEeecC-cch-hhhccCCCCeeEEEEecc
Q 040471 273 LLLRFCRLPEKVKIS----SNQLKNLHFNSC-ENL-KAIDTDTPNLLSFTFSYD 320 (340)
Q Consensus 273 L~l~~c~~i~~~~~~----~~~L~~L~l~~c-~~l-~~~~~~~p~L~~L~~~~~ 320 (340)
+++.. .++.++.. |.+|+++.+... ..+ ......|++|+++.+...
T Consensus 325 i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 325 IDLPY--LVEEIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp ECCCT--TCCEECTTTTTTCTTCCEECCCTTCCEECTTTBTTCTTCCEEEEEGG
T ss_pred EEeCC--cccEEhHHhccCCCCCCEEEECccccEehHHHhhCCCCCCEEEECCC
Confidence 88863 24444432 678888888543 222 233456789999988763
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=80.64 E-value=2.5 Score=37.04 Aligned_cols=33 Identities=12% Similarity=0.122 Sum_probs=17.7
Q ss_pred HcCCCcccEEecccCCCCccccc----ccccccEEEee
Q 040471 264 ISKFPLLEDLLLRFCRLPEKVKI----SSNQLKNLHFN 297 (340)
Q Consensus 264 ~~~~~~L~~L~l~~c~~i~~~~~----~~~~L~~L~l~ 297 (340)
+.+|++|+.+.+..+ .++.++. .|.+|+++.+.
T Consensus 282 F~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 282 CSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECC
T ss_pred ccccccccccccccc-ccceehhhhhcCCCCCCEEEcC
Confidence 345677777766532 2333322 25666666663
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=74.77 E-value=1.4 Score=38.72 Aligned_cols=98 Identities=14% Similarity=0.124 Sum_probs=59.0
Q ss_pred ccCCCCccEEEeece--eCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEeccc--CCCcccccccCC
Q 040471 145 IFSAKSMATLSLFGC--RMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISAC--WGLKNLCVSKAH 220 (340)
Q Consensus 145 ~~~~~~L~~L~L~~~--~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c--~~~~~~~~~~~~ 220 (340)
+..|.+|+.+.+... .++. .....+.+|+.+.+...-... -...+..|++|+.+.+.+. ..+..-...+|.
T Consensus 236 f~~~~~L~~i~lp~~v~~I~~---~aF~~~~~l~~i~l~~~i~~i--~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~ 310 (379)
T 4h09_A 236 FYGMKALDEIAIPKNVTSIGS---FLLQNCTALKTLNFYAKVKTV--PYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV 310 (379)
T ss_dssp TTTCSSCCEEEECTTCCEECT---TTTTTCTTCCEEEECCCCSEE--CTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred ccCCccceEEEcCCCccEeCc---cccceeehhccccccccceec--cccccccccccccccccccccceehhhhhcCCC
Confidence 455888999988763 2332 234567888888875431110 0123567899999988653 234444566788
Q ss_pred CCceEEecccccccceee-ecCcCcceE
Q 040471 221 KLKKLAIYTFYKDIGIVE-IVVPSLQQQ 247 (340)
Q Consensus 221 ~L~~L~i~~~~~~~~~~~-~~~p~L~~l 247 (340)
+|+.+.+...-..+..-. .+|.+|+.+
T Consensus 311 ~L~~i~lp~~l~~I~~~aF~~C~~L~~i 338 (379)
T 4h09_A 311 KLSSVTLPTALKTIQVYAFKNCKALSTI 338 (379)
T ss_dssp TCCEEECCTTCCEECTTTTTTCTTCCCC
T ss_pred CCCEEEcCccccEEHHHHhhCCCCCCEE
Confidence 899988854321222222 256777776
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=74.36 E-value=2.6 Score=30.88 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=31.8
Q ss_pred cCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEee
Q 040471 140 ILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYI 185 (340)
Q Consensus 140 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 185 (340)
.+|..+ -++|+.|+|+++.+..-....+..+++|++|+|.++.+
T Consensus 24 ~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 24 SLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 555432 24699999999887653334456788999999998887
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=36.09 E-value=30 Score=23.73 Aligned_cols=34 Identities=15% Similarity=0.080 Sum_probs=15.1
Q ss_pred cCCCCcEEEeccc-CCCcccccccCCCCceEEecc
Q 040471 196 ECPSLEDFEISAC-WGLKNLCVSKAHKLKKLAIYT 229 (340)
Q Consensus 196 ~~p~L~~L~l~~c-~~~~~~~~~~~~~L~~L~i~~ 229 (340)
+|.+|+++.|-.. ..+..-.+.+|.+|+.+.+.+
T Consensus 18 ~c~~L~~i~iP~~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 18 GNTVIREITVQPNIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TCTTCCCEEECTTSSCCCTTSSTTCTTCCCEEECC
T ss_pred CCCCCcEEEcCCchheEcHHHHhccCCccEEEEcC
Confidence 4445555544321 223333344455555555543
Done!