BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040474
(283 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NME|A Chain A, Structure Of A Plant Phosphatase
pdb|3NME|B Chain B, Structure Of A Plant Phosphatase
Length = 294
Score = 419 bits (1078), Expect = e-118, Method: Compositional matrix adjust.
Identities = 200/281 (71%), Positives = 227/281 (80%)
Query: 3 YNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDI 62
YNFIRPDLIVGSCLQTPEDVDKLR+IGVKTIFCLQQDPDLEYFGVDI +IQ YAK Y DI
Sbjct: 13 YNFIRPDLIVGSCLQTPEDVDKLRKIGVKTIFCLQQDPDLEYFGVDISSIQAYAKKYSDI 72
Query: 63 QHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVL 122
QHIR EIRDFDAFDLR RLPAV+ LYKA+ RNGGVTYVH TAG GRAPAVAL Y FWV
Sbjct: 73 QHIRCEIRDFDAFDLRXRLPAVVGTLYKAVKRNGGVTYVHSTAGXGRAPAVALTYXFWVQ 132
Query: 123 GYKLNEAHQLLLSKRPCFPKLDAIKSATADILTGLRKELVTFSWKGKNCTSVEISGIDIG 182
GYKL EAH+LL SKR CFPKLDAI++AT DILTGL+++ VT + K K + VEISG+DIG
Sbjct: 133 GYKLXEAHKLLXSKRSCFPKLDAIRNATIDILTGLKRKTVTLTLKDKGFSRVEISGLDIG 192
Query: 183 WGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNKYELVSSPNKDGHVNNYVQV 242
WGQR+PLT K G WILKRELPEG++EYKYI+DGEWT N+ E PNKDGH NNY +V
Sbjct: 193 WGQRIPLTLGKGTGFWILKRELPEGQFEYKYIIDGEWTHNEAEPFIGPNKDGHTNNYAKV 252
Query: 243 DDAPSSVSEALRNRLTSDDFDLTKDELHKIRAFLEACPDYE 283
D P+SV R RL+S+D +L ++E K+ FLE C + E
Sbjct: 253 VDDPTSVDGTTRERLSSEDPELLEEERSKLIQFLETCSEAE 293
>pdb|3LJ8|A Chain A, Crystal Structure Of Mkp-4
Length = 146
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 14/132 (10%)
Query: 6 IRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHI 65
I P+L +GS + +++ L ++G++ I L P+L F + K D +
Sbjct: 6 ILPNLYLGSA-RDSANLESLAKLGIRYI--LNVTPNLPNF---------FEKN-GDFHYK 52
Query: 66 RAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125
+ I D + +L P I + +A+++N GV VHC AG+ R+ V +AY+ L
Sbjct: 53 QIPISDHWSQNLSRFFPEAIEFIDEALSQNCGVL-VHCLAGVSRSVTVTVAYLMQKLHLS 111
Query: 126 LNEAHQLLLSKR 137
LN+A+ L+ K+
Sbjct: 112 LNDAYDLVKRKK 123
>pdb|1Z0M|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
pdb|1Z0M|B Chain B, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
pdb|1Z0M|C Chain C, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
Length = 96
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Query: 164 FSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNK 223
F W G V +SG W ++PLT + + IL +LPEG ++YK+ VDG+WT +
Sbjct: 15 FRWTG-GGKEVYLSGSFNNWS-KLPLTRSQNNFVAIL--DLPEGEHQYKFFVDGQWTHDP 70
Query: 224 YELVSSPNKDGHVNNYVQV 242
E + + ++ G VNN +QV
Sbjct: 71 SEPIVT-SQLGTVNNIIQV 88
>pdb|1Z0N|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
pdb|1Z0N|B Chain B, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
pdb|1Z0N|C Chain C, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
Length = 96
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 164 FSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNK 223
F W G V +SG W ++P T + + IL +LPEG ++YK+ VDG+WT +
Sbjct: 15 FRWTG-GGKEVYLSGSFNNWS-KLPXTRSQNNFVAIL--DLPEGEHQYKFFVDGQWTHDP 70
Query: 224 YELVSSPNKDGHVNNYVQV 242
E + + ++ G VNN +QV
Sbjct: 71 SEPIVT-SQLGTVNNIIQV 88
>pdb|2HCM|A Chain A, Crystal Structure Of Mouse Putative Dual Specificity
Phosphatase Complexed With Zinc Tungstate, New York
Structural Genomics Consortium
Length = 164
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 50 IAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGR 109
++ Q+ + +R + D A DL L + + A+ R+GG V+C G R
Sbjct: 44 VSRQQPGPRAPGVAELRVPVFDDPAEDLLTHLEPTCAAMEAAV-RDGGSCLVYCKNGRSR 102
Query: 110 APAVALAYMFWVLGYKLNEAHQLLLSKRP 138
+ AV AY+ G+ L+ A Q++ S RP
Sbjct: 103 SAAVCTAYLMRHRGHSLDRAFQMVKSARP 131
>pdb|2HXP|A Chain A, Crystal Structure Of The Human Phosphatase (Dusp9)
Length = 155
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 14/132 (10%)
Query: 6 IRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHI 65
I P+L +GS + +++ L ++G++ I L P+L F + K D +
Sbjct: 9 ILPNLYLGSA-RDSANLESLAKLGIRYI--LNVTPNLPNF---------FEKN-GDFHYK 55
Query: 66 RAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125
+ I D + +L P I + +A+++N GV VH AG+ R+ V +AY+ L
Sbjct: 56 QIPISDHWSQNLSRFFPEAIEFIDEALSQNCGVL-VHSLAGVSRSVTVTVAYLMQKLHLS 114
Query: 126 LNEAHQLLLSKR 137
LN+A+ L+ K+
Sbjct: 115 LNDAYDLVKRKK 126
>pdb|2F15|A Chain A, Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta2 Subunit
Length = 96
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 158 RKELVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDG 217
R ++ +S GK V ISG W ++PL K ++ +LPEG ++YK+ VDG
Sbjct: 10 RPTVIRWSEGGK---EVFISGSFNNWSTKIPLI--KSHNDFVAILDLPEGEHQYKFFVDG 64
Query: 218 EWTCNKYELVSSPNKDGHVNNYVQVDDA 245
+W + E V + ++ G +NN + V +
Sbjct: 65 QWVHDPSEPVVT-SQLGTINNLIHVKKS 91
>pdb|1MKP|A Chain A, Crystal Structure Of Pyst1 (Mkp3)
Length = 144
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 6 IRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHI 65
I P L +G C + ++D L + G+K I L P+L + + ++
Sbjct: 7 ILPFLYLG-CAKDSTNLDVLEEFGIKYI--LNVTPNLP----------NLFENAGEFKYK 53
Query: 66 RAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125
+ I D + +L P IS + +A +N GV VH AG+ R+ V +AY+ L
Sbjct: 54 QIPISDHWSQNLSQFFPEAISFIDEARGKNCGVL-VHSLAGISRSVTVTVAYLMQKLNLS 112
Query: 126 LNEAHQLLLSKR 137
+N+A+ ++ K+
Sbjct: 113 MNDAYDIVKMKK 124
>pdb|2E0T|A Chain A, Crystal Structure Of Catalytic Domain Of Dual Specificity
Phosphatase 26, Ms0830 From Homo Sapiens
Length = 151
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%)
Query: 62 IQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWV 121
I+++ E D AFD+ + +++A+++ GG VHC G+ R+ + LAY+
Sbjct: 51 IRYLGVEAHDSPAFDMSIHFQTAADFIHRALSQPGGKILVHCAVGVSRSATLVLAYLMLY 110
Query: 122 LGYKLNEAHQLLLSKRPCFPKLDAIKSATA 151
L EA + + R P ++ A
Sbjct: 111 HHLTLVEAIKKVKDHRGIIPNRGFLRQLLA 140
>pdb|2ESB|A Chain A, Crystal Structure Of Human Dusp18
Length = 188
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 33/159 (20%)
Query: 50 IAIQEYAKTYDDIQHIRAEIRD------FDAFDLRMRLPAVISKLYKAINRNGGVTYVHC 103
++++ Y+DIQ+++ + D D FD I+ ++ G T +HC
Sbjct: 52 VSVEVVNTLYEDIQYMQVPVADSPNSRLCDFFD-------PIADHIHSVEMKQGRTLLHC 104
Query: 104 TAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKSATADILTGLRKELV 162
AG+ R+ A+ LAY+ L +AH S RP P +G ++L+
Sbjct: 105 AAGVSRSAALCLAYLMKYHAMSLLDAHTWTKSCRPIIRPN------------SGFWEQLI 152
Query: 163 TFSWK--GKNCTSVEISGIDIGWGQRMPLTFDKEQGLWI 199
+ ++ GKN +V + +G +P ++KE L I
Sbjct: 153 HYEFQLFGKN--TVHMVSSPVGM---IPDIYEKEVRLMI 186
>pdb|1VHR|A Chain A, Human Vh1-Related Dual-Specificity Phosphatase
pdb|1VHR|B Chain B, Human Vh1-Related Dual-Specificity Phosphatase
Length = 184
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 10/141 (7%)
Query: 4 NFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDD-- 61
N + P + VG+ +D+ KL+++G+ + + G + + A Y D
Sbjct: 30 NEVTPRIYVGNA-SVAQDIPKLQKLGITHVLNAAE-------GRSFMHVNTNANFYKDSG 81
Query: 62 IQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWV 121
I ++ + D F+L + +A+ + G VHC G R+P + +AY+
Sbjct: 82 ITYLGIKANDTQEFNLSAYFERAADFIDQALAQKNGRVLVHCREGYSRSPTLVIAYLMMR 141
Query: 122 LGYKLNEAHQLLLSKRPCFPK 142
+ A ++ R P
Sbjct: 142 QKMDVKSALSIVRQNREIGPN 162
>pdb|3F81|A Chain A, Interaction Of Vhr With Sa3
pdb|3F81|B Chain B, Interaction Of Vhr With Sa3
Length = 183
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 10/141 (7%)
Query: 4 NFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDD-- 61
N + P + VG+ +D+ KL+++G+ + + G + + A Y D
Sbjct: 29 NEVTPRIYVGNA-SVAQDIPKLQKLGITHVLNAAE-------GRSFMHVNTNANFYKDSG 80
Query: 62 IQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWV 121
I ++ + D F+L + +A+ + G VHC G R+P + +AY+
Sbjct: 81 ITYLGIKANDTQEFNLSAYFERAADFIDQALAQKNGRVLVHCREGYSRSPTLVIAYLMMR 140
Query: 122 LGYKLNEAHQLLLSKRPCFPK 142
+ A ++ R P
Sbjct: 141 QKMDVKSALSIVRQNREIGPN 161
>pdb|1YZ4|A Chain A, Crystal Structure Of Dusp15
pdb|1YZ4|B Chain B, Crystal Structure Of Dusp15
Length = 160
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 17/131 (12%)
Query: 41 DLEYFG----VDIIAIQEYAKTY-DDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRN 95
DL+ G II+I E + DI ++R + D ++ I+ ++ N
Sbjct: 25 DLDQLGRNKITHIISIHESPQPLLQDITYLRIPVADTPEVPIKKHFKECINFIH-CCRLN 83
Query: 96 GGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILT 155
GG VH AG+ R+ + AY+ V G + + + + RP A+
Sbjct: 84 GGNCLVHSFAGISRSTTIVTAYVMTVTGLGWRDVLEAIKATRP-----------IANPNP 132
Query: 156 GLRKELVTFSW 166
G R++L F W
Sbjct: 133 GFRQQLEEFGW 143
>pdb|2WGP|A Chain A, Crystal Structure Of Human Dual Specificity Phosphatase 14
pdb|2WGP|B Chain B, Crystal Structure Of Human Dual Specificity Phosphatase 14
Length = 190
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 59 YDDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYM 118
+ ++++ + D + + V K++ +++R G T VHC AG+ R+ + +AY+
Sbjct: 67 WPQFEYVKVPLADMPHAPIGLYFDTVADKIH-SVSRKHGATLVHCAAGVSRSATLCIAYL 125
Query: 119 FWVLGYKLNEAHQLLLSKRP 138
L EA+ + ++RP
Sbjct: 126 MKFHNVCLLEAYNWVKARRP 145
>pdb|4HRF|A Chain A, Atomic Structure Of Dusp26
pdb|4HRF|B Chain B, Atomic Structure Of Dusp26
pdb|4HRF|C Chain C, Atomic Structure Of Dusp26
pdb|4HRF|D Chain D, Atomic Structure Of Dusp26
Length = 160
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%)
Query: 62 IQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWV 121
I+++ E D AFD+ + +++A+++ GG VH G+ R+ + LAY+
Sbjct: 52 IRYLGVEAHDSPAFDMSIHFQTAADFIHRALSQPGGKILVHSAVGVSRSATLVLAYLMLY 111
Query: 122 LGYKLNEAHQLLLSKRPCFPK 142
L EA + + R P
Sbjct: 112 HHLTLVEAIKKVKDHRGIIPN 132
>pdb|1J4X|A Chain A, Human Vh1-Related Dual-Specificity Phosphatase C124s
Mutant- Peptide Complex
Length = 184
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 56/141 (39%), Gaps = 10/141 (7%)
Query: 4 NFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDD-- 61
N + P + VG+ +D+ KL+++G+ + + G + + A Y D
Sbjct: 30 NEVTPRIYVGNA-SVAQDIPKLQKLGITHVLNAAE-------GRSFMHVNTNANFYKDSG 81
Query: 62 IQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWV 121
I ++ + D F+L + +A+ + G VH G R+P + +AY+
Sbjct: 82 ITYLGIKANDTQEFNLSAYFERAADFIDQALAQKNGRVLVHSREGYSRSPTLVIAYLMMR 141
Query: 122 LGYKLNEAHQLLLSKRPCFPK 142
+ A ++ R P
Sbjct: 142 QKMDVKSALSIVRQNREIGPN 162
>pdb|2Y96|A Chain A, Structure Of Human Dual-Specificity Phosphatase 27
pdb|2Y96|B Chain B, Structure Of Human Dual-Specificity Phosphatase 27
Length = 219
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
Query: 61 DIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFW 120
DIQ+ E D FDL + + + +A++ + VHC G R+ + LAY+
Sbjct: 104 DIQYHGVEADDLPTFDLSVFFYPAAAFIDRALSDDHSKILVHCVMGRSRSATLVLAYLMI 163
Query: 121 VLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILTGLRKELV 162
L +A Q + R P +K L L K+LV
Sbjct: 164 HKDMTLVDAIQQVAKNRCVLPNRGFLKQ-----LRELDKQLV 200
>pdb|2G6Z|A Chain A, Crystal Structure Of Human Dusp5
pdb|2G6Z|B Chain B, Crystal Structure Of Human Dusp5
pdb|2G6Z|C Chain C, Crystal Structure Of Human Dusp5
Length = 211
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 92 INRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKR 137
+ GG VH AG+ R+P + +AY+ ++L EA + +R
Sbjct: 79 VREKGGKVLVHSEAGISRSPTICMAYLMKTKQFRLKEAFDYIKQRR 124
>pdb|3S4E|A Chain A, Crystal Structrue Of A Novel Mitogen-Activated Protein
Kinase Phosphatase, Skrp1
Length = 144
Score = 34.7 bits (78), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 16/133 (12%)
Query: 6 IRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHI 65
I+P L++GS D+D L++ V I + +GV+ + ++ TY I
Sbjct: 7 IKPWLLLGS-QDAAHDLDTLKKNKVTHILNVA-------YGVENAFLSDF--TYKSIS-- 54
Query: 66 RAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125
I D ++ P + +A R GV VH AG+ RA A+ + ++
Sbjct: 55 ---ILDLPETNILSYFPECFEFIEEA-KRKDGVVLVHSNAGVSRAAAIVIGFLMNSEQTS 110
Query: 126 LNEAHQLLLSKRP 138
A L+ + RP
Sbjct: 111 FTSAFSLVKNARP 123
>pdb|1V3A|A Chain A, Structure Of Human Prl-3, The Phosphatase Associated With
Cancer Metastasis
Length = 173
Score = 34.3 bits (77), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 96 GGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKR 137
G VHC AGLGRAP V +A G K +A Q + KR
Sbjct: 97 GSCVAVHCVAGLGRAP-VLVALALIESGMKYEDAIQFIRQKR 137
>pdb|1R6H|A Chain A, Solution Structure Of Human Prl-3
Length = 172
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 96 GGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKR 137
G VHC AGLGRAP V +A G K +A Q + KR
Sbjct: 100 GSCVAVHCVAGLGRAP-VLVALALIESGMKYEDAIQFIRQKR 140
>pdb|2R0B|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase-like
Serine/threonine/tyrosine-interacting Protein
Length = 154
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 96 GGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPC 139
GG VH AG+ R+ A +AY+ G K +A + +R C
Sbjct: 90 GGKVLVHGNAGISRSAAFVIAYIMETFGMKYRDAFAYVQERRFC 133
>pdb|1RXD|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
4a1
pdb|1RXD|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
4a1
pdb|1RXD|C Chain C, Crystal Structure Of Human Protein Tyrosine Phosphatase
4a1
Length = 159
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 96 GGVTYVHCTAGLGRAPA-VALAYMFWVLGYKLNEAHQLLLSKR 137
G VHC AGLGRAP VALA + G K +A Q + KR
Sbjct: 96 GCCIAVHCVAGLGRAPVLVALALIEG--GXKYEDAVQFIRQKR 136
>pdb|1ZCK|A Chain A, Native Structure Prl-1 (Ptp4a1)
pdb|1ZCK|B Chain B, Native Structure Prl-1 (Ptp4a1)
pdb|1ZCK|C Chain C, Native Structure Prl-1 (Ptp4a1)
Length = 154
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 96 GGVTYVHCTAGLGRAPA-VALAYMFWVLGYKLNEAHQLLLSKR 137
G VHC AGLGRAP VALA + G K +A Q + KR
Sbjct: 91 GCCIAVHCVAGLGRAPVLVALALIEG--GXKYEDAVQFIRQKR 131
>pdb|2GWO|A Chain A, Crystal Structure Of Tmdp
pdb|2GWO|B Chain B, Crystal Structure Of Tmdp
pdb|2GWO|C Chain C, Crystal Structure Of Tmdp
pdb|2GWO|D Chain D, Crystal Structure Of Tmdp
Length = 198
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 54/137 (39%), Gaps = 12/137 (8%)
Query: 8 PDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYD--DIQHI 65
P L +G D KL Q+G+ + + F VD AK Y +++
Sbjct: 51 PSLFLGDAY-AARDKSKLIQLGITHVV----NAAAGKFQVD-----TGAKFYRGMSLEYY 100
Query: 66 RAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125
E D FDL + V + A++ G VHC G+ R+ + LA++
Sbjct: 101 GIEADDNPFFDLSVYFLPVARYIRAALSVPQGRVLVHCAMGVSRSATLVLAFLMICENMT 160
Query: 126 LNEAHQLLLSKRPCFPK 142
L EA Q + + R P
Sbjct: 161 LVEAIQTVQAHRNICPN 177
>pdb|3RZ2|A Chain A, Crystal Of Prl-1 Complexed With Peptide
pdb|3RZ2|B Chain B, Crystal Of Prl-1 Complexed With Peptide
Length = 189
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 96 GGVTYVHCTAGLGRAPA-VALAYMFWVLGYKLNEAHQLLLSKR 137
G VHC AGLGRAP VALA + G K +A Q + KR
Sbjct: 117 GCCIAVHCVAGLGRAPVLVALALIEG--GMKYEDAVQFIRQKR 157
>pdb|1X24|A Chain A, Prl-1 (Ptp4a)
pdb|1X24|B Chain B, Prl-1 (Ptp4a)
Length = 180
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 96 GGVTYVHCTAGLGRAPA-VALAYMFWVLGYKLNEAHQLLLSKR 137
G VHC AGLGRAP VALA + G K +A Q + KR
Sbjct: 117 GCCIAVHCVAGLGRAPVLVALALIEG--GMKYEDAVQFIRQKR 157
>pdb|2PQ5|A Chain A, Crystal Structure Of Dual Specificity Protein Phosphatase
13 (Dusp13)
pdb|2PQ5|B Chain B, Crystal Structure Of Dual Specificity Protein Phosphatase
13 (Dusp13)
pdb|2PQ5|C Chain C, Crystal Structure Of Dual Specificity Protein Phosphatase
13 (Dusp13)
pdb|2PQ5|D Chain D, Crystal Structure Of Dual Specificity Protein Phosphatase
13 (Dusp13)
Length = 205
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 54/137 (39%), Gaps = 12/137 (8%)
Query: 8 PDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYD--DIQHI 65
P L +G D KL Q+G+ + + F VD AK Y +++
Sbjct: 51 PSLFLGDAY-AARDKSKLIQLGITHVV----NAAAGKFQVD-----TGAKFYRGMSLEYY 100
Query: 66 RAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125
E D FDL + V + A++ G VHC G+ R+ + LA++
Sbjct: 101 GIEADDNPFFDLSVYFLPVARYIRAALSVPQGRVLVHCAMGVSRSATLVLAFLMIYENMT 160
Query: 126 LNEAHQLLLSKRPCFPK 142
L EA Q + + R P
Sbjct: 161 LVEAIQTVQAHRNICPN 177
>pdb|2OUD|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mkp5
Length = 177
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 101 VHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKSA---TADILTG 156
+HC AG+ R+ + +AY+ + +A++ + KRP P L+ + D+ G
Sbjct: 92 IHCQAGVSRSATIVIAYLMKHTRMTMTDAYKFVKGKRPIISPNLNFMGQLLEFEEDLNNG 151
Query: 157 LRKELVTFSWKGKNCTSVEISGID 180
+ ++T G E + ++
Sbjct: 152 VTPRILTPKLMGVETVVKEAAALE 175
>pdb|1ZZW|A Chain A, Crystal Structure Of Catalytic Domain Of Human Map Kinase
Phosphatase 5
pdb|1ZZW|B Chain B, Crystal Structure Of Catalytic Domain Of Human Map Kinase
Phosphatase 5
Length = 149
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 101 VHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLD 144
+HC AG+ R+ + +AY+ + +A++ + KRP P L+
Sbjct: 88 IHCQAGVSRSATIVIAYLMKHTRMTMTDAYKFVKGKRPIISPNLN 132
>pdb|1M3G|A Chain A, Solution Structure Of The Catalytic Domain Of Mapk
Phosphatase Pac-1: Insights Into Substrate-Induced
Enzymatic Activation
Length = 145
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 92 INRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKR 137
+ +GG VH AG+ R+ + LAY+ +L+EA + +R
Sbjct: 77 VKNSGGRVLVHSQAGISRSATICLAYLMQSRRVRLDEAFDFVKQRR 122
>pdb|2J16|B Chain B, Apo & Sulphate Bound Forms Of Sdp-1
Length = 182
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 81 LPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSK 136
LP++ S ++ A + + +HC GL R+ + +AY+ L ++ LL S+
Sbjct: 103 LPSLTSIIHAATTKREKI-LIHCQCGLSRSATLIIAYIMKYHNLSLRHSYDLLKSR 157
>pdb|3RGO|A Chain A, Crystal Structure Of Ptpmt1
Length = 157
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 96 GGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILT 155
G YVHC AG R+ + AY+ V + EA + + R +I+ + ++L
Sbjct: 89 GQCVYVHCKAGRSRSATMVAAYLIQVHNWSPEEAIEAIAKIRSHI----SIRPSQLEVLK 144
Query: 156 GLRKELVTFSWKG 168
KE+ + K
Sbjct: 145 EFHKEITARAAKN 157
>pdb|1YNF|A Chain A, Crystal Structure Of N-Succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
pdb|1YNF|B Chain B, Crystal Structure Of N-Succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
pdb|1YNF|C Chain C, Crystal Structure Of N-Succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
pdb|1YNF|D Chain D, Crystal Structure Of N-Succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
pdb|1YNF|E Chain E, Crystal Structure Of N-Succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
pdb|1YNF|F Chain F, Crystal Structure Of N-Succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
Length = 458
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 17 QTPEDVDKLRQIGVKTIFCLQQDPDLEYFGV---DIIAI----------QEYAKTYDDIQ 63
+ E V +L Q+ + + QQ+PD+ GV D+IA+ Q +A+ +
Sbjct: 227 EASEAVARLNQVNPQQVIFAQQNPDVIDQGVFHNDVIAVSNRQVLFCHQQAFARQSQLLA 286
Query: 64 HIRAEIRDFDAFDL 77
++RA + F A ++
Sbjct: 287 NLRARVNGFXAIEV 300
>pdb|1YNI|A Chain A, Crystal Structure Of N-succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
pdb|1YNI|B Chain B, Crystal Structure Of N-succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
pdb|1YNI|C Chain C, Crystal Structure Of N-succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
pdb|1YNI|D Chain D, Crystal Structure Of N-succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
Length = 458
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 17 QTPEDVDKLRQIGVKTIFCLQQDPDLEYFGV---DIIAI----------QEYAKTYDDIQ 63
+ E V +L Q+ + + QQ+PD+ GV D+IA+ Q +A+ +
Sbjct: 227 EASEAVARLNQVNPQQVIFAQQNPDVIDQGVFHNDVIAVSNRQVLFCHQQAFARQSQLLA 286
Query: 64 HIRAEIRDFDAFDL 77
++RA + F A ++
Sbjct: 287 NLRARVNGFMAIEV 300
>pdb|1YNH|A Chain A, Crystal Structure Of N-Succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
pdb|1YNH|B Chain B, Crystal Structure Of N-Succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
pdb|1YNH|C Chain C, Crystal Structure Of N-Succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
pdb|1YNH|D Chain D, Crystal Structure Of N-Succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
Length = 458
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 17 QTPEDVDKLRQIGVKTIFCLQQDPDLEYFGV---DIIAI----------QEYAKTYDDIQ 63
+ E V +L Q+ + + QQ+PD+ GV D+IA+ Q +A+ +
Sbjct: 227 EASEAVARLNQVNPQQVIFAQQNPDVIDQGVFHNDVIAVSNRQVLFCHQQAFARQSQLLA 286
Query: 64 HIRAEIRDFDAFDL 77
++RA + F A ++
Sbjct: 287 NLRARVNGFMAIEV 300
>pdb|1WRM|A Chain A, Crystal Structure Of Jsp-1
Length = 165
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 51/137 (37%), Gaps = 19/137 (13%)
Query: 4 NFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDI- 62
N I P L +G+ + D ++L + V I + GV + I ++
Sbjct: 8 NKILPGLYIGN-FKDARDAEQLSKNKVTHILSVHDSARPMLEGVKYLCIPAADSPSQNLT 66
Query: 63 QHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVL 122
+H + I+ LR G VHC AG+ R+ + +AY+ V
Sbjct: 67 RHFKESIKFIHECRLR-----------------GESCLVHCLAGVSRSVTLVIAYIMTVT 109
Query: 123 GYKLNEAHQLLLSKRPC 139
+ +A + + R C
Sbjct: 110 DFGWEDALHTVRAGRSC 126
>pdb|1L8K|A Chain A, T Cell Protein-Tyrosine Phosphatase Structure
Length = 314
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 91 AINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAH--QLLLSKR 137
++N + G +HC+AG+GR+ +L VL K ++ + Q+LL+ R
Sbjct: 204 SLNPDHGPAVIHCSAGIGRSGTFSLVDTCLVLMEKGDDINIKQVLLNMR 252
>pdb|1XM2|A Chain A, Crystal Structure Of Human Prl-1
pdb|1XM2|B Chain B, Crystal Structure Of Human Prl-1
pdb|1XM2|C Chain C, Crystal Structure Of Human Prl-1
pdb|1XM2|D Chain D, Crystal Structure Of Human Prl-1
pdb|1XM2|E Chain E, Crystal Structure Of Human Prl-1
pdb|1XM2|F Chain F, Crystal Structure Of Human Prl-1
Length = 173
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 96 GGVTYVHCTAGLGRAPA-VALAYMFWVLGYKLNEAHQLLLSKR 137
G VH AGLGRAP VALA + G K +A Q + KR
Sbjct: 97 GCCIAVHSVAGLGRAPVLVALALIEG--GXKYEDAVQFIRQKR 137
>pdb|3NM1|A Chain A, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM1|B Chain B, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM1|C Chain C, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM1|D Chain D, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM1|E Chain E, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM1|F Chain F, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
Length = 540
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 11/48 (22%)
Query: 1 MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDL-EYFGV 47
M + PD+++G + PE+VD+L ++G PD+ +Y GV
Sbjct: 100 MIRKLVGPDMVIGWSVGFPEEVDELSKMG----------PDMVDYIGV 137
>pdb|3NL2|A Chain A, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL2|B Chain B, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL2|C Chain C, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL2|D Chain D, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL2|E Chain E, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL2|F Chain F, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL3|A Chain A, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL3|B Chain B, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL3|C Chain C, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL3|D Chain D, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL3|E Chain E, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL3|F Chain F, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL5|A Chain A, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL5|B Chain B, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL5|C Chain C, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL6|A Chain A, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL6|B Chain B, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL6|C Chain C, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM3|A Chain A, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM3|B Chain B, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM3|C Chain C, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM3|D Chain D, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM3|E Chain E, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM3|F Chain F, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
Length = 540
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 11/48 (22%)
Query: 1 MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDL-EYFGV 47
M + PD+++G + PE+VD+L ++G PD+ +Y GV
Sbjct: 100 MIRKLVGPDMVIGWSVGFPEEVDELSKMG----------PDMVDYIGV 137
>pdb|3EZZ|A Chain A, Crystal Structure Of Human Mkp-2
pdb|3EZZ|B Chain B, Crystal Structure Of Human Mkp-2
pdb|3EZZ|C Chain C, Crystal Structure Of Human Mkp-2
pdb|3EZZ|D Chain D, Crystal Structure Of Human Mkp-2
pdb|3EZZ|E Chain E, Crystal Structure Of Human Mkp-2
pdb|3EZZ|F Chain F, Crystal Structure Of Human Mkp-2
Length = 144
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 97 GVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKR 137
G VH AG+ R+ + LAY+ +L EA + + +R
Sbjct: 82 GRVLVHSQAGISRSATICLAYLMMKKRVRLEEAFEFVKQRR 122
>pdb|2P4D|A Chain A, Structure-Assisted Discovery Of Variola Major H1
Phosphatase Inhibitors
Length = 172
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 50 IAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGR 109
+ +Y +I I + D D+ V + L K RN V VHC AG+ R
Sbjct: 59 LTXDKYTLPNSNINIIHIPLVDDTTTDISKYFDDVTAFLSKCDQRNEPVL-VHCVAGVNR 117
Query: 110 APAVALAYM 118
+ A LAY+
Sbjct: 118 SGAXILAYL 126
>pdb|2Y8K|A Chain A, Structure Of Ctgh5-Cbm6, An Arabinoxylan-Specific Xylanase
Length = 491
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 152 DILTGL-RKELVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYE 210
+ LTG R E F W G + + +++G GQ P ++G+ I K G Y
Sbjct: 335 NFLTGTTRIEAEDFDWGGNGVSYYDTDSVNVG-GQYRP-----DEGVDIEKTSDTGGGYN 388
Query: 211 YKYIVDGEW 219
+I +GEW
Sbjct: 389 VGWISEGEW 397
>pdb|1ZCL|A Chain A, Prl-1 C104s Mutant In Complex With Sulfate
pdb|1ZCL|B Chain B, Prl-1 C104s Mutant In Complex With Sulfate
Length = 180
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 96 GGVTYVHCTAGLGRAPA-VALAYMFWVLGYKLNEAHQLLLSKR 137
G VH AGLGRAP VALA + G K +A Q + KR
Sbjct: 117 GCCIAVHSVAGLGRAPVLVALALIEG--GMKYEDAVQFIRQKR 157
>pdb|2Q05|A Chain A, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|B Chain B, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|C Chain C, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|D Chain D, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
Length = 195
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 50 IAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGR 109
+ +Y +I I + D D+ V + L K RN V VHC AG+ R
Sbjct: 80 LTXDKYTLPNSNINIIHIPLVDDTTTDISKYFDDVTAFLSKCDQRNEPVL-VHCAAGVNR 138
Query: 110 APAVALAYM 118
+ A LAY+
Sbjct: 139 SGAXILAYL 147
>pdb|3PSF|A Chain A, Crystal Structure Of The Spt6 Core Domain From Saccharomyces
Cerevisiae, Form Spt6(236-1259)
Length = 1030
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 173 SVEISGIDIGWGQR-MPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNKYELVSSP 230
+ E+S +D Q+ +P+++ K+ +W LK+EL + E K ++ + +++ P
Sbjct: 970 TAEVSLLDHDVKQQYVPISYSKDPSIWDLKQELEDAEEERKLMMAEARAKRTHRVINHP 1028
>pdb|3PSI|A Chain A, Crystal Structure Of The Spt6 Core Domain From Saccharomyces
Cerevisiae, Form Spt6(239-1451)
Length = 1219
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 173 SVEISGIDIGWGQR-MPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNKYELVSSP 230
+ E+S +D Q+ +P+++ K+ +W LK+EL + E K ++ + +++ P
Sbjct: 967 TAEVSLLDHDVKQQYVPISYSKDPSIWDLKQELEDAEEERKLMMAEARAKRTHRVINHP 1025
>pdb|3S4O|A Chain A, Protein Tyrosine Phosphatase (Putative) From Leishmania
Major
pdb|3S4O|B Chain B, Protein Tyrosine Phosphatase (Putative) From Leishmania
Major
Length = 167
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/19 (73%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Query: 101 VHCTAGLGRAPA-VALAYM 118
VHC AGLGRAP VALA +
Sbjct: 114 VHCVAGLGRAPILVALALV 132
>pdb|2QLV|B Chain B, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
pdb|2QLV|E Chain E, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
Length = 252
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 162 VTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQ-GLWILKRELPEGRYEYKYIVDGEWT 220
V W+ + + V ++G W + + L D + G + +K L G + +++IVD E
Sbjct: 6 VEIRWQ-QGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVDNELR 64
Query: 221 CNKYELVSSPNKDGHVNNYVQV 242
+ + L ++ ++ G+ NY++V
Sbjct: 65 VSDF-LPTATDQMGNFVNYIEV 85
>pdb|3HUT|A Chain A, Crystal Structure Of A Putative Branched-Chain Amino Acid
Abc Transporter From Rhodospirillum Rubrum
Length = 358
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 165 SWK-GKNCTSVEISGIDIGWG----QRMPLTFDKEQGLWILKRELPEGRYEYKYIVD 216
+W G TSV + G+ WG Q F+ G ++ E+P G + ++D
Sbjct: 132 AWXIGDGFTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVID 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,998,115
Number of Sequences: 62578
Number of extensions: 385275
Number of successful extensions: 995
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 960
Number of HSP's gapped (non-prelim): 56
length of query: 283
length of database: 14,973,337
effective HSP length: 98
effective length of query: 185
effective length of database: 8,840,693
effective search space: 1635528205
effective search space used: 1635528205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)