Query 040474
Match_columns 283
No_of_seqs 344 out of 1878
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 08:48:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040474.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040474hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1718 Dual specificity phosp 100.0 3.6E-32 7.9E-37 213.9 14.4 163 3-194 17-180 (198)
2 smart00195 DSPc Dual specifici 100.0 1.1E-29 2.3E-34 202.1 15.6 130 3-148 1-131 (138)
3 cd00127 DSPc Dual specificity 100.0 1.7E-27 3.6E-32 189.4 15.1 132 3-148 2-134 (139)
4 KOG1717 Dual specificity phosp 99.9 1.2E-27 2.7E-32 201.0 11.4 131 4-148 173-304 (343)
5 KOG1716 Dual specificity phosp 99.9 3.7E-27 8E-32 209.0 14.5 135 1-148 73-208 (285)
6 PF00782 DSPc: Dual specificit 99.9 3.5E-27 7.7E-32 186.3 11.9 125 10-148 1-126 (133)
7 PRK12361 hypothetical protein; 99.9 5.5E-24 1.2E-28 205.0 15.7 133 3-148 95-229 (547)
8 cd02859 AMPKbeta_GBD_like AMP- 99.9 2.7E-24 5.9E-29 154.2 9.9 78 160-241 2-79 (79)
9 KOG1719 Dual specificity phosp 99.9 4.6E-24 1E-28 165.9 9.8 145 5-162 27-171 (183)
10 PTZ00242 protein tyrosine phos 99.9 2.7E-22 5.8E-27 163.9 14.4 141 2-159 10-156 (166)
11 PTZ00393 protein tyrosine phos 99.9 7.9E-21 1.7E-25 160.7 13.3 133 10-161 94-229 (241)
12 cd02861 E_set_proteins_like E 99.8 6.6E-20 1.4E-24 132.6 9.7 80 160-241 2-82 (82)
13 KOG1720 Protein tyrosine phosp 99.8 2.4E-19 5.2E-24 146.7 13.0 137 2-152 52-206 (225)
14 PF05706 CDKN3: Cyclin-depende 99.8 2.8E-18 6.1E-23 137.2 9.3 118 8-130 41-168 (168)
15 PF03162 Y_phosphatase2: Tyros 99.7 2.3E-17 5E-22 134.4 12.1 125 1-138 5-132 (164)
16 TIGR01244 conserved hypothetic 99.7 1.7E-15 3.6E-20 119.9 14.0 127 2-139 1-127 (135)
17 COG2453 CDC14 Predicted protei 99.7 4.4E-16 9.5E-21 129.2 9.6 79 59-139 70-149 (180)
18 KOG1616 Protein involved in Sn 99.6 1E-15 2.2E-20 135.2 9.0 97 158-256 78-177 (289)
19 PF04273 DUF442: Putative phos 99.6 3.8E-15 8.2E-20 113.0 10.1 104 2-115 1-104 (110)
20 KOG2836 Protein tyrosine phosp 99.5 2E-13 4.2E-18 104.3 12.2 120 21-159 33-154 (173)
21 COG3453 Uncharacterized protei 99.5 4E-13 8.7E-18 100.6 13.0 124 1-135 1-124 (130)
22 PLN02727 NAD kinase 99.4 1.7E-12 3.8E-17 127.2 12.7 110 9-126 262-371 (986)
23 PF13350 Y_phosphatase3: Tyros 99.3 2.5E-11 5.4E-16 99.2 8.7 117 5-131 15-158 (164)
24 cd02858 Esterase_N_term Estera 99.2 1.5E-10 3.2E-15 84.1 9.3 77 160-239 6-83 (85)
25 KOG1572 Predicted protein tyro 99.2 3E-10 6.6E-15 95.3 12.3 125 1-138 58-189 (249)
26 smart00012 PTPc_DSPc Protein t 99.2 1E-10 2.2E-15 87.5 8.4 78 63-140 4-89 (105)
27 smart00404 PTPc_motif Protein 99.2 1E-10 2.2E-15 87.5 8.4 78 63-140 4-89 (105)
28 KOG2283 Clathrin coat dissocia 99.1 3.3E-11 7.1E-16 111.6 1.0 121 1-137 13-149 (434)
29 cd00047 PTPc Protein tyrosine 99.0 3E-09 6.5E-14 91.6 9.1 79 62-140 130-215 (231)
30 smart00194 PTPc Protein tyrosi 98.9 7.7E-09 1.7E-13 90.6 8.2 73 68-140 165-242 (258)
31 COG5350 Predicted protein tyro 98.8 8.1E-08 1.8E-12 75.4 10.0 115 23-149 26-148 (172)
32 cd02688 E_set E or "early" set 98.8 4.5E-08 9.7E-13 70.0 8.0 68 160-228 4-72 (83)
33 PRK15375 pathogenicity island 98.6 1.2E-07 2.5E-12 88.4 7.8 95 62-160 423-528 (535)
34 COG2365 Protein tyrosine/serin 98.6 2.6E-07 5.7E-12 80.5 8.3 57 84-140 124-180 (249)
35 PF14566 PTPlike_phytase: Inos 98.5 2.3E-07 5.1E-12 74.5 6.5 63 54-119 85-147 (149)
36 PHA02742 protein tyrosine phos 98.4 9.5E-07 2.1E-11 79.3 8.5 45 96-140 229-278 (303)
37 PF02922 CBM_48: Carbohydrate- 98.4 7.2E-07 1.6E-11 64.4 6.1 59 160-218 11-73 (85)
38 PHA02740 protein tyrosine phos 98.4 1.2E-06 2.6E-11 78.3 8.7 45 96-140 221-270 (298)
39 PHA02747 protein tyrosine phos 98.4 1.2E-06 2.6E-11 78.9 8.7 44 97-140 230-278 (312)
40 PF00102 Y_phosphatase: Protei 98.4 2.2E-06 4.7E-11 73.4 9.9 73 68-140 142-219 (235)
41 cd02854 Glycogen_branching_enz 98.4 2.9E-06 6.3E-11 63.3 9.0 71 160-231 5-88 (99)
42 PHA02746 protein tyrosine phos 98.3 2.4E-06 5.3E-11 77.3 9.0 44 97-140 248-296 (323)
43 PHA02738 hypothetical protein; 98.2 4.3E-06 9.3E-11 75.6 8.4 45 96-140 227-276 (320)
44 PF04179 Init_tRNA_PT: Initiat 98.0 0.00011 2.4E-09 69.0 12.8 131 5-148 291-445 (451)
45 KOG0792 Protein tyrosine phosp 98.0 2.2E-05 4.7E-10 78.4 8.4 76 68-143 1035-1116(1144)
46 KOG2386 mRNA capping enzyme, g 97.9 1.6E-05 3.4E-10 72.6 5.4 112 20-140 52-168 (393)
47 KOG0790 Protein tyrosine phosp 97.9 1.4E-05 2.9E-10 73.0 4.8 124 22-154 373-513 (600)
48 COG5599 PTP2 Protein tyrosine 97.9 1.8E-05 4E-10 67.8 4.5 48 68-119 192-241 (302)
49 KOG0791 Protein tyrosine phosp 97.7 8.1E-05 1.8E-09 66.7 6.9 76 64-139 255-332 (374)
50 cd02855 Glycogen_branching_enz 97.5 0.00099 2.2E-08 49.8 9.5 78 160-239 21-104 (106)
51 cd02860 Pullulanase_N_term Pul 97.4 0.0007 1.5E-08 50.4 7.4 67 160-229 8-85 (100)
52 COG0296 GlgB 1,4-alpha-glucan 97.4 0.00036 7.8E-09 67.7 7.2 82 159-242 35-123 (628)
53 KOG0789 Protein tyrosine phosp 97.4 0.00046 9.9E-09 64.5 7.6 74 64-140 267-349 (415)
54 cd05814 CBM20_Prei4 Prei4, N-t 97.4 0.0012 2.6E-08 50.9 8.4 46 171-216 15-67 (120)
55 PRK12568 glycogen branching en 97.1 0.0027 5.8E-08 63.1 9.2 77 160-240 138-221 (730)
56 cd02856 Glycogen_debranching_e 97.0 0.0058 1.3E-07 45.7 8.3 56 160-218 9-67 (103)
57 PF00686 CBM_20: Starch bindin 96.9 0.0041 9E-08 45.8 6.8 55 161-215 3-68 (96)
58 PRK14705 glycogen branching en 96.8 0.0063 1.4E-07 63.7 9.9 69 160-229 638-713 (1224)
59 PRK12313 glycogen branching en 96.8 0.0058 1.3E-07 60.5 9.3 68 161-229 39-112 (633)
60 cd05808 CBM20_alpha_amylase Al 96.8 0.0045 9.8E-08 45.4 6.4 43 172-215 15-63 (95)
61 cd02852 Isoamylase_N_term Isoa 96.8 0.0063 1.4E-07 46.7 7.3 58 160-219 7-72 (119)
62 PRK05402 glycogen branching en 96.8 0.0083 1.8E-07 60.3 10.0 70 160-229 131-206 (726)
63 KOG0793 Protein tyrosine phosp 96.7 0.0028 6E-08 61.3 5.5 78 63-140 894-977 (1004)
64 cd05809 CBM20_beta_amylase Bet 96.6 0.015 3.2E-07 43.2 8.1 56 160-215 3-68 (99)
65 PRK14706 glycogen branching en 96.6 0.0087 1.9E-07 59.1 8.5 76 161-240 39-121 (639)
66 cd02853 MTHase_N_term Maltooli 96.5 0.018 3.9E-07 41.4 7.8 64 160-228 8-72 (85)
67 cd05816 CBM20_DPE2_repeat2 Dis 96.5 0.048 1E-06 40.4 9.9 43 172-215 15-64 (99)
68 TIGR02402 trehalose_TreZ malto 96.4 0.014 3.1E-07 56.6 8.6 73 162-242 1-75 (542)
69 PLN02447 1,4-alpha-glucan-bran 96.3 0.034 7.3E-07 55.6 10.8 70 160-231 114-196 (758)
70 PF14671 DSPn: Dual specificit 96.3 0.01 2.3E-07 46.9 5.5 76 62-139 32-113 (141)
71 PF11806 DUF3327: Domain of un 96.1 0.068 1.5E-06 41.3 9.3 85 160-244 2-114 (122)
72 KOG4228 Protein tyrosine phosp 96.1 0.0071 1.5E-07 61.5 4.8 45 68-115 702-749 (1087)
73 cd05820 CBM20_novamyl Novamyl 95.9 0.11 2.4E-06 38.7 9.6 55 160-215 3-70 (103)
74 TIGR01515 branching_enzym alph 95.9 0.047 1E-06 53.9 9.7 69 160-229 28-103 (613)
75 cd05818 CBM20_water_dikinase P 95.9 0.12 2.6E-06 37.7 9.4 43 171-215 15-61 (92)
76 cd05813 CBM20_genethonin_1 Gen 95.8 0.035 7.5E-07 40.8 6.4 53 162-215 3-62 (95)
77 cd05817 CBM20_DSP Dual-specifi 95.6 0.066 1.4E-06 39.8 7.0 43 172-215 14-62 (100)
78 PRK05402 glycogen branching en 95.5 0.044 9.5E-07 55.2 7.5 64 161-226 29-96 (726)
79 cd05467 CBM20 The family 20 ca 95.2 0.11 2.3E-06 38.0 7.1 44 172-215 14-65 (96)
80 PRK10439 enterobactin/ferric e 95.2 0.096 2.1E-06 49.1 8.3 89 158-246 37-165 (411)
81 cd05811 CBM20_glucoamylase Glu 95.0 0.36 7.9E-06 36.0 9.6 54 161-215 8-73 (106)
82 KOG4228 Protein tyrosine phosp 95.0 0.025 5.5E-07 57.7 4.0 44 96-139 1018-1066(1087)
83 cd05810 CBM20_alpha_MTH Glucan 94.8 0.26 5.7E-06 36.4 8.1 43 172-215 16-64 (97)
84 cd01518 RHOD_YceA Member of th 94.7 0.16 3.5E-06 37.3 7.0 29 94-125 59-87 (101)
85 PLN02160 thiosulfate sulfurtra 94.4 0.12 2.6E-06 40.7 5.9 19 94-113 79-97 (136)
86 cd05806 CBM20_laforin Laforin 94.0 0.35 7.7E-06 36.7 7.4 47 168-215 13-74 (112)
87 cd05815 CBM20_DPE2_repeat1 Dis 93.4 1.1 2.4E-05 33.0 9.3 44 172-215 14-65 (101)
88 PF03423 CBM_25: Carbohydrate 93.4 0.44 9.5E-06 34.4 6.8 49 169-217 16-70 (87)
89 cd05807 CBM20_CGTase CGTase, C 93.1 0.44 9.4E-06 35.3 6.6 55 160-215 3-70 (101)
90 PRK01415 hypothetical protein; 92.6 0.38 8.2E-06 41.9 6.4 28 94-124 169-196 (247)
91 KOG4471 Phosphatidylinositol 3 92.3 0.3 6.4E-06 47.0 5.7 36 84-119 362-398 (717)
92 COG0607 PspE Rhodanese-related 92.3 0.54 1.2E-05 34.7 6.3 72 24-124 14-86 (110)
93 TIGR02104 pulA_typeI pullulana 91.7 0.78 1.7E-05 45.3 8.3 68 160-229 19-95 (605)
94 PLN02316 synthase/transferase 89.5 0.76 1.6E-05 47.8 6.1 49 170-218 169-222 (1036)
95 PF06602 Myotub-related: Myotu 88.9 1.2 2.6E-05 41.0 6.4 32 84-115 219-250 (353)
96 cd01520 RHOD_YbbB Member of th 88.7 2.8 6E-05 32.3 7.5 29 94-124 84-112 (128)
97 cd01448 TST_Repeat_1 Thiosulfa 88.0 1.6 3.6E-05 33.0 5.8 29 95-125 78-106 (122)
98 TIGR02100 glgX_debranch glycog 87.7 1.9 4.1E-05 43.2 7.5 68 159-229 13-98 (688)
99 KOG1089 Myotubularin-related p 87.6 1 2.2E-05 43.5 5.2 33 83-115 331-363 (573)
100 PLN02950 4-alpha-glucanotransf 86.4 5.4 0.00012 41.3 10.0 69 159-228 152-235 (909)
101 cd01533 4RHOD_Repeat_2 Member 86.3 1.8 4E-05 32.1 5.1 27 95-124 65-91 (109)
102 TIGR02103 pullul_strch alpha-1 86.1 3.2 7E-05 42.7 8.2 82 159-243 134-228 (898)
103 PLN02950 4-alpha-glucanotransf 86.0 5.2 0.00011 41.4 9.6 64 160-223 9-88 (909)
104 cd02857 CD_pullulan_degrading_ 85.5 5.3 0.00011 29.8 7.4 56 160-215 16-79 (116)
105 PLN02316 synthase/transferase 84.3 4.8 0.0001 42.1 8.5 56 160-215 491-557 (1036)
106 cd01522 RHOD_1 Member of the R 83.7 3.7 7.9E-05 31.1 5.8 19 94-113 62-80 (117)
107 PF00581 Rhodanese: Rhodanese- 83.4 4.3 9.4E-05 29.7 6.1 30 94-124 65-97 (113)
108 smart00450 RHOD Rhodanese Homo 83.4 3.4 7.3E-05 29.2 5.3 28 94-124 54-81 (100)
109 PLN02960 alpha-amylase 82.8 2.7 5.8E-05 42.9 5.8 47 160-207 128-182 (897)
110 TIGR02102 pullulan_Gpos pullul 82.3 4.7 0.0001 42.6 7.5 68 161-229 328-409 (1111)
111 PRK03705 glycogen debranching 80.5 6.2 0.00013 39.4 7.5 68 159-229 18-101 (658)
112 PRK05600 thiamine biosynthesis 79.3 3.5 7.6E-05 38.1 5.0 25 97-124 333-357 (370)
113 PF04343 DUF488: Protein of un 78.5 20 0.00043 27.3 8.3 48 22-70 6-53 (122)
114 cd01534 4RHOD_Repeat_3 Member 78.5 5.9 0.00013 28.5 5.1 27 95-124 55-81 (95)
115 cd01523 RHOD_Lact_B Member of 78.1 3.3 7.2E-05 30.1 3.7 27 95-124 60-86 (100)
116 KOG1530 Rhodanese-related sulf 76.7 5.2 0.00011 31.1 4.4 74 21-112 29-104 (136)
117 cd01519 RHOD_HSP67B2 Member of 75.8 6.1 0.00013 28.8 4.6 27 95-124 65-91 (106)
118 PRK00142 putative rhodanese-re 73.3 4.5 9.8E-05 36.5 3.9 27 95-124 170-196 (314)
119 cd01532 4RHOD_Repeat_1 Member 73.2 6.6 0.00014 28.1 4.2 29 95-124 49-77 (92)
120 PF02903 Alpha-amylase_N: Alph 72.7 14 0.0003 28.0 6.1 55 161-215 24-87 (120)
121 PRK05320 rhodanese superfamily 71.8 8.5 0.00018 33.7 5.2 27 95-124 174-200 (257)
122 PF03668 ATP_bind_2: P-loop AT 71.8 8 0.00017 34.3 5.0 19 98-116 244-262 (284)
123 TIGR03865 PQQ_CXXCW PQQ-depend 71.4 5.4 0.00012 32.2 3.6 29 94-124 114-142 (162)
124 PRK14510 putative bifunctional 70.7 16 0.00036 39.2 7.9 58 159-219 22-84 (1221)
125 cd01530 Cdc25 Cdc25 phosphatas 70.4 5.3 0.00011 30.5 3.2 24 94-119 66-90 (121)
126 PF01357 Pollen_allerg_1: Poll 70.3 32 0.0007 24.3 7.1 58 161-222 15-77 (82)
127 TIGR02981 phageshock_pspE phag 70.2 11 0.00025 27.7 4.9 27 95-124 57-83 (101)
128 PF14347 DUF4399: Domain of un 69.9 8.5 0.00018 27.8 4.0 33 195-228 50-82 (87)
129 COG1660 Predicted P-loop-conta 67.3 12 0.00026 32.8 5.0 32 85-116 229-263 (286)
130 PF03861 ANTAR: ANTAR domain; 66.9 11 0.00024 24.5 3.8 26 111-136 15-40 (56)
131 smart00400 ZnF_CHCC zinc finge 66.3 8.1 0.00017 25.0 3.0 32 100-133 23-54 (55)
132 COG1054 Predicted sulfurtransf 64.7 58 0.0013 29.1 8.8 42 80-124 155-197 (308)
133 PRK10287 thiosulfate:cyanide s 63.4 13 0.00029 27.6 4.1 18 95-113 59-76 (104)
134 cd01528 RHOD_2 Member of the R 63.2 12 0.00026 27.2 3.8 28 95-125 57-84 (101)
135 cd01443 Cdc25_Acr2p Cdc25 enzy 62.1 43 0.00093 24.8 6.8 18 95-112 65-82 (113)
136 PLN02877 alpha-amylase/limit d 60.8 33 0.00071 35.9 7.6 69 159-231 221-305 (970)
137 COG2945 Predicted hydrolase of 59.8 5 0.00011 33.6 1.3 71 60-140 28-102 (210)
138 PF02673 BacA: Bacitracin resi 58.7 11 0.00025 33.0 3.4 26 105-132 160-185 (259)
139 TIGR03503 conserved hypothetic 57.6 22 0.00047 32.9 5.1 42 175-218 152-195 (374)
140 cd01529 4RHOD_Repeats Member o 57.5 13 0.00029 26.6 3.2 28 94-124 54-81 (96)
141 COG3794 PetE Plastocyanin [Ene 57.2 37 0.00081 26.4 5.7 50 160-212 62-111 (128)
142 PRK05416 glmZ(sRNA)-inactivati 57.1 20 0.00044 31.9 4.8 19 98-116 247-265 (288)
143 TIGR00853 pts-lac PTS system, 57.0 11 0.00023 27.6 2.6 16 96-112 3-18 (95)
144 PRK00162 glpE thiosulfate sulf 56.4 38 0.00083 24.7 5.6 16 95-111 57-72 (108)
145 cd01525 RHOD_Kc Member of the 56.0 18 0.00039 26.2 3.7 26 96-124 65-90 (105)
146 cd01447 Polysulfide_ST Polysul 55.9 16 0.00035 26.2 3.4 28 94-124 59-86 (103)
147 KOG1263 Multicopper oxidases [ 55.5 10 0.00023 37.0 2.9 41 195-235 97-142 (563)
148 PRK12554 undecaprenyl pyrophos 55.3 13 0.00028 33.0 3.2 26 105-132 166-191 (276)
149 TIGR00753 undec_PP_bacA undeca 55.1 13 0.00028 32.5 3.2 26 105-132 160-185 (255)
150 PF01964 ThiC: ThiC family; I 54.3 1.7E+02 0.0037 27.4 10.3 101 26-135 86-213 (420)
151 PF13473 Cupredoxin_1: Cupredo 53.9 37 0.00079 24.9 5.1 47 160-211 43-90 (104)
152 cd01526 RHOD_ThiF Member of th 53.3 20 0.00043 27.1 3.7 28 94-124 70-97 (122)
153 KOG1004 Exosomal 3'-5' exoribo 53.3 31 0.00066 29.2 4.9 38 96-135 185-222 (230)
154 PF10302 DUF2407: DUF2407 ubiq 52.9 8.3 0.00018 28.4 1.4 10 97-106 86-95 (97)
155 PRK00281 undecaprenyl pyrophos 52.9 15 0.00033 32.4 3.3 26 105-132 164-189 (268)
156 PF08400 phage_tail_N: Prophag 51.7 22 0.00049 27.8 3.7 23 194-218 45-67 (134)
157 cd01527 RHOD_YgaP Member of th 51.6 18 0.0004 25.9 3.1 17 94-111 52-68 (99)
158 PF01807 zf-CHC2: CHC2 zinc fi 50.9 19 0.00041 26.4 3.1 37 100-138 54-90 (97)
159 TIGR03642 cas_csx13 CRISPR-ass 50.5 90 0.002 24.1 6.8 61 62-123 54-116 (124)
160 PRK10886 DnaA initiator-associ 49.6 49 0.0011 27.6 5.7 37 79-119 25-61 (196)
161 PF09419 PGP_phosphatase: Mito 49.0 99 0.0021 25.2 7.2 31 2-34 13-45 (168)
162 PRK09284 thiamine biosynthesis 48.8 86 0.0019 30.6 7.7 101 26-135 242-367 (607)
163 PLN02444 HMP-P synthase 48.1 74 0.0016 31.1 7.1 101 26-135 247-372 (642)
164 cd01444 GlpE_ST GlpE sulfurtra 47.3 30 0.00065 24.4 3.7 28 94-124 54-81 (96)
165 PRK11493 sseA 3-mercaptopyruva 46.8 13 0.00028 32.8 1.9 15 95-110 230-244 (281)
166 COG1099 Predicted metal-depend 45.5 14 0.0003 31.6 1.8 33 6-40 3-35 (254)
167 cd05567 PTS_IIB_mannitol PTS_I 44.9 25 0.00055 24.9 2.9 14 97-110 1-14 (87)
168 PF02126 PTE: Phosphotriestera 44.3 1.3E+02 0.0027 27.2 7.9 34 94-129 153-186 (308)
169 PF11896 DUF3416: Domain of un 42.1 84 0.0018 26.1 5.9 41 182-224 56-101 (187)
170 PRK11784 tRNA 2-selenouridine 40.4 66 0.0014 29.5 5.5 28 95-124 87-114 (345)
171 cd01449 TST_Repeat_2 Thiosulfa 39.6 55 0.0012 24.1 4.2 27 95-124 77-103 (118)
172 TIGR00190 thiC thiamine biosyn 39.5 93 0.002 29.1 6.2 103 26-135 87-214 (423)
173 COG0279 GmhA Phosphoheptose is 38.7 57 0.0012 26.6 4.2 32 77-112 23-54 (176)
174 PF08114 PMP1_2: ATPase proteo 38.5 13 0.00028 22.6 0.4 13 95-107 7-19 (43)
175 cd04445 DEP_PLEK1 DEP (Disheve 38.2 39 0.00085 24.9 2.9 34 96-134 24-58 (99)
176 COG0794 GutQ Predicted sugar p 38.1 92 0.002 26.3 5.5 35 81-122 28-62 (202)
177 PF02571 CbiJ: Precorrin-6x re 37.6 70 0.0015 27.8 5.0 83 10-101 47-135 (249)
178 PRK13938 phosphoheptose isomer 37.5 98 0.0021 25.8 5.7 40 76-119 26-65 (196)
179 COG1968 BacA Undecaprenyl pyro 37.4 38 0.00081 29.9 3.3 26 105-132 165-190 (270)
180 cd01521 RHOD_PspE2 Member of t 37.2 57 0.0012 24.0 3.9 29 94-124 62-91 (110)
181 KOG2379 Endonuclease MUS81 [Re 36.4 3E+02 0.0065 26.6 9.2 114 20-135 307-449 (501)
182 PRK13352 thiamine biosynthesis 36.4 1E+02 0.0022 29.0 5.9 101 26-135 87-217 (431)
183 PLN03244 alpha-amylase; Provis 36.2 1.2E+02 0.0026 31.1 6.9 48 160-207 131-185 (872)
184 COG2897 SseA Rhodanese-related 36.2 27 0.00059 31.1 2.2 14 94-107 232-245 (285)
185 PRK01269 tRNA s(4)U8 sulfurtra 35.6 66 0.0014 30.9 4.9 28 94-124 447-474 (482)
186 TIGR03769 P_ac_wall_RPT actino 35.1 51 0.0011 20.0 2.7 11 205-215 11-21 (41)
187 PRK07411 hypothetical protein; 34.7 48 0.001 30.9 3.8 28 95-125 341-368 (390)
188 PHA03338 US22 family homolog; 33.8 44 0.00096 29.6 3.1 40 100-139 160-200 (344)
189 PHA02540 61 DNA primase; Provi 33.7 66 0.0014 29.4 4.3 38 98-138 53-91 (337)
190 PRK09590 celB cellobiose phosp 33.3 41 0.00089 25.0 2.5 11 98-108 3-13 (104)
191 KOG0470 1,4-alpha-glucan branc 32.9 45 0.00097 33.5 3.3 42 162-203 115-157 (757)
192 KOG2451 Aldehyde dehydrogenase 32.6 30 0.00066 32.1 2.0 63 210-274 23-90 (503)
193 TIGR02375 pseudoazurin pseudoa 31.9 1.5E+02 0.0032 22.5 5.4 48 160-212 23-71 (116)
194 PRK10785 maltodextrin glucosid 31.2 2E+02 0.0043 28.5 7.6 48 171-218 33-87 (598)
195 COG3707 AmiR Response regulato 31.2 50 0.0011 27.6 2.9 25 113-137 149-173 (194)
196 PF02302 PTS_IIB: PTS system, 31.1 35 0.00076 24.0 1.8 13 98-110 1-13 (90)
197 KOG0235 Phosphoglycerate mutas 31.0 2.2E+02 0.0048 24.2 6.8 50 77-132 134-186 (214)
198 PF07495 Y_Y_Y: Y_Y_Y domain; 30.7 78 0.0017 20.6 3.4 26 198-223 30-58 (66)
199 PF12554 MOZART1: Mitotic-spin 30.4 1.5E+02 0.0032 18.8 4.3 31 106-137 18-48 (48)
200 cd01531 Acr2p Eukaryotic arsen 30.3 64 0.0014 23.8 3.2 19 95-113 61-79 (113)
201 COG2927 HolC DNA polymerase II 30.0 58 0.0012 25.9 2.9 22 83-105 17-38 (144)
202 PRK05728 DNA polymerase III su 29.9 74 0.0016 25.0 3.6 25 81-106 15-39 (142)
203 TIGR03167 tRNA_sel_U_synt tRNA 29.6 1.2E+02 0.0026 27.4 5.3 27 96-124 74-100 (311)
204 COG2179 Predicted hydrolase of 29.4 1.8E+02 0.0039 23.9 5.6 73 5-111 5-77 (175)
205 PRK06036 translation initiatio 29.2 1.1E+02 0.0024 28.0 5.0 17 95-111 147-163 (339)
206 PRK05772 translation initiatio 29.1 1.1E+02 0.0024 28.2 5.1 30 247-276 332-361 (363)
207 COG0422 ThiC Thiamine biosynth 29.1 2.9E+02 0.0062 25.8 7.5 101 26-135 88-215 (432)
208 KOG1611 Predicted short chain- 28.6 2E+02 0.0043 24.9 6.1 72 23-105 22-93 (249)
209 TIGR03217 4OH_2_O_val_ald 4-hy 28.2 4E+02 0.0086 24.2 8.5 83 22-112 120-204 (333)
210 KOG0948 Nuclear exosomal RNA h 27.9 2.7E+02 0.0058 28.6 7.6 107 94-216 142-274 (1041)
211 KOG0023 Alcohol dehydrogenase, 27.7 55 0.0012 29.8 2.7 61 156-216 279-353 (360)
212 PF13620 CarboxypepD_reg: Carb 27.7 1.5E+02 0.0032 20.1 4.6 44 172-219 17-60 (82)
213 cd04864 LigD_Pol_like_1 LigD_P 27.6 1.8E+02 0.004 25.0 5.8 26 93-119 186-211 (228)
214 cd07944 DRE_TIM_HOA_like 4-hyd 27.6 3.6E+02 0.0079 23.5 7.9 82 23-112 116-199 (266)
215 KOG4088 Translocon-associated 27.5 2.9E+02 0.0063 21.9 6.3 53 160-214 43-101 (167)
216 TIGR02657 amicyanin amicyanin. 27.5 1.7E+02 0.0036 20.4 4.8 50 160-212 19-69 (83)
217 PF09912 DUF2141: Uncharacteri 27.4 1.8E+02 0.004 21.7 5.3 43 195-240 40-88 (112)
218 PF01186 Lysyl_oxidase: Lysyl 27.3 1.1E+02 0.0023 25.9 4.2 39 195-242 148-186 (205)
219 PLN02723 3-mercaptopyruvate su 27.2 57 0.0012 29.4 2.8 15 95-110 268-282 (320)
220 PF03370 CBM_21: Putative phos 26.9 2.2E+02 0.0048 21.2 5.7 48 171-218 33-99 (113)
221 TIGR03102 halo_cynanin halocya 26.8 2.8E+02 0.0061 21.0 6.1 49 160-212 50-99 (115)
222 cd01524 RHOD_Pyr_redox Member 26.3 80 0.0017 22.1 3.0 17 94-111 49-65 (90)
223 PRK09629 bifunctional thiosulf 26.1 91 0.002 31.0 4.2 21 198-218 455-476 (610)
224 PF04364 DNA_pol3_chi: DNA pol 25.7 83 0.0018 24.5 3.2 23 82-105 16-38 (137)
225 cd05565 PTS_IIB_lactose PTS_II 25.6 63 0.0014 23.8 2.3 19 98-118 2-20 (99)
226 PRK06646 DNA polymerase III su 25.5 97 0.0021 24.8 3.6 25 81-106 15-39 (154)
227 TIGR03000 plancto_dom_1 Planct 25.3 2.4E+02 0.0053 19.7 6.0 46 168-223 9-60 (75)
228 PRK10499 PTS system N,N'-diace 25.1 1.5E+02 0.0033 22.0 4.4 14 97-110 4-17 (106)
229 PF09623 Cas_NE0113: CRISPR-as 25.1 2.5E+02 0.0055 24.0 6.2 56 67-123 82-138 (224)
230 PF13829 DUF4191: Domain of un 25.0 1.2E+02 0.0026 26.0 4.1 43 238-280 157-200 (224)
231 COG3414 SgaB Phosphotransferas 24.9 1.1E+02 0.0025 22.2 3.6 16 97-112 2-17 (93)
232 TIGR00762 DegV EDD domain prot 24.8 3.3E+02 0.0072 23.7 7.3 19 121-139 133-151 (275)
233 TIGR00512 salvage_mtnA S-methy 24.5 1.7E+02 0.0036 26.7 5.3 9 98-106 149-157 (331)
234 KOG1158 NADP/FAD dependent oxi 24.5 3E+02 0.0066 27.6 7.4 60 80-139 576-637 (645)
235 KOG4836 Uncharacterized conser 24.3 3.4E+02 0.0073 23.0 6.5 40 100-139 82-126 (215)
236 PRK07414 cob(I)yrinic acid a,c 24.1 1.2E+02 0.0026 25.0 3.9 29 95-124 20-48 (178)
237 PLN02960 alpha-amylase 24.0 1.7E+02 0.0038 30.4 5.8 54 188-243 318-376 (897)
238 COG3828 Uncharacterized protei 23.7 62 0.0013 27.1 2.1 18 209-226 98-115 (239)
239 KOG0045 Cytosolic Ca2+-depende 23.7 78 0.0017 31.5 3.2 25 205-229 115-142 (612)
240 PF00127 Copper-bind: Copper b 23.6 2.8E+02 0.006 19.9 5.6 59 160-223 25-86 (99)
241 PRK08195 4-hyroxy-2-oxovalerat 23.4 5.2E+02 0.011 23.5 8.4 82 23-112 122-205 (337)
242 COG0276 HemH Protoheme ferro-l 23.4 1.2E+02 0.0027 27.5 4.2 55 18-72 245-302 (320)
243 cd04866 LigD_Pol_like_3 LigD_P 23.3 2.3E+02 0.005 24.3 5.6 26 93-119 181-206 (223)
244 PF01491 Frataxin_Cyay: Fratax 22.6 78 0.0017 23.7 2.4 19 205-224 67-86 (109)
245 cd04863 MtLigD_Pol_like MtLigD 22.6 2.5E+02 0.0054 24.2 5.7 25 94-119 190-214 (231)
246 PRK08762 molybdopterin biosynt 22.5 1.7E+02 0.0037 27.0 5.1 28 94-124 55-82 (376)
247 PF11256 DUF3055: Protein of u 22.4 61 0.0013 23.0 1.6 35 97-132 34-74 (81)
248 PF05738 Cna_B: Cna protein B- 22.3 2.3E+02 0.005 18.5 4.6 34 194-228 25-60 (70)
249 TIGR00640 acid_CoA_mut_C methy 22.3 1E+02 0.0022 24.0 3.0 27 10-37 87-113 (132)
250 PRK00446 cyaY frataxin-like pr 21.9 56 0.0012 24.4 1.5 24 197-224 59-82 (105)
251 TIGR03422 mito_frataxin fratax 21.9 62 0.0013 23.8 1.7 18 206-224 66-83 (97)
252 cd00503 Frataxin Frataxin is a 21.8 54 0.0012 24.5 1.4 19 205-224 65-83 (105)
253 TIGR02094 more_P_ylases alpha- 21.8 2.7E+02 0.0059 27.6 6.6 37 96-135 160-199 (601)
254 cd00182 TBOX T-box DNA binding 21.7 2.7E+02 0.0058 23.2 5.6 62 196-265 46-109 (188)
255 smart00425 TBOX Domain first f 21.4 2.1E+02 0.0046 23.8 5.0 62 196-265 45-108 (190)
256 PF13580 SIS_2: SIS domain; PD 21.4 2.7E+02 0.0059 21.4 5.4 33 79-115 19-51 (138)
257 PTZ00286 6-phospho-1-fructokin 21.3 6.4E+02 0.014 24.2 8.7 123 8-136 152-299 (459)
258 cd04861 LigD_Pol_like LigD_Pol 21.3 2.8E+02 0.0061 23.8 5.8 26 93-119 185-210 (227)
259 PF10634 Iron_transport: Fe2+ 21.3 2.9E+02 0.0062 22.1 5.4 48 161-216 69-117 (151)
260 PF10727 Rossmann-like: Rossma 21.1 63 0.0014 25.0 1.6 30 81-110 81-110 (127)
261 PF06838 Met_gamma_lyase: Meth 20.6 2.7E+02 0.0058 26.0 5.7 64 61-140 128-191 (403)
262 PRK11493 sseA 3-mercaptopyruva 20.5 1.9E+02 0.0041 25.4 4.8 30 94-125 85-114 (281)
263 COG2089 SpsE Sialic acid synth 20.4 6.1E+02 0.013 23.2 7.8 29 80-110 161-189 (347)
264 COG1440 CelA Phosphotransferas 20.2 94 0.002 23.1 2.3 14 97-110 2-15 (102)
265 PRK10310 PTS system galactitol 20.1 88 0.0019 22.6 2.2 13 98-110 4-16 (94)
266 cd04862 PaeLigD_Pol_like PaeLi 20.1 3E+02 0.0065 23.7 5.7 26 93-119 185-210 (227)
267 cd04865 LigD_Pol_like_2 LigD_P 20.1 3E+02 0.0065 23.7 5.7 25 93-118 186-210 (228)
No 1
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=100.00 E-value=3.6e-32 Score=213.90 Aligned_cols=163 Identities=25% Similarity=0.363 Sum_probs=141.3
Q ss_pred cccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhHH
Q 040474 3 YNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLP 82 (283)
Q Consensus 3 ~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~~ 82 (283)
+++|+|+||+++. ..+.+...|+++||++|||.+.+..... .++++|..+|+.|.+...+..+|+
T Consensus 17 ~SqIt~sLfl~~G-vaA~~k~~l~~~~It~IiNat~E~pn~~--------------l~~~qy~kv~~~D~p~~~l~~hfD 81 (198)
T KOG1718|consen 17 MSQITPSLFLSNG-VAANDKLLLKKRKITCIINATTEVPNTS--------------LPDIQYMKVPLEDTPQARLYDHFD 81 (198)
T ss_pred hhhcCcceeEecc-ccccCHHHHHhcCceEEEEcccCCCCcc--------------CCCceeEEEEcccCCcchhhhhhh
Confidence 6899999999965 4788999999999999999998764311 257999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC-CChhHHHHhHHhhhhccccce
Q 040474 83 AVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKSATADILTGLRKEL 161 (283)
Q Consensus 83 ~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~-pn~~~~~~~~~~~~~~~~~~~ 161 (283)
.+.+.|+... .+||++||||.||+|||+++|+||||++.+|++.||+.++|++||.+ ||-||++| +
T Consensus 82 ~vAD~I~~v~-~~gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~GFw~Q------------L 148 (198)
T KOG1718|consen 82 PVADKIHSVI-MRGGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNVGFWRQ------------L 148 (198)
T ss_pred HHHHHHHHHH-hcCCcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCccHHHH------------H
Confidence 9999998875 67899999999999999999999999999999999999999999998 88877775 4
Q ss_pred EEEEeeCCCcceEEEeeccCCCCccccceeecC
Q 040474 162 VTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKE 194 (283)
Q Consensus 162 v~f~w~~~g~~~v~l~Gsf~~W~~~~pl~~~~~ 194 (283)
+.++.+..|..+|.++.+-.+= +.+|..+.++
T Consensus 149 i~YE~qL~g~~sV~MV~~p~~d-~~iPDvye~e 180 (198)
T KOG1718|consen 149 IDYEQQLFGNASVRMVQTPVGD-QLIPDVYEKE 180 (198)
T ss_pred HHHHHHhcCCCeEEEEeccccC-ccCchhhccc
Confidence 4455556888899999987663 5788888754
No 2
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.97 E-value=1.1e-29 Score=202.12 Aligned_cols=130 Identities=21% Similarity=0.394 Sum_probs=116.9
Q ss_pred cccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhHH
Q 040474 3 YNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLP 82 (283)
Q Consensus 3 ~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~~ 82 (283)
.++|.|+||+|++| ++.+.+.|+++||++||||+.+.+.. ...++.|+++|+.|....++...+.
T Consensus 1 ~~~I~~~l~~G~~~-~~~~~~~l~~~gi~~Vi~l~~~~~~~--------------~~~~~~~~~ipi~D~~~~~~~~~~~ 65 (138)
T smart00195 1 PSEILPHLYLGSYS-SALNLALLKKLGITHVINVTNEVPNL--------------NKKGFTYLGVPILDNTETKISPYFP 65 (138)
T ss_pred CcEEeCCeEECChh-HcCCHHHHHHcCCCEEEEccCCCCCC--------------CCCCCEEEEEECCCCCCCChHHHHH
Confidence 37899999999997 88899999999999999999876421 1257999999999977777778899
Q ss_pred HHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC-CChhHHHH
Q 040474 83 AVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKS 148 (283)
Q Consensus 83 ~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~-pn~~~~~~ 148 (283)
.++++|+..+ +.+++|||||.+|+|||+++++||||+..|+++++|+++|+++||.+ ||.+++.+
T Consensus 66 ~~~~~i~~~~-~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R~~~~p~~~~~~q 131 (138)
T smart00195 66 EAVEFIEDAE-KKGGKVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRRPIISPNFGFLRQ 131 (138)
T ss_pred HHHHHHHHHh-cCCCeEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCccCCCHhHHHH
Confidence 9999999986 66889999999999999999999999999999999999999999987 99999887
No 3
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.95 E-value=1.7e-27 Score=189.38 Aligned_cols=132 Identities=25% Similarity=0.455 Sum_probs=117.2
Q ss_pred cccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhHH
Q 040474 3 YNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLP 82 (283)
Q Consensus 3 ~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~~ 82 (283)
+++|.|+||+|++| ++.+.+.|+++||++||||+.+.+... ....++.|+++|+.|.+..++...+.
T Consensus 2 ~~~i~~~l~~g~~~-~~~d~~~L~~~gi~~VI~l~~~~~~~~------------~~~~~~~~~~~~~~D~~~~~~~~~~~ 68 (139)
T cd00127 2 LSEITPGLYLGSYP-AASDKELLKKLGITHVLNVAKEVPNEN------------LFLSDFNYLYVPILDLPSQDISKYFD 68 (139)
T ss_pred cCEEcCCeEECChh-HhcCHHHHHHcCCCEEEEcccCCCCcc------------cCCCCceEEEEEceeCCCCChHHHHH
Confidence 68999999999997 888999999999999999998775311 11358999999999988777777899
Q ss_pred HHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC-CChhHHHH
Q 040474 83 AVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKS 148 (283)
Q Consensus 83 ~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~-pn~~~~~~ 148 (283)
.++++|.... +++++|||||.+|+|||++++++|||...++++++|+++|++.||.+ ||.+++.+
T Consensus 69 ~~~~~i~~~~-~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~~ 134 (139)
T cd00127 69 EAVDFIDDAR-EKGGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFMRQ 134 (139)
T ss_pred HHHHHHHHHH-hcCCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHH
Confidence 9999999887 55789999999999999999999999999999999999999999987 99888876
No 4
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.95 E-value=1.2e-27 Score=201.00 Aligned_cols=131 Identities=23% Similarity=0.402 Sum_probs=118.1
Q ss_pred ccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhHHH
Q 040474 4 NFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLPA 83 (283)
Q Consensus 4 ~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~~~ 83 (283)
.+|+|+||+|+. .++.+.+.|++.||++|||+++.....+ .....+.|..||+.|.-..++.+.|++
T Consensus 173 V~ilp~LYLg~a-~ds~NldvLkk~gI~yviNVTpnlpn~f------------e~~g~f~YkqipisDh~Sqnls~ffpE 239 (343)
T KOG1717|consen 173 VEILPNLYLGCA-KDSTNLDVLKKYGIKYVINVTPNLPNNF------------ENNGEFIYKQIPISDHASQNLSQFFPE 239 (343)
T ss_pred hhhccchhcccc-cccccHHHHHhcCceEEEecCCCCcchh------------hcCCceeEEeeeccchhhhhhhhhhHH
Confidence 379999999999 6999999999999999999997664321 123579999999999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC-CChhHHHH
Q 040474 84 VISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKS 148 (283)
Q Consensus 84 ~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~-pn~~~~~~ 148 (283)
++.||+++..+ +.-|||||.+|+|||+|+++||||.+..+++++|+++|+.++..+ ||..|+-|
T Consensus 240 AIsfIdeArsk-~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAyd~Vk~kksnisPNFnFMgQ 304 (343)
T KOG1717|consen 240 AISFIDEARSK-NCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAYDFVKHKKSNISPNFNFMGQ 304 (343)
T ss_pred HHHHHHHhhcc-CCcEEEeeeccccchhHHHHHHHHHHhccchhhHHHHHHHhccCCCCCcchhHH
Confidence 99999999754 455999999999999999999999999999999999999999998 99999987
No 5
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.95 E-value=3.7e-27 Score=209.02 Aligned_cols=135 Identities=27% Similarity=0.451 Sum_probs=122.7
Q ss_pred CccccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhh
Q 040474 1 MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMR 80 (283)
Q Consensus 1 m~~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~ 80 (283)
++++.|.|+||+|+.. .+.+...|+++||++|+|+....+...+- ..+++.|+++|+.|.+..++..+
T Consensus 73 ~~~~~i~p~l~lg~~~-~~~~~~~l~~~~it~vln~~~~~~~~~~~-----------~~~~~~y~~i~~~D~~~~~i~~~ 140 (285)
T KOG1716|consen 73 NPIVEILPNLYLGSQG-VASDPDLLKKLGITHVLNVSSSCPNPRFL-----------KEQGIKYLRIPVEDNPSTDILQH 140 (285)
T ss_pred CCceeecCCceecCcc-cccchhhHHHcCCCEEEEecccCCccccc-----------cccCceEEeccccCCccccHHHH
Confidence 3678999999999995 99999999999999999999887543210 11379999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC-CChhHHHH
Q 040474 81 LPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKS 148 (283)
Q Consensus 81 ~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~-pn~~~~~~ 148 (283)
|+++++||+.+. .++++|||||.+|+|||+++++||||+.++|++++|+++|+++|+.+ ||.+|+.|
T Consensus 141 ~~~~~~fI~~a~-~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i~PN~gf~~Q 208 (285)
T KOG1716|consen 141 FPEAISFIEKAR-EKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPIISPNFGFLRQ 208 (285)
T ss_pred HHHHHHHHHHHH-hCCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCccCCCHHHHHH
Confidence 999999999997 67899999999999999999999999999999999999999999998 99999998
No 6
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.95 E-value=3.5e-27 Score=186.29 Aligned_cols=125 Identities=30% Similarity=0.445 Sum_probs=110.4
Q ss_pred eEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhHHHHHHHHH
Q 040474 10 LIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLPAVISKLY 89 (283)
Q Consensus 10 l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~~~~~~~i~ 89 (283)
||+|+.+ ++. .+.|+++||++|||++.+.+.. ......++.|+++|+.|....++...+..++++|+
T Consensus 1 lylG~~~-~a~-~~~l~~~~I~~Vin~~~~~~~~-----------~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~ 67 (133)
T PF00782_consen 1 LYLGSYP-AAS-IAFLKNLGITHVINLQEECPNP-----------YFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIE 67 (133)
T ss_dssp EEEEEHH-HHC-HHHHHHTTEEEEEECSSSSSTS-----------HHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHH
T ss_pred CEEeCHH-HHh-HHHHHHCCCCEEEEccCCCcCc-----------hhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhh
Confidence 7999996 777 9999999999999999876542 11123689999999999777888889999999999
Q ss_pred HHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC-CChhHHHH
Q 040474 90 KAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKS 148 (283)
Q Consensus 90 ~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~-pn~~~~~~ 148 (283)
++. +.+++|||||.+|+|||+++++||||...+|++++|+++|+++||.+ ||.+++.+
T Consensus 68 ~~~-~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp~~~~~~~~~~~ 126 (133)
T PF00782_consen 68 NAI-SEGGKVLVHCKAGLSRSGAVAAAYLMKKNGMSLEEAIEYVRSRRPQINPNPSFIRQ 126 (133)
T ss_dssp HHH-HTTSEEEEEESSSSSHHHHHHHHHHHHHHTSSHHHHHHHHHHHSTTSTHHHHHHHH
T ss_pred hhh-cccceeEEEeCCCcccchHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHH
Confidence 996 56789999999999999999999999999999999999999999997 88877776
No 7
>PRK12361 hypothetical protein; Provisional
Probab=99.91 E-value=5.5e-24 Score=204.96 Aligned_cols=133 Identities=23% Similarity=0.316 Sum_probs=112.9
Q ss_pred cccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhHH
Q 040474 3 YNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLP 82 (283)
Q Consensus 3 ~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~~ 82 (283)
+++|.|+||+|+.+ .+.+.+.|++.||++||||+.+.+..... ....++.|+++|+.|...+.. .++.
T Consensus 95 ~~~I~~~l~lG~~~-~a~d~~~L~~~gI~~Vldlt~E~~~~~~~----------~~~~~i~yl~iPi~D~~~p~~-~~l~ 162 (547)
T PRK12361 95 IQKIDENLYLGCRL-FPADLEKLKSNKITAILDVTAEFDGLDWS----------LTEEDIDYLNIPILDHSVPTL-AQLN 162 (547)
T ss_pred ceEEcCcEEECCCC-CcccHHHHHHcCCCEEEEccccccccccc----------ccccCceEEEeecCCCCCCcH-HHHH
Confidence 57899999999996 99999999999999999999765321100 012479999999999877754 5799
Q ss_pred HHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHH-hCCCHHHHHHHHHhhCCCC-CChhHHHH
Q 040474 83 AVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWV-LGYKLNEAHQLLLSKRPCF-PKLDAIKS 148 (283)
Q Consensus 83 ~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~-~~~~~~~A~~~v~~~r~~~-pn~~~~~~ 148 (283)
++++||++.+ +.+++|||||.+|+|||+++++||||.+ .++++++|+++|+++||.+ ||.+.++.
T Consensus 163 ~a~~~i~~~~-~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~ 229 (547)
T PRK12361 163 QAINWIHRQV-RANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRA 229 (547)
T ss_pred HHHHHHHHHH-HCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHHHHH
Confidence 9999999997 5678999999999999999999999966 5899999999999999997 98866554
No 8
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=99.91 E-value=2.7e-24 Score=154.20 Aligned_cols=78 Identities=33% Similarity=0.687 Sum_probs=71.8
Q ss_pred ceEEEEeeCCCcceEEEeeccCCCCccccceeecCCCeEEEEEecCCceEEEEEEECCEeeecCCcceeecCCCCCcceE
Q 040474 160 ELVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNKYELVSSPNKDGHVNNY 239 (283)
Q Consensus 160 ~~v~f~w~~~g~~~v~l~Gsf~~W~~~~pl~~~~~~~~~~~~~~l~~g~y~ykf~vdg~w~~d~~~~~~~~~~~G~~nn~ 239 (283)
.+|+|+|.. ++++|+|+|||++|+..+||.+.+ ++ |++++.||||.|+|||+|||+|.+||++|++ .|++|+.||+
T Consensus 2 ~~v~f~~~~-~a~~V~v~G~F~~W~~~~pm~~~~-~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~-~d~~G~~NN~ 77 (79)
T cd02859 2 VPTTFVWPG-GGKEVYVTGSFDNWKKKIPLEKSG-KG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTE-TDDEGNVNNV 77 (79)
T ss_pred eEEEEEEcC-CCcEEEEEEEcCCCCccccceECC-CC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCcc-CCCCCcEeee
Confidence 589999999 559999999999999889999974 34 9999999999999999999999999999988 6999999999
Q ss_pred EE
Q 040474 240 VQ 241 (283)
Q Consensus 240 i~ 241 (283)
|.
T Consensus 78 i~ 79 (79)
T cd02859 78 ID 79 (79)
T ss_pred EC
Confidence 84
No 9
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.91 E-value=4.6e-24 Score=165.88 Aligned_cols=145 Identities=21% Similarity=0.264 Sum_probs=122.8
Q ss_pred cccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhHHHH
Q 040474 5 FIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLPAV 84 (283)
Q Consensus 5 ~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~~~~ 84 (283)
.|...+.+|..|-...+.+.+++.|+..|+++.++.|.... ...+.. .|++++.+|..|....+....+.++
T Consensus 27 ~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~~a~---s~~wk~-----~giE~L~i~T~D~~~~Ps~~~i~~a 98 (183)
T KOG1719|consen 27 RIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYELLAP---SNLWKN-----YGIEFLVIPTRDYTGAPSLENIQKA 98 (183)
T ss_pred eecceEEEeecccccccchHHHhcCCCeEEEeCCchhhhhh---hHHHHh-----ccceeEEeccccccCCCCHHHHHHH
Confidence 46677888988766788899999999999999988765332 223333 4899999999997766656678889
Q ss_pred HHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCCChhHHHHhHHhhhhccccceE
Q 040474 85 ISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILTGLRKELV 162 (283)
Q Consensus 85 ~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~pn~~~~~~~~~~~~~~~~~~~v 162 (283)
++||++-. ..|+.|+|||+||.+||+|+++||||.+.+|++++|+++++++||.+ .++.+|++.+.+|.++.+
T Consensus 99 VeFi~k~a-sLGktvYVHCKAGRtRSaTvV~cYLmq~~~wtpe~A~~~vr~iRp~V----lL~~~Qw~~l~ef~~~~~ 171 (183)
T KOG1719|consen 99 VEFIHKNA-SLGKTVYVHCKAGRTRSATVVACYLMQHKNWTPEAAVEHVRKIRPRV----LLRPAQWDVLKEFYKQIV 171 (183)
T ss_pred HHHHHhcc-ccCCeEEEEecCCCccchhhhhhhhhhhcCCCHHHHHHHHHhcCcce----eecHHHHHHHHHHHHHHH
Confidence 99999885 67889999999999999999999999999999999999999999997 678899999988877664
No 10
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.89 E-value=2.7e-22 Score=163.93 Aligned_cols=141 Identities=16% Similarity=0.157 Sum_probs=109.7
Q ss_pred ccccccCCeEEcCCCCCc---ccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHh
Q 040474 2 TYNFIRPDLIVGSCLQTP---EDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLR 78 (283)
Q Consensus 2 ~~~~I~~~l~lG~~p~~~---~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~ 78 (283)
.++++...+++...|..+ .+++.|++.||++||+++.+.. +.+.+. ..|+.|+++|++|...+...
T Consensus 10 ~~~~~~~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~~------~~~~~~-----~~gi~~~~~p~~D~~~P~~~ 78 (166)
T PTZ00242 10 QIEYVLFKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPTY------DAELLE-----KNGIEVHDWPFDDGAPPPKA 78 (166)
T ss_pred ceeeeceEEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCCC------CHHHHH-----HCCCEEEecCCCCCCCCCHH
Confidence 367889999998887432 4568899999999999976431 222222 25899999999998766533
Q ss_pred hhHHHHHHHHHHHHH---cCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCCChhHHHHhHHhhhh
Q 040474 79 MRLPAVISKLYKAIN---RNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILT 155 (283)
Q Consensus 79 ~~~~~~~~~i~~~l~---~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~pn~~~~~~~~~~~~~ 155 (283)
.+...+++++..+. ..|++|+|||.+|+||||+++++|||...++++.+|+++|+++||.. +...|+.++.
T Consensus 79 -~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~-----i~~~Q~~~l~ 152 (166)
T PTZ00242 79 -VIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGA-----INQTQLQFLK 152 (166)
T ss_pred -HHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCC-----chHHHHHHHH
Confidence 45667777777653 24889999999999999999999999988999999999999999975 3456777777
Q ss_pred cccc
Q 040474 156 GLRK 159 (283)
Q Consensus 156 ~~~~ 159 (283)
.|.+
T Consensus 153 ~~~~ 156 (166)
T PTZ00242 153 KYKP 156 (166)
T ss_pred HHHH
Confidence 6654
No 11
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.85 E-value=7.9e-21 Score=160.67 Aligned_cols=133 Identities=19% Similarity=0.244 Sum_probs=103.1
Q ss_pred eEEcCCCCC---cccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhHHHHHH
Q 040474 10 LIVGSCLQT---PEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLPAVIS 86 (283)
Q Consensus 10 l~lG~~p~~---~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~~~~~~ 86 (283)
+.+-..|.. ...++.|++.||++||++++... +...+.. .||.++++|++|...|+.. .+.+.++
T Consensus 94 fLi~~~P~~~~~~~yl~eLk~~gV~~lVrlcE~~Y------d~~~~~~-----~GI~~~~lpipDg~aPs~~-~i~~~l~ 161 (241)
T PTZ00393 94 ILILDAPTNDLLPLYIKEMKNYNVTDLVRTCERTY------NDGEITS-----AGINVHELIFPDGDAPTVD-IVSNWLT 161 (241)
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCCCC------CHHHHHH-----cCCeEEEeecCCCCCCCHH-HHHHHHH
Confidence 444455522 24558899999999999976431 2222222 5999999999998887643 5677788
Q ss_pred HHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCCChhHHHHhHHhhhhccccce
Q 040474 87 KLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILTGLRKEL 161 (283)
Q Consensus 87 ~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~pn~~~~~~~~~~~~~~~~~~~ 161 (283)
+++..+ +.|++|+|||++|+||||+++++|||. .|+++++|+++||++||.+.+ ..|..++..|.++.
T Consensus 162 ~i~~~l-~~g~~VaVHC~AGlGRTGtl~AayLI~-~GmspeeAI~~VR~~RPgAIn-----~~Q~~fL~~y~~~~ 229 (241)
T PTZ00393 162 IVNNVI-KNNRAVAVHCVAGLGRAPVLASIVLIE-FGMDPIDAIVFIRDRRKGAIN-----KRQLQFLKAYKKKK 229 (241)
T ss_pred HHHHHH-hcCCeEEEECCCCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhc
Confidence 888776 567899999999999999999999995 899999999999999998643 45777888777653
No 12
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.82 E-value=6.6e-20 Score=132.63 Aligned_cols=80 Identities=33% Similarity=0.657 Sum_probs=73.6
Q ss_pred ceEEEEeeCCCcceEEEeeccCCCCccccceeecCCCeEEEEEecCCceEEEEEEECCEee-ecCCcceeecCCCCCcce
Q 040474 160 ELVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWT-CNKYELVSSPNKDGHVNN 238 (283)
Q Consensus 160 ~~v~f~w~~~g~~~v~l~Gsf~~W~~~~pl~~~~~~~~~~~~~~l~~g~y~ykf~vdg~w~-~d~~~~~~~~~~~G~~nn 238 (283)
.+++|+|..+.+++|+|+|+|++|+ ..+|.+. ++|.|++++.|+||.|+|||+|||.|. .||.++....|++|+.|+
T Consensus 2 ~~vtf~~~ap~a~~V~v~G~fn~W~-~~~m~~~-~~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~~~~~~~g~~n~ 79 (82)
T cd02861 2 VPVVFAYRGPEADSVYLAGSFNNWN-AIPMERE-GDGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAAYVDDGFGGKNA 79 (82)
T ss_pred ccEEEEEECCCCCEEEEEeECCCCC-cccCEEC-CCCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCceecCCCCccce
Confidence 4789999999999999999999998 6899986 468999999999999999999999998 999999877899999999
Q ss_pred EEE
Q 040474 239 YVQ 241 (283)
Q Consensus 239 ~i~ 241 (283)
+|+
T Consensus 80 v~~ 82 (82)
T cd02861 80 VFV 82 (82)
T ss_pred EcC
Confidence 974
No 13
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.82 E-value=2.4e-19 Score=146.74 Aligned_cols=137 Identities=23% Similarity=0.312 Sum_probs=102.0
Q ss_pred ccccccCCeEEcCCCCC--cc-------------cHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEE
Q 040474 2 TYNFIRPDLIVGSCLQT--PE-------------DVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIR 66 (283)
Q Consensus 2 ~~~~I~~~l~lG~~p~~--~~-------------~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ 66 (283)
+|+||+|+.+++=..+. +. -+..++.++++.++.|.... .+...+ ...||.+++
T Consensus 52 dfnwI~p~~~i~f~~p~~~s~gi~~~f~~~~~~~~~~~~~~~~v~s~vrln~~~------yd~~~f-----~~~Gi~h~~ 120 (225)
T KOG1720|consen 52 DFNWIIPDRFIAFAGPHLKSRGIESGFPLHLPQPYIQYFKNNNVTSIVRLNKRL------YDAKRF-----TDAGIDHHD 120 (225)
T ss_pred CcceeccchhhhhcCccccccchhhcccccCChhHHHHhhhcccceEEEcCCCC------CChHHh-----cccCceeee
Confidence 78999999655433111 11 13456788899999887654 122221 125899999
Q ss_pred EeccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC---CCh
Q 040474 67 AEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF---PKL 143 (283)
Q Consensus 67 ipi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~---pn~ 143 (283)
+|++|...|++. .+.+.++.++.++ + +++|.|||++|.||||++++||||+.+||++.+|+.+||.+||.. |..
T Consensus 121 l~f~Dg~tP~~~-~v~~fv~i~e~~~-~-~g~iaVHCkaGlGRTG~liAc~lmy~~g~ta~eaI~~lR~~RpG~V~gpqQ 197 (225)
T KOG1720|consen 121 LFFADGSTPTDA-IVKEFVKIVENAE-K-GGKIAVHCKAGLGRTGTLIACYLMYEYGMTAGEAIAWLRICRPGAVIGPQQ 197 (225)
T ss_pred eecCCCCCCCHH-HHHHHHHHHHHHH-h-cCeEEEEeccCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCccccCHHH
Confidence 999999888755 5566777777786 3 899999999999999999999999999999999999999999974 544
Q ss_pred hHHHHhHHh
Q 040474 144 DAIKSATAD 152 (283)
Q Consensus 144 ~~~~~~~~~ 152 (283)
..+.-.|.+
T Consensus 198 ~~l~~~q~~ 206 (225)
T KOG1720|consen 198 HKLLHKQRD 206 (225)
T ss_pred HHHHHHHHH
Confidence 444444444
No 14
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.76 E-value=2.8e-18 Score=137.21 Aligned_cols=118 Identities=25% Similarity=0.302 Sum_probs=77.9
Q ss_pred CCeEEcCCCCC---------cccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHh
Q 040474 8 PDLIVGSCLQT---------PEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLR 78 (283)
Q Consensus 8 ~~l~lG~~p~~---------~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~ 78 (283)
..|.++.+|.. ..|++.|+..|++.||++.+..|...++++ .+.+.+.. .|+.++|+||+|...|+..
T Consensus 41 ~~Lglt~~PG~k~~d~~RdL~~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp--~L~~~~~~-~Gi~~~h~PI~D~~aPd~~ 117 (168)
T PF05706_consen 41 GFLGLTFLPGCKFKDWRRDLQADLERLKDWGAQDVVTLLTDHELARLGVP--DLGEAAQA-RGIAWHHLPIPDGSAPDFA 117 (168)
T ss_dssp SEEEEES-TT-EETTEEB-HHHHHHHHHHTT--EEEE-S-HHHHHHTT-T--THHHHHHH-TT-EEEE----TTS---HH
T ss_pred ceeeeecCCCcccccccchHHHHHHHHHHCCCCEEEEeCcHHHHHHcCCc--cHHHHHHH-cCCEEEecCccCCCCCCHH
Confidence 35788888743 357789999999999999999999888874 33344444 5999999999999999865
Q ss_pred hhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHh-CCCHHHHH
Q 040474 79 MRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVL-GYKLNEAH 130 (283)
Q Consensus 79 ~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~-~~~~~~A~ 130 (283)
. +.++++.+...+ ++|++|+|||++|+||||++++++|+... .+++++|+
T Consensus 118 ~-~~~i~~eL~~~L-~~g~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 118 A-AWQILEELAARL-ENGRKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp H-HHHHHHHHHHHH-HTT--EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred H-HHHHHHHHHHHH-HcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 3 446778888887 56889999999999999999999988543 48898886
No 15
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.74 E-value=2.3e-17 Score=134.37 Aligned_cols=125 Identities=17% Similarity=0.280 Sum_probs=80.2
Q ss_pred CccccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchh---H
Q 040474 1 MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFD---L 77 (283)
Q Consensus 1 m~~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~---~ 77 (283)
.||..|.++||.|++| .+.++..|+++|+++||+|+.+... .+...++.. .++.++++++.....+. .
T Consensus 5 ~nF~~V~~~vYRS~~P-~~~n~~fL~~L~LKTII~L~~e~~~-------~~~~~f~~~-~~I~l~~~~~~~~~~~~~~~~ 75 (164)
T PF03162_consen 5 LNFGMVEPGVYRSAQP-TPANFPFLERLGLKTIINLRPEPPS-------QDFLEFAEE-NGIKLIHIPMSSSKDPWVPIS 75 (164)
T ss_dssp TT-EEEETTEEEESS---HHHHHHHHHHT-SEEEE--SS----------HHHHHHHHH-TT-EEEE-------GGG----
T ss_pred ccccCCCCCccCCCCC-ChhhHHHHHHCCCceEEEecCCCCC-------HHHHHHHhh-cCceEEEeccccccCccccCC
Confidence 4899999999999997 8999999999999999999976522 233333344 69999999997655421 1
Q ss_pred hhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCC
Q 040474 78 RMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRP 138 (283)
Q Consensus 78 ~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~ 138 (283)
...+.++++.| ++....+|||||..|..|||++++||- +.+||++..|++-.+..-.
T Consensus 76 ~~~v~~aL~~i---ld~~n~PvLiHC~~G~~rTG~vvg~lR-k~Q~W~~~~i~~Ey~~f~~ 132 (164)
T PF03162_consen 76 EEQVAEALEII---LDPRNYPVLIHCNHGKDRTGLVVGCLR-KLQGWSLSSIFDEYRRFAG 132 (164)
T ss_dssp HHHHHHHHHHH---H-GGG-SEEEE-SSSSSHHHHHHHHHH-HHTTB-HHHHHHHHHHHHG
T ss_pred HHHHHHHHHHH---hCCCCCCEEEEeCCCCcchhhHHHHHH-HHcCCCHHHHHHHHHHhcC
Confidence 22344444443 344457999999999999999999998 7899999999988876443
No 16
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.67 E-value=1.7e-15 Score=119.87 Aligned_cols=127 Identities=17% Similarity=0.116 Sum_probs=91.5
Q ss_pred ccccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhH
Q 040474 2 TYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRL 81 (283)
Q Consensus 2 ~~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~ 81 (283)
++.+|.+.+|+++.+ ++.+++.|+++||++|||++.+.|.+.... .....+.+ ...|+.|+++|+.......
T Consensus 1 ~~~~i~~~~~~s~ql-t~~d~~~L~~~GiktVIdlR~~~E~~~~p~-~~~~~~~a-~~~gl~y~~iPv~~~~~~~----- 72 (135)
T TIGR01244 1 DIRKLTEHLYVSPQL-TKADAAQAAQLGFKTVINNRPDREEESQPD-FAQIKAAA-EAAGVTYHHQPVTAGDITP----- 72 (135)
T ss_pred CceEcCCCeeEcCCC-CHHHHHHHHHCCCcEEEECCCCCCCCCCCC-HHHHHHHH-HHCCCeEEEeecCCCCCCH-----
Confidence 357899999999997 999999999999999999998776543221 11212222 2359999999997543211
Q ss_pred HHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCC
Q 040474 82 PAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPC 139 (283)
Q Consensus 82 ~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~ 139 (283)
+.+..+.+.+....++||+||++|. ||+++.+.++. ..|++.+++++..+...-.
T Consensus 73 -~~v~~f~~~~~~~~~pvL~HC~sG~-Rt~~l~al~~~-~~g~~~~~i~~~~~~~G~~ 127 (135)
T TIGR01244 73 -DDVETFRAAIGAAEGPVLAYCRSGT-RSSLLWGFRQA-AEGVPVEEIVRRAQAAGYD 127 (135)
T ss_pred -HHHHHHHHHHHhCCCCEEEEcCCCh-HHHHHHHHHHH-HcCCCHHHHHHHHHHcCCC
Confidence 1223333444444688999999999 99887766665 5899999999998876544
No 17
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.66 E-value=4.4e-16 Score=129.19 Aligned_cols=79 Identities=30% Similarity=0.421 Sum_probs=68.6
Q ss_pred CCCeEEEEEeccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhC-CCHHHHHHHHHhhC
Q 040474 59 YDDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLG-YKLNEAHQLLLSKR 137 (283)
Q Consensus 59 ~~~i~~~~ipi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~-~~~~~A~~~v~~~r 137 (283)
..++.++++|+.|...+++ ..+.+++++|..++ +.|++|+|||.+|+|||||+++||||.+.+ +..++|+..++.+|
T Consensus 70 ~~~~~~~~~~~~D~~~p~~-~~l~~~v~~i~~~~-~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r 147 (180)
T COG2453 70 NDGIQVLHLPILDGTVPDL-EDLDKIVDFIEEAL-SKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRR 147 (180)
T ss_pred cCCceeeeeeecCCCCCcH-HHHHHHHHHHHHHH-hcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhcC
Confidence 4689999999999999987 58999999999998 556799999999999999999999999854 55777777777777
Q ss_pred CC
Q 040474 138 PC 139 (283)
Q Consensus 138 ~~ 139 (283)
+.
T Consensus 148 ~~ 149 (180)
T COG2453 148 PG 149 (180)
T ss_pred Cc
Confidence 73
No 18
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=99.63 E-value=1e-15 Score=135.20 Aligned_cols=97 Identities=28% Similarity=0.477 Sum_probs=84.5
Q ss_pred ccceEEEEeeCCCcceEEEeeccCCCCccccceeecC-CCeEEEEEecCCceEEEEEEECCEeeecCCcceeecCCCCCc
Q 040474 158 RKELVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKE-QGLWILKRELPEGRYEYKYIVDGEWTCNKYELVSSPNKDGHV 236 (283)
Q Consensus 158 ~~~~v~f~w~~~g~~~v~l~Gsf~~W~~~~pl~~~~~-~~~~~~~~~l~~g~y~ykf~vdg~w~~d~~~~~~~~~~~G~~ 236 (283)
...++.|+|..++ +.|++.|||.+|..++++.+... .|.|.+.++|++|.|+|||+|||+|.+|++.|+. .|..|+.
T Consensus 78 ~~~pvvi~W~~gg-~~v~v~gS~~nWk~~~~l~~~~~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta-~d~~Gn~ 155 (289)
T KOG1616|consen 78 QGRPTVIRWSQGG-KEVYVDGSFGNWKTKIPLVRSGKNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTA-EDSLGNL 155 (289)
T ss_pred cCCceEEEecCCC-ceEEEecccccccccccceecCCCcccceeeEecCCceEEEEEecCCceecCCCCccc-ccccCCc
Confidence 3479999999997 99999999999999999998643 2349999999999999999999999999999998 5999999
Q ss_pred ceEEEeccCC--CcchHHHhhc
Q 040474 237 NNYVQVDDAP--SSVSEALRNR 256 (283)
Q Consensus 237 nn~i~v~~~~--~~~~~~~~~~ 256 (283)
||+++|.+.. ....++++..
T Consensus 156 ~N~i~v~~~~~v~~~~~~l~~~ 177 (289)
T KOG1616|consen 156 NNILEVQDPDEVFEVFQALEED 177 (289)
T ss_pred ccceEecCccccchhhhhhhhh
Confidence 9999999966 5555665544
No 19
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.62 E-value=3.8e-15 Score=113.02 Aligned_cols=104 Identities=21% Similarity=0.221 Sum_probs=63.0
Q ss_pred ccccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhH
Q 040474 2 TYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRL 81 (283)
Q Consensus 2 ~~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~ 81 (283)
+|.+|.+.++++++| ++++++.|++.|+++|||++++.|.+.. .......+.+.. .|+.|+|+|+.... ..
T Consensus 1 di~~i~~~~~vs~Q~-~~~d~~~la~~GfktVInlRpd~E~~~q-p~~~~~~~~a~~-~Gl~y~~iPv~~~~-~~----- 71 (110)
T PF04273_consen 1 DIRQISDDLSVSGQP-SPEDLAQLAAQGFKTVINLRPDGEEPGQ-PSSAEEAAAAEA-LGLQYVHIPVDGGA-IT----- 71 (110)
T ss_dssp --EEEETTEEEECS---HHHHHHHHHCT--EEEE-S-TTSTTT--T-HHCHHHHHHH-CT-EEEE----TTT--------
T ss_pred CCEecCCCeEECCCC-CHHHHHHHHHCCCcEEEECCCCCCCCCC-CCHHHHHHHHHH-cCCeEEEeecCCCC-CC-----
Confidence 578999999999997 9999999999999999999988764321 123333444444 69999999997533 22
Q ss_pred HHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHH
Q 040474 82 PAVISKLYKAINRNGGVTYVHCTAGLGRAPAVAL 115 (283)
Q Consensus 82 ~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ 115 (283)
.+.++.+.+.+.+..++||+||+.|. ||+++.+
T Consensus 72 ~~~v~~f~~~l~~~~~Pvl~hC~sG~-Ra~~l~~ 104 (110)
T PF04273_consen 72 EEDVEAFADALESLPKPVLAHCRSGT-RASALWA 104 (110)
T ss_dssp HHHHHHHHHHHHTTTTSEEEE-SCSH-HHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCCh-hHHHHHH
Confidence 22334445556566789999999997 9966544
No 20
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=99.53 E-value=2e-13 Score=104.25 Aligned_cols=120 Identities=24% Similarity=0.315 Sum_probs=89.9
Q ss_pred cHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchh--HhhhHHHHHHHHHHHHHcCCCE
Q 040474 21 DVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFD--LRMRLPAVISKLYKAINRNGGV 98 (283)
Q Consensus 21 ~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~--~~~~~~~~~~~i~~~l~~~~~~ 98 (283)
-++.|+++|+++||-+++..- +.... +.+||..+..|++|...+. +.+.+-+.+.. ...+..|..
T Consensus 33 fieELkKygvttvVRVCe~TY------dt~~l-----ek~GI~Vldw~f~dg~ppp~qvv~~w~~l~~~--~f~e~p~~c 99 (173)
T KOG2836|consen 33 FIEELKKYGVTTVVRVCEPTY------DTTPL-----EKEGITVLDWPFDDGAPPPNQVVDDWLSLVKT--KFREEPGCC 99 (173)
T ss_pred HHHHHHhcCCeEEEEeccccc------CCchh-----hhcCceEeecccccCCCCchHHHHHHHHHHHH--HHhhCCCCe
Confidence 357899999999999987651 11111 2369999999999876554 11222222221 222457888
Q ss_pred EEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCCChhHHHHhHHhhhhcccc
Q 040474 99 TYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILTGLRK 159 (283)
Q Consensus 99 VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~pn~~~~~~~~~~~~~~~~~ 159 (283)
|-|||.+|+||++.+++.-|+ ..||..++|++++|++|.. ++.+.|..|++.+..
T Consensus 100 vavhcvaglgrapvlvalali-e~gmkyedave~ir~krrg-----a~n~kql~~lekyrp 154 (173)
T KOG2836|consen 100 VAVHCVAGLGRAPVLVALALI-EAGMKYEDAVEMIRQKRRG-----AINSKQLLYLEKYRP 154 (173)
T ss_pred EEEEeecccCcchHHHHHHHH-HccccHHHHHHHHHHHhhc-----cccHHHHHHHHHhCc
Confidence 999999999999998888887 8999999999999999986 578889999988754
No 21
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.52 E-value=4e-13 Score=100.58 Aligned_cols=124 Identities=19% Similarity=0.235 Sum_probs=95.6
Q ss_pred CccccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhh
Q 040474 1 MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMR 80 (283)
Q Consensus 1 m~~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~ 80 (283)
|++.+|.+.+.+++++ +..|+..++.+|++.|||.+++.|.+. .....++...+.. .|+.|.++|+.-.....
T Consensus 1 M~i~~I~d~lsVsgQi-~~~D~~~iaa~GFksiI~nRPDgEe~~-QP~~~~i~~aa~~-aGl~y~~iPV~~~~iT~---- 73 (130)
T COG3453 1 MDIRRINDRLSVSGQI-SPADIASIAALGFKSIICNRPDGEEPG-QPGFAAIAAAAEA-AGLTYTHIPVTGGGITE---- 73 (130)
T ss_pred CCceecccceeecCCC-CHHHHHHHHHhccceecccCCCCCCCC-CCChHHHHHHHHh-cCCceEEeecCCCCCCH----
Confidence 7899999999999997 999999999999999999999887633 2334555555444 69999999997644432
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHh
Q 040474 81 LPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLS 135 (283)
Q Consensus 81 ~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~ 135 (283)
..++.+.+++.+.+++||.||+.|- || +.+...--...||+.+++..+-++
T Consensus 74 --~dV~~f~~Al~eaegPVlayCrsGt-Rs-~~ly~~~~~~~gm~~de~~a~g~a 124 (130)
T COG3453 74 --ADVEAFQRALDEAEGPVLAYCRSGT-RS-LNLYGLGELDGGMSRDEIEALGQA 124 (130)
T ss_pred --HHHHHHHHHHHHhCCCEEeeecCCc-hH-HHHHHHHHHhcCCCHHHHHHHHHh
Confidence 3456667777777899999999995 98 444444446789999988776554
No 22
>PLN02727 NAD kinase
Probab=99.41 E-value=1.7e-12 Score=127.16 Aligned_cols=110 Identities=16% Similarity=0.148 Sum_probs=81.4
Q ss_pred CeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhHHHHHHHH
Q 040474 9 DLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLPAVISKL 88 (283)
Q Consensus 9 ~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~~~~~~~i 88 (283)
.+|++++| +++++++|++.||++|||++++.+. .+....+..+.+.. .|++|+++|+.+...+.. +.+.++.+.+
T Consensus 262 ~~~rsgQp-spe~la~LA~~GfKTIINLRpd~E~--~q~~~~ee~eAae~-~GL~yVhIPVs~~~apt~-EqVe~fa~~l 336 (986)
T PLN02727 262 AFWRGGQV-TEEGLKWLLEKGFKTIVDLRAEIVK--DNFYQAAVDDAISS-GKIEVVKIPVEVRTAPSA-EQVEKFASLV 336 (986)
T ss_pred eEEEeCCC-CHHHHHHHHHCCCeEEEECCCCCcC--CCchhHHHHHHHHH-cCCeEEEeecCCCCCCCH-HHHHHHHHHH
Confidence 47999997 9999999999999999999998762 22223334444444 699999999977555442 2344444444
Q ss_pred HHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCH
Q 040474 89 YKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKL 126 (283)
Q Consensus 89 ~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~ 126 (283)
.+ ...++||+||++|..|+|+++++|+.+.-+...
T Consensus 337 ~~---slpkPVLvHCKSGarRAGamvA~yl~~~~~~~~ 371 (986)
T PLN02727 337 SD---SSKKPIYLHSKEGVWRTSAMVSRWKQYMTRSAE 371 (986)
T ss_pred Hh---hcCCCEEEECCCCCchHHHHHHHHHHHHcccch
Confidence 22 346799999999999999999999997766543
No 23
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=99.25 E-value=2.5e-11 Score=99.23 Aligned_cols=117 Identities=26% Similarity=0.378 Sum_probs=63.4
Q ss_pred cccCC-eEEcCCCCC--cccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchh---Hh
Q 040474 5 FIRPD-LIVGSCLQT--PEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFD---LR 78 (283)
Q Consensus 5 ~I~~~-l~lG~~p~~--~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~---~~ 78 (283)
.|-++ ||.++.+.. +++.+.|+++||++||+|+.+.|..... .....++.++++|+.+..... +.
T Consensus 15 ~ir~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p---------~~~~~g~~~~~~p~~~~~~~~~~~~~ 85 (164)
T PF13350_consen 15 RIRPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAP---------DPLIDGVQYVHIPIFGDDASSPDKLA 85 (164)
T ss_dssp TS-TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS-------------TT-EEEE--SS-S-TTH-----
T ss_pred eecCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCC---------CCCcCCceeeeecccccccccccccc
Confidence 45566 888887632 5678899999999999999877543211 012358999999997644331 10
Q ss_pred ----------hhH-----------HHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHH
Q 040474 79 ----------MRL-----------PAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQ 131 (283)
Q Consensus 79 ----------~~~-----------~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~ 131 (283)
..+ .+.+..+.+.+.+..++||+||.+|+.|||.+++..| ...|.+.++.++
T Consensus 86 ~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll-~~lGV~~~~I~~ 158 (164)
T PF13350_consen 86 ELLQSSADAPRGMLEFYREMLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLL-SLLGVPDEDIIA 158 (164)
T ss_dssp -----HHHHHHHHHHHHHHGGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHH-HHTT--HHHHHH
T ss_pred cccccccchhhHHHHHHHHHHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHH-HHcCCCHHHHHH
Confidence 000 1234444444444557999999999999987766665 489998887765
No 24
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.19 E-value=1.5e-10 Score=84.11 Aligned_cols=77 Identities=27% Similarity=0.438 Sum_probs=64.5
Q ss_pred ceEEEEeeCCCcceEEEeeccCCCCccccceeecCCCeEEEEEe-cCCceEEEEEEECCEeeecCCcceeecCCCCCcce
Q 040474 160 ELVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRE-LPEGRYEYKYIVDGEWTCNKYELVSSPNKDGHVNN 238 (283)
Q Consensus 160 ~~v~f~w~~~g~~~v~l~Gsf~~W~~~~pl~~~~~~~~~~~~~~-l~~g~y~ykf~vdg~w~~d~~~~~~~~~~~G~~nn 238 (283)
..++|+.-.+.+++|.|.|+|++|. ..+|.+. ++|.|++++. |++|.|+|+|++||.++.||.++....+ .+..-|
T Consensus 6 ~~v~F~vwAP~A~~V~L~~~~~~~~-~~~m~~~-~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~~~~~-~~~~~~ 82 (85)
T cd02858 6 RTVTFRLFAPKANEVQVRGSWGGAG-SHPMTKD-EAGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPTTKPG-RQVDTS 82 (85)
T ss_pred CcEEEEEECCCCCEEEEEeecCCCc-cEeCeEC-CCeEEEEEECCCCCcEEEEEEEECCeEecCCCCCceeec-ccccce
Confidence 4688998888899999999999876 5789886 5899999984 8899999999999999999999988645 344433
Q ss_pred E
Q 040474 239 Y 239 (283)
Q Consensus 239 ~ 239 (283)
.
T Consensus 83 ~ 83 (85)
T cd02858 83 G 83 (85)
T ss_pred e
Confidence 3
No 25
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=99.19 E-value=3e-10 Score=95.26 Aligned_cols=125 Identities=13% Similarity=0.211 Sum_probs=94.5
Q ss_pred CccccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCC------c
Q 040474 1 MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFD------A 74 (283)
Q Consensus 1 m~~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~------~ 74 (283)
+||+-|.++||-|++| .+.++.+|+.++.+.||.|+.+... +.-..++.. .+|.+.+|-+.... .
T Consensus 58 lnFs~V~~~lyRSg~P-~~~NfsFL~~L~LksIisL~pE~yp-------~~nl~f~~~-~~Ik~~~i~ie~~k~~~k~P~ 128 (249)
T KOG1572|consen 58 LNFSMVDNGLYRSGFP-RPENFSFLKTLHLKSIISLCPEPYP-------EENLNFLES-NGIKLYQIGIEGEKDNKKEPF 128 (249)
T ss_pred ccccccccceeecCCC-CccchHHHHHhhhheEEEecCCCCC-------hHHHHHHHh-cCceEEEEecccccccccCCC
Confidence 5899999999999997 9999999999999999999987621 122234444 68999999996433 1
Q ss_pred hh-HhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCC
Q 040474 75 FD-LRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRP 138 (283)
Q Consensus 75 ~~-~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~ 138 (283)
.+ ....+..+++. .+...+.++||||..|..|+|+++.|.- +.++|++.-.++-.+..-.
T Consensus 129 ~~~~~~~i~~~l~~---lld~~N~P~Lihc~rGkhRtg~lVgclR-klq~W~lssil~Ey~~fa~ 189 (249)
T KOG1572|consen 129 VNIPDHSIRKALKV---LLDKRNYPILIHCKRGKHRTGCLVGCLR-KLQNWSLSSILDEYLRFAG 189 (249)
T ss_pred CCChHHHHHHHHHH---HhcccCCceEEecCCCCcchhhhHHHHH-HHhccchhHHHHHHHHhcc
Confidence 22 22334555554 4445678999999999999999888876 7899998888776655444
No 26
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.18 E-value=1e-10 Score=87.54 Aligned_cols=78 Identities=18% Similarity=0.260 Sum_probs=58.3
Q ss_pred EEEEEeccCCCchhHhhhHHHHHHHHHHHHHc--CCCEEEEEcCCCCChhHHHHHHHHHHHh------CCCHHHHHHHHH
Q 040474 63 QHIRAEIRDFDAFDLRMRLPAVISKLYKAINR--NGGVTYVHCTAGLGRAPAVALAYMFWVL------GYKLNEAHQLLL 134 (283)
Q Consensus 63 ~~~~ipi~D~~~~~~~~~~~~~~~~i~~~l~~--~~~~VlVHC~~G~~RS~~v~~ayLm~~~------~~~~~~A~~~v~ 134 (283)
.|.+.+++|...|+....+.+.++.+...... .+++|+|||.+|+||||+++++|++... -.++.+++..+|
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00012 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 35556677776665444566666666655422 2679999999999999999999988654 267889999999
Q ss_pred hhCCCC
Q 040474 135 SKRPCF 140 (283)
Q Consensus 135 ~~r~~~ 140 (283)
..|+..
T Consensus 84 ~~r~~~ 89 (105)
T smart00012 84 KQRPGM 89 (105)
T ss_pred hhhhhh
Confidence 999974
No 27
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.18 E-value=1e-10 Score=87.54 Aligned_cols=78 Identities=18% Similarity=0.260 Sum_probs=58.3
Q ss_pred EEEEEeccCCCchhHhhhHHHHHHHHHHHHHc--CCCEEEEEcCCCCChhHHHHHHHHHHHh------CCCHHHHHHHHH
Q 040474 63 QHIRAEIRDFDAFDLRMRLPAVISKLYKAINR--NGGVTYVHCTAGLGRAPAVALAYMFWVL------GYKLNEAHQLLL 134 (283)
Q Consensus 63 ~~~~ipi~D~~~~~~~~~~~~~~~~i~~~l~~--~~~~VlVHC~~G~~RS~~v~~ayLm~~~------~~~~~~A~~~v~ 134 (283)
.|.+.+++|...|+....+.+.++.+...... .+++|+|||.+|+||||+++++|++... -.++.+++..+|
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00404 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 35556677776665444566666666655422 2679999999999999999999988654 267889999999
Q ss_pred hhCCCC
Q 040474 135 SKRPCF 140 (283)
Q Consensus 135 ~~r~~~ 140 (283)
..|+..
T Consensus 84 ~~r~~~ 89 (105)
T smart00404 84 KQRPGM 89 (105)
T ss_pred hhhhhh
Confidence 999974
No 28
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=99.06 E-value=3.3e-11 Score=111.62 Aligned_cols=121 Identities=20% Similarity=0.293 Sum_probs=86.2
Q ss_pred CccccccCCeEEcCCCCCcccHHHHHhcCCc--------------EEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEE
Q 040474 1 MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVK--------------TIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIR 66 (283)
Q Consensus 1 m~~~~I~~~l~lG~~p~~~~~~~~L~~~gI~--------------~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ 66 (283)
|+++.|+++|.+.++| +...+.+.++.+. .|.||+.+.- +... .. .-....
T Consensus 13 LDltYIT~rIIamsfP--a~~~es~yRN~l~dV~~fL~s~H~~~y~vyNL~~er~---yd~~---------~f-~g~V~~ 77 (434)
T KOG2283|consen 13 LDLTYITSRIIAMSFP--AEGIESLYRNNLEDVVLFLDSKHKDHYKVYNLSSERL---YDPS---------RF-HGRVAR 77 (434)
T ss_pred ccceeeeeeEEEEeCC--CCcchhhhcCCHHHHHHHHhhccCCceEEEecCcccc---CCcc---------cc-ccceee
Confidence 6889999999999998 3333333333332 3556664220 0000 01 123455
Q ss_pred EeccCCCchhHhhhHHHHHHHHHHHHHc-CCCEEEEEcCCCCChhHHHHHHHHHHHhCCC-HHHHHHHHHhhC
Q 040474 67 AEIRDFDAFDLRMRLPAVISKLYKAINR-NGGVTYVHCTAGLGRAPAVALAYMFWVLGYK-LNEAHQLLLSKR 137 (283)
Q Consensus 67 ipi~D~~~~~~~~~~~~~~~~i~~~l~~-~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~-~~~A~~~v~~~r 137 (283)
++++|...|.+. .+..+|+-++..+.+ ....|.|||++|++|||++++||||+..... +++|+.+.-.+|
T Consensus 78 ~~~~Dh~~P~L~-~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR 149 (434)
T KOG2283|consen 78 FGFDDHNPPPLE-LLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKR 149 (434)
T ss_pred cCCCCCCCCcHH-HHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhh
Confidence 899999888866 556678888888754 4567999999999999999999999776665 999999999999
No 29
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=98.96 E-value=3e-09 Score=91.64 Aligned_cols=79 Identities=22% Similarity=0.297 Sum_probs=56.4
Q ss_pred eEEEEEe-ccCCCchhHhhhHHHHHHHHHHHHH-cCCCEEEEEcCCCCChhHHHHHHHHHHHh-----CCCHHHHHHHHH
Q 040474 62 IQHIRAE-IRDFDAFDLRMRLPAVISKLYKAIN-RNGGVTYVHCTAGLGRAPAVALAYMFWVL-----GYKLNEAHQLLL 134 (283)
Q Consensus 62 i~~~~ip-i~D~~~~~~~~~~~~~~~~i~~~l~-~~~~~VlVHC~~G~~RS~~v~~ayLm~~~-----~~~~~~A~~~v~ 134 (283)
+.++++. ++|...++....+.++++.+..... ..+++|+|||.+|+||||++++++++... .+++.+|+..+|
T Consensus 130 V~~~~~~~W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR 209 (231)
T cd00047 130 VTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELR 209 (231)
T ss_pred EEEEeECCCCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3444433 5666655544445555555554431 13679999999999999999999876443 589999999999
Q ss_pred hhCCCC
Q 040474 135 SKRPCF 140 (283)
Q Consensus 135 ~~r~~~ 140 (283)
+.|+..
T Consensus 210 ~~R~~~ 215 (231)
T cd00047 210 SQRPGM 215 (231)
T ss_pred hccccc
Confidence 999975
No 30
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=98.86 E-value=7.7e-09 Score=90.62 Aligned_cols=73 Identities=21% Similarity=0.284 Sum_probs=53.7
Q ss_pred eccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHH-----hCCCHHHHHHHHHhhCCCC
Q 040474 68 EIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWV-----LGYKLNEAHQLLLSKRPCF 140 (283)
Q Consensus 68 pi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~-----~~~~~~~A~~~v~~~r~~~ 140 (283)
.++|...|.....+.+.+..+.......+++|+|||.+|+||||++++++++.. ...++.+++..+|+.|+..
T Consensus 165 ~W~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~~ 242 (258)
T smart00194 165 NWPDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPGM 242 (258)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhccccc
Confidence 445666664333455555555554322267999999999999999999987643 3689999999999999985
No 31
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=98.76 E-value=8.1e-08 Score=75.35 Aligned_cols=115 Identities=18% Similarity=0.171 Sum_probs=77.1
Q ss_pred HHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccC-----CC-chhHhhhHHHHHHHHHHHHHcCC
Q 040474 23 DKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRD-----FD-AFDLRMRLPAVISKLYKAINRNG 96 (283)
Q Consensus 23 ~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D-----~~-~~~~~~~~~~~~~~i~~~l~~~~ 96 (283)
+.-.+.|-+++|++...... +..+. . ...-.++.+-+.| .+ ...-..+...+++|+++. ...
T Consensus 26 e~~~rh~~t~mlsl~a~~t~--~~~pa-~-------~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~w--p~~ 93 (172)
T COG5350 26 ETAARHGPTHMLSLLAKGTY--FHRPA-V-------IAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEW--PRF 93 (172)
T ss_pred HHHhhcCCceEEEeeccccc--ccCcc-c-------cchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcC--ccc
Confidence 44458999999999875321 11110 0 0001233333333 22 111235788899999888 345
Q ss_pred CEEEEEcCCCCChhHHHHHH-HHHHHhCCCHHHHHHHHHhhCCCC-CChhHHHHh
Q 040474 97 GVTYVHCTAGLGRAPAVALA-YMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKSA 149 (283)
Q Consensus 97 ~~VlVHC~~G~~RS~~v~~a-yLm~~~~~~~~~A~~~v~~~r~~~-pn~~~~~~~ 149 (283)
.++||||.+|+|||.+++.. -|.....+...+..+.++..+|.. ||...+.-+
T Consensus 94 apllIHC~aGISRStA~A~i~a~ala~~~de~ela~~Lra~sp~atPN~RliaI~ 148 (172)
T COG5350 94 APLLIHCYAGISRSTAAALIAALALAPDMDETELAERLRALSPYATPNPRLIAIA 148 (172)
T ss_pred cceeeeeccccccchHHHHHHHHhhccccChHHHHHHHHhcCcccCCChhHHHHH
Confidence 78999999999999875443 355578899999999999999998 999877653
No 32
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.76 E-value=4.5e-08 Score=69.99 Aligned_cols=68 Identities=34% Similarity=0.557 Sum_probs=60.0
Q ss_pred ceEEEEeeCCCcceEEEeeccCCCCccccceeecCCCeEEEEEecCC-ceEEEEEEECCEeeecCCccee
Q 040474 160 ELVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPE-GRYEYKYIVDGEWTCNKYELVS 228 (283)
Q Consensus 160 ~~v~f~w~~~g~~~v~l~Gsf~~W~~~~pl~~~~~~~~~~~~~~l~~-g~y~ykf~vdg~w~~d~~~~~~ 228 (283)
+.++|++..+++++|.+.+.|++|...++|.+. .+|.|.+.+.+.+ +.|.|+|.|||.|..++.++..
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~-~~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~~ 72 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKV-EDGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPKA 72 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECCCCCcccCEEC-CCceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChhh
Confidence 468999999999999999999987677899876 5699999999887 9999999999999999988544
No 33
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.61 E-value=1.2e-07 Score=88.44 Aligned_cols=95 Identities=14% Similarity=0.202 Sum_probs=60.9
Q ss_pred eEEEEE-eccCCCchhHhhhHHHHHHHHHHHHHcC--------CCEEEEEcCCCCChhHHHHHHHHHHHhC-CCHHHHHH
Q 040474 62 IQHIRA-EIRDFDAFDLRMRLPAVISKLYKAINRN--------GGVTYVHCTAGLGRAPAVALAYMFWVLG-YKLNEAHQ 131 (283)
Q Consensus 62 i~~~~i-pi~D~~~~~~~~~~~~~~~~i~~~l~~~--------~~~VlVHC~~G~~RS~~v~~ayLm~~~~-~~~~~A~~ 131 (283)
+.++|+ .++|.+.++....+...++.+....... ....+|||.+|+||||+++++++|...+ .++++.+.
T Consensus 423 V~QFHyTnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~ 502 (535)
T PRK15375 423 IPVLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRA 502 (535)
T ss_pred EEEEEeCCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHHHHHH
Confidence 333333 4578766543334555555554432111 1224799999999999999999986444 68999999
Q ss_pred HHHhhCCC-CCChhHHHHhHHhhhhccccc
Q 040474 132 LLLSKRPC-FPKLDAIKSATADILTGLRKE 160 (283)
Q Consensus 132 ~v~~~r~~-~pn~~~~~~~~~~~~~~~~~~ 160 (283)
.+|..|+. . ....+|++.+.....+
T Consensus 503 dlR~qRng~M----VQt~eQy~~l~~~~~~ 528 (535)
T PRK15375 503 DFRNSRNNRM----LEDASQFVQLKAMQAQ 528 (535)
T ss_pred HHHhcCCccc----cccHHHHHHHHHHHHH
Confidence 99999987 3 2244666666554433
No 34
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=98.55 E-value=2.6e-07 Score=80.50 Aligned_cols=57 Identities=30% Similarity=0.326 Sum_probs=43.9
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC
Q 040474 84 VISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF 140 (283)
Q Consensus 84 ~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~ 140 (283)
....+.-.+...+++||+||.+|+.|+|.++++|++...+.....+-++++..++..
T Consensus 124 ~~~~~~l~~~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~ 180 (249)
T COG2365 124 LVELLQLLADAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGE 180 (249)
T ss_pred HHHHHHHHhhcccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccc
Confidence 334433343333489999999999999999999999777777778888888877764
No 35
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.52 E-value=2.3e-07 Score=74.52 Aligned_cols=63 Identities=24% Similarity=0.278 Sum_probs=43.2
Q ss_pred HHhhhCCCeEEEEEeccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHH
Q 040474 54 EYAKTYDDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMF 119 (283)
Q Consensus 54 ~~~~~~~~i~~~~ipi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm 119 (283)
+......++.|++||+.|...|. ...|+..++++... ..+..+.+||.+|.|||.+.++.|.|
T Consensus 85 ~~~~~~~g~~Y~Ripitd~~~P~-~~~iD~fi~~v~~~--p~~~~l~fhC~~G~GRTTt~Mv~~~l 147 (149)
T PF14566_consen 85 EELVEGNGLRYYRIPITDHQAPD-PEDIDAFINFVKSL--PKDTWLHFHCQAGRGRTTTFMVMYDL 147 (149)
T ss_dssp HHHHHHTT-EEEEEEE-TTS----HHHHHHHHHHHHTS---TT-EEEEE-SSSSHHHHHHHHHHHH
T ss_pred HHHHhcCCceEEEEeCCCcCCCC-HHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 33344579999999999987665 44677777777665 34678999999999999998888766
No 36
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=98.42 E-value=9.5e-07 Score=79.26 Aligned_cols=45 Identities=27% Similarity=0.199 Sum_probs=36.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHHH-----hCCCHHHHHHHHHhhCCCC
Q 040474 96 GGVTYVHCTAGLGRAPAVALAYMFWV-----LGYKLNEAHQLLLSKRPCF 140 (283)
Q Consensus 96 ~~~VlVHC~~G~~RS~~v~~ayLm~~-----~~~~~~~A~~~v~~~r~~~ 140 (283)
.++|+|||.+|+||||++++...+.. ...+..+++..+|+.|+..
T Consensus 229 ~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~~lR~qR~~~ 278 (303)
T PHA02742 229 EPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRDLRKQRHNC 278 (303)
T ss_pred CCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccc
Confidence 36999999999999999877765432 2457889999999999874
No 37
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=98.41 E-value=7.2e-07 Score=64.43 Aligned_cols=59 Identities=37% Similarity=0.646 Sum_probs=48.8
Q ss_pred ceEEEEeeCCCcceEEEeeccCC-CC-ccccceeecCCCeEEEEEe--cCCceEEEEEEECCE
Q 040474 160 ELVTFSWKGKNCTSVEISGIDIG-WG-QRMPLTFDKEQGLWILKRE--LPEGRYEYKYIVDGE 218 (283)
Q Consensus 160 ~~v~f~w~~~g~~~v~l~Gsf~~-W~-~~~pl~~~~~~~~~~~~~~--l~~g~y~ykf~vdg~ 218 (283)
..++|+.-.+.+++|.|++.+++ |. +.++|.+..++|.|+++++ +++|.++|+|.|||.
T Consensus 11 ~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~ 73 (85)
T PF02922_consen 11 GGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDGD 73 (85)
T ss_dssp TEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEET
T ss_pred CEEEEEEECCCCCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEeC
Confidence 48999999999999999999999 86 6689996446899999998 888888888888755
No 38
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=98.40 E-value=1.2e-06 Score=78.30 Aligned_cols=45 Identities=9% Similarity=0.067 Sum_probs=37.2
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHH-----HhCCCHHHHHHHHHhhCCCC
Q 040474 96 GGVTYVHCTAGLGRAPAVALAYMFW-----VLGYKLNEAHQLLLSKRPCF 140 (283)
Q Consensus 96 ~~~VlVHC~~G~~RS~~v~~ayLm~-----~~~~~~~~A~~~v~~~r~~~ 140 (283)
.++|+|||.+|+||||++++.-.+. ....++.+++..+|+.|+..
T Consensus 221 ~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR~qR~~~ 270 (298)
T PHA02740 221 IAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVRQKKYGC 270 (298)
T ss_pred CCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHHhhCccc
Confidence 4699999999999999988776543 23468899999999999985
No 39
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=98.40 E-value=1.2e-06 Score=78.91 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=36.9
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHH-----HhCCCHHHHHHHHHhhCCCC
Q 040474 97 GVTYVHCTAGLGRAPAVALAYMFW-----VLGYKLNEAHQLLLSKRPCF 140 (283)
Q Consensus 97 ~~VlVHC~~G~~RS~~v~~ayLm~-----~~~~~~~~A~~~v~~~r~~~ 140 (283)
++|+|||.+|+||||++++.-.+. ....+..+++..+|+.|+..
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~lR~qR~~~ 278 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKIREQRHAG 278 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccc
Confidence 689999999999999988776432 23578899999999999985
No 40
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=98.39 E-value=2.2e-06 Score=73.44 Aligned_cols=73 Identities=21% Similarity=0.210 Sum_probs=51.4
Q ss_pred eccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHH-----hCCCHHHHHHHHHhhCCCC
Q 040474 68 EIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWV-----LGYKLNEAHQLLLSKRPCF 140 (283)
Q Consensus 68 pi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~-----~~~~~~~A~~~v~~~r~~~ 140 (283)
.++|...|.....+..+++.+........++|+|||.+|.||||+++++.++.. ...+..+++..+|+.|+..
T Consensus 142 ~W~~~~~P~~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~ 219 (235)
T PF00102_consen 142 NWPDDGVPPSPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPGA 219 (235)
T ss_dssp SSSSSSSGSSSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTS
T ss_pred eccccccccccchhhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCCc
Confidence 445555443233344444554444323568999999999999999888887633 2478999999999999985
No 41
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=98.38 E-value=2.9e-06 Score=63.25 Aligned_cols=71 Identities=24% Similarity=0.423 Sum_probs=56.0
Q ss_pred ceEEEEeeCCCcceEEEeeccCCCC-ccccceeecCCCeEEEEEec--------CCc-eEEEEEEE-CCEe--eecCCcc
Q 040474 160 ELVTFSWKGKNCTSVEISGIDIGWG-QRMPLTFDKEQGLWILKREL--------PEG-RYEYKYIV-DGEW--TCNKYEL 226 (283)
Q Consensus 160 ~~v~f~w~~~g~~~v~l~Gsf~~W~-~~~pl~~~~~~~~~~~~~~l--------~~g-~y~ykf~v-dg~w--~~d~~~~ 226 (283)
..++|+--.+.+++|+|+|+|++|+ ...+|.+. +.|.|++.++. +.| .|.|.+.. ||+| +.||-+-
T Consensus 5 ~g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~-~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA~ 83 (99)
T cd02854 5 GGVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKD-EFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWIK 83 (99)
T ss_pred CeEEEEEECCCCCEEEEEccCCCCCCcCcccEEC-CCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCccee
Confidence 4688999999999999999999998 35789986 58999999874 355 56666666 7887 5788877
Q ss_pred eeecC
Q 040474 227 VSSPN 231 (283)
Q Consensus 227 ~~~~~ 231 (283)
..+.+
T Consensus 84 ~~~~~ 88 (99)
T cd02854 84 YVTQD 88 (99)
T ss_pred EEEeC
Confidence 66533
No 42
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=98.33 E-value=2.4e-06 Score=77.26 Aligned_cols=44 Identities=27% Similarity=0.278 Sum_probs=36.6
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHH-----HhCCCHHHHHHHHHhhCCCC
Q 040474 97 GVTYVHCTAGLGRAPAVALAYMFW-----VLGYKLNEAHQLLLSKRPCF 140 (283)
Q Consensus 97 ~~VlVHC~~G~~RS~~v~~ayLm~-----~~~~~~~~A~~~v~~~r~~~ 140 (283)
++|+|||.+|+||||++++.-.+. ...++..+++..+|..|+..
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~lR~qR~~~ 296 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKIRKQRHSS 296 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccc
Confidence 689999999999999988765432 23578999999999999985
No 43
>PHA02738 hypothetical protein; Provisional
Probab=98.23 E-value=4.3e-06 Score=75.58 Aligned_cols=45 Identities=22% Similarity=0.287 Sum_probs=36.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHHH-----hCCCHHHHHHHHHhhCCCC
Q 040474 96 GGVTYVHCTAGLGRAPAVALAYMFWV-----LGYKLNEAHQLLLSKRPCF 140 (283)
Q Consensus 96 ~~~VlVHC~~G~~RS~~v~~ayLm~~-----~~~~~~~A~~~v~~~r~~~ 140 (283)
.++|+|||.+|+||||++++.-.+.. ...+..+++..+|+.|+..
T Consensus 227 ~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V~~lR~qR~~~ 276 (320)
T PHA02738 227 PPPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSIVSSIRNQRYYS 276 (320)
T ss_pred CCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHHHHHHHhhhhhc
Confidence 36899999999999999766654322 2468889999999999985
No 44
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=98.00 E-value=0.00011 Score=69.01 Aligned_cols=131 Identities=17% Similarity=0.189 Sum_probs=93.5
Q ss_pred cccCCeEEcCCCCCcccH----HHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCC--CchhHh
Q 040474 5 FIRPDLIVGSCLQTPEDV----DKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDF--DAFDLR 78 (283)
Q Consensus 5 ~I~~~l~lG~~p~~~~~~----~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~--~~~~~~ 78 (283)
.+..+||+|... ..-.. ..-....+..||+|.+...... .......++++|+... +..++.
T Consensus 291 ~~~~~i~ig~~~-~~l~~~~~~~~~~~~~~~~vI~~s~~~~~~~------------~~~~~~~~L~l~i~~~K~gs~~LR 357 (451)
T PF04179_consen 291 PGTTGIYIGKIS-SNLAISKAQLPDLESEFDCVINCSESPTPKE------------SWPKSPKYLHLPIPSSKKGSRDLR 357 (451)
T ss_pred cCCCCeEEeccC-CccccchhhccccCCCcCEEEEcCCCccccc------------ccCCCceEEeCcCCCCcccHHHHH
Confidence 346789999985 31111 1112567889999987653210 0124578999999764 345678
Q ss_pred hhHHHHHHHHHHHHHc-CCCEEEEEcCCCCChhHHHHHHHHHHHhCCC----------------HHHHHHHHHhhCCCC-
Q 040474 79 MRLPAVISKLYKAINR-NGGVTYVHCTAGLGRAPAVALAYMFWVLGYK----------------LNEAHQLLLSKRPCF- 140 (283)
Q Consensus 79 ~~~~~~~~~i~~~l~~-~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~----------------~~~A~~~v~~~r~~~- 140 (283)
..|++++.|+...+.+ .+.+|||+|..|...|..+++|.|+..+... ..+-+.+|-+.+|.+
T Consensus 358 ~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~~g~~~~~~~~~~itK~~IR~rL~~I~~~~p~aN 437 (451)
T PF04179_consen 358 KALPKICSFVRSHLSSDPGKPILVCCDSGKDLSVGVALAILCKLFDDDGNFRDSFERPSITKDDIRQRLAWIISSRPDAN 437 (451)
T ss_pred HHHHHHHHHHHHHhcccCCCcEEEEcCCcchHHHHHHHHHHHHhcCcccCcccccccCCCCHHHHHHHHHHHHHhCCCCC
Confidence 8899999999998854 3789999999999999999999999877541 234477777788776
Q ss_pred CChhHHHH
Q 040474 141 PKLDAIKS 148 (283)
Q Consensus 141 pn~~~~~~ 148 (283)
|+++.+++
T Consensus 438 PSRaTLqs 445 (451)
T PF04179_consen 438 PSRATLQS 445 (451)
T ss_pred CCHHHHHH
Confidence 88877765
No 45
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=98.00 E-value=2.2e-05 Score=78.44 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=54.5
Q ss_pred eccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHH-----hCCCHHHHHHHHHhhCCCC-C
Q 040474 68 EIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWV-----LGYKLNEAHQLLLSKRPCF-P 141 (283)
Q Consensus 68 pi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~-----~~~~~~~A~~~v~~~r~~~-p 141 (283)
-++|.+.|+-...|.+.++.|....+..+.+|+|||.||+||||+++++=+|.. ..+..-+.+..+|..|-.. +
T Consensus 1035 aWPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~mVQ 1114 (1144)
T KOG0792|consen 1035 AWPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRAMMVQ 1114 (1144)
T ss_pred ccccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcc
Confidence 567777777666777777777666533356999999999999999776544322 2456778888888888764 4
Q ss_pred Ch
Q 040474 142 KL 143 (283)
Q Consensus 142 n~ 143 (283)
+.
T Consensus 1115 T~ 1116 (1144)
T KOG0792|consen 1115 TL 1116 (1144)
T ss_pred ch
Confidence 43
No 46
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=97.91 E-value=1.6e-05 Score=72.56 Aligned_cols=112 Identities=20% Similarity=0.233 Sum_probs=73.2
Q ss_pred ccHHHHHhc--CCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCC---chhHhhhHHHHHHHHHHHHHc
Q 040474 20 EDVDKLRQI--GVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFD---AFDLRMRLPAVISKLYKAINR 94 (283)
Q Consensus 20 ~~~~~L~~~--gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~---~~~~~~~~~~~~~~i~~~l~~ 94 (283)
..+..|+.+ .+.-+++++.-.- ++ +.+. ....|+.|+.+...... .......|..+++-...-.+.
T Consensus 52 dl~~~l~~~~~~vgl~iDltnt~r--yy--~~~~-----~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~ 122 (393)
T KOG2386|consen 52 DLFELLKEHNYKVGLKIDLTNTLR--YY--DKPE-----LEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKL 122 (393)
T ss_pred HHHHHHHhcCceEEEEEeccceee--ee--cccc-----ccccceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccC
Confidence 344556544 4566777764321 11 1011 12357888876654332 122222344444443332235
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC
Q 040474 95 NGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF 140 (283)
Q Consensus 95 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~ 140 (283)
.+.-|+|||.+|++|++-++++|||...+++..+|++.+..+|+..
T Consensus 123 ~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~aik~f~~~r~~g 168 (393)
T KOG2386|consen 123 DDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIKRFADARPPG 168 (393)
T ss_pred CCCEEEEeCCCcccccceeeeeeeeeccCccHHHHHHHHHHhCCCc
Confidence 6788999999999999999999999999999999999999999985
No 47
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=97.90 E-value=1.4e-05 Score=73.04 Aligned_cols=124 Identities=16% Similarity=0.225 Sum_probs=67.2
Q ss_pred HHHHHhcCCcEEEEcCcCCCCCccCCC---hHHHHHHhhhCCCeEEEEEeccCCCchhHhhhHHHHHHHHHH------HH
Q 040474 22 VDKLRQIGVKTIFCLQQDPDLEYFGVD---IIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLPAVISKLYK------AI 92 (283)
Q Consensus 22 ~~~L~~~gI~~Vv~l~~~~e~~~~~~~---~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~~~~~~~i~~------~l 92 (283)
...++.+|+-+|=|+.+..-..+ -+. ...+-+--....-..|+..-++|.+.|.-... +++|+++ .+
T Consensus 373 e~~~e~~G~~~v~~v~E~~t~dY-~LR~l~vs~~~~g~~~R~I~~yh~~tWPDHGvP~dPg~---vLnFLe~V~~rq~~l 448 (600)
T KOG0790|consen 373 EGALEEYGVMRVRNVKESDTHDY-TLRELKVSKLGNGNLEREIWHYHYLTWPDHGVPSDPGG---VLNFLEEVNHRQESL 448 (600)
T ss_pred ccchhhcCceEEEeccccccccc-eehheeeccccCCcchhhhhhhheeecccCCCcCCccH---HHHHHHHhhhhhccc
Confidence 34567788888877765432111 000 00000000000114566666777765542211 2233322 22
Q ss_pred HcCCCEEEEEcCCCCChhHHHHHH-HHH---HHhC----CCHHHHHHHHHhhCCCCCChhHHHHhHHhhh
Q 040474 93 NRNGGVTYVHCTAGLGRAPAVALA-YMF---WVLG----YKLNEAHQLLLSKRPCFPKLDAIKSATADIL 154 (283)
Q Consensus 93 ~~~~~~VlVHC~~G~~RS~~v~~a-yLm---~~~~----~~~~~A~~~v~~~r~~~pn~~~~~~~~~~~~ 154 (283)
- .-++|.|||.||+||||++++. .|| +..| ++....+++||+.|... ....||+.|+
T Consensus 449 ~-~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRSGm----VQTEaQYkFi 513 (600)
T KOG0790|consen 449 M-DAGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRSGM----VQTEAQYKFI 513 (600)
T ss_pred c-ccCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhcch----hhhHHhHHHH
Confidence 2 2469999999999999995443 333 3334 57889999999999874 2233555554
No 48
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.85 E-value=1.8e-05 Score=67.82 Aligned_cols=48 Identities=23% Similarity=0.409 Sum_probs=34.2
Q ss_pred eccCCCchhHhhhHHHHHHHHHHHHHc--CCCEEEEEcCCCCChhHHHHHHHHH
Q 040474 68 EIRDFDAFDLRMRLPAVISKLYKAINR--NGGVTYVHCTAGLGRAPAVALAYMF 119 (283)
Q Consensus 68 pi~D~~~~~~~~~~~~~~~~i~~~l~~--~~~~VlVHC~~G~~RS~~v~~ayLm 119 (283)
.+.|...++ +.+..+++...... +.++++|||.||+||||++++.-.+
T Consensus 192 nW~D~~~p~----i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~l 241 (302)
T COG5599 192 NWVDFNVPD----IRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDIL 241 (302)
T ss_pred CccccCCcC----HHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHH
Confidence 456777775 34456666555433 5789999999999999997766543
No 49
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=97.74 E-value=8.1e-05 Score=66.70 Aligned_cols=76 Identities=18% Similarity=0.284 Sum_probs=48.1
Q ss_pred EEEEeccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHH-HHHHhCCC-HHHHHHHHHhhCCC
Q 040474 64 HIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAY-MFWVLGYK-LNEAHQLLLSKRPC 139 (283)
Q Consensus 64 ~~~ipi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ay-Lm~~~~~~-~~~A~~~v~~~r~~ 139 (283)
+++.-++|.+.+.....+.+.+..+...+....++++|||.+|+|||||+++.- |.+..+-+ ..+.+..|.+.|..
T Consensus 255 f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~ 332 (374)
T KOG0791|consen 255 FHYTAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSA 332 (374)
T ss_pred EEEeeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhc
Confidence 445567788777434445555555555655567899999999999999977765 44443433 44555554444443
No 50
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=97.54 E-value=0.00099 Score=49.82 Aligned_cols=78 Identities=26% Similarity=0.433 Sum_probs=54.5
Q ss_pred ceEEEEeeCCCcceEEEeeccCCCC-ccccceeecCCCeEEEEEe-cCCc-eEEEEEEEC-CE--eeecCCcceeecCCC
Q 040474 160 ELVTFSWKGKNCTSVEISGIDIGWG-QRMPLTFDKEQGLWILKRE-LPEG-RYEYKYIVD-GE--WTCNKYELVSSPNKD 233 (283)
Q Consensus 160 ~~v~f~w~~~g~~~v~l~Gsf~~W~-~~~pl~~~~~~~~~~~~~~-l~~g-~y~ykf~vd-g~--w~~d~~~~~~~~~~~ 233 (283)
..++|+--.+++++|.|.++|++|. ...+|.+....|.|.+.+. +++| .|.|++..+ |. .+.||...... ..
T Consensus 21 ~~~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DPYa~~~~-~~- 98 (106)
T cd02855 21 SGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRRRGDSGVWELFIPGLGEGELYKYEILGADGHLPLKADPYAFYSE-LR- 98 (106)
T ss_pred CCEEEEEECCCCCEEEEEEECCCCCCcceecEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCCCceeeE-eC-
Confidence 4588999999999999999999995 4568888655899999886 6666 455554444 33 35677776553 22
Q ss_pred CCcceE
Q 040474 234 GHVNNY 239 (283)
Q Consensus 234 G~~nn~ 239 (283)
...++|
T Consensus 99 ~~~~~~ 104 (106)
T cd02855 99 PGTASI 104 (106)
T ss_pred CCCeEE
Confidence 335544
No 51
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.43 E-value=0.0007 Score=50.39 Aligned_cols=67 Identities=24% Similarity=0.244 Sum_probs=53.0
Q ss_pred ceEEEEeeCCCcceEEEeeccCCCC-----ccccceeecCCCeEEEEEe-cCCceEEEEEEECCE-----eeecCCccee
Q 040474 160 ELVTFSWKGKNCTSVEISGIDIGWG-----QRMPLTFDKEQGLWILKRE-LPEGRYEYKYIVDGE-----WTCNKYELVS 228 (283)
Q Consensus 160 ~~v~f~w~~~g~~~v~l~Gsf~~W~-----~~~pl~~~~~~~~~~~~~~-l~~g~y~ykf~vdg~-----w~~d~~~~~~ 228 (283)
..+.|+.-.+.+++|.|.. |++|. ..+||.+ ..+|.|.+.+. +.+|.+ |+|.|+|. ...||.....
T Consensus 8 ~~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~-~~~gvw~~~v~~~~~g~~-Y~y~i~~~~~~~~~~~DPyA~~~ 84 (100)
T cd02860 8 EKTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKR-GENGVWSVTLDGDLEGYY-YLYEVKVYKGETNEVVDPYAKAL 84 (100)
T ss_pred CCEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeec-CCCCEEEEEeCCccCCcE-EEEEEEEeceEEEEEcCcccEeE
Confidence 5688988888889999987 77775 4678887 36899999987 556654 88888775 6889998877
Q ss_pred e
Q 040474 229 S 229 (283)
Q Consensus 229 ~ 229 (283)
.
T Consensus 85 ~ 85 (100)
T cd02860 85 S 85 (100)
T ss_pred e
Confidence 5
No 52
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=97.43 E-value=0.00036 Score=67.74 Aligned_cols=82 Identities=26% Similarity=0.348 Sum_probs=63.6
Q ss_pred cceEEEEeeCCCcceEEEeeccCCCCc-cccceeecCCCeEEEEEe-cCCceEEEEEEECCEe-----eecCCcceeecC
Q 040474 159 KELVTFSWKGKNCTSVEISGIDIGWGQ-RMPLTFDKEQGLWILKRE-LPEGRYEYKYIVDGEW-----TCNKYELVSSPN 231 (283)
Q Consensus 159 ~~~v~f~w~~~g~~~v~l~Gsf~~W~~-~~pl~~~~~~~~~~~~~~-l~~g~y~ykf~vdg~w-----~~d~~~~~~~~~ 231 (283)
...++|+.=.+.++.|.+.|+||+|+. +.+|...++.|.|.++++ +++| +.|||.+++.. +.||-.-... .
T Consensus 35 ~~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~~~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~~~DP~a~~~~-~ 112 (628)
T COG0296 35 VSGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDRKESGIWELFVPGAPPG-TRYKYELIDPSGQLRLKADPYARRQE-V 112 (628)
T ss_pred CCceEEEEECCCCCeEEEEeecCCccceecccccCCCCceEEEeccCCCCC-CeEEEEEeCCCCceeeccCchhhccC-C
Confidence 467899988888899999999999984 566666556899999998 9999 99999997653 7888877663 4
Q ss_pred CCCCcceEEEe
Q 040474 232 KDGHVNNYVQV 242 (283)
Q Consensus 232 ~~G~~nn~i~v 242 (283)
+-++.+-|...
T Consensus 113 ~p~~aS~v~~~ 123 (628)
T COG0296 113 GPHTASQVVDL 123 (628)
T ss_pred CCCCcceecCC
Confidence 44444444443
No 53
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.41 E-value=0.00046 Score=64.48 Aligned_cols=74 Identities=22% Similarity=0.212 Sum_probs=45.4
Q ss_pred EEEEeccCCCchhHhhhHHHHHHHHH---HHHHcCCCEEEEEcCCCCChhHHHHHHH-HHHH--h---CCCHHHHHHHHH
Q 040474 64 HIRAEIRDFDAFDLRMRLPAVISKLY---KAINRNGGVTYVHCTAGLGRAPAVALAY-MFWV--L---GYKLNEAHQLLL 134 (283)
Q Consensus 64 ~~~ipi~D~~~~~~~~~~~~~~~~i~---~~l~~~~~~VlVHC~~G~~RS~~v~~ay-Lm~~--~---~~~~~~A~~~v~ 134 (283)
|+...++|...++. ...++.++. ...+...++++|||.+|+||||++++.- .+.. . .....+.+..+|
T Consensus 267 ~~~~~WPd~~~p~~---~~~~l~~~~~~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR 343 (415)
T KOG0789|consen 267 YHYINWPDHGAPDS---VKSILPLLRQSVLELRPKQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIR 343 (415)
T ss_pred EeeCCCccccCCcc---hHHHHHHHHhhhhhhcCCCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 33344556655442 233444443 2222235799999999999999988655 2222 2 234778888888
Q ss_pred hhCCCC
Q 040474 135 SKRPCF 140 (283)
Q Consensus 135 ~~r~~~ 140 (283)
..|+..
T Consensus 344 ~qR~~~ 349 (415)
T KOG0789|consen 344 YQRPGA 349 (415)
T ss_pred HHhhhc
Confidence 888864
No 54
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.39 E-value=0.0012 Score=50.92 Aligned_cols=46 Identities=30% Similarity=0.657 Sum_probs=38.2
Q ss_pred cceEEEeec---cCCCC--ccccceeec-CCCeEEEEEecCCc-eEEEEEEEC
Q 040474 171 CTSVEISGI---DIGWG--QRMPLTFDK-EQGLWILKRELPEG-RYEYKYIVD 216 (283)
Q Consensus 171 ~~~v~l~Gs---f~~W~--~~~pl~~~~-~~~~~~~~~~l~~g-~y~ykf~vd 216 (283)
.+++.|+|+ +.+|+ ...+|.+.. ..+.|.+.+.||++ .++|||++.
T Consensus 15 ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~~~~veYkY~~~ 67 (120)
T cd05814 15 GEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPRGVDFQYRYFVA 67 (120)
T ss_pred CCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECCCCeEEEEEEEE
Confidence 489999998 88998 556887752 45789999999998 799999993
No 55
>PRK12568 glycogen branching enzyme; Provisional
Probab=97.08 E-value=0.0027 Score=63.09 Aligned_cols=77 Identities=23% Similarity=0.367 Sum_probs=58.6
Q ss_pred ceEEEEeeCCCcceEEEeeccCCCC-ccccceeecCCCeEEEEEe-cCCceEEEEEEE---CCEe--eecCCcceeecCC
Q 040474 160 ELVTFSWKGKNCTSVEISGIDIGWG-QRMPLTFDKEQGLWILKRE-LPEGRYEYKYIV---DGEW--TCNKYELVSSPNK 232 (283)
Q Consensus 160 ~~v~f~w~~~g~~~v~l~Gsf~~W~-~~~pl~~~~~~~~~~~~~~-l~~g~y~ykf~v---dg~w--~~d~~~~~~~~~~ 232 (283)
..++|+--.+.+++|.|+|+|++|+ ...||.+. .+|.|++.++ +.+|. .|||.| ||.+ ..||.+-..+.+
T Consensus 138 ~Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~-~~GVWelfipg~~~G~-~YKYeI~~~~G~~~~k~DPYA~~~e~~- 214 (730)
T PRK12568 138 PGVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQR-IGGFWELFLPRVEAGA-RYKYAITAADGRVLLKADPVARQTELP- 214 (730)
T ss_pred CcEEEEEECCCCCEEEEEEecCCCCccceecccC-CCCEEEEEECCCCCCC-EEEEEEEcCCCeEeecCCCcceEeecC-
Confidence 4678988888889999999999998 45788876 6899999996 77773 567777 7876 468888876532
Q ss_pred CCCcceEE
Q 040474 233 DGHVNNYV 240 (283)
Q Consensus 233 ~G~~nn~i 240 (283)
+...++|
T Consensus 215 -p~~asvV 221 (730)
T PRK12568 215 -PATASVV 221 (730)
T ss_pred -CCCCeEE
Confidence 3444544
No 56
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.98 E-value=0.0058 Score=45.67 Aligned_cols=56 Identities=29% Similarity=0.407 Sum_probs=42.9
Q ss_pred ceEEEEeeCCCcceEEEeeccCCCC--ccccceeecCCCeEEEEEe-cCCceEEEEEEECCE
Q 040474 160 ELVTFSWKGKNCTSVEISGIDIGWG--QRMPLTFDKEQGLWILKRE-LPEGRYEYKYIVDGE 218 (283)
Q Consensus 160 ~~v~f~w~~~g~~~v~l~Gsf~~W~--~~~pl~~~~~~~~~~~~~~-l~~g~y~ykf~vdg~ 218 (283)
..+.|+.-.+.+++|.|.. ++++. ..++|.+. .+|.|.+.+. +.+|. .|+|.|||.
T Consensus 9 ~g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~-~~GvW~~~v~~~~~g~-~Y~y~i~g~ 67 (103)
T cd02856 9 EGCNFAVHSENATRIELCL-FDEDGSETRLPLTEE-YGGVWHGFLPGIKAGQ-RYGFRVHGP 67 (103)
T ss_pred CCeEEEEECCCCCEEEEEE-EeCCCCEEEEEcccc-cCCEEEEEECCCCCCC-EEEEEECCc
Confidence 4578887777789999988 44553 45788765 5899999985 66665 799999993
No 57
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=96.90 E-value=0.0041 Score=45.84 Aligned_cols=55 Identities=33% Similarity=0.651 Sum_probs=41.7
Q ss_pred eEEEEeeC--CCcceEEEeeccC---CCC--ccccceeec---CCCeEEEEEecCCc-eEEEEEEE
Q 040474 161 LVTFSWKG--KNCTSVEISGIDI---GWG--QRMPLTFDK---EQGLWILKRELPEG-RYEYKYIV 215 (283)
Q Consensus 161 ~v~f~w~~--~g~~~v~l~Gsf~---~W~--~~~pl~~~~---~~~~~~~~~~l~~g-~y~ykf~v 215 (283)
.|+|.-.. ...+.|.|+||.. +|+ ..++|.... ....|++++.||.| .++|||++
T Consensus 3 ~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 3 SVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 35555422 2239999999885 798 578888753 34789999999998 59999999
No 58
>PRK14705 glycogen branching enzyme; Provisional
Probab=96.85 E-value=0.0063 Score=63.71 Aligned_cols=69 Identities=22% Similarity=0.428 Sum_probs=53.9
Q ss_pred ceEEEEeeCCCcceEEEeeccCCCC-ccccceeecCCCeEEEEEe-cCCceEEEEEEEC---CEe--eecCCcceee
Q 040474 160 ELVTFSWKGKNCTSVEISGIDIGWG-QRMPLTFDKEQGLWILKRE-LPEGRYEYKYIVD---GEW--TCNKYELVSS 229 (283)
Q Consensus 160 ~~v~f~w~~~g~~~v~l~Gsf~~W~-~~~pl~~~~~~~~~~~~~~-l~~g~y~ykf~vd---g~w--~~d~~~~~~~ 229 (283)
..+.|.--.+.++.|.|+|+||+|+ ...+|.+....|.|.+.++ +.+|. .|||.|+ |.| ..||..-..+
T Consensus 638 ~Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~~~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~k~DPyA~~~e 713 (1224)
T PRK14705 638 DGVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSLGSSGVWELFIPGVVAGA-CYKFEILTKAGQWVEKADPLAFGTE 713 (1224)
T ss_pred CeEEEEEECCCCCEEEEEEEecCCCCCcccceECCCCCEEEEEECCCCCCC-EEEEEEEcCCCcEEecCCccccccc
Confidence 4678988888899999999999998 4568887556799999886 88885 5778784 555 5677766554
No 59
>PRK12313 glycogen branching enzyme; Provisional
Probab=96.85 E-value=0.0058 Score=60.47 Aligned_cols=68 Identities=24% Similarity=0.311 Sum_probs=53.8
Q ss_pred eEEEEeeCCCcceEEEeeccCCCC-ccccceeecCCCeEEEEEe-cCCc-eEEEEEEE-CCEe--eecCCcceee
Q 040474 161 LVTFSWKGKNCTSVEISGIDIGWG-QRMPLTFDKEQGLWILKRE-LPEG-RYEYKYIV-DGEW--TCNKYELVSS 229 (283)
Q Consensus 161 ~v~f~w~~~g~~~v~l~Gsf~~W~-~~~pl~~~~~~~~~~~~~~-l~~g-~y~ykf~v-dg~w--~~d~~~~~~~ 229 (283)
.++|+--.+.+++|.|+|+|++|+ ...||.+. .+|.|.+.+. +.+| .|.|++.. ||.| ..||......
T Consensus 39 gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~-~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPya~~~~ 112 (633)
T PRK12313 39 GTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRR-ESGVWEGFIPGAKEGQLYKYHISRQDGYQVEKIDPFAFYFE 112 (633)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCccccccccc-CCCEEEEEeCCCCCCCEEEEEEECCCCeEEecCCCceEEEe
Confidence 789999999999999999999998 45788876 6799999997 4555 57777654 5775 5688777664
No 60
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=96.82 E-value=0.0045 Score=45.41 Aligned_cols=43 Identities=30% Similarity=0.526 Sum_probs=35.8
Q ss_pred ceEEEeec---cCCCC--ccccceeecCCCeEEEEEecCCc-eEEEEEEE
Q 040474 172 TSVEISGI---DIGWG--QRMPLTFDKEQGLWILKRELPEG-RYEYKYIV 215 (283)
Q Consensus 172 ~~v~l~Gs---f~~W~--~~~pl~~~~~~~~~~~~~~l~~g-~y~ykf~v 215 (283)
+++.|+|+ +++|+ ..++|... +++.|.+++.||++ .++|||++
T Consensus 15 e~l~v~G~~~~lG~W~~~~a~~l~~~-~~~~W~~~v~l~~~~~~eYKy~~ 63 (95)
T cd05808 15 QNVYVVGNVPELGNWSPANAVALSAA-TYPVWSGTVDLPAGTAIEYKYIK 63 (95)
T ss_pred CEEEEEeCcHHhCCCChhhCccCCCC-CCCCEEEEEEeCCCCeEEEEEEE
Confidence 89999995 78998 34688765 46789999999987 69999997
No 61
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.79 E-value=0.0063 Score=46.73 Aligned_cols=58 Identities=29% Similarity=0.300 Sum_probs=43.7
Q ss_pred ceEEEEeeCCCcceEEEeeccCCCC-----ccccceeec--CCCeEEEEEe-cCCceEEEEEEECCEe
Q 040474 160 ELVTFSWKGKNCTSVEISGIDIGWG-----QRMPLTFDK--EQGLWILKRE-LPEGRYEYKYIVDGEW 219 (283)
Q Consensus 160 ~~v~f~w~~~g~~~v~l~Gsf~~W~-----~~~pl~~~~--~~~~~~~~~~-l~~g~y~ykf~vdg~w 219 (283)
..+.|+.-.+.+++|.|.. |++|+ ..++|.+.. .+|.|.+.+. +.+|. .|+|.|+|.|
T Consensus 7 ~g~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~ 72 (119)
T cd02852 7 GGVNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQ-LYGYRVDGPF 72 (119)
T ss_pred CCEEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCCC-EEEEEECCCC
Confidence 4578887788789999998 77765 245676542 2689999886 77886 6999999854
No 62
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.79 E-value=0.0083 Score=60.30 Aligned_cols=70 Identities=29% Similarity=0.534 Sum_probs=55.0
Q ss_pred ceEEEEeeCCCcceEEEeeccCCCCc-cccceeecCCCeEEEEEe-cCCc-eEEEEEEEC-CEe--eecCCcceee
Q 040474 160 ELVTFSWKGKNCTSVEISGIDIGWGQ-RMPLTFDKEQGLWILKRE-LPEG-RYEYKYIVD-GEW--TCNKYELVSS 229 (283)
Q Consensus 160 ~~v~f~w~~~g~~~v~l~Gsf~~W~~-~~pl~~~~~~~~~~~~~~-l~~g-~y~ykf~vd-g~w--~~d~~~~~~~ 229 (283)
..++|+--.+.+++|.|+|+|++|+. ..+|.+..++|.|.+.+. +++| .|.|++..+ |.+ ..||..-...
T Consensus 131 ~gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPYa~~~~ 206 (726)
T PRK05402 131 SGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLRGESGVWELFIPGLGEGELYKFEILTADGELLLKADPYAFAAE 206 (726)
T ss_pred CcEEEEEECCCCCEEEEEEEcCCCCCccccceEcCCCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCCCceEEEe
Confidence 46899999999999999999999973 478988656899999886 6777 677777665 454 5677766654
No 63
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.69 E-value=0.0028 Score=61.26 Aligned_cols=78 Identities=21% Similarity=0.162 Sum_probs=52.3
Q ss_pred EEEEEeccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHH-HHH-----hCCCHHHHHHHHHhh
Q 040474 63 QHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYM-FWV-----LGYKLNEAHQLLLSK 136 (283)
Q Consensus 63 ~~~~ipi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayL-m~~-----~~~~~~~A~~~v~~~ 136 (283)
.++.+.+++.+.+.....+.+.-+.+.+..+-+..+|+|||..|-||||+-++.=+ +.+ ..++....++.+|..
T Consensus 894 QFHfLSWp~egvPasarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQ 973 (1004)
T KOG0793|consen 894 QFHFLSWPDEGVPASARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQ 973 (1004)
T ss_pred eeeeecccccCCccchHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhc
Confidence 35566778887777665554444445555444456899999999999998433322 211 235777789999999
Q ss_pred CCCC
Q 040474 137 RPCF 140 (283)
Q Consensus 137 r~~~ 140 (283)
|+..
T Consensus 974 R~Gm 977 (1004)
T KOG0793|consen 974 RPGM 977 (1004)
T ss_pred CCcc
Confidence 9974
No 64
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=96.65 E-value=0.015 Score=43.22 Aligned_cols=56 Identities=27% Similarity=0.358 Sum_probs=39.3
Q ss_pred ceEEEEeeCC---CcceEEEee---ccCCCCcc-ccceee--cCCCeEEEEEecCCc-eEEEEEEE
Q 040474 160 ELVTFSWKGK---NCTSVEISG---IDIGWGQR-MPLTFD--KEQGLWILKRELPEG-RYEYKYIV 215 (283)
Q Consensus 160 ~~v~f~w~~~---g~~~v~l~G---sf~~W~~~-~pl~~~--~~~~~~~~~~~l~~g-~y~ykf~v 215 (283)
.+|+|.-... ..+++.|+| .+.+|+.. .++... ...+.|.+.++||+| .++|||++
T Consensus 3 v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~~veyKyv~ 68 (99)
T cd05809 3 VPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAGRNIEFKAIK 68 (99)
T ss_pred eEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCCCcEEEEEEE
Confidence 4667765331 238999999 56789742 233332 235789999999999 59999999
No 65
>PRK14706 glycogen branching enzyme; Provisional
Probab=96.60 E-value=0.0087 Score=59.10 Aligned_cols=76 Identities=18% Similarity=0.257 Sum_probs=57.1
Q ss_pred eEEEEeeCCCcceEEEeeccCCCCc-cccceeecCCCeEEEEEe-cCCceEEEEEEECC---Ee--eecCCcceeecCCC
Q 040474 161 LVTFSWKGKNCTSVEISGIDIGWGQ-RMPLTFDKEQGLWILKRE-LPEGRYEYKYIVDG---EW--TCNKYELVSSPNKD 233 (283)
Q Consensus 161 ~v~f~w~~~g~~~v~l~Gsf~~W~~-~~pl~~~~~~~~~~~~~~-l~~g~y~ykf~vdg---~w--~~d~~~~~~~~~~~ 233 (283)
.++|+--.+.+++|.|+|+|++|+. ..||.+. +.|.|.+.++ +.+| ..|||.|++ .+ +.||.+-....+
T Consensus 39 Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~-~~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~DPYa~~~~~~-- 114 (639)
T PRK14706 39 GVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRL-DFGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKMDPYGSFFEVR-- 114 (639)
T ss_pred cEEEEEECCCCCEEEEEEecCCccccccccccc-CCCEEEEEECCCCCC-CEEEEEEECCCCCEEeccCcceEEEecC--
Confidence 5899988999999999999999984 4788876 5799999986 4555 468888864 44 678887766433
Q ss_pred CCcceEE
Q 040474 234 GHVNNYV 240 (283)
Q Consensus 234 G~~nn~i 240 (283)
+...++|
T Consensus 115 ~~~~svv 121 (639)
T PRK14706 115 PNTASII 121 (639)
T ss_pred CCCceEE
Confidence 3445554
No 66
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.54 E-value=0.018 Score=41.38 Aligned_cols=64 Identities=17% Similarity=0.198 Sum_probs=48.4
Q ss_pred ceEEEEeeCCCcceEEEeeccCCCCccccceeecCCCeEEEEEecCCceEEEEEEEC-CEeeecCCccee
Q 040474 160 ELVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVD-GEWTCNKYELVS 228 (283)
Q Consensus 160 ~~v~f~w~~~g~~~v~l~Gsf~~W~~~~pl~~~~~~~~~~~~~~l~~g~y~ykf~vd-g~w~~d~~~~~~ 228 (283)
..++|..-.+.+++|.|.... |. .++|.+. ++|.|.+.+...+|. .|+|.|+ |..+.||.+...
T Consensus 8 ~~~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~-~~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~~ 72 (85)
T cd02853 8 GGTRFRLWAPDAKRVTLRLDD--GE-EIPMQRD-GDGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRFQ 72 (85)
T ss_pred CCEEEEEeCCCCCEEEEEecC--CC-cccCccC-CCcEEEEEeCCCCCC-eEEEEECCCcCCCCCccccC
Confidence 568899888889999999643 43 5788875 579999998733775 4666666 567889998865
No 67
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=96.46 E-value=0.048 Score=40.40 Aligned_cols=43 Identities=26% Similarity=0.553 Sum_probs=35.2
Q ss_pred ceEEEeecc---CCCC--ccccceeecCCCeEEEEEecCCc--eEEEEEEE
Q 040474 172 TSVEISGID---IGWG--QRMPLTFDKEQGLWILKRELPEG--RYEYKYIV 215 (283)
Q Consensus 172 ~~v~l~Gsf---~~W~--~~~pl~~~~~~~~~~~~~~l~~g--~y~ykf~v 215 (283)
+++.++|+. .+|+ ..++|... ....|.+.+.+|++ .++|||++
T Consensus 15 e~v~i~Gs~~~LG~W~~~~a~~l~~~-~~~~W~~~v~~p~~~~~ieYKyvi 64 (99)
T cd05816 15 QSVYVTGSSPELGNWDPQKALKLSDV-GFPIWEADIDISKDSFPFEYKYII 64 (99)
T ss_pred CEEEEEEChHHhCCCCccccccCCCC-CCCcEEEEEEeCCCCccEEEEEEE
Confidence 899999975 6798 45688765 46789999999886 59999998
No 68
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=96.42 E-value=0.014 Score=56.64 Aligned_cols=73 Identities=15% Similarity=0.081 Sum_probs=54.6
Q ss_pred EEEEeeCCCcceEEEeeccCCCCccccceeecCCCeEEEEEe-cCCceEEEEEEECC-EeeecCCcceeecCCCCCcceE
Q 040474 162 VTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRE-LPEGRYEYKYIVDG-EWTCNKYELVSSPNKDGHVNNY 239 (283)
Q Consensus 162 v~f~w~~~g~~~v~l~Gsf~~W~~~~pl~~~~~~~~~~~~~~-l~~g~y~ykf~vdg-~w~~d~~~~~~~~~~~G~~nn~ 239 (283)
++|+.-.+.+++|.|... + ..+||.+. ++|.|+++++ +.+| +.|+|.||| ..+.||.+.....+ .+..++
T Consensus 1 v~FrlwAP~A~~V~L~l~---~-~~~~m~k~-~~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~~~~--~~~~S~ 72 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN---G-ALHAMQRL-GDGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQPDG--VHGPSQ 72 (542)
T ss_pred CEEEEECCCCCEEEEEeC---C-CEEeCeEC-CCCEEEEEECCCCCC-CEEEEEEeeeEEecCccccccccC--CCCCeE
Confidence 467777788899999873 2 36899886 5799999997 7788 789999999 67899999876322 233455
Q ss_pred EEe
Q 040474 240 VQV 242 (283)
Q Consensus 240 i~v 242 (283)
|..
T Consensus 73 V~d 75 (542)
T TIGR02402 73 VVD 75 (542)
T ss_pred Eec
Confidence 544
No 69
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=96.34 E-value=0.034 Score=55.64 Aligned_cols=70 Identities=17% Similarity=0.266 Sum_probs=51.5
Q ss_pred ceEEEEeeCCCcceEEEeeccCCCC-ccccceeecCCCeEEEEEec-------CCceEEEEEEEC---CEe--eecCCcc
Q 040474 160 ELVTFSWKGKNCTSVEISGIDIGWG-QRMPLTFDKEQGLWILKREL-------PEGRYEYKYIVD---GEW--TCNKYEL 226 (283)
Q Consensus 160 ~~v~f~w~~~g~~~v~l~Gsf~~W~-~~~pl~~~~~~~~~~~~~~l-------~~g~y~ykf~vd---g~w--~~d~~~~ 226 (283)
..++|+-=.+.++.|.|+|+||+|+ ...||.+. +.|.|++.++- +.| ..|||.|. |.+ +.||-..
T Consensus 114 ~g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~-~~GvWe~~ip~~~g~~~~~~G-~~Yky~i~~~~g~~~~r~dpya~ 191 (758)
T PLN02447 114 GGITYREWAPGAKAAALIGDFNNWNPNAHWMTKN-EFGVWEIFLPDADGSPAIPHG-SRVKIRMETPDGRWVDRIPAWIK 191 (758)
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCCCccCceeC-CCCEEEEEECCccccccCCCC-CEEEEEEEeCCCcEEeecCchHh
Confidence 5788988888899999999999998 35788875 58999998863 344 36666664 544 5677665
Q ss_pred eeecC
Q 040474 227 VSSPN 231 (283)
Q Consensus 227 ~~~~~ 231 (283)
..+.+
T Consensus 192 ~~~~~ 196 (758)
T PLN02447 192 YAVQA 196 (758)
T ss_pred eeecc
Confidence 54444
No 70
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=96.26 E-value=0.01 Score=46.87 Aligned_cols=76 Identities=26% Similarity=0.223 Sum_probs=42.7
Q ss_pred eEEEEEeccCCCchhHhhhHHHHHHHHHHHHHc--CCCEEEEEcCCCCCh----hHHHHHHHHHHHhCCCHHHHHHHHHh
Q 040474 62 IQHIRAEIRDFDAFDLRMRLPAVISKLYKAINR--NGGVTYVHCTAGLGR----APAVALAYMFWVLGYKLNEAHQLLLS 135 (283)
Q Consensus 62 i~~~~ipi~D~~~~~~~~~~~~~~~~i~~~l~~--~~~~VlVHC~~G~~R----S~~v~~ayLm~~~~~~~~~A~~~v~~ 135 (283)
+.|..+ ..|.++.++.. +-..+..+++.+++ ..++.+|||.+.-.+ ++.++.||+|...+|++++|++-+.+
T Consensus 32 l~Y~~F-~~DFGPlnL~~-lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~ 109 (141)
T PF14671_consen 32 LVYENF-YADFGPLNLAQ-LYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLAS 109 (141)
T ss_dssp S----S-SS------HHH-HHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTT
T ss_pred EEEecc-cCcCCCccHHH-HHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 344433 36888888774 44456667777754 246688888775433 46699999999999999999999988
Q ss_pred hCCC
Q 040474 136 KRPC 139 (283)
Q Consensus 136 ~r~~ 139 (283)
.-|.
T Consensus 110 ~~p~ 113 (141)
T PF14671_consen 110 IQPP 113 (141)
T ss_dssp TT--
T ss_pred cCCC
Confidence 7644
No 71
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase. The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.
Probab=96.11 E-value=0.068 Score=41.30 Aligned_cols=85 Identities=24% Similarity=0.350 Sum_probs=58.8
Q ss_pred ceEEEEeeC---CCcceEEEeeccCCCCc-----cccceeecCCCeEEEEEecCCc-eEEEEEEECCE------------
Q 040474 160 ELVTFSWKG---KNCTSVEISGIDIGWGQ-----RMPLTFDKEQGLWILKRELPEG-RYEYKYIVDGE------------ 218 (283)
Q Consensus 160 ~~v~f~w~~---~g~~~v~l~Gsf~~W~~-----~~pl~~~~~~~~~~~~~~l~~g-~y~ykf~vdg~------------ 218 (283)
..|+|.|.. .....+.|.++.++... ...|.+..+...|..++.||.+ +=.|.|+.+-.
T Consensus 2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl~gTDVW~~t~~lp~d~rgSY~~~p~~~~~~~~~r~~~r~ 81 (122)
T PF11806_consen 2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRLPGTDVWYWTYRLPADWRGSYSFIPDVPDARGAQREWWRA 81 (122)
T ss_dssp -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE-TTSSEEEEEEEEETT-EEEEEEEEES-T-HHHHHHHHHH
T ss_pred cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeCCCCceEEEEEEECcccEEEEEEEecCcccchhHHHHHHH
Confidence 479999992 33488999999999842 5678888777899999999998 79999997533
Q ss_pred ----eeecCCcceeecCCC---CCcceEEEecc
Q 040474 219 ----WTCNKYELVSSPNKD---GHVNNYVQVDD 244 (283)
Q Consensus 219 ----w~~d~~~~~~~~~~~---G~~nn~i~v~~ 244 (283)
-+.||-||....+.. |..-++++..+
T Consensus 82 ~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~Lp~ 114 (122)
T PF11806_consen 82 ILAQAQADPLNPRPWPNGAQDRGNAASVLELPD 114 (122)
T ss_dssp HGGG-B--TTSSSEEE-TT---SSEEEEEE-TT
T ss_pred HHhccCCCCCCCCCCCCCccccccccCceeCCC
Confidence 468999998866655 88899998876
No 72
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.11 E-value=0.0071 Score=61.49 Aligned_cols=45 Identities=20% Similarity=0.366 Sum_probs=28.8
Q ss_pred eccCCCchhHhhhHHHHHHHHHHHHH-c--CCCEEEEEcCCCCChhHHHHH
Q 040474 68 EIRDFDAFDLRMRLPAVISKLYKAIN-R--NGGVTYVHCTAGLGRAPAVAL 115 (283)
Q Consensus 68 pi~D~~~~~~~~~~~~~~~~i~~~l~-~--~~~~VlVHC~~G~~RS~~v~~ 115 (283)
.++|...|... -..+.|+.+... . ..|+++|||.||.||||+.++
T Consensus 702 ~Wpd~gvPe~~---t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~ 749 (1087)
T KOG4228|consen 702 AWPDHGVPETP---TGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIV 749 (1087)
T ss_pred cCCCCCCcccc---hHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEE
Confidence 46777666533 223455444321 1 248999999999999999544
No 73
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=95.94 E-value=0.11 Score=38.74 Aligned_cols=55 Identities=20% Similarity=0.382 Sum_probs=40.8
Q ss_pred ceEEEEeeCC----CcceEEEeecc---CCCCccc-----cceeecCCCeEEEEEecCCc-eEEEEEEE
Q 040474 160 ELVTFSWKGK----NCTSVEISGID---IGWGQRM-----PLTFDKEQGLWILKRELPEG-RYEYKYIV 215 (283)
Q Consensus 160 ~~v~f~w~~~----g~~~v~l~Gsf---~~W~~~~-----pl~~~~~~~~~~~~~~l~~g-~y~ykf~v 215 (283)
.+|+|.-+.. -.+++.++|+. .+|+... +|... ....|.+.++||.| ..+|||++
T Consensus 3 ~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~-~~~~W~~~~~lp~~~~veyK~v~ 70 (103)
T cd05820 3 IPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCP-NWPDWFVVASVPAGTYIEFKFLK 70 (103)
T ss_pred ccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccC-CCCCEEEEEEcCCCCcEEEEEEE
Confidence 5788887632 23899999965 5798422 66543 45679999999999 59999999
No 74
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=95.94 E-value=0.047 Score=53.85 Aligned_cols=69 Identities=25% Similarity=0.445 Sum_probs=54.0
Q ss_pred ceEEEEeeCCCcceEEEeeccCCCC-ccccceeecCCCeEEEEEe-cCCceEEEEEEEC---CE--eeecCCcceee
Q 040474 160 ELVTFSWKGKNCTSVEISGIDIGWG-QRMPLTFDKEQGLWILKRE-LPEGRYEYKYIVD---GE--WTCNKYELVSS 229 (283)
Q Consensus 160 ~~v~f~w~~~g~~~v~l~Gsf~~W~-~~~pl~~~~~~~~~~~~~~-l~~g~y~ykf~vd---g~--w~~d~~~~~~~ 229 (283)
..++|+--.+.+++|.|+|+|++|. ...||.+..+.|.|.+.++ +.+|. .|+|.|+ |. .+.||..-...
T Consensus 28 ~g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~DPYA~~~~ 103 (613)
T TIGR01515 28 SGTRFCVWAPNAREVRVAGDFNYWDGREHPMRRRNDNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKADPYAFYAE 103 (613)
T ss_pred CcEEEEEECCCCCEEEEEEecCCCCCceecceEecCCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeCCCCEeeec
Confidence 4688998899999999999999997 3468887655799999886 46665 5777774 55 47888887664
No 75
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=95.89 E-value=0.12 Score=37.75 Aligned_cols=43 Identities=28% Similarity=0.653 Sum_probs=35.9
Q ss_pred cceEEEeecc---CCCCccccceeecCCCeEEEEEecCCc-eEEEEEEE
Q 040474 171 CTSVEISGID---IGWGQRMPLTFDKEQGLWILKRELPEG-RYEYKYIV 215 (283)
Q Consensus 171 ~~~v~l~Gsf---~~W~~~~pl~~~~~~~~~~~~~~l~~g-~y~ykf~v 215 (283)
.+++.++|+. .+|+...+|... .+.|.+.+++|++ .++|||++
T Consensus 15 Gq~l~v~G~~~~LG~W~~~~~l~~~--~~~W~~~~~l~~~~~ieyKy~~ 61 (92)
T cd05818 15 GEHVAILGSTKELGSWKKKVPMNWT--ENGWVCDLELDGGELVEYKFVI 61 (92)
T ss_pred CCEEEEEeChHHHCCCCCCCccccC--CCCEEEEEEeCCCCcEEEEEEE
Confidence 3899999976 689977778765 4569999999988 69999999
No 76
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=95.84 E-value=0.035 Score=40.78 Aligned_cols=53 Identities=26% Similarity=0.563 Sum_probs=39.6
Q ss_pred EEEEeeCC---CcceEEEeecc---CCCCccccceeecCCCeEEEEEecCCce-EEEEEEE
Q 040474 162 VTFSWKGK---NCTSVEISGID---IGWGQRMPLTFDKEQGLWILKRELPEGR-YEYKYIV 215 (283)
Q Consensus 162 v~f~w~~~---g~~~v~l~Gsf---~~W~~~~pl~~~~~~~~~~~~~~l~~g~-y~ykf~v 215 (283)
++|.-... +.+.+.|+|+- .+|+...+|... +.+.|.+++.||.+. ++|||++
T Consensus 3 v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~-~~~~W~~~v~lp~~~~ieYky~~ 62 (95)
T cd05813 3 VTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYV-KDGFWSASVSLPVDTHVEWKFVL 62 (95)
T ss_pred EEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCC-CCCCEEEEEEecCCCcEEEEEEE
Confidence 44544332 33778899965 579877888765 467899999999985 9999998
No 77
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=95.57 E-value=0.066 Score=39.77 Aligned_cols=43 Identities=35% Similarity=0.651 Sum_probs=35.5
Q ss_pred ceEEEeec---cCCCC--ccccceeecCCCeEEEEEecCCc-eEEEEEEE
Q 040474 172 TSVEISGI---DIGWG--QRMPLTFDKEQGLWILKRELPEG-RYEYKYIV 215 (283)
Q Consensus 172 ~~v~l~Gs---f~~W~--~~~pl~~~~~~~~~~~~~~l~~g-~y~ykf~v 215 (283)
+.+.|+|+ ..+|+ ..++|... ++..|.+++.+|++ .++|||++
T Consensus 14 e~l~v~Gs~~~LG~W~~~~a~~m~~~-~~~~W~~~v~lp~~~~veYKY~i 62 (100)
T cd05817 14 EAVYISGNCNQLGNWNPSKAKRMQWN-EGDLWTVDVGIPESVYIEYKYFV 62 (100)
T ss_pred CEEEEEeCcHHHCCCCccccCcccCC-CCCCEEEEEEECCCCcEEEEEEE
Confidence 89999997 56798 45678765 46689999999988 59999998
No 78
>PRK05402 glycogen branching enzyme; Provisional
Probab=95.45 E-value=0.044 Score=55.16 Aligned_cols=64 Identities=14% Similarity=-0.033 Sum_probs=49.8
Q ss_pred eEEEEeeCCCcceEEEeeccCCCCccccceeecCCCeEEEEEecCCceEEEEEEE--CCEe--eecCCcc
Q 040474 161 LVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIV--DGEW--TCNKYEL 226 (283)
Q Consensus 161 ~v~f~w~~~g~~~v~l~Gsf~~W~~~~pl~~~~~~~~~~~~~~l~~g~y~ykf~v--dg~w--~~d~~~~ 226 (283)
-++|+--.+.+++|.|+|+|++ ....||.+..+.|.|.+.+++..|.. |||.| ||++ ..||..-
T Consensus 29 g~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~~~~G~w~~~ip~~~g~~-YKy~i~~~g~~~~k~DPyaf 96 (726)
T PRK05402 29 GLVVRALLPGAEEVWVILPGGG-RKLAELERLHPRGLFAGVLPRKGPFD-YRLRVTWGGGEQLIDDPYRF 96 (726)
T ss_pred cEEEEEECCCCeEEEEEeecCC-CccccceEcCCCceEEEEecCCCCCC-eEEEEEeCCceeEecccccc
Confidence 6889999999999999999997 45679998667899999999777742 44545 8865 5566653
No 79
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=95.21 E-value=0.11 Score=37.96 Aligned_cols=44 Identities=32% Similarity=0.601 Sum_probs=35.8
Q ss_pred ceEEEeecc---CCCC--ccccceeecCCCeEEEEEecCC--c-eEEEEEEE
Q 040474 172 TSVEISGID---IGWG--QRMPLTFDKEQGLWILKRELPE--G-RYEYKYIV 215 (283)
Q Consensus 172 ~~v~l~Gsf---~~W~--~~~pl~~~~~~~~~~~~~~l~~--g-~y~ykf~v 215 (283)
+.+.|+|+. .+|+ ..++|...+.++.|.+++.+|+ | .++|||++
T Consensus 14 e~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~W~~~v~~~~~~~~~~~yKy~~ 65 (96)
T cd05467 14 QSVYVVGSHPELGNWDPAKALRLNTSNSYPLWTGEIPLPAPEGQVIEYKYVI 65 (96)
T ss_pred CEEEEEeCcHHhCCcChhcCccccCCCCCCcEEEEEEecCCCCCeEEEEEEE
Confidence 899999976 4787 5578876532678999999998 7 69999998
No 80
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=95.18 E-value=0.096 Score=49.12 Aligned_cols=89 Identities=21% Similarity=0.203 Sum_probs=64.9
Q ss_pred ccceEEEEeeCCCc-------ceEEEeec--cCC--CCccccceeecCCCeEEEEEecCCc-eEEEEEEEC---C-----
Q 040474 158 RKELVTFSWKGKNC-------TSVEISGI--DIG--WGQRMPLTFDKEQGLWILKRELPEG-RYEYKYIVD---G----- 217 (283)
Q Consensus 158 ~~~~v~f~w~~~g~-------~~v~l~Gs--f~~--W~~~~pl~~~~~~~~~~~~~~l~~g-~y~ykf~vd---g----- 217 (283)
....|+|-|..+.+ +.|++-++ .+. +.++.+|.+-.+..+|..++.||.. +-.|+|+++ .
T Consensus 37 ~~~~vTFlwr~~~~~~~~~~~~~v~~~~n~~tdh~~~~~~~~l~rl~~tDvW~~~~~~p~~~r~sY~~~~~~~~~~~~~~ 116 (411)
T PRK10439 37 GMVRVTFWWRDPQGDEEHSTIRRVWIYINGVTDHHQNSQPQSLQRIAGTDVWQWSTELSANWRGSYCFIPTERDDIFSAF 116 (411)
T ss_pred CcEEEEEEeeCCCCCcccccceeEEEeCCCCCCcCccCCcchhhccCCCceEEEEEEECcccEEEEEEEecccccccccc
Confidence 34799999998543 24776432 222 3344578888777899999999998 799999993 1
Q ss_pred --------------------EeeecCCcceeecCCCCCcceEEEeccCC
Q 040474 218 --------------------EWTCNKYELVSSPNKDGHVNNYVQVDDAP 246 (283)
Q Consensus 218 --------------------~w~~d~~~~~~~~~~~G~~nn~i~v~~~~ 246 (283)
.-+.||.||....++.|+..|++++.+.+
T Consensus 117 ~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~lp~a~ 165 (411)
T PRK10439 117 APAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEMPQAP 165 (411)
T ss_pred ccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccCCCCC
Confidence 12489999988767777777999998743
No 81
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=94.98 E-value=0.36 Score=36.02 Aligned_cols=54 Identities=30% Similarity=0.580 Sum_probs=38.8
Q ss_pred eEEEEee---CCCcceEEEeecc---CCCC--ccccceee---cCCCeEEEEEecCCc-eEEEEEEE
Q 040474 161 LVTFSWK---GKNCTSVEISGID---IGWG--QRMPLTFD---KEQGLWILKRELPEG-RYEYKYIV 215 (283)
Q Consensus 161 ~v~f~w~---~~g~~~v~l~Gsf---~~W~--~~~pl~~~---~~~~~~~~~~~l~~g-~y~ykf~v 215 (283)
.|+|.-. ..| +.+.|+|+. .+|+ ..++|... .+++.|.+++.||++ .++|||++
T Consensus 8 ~V~F~i~~~t~~G-e~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~~~veYKy~~ 73 (106)
T cd05811 8 AVTFNERVTTSYG-ENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAGTSFEYKFIR 73 (106)
T ss_pred EEEEEEeeEcCCC-CeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCCCcEEEEEEE
Confidence 4555543 344 889999975 5788 35677643 235689999999988 49999996
No 82
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=94.96 E-value=0.025 Score=57.65 Aligned_cols=44 Identities=23% Similarity=0.377 Sum_probs=30.2
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHH-Hh----CCCHHHHHHHHHhhCCC
Q 040474 96 GGVTYVHCTAGLGRAPAVALAYMFW-VL----GYKLNEAHQLLLSKRPC 139 (283)
Q Consensus 96 ~~~VlVHC~~G~~RS~~v~~ayLm~-~~----~~~~~~A~~~v~~~r~~ 139 (283)
.+++.|||..|.||||+++++-++. .. -++.-.+.+.+|..||.
T Consensus 1018 ~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~rp~ 1066 (1087)
T KOG4228|consen 1018 DGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQRPG 1066 (1087)
T ss_pred CCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhcCcc
Confidence 6899999999999999977666442 22 13444555555665555
No 83
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=94.75 E-value=0.26 Score=36.36 Aligned_cols=43 Identities=23% Similarity=0.326 Sum_probs=34.2
Q ss_pred ceEEEeecc---CCCC--ccccceeecCCCeEEEEEecCCc-eEEEEEEE
Q 040474 172 TSVEISGID---IGWG--QRMPLTFDKEQGLWILKRELPEG-RYEYKYIV 215 (283)
Q Consensus 172 ~~v~l~Gsf---~~W~--~~~pl~~~~~~~~~~~~~~l~~g-~y~ykf~v 215 (283)
+.+.|+|+. .+|+ ..++|... ....|.+.+.||.| ..+|||++
T Consensus 16 e~l~v~Gs~~~LG~W~~~~a~~l~~~-~~~~W~~~v~lp~~~~veyKyv~ 64 (97)
T cd05810 16 QSVYVVGNVPQLGNWSPADAVKLDPT-AYPTWSGSISLPASTNVEWKCLK 64 (97)
T ss_pred CeEEEEEChHHhCCCChhhcccccCC-CCCeEEEEEEcCCCCeEEEEEEE
Confidence 899999965 4798 44566554 45679999999998 69999988
No 84
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=94.72 E-value=0.16 Score=37.33 Aligned_cols=29 Identities=34% Similarity=0.499 Sum_probs=19.6
Q ss_pred cCCCEEEEEcCCCCChhHHHHHHHHHHHhCCC
Q 040474 94 RNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125 (283)
Q Consensus 94 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 125 (283)
.++.+|+|+|..| .||.. ++.+| ...|.+
T Consensus 59 ~~~~~ivvyC~~G-~rs~~-a~~~L-~~~G~~ 87 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEK-ASAYL-KERGFK 87 (101)
T ss_pred cCCCEEEEECCCc-hhHHH-HHHHH-HHhCCc
Confidence 3567899999999 58854 34444 455653
No 85
>PLN02160 thiosulfate sulfurtransferase
Probab=94.43 E-value=0.12 Score=40.70 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=14.7
Q ss_pred cCCCEEEEEcCCCCChhHHH
Q 040474 94 RNGGVTYVHCTAGLGRAPAV 113 (283)
Q Consensus 94 ~~~~~VlVHC~~G~~RS~~v 113 (283)
..+.+|++||..| .||...
T Consensus 79 ~~~~~IivyC~sG-~RS~~A 97 (136)
T PLN02160 79 NPADDILVGCQSG-ARSLKA 97 (136)
T ss_pred CCCCcEEEECCCc-HHHHHH
Confidence 4567899999999 488543
No 86
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=93.99 E-value=0.35 Score=36.70 Aligned_cols=47 Identities=26% Similarity=0.567 Sum_probs=34.7
Q ss_pred CCCcceEEEeecc---CCCC--ccccceee------cCCCeEEEEEecCCc----eEEEEEEE
Q 040474 168 GKNCTSVEISGID---IGWG--QRMPLTFD------KEQGLWILKRELPEG----RYEYKYIV 215 (283)
Q Consensus 168 ~~g~~~v~l~Gsf---~~W~--~~~pl~~~------~~~~~~~~~~~l~~g----~y~ykf~v 215 (283)
..| +++.++|+- .+|+ ..++|... .....|.+.++||++ ..+|||+.
T Consensus 13 ~~g-q~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~ 74 (112)
T cd05806 13 DRD-TELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLK 74 (112)
T ss_pred CCC-CEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence 344 899999964 6787 44566653 234569999999986 69999998
No 87
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=93.41 E-value=1.1 Score=33.04 Aligned_cols=44 Identities=30% Similarity=0.505 Sum_probs=33.6
Q ss_pred ceEEEeecc---CCCC--ccccceee--cCCCeEEEEEecCCc-eEEEEEEE
Q 040474 172 TSVEISGID---IGWG--QRMPLTFD--KEQGLWILKRELPEG-RYEYKYIV 215 (283)
Q Consensus 172 ~~v~l~Gsf---~~W~--~~~pl~~~--~~~~~~~~~~~l~~g-~y~ykf~v 215 (283)
+++.|+|+. .+|+ ..++|... .+...|.+++.+|++ .++|||+|
T Consensus 14 e~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~~~~veYky~v 65 (101)
T cd05815 14 QSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPPGFSSEYNYYV 65 (101)
T ss_pred CEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCCCCcEEEEEEE
Confidence 899999965 5786 45677542 123479999999887 59999999
No 88
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=93.39 E-value=0.44 Score=34.43 Aligned_cols=49 Identities=22% Similarity=0.441 Sum_probs=32.6
Q ss_pred CCcceEEEeeccCCCCc--cccceeecC---CCeEEEEEecCCceEEEEEEE-CC
Q 040474 169 KNCTSVEISGIDIGWGQ--RMPLTFDKE---QGLWILKRELPEGRYEYKYIV-DG 217 (283)
Q Consensus 169 ~g~~~v~l~Gsf~~W~~--~~pl~~~~~---~~~~~~~~~l~~g~y~ykf~v-dg 217 (283)
.++..|.+.+.|++|.. .++|.+..- .+.|.+++.+|..-|...|+. ||
T Consensus 16 ~g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~vP~~a~~~dfvF~dg 70 (87)
T PF03423_consen 16 SGAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVDVPEDAYVMDFVFNDG 70 (87)
T ss_dssp S-S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE--TTTSEEEEEEE-S
T ss_pred CCCCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEEEcCCceEEEEEEcCC
Confidence 35789999999999983 356776532 689999999999988888888 65
No 89
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=93.08 E-value=0.44 Score=35.34 Aligned_cols=55 Identities=22% Similarity=0.375 Sum_probs=37.7
Q ss_pred ceEEEEeeC----CCcceEEEeecc---CCCCcc--ccceee---cCCCeEEEEEecCCc-eEEEEEEE
Q 040474 160 ELVTFSWKG----KNCTSVEISGID---IGWGQR--MPLTFD---KEQGLWILKRELPEG-RYEYKYIV 215 (283)
Q Consensus 160 ~~v~f~w~~----~g~~~v~l~Gsf---~~W~~~--~pl~~~---~~~~~~~~~~~l~~g-~y~ykf~v 215 (283)
.+++|.-.. .| +++.|+|+. .+|+.. +.|... ...+.|.+.++||.| .++|||++
T Consensus 3 v~v~f~v~~~~t~~G-q~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~~~eyK~~~ 70 (101)
T cd05807 3 VSVRFVVNNATTQLG-ENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGTTIEFKFIK 70 (101)
T ss_pred EEEEEEEeccccCCC-CEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCCcEEEEEEE
Confidence 355666532 34 899999965 579833 322211 234679999999998 59999999
No 90
>PRK01415 hypothetical protein; Validated
Probab=92.57 E-value=0.38 Score=41.86 Aligned_cols=28 Identities=25% Similarity=0.515 Sum_probs=20.2
Q ss_pred cCCCEEEEEcCCCCChhHHHHHHHHHHHhCC
Q 040474 94 RNGGVTYVHCTAGLGRAPAVALAYMFWVLGY 124 (283)
Q Consensus 94 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 124 (283)
.++++|+++|.+|+ || ..++++|. ..|.
T Consensus 169 ~k~k~Iv~yCtgGi-Rs-~kAa~~L~-~~Gf 196 (247)
T PRK01415 169 LKGKKIAMVCTGGI-RC-EKSTSLLK-SIGY 196 (247)
T ss_pred cCCCeEEEECCCCh-HH-HHHHHHHH-HcCC
Confidence 35678999999996 88 55566664 5555
No 91
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.29 E-value=0.3 Score=46.95 Aligned_cols=36 Identities=19% Similarity=0.444 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCCCChhHHHH-HHHHH
Q 040474 84 VISKLYKAINRNGGVTYVHCTAGLGRAPAVA-LAYMF 119 (283)
Q Consensus 84 ~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~-~ayLm 119 (283)
.+-.|...+...+.+|||||.-|=.||+-++ .|-||
T Consensus 362 ga~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~Ll 398 (717)
T KOG4471|consen 362 GAVRIADKVESESRSVLVHCSDGWDRTAQLVSLAMLL 398 (717)
T ss_pred HHHHHHHHHhcCCceEEEEcCCCccchHHHHHHHHHH
Confidence 3444555666778899999999999998744 44454
No 92
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=92.29 E-value=0.54 Score=34.71 Aligned_cols=72 Identities=18% Similarity=0.233 Sum_probs=41.9
Q ss_pred HHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeE-EEEEeccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEE
Q 040474 24 KLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQ-HIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVH 102 (283)
Q Consensus 24 ~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~-~~~ipi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVH 102 (283)
.+...+-..+|++++..+.....+ .. ..++|+.+....... .. + ...++++|+
T Consensus 14 ~~~~~~~~~liDvR~~~e~~~~~i--------------~~~~~~ip~~~~~~~~~~--~~---------~-~~~~~ivv~ 67 (110)
T COG0607 14 LLLAGEDAVLLDVREPEEYERGHI--------------PGAAINIPLSELKAAENL--LE---------L-PDDDPIVVY 67 (110)
T ss_pred HhhccCCCEEEeccChhHhhhcCC--------------Ccceeeeecccchhhhcc--cc---------c-CCCCeEEEE
Confidence 344556678999998754332222 12 566677654322100 00 2 456889999
Q ss_pred cCCCCChhHHHHHHHHHHHhCC
Q 040474 103 CTAGLGRAPAVALAYMFWVLGY 124 (283)
Q Consensus 103 C~~G~~RS~~v~~ayLm~~~~~ 124 (283)
|.+|. || ..++.+|. ..|+
T Consensus 68 C~~G~-rS-~~aa~~L~-~~G~ 86 (110)
T COG0607 68 CASGV-RS-AAAAAALK-LAGF 86 (110)
T ss_pred eCCCC-Ch-HHHHHHHH-HcCC
Confidence 99996 88 45555554 4443
No 93
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=91.69 E-value=0.78 Score=45.29 Aligned_cols=68 Identities=22% Similarity=0.269 Sum_probs=50.3
Q ss_pred ceEEEEeeCCCcceEEEeeccCCCCc-----cccceeecCCCeEEEEEe-cCCc-eEEEEEEECCE--eeecCCcceee
Q 040474 160 ELVTFSWKGKNCTSVEISGIDIGWGQ-----RMPLTFDKEQGLWILKRE-LPEG-RYEYKYIVDGE--WTCNKYELVSS 229 (283)
Q Consensus 160 ~~v~f~w~~~g~~~v~l~Gsf~~W~~-----~~pl~~~~~~~~~~~~~~-l~~g-~y~ykf~vdg~--w~~d~~~~~~~ 229 (283)
..+.|+.-.+.+++|.|.+ |++|+. .++|.+. .+|.|.+.++ +.+| .|.|+...+|. ++.||.+....
T Consensus 19 ~~~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~-~~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~~DPya~~~~ 95 (605)
T TIGR02104 19 EKTVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRG-ENGVWSAVLEGDLHGYFYTYQVCINGKWRETVDPYAKAVT 95 (605)
T ss_pred CeeEEEEECCCCCEEEEEE-EcCCCCCccceEEecccC-CCCEEEEEECCCCCCCEEEEEEEcCCCeEEEcCCCcceec
Confidence 4688998888889999997 777742 5688774 5799999997 5566 45555554665 48899987664
No 94
>PLN02316 synthase/transferase
Probab=89.54 E-value=0.76 Score=47.85 Aligned_cols=49 Identities=24% Similarity=0.477 Sum_probs=39.2
Q ss_pred CcceEEEeeccCCCCcc---ccceeec-CCCeEEEEEecCCceEEEEEEE-CCE
Q 040474 170 NCTSVEISGIDIGWGQR---MPLTFDK-EQGLWILKRELPEGRYEYKYIV-DGE 218 (283)
Q Consensus 170 g~~~v~l~Gsf~~W~~~---~pl~~~~-~~~~~~~~~~l~~g~y~ykf~v-dg~ 218 (283)
+..+|.|.|.||+|.-. ..|.+.. .+.+|++.+.+|+.-|.-.|+. ||.
T Consensus 169 ~~~~v~i~~gfN~W~~~~f~~~~~k~~~~g~ww~~~v~Vp~~A~~ldfVf~~g~ 222 (1036)
T PLN02316 169 NEPDVLIMGAFNGWRWKSFTERLEKTELGGDWWSCKLHIPKEAYKMDFVFFNGQ 222 (1036)
T ss_pred CCCceEEEeccccccccccceeccccccCCCeEEEEEecCccceEEEEEEeCCc
Confidence 45889999999999732 3555554 3668999999999999999998 774
No 95
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=88.86 E-value=1.2 Score=40.97 Aligned_cols=32 Identities=22% Similarity=0.477 Sum_probs=21.5
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCCCChhHHHHH
Q 040474 84 VISKLYKAINRNGGVTYVHCTAGLGRAPAVAL 115 (283)
Q Consensus 84 ~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ 115 (283)
.+..|.+.+...+..|||||..|-.||+.++.
T Consensus 219 ~a~~i~~~l~~~~~~Vlvh~~dGwDrt~q~~s 250 (353)
T PF06602_consen 219 GASRIADLLHDEGSSVLVHCSDGWDRTSQLSS 250 (353)
T ss_dssp HHHHHHHHHHTT--EEEEECTTSSSHHHHHHH
T ss_pred HHHHHHHHhhccCceEEEEcCCCCcccHHHHH
Confidence 34444555556788999999999999965443
No 96
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=88.65 E-value=2.8 Score=32.30 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=19.2
Q ss_pred cCCCEEEEEcCCCCChhHHHHHHHHHHHhCC
Q 040474 94 RNGGVTYVHCTAGLGRAPAVALAYMFWVLGY 124 (283)
Q Consensus 94 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 124 (283)
.+..+|+|+|..|-.||..++ +++...|.
T Consensus 84 ~~~~~vvvyC~~~G~rs~~a~--~~L~~~G~ 112 (128)
T cd01520 84 ERDPKLLIYCARGGMRSQSLA--WLLESLGI 112 (128)
T ss_pred CCCCeEEEEeCCCCccHHHHH--HHHHHcCC
Confidence 456789999975435775433 66666676
No 97
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=88.02 E-value=1.6 Score=33.01 Aligned_cols=29 Identities=24% Similarity=0.159 Sum_probs=19.4
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHHHhCCC
Q 040474 95 NGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125 (283)
Q Consensus 95 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 125 (283)
+..+|+|+|..| +++++.++..| ...|++
T Consensus 78 ~~~~vv~~c~~g-~~~a~~~~~~l-~~~G~~ 106 (122)
T cd01448 78 NDDTVVVYDDGG-GFFAARAWWTL-RYFGHE 106 (122)
T ss_pred CCCEEEEECCCC-CccHHHHHHHH-HHcCCC
Confidence 567899999997 55555555444 455654
No 98
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=87.70 E-value=1.9 Score=43.25 Aligned_cols=68 Identities=24% Similarity=0.350 Sum_probs=49.3
Q ss_pred cceEEEEeeCCCcceEEEeeccCCCC----ccccceeecCCCeEEEEEe-cCCceEEEEEEECCEe-------------e
Q 040474 159 KELVTFSWKGKNCTSVEISGIDIGWG----QRMPLTFDKEQGLWILKRE-LPEGRYEYKYIVDGEW-------------T 220 (283)
Q Consensus 159 ~~~v~f~w~~~g~~~v~l~Gsf~~W~----~~~pl~~~~~~~~~~~~~~-l~~g~y~ykf~vdg~w-------------~ 220 (283)
...+.|..-.+.++.|.|. .|+++. ..++|.+. .+|.|.+.+. +.+|. .|+|.|+|.| .
T Consensus 13 ~~g~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~~-~~gvW~~~v~~~~~g~-~Y~yrv~g~~~~~~g~~f~~~~~~ 89 (688)
T TIGR02100 13 GQGVNFALFSANAEKVELC-LFDAQGEKEEARLPLPER-TDDIWHGYLPGAQPGQ-LYGYRVHGPYDPENGHRFNPNKLL 89 (688)
T ss_pred CCcEEEEEECCCCCEEEEE-EEcCCCCceeeEEecccC-CCCEEEEEECCCCCCC-EEEEEEeeeeCCCCCcccCcCcee
Confidence 3568899888888999986 444443 24677764 5789999996 77776 4999999843 5
Q ss_pred ecCCcceee
Q 040474 221 CNKYELVSS 229 (283)
Q Consensus 221 ~d~~~~~~~ 229 (283)
.||.+....
T Consensus 90 ~DPYA~~~~ 98 (688)
T TIGR02100 90 LDPYAKALD 98 (688)
T ss_pred cCcCceeec
Confidence 677776654
No 99
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=87.62 E-value=1 Score=43.46 Aligned_cols=33 Identities=24% Similarity=0.491 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHH
Q 040474 83 AVISKLYKAINRNGGVTYVHCTAGLGRAPAVAL 115 (283)
Q Consensus 83 ~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ 115 (283)
++..+|.+++..+|..|||||.-|-.||..|+.
T Consensus 331 ~~a~~ia~~l~~~~~sVlvhcsdGwDrT~qV~S 363 (573)
T KOG1089|consen 331 KAAAEIAKCLSSEGASVLVHCSDGWDRTCQVSS 363 (573)
T ss_pred HHHHHHHHHHHhCCCeEEEEccCCcchhHHHHH
Confidence 355666777766778999999999999966544
No 100
>PLN02950 4-alpha-glucanotransferase
Probab=86.37 E-value=5.4 Score=41.33 Aligned_cols=69 Identities=22% Similarity=0.383 Sum_probs=48.5
Q ss_pred cceEEEEeeCC---CcceEEEeecc---CCCC--ccccceeecCCCeEEEEEecCCc--eEEEEEEE---CCE--eeecC
Q 040474 159 KELVTFSWKGK---NCTSVEISGID---IGWG--QRMPLTFDKEQGLWILKRELPEG--RYEYKYIV---DGE--WTCNK 223 (283)
Q Consensus 159 ~~~v~f~w~~~---g~~~v~l~Gsf---~~W~--~~~pl~~~~~~~~~~~~~~l~~g--~y~ykf~v---dg~--w~~d~ 223 (283)
...|+|.-..+ ..++|.|+|+- .+|+ ...+|... ....|.+++++|.+ ..+|||++ +|. |...+
T Consensus 152 ~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~-~~p~W~~~v~lp~~~~~~EYKyv~~~~~g~v~WE~g~ 230 (909)
T PLN02950 152 EIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYT-GDSIWEADCLVPKSDFPIKYKYALQTAEGLVSLELGV 230 (909)
T ss_pred ceeEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccC-CCCcEEEEEEecCCCceEEEEEEEEcCCCceEEeeCC
Confidence 35677775443 23899999965 5797 44566553 46789999999988 49999999 343 76666
Q ss_pred Cccee
Q 040474 224 YELVS 228 (283)
Q Consensus 224 ~~~~~ 228 (283)
+.-..
T Consensus 231 NR~~~ 235 (909)
T PLN02950 231 NRELS 235 (909)
T ss_pred Cceee
Confidence 55544
No 101
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=86.25 E-value=1.8 Score=32.12 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=18.3
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHHHhCC
Q 040474 95 NGGVTYVHCTAGLGRAPAVALAYMFWVLGY 124 (283)
Q Consensus 95 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 124 (283)
++.+|+|||..|. ||. .++..| +..|+
T Consensus 65 ~~~~ivv~C~~G~-rs~-~a~~~L-~~~G~ 91 (109)
T cd01533 65 PRTPIVVNCAGRT-RSI-IGAQSL-INAGL 91 (109)
T ss_pred CCCeEEEECCCCc-hHH-HHHHHH-HHCCC
Confidence 4578999999996 873 344444 45565
No 102
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=86.10 E-value=3.2 Score=42.74 Aligned_cols=82 Identities=22% Similarity=0.350 Sum_probs=56.0
Q ss_pred cceEEEEeeCCCcceEEEeeccCCCC--ccccceeecCCCeEEEEEe-cCCceEEEEEEEC------CE----eeecCCc
Q 040474 159 KELVTFSWKGKNCTSVEISGIDIGWG--QRMPLTFDKEQGLWILKRE-LPEGRYEYKYIVD------GE----WTCNKYE 225 (283)
Q Consensus 159 ~~~v~f~w~~~g~~~v~l~Gsf~~W~--~~~pl~~~~~~~~~~~~~~-l~~g~y~ykf~vd------g~----w~~d~~~ 225 (283)
...++|+.-.+.+++|.|+.-.++|. ..++|.+....|.|++.++ ...|. .|+|.|+ |+ .+.||..
T Consensus 134 ~~gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~~~~GVWsv~v~g~~~G~-~Y~Y~V~v~~p~~G~v~~~~v~DPYA 212 (898)
T TIGR02103 134 DSGVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRDSTSGVWSAEGGSSWKGA-YYRYEVTVYHPSTGKVETYLVTDPYS 212 (898)
T ss_pred CCcEEEEEECCCCCEEEEEEEcCCCCccceEeCccCCCCCEEEEEECcCCCCC-EeEEEEEEecCCCCeECCeEEeCcCc
Confidence 46789998888889999996555542 4578887645799999986 45564 3666664 54 4789998
Q ss_pred ceeecCCCCCcceEEEec
Q 040474 226 LVSSPNKDGHVNNYVQVD 243 (283)
Q Consensus 226 ~~~~~~~~G~~nn~i~v~ 243 (283)
-....+ |...-|+...
T Consensus 213 ~als~n--~~~S~VvDl~ 228 (898)
T TIGR02103 213 VSLSAN--SEYSQVVDLN 228 (898)
T ss_pred ceEcCC--CCCeEEeCCc
Confidence 877433 3443344443
No 103
>PLN02950 4-alpha-glucanotransferase
Probab=85.99 E-value=5.2 Score=41.41 Aligned_cols=64 Identities=23% Similarity=0.459 Sum_probs=43.1
Q ss_pred ceEEEEeeCCC--cceEEEeecc---CCCC--ccccceeec--CCCeEEEEEecCCc-eEEEEEEE---CCE---eeecC
Q 040474 160 ELVTFSWKGKN--CTSVEISGID---IGWG--QRMPLTFDK--EQGLWILKRELPEG-RYEYKYIV---DGE---WTCNK 223 (283)
Q Consensus 160 ~~v~f~w~~~g--~~~v~l~Gsf---~~W~--~~~pl~~~~--~~~~~~~~~~l~~g-~y~ykf~v---dg~---w~~d~ 223 (283)
..++|.-.... ++++.|+|+. .+|+ ..++|.... ++..|++++.||.| ..+|||++ ||. |...+
T Consensus 9 V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~~~~ieYKYv~v~~~g~vi~WE~g~ 88 (909)
T PLN02950 9 VTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPEGFSCEYSYYVVDDNKNVLRWEAGK 88 (909)
T ss_pred EEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecCCCeEEEEEEEEeCCCceeeeecCC
Confidence 34555544322 3899999976 5687 457775432 24479999999988 59999995 343 65555
No 104
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=85.53 E-value=5.3 Score=29.79 Aligned_cols=56 Identities=18% Similarity=0.286 Sum_probs=37.4
Q ss_pred ceEEEEeeCC--CcceEEEeeccCC--C-CccccceeecCCC---eEEEEEecCCceEEEEEEE
Q 040474 160 ELVTFSWKGK--NCTSVEISGIDIG--W-GQRMPLTFDKEQG---LWILKRELPEGRYEYKYIV 215 (283)
Q Consensus 160 ~~v~f~w~~~--g~~~v~l~Gsf~~--W-~~~~pl~~~~~~~---~~~~~~~l~~g~y~ykf~v 215 (283)
+.++++.... ...+|.|.-.-.. + ...++|.+....+ .|.+++.++.|.+.|.|.|
T Consensus 16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~~~~~~~~~~~i~~~~~~~~Y~F~l 79 (116)
T cd02857 16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGSDELFDYWEATLPPPTGRLRYYFEL 79 (116)
T ss_pred CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeeeCCceeEEEEEEecCCcEEEEEEEE
Confidence 4555555443 2467777554332 1 2468888775543 4899999888999999999
No 105
>PLN02316 synthase/transferase
Probab=84.25 E-value=4.8 Score=42.12 Aligned_cols=56 Identities=13% Similarity=0.150 Sum_probs=43.5
Q ss_pred ceEEEEeeCC-----CcceEEEeeccCCCCc------cccceeecCCCeEEEEEecCCceEEEEEEE
Q 040474 160 ELVTFSWKGK-----NCTSVEISGIDIGWGQ------RMPLTFDKEQGLWILKRELPEGRYEYKYIV 215 (283)
Q Consensus 160 ~~v~f~w~~~-----g~~~v~l~Gsf~~W~~------~~pl~~~~~~~~~~~~~~l~~g~y~ykf~v 215 (283)
.+|++-++.. ++.+|.+.|+||.|.. +..|.+.+.+..+.+++.+|..-|-..|+-
T Consensus 491 ~~v~v~Yn~~~t~l~~~~ev~~~g~~NrWth~~~~~~~~~m~~~~~g~~~~a~v~vP~da~~mdfvF 557 (1036)
T PLN02316 491 TTVTVLYNPANTVLNGKPEVWFRGSFNRWTHRLGPLPPQKMVPADNGSHLKATVKVPLDAYMMDFVF 557 (1036)
T ss_pred CEEEEEECCCCCcCCCCceEEEEccccCcCCCCCCCCceeeeecCCCceEEEEEEccccceEEEEEE
Confidence 5666666554 4699999999999973 345666655667899999999998888877
No 106
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=83.66 E-value=3.7 Score=31.07 Aligned_cols=19 Identities=21% Similarity=0.330 Sum_probs=14.5
Q ss_pred cCCCEEEEEcCCCCChhHHH
Q 040474 94 RNGGVTYVHCTAGLGRAPAV 113 (283)
Q Consensus 94 ~~~~~VlVHC~~G~~RS~~v 113 (283)
.+..+|+|+|..|. ||..+
T Consensus 62 ~~~~~ivv~C~~G~-rs~~a 80 (117)
T cd01522 62 GKDRPVLLLCRSGN-RSIAA 80 (117)
T ss_pred CCCCeEEEEcCCCc-cHHHH
Confidence 45678999999995 88543
No 107
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=83.45 E-value=4.3 Score=29.67 Aligned_cols=30 Identities=23% Similarity=0.455 Sum_probs=18.5
Q ss_pred cCCCEEEEEcCCCCChhHHHHHH---HHHHHhCC
Q 040474 94 RNGGVTYVHCTAGLGRAPAVALA---YMFWVLGY 124 (283)
Q Consensus 94 ~~~~~VlVHC~~G~~RS~~v~~a---yLm~~~~~ 124 (283)
.++..|+++|..|. |+...+.+ +.+...|+
T Consensus 65 ~~~~~iv~yc~~~~-~~~~~~~~~~~~~l~~~g~ 97 (113)
T PF00581_consen 65 DKDKDIVFYCSSGW-RSGSAAAARVAWILKKLGF 97 (113)
T ss_dssp TTTSEEEEEESSSC-HHHHHHHHHHHHHHHHTTT
T ss_pred cccccceeeeeccc-ccchhHHHHHHHHHHHcCC
Confidence 35668999997775 66554444 33444454
No 108
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=83.43 E-value=3.4 Score=29.24 Aligned_cols=28 Identities=25% Similarity=0.498 Sum_probs=16.8
Q ss_pred cCCCEEEEEcCCCCChhHHHHHHHHHHHhCC
Q 040474 94 RNGGVTYVHCTAGLGRAPAVALAYMFWVLGY 124 (283)
Q Consensus 94 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 124 (283)
..+.+|+|+|..|. |+. .+++++...|.
T Consensus 54 ~~~~~iv~~c~~g~-~a~--~~~~~l~~~G~ 81 (100)
T smart00450 54 DKDKPVVVYCRSGN-RSA--KAAWLLRELGF 81 (100)
T ss_pred CCCCeEEEEeCCCc-HHH--HHHHHHHHcCC
Confidence 45678999996664 652 23333445554
No 109
>PLN02960 alpha-amylase
Probab=82.75 E-value=2.7 Score=42.95 Aligned_cols=47 Identities=23% Similarity=0.339 Sum_probs=34.1
Q ss_pred ceEEEEeeCCCcceEEEeeccCCCCcc-ccce-----eecCCCeEEEEEe--cCCc
Q 040474 160 ELVTFSWKGKNCTSVEISGIDIGWGQR-MPLT-----FDKEQGLWILKRE--LPEG 207 (283)
Q Consensus 160 ~~v~f~w~~~g~~~v~l~Gsf~~W~~~-~pl~-----~~~~~~~~~~~~~--l~~g 207 (283)
..|.|.-=.+|++.+.|+|+||||+.. .++. ++ +-|.|.+.++ |..|
T Consensus 128 ~~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~ 182 (897)
T PLN02960 128 HRVDFMEWAPGARYCSLVGDFNNWSPTENRAREGYFGHD-DFGYWFIILEDKLREG 182 (897)
T ss_pred cCeEEEEEcCCceeEEEeecccCCCcccchhhccccccc-ccceEEEEechhhhcC
Confidence 477887777788999999999999844 3433 22 3467887775 6655
No 110
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=82.32 E-value=4.7 Score=42.60 Aligned_cols=68 Identities=16% Similarity=0.237 Sum_probs=50.4
Q ss_pred eEEEEeeCCCcceEEEee-ccCCCCc---cccceeecCCCeEEEEEe-cCCc-----eEEEEEEECC----EeeecCCcc
Q 040474 161 LVTFSWKGKNCTSVEISG-IDIGWGQ---RMPLTFDKEQGLWILKRE-LPEG-----RYEYKYIVDG----EWTCNKYEL 226 (283)
Q Consensus 161 ~v~f~w~~~g~~~v~l~G-sf~~W~~---~~pl~~~~~~~~~~~~~~-l~~g-----~y~ykf~vdg----~w~~d~~~~ 226 (283)
.++|+.-.+.+++|.|+. .+++|.. .++|.+. ..|.|.+.++ +.+| -+.|+|.|++ ..+.||.+.
T Consensus 328 ~v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~-~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~~~~~~DPYA~ 406 (1111)
T TIGR02102 328 TVTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKG-DRGVWEVQLTKENTGIDSLTGYYYHYEITRGGDKVLALDPYAK 406 (1111)
T ss_pred CEEEEEECCCCCEEEEEEEeCCCCCCceeeEecccC-CCCEEEEEECCcccCcccCCCceEEEEEECCCceEEEeChhhe
Confidence 378988888889999998 4455643 6788874 5899999886 4442 3678888876 467899887
Q ss_pred eee
Q 040474 227 VSS 229 (283)
Q Consensus 227 ~~~ 229 (283)
...
T Consensus 407 al~ 409 (1111)
T TIGR02102 407 SLA 409 (1111)
T ss_pred EEe
Confidence 654
No 111
>PRK03705 glycogen debranching enzyme; Provisional
Probab=80.54 E-value=6.2 Score=39.44 Aligned_cols=68 Identities=21% Similarity=0.184 Sum_probs=50.2
Q ss_pred cceEEEEeeCCCcceEEEeeccCCCC--ccccceeecCCCeEEEEEe-cCCceEEEEEEECCE-------------eeec
Q 040474 159 KELVTFSWKGKNCTSVEISGIDIGWG--QRMPLTFDKEQGLWILKRE-LPEGRYEYKYIVDGE-------------WTCN 222 (283)
Q Consensus 159 ~~~v~f~w~~~g~~~v~l~Gsf~~W~--~~~pl~~~~~~~~~~~~~~-l~~g~y~ykf~vdg~-------------w~~d 222 (283)
...+.|+.-.+.+++|.|+. |+++. ..++|.+. .+|.|.+.++ +.+|. .|+|.|+|. ...|
T Consensus 18 ~~g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~-~~gvW~~~v~~~~~G~-~Y~yrv~g~~~p~~g~~~~~~~~~~D 94 (658)
T PRK03705 18 GQGVNFTLFSAHAERVELCV-FDENGQEQRYDLPAR-SGDIWHGYLPGARPGL-RYGYRVHGPWQPAQGHRFNPAKLLID 94 (658)
T ss_pred CCCEEEEEECCCCCEEEEEE-EcCCCCeeeEeeeec-cCCEEEEEECCCCCCC-EEEEEEccccCcccCcccCCCcEecC
Confidence 35689988888889999987 55442 45778764 5789999986 66665 589999874 2578
Q ss_pred CCcceee
Q 040474 223 KYELVSS 229 (283)
Q Consensus 223 ~~~~~~~ 229 (283)
|.+....
T Consensus 95 PYA~~~~ 101 (658)
T PRK03705 95 PCARQVE 101 (658)
T ss_pred cCceEEc
Confidence 8877663
No 112
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=79.31 E-value=3.5 Score=38.13 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=17.5
Q ss_pred CEEEEEcCCCCChhHHHHHHHHHHHhCC
Q 040474 97 GVTYVHCTAGLGRAPAVALAYMFWVLGY 124 (283)
Q Consensus 97 ~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 124 (283)
.+|+|||..|. ||. .++.+|. ..|+
T Consensus 333 ~~Ivv~C~sG~-RS~-~Aa~~L~-~~G~ 357 (370)
T PRK05600 333 DNVVVYCASGI-RSA-DFIEKYS-HLGH 357 (370)
T ss_pred CcEEEECCCCh-hHH-HHHHHHH-HcCC
Confidence 38999999995 885 4455554 4554
No 113
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=78.50 E-value=20 Score=27.31 Aligned_cols=48 Identities=13% Similarity=0.176 Sum_probs=35.5
Q ss_pred HHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEecc
Q 040474 22 VDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIR 70 (283)
Q Consensus 22 ~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~ 70 (283)
++.|+..||+.||+++.-+.....+.....+...+.. .||.|+++|--
T Consensus 6 ~~~l~~~~i~~lVDVR~~P~S~~~~~~k~~l~~~l~~-~gi~Y~~~~~L 53 (122)
T PF04343_consen 6 YDLLKKNGIRVLVDVRLWPRSRKPGFNKEDLASFLEE-AGIEYVWLPEL 53 (122)
T ss_pred HHHHHHCCCeEEEEECCCCCCCCCCCCHHHHHHHHHH-CCceEeechhh
Confidence 4578999999999998766433556666666665555 59999998763
No 114
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=78.45 E-value=5.9 Score=28.48 Aligned_cols=27 Identities=19% Similarity=0.413 Sum_probs=18.1
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHHHhCC
Q 040474 95 NGGVTYVHCTAGLGRAPAVALAYMFWVLGY 124 (283)
Q Consensus 95 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 124 (283)
++.+|+++|..|. ||. .++.+| ...|.
T Consensus 55 ~~~~iv~~c~~G~-rs~-~aa~~L-~~~G~ 81 (95)
T cd01534 55 RGARIVLADDDGV-RAD-MTASWL-AQMGW 81 (95)
T ss_pred CCCeEEEECCCCC-hHH-HHHHHH-HHcCC
Confidence 3568999999995 774 344444 45565
No 115
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=78.10 E-value=3.3 Score=30.06 Aligned_cols=27 Identities=15% Similarity=0.180 Sum_probs=18.1
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHHHhCC
Q 040474 95 NGGVTYVHCTAGLGRAPAVALAYMFWVLGY 124 (283)
Q Consensus 95 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 124 (283)
.+.+|+|+|..|. ||. .++..| ...|+
T Consensus 60 ~~~~ivv~C~~G~-rs~-~aa~~L-~~~G~ 86 (100)
T cd01523 60 DDQEVTVICAKEG-SSQ-FVAELL-AERGY 86 (100)
T ss_pred CCCeEEEEcCCCC-cHH-HHHHHH-HHcCc
Confidence 5678999999995 874 344444 35555
No 116
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=76.65 E-value=5.2 Score=31.11 Aligned_cols=74 Identities=9% Similarity=0.076 Sum_probs=38.8
Q ss_pred cHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhH--hhhHHHHHHHHHHHHHcCCCE
Q 040474 21 DVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDL--RMRLPAVISKLYKAINRNGGV 98 (283)
Q Consensus 21 ~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~--~~~~~~~~~~i~~~l~~~~~~ 98 (283)
....|-+.+=...|++++..|....++ -.-++||..-.+..-. ...|.+-+. .+.-.....
T Consensus 29 qvk~L~~~~~~~llDVRepeEfk~gh~--------------~~siNiPy~~~~~~~~l~~~eF~kqvg---~~kp~~d~e 91 (136)
T KOG1530|consen 29 QVKNLLQHPDVVLLDVREPEEFKQGHI--------------PASINIPYMSRPGAGALKNPEFLKQVG---SSKPPHDKE 91 (136)
T ss_pred HHHHHhcCCCEEEEeecCHHHhhccCC--------------cceEeccccccccccccCCHHHHHHhc---ccCCCCCCc
Confidence 334555666678889988776533222 2345566632221110 112332222 222223347
Q ss_pred EEEEcCCCCChhHH
Q 040474 99 TYVHCTAGLGRAPA 112 (283)
Q Consensus 99 VlVHC~~G~~RS~~ 112 (283)
|+++|..|. ||..
T Consensus 92 iIf~C~SG~-Rs~~ 104 (136)
T KOG1530|consen 92 IIFGCASGV-RSLK 104 (136)
T ss_pred EEEEeccCc-chhH
Confidence 999999997 8843
No 117
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=75.78 E-value=6.1 Score=28.82 Aligned_cols=27 Identities=37% Similarity=0.522 Sum_probs=18.1
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHHHhCC
Q 040474 95 NGGVTYVHCTAGLGRAPAVALAYMFWVLGY 124 (283)
Q Consensus 95 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 124 (283)
++.+|+|+|..|. ||.. + ++++...|.
T Consensus 65 ~~~~ivv~c~~g~-~s~~-~-~~~l~~~G~ 91 (106)
T cd01519 65 KDKELIFYCKAGV-RSKA-A-AELARSLGY 91 (106)
T ss_pred CCCeEEEECCCcH-HHHH-H-HHHHHHcCC
Confidence 4678999999986 7633 3 344446665
No 118
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=73.26 E-value=4.5 Score=36.51 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=19.7
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHHHhCC
Q 040474 95 NGGVTYVHCTAGLGRAPAVALAYMFWVLGY 124 (283)
Q Consensus 95 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 124 (283)
++++|+|||.+|. || ..+++||. ..|.
T Consensus 170 kdk~IvvyC~~G~-Rs-~~aa~~L~-~~Gf 196 (314)
T PRK00142 170 KDKKVVMYCTGGI-RC-EKASAWMK-HEGF 196 (314)
T ss_pred CcCeEEEECCCCc-HH-HHHHHHHH-HcCC
Confidence 5678999999996 88 45566665 4554
No 119
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=73.15 E-value=6.6 Score=28.11 Aligned_cols=29 Identities=24% Similarity=0.098 Sum_probs=17.4
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHHHhCC
Q 040474 95 NGGVTYVHCTAGLGRAPAVALAYMFWVLGY 124 (283)
Q Consensus 95 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 124 (283)
+..+|+|+|..|. |+.+..++..+...|.
T Consensus 49 ~~~~ivl~c~~G~-~~~s~~aa~~L~~~G~ 77 (92)
T cd01532 49 RDTPIVVYGEGGG-EDLAPRAARRLSELGY 77 (92)
T ss_pred CCCeEEEEeCCCC-chHHHHHHHHHHHcCc
Confidence 3678999999985 4433333333344554
No 120
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=72.66 E-value=14 Score=28.03 Aligned_cols=55 Identities=13% Similarity=0.145 Sum_probs=35.3
Q ss_pred eEEEEeeCCCcceEEEe-eccCCC----C-ccccceeecCCC---eEEEEEecCCceEEEEEEE
Q 040474 161 LVTFSWKGKNCTSVEIS-GIDIGW----G-QRMPLTFDKEQG---LWILKRELPEGRYEYKYIV 215 (283)
Q Consensus 161 ~v~f~w~~~g~~~v~l~-Gsf~~W----~-~~~pl~~~~~~~---~~~~~~~l~~g~y~ykf~v 215 (283)
.++++-.....++|.|. |.-..| . ...+|.+...++ .|.+++.++..+..|.|.|
T Consensus 24 ~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~r~~Y~F~l 87 (120)
T PF02903_consen 24 HIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEKRLRYYFEL 87 (120)
T ss_dssp EEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTSEEEEEEEE
T ss_pred EEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCCeEEEEEEE
Confidence 34444444445788875 566655 2 456777764433 4899999999988888887
No 121
>PRK05320 rhodanese superfamily protein; Provisional
Probab=71.80 E-value=8.5 Score=33.70 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=19.6
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHHHhCC
Q 040474 95 NGGVTYVHCTAGLGRAPAVALAYMFWVLGY 124 (283)
Q Consensus 95 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 124 (283)
++++|+++|..|+ || ..++.+|. ..|+
T Consensus 174 kdk~IvvyC~~G~-Rs-~~Aa~~L~-~~Gf 200 (257)
T PRK05320 174 AGKTVVSFCTGGI-RC-EKAAIHMQ-EVGI 200 (257)
T ss_pred CCCeEEEECCCCH-HH-HHHHHHHH-HcCC
Confidence 4678999999996 88 45666664 4554
No 122
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=71.78 E-value=8 Score=34.34 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=15.7
Q ss_pred EEEEEcCCCCChhHHHHHH
Q 040474 98 VTYVHCTAGLGRAPAVALA 116 (283)
Q Consensus 98 ~VlVHC~~G~~RS~~v~~a 116 (283)
.|-|=|++|..||.+++=.
T Consensus 244 tIaiGCTGG~HRSV~iae~ 262 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIAER 262 (284)
T ss_pred EEEEEcCCCcCcHHHHHHH
Confidence 5888999999999876544
No 123
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=71.37 E-value=5.4 Score=32.24 Aligned_cols=29 Identities=17% Similarity=0.043 Sum_probs=20.0
Q ss_pred cCCCEEEEEcCCCCChhHHHHHHHHHHHhCC
Q 040474 94 RNGGVTYVHCTAGLGRAPAVALAYMFWVLGY 124 (283)
Q Consensus 94 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 124 (283)
.++.+|+++|..|..||.. +++++...|.
T Consensus 114 ~~d~~IVvYC~~G~~~S~~--aa~~L~~~G~ 142 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWN--AAKRALAYGY 142 (162)
T ss_pred CCCCEEEEEECCCCHHHHH--HHHHHHhcCC
Confidence 3567999999998777754 3444445554
No 124
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=70.73 E-value=16 Score=39.22 Aligned_cols=58 Identities=19% Similarity=0.201 Sum_probs=43.8
Q ss_pred cceEEEEeeCCCcceEEEeeccCCCCc----cccceeecCCCeEEEEEe-cCCceEEEEEEECCEe
Q 040474 159 KELVTFSWKGKNCTSVEISGIDIGWGQ----RMPLTFDKEQGLWILKRE-LPEGRYEYKYIVDGEW 219 (283)
Q Consensus 159 ~~~v~f~w~~~g~~~v~l~Gsf~~W~~----~~pl~~~~~~~~~~~~~~-l~~g~y~ykf~vdg~w 219 (283)
...+.|+.-.+.+++|.++ .|+.|.. .++|.. +.++.|...+. +.+|. .|+|.|+|.+
T Consensus 22 ~~gv~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~-~~g~vW~~~i~~~~~g~-~Ygyrv~g~~ 84 (1221)
T PRK14510 22 GGGVNLALFSGAAERVEFC-LFDLWGVREEARIKLPG-RTGDVWHGFIVGVGPGA-RYGNRQEGPG 84 (1221)
T ss_pred CCeEEEEEECCCCCEEEEE-EEECCCCCeeEEEECCC-CcCCEEEEEEccCCCCc-EEEEEeccCC
Confidence 3678999888888999987 7777752 356643 34788988876 78887 6999999843
No 125
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=70.37 E-value=5.3 Score=30.49 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=16.2
Q ss_pred cCCCEEEEEcC-CCCChhHHHHHHHHH
Q 040474 94 RNGGVTYVHCT-AGLGRAPAVALAYMF 119 (283)
Q Consensus 94 ~~~~~VlVHC~-~G~~RS~~v~~ayLm 119 (283)
.+..+|+|||. +| .||+. ++.+|.
T Consensus 66 ~~~~~vv~yC~~sg-~rs~~-aa~~L~ 90 (121)
T cd01530 66 KKRRVLIFHCEFSS-KRGPR-MARHLR 90 (121)
T ss_pred CCCCEEEEECCCcc-ccHHH-HHHHHH
Confidence 35678999997 77 48744 444554
No 126
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=70.34 E-value=32 Score=24.30 Aligned_cols=58 Identities=19% Similarity=0.416 Sum_probs=36.6
Q ss_pred eEEEEeeCCC--cceEEEeeccC-CCCccccceeecCCCeEEEEEecCCceEEEEEEE-C-CEeeec
Q 040474 161 LVTFSWKGKN--CTSVEISGIDI-GWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIV-D-GEWTCN 222 (283)
Q Consensus 161 ~v~f~w~~~g--~~~v~l~Gsf~-~W~~~~pl~~~~~~~~~~~~~~l~~g~y~ykf~v-d-g~w~~d 222 (283)
.+.+....+. -..|+|.++-. .| .||.+. -+..|.+.-.++.|-+.+|+.. | |+++..
T Consensus 15 ~v~v~n~gG~gdi~~Vevk~~~s~~W---~~m~r~-wGa~W~~~~~~~~~pls~Rvts~~~G~~vv~ 77 (82)
T PF01357_consen 15 AVLVKNVGGDGDIKAVEVKQSGSGNW---IPMKRS-WGAVWQIDSNPPGGPLSFRVTSGDSGQTVVA 77 (82)
T ss_dssp EEEEEECCTTS-EEEEEEEETTSSS----EE-EEE-CTTEEEEE-SS--SSEEEEEEETTTSEEEEE
T ss_pred EEEEEEcCCCccEEEEEEEeCCCCCc---eEeecC-cCceEEECCCCcCCCEEEEEEEcCCCeEEEE
Confidence 3444444332 37888886443 36 688886 4678888777888899999998 7 887654
No 127
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=70.21 E-value=11 Score=27.74 Aligned_cols=27 Identities=19% Similarity=0.421 Sum_probs=17.3
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHHHhCC
Q 040474 95 NGGVTYVHCTAGLGRAPAVALAYMFWVLGY 124 (283)
Q Consensus 95 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 124 (283)
...+|+|+|..|. ||... +..|. ..|.
T Consensus 57 ~~~~vvlyC~~G~-rS~~a-a~~L~-~~G~ 83 (101)
T TIGR02981 57 KNDTVKLYCNAGR-QSGMA-KDILL-DMGY 83 (101)
T ss_pred CCCeEEEEeCCCH-HHHHH-HHHHH-HcCC
Confidence 4568999999995 77443 33333 4554
No 128
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=69.90 E-value=8.5 Score=27.77 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=26.1
Q ss_pred CCeEEEEEecCCceEEEEEEECCEeeecCCccee
Q 040474 195 QGLWILKRELPEGRYEYKYIVDGEWTCNKYELVS 228 (283)
Q Consensus 195 ~~~~~~~~~l~~g~y~ykf~vdg~w~~d~~~~~~ 228 (283)
+|.-++.+.|+||+|....+. |.+.+-|.+|.+
T Consensus 50 ~Gqte~~I~L~PG~htLtl~~-~d~~h~~~~~~v 82 (87)
T PF14347_consen 50 KGQTELNIELPPGKHTLTLQL-GDGDHVPHDPPV 82 (87)
T ss_pred CCEEEEEEEeCCCCEEEEEEe-CCCCcccCCCce
Confidence 578899999999999999887 555666666654
No 129
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=67.34 E-value=12 Score=32.83 Aligned_cols=32 Identities=19% Similarity=0.297 Sum_probs=20.7
Q ss_pred HHHHHHHHHcCCC---EEEEEcCCCCChhHHHHHH
Q 040474 85 ISKLYKAINRNGG---VTYVHCTAGLGRAPAVALA 116 (283)
Q Consensus 85 ~~~i~~~l~~~~~---~VlVHC~~G~~RS~~v~~a 116 (283)
++++.-..+++|+ .|-|=|++|..||.+++=.
T Consensus 229 l~~~LP~y~~egks~lTIaIGCTGGqHRSV~iae~ 263 (286)
T COG1660 229 LEFWLPRYEKEGKSYLTIAIGCTGGQHRSVYIAEQ 263 (286)
T ss_pred HHHHhHHHHhcCCeEEEEEEccCCCccchHHHHHH
Confidence 3333333345555 3678899999999876544
No 130
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=66.88 E-value=11 Score=24.48 Aligned_cols=26 Identities=23% Similarity=0.172 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhh
Q 040474 111 PAVALAYMFWVLGYKLNEAHQLLLSK 136 (283)
Q Consensus 111 ~~v~~ayLm~~~~~~~~~A~~~v~~~ 136 (283)
..-+.+.||..+|++.++|+.+++..
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 44677889999999999999999864
No 131
>smart00400 ZnF_CHCC zinc finger.
Probab=66.31 E-value=8.1 Score=25.01 Aligned_cols=32 Identities=19% Similarity=0.368 Sum_probs=24.2
Q ss_pred EEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHH
Q 040474 100 YVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLL 133 (283)
Q Consensus 100 lVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v 133 (283)
..||.+ -++.|- ++.++|+..|++..+|++.+
T Consensus 23 ~~~Cf~-cg~gGd-~i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGGN-VISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCCC-HHHHHHHHHCcCHHHHHHHh
Confidence 578885 345554 46777888999999999875
No 132
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=64.73 E-value=58 Score=29.15 Aligned_cols=42 Identities=19% Similarity=0.297 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHH-cCCCEEEEEcCCCCChhHHHHHHHHHHHhCC
Q 040474 80 RLPAVISKLYKAIN-RNGGVTYVHCTAGLGRAPAVALAYMFWVLGY 124 (283)
Q Consensus 80 ~~~~~~~~i~~~l~-~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 124 (283)
.|.+...++.+..+ ..+++|+..|++|+ |- --+.+||. ..|+
T Consensus 155 tFrefP~~v~~~~~~~~~KkVvmyCTGGI-RC-EKas~~m~-~~GF 197 (308)
T COG1054 155 TFREFPAWVEENLDLLKDKKVVMYCTGGI-RC-EKASAWMK-ENGF 197 (308)
T ss_pred hhhhhHHHHHHHHHhccCCcEEEEcCCce-ee-hhhHHHHH-Hhcc
Confidence 44544455544332 24679999999999 65 34445543 5553
No 133
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=63.36 E-value=13 Score=27.58 Aligned_cols=18 Identities=17% Similarity=0.366 Sum_probs=13.2
Q ss_pred CCCEEEEEcCCCCChhHHH
Q 040474 95 NGGVTYVHCTAGLGRAPAV 113 (283)
Q Consensus 95 ~~~~VlVHC~~G~~RS~~v 113 (283)
.+.+|+++|..| .||...
T Consensus 59 ~~~~IVlyC~~G-~rS~~a 76 (104)
T PRK10287 59 KNDTVKLYCNAG-RQSGQA 76 (104)
T ss_pred CCCeEEEEeCCC-hHHHHH
Confidence 456799999998 476444
No 134
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=63.17 E-value=12 Score=27.16 Aligned_cols=28 Identities=21% Similarity=0.446 Sum_probs=18.4
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHHHhCCC
Q 040474 95 NGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125 (283)
Q Consensus 95 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 125 (283)
++.+|+++|..| .||. .++.+|. ..|.+
T Consensus 57 ~~~~vv~~c~~g-~rs~-~~~~~l~-~~G~~ 84 (101)
T cd01528 57 PDKDIVVLCHHG-GRSM-QVAQWLL-RQGFE 84 (101)
T ss_pred CCCeEEEEeCCC-chHH-HHHHHHH-HcCCc
Confidence 467899999998 4873 3444444 45553
No 135
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=62.13 E-value=43 Score=24.77 Aligned_cols=18 Identities=22% Similarity=0.458 Sum_probs=13.4
Q ss_pred CCCEEEEEcCCCCChhHH
Q 040474 95 NGGVTYVHCTAGLGRAPA 112 (283)
Q Consensus 95 ~~~~VlVHC~~G~~RS~~ 112 (283)
...+|++||..|-.||..
T Consensus 65 ~~~~iv~~C~~~g~rs~~ 82 (113)
T cd01443 65 GVKLAIFYCGSSQGRGPR 82 (113)
T ss_pred CCCEEEEECCCCCcccHH
Confidence 346899999986568754
No 136
>PLN02877 alpha-amylase/limit dextrinase
Probab=60.84 E-value=33 Score=35.85 Aligned_cols=69 Identities=20% Similarity=0.284 Sum_probs=46.4
Q ss_pred cceEEEEeeCCCcceEEEeeccCCCC-----ccccceeecCCCeEEEEEe-cCCceEEEEEEEC------CE----eeec
Q 040474 159 KELVTFSWKGKNCTSVEISGIDIGWG-----QRMPLTFDKEQGLWILKRE-LPEGRYEYKYIVD------GE----WTCN 222 (283)
Q Consensus 159 ~~~v~f~w~~~g~~~v~l~Gsf~~W~-----~~~pl~~~~~~~~~~~~~~-l~~g~y~ykf~vd------g~----w~~d 222 (283)
...++|..-.+.+++|.|.- |++|. ..++|. ..+|.|++.++ ...| +.|+|.|+ |+ .+.|
T Consensus 221 ~~g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~--~~~GVWsv~v~~~~~G-~~Y~Y~V~v~~p~~g~~~~~~v~D 296 (970)
T PLN02877 221 KDAVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLK--ESNGVWSVEGPKSWEG-CYYVYEVSVYHPSTGKVETCYAND 296 (970)
T ss_pred cCCEEEEEECCCCCEEEEEE-ecCCCCccceEEeccc--CCCCEEEEEeccCCCC-CeeEEEEeecccCCCcccccccCC
Confidence 45788988888889999884 44442 235665 45899999987 3455 44666675 32 2678
Q ss_pred CCcceeecC
Q 040474 223 KYELVSSPN 231 (283)
Q Consensus 223 ~~~~~~~~~ 231 (283)
|..-....|
T Consensus 297 PYA~als~n 305 (970)
T PLN02877 297 PYARGLSAD 305 (970)
T ss_pred ccceEEecC
Confidence 888876533
No 137
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=59.76 E-value=5 Score=33.58 Aligned_cols=71 Identities=21% Similarity=0.170 Sum_probs=46.9
Q ss_pred CCeEEEEEeccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCC----CHHHHHHHHHh
Q 040474 60 DDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGY----KLNEAHQLLLS 135 (283)
Q Consensus 60 ~~i~~~~ipi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~----~~~~A~~~v~~ 135 (283)
.++..+..|-+-....- ..+++..+...+.+.|=.+|=.=..|+|||.. +.-.|+ +...|++|+++
T Consensus 28 ~~iAli~HPHPl~gGtm----~nkvv~~la~~l~~~G~atlRfNfRgVG~S~G------~fD~GiGE~~Da~aaldW~~~ 97 (210)
T COG2945 28 APIALICHPHPLFGGTM----NNKVVQTLARALVKRGFATLRFNFRGVGRSQG------EFDNGIGELEDAAAALDWLQA 97 (210)
T ss_pred CceEEecCCCccccCcc----CCHHHHHHHHHHHhCCceEEeecccccccccC------cccCCcchHHHHHHHHHHHHh
Confidence 35666655555433321 24456666777777787888888999999943 223343 56678999999
Q ss_pred hCCCC
Q 040474 136 KRPCF 140 (283)
Q Consensus 136 ~r~~~ 140 (283)
++|..
T Consensus 98 ~hp~s 102 (210)
T COG2945 98 RHPDS 102 (210)
T ss_pred hCCCc
Confidence 99874
No 138
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=58.69 E-value=11 Score=32.96 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=21.1
Q ss_pred CCCChhHHHHHHHHHHHhCCCHHHHHHH
Q 040474 105 AGLGRAPAVALAYMFWVLGYKLNEAHQL 132 (283)
Q Consensus 105 ~G~~RS~~v~~ayLm~~~~~~~~~A~~~ 132 (283)
=|+||||+.+.+-++ .|++.++|.++
T Consensus 160 PGiSRSG~Ti~~~l~--~G~~r~~A~~f 185 (259)
T PF02673_consen 160 PGISRSGATITAGLL--LGLDREEAARF 185 (259)
T ss_pred CCcChHHHHHHHHHH--CCCCHHHHHHH
Confidence 499999998888774 78988888665
No 139
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=57.55 E-value=22 Score=32.91 Aligned_cols=42 Identities=14% Similarity=0.089 Sum_probs=29.2
Q ss_pred EEeeccCCCCccccceeecCCCeEEEEEe--cCCceEEEEEEECCE
Q 040474 175 EISGIDIGWGQRMPLTFDKEQGLWILKRE--LPEGRYEYKYIVDGE 218 (283)
Q Consensus 175 ~l~Gsf~~W~~~~pl~~~~~~~~~~~~~~--l~~g~y~ykf~vdg~ 218 (283)
.+.|+|-+= ...+.....+|.|+..+. .+||+|+.++.+||.
T Consensus 152 ~vvg~f~Dd--G~g~DE~p~DGvFT~~l~l~~~~G~Y~~~v~~~n~ 195 (374)
T TIGR03503 152 IVVGEFEDD--GEGLDERPGDGIFTGEFNLDVAPGEYRPTYQSRNP 195 (374)
T ss_pred EEEEeeccC--CccCCCCCCCceEEEEeeccCCCceEEEEEEEcCc
Confidence 466776431 222232245899998886 579999999999986
No 140
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=57.51 E-value=13 Score=26.56 Aligned_cols=28 Identities=18% Similarity=0.089 Sum_probs=18.3
Q ss_pred cCCCEEEEEcCCCCChhHHHHHHHHHHHhCC
Q 040474 94 RNGGVTYVHCTAGLGRAPAVALAYMFWVLGY 124 (283)
Q Consensus 94 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 124 (283)
..+.+|+|+|..| .||.. ++.+| +..|.
T Consensus 54 ~~~~~ivv~c~~g-~~s~~-~~~~l-~~~G~ 81 (96)
T cd01529 54 GRATRYVLTCDGS-LLARF-AAQEL-LALGG 81 (96)
T ss_pred CCCCCEEEEeCCh-HHHHH-HHHHH-HHcCC
Confidence 3567899999887 47744 34444 45564
No 141
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=57.22 E-value=37 Score=26.38 Aligned_cols=50 Identities=18% Similarity=0.058 Sum_probs=32.1
Q ss_pred ceEEEEeeCCCcceEEEeeccCCCCccccceeecCCCeEEEEEecCCceEEEE
Q 040474 160 ELVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYK 212 (283)
Q Consensus 160 ~~v~f~w~~~g~~~v~l~Gsf~~W~~~~pl~~~~~~~~~~~~~~l~~g~y~yk 212 (283)
..|+|.|.......|...++..-|.... .+.+.+..|+.+.+- ||.|.|+
T Consensus 62 DTVtw~~~d~~~Hnv~~~~~~~~~g~~~--~~~~~~~s~~~Tfe~-~G~Y~Y~ 111 (128)
T COG3794 62 DTVTWVNTDSVGHNVTAVGGMDPEGSGT--LKAGINESFTHTFET-PGEYTYY 111 (128)
T ss_pred CEEEEEECCCCCceEEEeCCCCcccccc--cccCCCcceEEEecc-cceEEEE
Confidence 6789999998558888888763343211 122223456666664 9999985
No 142
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=57.06 E-value=20 Score=31.93 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=15.3
Q ss_pred EEEEEcCCCCChhHHHHHH
Q 040474 98 VTYVHCTAGLGRAPAVALA 116 (283)
Q Consensus 98 ~VlVHC~~G~~RS~~v~~a 116 (283)
.|-|=|++|..||.+++=.
T Consensus 247 ~i~igCtGG~HRSV~~~e~ 265 (288)
T PRK05416 247 TIAIGCTGGQHRSVAIAER 265 (288)
T ss_pred EEEEecCCCcccHHHHHHH
Confidence 4888999999999776544
No 143
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=56.97 E-value=11 Score=27.60 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=12.9
Q ss_pred CCEEEEEcCCCCChhHH
Q 040474 96 GGVTYVHCTAGLGRAPA 112 (283)
Q Consensus 96 ~~~VlVHC~~G~~RS~~ 112 (283)
..+||+-|.+|++ |..
T Consensus 3 ~~~ILl~C~~G~s-SS~ 18 (95)
T TIGR00853 3 ETNILLLCAAGMS-TSL 18 (95)
T ss_pred ccEEEEECCCchh-HHH
Confidence 3579999999998 544
No 144
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=56.40 E-value=38 Score=24.75 Aligned_cols=16 Identities=19% Similarity=0.191 Sum_probs=12.4
Q ss_pred CCCEEEEEcCCCCChhH
Q 040474 95 NGGVTYVHCTAGLGRAP 111 (283)
Q Consensus 95 ~~~~VlVHC~~G~~RS~ 111 (283)
...+++|+|..|. ||.
T Consensus 57 ~~~~ivv~c~~g~-~s~ 72 (108)
T PRK00162 57 FDTPVMVMCYHGN-SSQ 72 (108)
T ss_pred CCCCEEEEeCCCC-CHH
Confidence 4568999999985 663
No 145
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=56.02 E-value=18 Score=26.23 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=16.9
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHHHhCC
Q 040474 96 GGVTYVHCTAGLGRAPAVALAYMFWVLGY 124 (283)
Q Consensus 96 ~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 124 (283)
+.+|+|+|..|. ||..++. .+...|.
T Consensus 65 ~~~vv~~c~~g~-~s~~~a~--~L~~~G~ 90 (105)
T cd01525 65 GKIIVIVSHSHK-HAALFAA--FLVKCGV 90 (105)
T ss_pred CCeEEEEeCCCc-cHHHHHH--HHHHcCC
Confidence 568999999996 7754333 3334554
No 146
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=55.91 E-value=16 Score=26.25 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=17.9
Q ss_pred cCCCEEEEEcCCCCChhHHHHHHHHHHHhCC
Q 040474 94 RNGGVTYVHCTAGLGRAPAVALAYMFWVLGY 124 (283)
Q Consensus 94 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 124 (283)
.++.+|+|+|..| .||.. + +.++...|+
T Consensus 59 ~~~~~ivv~c~~g-~~s~~-~-~~~l~~~G~ 86 (103)
T cd01447 59 AEDKPFVFYCASG-WRSAL-A-GKTLQDMGL 86 (103)
T ss_pred CCCCeEEEEcCCC-CcHHH-H-HHHHHHcCh
Confidence 4567899999988 47743 3 334445554
No 147
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=55.54 E-value=10 Score=37.05 Aligned_cols=41 Identities=17% Similarity=0.489 Sum_probs=31.5
Q ss_pred CCeEEEEEecCCc-eEEEEEEECCE----eeecCCcceeecCCCCC
Q 040474 195 QGLWILKRELPEG-RYEYKYIVDGE----WTCNKYELVSSPNKDGH 235 (283)
Q Consensus 195 ~~~~~~~~~l~~g-~y~ykf~vdg~----w~~d~~~~~~~~~~~G~ 235 (283)
+|.+.+..+.+|| +|.|+|.||++ |.+.-.......+.+|.
T Consensus 97 DG~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~ 142 (563)
T KOG1263|consen 97 DGVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGA 142 (563)
T ss_pred cCCccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeE
Confidence 5588899999999 69999999955 77877777774223444
No 148
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=55.31 E-value=13 Score=33.00 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=20.4
Q ss_pred CCCChhHHHHHHHHHHHhCCCHHHHHHH
Q 040474 105 AGLGRAPAVALAYMFWVLGYKLNEAHQL 132 (283)
Q Consensus 105 ~G~~RS~~v~~ayLm~~~~~~~~~A~~~ 132 (283)
=|+||||+.+.+-|+ .|++.++|.++
T Consensus 166 PGiSRSG~TI~a~l~--~G~~r~~Aa~f 191 (276)
T PRK12554 166 PGVSRSGATIIAGLL--LGLTREAAARF 191 (276)
T ss_pred cCCCCchHHHHHHHH--cCCCHHHHHHH
Confidence 389999997777664 69998888654
No 149
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=55.08 E-value=13 Score=32.50 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=20.5
Q ss_pred CCCChhHHHHHHHHHHHhCCCHHHHHHH
Q 040474 105 AGLGRAPAVALAYMFWVLGYKLNEAHQL 132 (283)
Q Consensus 105 ~G~~RS~~v~~ayLm~~~~~~~~~A~~~ 132 (283)
=|+||||+.+.+-|+ .|++-++|.++
T Consensus 160 PGiSRSG~TI~a~l~--~G~~r~~Aa~f 185 (255)
T TIGR00753 160 PGVSRSGSTISGGLF--IGLNRKAAAEF 185 (255)
T ss_pred cCCCCchHHHHHHHH--cCCCHHHHHHH
Confidence 389999997777664 69998888654
No 150
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=54.29 E-value=1.7e+02 Score=27.41 Aligned_cols=101 Identities=13% Similarity=0.152 Sum_probs=56.7
Q ss_pred HhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCC------CchhHhhhHHHHHHHHHHHHHcCCCEE
Q 040474 26 RQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDF------DAFDLRMRLPAVISKLYKAINRNGGVT 99 (283)
Q Consensus 26 ~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~------~~~~~~~~~~~~~~~i~~~l~~~~~~V 99 (283)
.+.|-.+|.+|.... +...+++.......+..=.+|+.+. ...++. -+..++.|+++.++.=.-+
T Consensus 86 ~~~GADtvMDLStgg-------dl~~iR~~il~~~~vpvGTVPiYqa~~~~~~~~~~~t--~d~~~~~ie~qa~~GVDfm 156 (420)
T PF01964_consen 86 EKAGADTVMDLSTGG-------DLDEIRRAILENSPVPVGTVPIYQAAIRKGGSIVDMT--EDDFFDVIEKQAKDGVDFM 156 (420)
T ss_dssp HHTT-SEEEE---ST-------THHHHHHHHHHT-SS-EEE-HHHHHHHHTTT-GGG----HHHHHHHHHHHHHHT--EE
T ss_pred HHhCCCEEEEcCCCC-------CHHHHHHHHHHhCCCccccchHHHHHHHhCCChhhCC--HHHHHHHHHHHHHcCCCEE
Confidence 389999999998766 3456666555545667777777431 122222 3446677777765544568
Q ss_pred EEEcCCC----------------CChhHHHHHHHHHHHhCC-----CHHHHHHHHHh
Q 040474 100 YVHCTAG----------------LGRAPAVALAYMFWVLGY-----KLNEAHQLLLS 135 (283)
Q Consensus 100 lVHC~~G----------------~~RS~~v~~ayLm~~~~~-----~~~~A~~~v~~ 135 (283)
-|||.-= +||.|+++++|+++...- .+++.++..+.
T Consensus 157 tiH~git~~~~~~~~~~~R~~giVSRGGs~l~~WM~~n~~ENPly~~fD~lLeI~k~ 213 (420)
T PF01964_consen 157 TIHCGITRETLERLKKSGRIMGIVSRGGSILAAWMLHNGKENPLYEHFDRLLEIAKE 213 (420)
T ss_dssp EE-TT--GGGGGGGT--TSSS----HHHHHHHHHHHHHTS--HHHHTHHHHHHHHTT
T ss_pred EEccchhHHHHHHHhhhccccCccccchHHHHHHHHhcCCcCcHHHhHHHHHHHHHH
Confidence 9999521 399999999999976654 35666666665
No 151
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=53.88 E-value=37 Score=24.88 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=21.7
Q ss_pred ceEEEEeeCCCcceEEEeeccCCCCccccceeecCCCeEEEEE-ecCCceEEE
Q 040474 160 ELVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKR-ELPEGRYEY 211 (283)
Q Consensus 160 ~~v~f~w~~~g~~~v~l~Gsf~~W~~~~pl~~~~~~~~~~~~~-~l~~g~y~y 211 (283)
++++++|...+.....+.-.-.++.. .+ ..+...+.++ .+.||+|+|
T Consensus 43 ~~v~l~~~N~~~~~h~~~i~~~~~~~--~l---~~g~~~~~~f~~~~~G~y~~ 90 (104)
T PF13473_consen 43 QPVTLTFTNNDSRPHEFVIPDLGISK--VL---PPGETATVTFTPLKPGEYEF 90 (104)
T ss_dssp CEEEEEEEE-SSS-EEEEEGGGTEEE--EE----TT-EEEEEEEE-S-EEEEE
T ss_pred CeEEEEEEECCCCcEEEEECCCceEE--EE---CCCCEEEEEEcCCCCEEEEE
Confidence 56777777766444444333222221 11 1234455555 689999877
No 152
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=53.34 E-value=20 Score=27.09 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=18.4
Q ss_pred cCCCEEEEEcCCCCChhHHHHHHHHHHHhCC
Q 040474 94 RNGGVTYVHCTAGLGRAPAVALAYMFWVLGY 124 (283)
Q Consensus 94 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 124 (283)
..+++|+|+|..|. ||. .++.+| ...|+
T Consensus 70 ~~~~~ivv~C~~G~-rs~-~aa~~L-~~~G~ 97 (122)
T cd01526 70 DKDSPIYVVCRRGN-DSQ-TAVRKL-KELGL 97 (122)
T ss_pred CCCCcEEEECCCCC-cHH-HHHHHH-HHcCC
Confidence 35678999999995 874 333333 35555
No 153
>KOG1004 consensus Exosomal 3'-5' exoribonuclease complex subunit Rrp40 [Translation, ribosomal structure and biogenesis]
Probab=53.34 E-value=31 Score=29.19 Aligned_cols=38 Identities=5% Similarity=-0.000 Sum_probs=31.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHh
Q 040474 96 GGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLS 135 (283)
Q Consensus 96 ~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~ 135 (283)
+|+|+|||.. .+...+++-+||....|+-++++.++++
T Consensus 185 NGriWV~ae~--~~~t~~i~~~l~~~e~~td~~q~~~~k~ 222 (230)
T KOG1004|consen 185 NGRIWVKAET--LSDTLIIANILMNCEFMTDTQQRIMVKQ 222 (230)
T ss_pred CceEEEeccC--cchHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 5789999987 4566778888999999999998877665
No 154
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=52.89 E-value=8.3 Score=28.41 Aligned_cols=10 Identities=40% Similarity=1.049 Sum_probs=8.8
Q ss_pred CEEEEEcCCC
Q 040474 97 GVTYVHCTAG 106 (283)
Q Consensus 97 ~~VlVHC~~G 106 (283)
.+|||||.-|
T Consensus 86 ~~~yIhCsIG 95 (97)
T PF10302_consen 86 PRIYIHCSIG 95 (97)
T ss_pred CeEEEEEecc
Confidence 5899999877
No 155
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=52.85 E-value=15 Score=32.36 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=20.7
Q ss_pred CCCChhHHHHHHHHHHHhCCCHHHHHHH
Q 040474 105 AGLGRAPAVALAYMFWVLGYKLNEAHQL 132 (283)
Q Consensus 105 ~G~~RS~~v~~ayLm~~~~~~~~~A~~~ 132 (283)
=|+||||+.+.+-|. .|++.++|.++
T Consensus 164 PGiSRSG~TI~~~l~--~G~~r~~Aa~f 189 (268)
T PRK00281 164 PGTSRSGATISGGLL--LGLSREAAAEF 189 (268)
T ss_pred CCCCccHHHHHHHHH--cCCCHHHHHHH
Confidence 499999997777663 79998888654
No 156
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=51.74 E-value=22 Score=27.80 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=19.8
Q ss_pred CCCeEEEEEecCCceEEEEEEECCE
Q 040474 194 EQGLWILKRELPEGRYEYKYIVDGE 218 (283)
Q Consensus 194 ~~~~~~~~~~l~~g~y~ykf~vdg~ 218 (283)
+.|.|. +++.||.|.--..++|.
T Consensus 45 ~~G~Ys--~~~epG~Y~V~l~~~g~ 67 (134)
T PF08400_consen 45 EAGEYS--FDVEPGVYRVTLKVEGR 67 (134)
T ss_pred CCceEE--EEecCCeEEEEEEECCC
Confidence 467777 88899999999999987
No 157
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=51.64 E-value=18 Score=25.92 Aligned_cols=17 Identities=24% Similarity=0.610 Sum_probs=13.0
Q ss_pred cCCCEEEEEcCCCCChhH
Q 040474 94 RNGGVTYVHCTAGLGRAP 111 (283)
Q Consensus 94 ~~~~~VlVHC~~G~~RS~ 111 (283)
..+.+|+++|..|. ||.
T Consensus 52 ~~~~~iv~~c~~g~-~s~ 68 (99)
T cd01527 52 VGANAIIFHCRSGM-RTQ 68 (99)
T ss_pred CCCCcEEEEeCCCc-hHH
Confidence 34578999999995 664
No 158
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=50.88 E-value=19 Score=26.36 Aligned_cols=37 Identities=16% Similarity=0.288 Sum_probs=25.2
Q ss_pred EEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCC
Q 040474 100 YVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRP 138 (283)
Q Consensus 100 lVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~ 138 (283)
.-||.+ -|.+|- ++.++|...++++.+|++++.+.-.
T Consensus 54 ~~~Cf~-Cg~~Gd-~i~~v~~~~~~~f~eAv~~l~~~~~ 90 (97)
T PF01807_consen 54 RFKCFG-CGKGGD-VIDFVMKYEGCSFKEAVKWLAEEFG 90 (97)
T ss_dssp EEEETT-T--EE--HHHHHHHHHT--HHHHHHHHHHHHT
T ss_pred eEEECC-CCCCCc-HHhHHHHHhCCCHHHHHHHHHHHhC
Confidence 789986 466664 4667799999999999999877543
No 159
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=50.49 E-value=90 Score=24.10 Aligned_cols=61 Identities=15% Similarity=0.112 Sum_probs=30.2
Q ss_pred eEEEEEeccCCCchhHhh-hHHHHHHHHHHHHHcCCCE-EEEEcCCCCChhHHHHHHHHHHHhC
Q 040474 62 IQHIRAEIRDFDAFDLRM-RLPAVISKLYKAINRNGGV-TYVHCTAGLGRAPAVALAYMFWVLG 123 (283)
Q Consensus 62 i~~~~ipi~D~~~~~~~~-~~~~~~~~i~~~l~~~~~~-VlVHC~~G~~RS~~v~~ayLm~~~~ 123 (283)
+.-+.+|++|...+.-.. .+..+.+.|.+. +++++. .+.-|-+|==++-++.++|.+..+|
T Consensus 54 i~~i~~~~~DI~t~~d~~~~~~~I~~~i~~l-~~~~~~~~lh~~iaGGRK~Ms~~~~~a~sl~g 116 (124)
T TIGR03642 54 VHKIPLKFDDILSDEDILTFMSIAAKEVKKE-RENYGCERIIVNISGGRKIMTIILALYAQLLF 116 (124)
T ss_pred EEEeccCccccCCHHHHHHHHHHHHHHHHHH-hhCCCcceEEEEecCCHHHHHHHHHHHHHHhC
Confidence 444455677766554322 233333333333 344442 3555667732444466666665555
No 160
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=49.64 E-value=49 Score=27.64 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHH
Q 040474 79 MRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMF 119 (283)
Q Consensus 79 ~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm 119 (283)
..+.++++.+.+.+ .++++|++. |.|+|++++..+-+
T Consensus 25 ~~i~~a~~~l~~~l-~~~~rI~~~---G~GgSa~~A~~~a~ 61 (196)
T PRK10886 25 DAISRAAMTLVQSL-LNGNKILCC---GNGTSAANAQHFAA 61 (196)
T ss_pred HHHHHHHHHHHHHH-HcCCEEEEE---ECcHHHHHHHHHHH
Confidence 45778888888887 467778775 88899776655544
No 161
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=49.02 E-value=99 Score=25.22 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=25.5
Q ss_pred ccccccCCeEEcCCCCCcccHHH--HHhcCCcEEE
Q 040474 2 TYNFIRPDLIVGSCLQTPEDVDK--LRQIGVKTIF 34 (283)
Q Consensus 2 ~~~~I~~~l~lG~~p~~~~~~~~--L~~~gI~~Vv 34 (283)
+.+.+.|++|+-+. ..-+++. |++.||+.||
T Consensus 13 ~p~l~~P~l~V~si--~~I~~~~~~Lk~~Gik~li 45 (168)
T PF09419_consen 13 NPSLLLPHLYVPSI--RDIDFEANHLKKKGIKALI 45 (168)
T ss_pred CccccCCCEEcCCh--hhCCcchhhhhhcCceEEE
Confidence 45678899999887 4567788 9999999998
No 162
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=48.81 E-value=86 Score=30.56 Aligned_cols=101 Identities=14% Similarity=0.144 Sum_probs=58.6
Q ss_pred HhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccC------CCchhHhhhHHHHHHHHHHHHHcCCCEE
Q 040474 26 RQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRD------FDAFDLRMRLPAVISKLYKAINRNGGVT 99 (283)
Q Consensus 26 ~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D------~~~~~~~~~~~~~~~~i~~~l~~~~~~V 99 (283)
.+.|..+|.+|....+ ...+++.......+..=.+|+.. ....++ ..+...+.|.++.++.=.-+
T Consensus 242 ~~~GADtvMDLSTGgd-------i~~~R~~Il~~spvPvGTVPiYqA~~~~~~~~~~l--t~e~~~d~ieeQAeqGVDf~ 312 (607)
T PRK09284 242 TRWGADTVMDLSTGKN-------IHETREWILRNSPVPIGTVPIYQALEKVNGVAEDL--TWEIFRDTLIEQAEQGVDYF 312 (607)
T ss_pred HHcCCCEEEecCCCCC-------HHHHHHHHHHcCCCCccCccHHHHHHHhcCChhhC--CHHHHHHHHHHHHHhCCCEE
Confidence 3899999999987664 34444443332233333344421 111111 13334556666654433458
Q ss_pred EEEcCC-------------C-CChhHHHHHHHHHHHhCC-----CHHHHHHHHHh
Q 040474 100 YVHCTA-------------G-LGRAPAVALAYMFWVLGY-----KLNEAHQLLLS 135 (283)
Q Consensus 100 lVHC~~-------------G-~~RS~~v~~ayLm~~~~~-----~~~~A~~~v~~ 135 (283)
-|||-- | +||-|+++++|++....- .+++.++.+++
T Consensus 313 TIHaGv~~~~v~~~~~R~tgIVSRGGSima~Wml~h~kENplYe~FD~ileI~k~ 367 (607)
T PRK09284 313 TIHAGVLLRYVPLTAKRVTGIVSRGGSIMAKWCLAHHKENFLYTHFEEICEIMAA 367 (607)
T ss_pred EEChhhHHHHHHHHhCcccCcccCCHHHHHHHHHHcCCcCcHHHHHHHHHHHHHH
Confidence 889842 2 399999999999866554 25566666654
No 163
>PLN02444 HMP-P synthase
Probab=48.10 E-value=74 Score=31.06 Aligned_cols=101 Identities=12% Similarity=0.088 Sum_probs=58.9
Q ss_pred HhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccC------CCchhHhhhHHHHHHHHHHHHHcCCCEE
Q 040474 26 RQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRD------FDAFDLRMRLPAVISKLYKAINRNGGVT 99 (283)
Q Consensus 26 ~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D------~~~~~~~~~~~~~~~~i~~~l~~~~~~V 99 (283)
.+.|..+|.+|....+ ...+++.......+..=.+|+.+ ....++ ..+...+.|.++.++.=.-+
T Consensus 247 ~~~GADTvMDLSTGgd-------i~~iR~~Il~~spvPVGTVPIYqA~~~~~~~~~~l--t~d~~~d~ieeQaeqGVDfm 317 (642)
T PLN02444 247 TMWGADTVMDLSTGRH-------IHETREWILRNSPVPVGTVPIYQALEKVDGIAENL--TWEVFRETLIEQAEQGVDYF 317 (642)
T ss_pred HHcCCCeEeeccCCCC-------HHHHHHHHHHcCCCCccCccHHHHHHHhcCChhhC--CHHHHHHHHHHHHHhCCCEE
Confidence 3899999999987764 34444443332233333344421 111111 13345566666654433568
Q ss_pred EEEcCC-------------C-CChhHHHHHHHHHHHhCC-----CHHHHHHHHHh
Q 040474 100 YVHCTA-------------G-LGRAPAVALAYMFWVLGY-----KLNEAHQLLLS 135 (283)
Q Consensus 100 lVHC~~-------------G-~~RS~~v~~ayLm~~~~~-----~~~~A~~~v~~ 135 (283)
-|||-- | +||-|+++++|++....- .+++.++..++
T Consensus 318 TIH~Gv~~~~v~~~~~R~tgIVSRGGSi~a~Wml~~~kENPlYe~FD~ileI~k~ 372 (642)
T PLN02444 318 TIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDDILDICNQ 372 (642)
T ss_pred EEChhhHHHHHHHHhCcccCceeCCcHHHHHHHHHcCCcCchHHHHHHHHHHHHH
Confidence 899942 2 399999999999866543 35566666654
No 164
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=47.27 E-value=30 Score=24.43 Aligned_cols=28 Identities=14% Similarity=0.198 Sum_probs=17.1
Q ss_pred cCCCEEEEEcCCCCChhHHHHHHHHHHHhCC
Q 040474 94 RNGGVTYVHCTAGLGRAPAVALAYMFWVLGY 124 (283)
Q Consensus 94 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 124 (283)
.++.+|+|+|..|. ||.. ++. .++..|.
T Consensus 54 ~~~~~ivv~c~~g~-~s~~-a~~-~l~~~G~ 81 (96)
T cd01444 54 DRDRPVVVYCYHGN-SSAQ-LAQ-ALREAGF 81 (96)
T ss_pred CCCCCEEEEeCCCC-hHHH-HHH-HHHHcCC
Confidence 35678999999774 6533 333 3335554
No 165
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=46.79 E-value=13 Score=32.84 Aligned_cols=15 Identities=20% Similarity=0.333 Sum_probs=12.1
Q ss_pred CCCEEEEEcCCCCChh
Q 040474 95 NGGVTYVHCTAGLGRA 110 (283)
Q Consensus 95 ~~~~VlVHC~~G~~RS 110 (283)
.+.+|+++|..|. ||
T Consensus 230 ~~~~ii~yC~~G~-~A 244 (281)
T PRK11493 230 FDRPIIASCGSGV-TA 244 (281)
T ss_pred CCCCEEEECCcHH-HH
Confidence 4568999999986 55
No 166
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=45.47 E-value=14 Score=31.64 Aligned_cols=33 Identities=24% Similarity=0.475 Sum_probs=25.5
Q ss_pred ccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCC
Q 040474 6 IRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDP 40 (283)
Q Consensus 6 I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~ 40 (283)
|.+++.+... .-+|++.++..||+.||.|+..+
T Consensus 3 iD~HiH~d~r--~~eDlekMa~sGI~~Vit~AhdP 35 (254)
T COG1099 3 IDSHIHLDVR--GFEDLEKMALSGIREVITLAHDP 35 (254)
T ss_pred cccccccccc--cHHHHHHHHHhChhhhhhcccCC
Confidence 4455655554 67899999999999999998654
No 167
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=44.95 E-value=25 Score=24.92 Aligned_cols=14 Identities=29% Similarity=0.610 Sum_probs=11.6
Q ss_pred CEEEEEcCCCCChh
Q 040474 97 GVTYVHCTAGLGRA 110 (283)
Q Consensus 97 ~~VlVHC~~G~~RS 110 (283)
++|++.|.+|+|=|
T Consensus 1 ~kilvvCg~G~gtS 14 (87)
T cd05567 1 KKIVFACDAGMGSS 14 (87)
T ss_pred CEEEEECCCCccHH
Confidence 36999999999755
No 168
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=44.27 E-value=1.3e+02 Score=27.18 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=21.2
Q ss_pred cCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHH
Q 040474 94 RNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEA 129 (283)
Q Consensus 94 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A 129 (283)
+.|-+|.+||..|. |.+.-.+.+|. ..|.+++..
T Consensus 153 ~TG~pI~~H~~~g~-~~~~e~~~il~-e~Gv~~~rv 186 (308)
T PF02126_consen 153 ETGAPISTHTGRGT-RMGLEQLDILE-EEGVDPSRV 186 (308)
T ss_dssp HHT-EEEEEESTTG-TCHHHHHHHHH-HTT--GGGE
T ss_pred HhCCeEEEcCCCCC-cCHHHHHHHHH-HcCCChhHe
Confidence 45889999998885 45666666654 677766543
No 169
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=42.08 E-value=84 Score=26.10 Aligned_cols=41 Identities=27% Similarity=0.537 Sum_probs=24.3
Q ss_pred CCCccccceeecCCCeEEEEEec-CCceEEEEEE--EC--CEeeecCC
Q 040474 182 GWGQRMPLTFDKEQGLWILKREL-PEGRYEYKYI--VD--GEWTCNKY 224 (283)
Q Consensus 182 ~W~~~~pl~~~~~~~~~~~~~~l-~~g~y~ykf~--vd--g~w~~d~~ 224 (283)
.|+ .+||... .+..|.+.+.+ .+|.|+|+.. +| +.|.++=.
T Consensus 56 ~w~-~vpM~~~-gnDrW~a~f~~~~~G~~~f~VeAW~D~faTW~~~~~ 101 (187)
T PF11896_consen 56 EWQ-EVPMTPL-GNDRWEASFTPDRPGRYEFRVEAWVDHFATWRHDLE 101 (187)
T ss_dssp B-----B-EES-TS-EEEEEEE--SSEEEEEEEEEEE-HHHHHHHHHH
T ss_pred cce-eeccccC-CCCEEEEEEECCCceeEEEEEEEEeccHHHHHHhhh
Confidence 476 5899987 57789999986 5899999875 35 44665533
No 170
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=40.36 E-value=66 Score=29.46 Aligned_cols=28 Identities=18% Similarity=0.089 Sum_probs=18.5
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHHHhCC
Q 040474 95 NGGVTYVHCTAGLGRAPAVALAYMFWVLGY 124 (283)
Q Consensus 95 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 124 (283)
++.+|+|+|..|-.||..++ +++...|+
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa--~~L~~~G~ 114 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQ--QWLKEAGI 114 (345)
T ss_pred CCCeEEEEECCCChHHHHHH--HHHHHcCC
Confidence 56789999965445986653 33345665
No 171
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=39.62 E-value=55 Score=24.13 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=17.6
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHHHhCC
Q 040474 95 NGGVTYVHCTAGLGRAPAVALAYMFWVLGY 124 (283)
Q Consensus 95 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 124 (283)
++.+|+++|..|. ||..+ ++++...|.
T Consensus 77 ~~~~iv~yc~~g~-~s~~~--~~~l~~~G~ 103 (118)
T cd01449 77 PDKPVIVYCGSGV-TACVL--LLALELLGY 103 (118)
T ss_pred CCCCEEEECCcHH-HHHHH--HHHHHHcCC
Confidence 5678999999985 66443 333445555
No 172
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=39.47 E-value=93 Score=29.11 Aligned_cols=103 Identities=14% Similarity=0.122 Sum_probs=59.0
Q ss_pred HhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCch---hHh-hhHHHHHHHHHHHHHcCCCEEEE
Q 040474 26 RQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAF---DLR-MRLPAVISKLYKAINRNGGVTYV 101 (283)
Q Consensus 26 ~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~---~~~-~~~~~~~~~i~~~l~~~~~~VlV 101 (283)
.+.|..+|.+|....+ ...+++.......+..=.+|+.+.-.. ++. -.-+..++.|+++.++.=.-+-|
T Consensus 87 ~~~GADtiMDLStGgd-------l~~iR~~il~~s~vpvGTVPiYqa~~~~~~~~~~mt~d~~~~~ie~qa~dGVDfmTi 159 (423)
T TIGR00190 87 IKYGADTVMDLSTGGD-------LDEIRKAILDAVPVPVGTVPIYQAAEKVHGAVEDMDEDDMFRAIEKQAKDGVDFMTI 159 (423)
T ss_pred HHcCCCeEeeccCCCC-------HHHHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHHHHHHHHHHHHhCCCEEEE
Confidence 3899999999987764 344444433322333334444221000 000 11234566677776544456889
Q ss_pred EcC-----------CC-----CChhHHHHHHHHHHHhCC-----CHHHHHHHHHh
Q 040474 102 HCT-----------AG-----LGRAPAVALAYMFWVLGY-----KLNEAHQLLLS 135 (283)
Q Consensus 102 HC~-----------~G-----~~RS~~v~~ayLm~~~~~-----~~~~A~~~v~~ 135 (283)
||- .| +||-|+++++|++....- .+++-++..+.
T Consensus 160 H~Gi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~~~~ENPlye~fD~lLeI~~~ 214 (423)
T TIGR00190 160 HAGVLLEYVERLKRSGRITGIVSRGGAILAAWMLHHHKENPLYKNFDYILEIAKE 214 (423)
T ss_pred ccchhHHHHHHHHhCCCccCeecCcHHHHHHHHHHcCCcCchHHHHHHHHHHHHH
Confidence 995 12 399999999999865543 24555555554
No 173
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=38.69 E-value=57 Score=26.64 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=22.5
Q ss_pred HhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHH
Q 040474 77 LRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPA 112 (283)
Q Consensus 77 ~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~ 112 (283)
+...+..+.+.|.+.+ .+|+|||++ |.|+|++
T Consensus 23 l~~~I~~aa~~i~~~l-~~G~Kvl~c---GNGgSaa 54 (176)
T COG0279 23 LIEAIERAAQLLVQSL-LNGNKVLAC---GNGGSAA 54 (176)
T ss_pred hHHHHHHHHHHHHHHH-HcCCEEEEE---CCCcchh
Confidence 3456677788888887 568888764 6667754
No 174
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=38.51 E-value=13 Score=22.59 Aligned_cols=13 Identities=54% Similarity=1.007 Sum_probs=11.5
Q ss_pred CCCEEEEEcCCCC
Q 040474 95 NGGVTYVHCTAGL 107 (283)
Q Consensus 95 ~~~~VlVHC~~G~ 107 (283)
++|.|||.|--|+
T Consensus 7 p~GVIlVF~lVgl 19 (43)
T PF08114_consen 7 PGGVILVFCLVGL 19 (43)
T ss_pred CCCeeeehHHHHH
Confidence 6899999999886
No 175
>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins. Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=38.16 E-value=39 Score=24.86 Aligned_cols=34 Identities=15% Similarity=0.283 Sum_probs=26.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHHHhCCC-HHHHHHHHH
Q 040474 96 GGVTYVHCTAGLGRAPAVALAYMFWVLGYK-LNEAHQLLL 134 (283)
Q Consensus 96 ~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~-~~~A~~~v~ 134 (283)
.++|+=||..| +-++-||+.....+ -.||+.+-.
T Consensus 24 ~~tv~~hcftG-----sdVVdWLv~~~~v~~r~EAl~las 58 (99)
T cd04445 24 DKKVFNHCFTG-----SCVIDWLVSNQSVRNRQEGLMLAS 58 (99)
T ss_pred hhccccceecc-----cHHHHHHHHhhcccchHHHHHHHH
Confidence 45799999988 56889999888875 888877543
No 176
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=38.09 E-value=92 Score=26.26 Aligned_cols=35 Identities=11% Similarity=0.311 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHh
Q 040474 81 LPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVL 122 (283)
Q Consensus 81 ~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~ 122 (283)
|.++++.|. +..|+|+|- |+||||.++-++-|+..
T Consensus 28 ~~~a~~~i~----~~~gkv~V~---G~GkSG~Igkk~Aa~L~ 62 (202)
T COG0794 28 FVRAVELIL----ECKGKVFVT---GVGKSGLIGKKFAARLA 62 (202)
T ss_pred HHHHHHHHH----hcCCcEEEE---cCChhHHHHHHHHHHHH
Confidence 444444443 335678874 99999999888877443
No 177
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=37.59 E-value=70 Score=27.84 Aligned_cols=83 Identities=16% Similarity=0.126 Sum_probs=46.5
Q ss_pred eEEcCCCCCcccH-HHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCc---hh--HhhhHHH
Q 040474 10 LIVGSCLQTPEDV-DKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDA---FD--LRMRLPA 83 (283)
Q Consensus 10 l~lG~~p~~~~~~-~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~---~~--~~~~~~~ 83 (283)
+..|++. +...+ +.|++++|+.||+.+.+.-. .-.....+.|.. .++.|+++-=+.... .+ ....+.+
T Consensus 47 v~~G~lg-~~~~l~~~l~~~~i~~vIDATHPfA~----~is~na~~a~~~-~~ipylR~eRp~~~~~~~~~~~~v~~~~e 120 (249)
T PF02571_consen 47 VRVGRLG-DEEGLAEFLRENGIDAVIDATHPFAA----EISQNAIEACRE-LGIPYLRFERPSWQPEPDDNWHYVDSYEE 120 (249)
T ss_pred EEECCCC-CHHHHHHHHHhCCCcEEEECCCchHH----HHHHHHHHHHhh-cCcceEEEEcCCcccCCCCeEEEeCCHHH
Confidence 7778873 55555 67789999999999976521 012223334444 578888774332211 11 1234566
Q ss_pred HHHHHHHHHHcCCCEEEE
Q 040474 84 VISKLYKAINRNGGVTYV 101 (283)
Q Consensus 84 ~~~~i~~~l~~~~~~VlV 101 (283)
+++.+.+. .+++||+
T Consensus 121 A~~~l~~~---~~~~ifl 135 (249)
T PF02571_consen 121 AAELLKEL---GGGRIFL 135 (249)
T ss_pred HHHHHhhc---CCCCEEE
Confidence 66654322 3366775
No 178
>PRK13938 phosphoheptose isomerase; Provisional
Probab=37.48 E-value=98 Score=25.83 Aligned_cols=40 Identities=23% Similarity=0.237 Sum_probs=27.8
Q ss_pred hHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHH
Q 040474 76 DLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMF 119 (283)
Q Consensus 76 ~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm 119 (283)
.+...+.++.+.+.+.+ .++++|++. |.|+|+.++...-+
T Consensus 26 ~~~~~~~~~a~~~~~~l-~~g~rI~i~---G~G~S~~~A~~fa~ 65 (196)
T PRK13938 26 VLLEAARAIGDRLIAGY-RAGARVFMC---GNGGSAADAQHFAA 65 (196)
T ss_pred hhHHHHHHHHHHHHHHH-HCCCEEEEE---eCcHHHHHHHHHHH
Confidence 34456777888888887 467777775 77888776655544
No 179
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=37.41 E-value=38 Score=29.89 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=18.7
Q ss_pred CCCChhHHHHHHHHHHHhCCCHHHHHHH
Q 040474 105 AGLGRAPAVALAYMFWVLGYKLNEAHQL 132 (283)
Q Consensus 105 ~G~~RS~~v~~ayLm~~~~~~~~~A~~~ 132 (283)
=|.||||+.+.+-|. .|++-+.|.++
T Consensus 165 PG~SRSGaTI~~~ll--lG~~r~~Aaef 190 (270)
T COG1968 165 PGTSRSGATISGGLL--LGLSREAAAEF 190 (270)
T ss_pred CCCCccHHHHHHHHH--cCCCHHHHHHH
Confidence 389999996666553 58887777654
No 180
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=37.22 E-value=57 Score=23.96 Aligned_cols=29 Identities=21% Similarity=0.150 Sum_probs=17.5
Q ss_pred cCCCEEEEEcCCCCC-hhHHHHHHHHHHHhCC
Q 040474 94 RNGGVTYVHCTAGLG-RAPAVALAYMFWVLGY 124 (283)
Q Consensus 94 ~~~~~VlVHC~~G~~-RS~~v~~ayLm~~~~~ 124 (283)
.++.+|+|+|..|.. ||. .++. .++..|.
T Consensus 62 ~~~~~vvvyc~~g~~~~s~-~~a~-~l~~~G~ 91 (110)
T cd01521 62 DKEKLFVVYCDGPGCNGAT-KAAL-KLAELGF 91 (110)
T ss_pred CCCCeEEEEECCCCCchHH-HHHH-HHHHcCC
Confidence 356789999998853 443 3333 3335554
No 181
>KOG2379 consensus Endonuclease MUS81 [Replication, recombination and repair]
Probab=36.43 E-value=3e+02 Score=26.55 Aligned_cols=114 Identities=15% Similarity=0.144 Sum_probs=62.2
Q ss_pred ccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhh---CCCeEEEEEeccCCCc--hhHhhhHHHHHHHHHHHHHc
Q 040474 20 EDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKT---YDDIQHIRAEIRDFDA--FDLRMRLPAVISKLYKAINR 94 (283)
Q Consensus 20 ~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~---~~~i~~~~ipi~D~~~--~~~~~~~~~~~~~i~~~l~~ 94 (283)
+....|++.||++++-+-++......+...+.+..++.. ..|+..++ ..|... .-+.-.-...++.+...+..
T Consensus 307 EQK~RLq~sGik~~iYlvE~~~~~n~~~~~eslktA~~~t~v~~GF~V~R--T~~l~et~s~l~y~tr~~~~~~~~~~~~ 384 (501)
T KOG2379|consen 307 EQKNRLQRSGIKRIIYLVEEDGNPNQSKPAESLKTAVTNTLVLEGFDVIR--TRDLGETVSKLAYLTRGLLQIYASLLLD 384 (501)
T ss_pred HHHHHHHhcCcceEEEEEeccCCcccccHHHHHHHHHHHHhhhcceEEEE--ecChhHHHHHHHHHhHHHHHHHHHhhcc
Confidence 344568999999999999886444444445555555433 34555554 333321 11110111122222222211
Q ss_pred C--------CCEEEEE---------------cCCCCChhHH-HHHHHHHHHhCCCHHHHHHHHHh
Q 040474 95 N--------GGVTYVH---------------CTAGLGRAPA-VALAYMFWVLGYKLNEAHQLLLS 135 (283)
Q Consensus 95 ~--------~~~VlVH---------------C~~G~~RS~~-v~~ayLm~~~~~~~~~A~~~v~~ 135 (283)
+ .-+...- |.-|..+|.. +.+.-||...||+.+.|++.+..
T Consensus 385 ~~d~~~~~~q~~~~~~~p~~~~~~f~~F~~~~~K~~~~TV~evf~~qLMqvkg~S~erAiAI~d~ 449 (501)
T KOG2379|consen 385 KEDYRERDDQLKGAMTVPSETELSFSAFQERLSKGKALTVGEVFARQLMQVKGMSLERAIAIADR 449 (501)
T ss_pred ccccccchhhhhcccCCCCcccccHHHHHHHhhhcccccHHHHHHHHHHhccCccHHHHHHHHHh
Confidence 1 0112222 3345567766 66666999999999999997654
No 182
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=36.35 E-value=1e+02 Score=29.00 Aligned_cols=101 Identities=16% Similarity=0.174 Sum_probs=58.8
Q ss_pred HhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccC---------CCchhHhhhHHHHHHHHHHHHHcCC
Q 040474 26 RQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRD---------FDAFDLRMRLPAVISKLYKAINRNG 96 (283)
Q Consensus 26 ~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D---------~~~~~~~~~~~~~~~~i~~~l~~~~ 96 (283)
.+.|..+|.+|....+ ...+++.......+..=.+|+.+ ....++ .-+..++.|+++.++.=
T Consensus 87 ~~~GADtiMDLStggd-------l~~iR~~il~~s~vpvGTVPiYqa~~~~~~k~~~~~~m--t~d~~~~~ie~qa~~GV 157 (431)
T PRK13352 87 VKYGADTIMDLSTGGD-------LDEIRRAIIEASPVPVGTVPIYQAAVEAARKYGSVVDM--TEDDLFDVIEKQAKDGV 157 (431)
T ss_pred HHcCCCeEeeccCCCC-------HHHHHHHHHHcCCCCCcChhHHHHHHHHHhcCCChhhC--CHHHHHHHHHHHHHhCC
Confidence 3899999999987764 34444443332233333344421 111111 12345666777765444
Q ss_pred CEEEEEcCC---------------C-CChhHHHHHHHHHHHhCC-----CHHHHHHHHHh
Q 040474 97 GVTYVHCTA---------------G-LGRAPAVALAYMFWVLGY-----KLNEAHQLLLS 135 (283)
Q Consensus 97 ~~VlVHC~~---------------G-~~RS~~v~~ayLm~~~~~-----~~~~A~~~v~~ 135 (283)
.-+-|||-- | +||-|++.++|++....- .+++.++..+.
T Consensus 158 DfmTiHcGi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~n~~ENPlye~fD~lLeI~~~ 217 (431)
T PRK13352 158 DFMTIHCGVTRETLERLKKSGRIMGIVSRGGSFLAAWMLHNNKENPLYEHFDYLLEILKE 217 (431)
T ss_pred CEEEEccchhHHHHHHHHhcCCccCeecCCHHHHHHHHHHcCCcCchHHHHHHHHHHHHH
Confidence 568999941 1 399999999999865543 24555555554
No 183
>PLN03244 alpha-amylase; Provisional
Probab=36.22 E-value=1.2e+02 Score=31.15 Aligned_cols=48 Identities=25% Similarity=0.351 Sum_probs=31.8
Q ss_pred ceEEEEeeCCCcceEEEeeccCCCCccccceee-----cCCCeEEEEEe--cCCc
Q 040474 160 ELVTFSWKGKNCTSVEISGIDIGWGQRMPLTFD-----KEQGLWILKRE--LPEG 207 (283)
Q Consensus 160 ~~v~f~w~~~g~~~v~l~Gsf~~W~~~~pl~~~-----~~~~~~~~~~~--l~~g 207 (283)
..+.|.-=.+|+.-..++|+||||+..--..+. .+-|.|.+.++ |..|
T Consensus 131 ~~~~~~ewapga~~~~~~gdfn~w~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~ 185 (872)
T PLN03244 131 HRVDFMDWAPGARYCAIIGDFNGWSPTENAAREGHFGHDDYGYWFIILEDKLREG 185 (872)
T ss_pred cCceeEeecCCcceeeeeccccCCCccccccccccccccccceEEEEechhhhcC
Confidence 345665445667999999999999855333331 23467887775 6655
No 184
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=36.16 E-value=27 Score=31.09 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=11.6
Q ss_pred cCCCEEEEEcCCCC
Q 040474 94 RNGGVTYVHCTAGL 107 (283)
Q Consensus 94 ~~~~~VlVHC~~G~ 107 (283)
...+.|+++|..|.
T Consensus 232 ~~~~~vI~yCgsG~ 245 (285)
T COG2897 232 DPDKEVIVYCGSGV 245 (285)
T ss_pred CCCCCEEEEcCCch
Confidence 45678999998886
No 185
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=35.57 E-value=66 Score=30.90 Aligned_cols=28 Identities=14% Similarity=0.362 Sum_probs=19.1
Q ss_pred cCCCEEEEEcCCCCChhHHHHHHHHHHHhCC
Q 040474 94 RNGGVTYVHCTAGLGRAPAVALAYMFWVLGY 124 (283)
Q Consensus 94 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 124 (283)
..+++++++|..|. || ..++.+|. ..|+
T Consensus 447 ~~~~~iivyC~~G~-rS-~~aa~~L~-~~G~ 474 (482)
T PRK01269 447 DQSKTYLLYCDRGV-MS-RLQALYLR-EQGF 474 (482)
T ss_pred CCCCeEEEECCCCH-HH-HHHHHHHH-HcCC
Confidence 34578999999996 87 44555553 4554
No 186
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=35.14 E-value=51 Score=20.05 Aligned_cols=11 Identities=18% Similarity=0.310 Sum_probs=9.0
Q ss_pred CCceEEEEEEE
Q 040474 205 PEGRYEYKYIV 215 (283)
Q Consensus 205 ~~g~y~ykf~v 215 (283)
.||.|...|..
T Consensus 11 ~PG~Y~l~~~a 21 (41)
T TIGR03769 11 KPGTYTLTVQA 21 (41)
T ss_pred CCeEEEEEEEE
Confidence 68888888876
No 187
>PRK07411 hypothetical protein; Validated
Probab=34.70 E-value=48 Score=30.87 Aligned_cols=28 Identities=32% Similarity=0.470 Sum_probs=19.0
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHHHhCCC
Q 040474 95 NGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125 (283)
Q Consensus 95 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 125 (283)
++.+|+|||..|. ||.. ++..| +..|++
T Consensus 341 ~d~~IVvyC~~G~-RS~~-aa~~L-~~~G~~ 368 (390)
T PRK07411 341 NGHRLIAHCKMGG-RSAK-ALGIL-KEAGIE 368 (390)
T ss_pred CCCeEEEECCCCH-HHHH-HHHHH-HHcCCC
Confidence 4578999999986 8844 44444 466654
No 188
>PHA03338 US22 family homolog; Provisional
Probab=33.82 E-value=44 Score=29.62 Aligned_cols=40 Identities=18% Similarity=0.308 Sum_probs=29.6
Q ss_pred EEEcCCCCChhHHHHHHH-HHHHhCCCHHHHHHHHHhhCCC
Q 040474 100 YVHCTAGLGRAPAVALAY-MFWVLGYKLNEAHQLLLSKRPC 139 (283)
Q Consensus 100 lVHC~~G~~RS~~v~~ay-Lm~~~~~~~~~A~~~v~~~r~~ 139 (283)
-+||.+|++=||.+.--| ++..++..++....+|...+..
T Consensus 160 pihC~agl~esgill~R~w~~ir~~~g~dav~RFviR~HGe 200 (344)
T PHA03338 160 PIHCRAGLGEIGILLGRLWLLIRQGADADAVARFVVRAHGE 200 (344)
T ss_pred EeccccccchhHHHHHHHHHHHHhhcCcchhhhhhhhccCc
Confidence 469999999888766655 4556677777777777777665
No 189
>PHA02540 61 DNA primase; Provisional
Probab=33.70 E-value=66 Score=29.41 Aligned_cols=38 Identities=13% Similarity=-0.013 Sum_probs=29.5
Q ss_pred EEEEEcCC-CCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCC
Q 040474 98 VTYVHCTA-GLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRP 138 (283)
Q Consensus 98 ~VlVHC~~-G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~ 138 (283)
....||.+ |.|.. ++.+||...++++.||++.+.+...
T Consensus 53 ~~~yhCFgCGa~Gd---~i~Flme~e~lsf~Eav~~la~~~g 91 (337)
T PHA02540 53 GGVFKCHNCGYHRP---FGNFLKDYEPDLYREYIMERFKERG 91 (337)
T ss_pred ceEEEecCCCCCCC---HHHHHHHhcCCChHHHHHHHHHHhC
Confidence 57999965 66554 6789999999999999996655444
No 190
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=33.31 E-value=41 Score=25.03 Aligned_cols=11 Identities=27% Similarity=0.730 Sum_probs=9.9
Q ss_pred EEEEEcCCCCC
Q 040474 98 VTYVHCTAGLG 108 (283)
Q Consensus 98 ~VlVHC~~G~~ 108 (283)
+||+-|.+|.|
T Consensus 3 kILlvCg~G~S 13 (104)
T PRK09590 3 KALIICAAGMS 13 (104)
T ss_pred EEEEECCCchH
Confidence 69999999994
No 191
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=32.93 E-value=45 Score=33.53 Aligned_cols=42 Identities=19% Similarity=0.299 Sum_probs=30.1
Q ss_pred EEEEeeCCCcceEEEeeccCCCCcc-ccceeecCCCeEEEEEe
Q 040474 162 VTFSWKGKNCTSVEISGIDIGWGQR-MPLTFDKEQGLWILKRE 203 (283)
Q Consensus 162 v~f~w~~~g~~~v~l~Gsf~~W~~~-~pl~~~~~~~~~~~~~~ 203 (283)
+.|.--.++++.+.++|.||+|+.. ..+....+.|.|.+.++
T Consensus 115 v~~~ewaP~a~~~s~~gd~n~W~~~~~~~~~k~~~g~w~i~l~ 157 (757)
T KOG0470|consen 115 VDFTEWAPLAEAVSLIGDFNNWNPSSNELKPKDDLGVWEIDLP 157 (757)
T ss_pred eeeeeecccccccccccccCCCCCcccccCcccccceeEEecC
Confidence 7787777888999999999999842 22221234678886665
No 192
>KOG2451 consensus Aldehyde dehydrogenase [Energy production and conversion]
Probab=32.60 E-value=30 Score=32.07 Aligned_cols=63 Identities=14% Similarity=0.205 Sum_probs=33.5
Q ss_pred EEEEEECCEeeecCCcceeecCCCCCcceEE-Eecc-CCCcchHHHh---hcccCCCCCCChHHHHHHHH
Q 040474 210 EYKYIVDGEWTCNKYELVSSPNKDGHVNNYV-QVDD-APSSVSEALR---NRLTSDDFDLTKDELHKIRA 274 (283)
Q Consensus 210 ~ykf~vdg~w~~d~~~~~~~~~~~G~~nn~i-~v~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 274 (283)
+=+=+|||+|+.+|++.+...+.-. .+-+| .|.+ ..+.+..++. +-..+ =.++|.-||..+.+
T Consensus 23 ~~~~~igGkWv~s~~~~tF~V~nPa-~geii~~V~~~~V~e~~kAI~aA~EaF~s-~~~~takeRs~lLr 90 (503)
T KOG2451|consen 23 RAQSYIGGKWVDSPDNKTFEVDNPA-NGEIIGKVADMTVEEAEKAIDAAYEAFKS-YRNLTAKERSALLR 90 (503)
T ss_pred chhccccceeeccCCCCeeeccCCC-ccchhhcccCCcHHHHHHHHHHHHHHHHH-HhhCCHHHHHHHHH
Confidence 4556799999999887766544322 22222 3433 2233332221 11122 34778888876554
No 193
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=31.92 E-value=1.5e+02 Score=22.55 Aligned_cols=48 Identities=27% Similarity=0.283 Sum_probs=22.9
Q ss_pred ceEEEEeeCCCcceEEEe-eccCCCCccccceeecCCCeEEEEEecCCceEEEE
Q 040474 160 ELVTFSWKGKNCTSVEIS-GIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYK 212 (283)
Q Consensus 160 ~~v~f~w~~~g~~~v~l~-Gsf~~W~~~~pl~~~~~~~~~~~~~~l~~g~y~yk 212 (283)
..|+|.|...+ ..|... +.... . .-+... +.+..|+.+.+ .||.|.|.
T Consensus 23 dTV~f~n~d~~-Hnv~~~~~~~p~-g-~~~~~s-~~g~~~~~tF~-~~G~Y~Y~ 71 (116)
T TIGR02375 23 DTVTFVPTDKG-HNVETIKGMIPE-G-AEAFKS-KINEEYTVTVT-EEGVYGVK 71 (116)
T ss_pred CEEEEEECCCC-eeEEEccCCCcC-C-cccccC-CCCCEEEEEeC-CCEEEEEE
Confidence 57888888775 555442 21111 0 001111 12345555555 56777664
No 194
>PRK10785 maltodextrin glucosidase; Provisional
Probab=31.22 E-value=2e+02 Score=28.49 Aligned_cols=48 Identities=15% Similarity=0.172 Sum_probs=32.7
Q ss_pred cceEEEeeccCCCCccccceeecCCC---eEEEEEecC--CceEEEEEEE--CCE
Q 040474 171 CTSVEISGIDIGWGQRMPLTFDKEQG---LWILKRELP--EGRYEYKYIV--DGE 218 (283)
Q Consensus 171 ~~~v~l~Gsf~~W~~~~pl~~~~~~~---~~~~~~~l~--~g~y~ykf~v--dg~ 218 (283)
.+.|.+.-.+.+-....+|.+....+ .|.+++.++ ++++.|.|.+ +|+
T Consensus 33 ~~~v~l~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~~~ 87 (598)
T PRK10785 33 PQRVMLRCEPDNEEYLLPMEKQRSQPQVTAWRASLPLNSGQPRRRYSFKLLWHDR 87 (598)
T ss_pred eEEEEEEEEcCCCEEEEEeEEeecCCCceEEEEEEEcCCCCceEEEEEEEEeCCE
Confidence 35777765555544567888765433 488888875 7788888888 554
No 195
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=31.16 E-value=50 Score=27.59 Aligned_cols=25 Identities=24% Similarity=0.145 Sum_probs=21.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhhC
Q 040474 113 VALAYMFWVLGYKLNEAHQLLLSKR 137 (283)
Q Consensus 113 v~~ayLm~~~~~~~~~A~~~v~~~r 137 (283)
-+=+.||..+|++-++|++++|..-
T Consensus 149 rAKglLM~~~g~sE~EAy~~lR~~A 173 (194)
T COG3707 149 RAKGLLMKRRGLSEEEAYKLLRRTA 173 (194)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4556799999999999999998743
No 196
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=31.08 E-value=35 Score=23.99 Aligned_cols=13 Identities=31% Similarity=0.705 Sum_probs=11.2
Q ss_pred EEEEEcCCCCChh
Q 040474 98 VTYVHCTAGLGRA 110 (283)
Q Consensus 98 ~VlVHC~~G~~RS 110 (283)
+|++-|.+|+|=|
T Consensus 1 kIlvvC~~Gi~TS 13 (90)
T PF02302_consen 1 KILVVCGSGIGTS 13 (90)
T ss_dssp EEEEEESSSSHHH
T ss_pred CEEEECCChHHHH
Confidence 6899999999755
No 197
>KOG0235 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=30.95 E-value=2.2e+02 Score=24.20 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=31.1
Q ss_pred HhhhHHHHHHHHHHHH---HcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHH
Q 040474 77 LRMRLPAVISKLYKAI---NRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQL 132 (283)
Q Consensus 77 ~~~~~~~~~~~i~~~l---~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~ 132 (283)
+...+..+..+..+.+ ...|..|+|+|.+..-| ++++...|++.++....
T Consensus 134 L~~~~~R~~~~~~e~i~~~~~~gk~Vli~aHGnsLR------~i~~~l~g~s~~~i~~~ 186 (214)
T KOG0235|consen 134 LKDCLDRLLPFWNEEIAKESKEGKNVLIVAHGNSLR------AIVKHLEGISDEAIKEL 186 (214)
T ss_pred HHHHHHHHHHHHHHhhhhhhcCCcEEEEEcCcHHHH------HHHHHHhcCCHhhhhhe
Confidence 4445566666666554 23578899998763333 35666778877666553
No 198
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=30.73 E-value=78 Score=20.62 Aligned_cols=26 Identities=27% Similarity=0.671 Sum_probs=13.9
Q ss_pred EEEEEecCCceEEEEEEE---CCEeeecC
Q 040474 198 WILKRELPEGRYEYKYIV---DGEWTCNK 223 (283)
Q Consensus 198 ~~~~~~l~~g~y~ykf~v---dg~w~~d~ 223 (283)
...-..||||+|.++-.+ +|.|..++
T Consensus 30 ~~~~~~L~~G~Y~l~V~a~~~~~~~~~~~ 58 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRAKDNNGKWSSDE 58 (66)
T ss_dssp EEEEES--SEEEEEEEEEEETTS-B-SS-
T ss_pred EEEEEeCCCEEEEEEEEEECCCCCcCccc
Confidence 333446999999987766 36676554
No 199
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=30.38 E-value=1.5e+02 Score=18.83 Aligned_cols=31 Identities=16% Similarity=0.255 Sum_probs=21.3
Q ss_pred CCChhHHHHHHHHHHHhCCCHHHHHHHHHhhC
Q 040474 106 GLGRAPAVALAYMFWVLGYKLNEAHQLLLSKR 137 (283)
Q Consensus 106 G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r 137 (283)
|++|. ++.+|.-+...|.+++.--..|+..|
T Consensus 18 gLd~e-tL~ici~L~e~GVnPeaLA~vI~elr 48 (48)
T PF12554_consen 18 GLDRE-TLSICIELCENGVNPEALAAVIKELR 48 (48)
T ss_pred CCCHH-HHHHHHHHHHCCCCHHHHHHHHHHhC
Confidence 89999 55555544489999986666666543
No 200
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=30.26 E-value=64 Score=23.76 Aligned_cols=19 Identities=21% Similarity=0.443 Sum_probs=13.2
Q ss_pred CCCEEEEEcCCCCChhHHH
Q 040474 95 NGGVTYVHCTAGLGRAPAV 113 (283)
Q Consensus 95 ~~~~VlVHC~~G~~RS~~v 113 (283)
+..+|+|||..+-.||...
T Consensus 61 ~~~~iv~yC~~~~~r~~~a 79 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSA 79 (113)
T ss_pred CCCeEEEEeecCCcchHHH
Confidence 3468999998444687554
No 201
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=30.02 E-value=58 Score=25.87 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHcCCCEEEEEcCC
Q 040474 83 AVISKLYKAINRNGGVTYVHCTA 105 (283)
Q Consensus 83 ~~~~~i~~~l~~~~~~VlVHC~~ 105 (283)
-++..+.++. ..|.+|||+|..
T Consensus 17 ~~c~L~~k~~-~~G~rvlI~~~d 38 (144)
T COG2927 17 AACRLAEKAW-RSGWRVLIQCED 38 (144)
T ss_pred HHHHHHHHHH-HcCCeEEEEeCC
Confidence 5788888888 568999999954
No 202
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=29.87 E-value=74 Score=25.00 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEcCCC
Q 040474 81 LPAVISKLYKAINRNGGVTYVHCTAG 106 (283)
Q Consensus 81 ~~~~~~~i~~~l~~~~~~VlVHC~~G 106 (283)
..-++..+.++. +.|.+|+|+|..-
T Consensus 15 ~~~~c~L~~ka~-~~g~rv~I~~~d~ 39 (142)
T PRK05728 15 EALLCELAEKAL-RAGWRVLVQCEDE 39 (142)
T ss_pred HHHHHHHHHHHH-HCCCEEEEEcCCH
Confidence 455788888887 5689999999553
No 203
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=29.60 E-value=1.2e+02 Score=27.38 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=16.3
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHHHhCC
Q 040474 96 GGVTYVHCTAGLGRAPAVALAYMFWVLGY 124 (283)
Q Consensus 96 ~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 124 (283)
+.+|+|+|..|-.||..++ +++...|+
T Consensus 74 ~~~vvvyC~~gG~RS~~aa--~~L~~~G~ 100 (311)
T TIGR03167 74 PPQPLLYCWRGGMRSGSLA--WLLAQIGF 100 (311)
T ss_pred CCcEEEEECCCChHHHHHH--HHHHHcCC
Confidence 3459999964435886543 33346666
No 204
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=29.39 E-value=1.8e+02 Score=23.86 Aligned_cols=73 Identities=21% Similarity=0.223 Sum_probs=44.3
Q ss_pred cccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhHHHH
Q 040474 5 FIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLPAV 84 (283)
Q Consensus 5 ~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~~~~ 84 (283)
...|..++... ..-+.+.|+++||+.||-=..+. =+|+++.... +++
T Consensus 5 ~~~Pd~~v~tv--~~i~~~~L~~~Gikgvi~DlDNT-------------------------Lv~wd~~~~t------pe~ 51 (175)
T COG2179 5 FLQPDKLVETV--FDITPDILKAHGIKGVILDLDNT-------------------------LVPWDNPDAT------PEL 51 (175)
T ss_pred hhChhHHHhhH--hhCCHHHHHHcCCcEEEEeccCc-------------------------eecccCCCCC------HHH
Confidence 34566666643 45678899999999987322111 1345332222 445
Q ss_pred HHHHHHHHHcCCCEEEEEcCCCCChhH
Q 040474 85 ISKLYKAINRNGGVTYVHCTAGLGRAP 111 (283)
Q Consensus 85 ~~~i~~~l~~~~~~VlVHC~~G~~RS~ 111 (283)
.+++.+. +..|-+|+|-...--+|-+
T Consensus 52 ~~W~~e~-k~~gi~v~vvSNn~e~RV~ 77 (175)
T COG2179 52 RAWLAEL-KEAGIKVVVVSNNKESRVA 77 (175)
T ss_pred HHHHHHH-HhcCCEEEEEeCCCHHHHH
Confidence 6777766 4677889998886555554
No 205
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=29.17 E-value=1.1e+02 Score=27.98 Aligned_cols=17 Identities=29% Similarity=0.538 Sum_probs=13.6
Q ss_pred CCCEEEEEcCCCCChhH
Q 040474 95 NGGVTYVHCTAGLGRAP 111 (283)
Q Consensus 95 ~~~~VlVHC~~G~~RS~ 111 (283)
.|..||.||.+|..+++
T Consensus 147 ~g~~ILThc~sg~lat~ 163 (339)
T PRK06036 147 DGDTVLTHCNAGRLACV 163 (339)
T ss_pred CCCEEEEecCCcccccc
Confidence 46789999999976653
No 206
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=29.13 E-value=1.1e+02 Score=28.24 Aligned_cols=30 Identities=10% Similarity=0.030 Sum_probs=17.4
Q ss_pred CcchHHHhhcccCCCCCCChHHHHHHHHHH
Q 040474 247 SSVSEALRNRLTSDDFDLTKDELHKIRAFL 276 (283)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (283)
|-+.+++-.-+--+-+.++|.....|+++.
T Consensus 332 DvTP~~lIt~iITE~Gv~~p~~~~~~~~~~ 361 (363)
T PRK05772 332 DVTPPKYITGIITEKGIIYPPFHKNIRKIL 361 (363)
T ss_pred cCCCHHHCCEEEccCCccCCchHHHHHHHh
Confidence 334456655566677777776444555554
No 207
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=29.13 E-value=2.9e+02 Score=25.81 Aligned_cols=101 Identities=15% Similarity=0.186 Sum_probs=56.1
Q ss_pred HhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCC------chhHhhhHHHHHHHHHHHHHcCCCEE
Q 040474 26 RQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFD------AFDLRMRLPAVISKLYKAINRNGGVT 99 (283)
Q Consensus 26 ~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~------~~~~~~~~~~~~~~i~~~l~~~~~~V 99 (283)
.+.|..+|.+|....+ ...+++.......+..=.+|+.+.- ..+ -..+...+.+.++.++.=.-+
T Consensus 88 ~~~GADtvMDLStGgd-------l~eiR~~ii~~s~vPvGTVPIYqA~~~~~~~~~~--~t~d~~~~~v~~qa~~GVdfm 158 (432)
T COG0422 88 IKWGADTVMDLSTGGD-------LHEIREWIIRNSPVPVGTVPIYQALEEVNGKVED--LTEDDFFDTVEKQAEQGVDFM 158 (432)
T ss_pred HHhCcceeEecccCCC-------HHHHHHHHHhcCCCCcCCchHHHHHHHHhcchhh--CCHHHHHHHHHHHHHhCCcEE
Confidence 3899999999987664 3444544333222333333332200 001 012334555566654433457
Q ss_pred EEEcC-----------C----C-CChhHHHHHHHHHHHhCC-----CHHHHHHHHHh
Q 040474 100 YVHCT-----------A----G-LGRAPAVALAYMFWVLGY-----KLNEAHQLLLS 135 (283)
Q Consensus 100 lVHC~-----------~----G-~~RS~~v~~ayLm~~~~~-----~~~~A~~~v~~ 135 (283)
-|||- . | +||-|+++++|++....- .+++-++..+.
T Consensus 159 TIHaGV~~~~~~~~~~~~R~~giVSRGGsi~a~Wml~~~~ENply~~fd~lleI~k~ 215 (432)
T COG0422 159 TIHAGVLLEYVPRTKRSGRVTGIVSRGGSIMAAWMLHNHKENPLYEHFDELLEIFKE 215 (432)
T ss_pred EeehhhhHHHHHHHHhcCceeeeeccchHHHHHHHHHcCCcCchhhhHHHHHHHHHH
Confidence 78881 1 1 399999999999865543 35566666654
No 208
>KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only]
Probab=28.64 E-value=2e+02 Score=24.92 Aligned_cols=72 Identities=13% Similarity=0.246 Sum_probs=42.8
Q ss_pred HHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEE
Q 040474 23 DKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVH 102 (283)
Q Consensus 23 ~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVH 102 (283)
+.++..||++|+.-+.+.|.+ .............+..+.+.+.. . +.+..+++.+...+...|-.+|+.
T Consensus 22 ~llk~~~i~~iiat~r~~e~a-----~~~l~~k~~~d~rvHii~Ldvt~---d---eS~~~~~~~V~~iVg~~GlnlLin 90 (249)
T KOG1611|consen 22 ELLKDKGIEVIIATARDPEKA-----ATELALKSKSDSRVHIIQLDVTC---D---ESIDNFVQEVEKIVGSDGLNLLIN 90 (249)
T ss_pred HHhcCCCcEEEEEecCChHHh-----hHHHHHhhccCCceEEEEEeccc---H---HHHHHHHHHHHhhcccCCceEEEe
Confidence 567899999999998766542 11111211122344454444422 2 234667777787776677788888
Q ss_pred cCC
Q 040474 103 CTA 105 (283)
Q Consensus 103 C~~ 105 (283)
|.+
T Consensus 91 NaG 93 (249)
T KOG1611|consen 91 NAG 93 (249)
T ss_pred ccc
Confidence 743
No 209
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=28.21 E-value=4e+02 Score=24.22 Aligned_cols=83 Identities=18% Similarity=0.088 Sum_probs=40.6
Q ss_pred HHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhC--CCeEEEEEeccCCCchhHhhhHHHHHHHHHHHHHcCCCEE
Q 040474 22 VDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTY--DDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVT 99 (283)
Q Consensus 22 ~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~--~~i~~~~ipi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~V 99 (283)
++..+++|....+++.... ..+++.+.+.+... .|... +-+.|....-....+.+.+..+.+.+ .+.-+|
T Consensus 120 i~~ak~~G~~v~~~l~~s~-----~~~~e~l~~~a~~~~~~Ga~~--i~i~DT~G~~~P~~v~~~v~~l~~~l-~~~i~i 191 (333)
T TIGR03217 120 IGMARELGMDTVGFLMMSH-----MTPPEKLAEQAKLMESYGADC--VYIVDSAGAMLPDDVRDRVRALKAVL-KPETQV 191 (333)
T ss_pred HHHHHHcCCeEEEEEEccc-----CCCHHHHHHHHHHHHhcCCCE--EEEccCCCCCCHHHHHHHHHHHHHhC-CCCceE
Confidence 3445666666666664332 12333333332221 13333 34555443332234455555555554 234679
Q ss_pred EEEcCCCCChhHH
Q 040474 100 YVHCTAGLGRAPA 112 (283)
Q Consensus 100 lVHC~~G~~RS~~ 112 (283)
-+||..-.|=+.+
T Consensus 192 g~H~HnnlGla~A 204 (333)
T TIGR03217 192 GFHAHHNLSLAVA 204 (333)
T ss_pred EEEeCCCCchHHH
Confidence 9999876654433
No 210
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=27.90 E-value=2.7e+02 Score=28.64 Aligned_cols=107 Identities=21% Similarity=0.376 Sum_probs=59.3
Q ss_pred cCCCEEEE--EcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC--CChhHHHHhHHhhhhccccc-----eEEE
Q 040474 94 RNGGVTYV--HCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF--PKLDAIKSATADILTGLRKE-----LVTF 164 (283)
Q Consensus 94 ~~~~~VlV--HC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~--pn~~~~~~~~~~~~~~~~~~-----~v~f 164 (283)
+++..||| |-.||+ |+++-|.+ |..+-...|-+. |=...-.|.-.+++.+|... -|++
T Consensus 142 dr~eSVLVSAHTSAGK----TVVAeYAI---------A~sLr~kQRVIYTSPIKALSNQKYREl~~EF~DVGLMTGDVTI 208 (1041)
T KOG0948|consen 142 DRGESVLVSAHTSAGK----TVVAEYAI---------AMSLREKQRVIYTSPIKALSNQKYRELLEEFKDVGLMTGDVTI 208 (1041)
T ss_pred cCCceEEEEeecCCCc----chHHHHHH---------HHHHHhcCeEEeeChhhhhcchhHHHHHHHhcccceeecceee
Confidence 46678888 667776 67777766 333323333222 43334456666677766442 2222
Q ss_pred EeeCCCcceEEEe----------ecc----CCCC--ccccceeecCCC-eEEEEEecCCceEEEEEEEC
Q 040474 165 SWKGKNCTSVEIS----------GID----IGWG--QRMPLTFDKEQG-LWILKRELPEGRYEYKYIVD 216 (283)
Q Consensus 165 ~w~~~g~~~v~l~----------Gsf----~~W~--~~~pl~~~~~~~-~~~~~~~l~~g~y~ykf~vd 216 (283)
. +.+...-++ ||- -+|- ..+...++++.| +|.-++-|-|....|-|+--
T Consensus 209 n---P~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSA 274 (1041)
T KOG0948|consen 209 N---PDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSA 274 (1041)
T ss_pred C---CCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEec
Confidence 1 111222111 221 1342 234444556655 79999999999999999976
No 211
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=27.72 E-value=55 Score=29.78 Aligned_cols=61 Identities=18% Similarity=0.172 Sum_probs=33.6
Q ss_pred ccccceEEEEeeCCCcceEEEeeccCCCC----ccccceeecCCCeEEEEEec----------CCceEEEEEEEC
Q 040474 156 GLRKELVTFSWKGKNCTSVEISGIDIGWG----QRMPLTFDKEQGLWILKREL----------PEGRYEYKYIVD 216 (283)
Q Consensus 156 ~~~~~~v~f~w~~~g~~~v~l~Gsf~~W~----~~~pl~~~~~~~~~~~~~~l----------~~g~y~ykf~vd 216 (283)
++...+..+.-....-+.+.+.||+.|-. +.+.+...+.-..+.-.+.+ ..|...|||+||
T Consensus 279 g~p~~~~~~~~~~lil~~~~I~GS~vG~~ket~E~Ldf~a~~~ik~~IE~v~~~~v~~a~erm~kgdV~yRfVvD 353 (360)
T KOG0023|consen 279 GLPEKPLKLDTFPLILGRKSIKGSIVGSRKETQEALDFVARGLIKSPIELVKLSEVNEAYERMEKGDVRYRFVVD 353 (360)
T ss_pred eCcCCcccccchhhhcccEEEEeeccccHHHHHHHHHHHHcCCCcCceEEEehhHHHHHHHHHHhcCeeEEEEEE
Confidence 33334444444444457789999998742 12222222212234433433 469999999998
No 212
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=27.68 E-value=1.5e+02 Score=20.10 Aligned_cols=44 Identities=23% Similarity=0.339 Sum_probs=23.7
Q ss_pred ceEEEeeccCCCCccccceeecCCCeEEEEEecCCceEEEEEEECCEe
Q 040474 172 TSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEW 219 (283)
Q Consensus 172 ~~v~l~Gsf~~W~~~~pl~~~~~~~~~~~~~~l~~g~y~ykf~vdg~w 219 (283)
-.|.+....++. ..-.....+|.|... .|+||.|..++.-.|..
T Consensus 17 a~V~l~~~~~~~---~~~~~Td~~G~f~~~-~l~~g~Y~l~v~~~g~~ 60 (82)
T PF13620_consen 17 ATVTLTDQDGGT---VYTTTTDSDGRFSFE-GLPPGTYTLRVSAPGYQ 60 (82)
T ss_dssp -EEEET--TTTE---CCEEE--TTSEEEEE-EE-SEEEEEEEEBTTEE
T ss_pred EEEEEEEeeCCC---EEEEEECCCceEEEE-ccCCEeEEEEEEECCcc
Confidence 455555443331 222333457888843 47889999888777764
No 213
>cd04864 LigD_Pol_like_1 LigD_Pol_like_1: Polymerase (Pol) domain of mostly bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 1. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=27.60 E-value=1.8e+02 Score=24.96 Aligned_cols=26 Identities=8% Similarity=0.238 Sum_probs=16.4
Q ss_pred HcCCCEEEEEcCCCCChhHHHHHHHHH
Q 040474 93 NRNGGVTYVHCTAGLGRAPAVALAYMF 119 (283)
Q Consensus 93 ~~~~~~VlVHC~~G~~RS~~v~~ayLm 119 (283)
++++++|+|=+..- +|..|+++.|=.
T Consensus 186 ~~R~grvfiDylqN-~~g~T~vapYS~ 211 (228)
T cd04864 186 AKRGDRVFLDIGRN-AYGQTAVAPYAV 211 (228)
T ss_pred HhCCCcEEEECccC-CCCCeEEecccc
Confidence 35578999999643 244456666643
No 214
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=27.55 E-value=3.6e+02 Score=23.50 Aligned_cols=82 Identities=17% Similarity=0.063 Sum_probs=41.4
Q ss_pred HHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhC--CCeEEEEEeccCCCchhHhhhHHHHHHHHHHHHHcCCCEEE
Q 040474 23 DKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTY--DDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTY 100 (283)
Q Consensus 23 ~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~--~~i~~~~ipi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~Vl 100 (283)
+..+++|....+++..-. +.+.+.+.+.+... .|...++ +.|....-....+.+.+..+.+.+ .++-++-
T Consensus 116 ~~ak~~G~~v~~~~~~a~-----~~~~~~~~~~~~~~~~~g~~~i~--l~DT~G~~~P~~v~~lv~~l~~~~-~~~~~i~ 187 (266)
T cd07944 116 KAIKEKGYEVFFNLMAIS-----GYSDEELLELLELVNEIKPDVFY--IVDSFGSMYPEDIKRIISLLRSNL-DKDIKLG 187 (266)
T ss_pred HHHHHCCCeEEEEEEeec-----CCCHHHHHHHHHHHHhCCCCEEE--EecCCCCCCHHHHHHHHHHHHHhc-CCCceEE
Confidence 445677887777765433 22333333333221 2444444 455443322234555555555544 2236789
Q ss_pred EEcCCCCChhHH
Q 040474 101 VHCTAGLGRAPA 112 (283)
Q Consensus 101 VHC~~G~~RS~~ 112 (283)
+||..-.|=+.+
T Consensus 188 ~H~Hn~~Gla~A 199 (266)
T cd07944 188 FHAHNNLQLALA 199 (266)
T ss_pred EEeCCCccHHHH
Confidence 999776554433
No 215
>KOG4088 consensus Translocon-associated complex TRAP, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.53 E-value=2.9e+02 Score=21.86 Aligned_cols=53 Identities=11% Similarity=0.320 Sum_probs=36.8
Q ss_pred ceEEEEeeCCC-cceEEEeeccCCCCccccceeecCCCeEEEEEec-----CCceEEEEEE
Q 040474 160 ELVTFSWKGKN-CTSVEISGIDIGWGQRMPLTFDKEQGLWILKREL-----PEGRYEYKYI 214 (283)
Q Consensus 160 ~~v~f~w~~~g-~~~v~l~Gsf~~W~~~~pl~~~~~~~~~~~~~~l-----~~g~y~ykf~ 214 (283)
.-+.|+.+..+ .+.+.+...++| ..+|..+..+.+.|++.-.| -.|+|+-+|+
T Consensus 43 fi~EftLqCsn~~~n~~l~Aev~G--k~~PVs~~~d~~kyQVSW~ldhK~a~agt~~vr~F 101 (167)
T KOG4088|consen 43 FITEFTLQCSNNPKNIQLTAEVNG--KLIPVSISDDTAKYQVSWTLDHKDAGAGTFNVRIF 101 (167)
T ss_pred EEEEEEEEeCCCCcceEEEEecCC--EEEeEEecCccceEEEEEEEeecccCCceEEEEEe
Confidence 34567777776 578888888886 56888887665666554333 3578888765
No 216
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=27.49 E-value=1.7e+02 Score=20.41 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=23.2
Q ss_pred ceEEEEeeCCCcceEEEe-eccCCCCccccceeecCCCeEEEEEecCCceEEEE
Q 040474 160 ELVTFSWKGKNCTSVEIS-GIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYK 212 (283)
Q Consensus 160 ~~v~f~w~~~g~~~v~l~-Gsf~~W~~~~pl~~~~~~~~~~~~~~l~~g~y~yk 212 (283)
..|+|.+.......+... |.+.++...-++. ..+..|+.+.. .||.|.|.
T Consensus 19 dtVt~~N~d~~~Hnv~~~~g~~~~~~~~~~~~--~~g~~~~~tf~-~~G~y~y~ 69 (83)
T TIGR02657 19 DTVTWINREAMPHNVHFVAGVLGEAALKGPMM--KKEQAYSLTFT-EAGTYDYH 69 (83)
T ss_pred CEEEEEECCCCCccEEecCCCCcccccccccc--CCCCEEEEECC-CCEEEEEE
Confidence 566666665544666543 3333322111221 12334555554 57766663
No 217
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=27.42 E-value=1.8e+02 Score=21.72 Aligned_cols=43 Identities=26% Similarity=0.258 Sum_probs=29.1
Q ss_pred CCeEEEEE-ecCCceEEEEEEEC----CEeeecC-CcceeecCCCCCcceEE
Q 040474 195 QGLWILKR-ELPEGRYEYKYIVD----GEWTCNK-YELVSSPNKDGHVNNYV 240 (283)
Q Consensus 195 ~~~~~~~~-~l~~g~y~ykf~vd----g~w~~d~-~~~~~~~~~~G~~nn~i 240 (283)
.+.-++++ .||||+|-...+-| |++..+. --| ..++|-.||.-
T Consensus 40 ~~~~~~~f~~lp~G~YAi~v~hD~N~NgklD~n~~GiP---~E~~GfSnn~~ 88 (112)
T PF09912_consen 40 GGTVTITFEDLPPGTYAIAVFHDENGNGKLDTNFIGIP---KEGYGFSNNPK 88 (112)
T ss_pred CCcEEEEECCCCCccEEEEEEEeCCCCCcCCcCCCCCc---ccCCeECCCCc
Confidence 46677777 69999999999987 3343332 223 23577777764
No 218
>PF01186 Lysyl_oxidase: Lysyl oxidase ; InterPro: IPR001695 Lysyl oxidase (1.4.3.13 from EC) (LOX) [] is an extracellular copper-dependent enzyme that catalyses the oxidative deamination of peptidyl lysine residues in precursors of various collagens and elastins, yielding alpha-aminoadipic-delta-semialdehyde. The deaminated lysines are then able to form semialdehyde cross-links, resulting in the formation of insoluble collagen and elastin fibres in the extracellular matrix []. The active site of LOX resides towards the C terminus: this region also binds a single copper atom in an octahedral coordination complex involving at least 3 His residues []. Four histidine residues are clustered in a central region of the enzyme. This region is thought to be involved in cooper-binding and is called the 'copper-talon' [].; GO: 0005507 copper ion binding, 0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor, 0055114 oxidation-reduction process
Probab=27.28 E-value=1.1e+02 Score=25.86 Aligned_cols=39 Identities=23% Similarity=0.351 Sum_probs=27.2
Q ss_pred CCeEEEEEecCCceEEEEEEECCEeeecCCcceeecCCCCCcceEEEe
Q 040474 195 QGLWILKRELPEGRYEYKYIVDGEWTCNKYELVSSPNKDGHVNNYVQV 242 (283)
Q Consensus 195 ~~~~~~~~~l~~g~y~ykf~vdg~w~~d~~~~~~~~~~~G~~nn~i~v 242 (283)
+.-|.=+-++|||.|.+|-.|+ |+.... +.--.||++..
T Consensus 148 dcQWiDITdvp~G~Y~l~V~vN------P~~~v~---Esd~~NN~~~c 186 (205)
T PF01186_consen 148 DCQWIDITDVPPGTYILQVTVN------PEYRVA---ESDFDNNVARC 186 (205)
T ss_pred CccceeecCCCCccEEEEEecC------Cccccc---cccccCCeEEE
Confidence 3457777789999999987776 444433 34467887765
No 219
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=27.16 E-value=57 Score=29.42 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=11.7
Q ss_pred CCCEEEEEcCCCCChh
Q 040474 95 NGGVTYVHCTAGLGRA 110 (283)
Q Consensus 95 ~~~~VlVHC~~G~~RS 110 (283)
++.+|+++|..|. ||
T Consensus 268 ~~~~iv~yC~sG~-~A 282 (320)
T PLN02723 268 LDSPIVASCGTGV-TA 282 (320)
T ss_pred CCCCEEEECCcHH-HH
Confidence 4678999998885 54
No 220
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=26.92 E-value=2.2e+02 Score=21.22 Aligned_cols=48 Identities=23% Similarity=0.466 Sum_probs=29.6
Q ss_pred cceEEEeeccCCCCcc--ccceeec-------CC--CeEEEEEecCC------ceEEE--EEEECCE
Q 040474 171 CTSVEISGIDIGWGQR--MPLTFDK-------EQ--GLWILKRELPE------GRYEY--KYIVDGE 218 (283)
Q Consensus 171 ~~~v~l~Gsf~~W~~~--~pl~~~~-------~~--~~~~~~~~l~~------g~y~y--kf~vdg~ 218 (283)
.+.|.|.=++++|... ++-.+.. .. ..|...+.|++ ++.+| +|.++|+
T Consensus 33 eK~V~VryT~D~W~t~~d~~a~y~~~~~~~~~~~~~d~F~F~i~l~~~~~~~~~~lef~I~Y~~~g~ 99 (113)
T PF03370_consen 33 EKEVTVRYTFDNWRTFSDVPASYVSSCPGPSPSGNYDRFSFSIPLPDLLPPEGGRLEFCIRYEVNGQ 99 (113)
T ss_dssp SEEEEEEEETSCTSSCCEEEEEEEE---EESTTSSEEEEEEEEE-SSE--T-TS-SEEEEEEEETTE
T ss_pred CeEEEEEEeeCCCCceeEEeeEEeccccCCCCCCcccEEEEEEECCcccccCCceEEEEEEEEeCCC
Confidence 4788888899999733 2322222 11 25888888864 34444 8889887
No 221
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=26.77 E-value=2.8e+02 Score=20.98 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=23.7
Q ss_pred ceEEEEeeCC-CcceEEEeeccCCCCccccceeecCCCeEEEEEecCCceEEEE
Q 040474 160 ELVTFSWKGK-NCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYK 212 (283)
Q Consensus 160 ~~v~f~w~~~-g~~~v~l~Gsf~~W~~~~pl~~~~~~~~~~~~~~l~~g~y~yk 212 (283)
..|+|.|... ....|...+. ..|+.... . ...+..|+.++. .||.|.|.
T Consensus 50 dTVtw~~~~d~~~HnV~s~~~-~~f~s~~~-~-~~~G~t~s~Tf~-~~G~Y~Y~ 99 (115)
T TIGR03102 50 TTVVWEWTGEGGGHNVVSDGD-GDLDESER-V-SEEGTTYEHTFE-EPGIYLYV 99 (115)
T ss_pred CEEEEEECCCCCCEEEEECCC-CCcccccc-c-cCCCCEEEEEec-CCcEEEEE
Confidence 5677777653 3355554321 12331111 1 112345666664 67777775
No 222
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=26.34 E-value=80 Score=22.09 Aligned_cols=17 Identities=29% Similarity=0.428 Sum_probs=12.5
Q ss_pred cCCCEEEEEcCCCCChhH
Q 040474 94 RNGGVTYVHCTAGLGRAP 111 (283)
Q Consensus 94 ~~~~~VlVHC~~G~~RS~ 111 (283)
.++.+|+++|..|. ||.
T Consensus 49 ~~~~~vvl~c~~g~-~a~ 65 (90)
T cd01524 49 PKDKEIIVYCAVGL-RGY 65 (90)
T ss_pred CCCCcEEEEcCCCh-hHH
Confidence 45678999999874 553
No 223
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=26.12 E-value=91 Score=31.00 Aligned_cols=21 Identities=10% Similarity=-0.080 Sum_probs=16.4
Q ss_pred EEEEEecCCc-eEEEEEEECCE
Q 040474 198 WILKRELPEG-RYEYKYIVDGE 218 (283)
Q Consensus 198 ~~~~~~l~~g-~y~ykf~vdg~ 218 (283)
+.+++-|.|. .|.|.+-+||+
T Consensus 455 ~~~~iyLsP~DYHR~H~Pv~G~ 476 (610)
T PRK09629 455 EFATVYLSPKDYHRVHMPLAGT 476 (610)
T ss_pred eEEEEEECCCeeEEEeecCCcE
Confidence 3577888887 58888888887
No 224
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=25.70 E-value=83 Score=24.53 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEEcCC
Q 040474 82 PAVISKLYKAINRNGGVTYVHCTA 105 (283)
Q Consensus 82 ~~~~~~i~~~l~~~~~~VlVHC~~ 105 (283)
.-+++.+.++. ++|.+|+|+|..
T Consensus 16 ~~~c~L~~k~~-~~g~rv~V~~~d 38 (137)
T PF04364_consen 16 RFACRLAEKAY-RQGQRVLVLCPD 38 (137)
T ss_dssp HHHHHHHHHHH-HTT--EEEE-SS
T ss_pred HHHHHHHHHHH-HcCCeEEEEeCC
Confidence 44678888887 568899999964
No 225
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=25.57 E-value=63 Score=23.84 Aligned_cols=19 Identities=16% Similarity=0.329 Sum_probs=12.8
Q ss_pred EEEEEcCCCCChhHHHHHHHH
Q 040474 98 VTYVHCTAGLGRAPAVALAYM 118 (283)
Q Consensus 98 ~VlVHC~~G~~RS~~v~~ayL 118 (283)
+||+-|.+| .|.++++--+
T Consensus 2 ~Ill~C~~G--aSSs~la~km 20 (99)
T cd05565 2 NVLVLCAGG--GTSGLLANAL 20 (99)
T ss_pred EEEEECCCC--CCHHHHHHHH
Confidence 599999777 5555555443
No 226
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=25.51 E-value=97 Score=24.84 Aligned_cols=25 Identities=8% Similarity=0.060 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEcCCC
Q 040474 81 LPAVISKLYKAINRNGGVTYVHCTAG 106 (283)
Q Consensus 81 ~~~~~~~i~~~l~~~~~~VlVHC~~G 106 (283)
+.-+++.+.+++ .+|.+|+|+|...
T Consensus 15 ~~~acrL~~Ka~-~~G~rv~I~~~d~ 39 (154)
T PRK06646 15 LKSILLLIEKCY-YSDLKSVILTADA 39 (154)
T ss_pred HHHHHHHHHHHH-HcCCEEEEEcCCH
Confidence 455788888888 5689999999654
No 227
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=25.32 E-value=2.4e+02 Score=19.70 Aligned_cols=46 Identities=17% Similarity=0.246 Sum_probs=27.4
Q ss_pred CCCcceEEEeeccCCCCccccceeecCCCeE-EEEEecCCc-eEEEEEEE----CCEeeecC
Q 040474 168 GKNCTSVEISGIDIGWGQRMPLTFDKEQGLW-ILKRELPEG-RYEYKYIV----DGEWTCNK 223 (283)
Q Consensus 168 ~~g~~~v~l~Gsf~~W~~~~pl~~~~~~~~~-~~~~~l~~g-~y~ykf~v----dg~w~~d~ 223 (283)
.+..-.+.+.|.-+. . .+... ..+-.|++| .|.|.+.+ ||+-....
T Consensus 9 vPadAkl~v~G~~t~--------~--~G~~R~F~T~~L~~G~~y~Y~v~a~~~~dG~~~t~~ 60 (75)
T TIGR03000 9 LPADAKLKVDGKETN--------G--TGTVRTFTTPPLEAGKEYEYTVTAEYDRDGRILTRT 60 (75)
T ss_pred eCCCCEEEECCeEcc--------c--CccEEEEECCCCCCCCEEEEEEEEEEecCCcEEEEE
Confidence 334466777764332 1 12233 335579999 59999998 88654443
No 228
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=25.12 E-value=1.5e+02 Score=21.97 Aligned_cols=14 Identities=29% Similarity=0.759 Sum_probs=12.2
Q ss_pred CEEEEEcCCCCChh
Q 040474 97 GVTYVHCTAGLGRA 110 (283)
Q Consensus 97 ~~VlVHC~~G~~RS 110 (283)
.+||+-|.+|.|=|
T Consensus 4 kkIllvC~~G~sTS 17 (106)
T PRK10499 4 KHIYLFCSAGMSTS 17 (106)
T ss_pred CEEEEECCCCccHH
Confidence 47999999999866
No 229
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=25.09 E-value=2.5e+02 Score=24.03 Aligned_cols=56 Identities=11% Similarity=0.059 Sum_probs=27.2
Q ss_pred EeccCCCchhH-hhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhC
Q 040474 67 AEIRDFDAFDL-RMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLG 123 (283)
Q Consensus 67 ipi~D~~~~~~-~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~ 123 (283)
.|++|...+.- ....+.+++.|.+.- +..+..+.-|-+|==++-++.++|.+..+|
T Consensus 82 ~~l~DI~t~~d~~~~~~~I~~~i~~l~-~~~~~~lh~sIAGGRKtMs~~~~~a~sL~g 138 (224)
T PF09623_consen 82 LPLDDIRTEEDNEAFADFIYRLIRELK-QDPGRRLHVSIAGGRKTMSFYAGYAASLFG 138 (224)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHh-hCCCCeEEEEecCChHHHHHHHHHHHHHcC
Confidence 34555444332 222333444444443 333456666777733454466666654444
No 230
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=24.97 E-value=1.2e+02 Score=26.03 Aligned_cols=43 Identities=23% Similarity=0.249 Sum_probs=36.7
Q ss_pred eEEEeccCCCcch-HHHhhcccCCCCCCChHHHHHHHHHHhhCC
Q 040474 238 NYVQVDDAPSSVS-EALRNRLTSDDFDLTKDELHKIRAFLEACP 280 (283)
Q Consensus 238 n~i~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (283)
..|.|+++.+... ..++..+++-+.+||.+|...+.+++.++.
T Consensus 157 ~~i~vG~gegQVpL~kL~~~l~KLp~~lt~~ev~~v~~RL~AL~ 200 (224)
T PF13829_consen 157 HDIIVGNGEGQVPLRKLQKTLMKLPRNLTKAEVDAVNKRLRALG 200 (224)
T ss_pred EEEEecCCCCceeHHHHHHHHHhCCccCCHHHHHHHHHHHHHhc
Confidence 4488888766665 678888999999999999999999999886
No 231
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=24.94 E-value=1.1e+02 Score=22.20 Aligned_cols=16 Identities=19% Similarity=0.374 Sum_probs=13.3
Q ss_pred CEEEEEcCCCCChhHH
Q 040474 97 GVTYVHCTAGLGRAPA 112 (283)
Q Consensus 97 ~~VlVHC~~G~~RS~~ 112 (283)
.+||+-|-+|+|=|-.
T Consensus 2 ~KIL~aCG~GvgSS~~ 17 (93)
T COG3414 2 IKILAACGNGVGSSTM 17 (93)
T ss_pred cEEEEECCCCccHHHH
Confidence 3799999999988743
No 232
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=24.81 E-value=3.3e+02 Score=23.74 Aligned_cols=19 Identities=26% Similarity=0.085 Sum_probs=13.7
Q ss_pred HhCCCHHHHHHHHHhhCCC
Q 040474 121 VLGYKLNEAHQLLLSKRPC 139 (283)
Q Consensus 121 ~~~~~~~~A~~~v~~~r~~ 139 (283)
..|+++++..+.+...+..
T Consensus 133 ~~G~s~~eI~~~l~~~~~~ 151 (275)
T TIGR00762 133 EEGKSLEEILAKLEELRER 151 (275)
T ss_pred HcCCCHHHHHHHHHHHHhh
Confidence 4577888888877776654
No 233
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=24.52 E-value=1.7e+02 Score=26.72 Aligned_cols=9 Identities=33% Similarity=0.859 Sum_probs=8.4
Q ss_pred EEEEEcCCC
Q 040474 98 VTYVHCTAG 106 (283)
Q Consensus 98 ~VlVHC~~G 106 (283)
.||.||.+|
T Consensus 149 ~ILThcnsg 157 (331)
T TIGR00512 149 RVLTHCNTG 157 (331)
T ss_pred eEEeecCCc
Confidence 799999988
No 234
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=24.50 E-value=3e+02 Score=27.59 Aligned_cols=60 Identities=18% Similarity=0.269 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHcCCCEEEEEcCCC-CChhHH-HHHHHHHHHhCCCHHHHHHHHHhhCCC
Q 040474 80 RLPAVISKLYKAINRNGGVTYVHCTAG-LGRAPA-VALAYMFWVLGYKLNEAHQLLLSKRPC 139 (283)
Q Consensus 80 ~~~~~~~~i~~~l~~~~~~VlVHC~~G-~~RS~~-v~~ayLm~~~~~~~~~A~~~v~~~r~~ 139 (283)
.+.+-.+.|-+.|.+.++.+||+=-++ +.|-.. +..-.+....+++-.+|.++++..|..
T Consensus 576 ~l~e~~d~v~~~L~~~~g~iYvCGd~~~Ma~dV~~~L~~i~~~~g~~~~~ea~~~lk~lk~~ 637 (645)
T KOG1158|consen 576 RLREYADEVWELLKKEGGHIYVCGDAKGMAKDVQDALVRILAKDGGLSEEEAEKYLKQLKKS 637 (645)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEecCCccchHHHHHHHHHHHHhhCCccHHHHHHHHHHhhhc
Confidence 355566777777766688999988777 877766 455556777789999999999987754
No 235
>KOG4836 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.33 E-value=3.4e+02 Score=22.98 Aligned_cols=40 Identities=23% Similarity=0.266 Sum_probs=24.6
Q ss_pred EEEcCCCCChhHHHHHHHHHHHhCC-----CHHHHHHHHHhhCCC
Q 040474 100 YVHCTAGLGRAPAVALAYMFWVLGY-----KLNEAHQLLLSKRPC 139 (283)
Q Consensus 100 lVHC~~G~~RS~~v~~ayLm~~~~~-----~~~~A~~~v~~~r~~ 139 (283)
++--.+|+|=+|+++.+.+-....- =.++|+++++.--.+
T Consensus 82 ~~iVI~GiGv~g~~iY~i~~ElFs~~sp~~ifn~Al~~v~~~~~~ 126 (215)
T KOG4836|consen 82 YIIVIAGIGVTGAFIYAIFGELFSSSSPQTIFNRALELVRANPEV 126 (215)
T ss_pred eeeeeeeccHHHHhHHHHHHHHhcCCCcHHHHHHHHHHHhcChHH
Confidence 4444578888887776665433321 167888888765443
No 236
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=24.06 E-value=1.2e+02 Score=24.98 Aligned_cols=29 Identities=14% Similarity=0.116 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHHHHhCC
Q 040474 95 NGGVTYVHCTAGLGRAPAVALAYMFWVLGY 124 (283)
Q Consensus 95 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 124 (283)
..|-|.|+|-.|+|.| |.++...++..|.
T Consensus 20 ~~Gli~VYtGdGKGKT-TAAlGlalRAaG~ 48 (178)
T PRK07414 20 IEGLVQVFTSSQRNFF-TSVMAQALRIAGQ 48 (178)
T ss_pred CCCEEEEEeCCCCCch-HHHHHHHHHHhcC
Confidence 4678999999999999 5555555544443
No 237
>PLN02960 alpha-amylase
Probab=24.03 E-value=1.7e+02 Score=30.39 Aligned_cols=54 Identities=13% Similarity=0.198 Sum_probs=33.2
Q ss_pred cceeecCCCeEEEEEe-cCCceEEEEEEEC---CE-eeecCCcceeecCCCCCcceEEEec
Q 040474 188 PLTFDKEQGLWILKRE-LPEGRYEYKYIVD---GE-WTCNKYELVSSPNKDGHVNNYVQVD 243 (283)
Q Consensus 188 pl~~~~~~~~~~~~~~-l~~g~y~ykf~vd---g~-w~~d~~~~~~~~~~~G~~nn~i~v~ 243 (283)
.|.+. ..|.|...++ +++|. .|||.|+ |. .+.||-+-....+..|..-++|+..
T Consensus 318 ~~~k~-~~gw~~~~ip~~~hG~-~Yky~v~~~~g~~~~vdpyA~~~qp~~~~~~~~~v~~d 376 (897)
T PLN02960 318 ETRKG-RKAWLKKYIPAIPHGS-KYRVYFNTPDGPLERVPAWATYVLPDPDGKQWYAIHWE 376 (897)
T ss_pred eeeec-CCcEEEEEccCCCCCC-EEEEEEEeCCCceEECCCcceeEeecCCCccceEEEeC
Confidence 34443 4678888775 67784 6777775 54 4667766656555555544555444
No 238
>COG3828 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.67 E-value=62 Score=27.13 Aligned_cols=18 Identities=22% Similarity=0.780 Sum_probs=15.7
Q ss_pred EEEEEEECCEeeecCCcc
Q 040474 209 YEYKYIVDGEWTCNKYEL 226 (283)
Q Consensus 209 y~ykf~vdg~w~~d~~~~ 226 (283)
-.|.|++.|+|+.-|-|.
T Consensus 98 ~~yqf~igGqwvaHPgn~ 115 (239)
T COG3828 98 VDYQFIIGGQWVAHPGNQ 115 (239)
T ss_pred cceEEEeCCEEecCCCcC
Confidence 468999999999999884
No 239
>KOG0045 consensus Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily) [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.66 E-value=78 Score=31.47 Aligned_cols=25 Identities=20% Similarity=0.542 Sum_probs=20.3
Q ss_pred CCceEEEEEEECCEe---eecCCcceee
Q 040474 205 PEGRYEYKYIVDGEW---TCNKYELVSS 229 (283)
Q Consensus 205 ~~g~y~ykf~vdg~w---~~d~~~~~~~ 229 (283)
..|.|++||.++|+| +.|..-|+..
T Consensus 115 yaGif~f~~w~~G~W~~VvIDD~LP~~~ 142 (612)
T KOG0045|consen 115 YAGIFHFRFWQNGEWVEVVIDDRLPTSN 142 (612)
T ss_pred cceEEEEEEEeCCeEEEEEeeeecceEc
Confidence 469999999999999 4477777663
No 240
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=23.60 E-value=2.8e+02 Score=19.92 Aligned_cols=59 Identities=19% Similarity=0.235 Sum_probs=27.9
Q ss_pred ceEEEEeeCCCcceEEEeeccCCCCccccceeecCCCeEEEEEecCCc-eEEEEEEECCEe--eecC
Q 040474 160 ELVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEG-RYEYKYIVDGEW--TCNK 223 (283)
Q Consensus 160 ~~v~f~w~~~g~~~v~l~Gsf~~W~~~~pl~~~~~~~~~~~~~~l~~g-~y~ykf~vdg~w--~~d~ 223 (283)
..|+|.+.......+.+.. ..|.......+.. ... ....+.|| .|.+.|--.|.+ .|.|
T Consensus 25 ~tV~~~n~~~~~Hnv~~~~--~~~~~~~~~~~~~-~~~--~~~~~~~G~~~~~tF~~~G~y~y~C~P 86 (99)
T PF00127_consen 25 DTVTFVNNDSMPHNVVFVA--DGMPAGADSDYVP-PGD--SSPLLAPGETYSVTFTKPGTYEYYCTP 86 (99)
T ss_dssp EEEEEEEESSSSBEEEEET--TSSHTTGGHCHHS-TTC--EEEEBSTTEEEEEEEESSEEEEEEETT
T ss_pred CEEEEEECCCCCceEEEec--ccccccccccccC-ccc--cceecCCCCEEEEEeCCCeEEEEEcCC
Confidence 4677777655446665554 2321111111111 111 33345566 466666666653 5565
No 241
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=23.38 E-value=5.2e+02 Score=23.47 Aligned_cols=82 Identities=20% Similarity=0.101 Sum_probs=39.9
Q ss_pred HHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhC--CCeEEEEEeccCCCchhHhhhHHHHHHHHHHHHHcCCCEEE
Q 040474 23 DKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTY--DDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTY 100 (283)
Q Consensus 23 ~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~--~~i~~~~ipi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~Vl 100 (283)
+..+++|....+++.... ..+.+.+.+.+... .|... +-+.|....-....+.+.+..+.+.+ .++-+|-
T Consensus 122 ~~ak~~G~~v~~~l~~a~-----~~~~e~l~~~a~~~~~~Ga~~--i~i~DT~G~~~P~~v~~~v~~l~~~l-~~~i~ig 193 (337)
T PRK08195 122 GLARELGMDTVGFLMMSH-----MAPPEKLAEQAKLMESYGAQC--VYVVDSAGALLPEDVRDRVRALRAAL-KPDTQVG 193 (337)
T ss_pred HHHHHCCCeEEEEEEecc-----CCCHHHHHHHHHHHHhCCCCE--EEeCCCCCCCCHHHHHHHHHHHHHhc-CCCCeEE
Confidence 445566766666665332 12333333322221 23333 34556443332234444555555444 2356789
Q ss_pred EEcCCCCChhHH
Q 040474 101 VHCTAGLGRAPA 112 (283)
Q Consensus 101 VHC~~G~~RS~~ 112 (283)
+||..-.|=+.+
T Consensus 194 ~H~HnnlGla~A 205 (337)
T PRK08195 194 FHGHNNLGLGVA 205 (337)
T ss_pred EEeCCCcchHHH
Confidence 999876654433
No 242
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=23.36 E-value=1.2e+02 Score=27.46 Aligned_cols=55 Identities=16% Similarity=0.126 Sum_probs=30.3
Q ss_pred CcccHHHHHhcCCcEEEEcCcCCCCCccCC--C-hHHHHHHhhhCCCeEEEEEeccCC
Q 040474 18 TPEDVDKLRQIGVKTIFCLQQDPDLEYFGV--D-IIAIQEYAKTYDDIQHIRAEIRDF 72 (283)
Q Consensus 18 ~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~--~-~~~~~~~~~~~~~i~~~~ipi~D~ 72 (283)
+.+-++.|.+.|+++|+-++...-...... + ..++.+.+.+..|..|.++|....
T Consensus 245 t~~~l~~L~~~g~k~iiv~pigFvsDhlETL~Eid~e~~e~~~~~Gg~~y~rip~lN~ 302 (320)
T COG0276 245 TDDLLEELGEKGVKKIIVVPIGFVSDHLETLYEIDHEYRELAEEAGGKKYVRIPCLND 302 (320)
T ss_pred HHHHHHHHHhcCCCeEEEECCchhhhhHHHHHHHHHHHHHHHHHhCCccEEecCCCCC
Confidence 455667777788888887765542111100 0 122334444444578888887643
No 243
>cd04866 LigD_Pol_like_3 LigD_Pol_like_3: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 3. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated repair DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=23.34 E-value=2.3e+02 Score=24.26 Aligned_cols=26 Identities=8% Similarity=0.155 Sum_probs=16.7
Q ss_pred HcCCCEEEEEcCCCCChhHHHHHHHHH
Q 040474 93 NRNGGVTYVHCTAGLGRAPAVALAYMF 119 (283)
Q Consensus 93 ~~~~~~VlVHC~~G~~RS~~v~~ayLm 119 (283)
++++++|+|=+..- +|..|+++.|=.
T Consensus 181 ~~R~gkVfiDylqN-~~g~T~vapYS~ 206 (223)
T cd04866 181 KNRHNRLYLDYVQH-AEGKTIIAPYSA 206 (223)
T ss_pred HhCCCCEEEECccC-CCCCeEEecccc
Confidence 34578999998653 355556666643
No 244
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=22.63 E-value=78 Score=23.70 Aligned_cols=19 Identities=32% Similarity=0.910 Sum_probs=15.3
Q ss_pred C-CceEEEEEEECCEeeecCC
Q 040474 205 P-EGRYEYKYIVDGEWTCNKY 224 (283)
Q Consensus 205 ~-~g~y~ykf~vdg~w~~d~~ 224 (283)
| .|-|+|.|. +|+|+++-+
T Consensus 67 pisG~~hf~~~-~~~W~~~r~ 86 (109)
T PF01491_consen 67 PISGPFHFDYD-DGKWIDTRD 86 (109)
T ss_dssp TTTEEEEEEEE-SSSEEETTT
T ss_pred ccCCceEEEEc-CCEEEECCC
Confidence 5 788888888 999997654
No 245
>cd04863 MtLigD_Pol_like MtLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Mycobacterium tuberculosis (Mt)LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. MtLigD is monomeric and contains an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The MtLigD Pol domain is stimulated by manganese, is error-prone, and prefers adding rNTPs to dNTPs in vitro. The MtLigD Pol domain has been shown to prefer DNA gapped substrates
Probab=22.58 E-value=2.5e+02 Score=24.21 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=15.9
Q ss_pred cCCCEEEEEcCCCCChhHHHHHHHHH
Q 040474 94 RNGGVTYVHCTAGLGRAPAVALAYMF 119 (283)
Q Consensus 94 ~~~~~VlVHC~~G~~RS~~v~~ayLm 119 (283)
+++++|+|=|..- +|..|+++.|=.
T Consensus 190 ~R~grvfiDylqN-~~g~T~vapYS~ 214 (231)
T cd04863 190 LRAGKVFVDWSQN-DAAKTTIAPYSL 214 (231)
T ss_pred hCCCcEEEECccC-CCCCeEEecccc
Confidence 4578999998553 344456666643
No 246
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=22.47 E-value=1.7e+02 Score=26.99 Aligned_cols=28 Identities=29% Similarity=0.463 Sum_probs=18.7
Q ss_pred cCCCEEEEEcCCCCChhHHHHHHHHHHHhCC
Q 040474 94 RNGGVTYVHCTAGLGRAPAVALAYMFWVLGY 124 (283)
Q Consensus 94 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 124 (283)
.++.+|+|+|..|. ||.. ++. +++..|.
T Consensus 55 ~~~~~IvvyC~~G~-rs~~-aa~-~L~~~G~ 82 (376)
T PRK08762 55 DRDREIVLICASGT-RSAH-AAA-TLRELGY 82 (376)
T ss_pred CCCCeEEEEcCCCc-HHHH-HHH-HHHHcCC
Confidence 45678999999985 7753 333 4446665
No 247
>PF11256 DUF3055: Protein of unknown function (DUF3055); InterPro: IPR021415 This family of proteins with unknown function appear to be restricted to Firmicutes.
Probab=22.44 E-value=61 Score=23.02 Aligned_cols=35 Identities=29% Similarity=0.477 Sum_probs=26.8
Q ss_pred CEEEEEcCCCCChhHHHH------HHHHHHHhCCCHHHHHHH
Q 040474 97 GVTYVHCTAGLGRAPAVA------LAYMFWVLGYKLNEAHQL 132 (283)
Q Consensus 97 ~~VlVHC~~G~~RS~~v~------~ayLm~~~~~~~~~A~~~ 132 (283)
||.||-|... ||++.+. -.||-...+++.++|-++
T Consensus 34 GK~LV~~mQt-gr~ailg~dDlee~gyl~~~f~l~~eea~eL 74 (81)
T PF11256_consen 34 GKPLVLCMQT-GRFAILGPDDLEEPGYLEHAFGLSEEEAEEL 74 (81)
T ss_pred CceEEEEecC-CceEEEChhhcccccHHHHHhCCCHHHHHHH
Confidence 5789999886 6886554 368888889998888654
No 248
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=22.29 E-value=2.3e+02 Score=18.54 Aligned_cols=34 Identities=26% Similarity=0.374 Sum_probs=22.6
Q ss_pred CCCeEEEEEecCCceEEEEEEE--CCEeeecCCccee
Q 040474 194 EQGLWILKRELPEGRYEYKYIV--DGEWTCNKYELVS 228 (283)
Q Consensus 194 ~~~~~~~~~~l~~g~y~ykf~v--dg~w~~d~~~~~~ 228 (283)
++|.+.. -.|++|.|..+... +|--..++.....
T Consensus 25 ~~G~~~f-~~L~~G~Y~l~E~~aP~GY~~~~~~~~~~ 60 (70)
T PF05738_consen 25 ENGKYTF-KNLPPGTYTLKETKAPDGYQLDDTPYEFT 60 (70)
T ss_dssp TTSEEEE-EEEESEEEEEEEEETTTTEEEEECEEEEE
T ss_pred CCCEEEE-eecCCeEEEEEEEECCCCCEECCCceEEE
Confidence 4566553 36899999999988 6765555444434
No 249
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=22.27 E-value=1e+02 Score=23.97 Aligned_cols=27 Identities=37% Similarity=0.794 Sum_probs=13.4
Q ss_pred eEEcCCCCCcccHHHHHhcCCcEEEEcC
Q 040474 10 LIVGSCLQTPEDVDKLRQIGVKTIFCLQ 37 (283)
Q Consensus 10 l~lG~~p~~~~~~~~L~~~gI~~Vv~l~ 37 (283)
+++|+.+ ..++.+.|+++||..++...
T Consensus 87 vivGG~~-~~~~~~~l~~~Gvd~~~~~g 113 (132)
T TIGR00640 87 VVVGGVI-PPQDFDELKEMGVAEIFGPG 113 (132)
T ss_pred EEEeCCC-ChHhHHHHHHCCCCEEECCC
Confidence 4455442 33445555555555555443
No 250
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=21.94 E-value=56 Score=24.40 Aligned_cols=24 Identities=38% Similarity=1.171 Sum_probs=17.3
Q ss_pred eEEEEEecCCceEEEEEEECCEeeecCC
Q 040474 197 LWILKRELPEGRYEYKYIVDGEWTCNKY 224 (283)
Q Consensus 197 ~~~~~~~l~~g~y~ykf~vdg~w~~d~~ 224 (283)
.|.+. |.|-|+|.|. +|.|+.+-+
T Consensus 59 IWlas---~sG~~hf~~~-~~~W~~~r~ 82 (105)
T PRK00446 59 LWLAA---KSGGFHFDYK-DGEWICDRS 82 (105)
T ss_pred eeEec---CCCCccceec-CCeEEECCC
Confidence 56655 4687888885 999997643
No 251
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=21.86 E-value=62 Score=23.80 Aligned_cols=18 Identities=39% Similarity=0.853 Sum_probs=13.6
Q ss_pred CceEEEEEEECCEeeecCC
Q 040474 206 EGRYEYKYIVDGEWTCNKY 224 (283)
Q Consensus 206 ~g~y~ykf~vdg~w~~d~~ 224 (283)
.|-|+|.| ++|+|++.-+
T Consensus 66 sGp~hfd~-~~~~Wi~~r~ 83 (97)
T TIGR03422 66 SGPKRYDY-VNGEWIYLRD 83 (97)
T ss_pred CCCcceee-cCCEEEECCC
Confidence 57788888 4899998543
No 252
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=21.82 E-value=54 Score=24.47 Aligned_cols=19 Identities=32% Similarity=1.034 Sum_probs=13.7
Q ss_pred CCceEEEEEEECCEeeecCC
Q 040474 205 PEGRYEYKYIVDGEWTCNKY 224 (283)
Q Consensus 205 ~~g~y~ykf~vdg~w~~d~~ 224 (283)
|.|-|+|.|. ||+|+++-+
T Consensus 65 p~G~~hf~~~-~~~W~~~r~ 83 (105)
T cd00503 65 KVGGYHFDYK-NGKWICTRS 83 (105)
T ss_pred CCCCccceec-CCEEEECCC
Confidence 3477888874 999997643
No 253
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=21.80 E-value=2.7e+02 Score=27.63 Aligned_cols=37 Identities=16% Similarity=0.094 Sum_probs=29.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHHH---HhCCCHHHHHHHHHh
Q 040474 96 GGVTYVHCTAGLGRAPAVALAYMFW---VLGYKLNEAHQLLLS 135 (283)
Q Consensus 96 ~~~VlVHC~~G~~RS~~v~~ayLm~---~~~~~~~~A~~~v~~ 135 (283)
-.+.+|||.-|. ++++.++||+ ..+++.++|++.++.
T Consensus 160 ~~pdviH~ND~H---tal~~~el~r~l~~~~~~~~~a~~~~~~ 199 (601)
T TIGR02094 160 IDPDVYHLNEGH---AAFVTLERIRELIAQGLSFEEAWEAVRK 199 (601)
T ss_pred CCceEEEeCCch---HHHHHHHHHHHHHHcCCCHHHHHHhcCC
Confidence 468999999997 4788888864 457899999886653
No 254
>cd00182 TBOX T-box DNA binding domain of the T-box family of transcriptional regulators. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA binding domain of murine Brachyury (T) gene product, the defining feature of the family. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development and conserved expression patterns, most of the known genes in all species being expressed in mesoderm or mesoderm precursors.
Probab=21.75 E-value=2.7e+02 Score=23.18 Aligned_cols=62 Identities=19% Similarity=0.267 Sum_probs=34.4
Q ss_pred CeEEEEEecCC-ceEEEEEEECCEeeecCCcceeecCCCCCcceEEEeccCCCcchHHHhhcccCCC-CCCC
Q 040474 196 GLWILKRELPE-GRYEYKYIVDGEWTCNKYELVSSPNKDGHVNNYVQVDDAPSSVSEALRNRLTSDD-FDLT 265 (283)
Q Consensus 196 ~~~~~~~~l~~-g~y~ykf~vdg~w~~d~~~~~~~~~~~G~~nn~i~v~~~~~~~~~~~~~~~~~~~-~~~~ 265 (283)
..|.+.+++.| +.+.||| ..|+|..+...... ..+-+.+..+.....+..++...+.+ .+||
T Consensus 46 ~~Y~v~l~~~~~D~~Rykf-~~~~W~~~g~~e~~-------~~~~~~~HPdsp~tG~~wM~~~isF~kvKlT 109 (188)
T cd00182 46 ALYSVLMDLVPVDDHRYKF-SGGKWVVAGKAEPH-------LPPRVYVHPDSPATGAHWMKQPVSFDKLKLT 109 (188)
T ss_pred cceEEEEEEEEcCCcEEEe-cCCcEeEcCCCCCC-------CCCceEECCCCCcCHHHHhhCccccchhhcc
Confidence 46888888655 5799999 44999886532211 12224443322334455555554444 3444
No 255
>smart00425 TBOX Domain first found in the mice T locus (Brachyury) protein.
Probab=21.43 E-value=2.1e+02 Score=23.77 Aligned_cols=62 Identities=19% Similarity=0.261 Sum_probs=34.7
Q ss_pred CeEEEEEecCC-ceEEEEEEECCEeeecCCcceeecCCCCCcceEEEeccCCCcchHHHhhcccCCC-CCCC
Q 040474 196 GLWILKRELPE-GRYEYKYIVDGEWTCNKYELVSSPNKDGHVNNYVQVDDAPSSVSEALRNRLTSDD-FDLT 265 (283)
Q Consensus 196 ~~~~~~~~l~~-g~y~ykf~vdg~w~~d~~~~~~~~~~~G~~nn~i~v~~~~~~~~~~~~~~~~~~~-~~~~ 265 (283)
..|.+.+++.| ..++||| .+|+|..+....... .+- +.+..+...+++..+++..+.+ .+||
T Consensus 45 ~~Y~v~l~~~~~d~~rykf-~~~~W~~~g~~e~~~------~~~-~~~Hpdsp~tG~~wM~~~v~F~kvKlT 108 (190)
T smart00425 45 ALYSVLMDLVPVDDKRYKF-NNGKWVVAGKAEPHM------PSR-VYVHPDSPATGAHWMKQPVSFDKVKLT 108 (190)
T ss_pred CcEEEEEEEEEccCcEEEe-cCCcEEEcCCCCCCC------CCc-eEECCCCccCHHHHhhCccccccccee
Confidence 46888888655 5789998 669998865432221 122 3333322334555666655554 3444
No 256
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=21.37 E-value=2.7e+02 Score=21.40 Aligned_cols=33 Identities=30% Similarity=0.567 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHH
Q 040474 79 MRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVAL 115 (283)
Q Consensus 79 ~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ 115 (283)
..+.++.+.+.+.+ ++|++|++ |-. |-|++++.
T Consensus 19 ~~i~~aa~~i~~~~-~~gg~i~~-~G~--G~S~~~a~ 51 (138)
T PF13580_consen 19 EAIEKAADLIAEAL-RNGGRIFV-CGN--GHSAAIAS 51 (138)
T ss_dssp HHHHHHHHHHHHHH-HTT--EEE-EES--THHHHHHH
T ss_pred HHHHHHHHHHHHHH-HCCCEEEE-EcC--chhhhHHH
Confidence 35777888888887 45665554 544 45654433
No 257
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=21.34 E-value=6.4e+02 Score=24.16 Aligned_cols=123 Identities=19% Similarity=0.144 Sum_probs=64.3
Q ss_pred CCeEEcCCCCCccc----HHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhh-CCCeEEEEEecc-CCCch--hHhh
Q 040474 8 PDLIVGSCLQTPED----VDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKT-YDDIQHIRAEIR-DFDAF--DLRM 79 (283)
Q Consensus 8 ~~l~lG~~p~~~~~----~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~-~~~i~~~~ipi~-D~~~~--~~~~ 79 (283)
++-+||+. +...+ .+.|+++||+.++.+..+..... ...+.+++.. ...+..+.+|-. |++.+ +..-
T Consensus 152 GGTiLGTS-R~~~~~~~iv~~L~~~~I~~L~vIGGdgT~~~----A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~td~S~ 226 (459)
T PTZ00286 152 GGTILGSS-RGGFDPKVMVDTLIRHGINILFTLGGDGTHRG----ALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESF 226 (459)
T ss_pred CCceeccC-CChhhHHHHHHHHHHcCCCEEEEeCCchHHHH----HHHHHHHHHHhCCCceEEEeccccCCCCCCcccCc
Confidence 44556665 34333 35688999999999987663211 1223333222 224888888873 44433 2222
Q ss_pred hHHHHHHHHHHHHH-------cCCCEEEEEcCCCCChhHHHHHHHHHHHh----------CCCHHHHHHHHHhh
Q 040474 80 RLPAVISKLYKAIN-------RNGGVTYVHCTAGLGRAPAVALAYMFWVL----------GYKLNEAHQLLLSK 136 (283)
Q Consensus 80 ~~~~~~~~i~~~l~-------~~~~~VlVHC~~G~~RS~~v~~ayLm~~~----------~~~~~~A~~~v~~~ 136 (283)
-|..|++++.++++ ...+.|.|.=.+|. .||-+++.--+... .+++++-++.++++
T Consensus 227 GFdTAv~~~~~aI~~~~~eA~S~~~~v~iVEvMGR-~sG~LAl~aaLA~~~ad~vlIPE~~f~l~~ll~~l~~r 299 (459)
T PTZ00286 227 GFQTAVEEAQNAIRAAYVEAKSAKNGVGIVKLMGR-DSGFIALHASVASADVNVCLIPEFDIPLEGVLEYIEQR 299 (459)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCc-chhHHHHHHhhhhcCCCEEEeCCCCCCHHHHHHHHHHH
Confidence 35556555555542 12234766666663 34434333222222 25666666666543
No 258
>cd04861 LigD_Pol_like LigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. Mycobacterium tuberculosis (Mt)LigD, also found in this group, is monomeric and contains the same modules but these are arranged differently: an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase do
Probab=21.29 E-value=2.8e+02 Score=23.81 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=15.7
Q ss_pred HcCCCEEEEEcCCCCChhHHHHHHHHH
Q 040474 93 NRNGGVTYVHCTAGLGRAPAVALAYMF 119 (283)
Q Consensus 93 ~~~~~~VlVHC~~G~~RS~~v~~ayLm 119 (283)
++++++|+|=...- +|..|+++.|=.
T Consensus 185 ~~R~grvfiDy~qN-~~g~T~vapYS~ 210 (227)
T cd04861 185 AKRGGKIFVDYLQN-ARGKTTVAPYSV 210 (227)
T ss_pred HhCCCCEEEECccC-CCCCeEEecccc
Confidence 34578999997543 244445666543
No 259
>PF10634 Iron_transport: Fe2+ transport protein; InterPro: IPR018470 This is a bacterial family of periplasmic proteins that are thought to function in high-affinity Fe2+ transport.; PDB: 3LZP_B 3LZN_B 3LZR_A 3LZQ_B 3LZO_A 3LZL_B 3PJN_A 3PJL_A 2O6D_A 2O6C_B ....
Probab=21.28 E-value=2.9e+02 Score=22.15 Aligned_cols=48 Identities=17% Similarity=0.298 Sum_probs=33.3
Q ss_pred eEEEEeeCCCcceEEEeeccCCCCccccceeecCCCeEEEEEec-CCceEEEEEEEC
Q 040474 161 LVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKREL-PEGRYEYKYIVD 216 (283)
Q Consensus 161 ~v~f~w~~~g~~~v~l~Gsf~~W~~~~pl~~~~~~~~~~~~~~l-~~g~y~ykf~vd 216 (283)
.|.++....+ ......|+ -.||+-+ ++--|-..+.| .+|+|.-+|.|+
T Consensus 69 ~v~y~i~~~~-~~~~~~G~------~mPM~A~-DGpHYG~Nvkl~g~G~Y~v~~~I~ 117 (151)
T PF10634_consen 69 TVSYEITKKG-SGKVQEGT------FMPMVAS-DGPHYGDNVKLDGPGKYKVTFTIG 117 (151)
T ss_dssp EEEEEEEETT-TTEEEEEE------EEEEEET-TEEEEEEEE-STSSEEEEEEEEEE
T ss_pred EEEEEEEeCC-CCeEEEEe------cceeecC-cCccccccccCCCCccEEEEEEEc
Confidence 4566666655 33366776 3677754 56678888887 689999999997
No 260
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=21.14 E-value=63 Score=24.99 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEcCCCCChh
Q 040474 81 LPAVISKLYKAINRNGGVTYVHCTAGLGRA 110 (283)
Q Consensus 81 ~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS 110 (283)
+.++++.|...-....++++|||....+-.
T Consensus 81 I~~va~~La~~~~~~~g~iVvHtSGa~~~~ 110 (127)
T PF10727_consen 81 IAEVAEQLAQYGAWRPGQIVVHTSGALGSD 110 (127)
T ss_dssp HHHHHHHHHCC--S-TT-EEEES-SS--GG
T ss_pred HHHHHHHHHHhccCCCCcEEEECCCCChHH
Confidence 344555544331123568999998876544
No 261
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=20.59 E-value=2.7e+02 Score=25.97 Aligned_cols=64 Identities=14% Similarity=0.270 Sum_probs=36.0
Q ss_pred CeEEEEEeccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC
Q 040474 61 DIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF 140 (283)
Q Consensus 61 ~i~~~~ipi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~ 140 (283)
|+.|..+|+.+.+..+ .+.|..+++.+-+-|+|.=..|.+.-.++.+. ...+++++||+.+|.+
T Consensus 128 Gi~Y~~v~L~~dg~~D--------~~~i~~~~~~~tk~v~IQRSrGYs~R~sl~i~--------~I~~~i~~vk~~~p~~ 191 (403)
T PF06838_consen 128 GIKYREVPLTEDGTID--------WEAIKKALKPNTKMVLIQRSRGYSWRPSLTIE--------EIKEIIKFVKEINPDV 191 (403)
T ss_dssp T-EEEE--B-TTSSB---------HHHHHHHHHTTEEEEEEE-S-TTSSS----HH--------HHHHHHHHHHHH-TTS
T ss_pred CceeEEEeecCCCCcC--------HHHHHHhhccCceEEEEecCCCCCCCCCCCHH--------HHHHHHHHHHhhCCCe
Confidence 8999999999877777 23344555444456888877787655554444 3567899999999863
No 262
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=20.52 E-value=1.9e+02 Score=25.38 Aligned_cols=30 Identities=13% Similarity=0.087 Sum_probs=18.2
Q ss_pred cCCCEEEEEcCCCCChhHHHHHHHHHHHhCCC
Q 040474 94 RNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125 (283)
Q Consensus 94 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 125 (283)
.++.+|+|+|..|. ++++. +++++...|..
T Consensus 85 ~~d~~VVvyc~~~~-~~a~~-~~~~l~~~G~~ 114 (281)
T PRK11493 85 NQDKHLVVYDEGNL-FSAPR-AWWMLRTFGVE 114 (281)
T ss_pred CCCCEEEEECCCCC-chHHH-HHHHHHHhcCC
Confidence 35678999998764 54332 33444566653
No 263
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=20.41 E-value=6.1e+02 Score=23.21 Aligned_cols=29 Identities=17% Similarity=0.398 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHcCCCEEEEEcCCCCChh
Q 040474 80 RLPAVISKLYKAINRNGGVTYVHCTAGLGRA 110 (283)
Q Consensus 80 ~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS 110 (283)
.+.++++.+.+. .+..-+|.||..+.-=.
T Consensus 161 ei~~av~~~r~~--g~~~i~LLhC~s~YPap 189 (347)
T COG2089 161 EIEEAVAILREN--GNPDIALLHCTSAYPAP 189 (347)
T ss_pred HHHHHHHHHHhc--CCCCeEEEEecCCCCCC
Confidence 455566655433 22235999999998433
No 264
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=20.21 E-value=94 Score=23.11 Aligned_cols=14 Identities=21% Similarity=0.515 Sum_probs=11.9
Q ss_pred CEEEEEcCCCCChh
Q 040474 97 GVTYVHCTAGLGRA 110 (283)
Q Consensus 97 ~~VlVHC~~G~~RS 110 (283)
.++++-|.+|.|=|
T Consensus 2 k~IlLvC~aGmSTS 15 (102)
T COG1440 2 KKILLVCAAGMSTS 15 (102)
T ss_pred ceEEEEecCCCcHH
Confidence 36999999999866
No 265
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=20.12 E-value=88 Score=22.62 Aligned_cols=13 Identities=15% Similarity=0.365 Sum_probs=11.4
Q ss_pred EEEEEcCCCCChh
Q 040474 98 VTYVHCTAGLGRA 110 (283)
Q Consensus 98 ~VlVHC~~G~~RS 110 (283)
+||+-|.+|++=|
T Consensus 4 kILvvCgsG~~TS 16 (94)
T PRK10310 4 KIIVACGGAVATS 16 (94)
T ss_pred eEEEECCCchhHH
Confidence 6999999999755
No 266
>cd04862 PaeLigD_Pol_like PaeLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The PaeLigD Pol domain in vitro, in a manganese-dependent fashion, catalyzes templated extensions of 5'-overhang duplex DNA, and nontemplated single-nu
Probab=20.12 E-value=3e+02 Score=23.66 Aligned_cols=26 Identities=15% Similarity=0.371 Sum_probs=16.6
Q ss_pred HcCCCEEEEEcCCCCChhHHHHHHHHH
Q 040474 93 NRNGGVTYVHCTAGLGRAPAVALAYMF 119 (283)
Q Consensus 93 ~~~~~~VlVHC~~G~~RS~~v~~ayLm 119 (283)
++++++|+|=+..- +|..|+++.|=+
T Consensus 185 ~~R~gkvfiDylqN-~~g~T~vapYS~ 210 (227)
T cd04862 185 AKRVGKIFIDYLRN-GRGATAVAPYSV 210 (227)
T ss_pred HhCCCcEEEECccC-CCCCeEEecccc
Confidence 34578999999663 244456666643
No 267
>cd04865 LigD_Pol_like_2 LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=20.06 E-value=3e+02 Score=23.68 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=15.3
Q ss_pred HcCCCEEEEEcCCCCChhHHHHHHHH
Q 040474 93 NRNGGVTYVHCTAGLGRAPAVALAYM 118 (283)
Q Consensus 93 ~~~~~~VlVHC~~G~~RS~~v~~ayL 118 (283)
++++++|+|=...- +|..|+++.|=
T Consensus 186 ~~R~grvfiDylqN-~~g~T~vapYS 210 (228)
T cd04865 186 KERGGRVYLDYLQN-ARGKTLAAPYS 210 (228)
T ss_pred HhCCCCEEEECccC-CCCCeEEeccc
Confidence 34578999997543 24444555553
Done!