Query 040477
Match_columns 179
No_of_seqs 198 out of 487
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 14:06:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040477.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040477hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wmh_B Partitioning defective- 96.8 0.0092 3.2E-07 43.6 9.0 75 94-178 5-85 (86)
2 1vd2_A Protein kinase C, IOTA 96.3 0.014 4.8E-07 42.7 7.3 60 94-162 5-64 (89)
3 2kkc_A Sequestosome-1; P62, PB 95.2 0.046 1.6E-06 40.8 6.4 61 95-162 5-80 (102)
4 2ktr_A Sequestosome-1; autopha 94.5 0.11 3.6E-06 39.9 6.7 62 94-162 19-95 (117)
5 1q1o_A Cell division control p 92.9 0.35 1.2E-05 35.9 7.0 74 95-171 5-85 (98)
6 1pqs_A Cell division control p 90.4 0.47 1.6E-05 33.6 5.0 58 111-171 6-64 (77)
7 1oey_A P67-PHOX, neutrophil cy 88.8 2.6 9E-05 30.2 8.1 70 96-176 6-78 (83)
8 1oey_J P40-PHOX, neutrophil cy 87.0 0.98 3.4E-05 34.1 5.0 41 112-162 28-68 (107)
9 2bkf_A Zinc-finger protein NBR 85.7 2.8 9.5E-05 30.5 6.7 55 96-160 7-61 (87)
10 1wj6_A KIAA0049 protein, RSGI 83.9 2.9 0.0001 31.2 6.3 65 95-171 14-78 (101)
11 1e8p_A Endoglucanase, dockerin 60.2 2.8 9.7E-05 27.3 0.9 13 146-158 20-32 (46)
12 3o27_A Putative uncharacterize 45.1 7 0.00024 27.3 1.0 19 141-159 41-59 (68)
13 2npt_A Dual specificity mitoge 36.7 1E+02 0.0035 22.9 6.2 57 96-161 15-72 (106)
14 2j4m_A Endoglucanase 45A; dock 31.3 10 0.00035 28.2 0.0 13 146-158 21-33 (100)
15 1wgr_A Growth factor receptor- 25.0 1.6E+02 0.0055 21.3 5.6 39 94-133 8-46 (100)
No 1
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=96.80 E-value=0.0092 Score=43.59 Aligned_cols=75 Identities=15% Similarity=0.128 Sum_probs=56.6
Q ss_pred CcceeEEEecCceeeeeeecCCCCChHHHHHHHHHHhcccccccccccCCccEEEEEeCCCCeEEcCCCChHHHH---hc
Q 040477 94 RWAYVKVNMDGVMVGRKICILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVGDVPWTEFV---ES 170 (179)
Q Consensus 94 ~~~~VKV~MdG~piGRKVDL~~~~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD~eGD~mLVGDvPW~~Fv---~s 170 (179)
+..-||..-++.--=-.+|-....+|++|..-|+++|.+. ...+++.|.|.+||++-+-++ ++|. .+
T Consensus 5 ~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~--------~~~f~i~Y~D~dGDLlpInnD--dnl~~Al~~ 74 (86)
T 1wmh_B 5 SIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIP--------GLDVLLGYTDAHGDLLPLTND--DSLHRALAS 74 (86)
T ss_dssp CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT--------TCCCEEEEECTTSCEEECCSH--HHHHHHTTS
T ss_pred CEEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCC--------CCCEEEEEECCCCCEeeecCH--HHHHHHHHh
Confidence 4567888888874333566667789999999999999842 345999999999999998876 5554 45
Q ss_pred cc---eeEEcc
Q 040477 171 VK---RLRIAR 178 (179)
Q Consensus 171 vk---RLrI~r 178 (179)
+| ||.|-|
T Consensus 75 a~plLRl~Iqr 85 (86)
T 1wmh_B 75 GPPPLRLLVQK 85 (86)
T ss_dssp SSSCEEEEEEC
T ss_pred CCCcEEEEEEc
Confidence 55 555554
No 2
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=96.33 E-value=0.014 Score=42.66 Aligned_cols=60 Identities=18% Similarity=0.178 Sum_probs=46.7
Q ss_pred CcceeEEEecCceeeeeeecCCCCChHHHHHHHHHHhcccccccccccCCccEEEEEeCCCCeEEcCCC
Q 040477 94 RWAYVKVNMDGVMVGRKICILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVGDV 162 (179)
Q Consensus 94 ~~~~VKV~MdG~piGRKVDL~~~~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD~eGD~mLVGDv 162 (179)
+..=||++-.|.-+ .+-+..--+|++|...|.++|... .+..+++.|.|.|||+.-+-..
T Consensus 5 ~~vkvK~~~~gdi~--~~~v~~~i~~~~L~~kv~~~~~~~-------~~~~f~lky~DEeGD~itisSd 64 (89)
T 1vd2_A 5 SQVRVKAYYRGDIM--ITHFEPSISFEGLCNEVRDMCSFD-------NEQLFTMKWIDEEGDPCTVSSQ 64 (89)
T ss_dssp SCEEEEEESSSCEE--EEEECTTCCHHHHHHHHHHHTTCC-------SSCCEEEEECCSSSCCEECCSH
T ss_pred CeEEEEEEeCCeEE--EEECCCCCCHHHHHHHHHHHhCCC-------CCCeEEEEEECCCCCcccccCH
Confidence 34678999999844 444445669999999999999964 2456899999999999876543
No 3
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=95.24 E-value=0.046 Score=40.78 Aligned_cols=61 Identities=13% Similarity=0.075 Sum_probs=45.2
Q ss_pred cceeEEEecC----ceeeeeeecCC-----------CCChHHHHHHHHHHhcccccccccccCCccEEEEEeCCCCeEEc
Q 040477 95 WAYVKVNMDG----VMVGRKICILD-----------HCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTV 159 (179)
Q Consensus 95 ~~~VKV~MdG----~piGRKVDL~~-----------~~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD~eGD~mLV 159 (179)
..-||++..| ..-=|++-|.. ..+|++|...+.++|... .+..|.|.|.|.|||+.-+
T Consensus 5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l-------~~~~f~l~Y~DedGDlIti 77 (102)
T 2kkc_A 5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPAL-------RPGGFQAHYRAERGDLVAF 77 (102)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTS-------CSSCEEEEEECTTCCEEEE
T ss_pred eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHcccc-------CCCcEEEEEECCCCCEEEe
Confidence 4678888865 22446555532 248999999999999843 2346999999999999988
Q ss_pred CCC
Q 040477 160 GDV 162 (179)
Q Consensus 160 GDv 162 (179)
.+.
T Consensus 78 SsD 80 (102)
T 2kkc_A 78 SSD 80 (102)
T ss_dssp CSH
T ss_pred cCH
Confidence 865
No 4
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=94.46 E-value=0.11 Score=39.87 Aligned_cols=62 Identities=13% Similarity=0.086 Sum_probs=46.1
Q ss_pred CcceeEEEecC----ceeeeeeecC-----------CCCChHHHHHHHHHHhcccccccccccCCccEEEEEeCCCCeEE
Q 040477 94 RWAYVKVNMDG----VMVGRKICIL-----------DHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRT 158 (179)
Q Consensus 94 ~~~~VKV~MdG----~piGRKVDL~-----------~~~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD~eGD~mL 158 (179)
...-||++..| ..-=|++-|. .-.+|++|...+.++|... .+..|+|.|.|.|||+.-
T Consensus 19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L-------~~~~f~l~YkDEdGDlIt 91 (117)
T 2ktr_A 19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPAL-------RPGGFQAHYRAERGDLVA 91 (117)
T ss_dssp -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTS-------CSSCEEEEEECTTCCEEE
T ss_pred ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHcccc-------CCCcEEEEEECCCCCEEE
Confidence 46889999974 1234655554 1359999999999999743 234699999999999998
Q ss_pred cCCC
Q 040477 159 VGDV 162 (179)
Q Consensus 159 VGDv 162 (179)
+-..
T Consensus 92 ISsD 95 (117)
T 2ktr_A 92 FSSD 95 (117)
T ss_dssp ECSH
T ss_pred ecCH
Confidence 8765
No 5
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=92.93 E-value=0.35 Score=35.94 Aligned_cols=74 Identities=8% Similarity=0.125 Sum_probs=54.1
Q ss_pred cceeEEEecCc------eeeeeeecCCCCChHHHHHHHHHHhcccccccccccCCccEEEEEeCCCCeEEcCC-CChHHH
Q 040477 95 WAYVKVNMDGV------MVGRKICILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVGD-VPWTEF 167 (179)
Q Consensus 95 ~~~VKV~MdG~------piGRKVDL~~~~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD~eGD~mLVGD-vPW~~F 167 (179)
+.-|||+-+.. .=.|.|=+..-=+|++|...+.+-|+....- + -....+|-|+|.|||+...++ .=|++=
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~-~--i~~~~klkYkDEdGD~Vtl~sddDl~~A 81 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNN-N--ISPITKIKYQDEDGDFVVLGSDEDWNVA 81 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSS-C--CCCCCCEEEECSSSCEEEECSHHHHHHH
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccc-c--ccceeEEEEEcCCCCEEEEcCHHHHHHH
Confidence 35788887732 1236777778889999999999999864110 0 023478999999999988885 578887
Q ss_pred Hhcc
Q 040477 168 VESV 171 (179)
Q Consensus 168 v~sv 171 (179)
+.++
T Consensus 82 ~e~~ 85 (98)
T 1q1o_A 82 KEML 85 (98)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 6
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=90.39 E-value=0.47 Score=33.56 Aligned_cols=58 Identities=10% Similarity=0.244 Sum_probs=42.5
Q ss_pred eecCCCCChHHHHHHHHHHhcccccccccccCCccEEEEEeCCCCeEEcCC-CChHHHHhcc
Q 040477 111 ICILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVGD-VPWTEFVESV 171 (179)
Q Consensus 111 VDL~~~~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD~eGD~mLVGD-vPW~~Fv~sv 171 (179)
|=+..-=+|++|...+.+-|..... . ......+|-|+|.|||+...++ .=|++=+.++
T Consensus 6 i~V~~~i~f~~L~~kI~~kl~~~~~-~--~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~ 64 (77)
T 1pqs_A 6 LLVEKVWNFDDLIMAINSKISNTHN-N--NISPITKIKYQDEDGDFVVLGSDEDWNVAKEML 64 (77)
T ss_dssp EECTTCCCSHHHHHHHHHHTTTTTS-S--CSCSTTCCEEEETTTEEEECCSTTHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHccccc-c--cccceeEEEEEcCCCCEEEEcCHHHHHHHHHHH
Confidence 3344556799999999999996411 0 0135689999999999987775 5788877765
No 7
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=88.79 E-value=2.6 Score=30.17 Aligned_cols=70 Identities=16% Similarity=0.128 Sum_probs=55.2
Q ss_pred ceeEEEecCceeeeeeecCCCCChHHHHHHHHHHhcccccccccccCCccEEEEEe-CCCCeEEcCCCChHHHHhccc--
Q 040477 96 AYVKVNMDGVMVGRKICILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKD-GEENWRTVGDVPWTEFVESVK-- 172 (179)
Q Consensus 96 ~~VKV~MdG~piGRKVDL~~~~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD-~eGD~mLVGDvPW~~Fv~svk-- 172 (179)
.=|||+-. +.-.|....=-+|.+|...|.+-+.... .+-+|-|.| .+|.|++.+|.-++.=...|+
T Consensus 6 ~~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~~--------~~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~n~ 74 (83)
T 1oey_A 6 YTLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELRL--------EHTKLSYRPRDSNELVPLSEDSMKDAWGQVKNY 74 (83)
T ss_dssp EEEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCCG--------GGCCEEECCTTCSSCEECCTTTHHHHHTTCBTT
T ss_pred EEEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCCc--------ceeEEEeeCCCCCCeeccChHHHHHHHHhccCC
Confidence 45677766 6778888888999999999999887632 235889999 688888999999998887754
Q ss_pred eeEE
Q 040477 173 RLRI 176 (179)
Q Consensus 173 RLrI 176 (179)
||++
T Consensus 75 ~LtL 78 (83)
T 1oey_A 75 CLTL 78 (83)
T ss_dssp EEEE
T ss_pred cEEE
Confidence 5554
No 8
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=86.97 E-value=0.98 Score=34.13 Aligned_cols=41 Identities=15% Similarity=0.079 Sum_probs=34.3
Q ss_pred ecCCCCChHHHHHHHHHHhcccccccccccCCccEEEEEeCCCCeEEcCCC
Q 040477 112 CILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVGDV 162 (179)
Q Consensus 112 DL~~~~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD~eGD~mLVGDv 162 (179)
||...-.|.+|..-..+-|..+ +-.|-|.|.|||+.-+=|.
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~~----------DIaLNYrD~eGDLIrildd 68 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQRE----------DIALNYRDAEGDLVRLLSD 68 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCCS----------SEEEEEECTTSCEEECCSH
T ss_pred ccccCCCHHHHHHHHHHHhccc----------ceeeeeecCCCCEEEEcch
Confidence 5778889999999999999843 3689999999999876553
No 9
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=85.66 E-value=2.8 Score=30.53 Aligned_cols=55 Identities=9% Similarity=0.154 Sum_probs=42.9
Q ss_pred ceeEEEecCceeeeeeecCCCCChHHHHHHHHHHhcccccccccccCCccEEEEEeCCCCeEEcC
Q 040477 96 AYVKVNMDGVMVGRKICILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVG 160 (179)
Q Consensus 96 ~~VKV~MdG~piGRKVDL~~~~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD~eGD~mLVG 160 (179)
.=+||.-.|...=--|.-..--++++|-..+..+|+.. .++|.|.|.|||-.-|=
T Consensus 7 v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~----------~~~ikY~DEenD~v~i~ 61 (87)
T 2bkf_A 7 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN----------TIQIKYLDEENEEVSIN 61 (87)
T ss_dssp EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS----------SEEEEEECTTSCEEEEC
T ss_pred EEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC----------ceEEEEEcCCCCEEEEe
Confidence 45789999984333354444789999999999999864 37999999999988764
No 10
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=83.90 E-value=2.9 Score=31.24 Aligned_cols=65 Identities=11% Similarity=0.168 Sum_probs=49.0
Q ss_pred cceeEEEecCceeeeeeecCCCCChHHHHHHHHHHhcccccccccccCCccEEEEEeCCCCeEEcCCCChHHHHhcc
Q 040477 95 WAYVKVNMDGVMVGRKICILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVGDVPWTEFVESV 171 (179)
Q Consensus 95 ~~~VKV~MdG~piGRKVDL~~~~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD~eGD~mLVGDvPW~~Fv~sv 171 (179)
..=+||.-.|...=--|.-..--.+++|-..+..+|+.. .++|.|.|.|||-.-|= -+.+|-+.+
T Consensus 14 ~v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~----------~~~IkY~DEenD~V~i~--Sq~E~eEAl 78 (101)
T 1wj6_A 14 QVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN----------TIQIKYLDEENEEVSIN--SQGEYEEAL 78 (101)
T ss_dssp CEEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS----------SBCCEEECTTSCEECCC--SHHHHHHHH
T ss_pred cEEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC----------ceEEEEecCCCCEEEEe--cHHHHHHHH
Confidence 356899999984433465555789999999999999964 36999999999998774 356655443
No 11
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=60.18 E-value=2.8 Score=27.26 Aligned_cols=13 Identities=23% Similarity=0.654 Sum_probs=11.2
Q ss_pred EEEEEeCCCCeEE
Q 040477 146 SLLYKDGEENWRT 158 (179)
Q Consensus 146 ~l~YeD~eGD~mL 158 (179)
.++|+|.+|+|=.
T Consensus 20 ~V~YtD~dG~WGV 32 (46)
T 1e8p_A 20 KVEYTDASGQWGV 32 (46)
T ss_dssp CEEEEETTEEEEE
T ss_pred eEEEEcCCCcccc
Confidence 5889999999954
No 12
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=45.12 E-value=7 Score=27.29 Aligned_cols=19 Identities=11% Similarity=0.097 Sum_probs=15.8
Q ss_pred cCCccEEEEEeCCCCeEEc
Q 040477 141 ARSEFSLLYKDGEENWRTV 159 (179)
Q Consensus 141 ~~~~~~l~YeD~eGD~mLV 159 (179)
.+.++.++++|++|+..|+
T Consensus 41 ~gD~fel~ve~kdgeIvLc 59 (68)
T 3o27_A 41 PDDTFILNMEQKDGDIVLS 59 (68)
T ss_dssp TTCCEEEEEEEETTEEEEE
T ss_pred CCCEEEEEEecCCCeEEEE
Confidence 3456899999999999886
No 13
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=36.74 E-value=1e+02 Score=22.87 Aligned_cols=57 Identities=9% Similarity=0.123 Sum_probs=40.4
Q ss_pred ceeEEEec-CceeeeeeecCCCCChHHHHHHHHHHhcccccccccccCCccEEEEEeCCCCeEEcCC
Q 040477 96 AYVKVNMD-GVMVGRKICILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVGD 161 (179)
Q Consensus 96 ~~VKV~Md-G~piGRKVDL~~~~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD~eGD~mLVGD 161 (179)
.-+.+... |..+--.||-...=++.+++.++.+...-. .--..-|||.+||.+-|--
T Consensus 15 lVIRIk~p~~g~vDwaV~~~~~L~FrDvL~~I~~vmP~a---------T~TAFeYEDE~gDRITVRS 72 (106)
T 2npt_A 15 LVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPEA---------TTTAFEYEDEDGDRITVRS 72 (106)
T ss_dssp EEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTTS---------CCSEEEEECTTSCEEEECS
T ss_pred eEEEEECCCCCccccccCCcccccHHHHHHHHHHhCccc---------eeeeeeeccccCCeeEEcc
Confidence 34445554 666888888777889999999998776532 2246779999999998853
No 14
>2j4m_A Endoglucanase 45A; dockerin, cellulosome, protein binding, small cysteine-rich; NMR {Piromyces equi} PDB: 2j4n_A
Probab=31.25 E-value=10 Score=28.22 Aligned_cols=13 Identities=23% Similarity=0.654 Sum_probs=11.1
Q ss_pred EEEEEeCCCCeEE
Q 040477 146 SLLYKDGEENWRT 158 (179)
Q Consensus 146 ~l~YeD~eGD~mL 158 (179)
.++|+|.||||=.
T Consensus 21 ~V~YtD~dG~WGV 33 (100)
T 2j4m_A 21 KVEYTDASGQWGV 33 (100)
T ss_dssp CCCEESSSCEEEE
T ss_pred eEEEEcCCCccce
Confidence 6889999999954
No 15
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=25.04 E-value=1.6e+02 Score=21.32 Aligned_cols=39 Identities=15% Similarity=-0.015 Sum_probs=32.3
Q ss_pred CcceeEEEecCceeeeeeecCCCCChHHHHHHHHHHhccc
Q 040477 94 RWAYVKVNMDGVMVGRKICILDHCGYSSLACQLEDMFVPR 133 (179)
Q Consensus 94 ~~~~VKV~MdG~piGRKVDL~~~~sY~eL~~~Le~MF~~~ 133 (179)
+...|||+++.. -.+.|+...--.=.++.+.|..-+.+.
T Consensus 8 ~k~vvkvf~~Dg-ssksi~V~~~~Ta~dv~~~L~~K~~~~ 46 (100)
T 1wgr_A 8 RPHVVKVYSEDG-ACRSVEVAAGATARHVCEMLVQRAHAL 46 (100)
T ss_dssp SCEEEEEEETTS-CEEEEEECTTCCHHHHHHHHHCSSSCC
T ss_pred CCEEEEEEecCC-CEEEEEECCCCcHHHHHHHHHHHcCCC
Confidence 457999999655 469999999999999999998887763
Done!