BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040481
(222 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 236 bits (603), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 106/164 (64%), Positives = 137/164 (83%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
YLFK+V+IGDS VGKSNLLSR+ RNEFN SK+TIGVEF T+S+++DGK +KAQIWDTAG
Sbjct: 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 87
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
QER+RA+TSAYYRGAVGAL+VYDI + T++++ RWL EL+ H+D+ + MLVGNK DL
Sbjct: 88 QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 147
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIY 178
+R V T+E ++ AE GL F+ETSALDSTNV++AF+ ++ EIY
Sbjct: 148 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 236 bits (603), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 106/164 (64%), Positives = 137/164 (83%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
YLFK+V+IGDS VGKSNLLSR+ RNEFN SK+TIGVEF T+S+++DGK +KAQIWDTAG
Sbjct: 19 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 78
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
QER+RA+TSAYYRGAVGAL+VYDI + T++++ RWL EL+ H+D+ + MLVGNK DL
Sbjct: 79 QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 138
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIY 178
+R V T+E ++ AE GL F+ETSALDSTNV++AF+ ++ EIY
Sbjct: 139 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 182
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 234 bits (596), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 107/170 (62%), Positives = 138/170 (81%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
YLFK+V+IGDS VGKSNLLSR+ RNEFN SK+TIGVEF T+S+++DGK +KAQIWDTAG
Sbjct: 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 63
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
QER+R +TSAYYRGAVGAL+VYDI + T++++ RWL EL+ H+D+ + MLVGNK DL
Sbjct: 64 QERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 123
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSNVSRK 184
+R V T+E ++ AE L F+ETSALDSTNV+ AF+ ++ EIY VS+K
Sbjct: 124 HLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQK 173
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 233 bits (595), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 105/164 (64%), Positives = 136/164 (82%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
YLFK+V+IGDS VGKSNLLSR+ RNEFN SK+TIGVEF T+S+++DGK +KAQIWDTAG
Sbjct: 7 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 66
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
ER+RA+TSAYYRGAVGAL+VYDI + T++++ RWL EL+ H+D+ + MLVGNK DL
Sbjct: 67 LERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 126
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIY 178
+R V T+E ++ AE GL F+ETSALDSTNV++AF+ ++ EIY
Sbjct: 127 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 170
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 233 bits (595), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 105/164 (64%), Positives = 136/164 (82%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
YLFK+V+IGDS VGKSNLLSR+ RNEFN SK+TIGVEF T+S+++DGK +KAQIWDTAG
Sbjct: 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 87
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
ER+RA+TSAYYRGAVGAL+VYDI + T++++ RWL EL+ H+D+ + MLVGNK DL
Sbjct: 88 LERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 147
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIY 178
+R V T+E ++ AE GL F+ETSALDSTNV++AF+ ++ EIY
Sbjct: 148 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 231 bits (588), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 104/164 (63%), Positives = 135/164 (82%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
YLFK+V+IGDS VGKSNLLSR+ RNEFN SK+TIGVEF T+S+++DGK +KAQIWDTAG
Sbjct: 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 63
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
ER+RA+TSAYYRGAVGAL+VYDI + T++++ RWL EL+ H+D+ + LVGNK DL
Sbjct: 64 LERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLR 123
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIY 178
+R V T+E ++ AE GL F+ETSALDSTNV++AF+ ++ EIY
Sbjct: 124 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 230 bits (587), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 104/164 (63%), Positives = 135/164 (82%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
YLFK+V+IGDS VGKSNLLSR+ RNEFN SK+TIGVEF T+S+++DGK +KAQIWDTAG
Sbjct: 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 69
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
ER+RA+TSAYYRGAVGAL+VYDI + T++++ RWL EL+ H+D+ + LVGNK DL
Sbjct: 70 LERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLR 129
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIY 178
+R V T+E ++ AE GL F+ETSALDSTNV++AF+ ++ EIY
Sbjct: 130 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 220 bits (561), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 104/172 (60%), Positives = 135/172 (78%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75
LFKIV+IGDS VGKSNLLSR+ +NEFN SK+TIGVEF T+++EI+GK +KAQIWDTAGQ
Sbjct: 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ 72
Query: 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLES 135
ER+RA+TSAYYRGAVGALIVYDI++ +++++ + WL EL+ ++D VA L+GNK DL
Sbjct: 73 ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAH 132
Query: 136 IRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSNVSRKVLN 187
+R V TEE K+ A+ L F ETSAL+S NV AFE +I IY VS+ ++
Sbjct: 133 LRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMD 184
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 216 bits (550), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 99/170 (58%), Positives = 132/170 (77%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
++FK+V+IG+S VGK+NLLSR+ RNEF+ S+ TIGVEF T+++ + VKAQIWDTAG
Sbjct: 9 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAG 68
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
ER+RA+TSAYYRGAVGAL+V+D+T+ T+ + RWL EL H++ T+ MLVGNK DL
Sbjct: 69 LERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS 128
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSNVSRK 184
R V TEE + AE GL F+ETSALDSTNV+ AFE V++EI++ VS++
Sbjct: 129 QAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 178
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 216 bits (549), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 99/170 (58%), Positives = 132/170 (77%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
++FK+V+IG+S VGK+NLLSR+ RNEF+ S+ TIGVEF T+++ + VKAQIWDTAG
Sbjct: 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAG 83
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
ER+RA+TSAYYRGAVGAL+V+D+T+ T+ + RWL EL H++ T+ MLVGNK DL
Sbjct: 84 LERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS 143
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSNVSRK 184
R V TEE + AE GL F+ETSALDSTNV+ AFE V++EI++ VS++
Sbjct: 144 QAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 210 bits (535), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 100/171 (58%), Positives = 138/171 (80%), Gaps = 2/171 (1%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEI-DGKEVKAQIWDTA 73
YLFKIV+IGDS VGKSNLLSR+ R+EFN SK+TIGVEF T+S+++ + K +KAQIWDTA
Sbjct: 6 YLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTA 65
Query: 74 GQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDL 133
GQER+RA+TSAYYRGAVGAL+VYDIT++ +F++I +WL EL+ ++D+ + +LVGNK DL
Sbjct: 66 GQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDL 125
Query: 134 ESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSNVSRK 184
+ +R ++ + A+ E L F+ETSAL++TNV+ AF ++ EIY NV +K
Sbjct: 126 KHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIY-NVRQK 175
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 203 bits (516), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 97/169 (57%), Positives = 130/169 (76%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
YLFKIV+IGDS VGKSNLLSR+ +EFN SK+TIGVEF T+++E++ K++KAQIWDTAG
Sbjct: 9 YLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAG 68
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
ER+RA+TSAYYRGAVGALIVYDI++ +++++ + WL EL+ ++D VA L+GNK DL
Sbjct: 69 LERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLA 128
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSNVSR 183
+R V T+E K+ A + F ETSAL+S NV AF +I I+ VS+
Sbjct: 129 HLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSK 177
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 192 bits (487), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 90/172 (52%), Positives = 120/172 (69%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
YLFK +IIGD+ VGKS LL ++ F P TIGVEF + + IDGK++K QIWDTAG
Sbjct: 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
QE FR++T +YYRGA GAL+VYDITRR TF+ ++ WL++ + HS + + ML+GNK DLE
Sbjct: 80 QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSNVSRKVL 186
S R+V EEG++ A GL FMETSA + NV+ AF +EIY + + +
Sbjct: 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLF 191
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 191 bits (485), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 90/164 (54%), Positives = 118/164 (71%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
YLFK +IIGD+ VGKS LL ++ F P TIGVEF + + IDGK++K QIWDTAG
Sbjct: 9 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAG 68
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
QE FR++T +YYRGA GAL+VYDITRR TF+ ++ WL++ + HS++ + ML+GNK DLE
Sbjct: 69 QESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLE 128
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIY 178
S R V EEG++ A GL FMETSA ++NV+ AF +EIY
Sbjct: 129 SRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIY 172
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 187 bits (474), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 88/180 (48%), Positives = 131/180 (72%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
YLFK+++IG+S VGKS LL R++ + + +TIGV+F+ +++E+DGK VK QIWDTAG
Sbjct: 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG 66
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
QERFR +TS+YYRG+ G +IVYD+T + +F+ + WL E+ ++ +TV ++LVGNKCDL+
Sbjct: 67 QERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK 126
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSNVSRKVLNSDSYKAE 194
R V + K A+A + F+ETSALDSTNV+ AF + R+I ++S++ LN + K E
Sbjct: 127 DKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKE 186
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 186 bits (473), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 88/180 (48%), Positives = 131/180 (72%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
YLFK+++IG+S VGKS LL R++ + + +TIGV+F+ +++E+DGK VK QIWDTAG
Sbjct: 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG 66
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
QERFR +TS+YYRG+ G +IVYD+T + +F+ + WL E+ ++ +TV ++LVGNKCDL+
Sbjct: 67 QERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK 126
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSNVSRKVLNSDSYKAE 194
R V + K A+A + F+ETSALDSTNV+ AF + R+I ++S++ LN + K E
Sbjct: 127 DKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKE 186
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 182 bits (461), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 82/170 (48%), Positives = 124/170 (72%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
YLFK+++IGDS VGK+ +L R++ + FN +TIG++F+ +++E+DGK +K QIWDTAG
Sbjct: 5 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAG 64
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
QERFR +T+AYYRGA+G ++VYDIT +FD+I W+ ++ H+ V +M++GNKCD+
Sbjct: 65 QERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN 124
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSNVSRK 184
R VS E G+ LA G+ FMETSA + NV++AF + R+I + + +K
Sbjct: 125 DKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK 174
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 180 bits (457), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 81/169 (47%), Positives = 123/169 (72%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
YLFK+++IGDS VGK+ +L R++ + FN +TIG++F+ +++E+DGK +K QIWDTAG
Sbjct: 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAG 66
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
QERFR +T+AYYRGA+G ++VYDIT +FD+I W+ ++ H+ V +M++GNKCD+
Sbjct: 67 QERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN 126
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSNVSR 183
R VS E G+ LA G+ FMETSA + NV++AF + R+I + + +
Sbjct: 127 DKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDK 175
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 180 bits (456), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 85/166 (51%), Positives = 115/166 (69%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
Y+FK +IIGD VGKS LL ++ +F TIGVEF T+ +E+ G+++K QIWDTAG
Sbjct: 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 73
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
QERFRAVT +YYRGA GAL+VYDITRR+T++ +S WL + + ++ +L+GNK DLE
Sbjct: 74 QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSN 180
+ R+V+ EE K AE GL F+E SA NV+ AF ++IY N
Sbjct: 134 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQN 179
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 179 bits (454), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 83/163 (50%), Positives = 121/163 (74%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
YLFK+++IG+S VGKS LL R++ + + +TIGV+F+ +++E+DGK VK QIWDTAG
Sbjct: 20 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG 79
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
QERFR +TS+YYRG+ G +IVYD+T + +F+ + WL E+ ++ +TV ++LVGNKCDL+
Sbjct: 80 QERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK 139
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V + K A+A + F+ETSALDSTNV+ AF + R+I
Sbjct: 140 DKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 178 bits (452), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 115/167 (68%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
Y+FK +IIGD VGKS LL ++ +F TIGVEF T+ +E+ G+++K QIWDTAG
Sbjct: 29 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 88
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
Q RFRAVT +YYRGA GAL+VYDITRR+T++ +S WL + + ++ +L+GNK DLE
Sbjct: 89 QGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 148
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSNV 181
+ R+V+ EE K AE GL F+E SA NV+ AF ++IY N+
Sbjct: 149 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNI 195
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 177 bits (449), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 83/167 (49%), Positives = 123/167 (73%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
YLFK+++IGDS VGKS LL R+A + + +TIGV+F+ +++ ++ K VK QIWDTAG
Sbjct: 8 YLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAG 67
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
QERFR +TS+YYRGA G +IVYD+T R +FD++ +W+ E+ ++ V ++LVGNKCDL
Sbjct: 68 QERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLV 127
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSNV 181
S R V+++EG+ LA++ G+ F+ETSA ++ NV+ AF + EI V
Sbjct: 128 SKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRV 174
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 172 bits (435), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 78/163 (47%), Positives = 119/163 (73%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
YLFK+++IGDS VGKS LL R+A + + +TIGV+F+ +++E+DGK +K QIWDTAG
Sbjct: 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 74
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
QERFR +TS+YYRGA G ++VYD+T + +F+++ +WL E+ ++ V ++LVGNKCDL
Sbjct: 75 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 134
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
+ + V K A++ G+ F+ETSA ++TNV+ +F + EI
Sbjct: 135 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 171 bits (434), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 78/163 (47%), Positives = 119/163 (73%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
YLFK+++IGDS VGKS LL R+A + + +TIGV+F+ +++E+DGK +K QIWDTAG
Sbjct: 5 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 64
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
QERFR +TS+YYRGA G ++VYD+T + +F+++ +WL E+ ++ V ++LVGNKCDL
Sbjct: 65 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 124
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
+ + V K A++ G+ F+ETSA ++TNV+ +F + EI
Sbjct: 125 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 171 bits (433), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 78/163 (47%), Positives = 119/163 (73%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
YLFK+++IGDS VGKS LL R+A + + +TIGV+F+ +++E+DGK +K QIWDTAG
Sbjct: 24 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 83
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
QERFR +TS+YYRGA G ++VYD+T + +F+++ +WL E+ ++ V ++LVGNKCDL
Sbjct: 84 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 143
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
+ + V K A++ G+ F+ETSA ++TNV+ +F + EI
Sbjct: 144 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 171 bits (432), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 78/163 (47%), Positives = 118/163 (72%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
YLFK+++IGDS VGKS LL R+A + + +TIGV+F+ +++E+DGK +K QIWDTAG
Sbjct: 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 91
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
QERFR +TS+YYRGA G ++VYD+T + +F+++ +WL E+ ++ V ++LVGNKCDL
Sbjct: 92 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 151
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
+ + V K A++ G+ F+ETSA ++TNV+ +F EI
Sbjct: 152 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 170 bits (431), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 77/163 (47%), Positives = 119/163 (73%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
YLFK+++IGDS VGK+ LL R+A + + +TIGV+F+ +++E+DGK +K QIWDTAG
Sbjct: 15 YLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 74
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
QERFR +TS+YYRGA G ++VYD+T + +F+++ +WL E+ ++ V ++LVGNKCDL
Sbjct: 75 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 134
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
+ + V K A++ G+ F+ETSA ++TNV+ +F + EI
Sbjct: 135 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 169 bits (427), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 118/162 (72%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75
LFK+++IGDS VGKS LL R+A + + +TIGV+F+ +++E+DGK +K QIWDTAGQ
Sbjct: 6 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLES 135
ERFR +TS+YYRGA G ++VYD+T + +F+++ +WL E+ ++ V ++LVGNKCDL +
Sbjct: 66 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 125
Query: 136 IRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
+ V K A++ G+ F+ETSA ++TNV+ +F + EI
Sbjct: 126 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 168 bits (425), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 76/160 (47%), Positives = 115/160 (71%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
Y+FKI+IIG+S+VGK++ L RYA + F P +T+G++F+ +++ + K +K QIWDTAG
Sbjct: 4 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG 63
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
QER+R +T+AYYRGA+G +++YDIT +F+++ W ++KT+S +LVGNKCD+E
Sbjct: 64 QERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME 123
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVI 174
R VS+E G+ LA+ G F E SA D+ NVK FE ++
Sbjct: 124 DERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 163
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 168 bits (425), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 121/172 (70%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
YLFK+++IGDS VGKS LL R+A + + +TIGV+F+ +++E+DGK +K QIWDTAG
Sbjct: 8 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 67
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
QERFR +TS+YYRGA G ++VYD+T + ++ ++ +WL E+ ++ V ++LVGNK DL
Sbjct: 68 QERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLT 127
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSNVSRKVL 186
+ + V K A++ G+ F+ETSA ++TNV+ AF + EI + +VL
Sbjct: 128 TKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGLEVL 179
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 167 bits (424), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 77/163 (47%), Positives = 118/163 (72%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
YLFK+++IGDS VGKS LL R+A + + +TIGV+F+ +++E+DGK +K QIWDTAG
Sbjct: 7 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 66
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
QERFR +TS+YYRGA G ++VYD+T + +F+++ +WL E+ ++ V ++LVG KCDL
Sbjct: 67 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLT 126
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
+ + V K A++ G+ F+ETSA ++TNV+ +F + EI
Sbjct: 127 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 166 bits (420), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 77/163 (47%), Positives = 117/163 (71%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
YLFK+++IGDS VGKS LL R+A + + +TIGV+F+ +++E+DGK +K QIWDTAG
Sbjct: 8 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 67
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
QERFR +TS+YYRGA G ++VYD+T + ++ ++ +WL E+ ++ V ++LVGNK DL
Sbjct: 68 QERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLT 127
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
+ + V K A++ G+ F+ETSA ++TNV+ AF + EI
Sbjct: 128 TKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 164 bits (416), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 118/168 (70%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
Y+FK++IIG+S+VGK++ L RYA + F P +T+G++F+ +++ K VK QIWDTAG
Sbjct: 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAG 81
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
QER+R +T+AYYRGA+G +++YDIT +F+++ W ++KT+S +LVGNKCD+E
Sbjct: 82 QERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME 141
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSNVS 182
R V TE+G+ LAE G F E SA ++ +V+ AFE ++ I +S
Sbjct: 142 EERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 164 bits (416), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 75/160 (46%), Positives = 116/160 (72%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K+++IGDS VGKS LL R+A + + +TIGV+F+ +++E+DGK +K QIWDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIR 137
FR +TS+YYRGA G ++VYD+T + +F+++ +WL E+ ++ V ++LVGNKCDL + +
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 138 NVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
V K A++ G+ F+ETSA ++TNV+ +F + EI
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 164 bits (415), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 75/155 (48%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75
+ KI++IGDS VGKS LL R+ ++FNP TIG++F+ ++++I+GK+VK QIWDTAGQ
Sbjct: 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 62
Query: 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLES 135
ERFR +T+AYYRGA+G ++VYDIT TF +I +W + H++ +LVGNK D+E+
Sbjct: 63 ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 122
Query: 136 IRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAF 170
R V+ ++G++LA+ G+ F+E+SA + NV F
Sbjct: 123 -RVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 156
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 163 bits (413), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 121/168 (72%), Gaps = 6/168 (3%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
+LFK+V++GD++VGK+ ++ R+ F+ +TIGV+F +++EI GK VK QIWDTAG
Sbjct: 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAG 87
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
QERFR +T +YYR A GA++ YDIT+R++F S+ W+++++ ++ + + ++L+GNK DL
Sbjct: 88 QERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS 147
Query: 135 SIRNVSTEEGKSLAEA-EGLFFMETSALDSTNVKSAF-----EIVIRE 176
+R VS E +SLAE + L +ETSA DS+NV+ AF E+++R
Sbjct: 148 ELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRH 195
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 162 bits (410), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75
+ KI++IGDS VGKS LL R+ ++FNP TIG++F+ ++++I+GK+VK Q+WDTAGQ
Sbjct: 20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 79
Query: 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLES 135
ERFR +T+AYYRGA+G ++VYD+T TF +I +W + H++ +LVGNK D+E+
Sbjct: 80 ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 139
Query: 136 IRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAF 170
R V+ ++G++LA+ G+ F+E+SA + NV F
Sbjct: 140 -RVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 173
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 162 bits (410), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75
+ KI++IGDS VGKS LL R+ ++FNP TIG++F+ ++++I+GK+VK Q+WDTAGQ
Sbjct: 7 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLES 135
ERFR +T+AYYRGA+G ++VYD+T TF +I +W + H++ +LVGNK D+E+
Sbjct: 67 ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 126
Query: 136 IRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAF 170
R V+ ++G++LA+ G+ F+E+SA + NV F
Sbjct: 127 -RVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 160
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 161 bits (407), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 78/176 (44%), Positives = 115/176 (65%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
Y FKI+IIG+S+VGK++ L RYA + F P +T+G++F+ +++ + K +K QIWDTAG
Sbjct: 7 YXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG 66
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
ER+R +T+AYYRGA G ++ YDIT +F+++ W ++KT+S +LVGNKCD E
Sbjct: 67 LERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXE 126
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSNVSRKVLNSDS 190
R VS+E G+ LA+ G F E SA D+ NVK FE ++ I S + +D
Sbjct: 127 DERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSESLDTADP 182
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 161 bits (407), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 112/160 (70%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
Y+FK+++IG+S+VGK++ L RYA + F P +T+G++F+ +++ K +K QIWDTAG
Sbjct: 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAG 80
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
QER+R +T+AYYRGA+G L++YDI + +F ++ W ++KT+S +LVGNKCDLE
Sbjct: 81 QERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE 140
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVI 174
R V E+G+ LA+ G F E SA ++ NVK FE ++
Sbjct: 141 DERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV 180
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 161 bits (407), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 75/153 (49%), Positives = 110/153 (71%), Gaps = 1/153 (0%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
KI++IGDS VGKS LL R+ ++FNP TIG++F+ ++++I+GK+VK QIWDTAGQER
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIR 137
FR +T+AYYRGA G ++VYDIT TF +I +W + H++ +LVGNK D E+ R
Sbjct: 65 FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXET-R 123
Query: 138 NVSTEEGKSLAEAEGLFFMETSALDSTNVKSAF 170
V+ ++G++LA+ G+ F+E+SA + NV F
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIF 156
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 160 bits (406), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 112/175 (64%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
+LFK ++IG + GKS LL ++ N+F S TIGVEF ++ + + GK VK QIWDTAG
Sbjct: 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAG 83
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
QERFR+VT +YYRGA GAL+VYDIT R T++S++ WL + +T + + +L GNK DL+
Sbjct: 84 QERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD 143
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSNVSRKVLNSD 189
R V+ E A+ L F+ETSAL NV+ AF R I + + L+ +
Sbjct: 144 PEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELDPE 198
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 159 bits (402), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 73/153 (47%), Positives = 110/153 (71%), Gaps = 1/153 (0%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
KI++IGDS VGKS LL R+ ++FNP TIG++F+ ++++I+GK+VK Q+WDTAGQER
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIR 137
FR +T+AYYRGA G ++VYD+T TF +I +W + H++ +LVGNK D E+ R
Sbjct: 65 FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXET-R 123
Query: 138 NVSTEEGKSLAEAEGLFFMETSALDSTNVKSAF 170
V+ ++G++LA+ G+ F+E+SA + NV F
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIF 156
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 157 bits (398), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 117/174 (67%), Gaps = 5/174 (2%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
+LFK++IIGDS VGKS+LL R+A N F+ TIGV+F+ +++EI+G++VK QIWDTAG
Sbjct: 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAG 67
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
QERFR +TS YYRG G ++VYD+T +F ++ RWL E+ + D V R+LVGNK D
Sbjct: 68 QERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDP 126
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAF----EIVIREIYSNVSRK 184
+ V TE+ A G+ ETSA ++ NV+ F E+V+R N++++
Sbjct: 127 ERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQ 180
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 157 bits (396), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 113/175 (64%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
+LFK ++IG++ GKS LL ++ +F S TIGVEF ++ + + GK VK QIWDTAG
Sbjct: 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG 68
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
QERFR+VT +YYRGA GAL+VYDIT R T+++++ WL + + + + +L GNK DL+
Sbjct: 69 QERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 128
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSNVSRKVLNSD 189
+ R V+ E A+ L F+ETSAL NV+ AF R+I + + L+ +
Sbjct: 129 ADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELDPE 183
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 108/156 (69%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
+LFKIV+IG++ VGK+ L+ R+ + F P ATIGV+F +++EI+G++VK QIWDTAG
Sbjct: 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAG 84
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
QERFR++T +YYR A ++ YDIT +F + WL E++ ++ V +LVGNK DL
Sbjct: 85 QERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA 144
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAF 170
R VS + + +EA+ ++++ETSA +S NV+ F
Sbjct: 145 ERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF 180
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 154 bits (389), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 111/173 (64%), Gaps = 8/173 (4%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
+LFK ++IG++ GKS LL ++ +F S TIGVEF ++ + + GK VK QIWDTAG
Sbjct: 10 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG 69
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
QERFR+VT +YYRGA GAL+VYDIT R T+++++ WL + + + + +L GNK DL+
Sbjct: 70 QERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 129
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSNVSRKVLN 187
+ R V+ E A+ L F+ETSAL +V+ AF +RK+LN
Sbjct: 130 ADREVTFLEASRFAQENELMFLETSALTGEDVEEAF--------VQCARKILN 174
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 106/162 (65%), Gaps = 2/162 (1%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
KI+IIG+S VGKS+LL R+ + F+P ATIGV+F+ +++ +DG + K IWDTAGQE
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTH-SDTTVARMLVGNKCDLES 135
RFR +T +YYRGA G ++VYD+TRR TF + WL+EL+T+ + + LVGNK D E+
Sbjct: 76 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDKEN 135
Query: 136 IRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V EG A F+E SA V+ AFE ++ +I
Sbjct: 136 -REVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKI 176
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 152 bits (383), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 109/162 (67%), Gaps = 1/162 (0%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHS-KATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75
FK++++GDS VGK+ LL R+ F + +T+G++F+ + +++DG +VK Q+WDTAGQ
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLES 135
ERFR+VT AYYR A L++YD+T + +FD+I WL E+ ++ VA ML+GNK D
Sbjct: 71 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130
Query: 136 IRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V E+G+ LA+ GL FMETSA NV AF + +E+
Sbjct: 131 ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 151 bits (382), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 110/173 (63%), Gaps = 8/173 (4%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
+LFK ++IG++ GKS LL ++ +F S TIGVEF ++ + + GK VK QIWDTAG
Sbjct: 7 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG 66
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
ERFR+VT +YYRGA GAL+VYDIT R T+++++ WL + + + + +L GNK DL+
Sbjct: 67 LERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 126
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSNVSRKVLN 187
+ R V+ E A+ L F+ETSAL +V+ AF +RK+LN
Sbjct: 127 ADREVTFLEASRFAQENELMFLETSALTGEDVEEAF--------VQCARKILN 171
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 147 bits (370), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 104/160 (65%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K+V++GD GKS+L+ R+ +++F ++TIG F +Q++ ++ VK +IWDTAGQER
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIR 137
+ ++ YYRGA A+IV+D+T + +F+ +W+ EL+ + + L GNK DL R
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 138 NVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
V+ E+ ++ A+ GLFFMETSA +TNVK F + R +
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 147 bits (370), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 105/161 (65%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
FK+V++G+SAVGKS+L+ R+ + +F+ + ++TIG F TQS+ +D VK +IWDTAGQE
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
R+ ++ YYRGA A++VYDIT + TF W+ EL+ + ++ L GNK DL +
Sbjct: 69 RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Query: 137 RNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V EE ++ A+ L FMETSA + NV F + +++
Sbjct: 129 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 111/168 (66%), Gaps = 1/168 (0%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
+ +++IIG VGK++L+ R+ + F K+T+GV+F+ +++E+ GK+++ QIWDTAG
Sbjct: 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAG 84
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
QERF ++TSAYYR A G ++VYDIT++ TFD + +W+ + ++ +LVGNK D E
Sbjct: 85 QERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 144
Query: 135 SIRNVSTEEGKSLAEA-EGLFFMETSALDSTNVKSAFEIVIREIYSNV 181
+ R ++ ++G+ A+ G+ F E SA D+ NV F ++ +I +
Sbjct: 145 TDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 145 bits (365), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 103/161 (63%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
FK+V++G+SAVGKS+L+ R+ + +F+ + ++TIG F TQ++ +D VK +IWDTAGQE
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
R+ ++ YYRGA A++VYDIT TF W+ EL+ + + L GNK DL S
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 137 RNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V +E ++ A+ L FMETSA + NV F + +++
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 144 bits (362), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 103/164 (62%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
FK+V++G+SAVGKS+L+ R+ + +F+ ++TIG F TQ++ +D VK +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
R+ ++ YYRGA A++VYDIT +F W+ EL+ + + L GNK DL +
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 137 RNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSN 180
R V +E +S A+ L FMETSA S NV F + +++ N
Sbjct: 128 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 171
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 144 bits (362), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 103/164 (62%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
FK+V++G+SAVGKS+L+ R+ + +F+ ++TIG F TQ++ +D VK +IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
R+ ++ YYRGA A++VYDIT +F W+ EL+ + + L GNK DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 137 RNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSN 180
R V +E +S A+ L FMETSA S NV F + +++ N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 144 bits (362), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 101/163 (61%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K+ ++GD+ VGKS+++ R+ + F+P+ TIG F T++++ + K IWDTAGQE
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
RFRA+ YYRG+ A+IVYDIT+ TF ++ W+ EL+ H ++ + GNKCDL +
Sbjct: 66 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 137 RNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYS 179
R V + K A++ F+ETSA ++ N+ F + R I S
Sbjct: 126 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 168
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 144 bits (362), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 107/157 (68%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
FK+V +G+ +VGK++L++R+ + F+ +ATIG++F +++M ++ + V+ Q+WDTAGQE
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
RFR++ +Y R + A++VYDIT +F S+W+D+++T + V MLVGNK DL
Sbjct: 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 137 RNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIV 173
R VSTEEG+ A+ + F+ETSA NVK F V
Sbjct: 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 143 bits (361), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 103/161 (63%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K+ ++GD+ VGKS+++ R+ ++ F+ + TIG F T+++ + K IWDTAGQE
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
RF ++ YYRG+ A+IVYDIT++ +F ++ +W+ ELK H + + GNKCDL I
Sbjct: 84 RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 137 RNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V ++ K AE+ G +ETSA ++ N++ F+ + R+I
Sbjct: 144 REVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 142 bits (359), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 102/164 (62%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
FK+V++G+S VGKS+L+ R+ + +F+ ++TIG F TQ++ +D VK +IWDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
R+ ++ YYRGA A++VYDIT +F W+ EL+ + + L GNK DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 137 RNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSN 180
R V +E +S A+ L FMETSA S NV F + +++ N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 102/164 (62%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
FK+V++G+S VGKS+L+ R+ + +F+ ++TIG F TQ++ +D VK +IWDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
R+ ++ YYRGA A++VYDIT +F W+ EL+ + + L GNK DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 137 RNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSN 180
R V +E +S A+ L FMETSA S NV F + +++ N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 102/161 (63%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
FK+V++G+SAVGKS+L+ R+ + +F+ + ++TI F TQ++ +D VK +IWDTAGQE
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
R+ ++ YYRGA A++VYDIT TF W+ EL+ + + L GNK DL S
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 137 RNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V +E ++ A+ L FMETSA + NV F + +++
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 102/161 (63%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
FK+V++G+SAVGKS+L+ R+ + +F+ + ++TIG F TQ++ +D VK +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
R+ ++ YYRGA A++VYDIT TF W+ EL+ + + L GNK DL S
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 137 RNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V +E ++ A+ L FMETSA + NV F + +++
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 102/164 (62%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
FK+V++G+SAVGKS+L+ R+ + +F+ ++TIG F TQ++ +D VK +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
R+ ++ YYRGA A++VYDIT +F W+ EL+ + + L GNK DL +
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 137 RNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSN 180
R V +E +S A+ L F ETSA S NV F + +++ N
Sbjct: 128 RAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLPKN 171
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 102/164 (62%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
FK+V++G+S VGKS+L+ R+ + +F+ ++TIG F TQ++ +D VK +IWDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
R+ ++ YYRGA A++VYDIT +F W+ EL+ + + L GNK DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 137 RNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSN 180
R V +E +S A+ L FMETSA S NV F + +++ N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 102/164 (62%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
FK+V++G+S VGKS+L+ R+ + +F+ ++TIG F TQ++ +D VK +IWDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
R+ ++ YYRGA A++VYDIT +F W+ EL+ + + L GNK DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 137 RNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSN 180
R V +E +S A+ L FMETSA S NV F + +++ N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 102/164 (62%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
FK+V++G+S VGKS+L+ R+ + +F+ ++TIG F TQ++ +D VK +IWDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
R+ ++ YYRGA A++VYDIT +F W+ EL+ + + L GNK DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 137 RNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSN 180
R V +E +S A+ L FMETSA S NV F + +++ N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 141 bits (356), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 106/157 (67%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
FK+V +G+ +VGK++L++R+ + F+ +ATIG++F +++M ++ + ++ Q+WDTAGQE
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
RFR++ +Y R + A++VYDIT +F ++W+D+++T + V MLVGNK DL
Sbjct: 67 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 137 RNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIV 173
R VS EEG+ A+ + F+ETSA NVK F V
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 141 bits (355), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 105/167 (62%), Gaps = 6/167 (3%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+KIV+ GD+AVGKS+ L R +NEF + AT+GV+FQ +++ +DG+ Q+WDTAGQE
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDL--- 133
RFR++ +Y+R A G L++YD+T +F +I W+D ++ + TV MLVGNK D+
Sbjct: 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148
Query: 134 ---ESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
E + V G+ LA G F ETSA D +N+ A + RE+
Sbjct: 149 AATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 141 bits (355), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 100/163 (61%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K+ ++GD+ VGKS+++ R+ + F+P+ TIG F T++++ + K IWDTAG E
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
RFRA+ YYRG+ A+IVYDIT+ TF ++ W+ EL+ H ++ + GNKCDL +
Sbjct: 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 137 RNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYS 179
R V + K A++ F+ETSA ++ N+ F + R I S
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 169
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 141 bits (355), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 105/154 (68%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
FK+V +G+ +VGK++L++R+ + F+ +ATIG++F +++M ++ + V+ Q+WDTAGQE
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
RFR++ +Y R + A++VYDIT +F S+W+D+++T + V MLVGNK DL
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 137 RNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAF 170
R ++ EEG+ A+ + F+ETSA NVK F
Sbjct: 123 RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLF 156
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 140 bits (354), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 105/154 (68%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
FK+V +G+ +VGK++L++R+ + F+ +ATIG++F +++M ++ + V+ Q+WDTAGQE
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
RFR++ +Y R + A++VYDIT +F ++W+D+++T + V MLVGNK DL
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 137 RNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAF 170
R VS EEG+ A+ + F+ETSA NVK F
Sbjct: 122 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 155
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 140 bits (352), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 108/167 (64%), Gaps = 6/167 (3%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75
LFKI+++GD VGKS+L++RY N+F+ TIGVEF + +E+DG V QIWDTAGQ
Sbjct: 11 LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDT----TVARMLVGNKC 131
ERFR++ + +YRG+ L+ + + +F ++S W E ++D + +++GNK
Sbjct: 71 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 132 DLESIRNVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIREI 177
D++ R VSTEE ++ + G + + ETSA DSTNV +AFE +R I
Sbjct: 131 DIKE-RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 101/161 (62%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
FK+V++G+SAVGKS+L+ R+ + +F+ ++TIG F TQ++ +D VK +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
R+ ++ YYRGA A++VYDIT +F W+ EL+ + + L GNK DL +
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 137 RNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V +E +S A+ L FMETSA S NV F + +++
Sbjct: 126 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 89/115 (77%)
Query: 19 IVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERF 78
+++IGDS VGKS LL R+A + + +TIGV+F+ +++E+DGK +K QIWDTAGQERF
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 79 RAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDL 133
R +TS+YYRGA G ++VYD+T + +F+++ +WL E+ ++ V ++LVGNKCDL
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 105/157 (66%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
FK+V +G+ +VGK++L++R+ + F+ +ATIG++F +++M ++ + ++ Q+WDTAG E
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
RFR++ +Y R + A++VYDIT +F ++W+D+++T + V MLVGNK DL
Sbjct: 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 137 RNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIV 173
R VS EEG+ A+ + F+ETSA NVK F V
Sbjct: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 170
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 137 bits (345), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 105/157 (66%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
FK+V +G+ +VGK++L++R+ + F+ +ATIG++F +++M ++ + V+ Q+WDTAG E
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
RFR++ +Y R + A++VYDIT +F ++W+D+++T + V MLVGNK DL
Sbjct: 67 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 137 RNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIV 173
R VS EEG+ A+ + F+ETSA NVK F V
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 137 bits (345), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 107/167 (64%), Gaps = 6/167 (3%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75
LFK++++GD VGKS+L++RY N+F+ TIGVEF + +E+DG V QIWDTAGQ
Sbjct: 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDT----TVARMLVGNKC 131
ERFR++ + +YRG+ L+ + + +F ++S W E ++D + +++GNK
Sbjct: 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 132 DLESIRNVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIREI 177
D+ S R VSTEE ++ G + + ETSA D+TNV +AFE +R +
Sbjct: 127 DI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 137 bits (345), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 107/167 (64%), Gaps = 6/167 (3%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75
LFK++++GD VGKS+L++RY N+F+ TIGVEF + +E+DG V QIWDTAGQ
Sbjct: 9 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDT----TVARMLVGNKC 131
ERFR++ + +YRG+ L+ + + +F ++S W E ++D + +++GNK
Sbjct: 69 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 132 DLESIRNVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIREI 177
D+ S R VSTEE ++ G + + ETSA D+TNV +AFE +R +
Sbjct: 129 DI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 137 bits (344), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 105/157 (66%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
FK+V +G+ +VGK++L++R+ + F+ +ATIG++F +++M ++ + V+ Q+WDTAG E
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
RFR++ +Y R + A++VYDIT +F ++W+D+++T + V MLVGNK DL
Sbjct: 77 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 136
Query: 137 RNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIV 173
R VS EEG+ A+ + F+ETSA NVK F V
Sbjct: 137 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 173
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 136 bits (343), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 94/156 (60%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
Y FK+V++G+ VGK++L+ RY N+FN T+G F T+ + I GK V IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
QERF A+ YYR + GA++VYDIT +F + W+ EL+ + +VGNK DLE
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAF 170
R+VS +E +S AE+ G TSA + ++ F
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 136 bits (343), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 106/170 (62%), Gaps = 5/170 (2%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75
+FKI++IGDS VGK+ L R+ F ++ATIGV+F+ ++++IDG+ +K Q+WDTAGQ
Sbjct: 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 76 ERFR-AVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTH-SDTTVARMLVGNKCDL 133
ERFR ++ YYR + VYD+T +F S+ W++E K H + R+LVGNKCDL
Sbjct: 80 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 134 ESIRNVSTEEGKSLAEAEGLFFMETSAL---DSTNVKSAFEIVIREIYSN 180
S V T+ + A+ + ETSA D+ +V++ F + ++ S+
Sbjct: 140 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSH 189
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 136 bits (343), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 108/169 (63%), Gaps = 6/169 (3%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75
L K++++GD VGKS+L++RY N+F+ + TIGVEF + +E+DG+ V QIWDTAGQ
Sbjct: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTT----VARMLVGNKC 131
ERF+++ + +YRGA L+ + + R +F+++ W E ++D +++GNK
Sbjct: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 132 DLESIRNVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIREIYS 179
D E R V+TEE ++ G + ++ETSA D TNV AFE +R++ +
Sbjct: 127 DKED-RQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLA 174
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 104/170 (61%), Gaps = 5/170 (2%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75
+FKI++IGDS VGK+ L R+ F ++ATIGV+F+ ++++IDG+ +K Q+WDTAGQ
Sbjct: 29 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 76 ERFR-AVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTH-SDTTVARMLVGNKCDL 133
ERFR ++ YYR + VYD T +F S+ W++E K H + R+LVGNKCDL
Sbjct: 89 ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 148
Query: 134 ESIRNVSTEEGKSLAEAEGLFFMETSAL---DSTNVKSAFEIVIREIYSN 180
S V T+ + A+ ETSA D+ +V++ F + ++ S+
Sbjct: 149 RSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKLKSH 198
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 133 bits (335), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 95/156 (60%), Gaps = 3/156 (1%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K+V++G++AVGKS+++ R+ N+F + + TIG F TQ + I+ VK +IWDTAGQER
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDL---E 134
F ++ YYR A AL+VYD+T+ +F W+ EL + + LVGNK D
Sbjct: 65 FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAF 170
R V+ EEG+ LAE +GL F ETSA NV F
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 133 bits (335), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 93/156 (59%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
Y FK+V++G+ VGK++L+ RY N+FN T+ F T+ + I GK V IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
QERF A+ YYR + GA++VYDIT +F + W+ EL+ + +VGNK DLE
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAF 170
R+VS +E +S AE+ G TSA + ++ F
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 133 bits (335), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 93/156 (59%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
Y FK+V++G+ VGK++L+ RY N+FN T+ F T+ + I GK V IWDTAG
Sbjct: 19 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134
QERF A+ YYR + GA++VYDIT +F + W+ EL+ + +VGNK DLE
Sbjct: 79 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 138
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAF 170
R+VS +E +S AE+ G TSA + ++ F
Sbjct: 139 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 174
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 102/155 (65%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+K+V +G+ AVGK+++++R+ + F+ + ++TIG++F ++++ +D V+ Q+WDTAGQE
Sbjct: 2 YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
RFR++ +Y R + A++VYDIT R +F++ ++W+ ++ V LVGNK DL +
Sbjct: 62 RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 137 RNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFE 171
R V+ EEG A+ F ETSA N+K F+
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFK 156
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 111/169 (65%), Gaps = 11/169 (6%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKA-QIWDTAG 74
+ K++I+GDS VGK++L+ RY ++++ KATIG +F T+ + +DG +V Q+WDTAG
Sbjct: 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDT----TVARMLVGNK 130
QERF+++ A+YRGA ++VYD+T ++F++I W DE H++ T +++GNK
Sbjct: 68 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 131 CDLESIRNVSTEE-GKSLAEAEG---LFFMETSALDSTNVKSAFEIVIR 175
D E + + +E+ + LA++ G LF TSA ++ NV +AFE + R
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLFL--TSAKNAINVDTAFEEIAR 174
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 109/182 (59%), Gaps = 11/182 (6%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEID----------GKE 64
YL K + +GDS VGK+++L +Y +FN T+G++F+ + + G+
Sbjct: 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQR 69
Query: 65 VKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVAR 124
+ Q+WDTAG ERFR++T+A++R A+G L+++D+T +F ++ W+ +L+ H+ +
Sbjct: 70 IHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD 129
Query: 125 M-LVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSNVSR 183
+ L GNK DLE R V EE + LAE G+ + ETSA + TN+ A E+++ I + R
Sbjct: 130 IVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRMER 189
Query: 184 KV 185
V
Sbjct: 190 SV 191
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 127 bits (320), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 110/182 (60%), Gaps = 11/182 (6%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGK----------E 64
YL K++ +GDS VGK+ L RY N+FNP T+G++F+ + + + + +
Sbjct: 24 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFK 83
Query: 65 VKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVAR 124
V Q+WDTAGQERFR++T+A++R A+G L+++D+T + +F ++ W+ +L+ ++
Sbjct: 84 VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD 143
Query: 125 M-LVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSNVSR 183
+ L+GNK DL R V+ + + LA+ G+ + ETSA NV+ A E ++ I + +
Sbjct: 144 IVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQ 203
Query: 184 KV 185
V
Sbjct: 204 CV 205
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 127 bits (318), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 106/165 (64%), Gaps = 6/165 (3%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75
L K++I+GDS VGK++L+++Y +F+ KATIG +F T+ + +D + V QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDT----TVARMLVGNKC 131
ERF+++ A+YRGA ++V+D+T TF ++ W DE + +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 132 DLESIRNVSTEEGKSLAEAE-GLFFMETSALDSTNVKSAFEIVIR 175
DLE+ R V+T+ ++ ++ + + ETSA ++ NV+ AF+ + R
Sbjct: 128 DLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 126 bits (317), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 106/165 (64%), Gaps = 6/165 (3%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75
L K++I+GDS VGK++L+++Y +F+ KATIG +F T+ + +D + V QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDT----TVARMLVGNKC 131
ERF+++ A+YRGA ++V+D+T TF ++ W DE + +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 132 DLESIRNVSTEEGKSLAEAE-GLFFMETSALDSTNVKSAFEIVIR 175
DLE+ R V+T+ ++ ++ + + ETSA ++ NV+ AF+ + R
Sbjct: 128 DLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 126 bits (317), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 110/182 (60%), Gaps = 11/182 (6%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEID--------GK--E 64
YL K++ +GDS VGK+ L RY N+FNP T+G++F+ + + D GK +
Sbjct: 10 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFK 69
Query: 65 VKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVAR 124
V Q+WDTAG ERFR++T+A++R A+G L+++D+T + +F ++ W+ +L+ ++
Sbjct: 70 VHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD 129
Query: 125 M-LVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSNVSR 183
+ L+GNK DL R V+ + + LAE G+ + ETSA NV+ + E ++ I + +
Sbjct: 130 IVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEK 189
Query: 184 KV 185
V
Sbjct: 190 CV 191
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 126 bits (317), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 110/182 (60%), Gaps = 11/182 (6%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEID--------GK--E 64
YL K++ +GDS VGK+ L RY N+FNP T+G++F+ + + D GK +
Sbjct: 10 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFK 69
Query: 65 VKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVAR 124
V Q+WDTAG ERFR++T+A++R A+G L+++D+T + +F ++ W+ +L+ ++
Sbjct: 70 VHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD 129
Query: 125 M-LVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSNVSR 183
+ L+GNK DL R V+ + + LAE G+ + ETSA NV+ + E ++ I + +
Sbjct: 130 IVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEK 189
Query: 184 KV 185
V
Sbjct: 190 CV 191
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 105/165 (63%), Gaps = 6/165 (3%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75
L K++I+GDS VGK++L+++Y +F+ KATIG +F T+ + +D + V QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDT----TVARMLVGNKC 131
ERF+++ A+YRGA ++V+D+T TF ++ W DE + +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 132 DLESIRNVSTEEGKSLAEAE-GLFFMETSALDSTNVKSAFEIVIR 175
D E+ R V+T+ ++ ++ + + ETSA ++ NV+ AF+ + R
Sbjct: 128 DFEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 124 bits (310), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 105/165 (63%), Gaps = 6/165 (3%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75
L K++I+GDS VGK++L+++Y +F+ KATIG +F T+ + +D + V QIWDTAG
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDT----TVARMLVGNKC 131
ERF+++ A+YRGA ++V+D+T TF ++ W DE + +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 132 DLESIRNVSTEEGKSLAEAE-GLFFMETSALDSTNVKSAFEIVIR 175
DLE+ R V+T+ ++ ++ + + ETSA ++ NV+ AF+ + R
Sbjct: 128 DLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 103/171 (60%), Gaps = 11/171 (6%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEID--------GK--E 64
YL K++ +GDS VGK+ L RY N+FNP T+G++F+ + + D GK +
Sbjct: 10 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFK 69
Query: 65 VKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVAR 124
V Q+WDTAG ERFR++T+A++R A G L+ +D+T + +F ++ W +L+ ++
Sbjct: 70 VHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPD 129
Query: 125 M-LVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVI 174
+ L+GNK DL R V+ + + LAE G+ + ETSA NV+ + E ++
Sbjct: 130 IVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLL 180
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 103/171 (60%), Gaps = 11/171 (6%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEID--------GK--E 64
YL K++ +GDS VGK+ L RY N+FNP T+G++F+ + + D GK +
Sbjct: 10 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFK 69
Query: 65 VKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVAR 124
V Q+WDTAG ERFR++T+A++R A G L+ +D+T + +F ++ W +L+ ++
Sbjct: 70 VHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPD 129
Query: 125 M-LVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVI 174
+ L+GNK DL R V+ + + LAE G+ + ETSA NV+ + E ++
Sbjct: 130 IVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLL 180
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 93/156 (59%), Gaps = 3/156 (1%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K+V++G+ AVGKS+++ RY + F K TIGV+F + ++++ ++V+ +WDTAGQE
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTH-SDTTVARMLVGNKCDLES 135
F A+T AYYRGA ++V+ T R +F++IS W +++ D A LV NK DL
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTA--LVQNKIDLLD 123
Query: 136 IRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFE 171
+ EE + LA+ L F TS + NV F+
Sbjct: 124 DSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFK 159
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 101/202 (50%), Gaps = 40/202 (19%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGK------------- 63
+K V++G+S+VGKS+++ R ++ F+ ++ TIG F T + ++
Sbjct: 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 64 ------------------------EVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDIT 99
+K IWDTAGQER+ ++ YYRGA A++V+DI+
Sbjct: 68 INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 100 RRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETS 159
T D W+++LK S+ + +LV NK D + V E + A+ L F++TS
Sbjct: 128 NSNTLDRAKTWVNQLKISSNYII--ILVANKIDKNKFQ-VDILEVQKYAQDNNLLFIQTS 184
Query: 160 ALDSTNVKSAFEIVIREIYSNV 181
A TN+K+ F ++ EIY N+
Sbjct: 185 AKTGTNIKNIFYMLAEEIYKNI 206
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+K+V++G VGKS L + +N F TI ++ Q + IDG+ I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 63
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLES 135
+ A+ Y R G L V+ I +F+ I + +++K D+ V +LVGNKCDL S
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123
Query: 136 IRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V T++ + LA + G+ F+ETSA V AF ++REI
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 93/163 (57%), Gaps = 2/163 (1%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75
L K++++G VGKS L ++ +EF + T ++ + + +DG+EV+ I DTAGQ
Sbjct: 14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 72
Query: 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDE-LKTHSDTTVARMLVGNKCDLE 134
E + A+ Y+R G L V+ IT +F + + + ++ L+ D V +LVGNK DLE
Sbjct: 73 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
R VS EE K+ AE + ++ETSA NV F ++REI
Sbjct: 133 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 93/163 (57%), Gaps = 2/163 (1%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75
L K++++G VGKS L ++ +EF + T ++ + + +DG+EV+ I DTAGQ
Sbjct: 18 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 76
Query: 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDE-LKTHSDTTVARMLVGNKCDLE 134
E + A+ Y+R G L V+ IT +F + + + ++ L+ D V +LVGNK DLE
Sbjct: 77 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
R VS EE K+ AE + ++ETSA NV F ++REI
Sbjct: 137 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 93/163 (57%), Gaps = 2/163 (1%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75
L K++++G VGKS L ++ +EF + T ++ + + +DG+EV+ I DTAGQ
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 64
Query: 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDE-LKTHSDTTVARMLVGNKCDLE 134
E + A+ Y+R G L V+ IT +F + + + ++ L+ D V +LVGNK DLE
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
R VS EE K+ AE + ++ETSA NV F ++REI
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 93/163 (57%), Gaps = 2/163 (1%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75
L K++++G VGKS L ++ +EF + T ++ + + +DG+EV+ I DTAGQ
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 62
Query: 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDE-LKTHSDTTVARMLVGNKCDLE 134
E + A+ Y+R G L V+ IT +F + + + ++ L+ D V +LVGNK DLE
Sbjct: 63 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
R VS EE K+ A+ + ++ETSA NV F ++REI
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 97.8 bits (242), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 2/163 (1%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75
L K++++G VGKS L ++ +EF + T ++ + + +DG+EV+ I DTAG
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 64
Query: 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDE-LKTHSDTTVARMLVGNKCDLE 134
E + A+ Y+R G L V+ IT +F + + + ++ L+ D V +LVGNK DLE
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
R VS EE K+ AE + ++ETSA NV F ++REI
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 91/162 (56%), Gaps = 3/162 (1%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+K+V++G VGKS L + +N F TI ++ Q + IDG+ I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLES 135
+ A+ Y R G L V+ I +F+ I ++ +++K D+ V +LVGNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 136 IRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V + + + LA + G+ ++ETSA V+ AF ++REI
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 91/162 (56%), Gaps = 3/162 (1%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+K+V++G VGKS L + +N F TI ++ Q + IDG+ I DTAGQE
Sbjct: 4 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLES 135
+ A+ Y R G L V+ I +F+ I ++ +++K D+ V +LVGNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 136 IRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V + + + LA + G+ ++ETSA V+ AF ++REI
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+K+V++G VGKS L + +N F TI ++ Q + IDG+ I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLES 135
+ A+ Y R G L V+ I +F+ I ++ +++K D+ V +LVGNKCDL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAG 122
Query: 136 IRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V + + + LA + G+ ++ETSA V+ AF ++REI
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 96.7 bits (239), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 91/162 (56%), Gaps = 3/162 (1%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+K+V++G VGKS L + +N F TI ++ Q + IDG+ I DTAGQE
Sbjct: 4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLES 135
+ A+ Y R G L V+ I +F+ I ++ +++K D+ V +LVGNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 136 IRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V + + + LA + G+ ++ETSA V+ AF ++REI
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+K+V++G VGKS L + +N F TI ++ Q + IDG+ I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 63
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLES 135
+ A+ Y R G L V+ I +F+ I + +++K D+ V +LVGNK DL S
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 136 IRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V T++ + LA + G+ F+ETSA V AF ++REI
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 92/163 (56%), Gaps = 3/163 (1%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+K+V++G VGKS L ++ + F TI ++ Q +E+D ++ +I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDAQQCMLEILDTAGTE 62
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLES 135
+F A+ Y + G +VY IT ++TF+ + +++ DT V +LVGNKCDLE
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 122
Query: 136 IRNVSTEEGKSLA-EAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V E+G++LA + F+E+SA NV F ++R+I
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 92/163 (56%), Gaps = 3/163 (1%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+K+V++G VGKS L ++ + F TI ++ Q +E+D ++ +I DTAG E
Sbjct: 6 YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDAQQCMLEILDTAGTE 64
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLES 135
+F A+ Y + G +VY IT ++TF+ + +++ DT V +LVGNKCDLE
Sbjct: 65 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 124
Query: 136 IRNVSTEEGKSLA-EAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V E+G++LA + F+E+SA NV F ++R+I
Sbjct: 125 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 93/165 (56%), Gaps = 5/165 (3%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75
L K++++G VGKS L ++ +EF + T ++ + + +DG+EV+ I DTAG
Sbjct: 7 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 65
Query: 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDEL---KTHSDTTVARMLVGNKCD 132
E + A+ Y+R G L+V+ IT +F + + + +++ K D + ++VGNK D
Sbjct: 66 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK-IPLLVVGNKSD 124
Query: 133 LESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
LE R V EE +S AE G+ ++ETSA NV F ++REI
Sbjct: 125 LEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 93/165 (56%), Gaps = 5/165 (3%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75
L K++++G VGKS L ++ +EF + T ++ + + +DG+EV+ I DTAG
Sbjct: 3 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 61
Query: 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDEL---KTHSDTTVARMLVGNKCD 132
E + A+ Y+R G L+V+ IT +F + + + +++ K D + ++VGNK D
Sbjct: 62 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK-IPLLVVGNKSD 120
Query: 133 LESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
LE R V EE +S AE G+ ++ETSA NV F ++REI
Sbjct: 121 LEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 92/163 (56%), Gaps = 3/163 (1%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+K+V++G VGKS L ++ + F TI ++ Q +E+D ++ +I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDCQQCMLEILDTAGTE 62
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTT-VARMLVGNKCDLES 135
+F A+ Y + G +VY IT ++TF+ + +++ DT V +LVGNKCDLE
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 136 IRNVSTEEGKSLA-EAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V E+G++LA + F+E+SA NV F ++R+I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 92/163 (56%), Gaps = 3/163 (1%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+K+V++G VGKS L ++ + F TI ++ Q +E+D ++ +I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQ-VEVDCQQCMLEILDTAGTE 62
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTT-VARMLVGNKCDLES 135
+F A+ Y + G +VY IT ++TF+ + +++ DT V +LVGNKCDLE
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 136 IRNVSTEEGKSLA-EAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V E+G++LA + F+E+SA NV F ++R+I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 83/165 (50%), Gaps = 4/165 (2%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGK-EVKAQIWDTAGQ 75
KIV++GD A GK++L + +A+ F K TIG++F + + + G V QIWD GQ
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKT---HSDTTVARMLVGNKCD 132
+ Y GA G L+VYDIT +F+++ W +K S+T LVGNK D
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 133 LESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
LE +R + E+ + G SA +V F+ V EI
Sbjct: 127 LEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 3/164 (1%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
FK+V++GD GK+ + R+ EF ATIGVE S + E+K +WDTAG E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
+F + YY A A+I++D+T R T+ ++ W +L + + +L GNK D++
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKE- 123
Query: 137 RNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSN 180
R V + + + L + + SA + N + F + R++ N
Sbjct: 124 RKVKAKT-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGN 166
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 3/164 (1%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
FK+V++GD GK+ + R+ EF ATIGVE S + E+K +WDTAG E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
+F + YY A A+I++D+T R T+ ++ W +L + + +L GNK D++
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKE- 122
Query: 137 RNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSN 180
R V + + + L + + SA + N + F + R++ N
Sbjct: 123 RKVKAKT-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGN 165
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 89/174 (51%), Gaps = 3/174 (1%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
FK+V++GD GK+ + R+ EF ATIGVE S + E+K +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
+F + YY A A+I++D+T R T+ ++ W +L + + +L GNK D++
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKE- 130
Query: 137 RNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSNVSRKVLNSDS 190
R V + + + L + + SA + N + F + R++ N + + S +
Sbjct: 131 RKVKAKT-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPA 183
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 87.0 bits (214), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 96/174 (55%), Gaps = 3/174 (1%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+K+V++G VGKS L + +N F TI ++ Q + IDG+ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLES 135
+ A+ Y R G L V+ I +F+ I ++ +++K D+ V +LVGNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 136 IRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSNVSRKVLNSD 189
R V + + + LA + G+ ++ETSA V+ AF ++REI + RK+ D
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPD 175
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 86/161 (53%), Gaps = 2/161 (1%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K+VI+G VGK++L ++ EF+ T+ + ++ + + E + DTAGQ+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDEL-KTHSDTTVARMLVGNKCDLESI 136
+ + ++ G G ++VY +T +F I +L + H T V +LVGNK DL
Sbjct: 85 YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 137 RNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V EGK LAE+ G FME+SA ++ + F VI+EI
Sbjct: 145 REVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 7/163 (4%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
FK+V++GD GK+ + R+ EF AT+GVE + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
+F + YY A A+I++D+T R T+ ++ W +L + +L GNK D++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD- 128
Query: 137 RNVSTEEGKSLA--EAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V + KS+ + L + + SA + N + F + R++
Sbjct: 129 RKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 80/155 (51%), Gaps = 1/155 (0%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIG-VEFQTQSMEIDGKEVKAQIWDTAGQ 75
+KI +IGD VGK+ ++R F + AT+G V ++ G +K +WDTAGQ
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLES 135
E+ + YY GA GA++ +D+T R T +++RW+ E + ++ NK D+++
Sbjct: 72 EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 136 IRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAF 170
+ +S + + + + + E SA + N F
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF 166
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 85/163 (52%), Gaps = 7/163 (4%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
FK+V++GD GK+ + R+ EF AT+GVE + +K +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
+F + YY A A+I++D+T R T+ ++ W +L + + +L GNK D++
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKD- 121
Query: 137 RNVSTEEGKSLA--EAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V + KS+ + L + + SA + N + F + R++
Sbjct: 122 RKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 85/163 (52%), Gaps = 7/163 (4%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
FK+V++GD GK+ + R+ EF AT+GVE + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
+F + YY A A+I++D+T R T+ ++ W +L + + +L GNK D++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKD- 128
Query: 137 RNVSTEEGKSLA--EAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V + KS+ + L + + SA + N + F + R++
Sbjct: 129 RKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 85/163 (52%), Gaps = 7/163 (4%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
FK+V++GD GK+ + R+ EF AT+GVE + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
+F + YY A A+I++D+T R T+ ++ W +L + + +L GNK D++
Sbjct: 71 KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKD- 128
Query: 137 RNVSTEEGKSLA--EAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V + KS+ + L + + SA + N + F + R++
Sbjct: 129 RKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 85/163 (52%), Gaps = 7/163 (4%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
FK+V++GD GK+ + R+ EF AT+GVE + +K +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
+F + YY A A+I++D+T R T+ ++ W +L + + +L GNK D++
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKD- 133
Query: 137 RNVSTEEGKSLA--EAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V + KS+ + L + + SA + N + F + R++
Sbjct: 134 RKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 85/163 (52%), Gaps = 7/163 (4%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
FK+V++GD GK+ + R+ EF AT+GVE + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
+F + YY A A+I++D+T R T+ ++ W +L + + +L GNK D++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKD- 128
Query: 137 RNVSTEEGKSLA--EAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V + KS+ + L + + SA + N + F + R++
Sbjct: 129 RKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 95/170 (55%), Gaps = 3/170 (1%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+K+V++G VGKS L + +N F TI ++ Q + IDG+ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLES 135
+ A+ Y R G L V+ I +F+ I ++ +++K D+ V +LVGNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 136 IRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSNVSRKV 185
R V + + + LA + G+ ++ETSA V+ AF ++REI + RK+
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKL 171
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 95/170 (55%), Gaps = 3/170 (1%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+K+V++G VGKS L + +N F TI ++ Q + IDG+ I DTAGQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLES 135
+ A+ Y R G L V+ I +F+ I ++ +++K D+ V +LVGNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 136 IRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSNVSRKV 185
R V + + + LA + G+ ++ETSA V+ AF ++REI + RK+
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKL 171
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 29 KSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88
KS L + +N F TI ++ Q + IDG+ I DTAG E + A+ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 89 AVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLESIRNVSTEEGKSL 147
G L V+ I +F+ I + +++K D+ V +LVGNKCDL S R V T++ + L
Sbjct: 93 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDL 151
Query: 148 AEAEGLFFMETSALDSTNVKSAFEIVIREI 177
A + G+ F+ETSA V AF ++REI
Sbjct: 152 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 181
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 83/163 (50%), Gaps = 7/163 (4%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
FK+V++GD GK+ + R+ EF T+GVE + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
+F + YY A A+I++D+T R T+ ++ W +L + +L GNK D++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD- 128
Query: 137 RNVSTEEGKSLA--EAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V + KS+ + L + + SA + N + F + R++
Sbjct: 129 RKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 7/163 (4%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
FK+V++GD GK+ + R+ EF AT+GVE + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
+F + YY A A+I +D+T R T+ ++ W +L + + +L GNK D++
Sbjct: 71 KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKD- 128
Query: 137 RNVSTEEGKSLA--EAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V + KS+ + L + + SA + N + F + R++
Sbjct: 129 RKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 29 KSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88
KS L + +N F TI ++ Q + IDG+ I DTAGQE + A+ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 89 AVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLESIRNVSTEEGKSL 147
G L V+ I +F I+ + +++K D+ V +LVGNKCDL + R V T++ L
Sbjct: 93 GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHEL 151
Query: 148 AEAEGLFFMETSALDSTNVKSAFEIVIREI 177
A++ G+ F+ETSA V+ AF ++REI
Sbjct: 152 AKSYGIPFIETSAKTRQGVEDAFYTLVREI 181
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 85/163 (52%), Gaps = 7/163 (4%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
FK+V++GD GK+ + R+ EF AT+GVE + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
++ + YY A A+I++D+T R T+ ++ W +L + + +L GNK D++
Sbjct: 71 KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKD- 128
Query: 137 RNVSTEEGKSLA--EAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V + KS+ + L + + SA + N + F + R++
Sbjct: 129 RKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 84/163 (51%), Gaps = 7/163 (4%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
FK+V++GD GK+ + R+ EF T+GVE + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
+F + YY A A+I++D+T R T+ ++ W +L + + +L GNK D++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKD- 128
Query: 137 RNVSTEEGKSLA--EAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V + KS+ + L + + SA + N + F + R++
Sbjct: 129 RKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K+VI+GD A GK+ LL +++++F P E +E+DGK+V+ +WDTAGQE
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 69
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL--- 133
+ + Y L+ + I + ++I +W E+K H V +LVGNK DL
Sbjct: 70 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 128
Query: 134 ESIR---------NVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIR 175
E R V EEG+ +A G F +ME SA V+ FE+ R
Sbjct: 129 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 180
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K+VI+GD A GK+ LL +++++F P E +E+DGK+V+ +WDTAGQE
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 68
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL--- 133
+ + Y L+ + I + ++I +W E+K H V +LVGNK DL
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 127
Query: 134 ESIR---------NVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIR 175
E R V EEG+ +A G F +ME SA V+ FE+ R
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 179
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K+VI+GD A GK+ LL +++++F P E +E+DGK+V+ +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 67
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL--- 133
+ + Y L+ + I + ++I +W E+K H V +LVGNK DL
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 134 ESIR---------NVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIR 175
E R V EEG+ +A G F +ME SA V+ FE+ R
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K+VI+GD A GK+ LL +++++F P E +E+DGK+V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 65
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL--- 133
+ + Y L+ + I + ++I +W E+K H V +LVGNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 134 ESIR---------NVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIR 175
E R V EEG+ +A G F +ME SA V+ FE+ R
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K+VI+GD A GK+ LL +++++F P E +E+DGK+V+ +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 66
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL--- 133
+ + Y L+ + I + ++I +W E+K H V +LVGNK DL
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 125
Query: 134 ESIR---------NVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIR 175
E R V EEG+ +A G F +ME SA V+ FE+ R
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 177
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K+VI+GD A GK+ LL +++++F P E +E+DGK+V+ +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 67
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL--- 133
+ + Y L+ + I + ++I +W E+K H V +LVGNK DL
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 134 ESIR---------NVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIR 175
E R V EEG+ +A G F +ME SA V+ FE+ R
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K+VI+GD A GK+ LL +++++F P E +E+DGK+V+ +WDTAGQE
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 66
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL--- 133
+ + Y L+ + I + ++I +W E+K H V +LVGNK DL
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 125
Query: 134 ESIR---------NVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIR 175
E R V EEG+ +A G F +ME SA V+ FE+ R
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 177
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K+VI+GD A GK+ LL +++++F P E +E+DGK+V+ +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 67
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL--- 133
+ + Y L+ + I + ++I +W E+K H V +LVGNK DL
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 134 ESIR---------NVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIR 175
E R V EEG+ +A G F +ME SA V+ FE+ R
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 91/162 (56%), Gaps = 3/162 (1%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+K+V++G VGKS L + +N F TI ++ Q + IDG+ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESYRKQVV-IDGETCLLDILDTAGQE 62
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLES 135
+ A+ Y R G L V+ I +F+ I ++ +++K D+ V +LVGNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 136 IRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V + + + LA + G+ ++ETSA V+ AF ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 29 KSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88
KS L + +N F TI ++ Q + IDG+ I DTAGQE + A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 89 AVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLESIRNVSTEEGKSL 147
G L V+ I +F+ I ++ +++K D+ V +LVGNKCDL + R V + + + L
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 138
Query: 148 AEAEGLFFMETSALDSTNVKSAFEIVIREI 177
A + G+ ++ETSA V+ AF ++REI
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 29 KSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88
KS L + +N F TI ++ Q + IDG+ I DTAGQE + A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 89 AVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLESIRNVSTEEGKSL 147
G L V+ I +F+ I ++ +++K D+ V +LVGNKCDL + R V + + + L
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 138
Query: 148 AEAEGLFFMETSALDSTNVKSAFEIVIREI 177
A + G+ ++ETSA V+ AF ++REI
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 83/163 (50%), Gaps = 7/163 (4%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
FK+V++GD GK+ + R+ EF AT+GVE + +K +WDTAG E
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
+F + YY A A+I++D+T R T+ ++ W +L + +L GNK D++
Sbjct: 67 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD- 124
Query: 137 RNVSTEEGKSLA--EAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V + KS+ + L + + SA + N + F + R++
Sbjct: 125 RKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 164
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 29 KSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88
KS L + +N F TI ++ Q + IDG+ I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 89 AVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLESIRNVSTEEGKSL 147
G L V+ I +F+ I ++ +++K D+ V +LVGNKCDL + R V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 148 AEAEGLFFMETSALDSTNVKSAFEIVIREI 177
A + G+ ++ETSA V+ AF ++REI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 29 KSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88
KS L + +N F TI ++ Q + IDG+ I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 89 AVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLESIRNVSTEEGKSL 147
G L V+ I +F+ I ++ +++K D+ V +LVGNKCDL + R V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 148 AEAEGLFFMETSALDSTNVKSAFEIVIREI 177
A + G+ ++ETSA V+ AF ++REI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 29 KSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88
KS L + +N F TI ++ Q + IDG+ I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 89 AVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLESIRNVSTEEGKSL 147
G L V+ I +F+ I ++ +++K D+ V +LVGNKCDL + R V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 148 AEAEGLFFMETSALDSTNVKSAFEIVIREI 177
A + G+ ++ETSA V+ AF ++REI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 29 KSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88
KS L + +N F TI ++ Q + IDG+ I DTAGQE + A+ Y R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 89 AVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLESIRNVSTEEGKSL 147
G L V+ I +F+ I ++ +++K D+ V +LVGNKCDL + R V + + + L
Sbjct: 82 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 140
Query: 148 AEAEGLFFMETSALDSTNVKSAFEIVIREI 177
A + G+ ++ETSA V+ AF ++REI
Sbjct: 141 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 170
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 83/163 (50%), Gaps = 7/163 (4%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
FK+V++GD GK+ + R+ EF AT+GVE + +K +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
+F + YY A A+I++D+T R T+ ++ W +L + +L GNK D++
Sbjct: 73 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD- 130
Query: 137 RNVSTEEGKSLA--EAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V + KS+ + L + + SA + N + F + R++
Sbjct: 131 RKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 29 KSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88
KS L + +N F TI ++ Q + IDG+ I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 89 AVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLESIRNVSTEEGKSL 147
G L V+ I +F+ I ++ +++K D+ V +LVGNKCDL + R V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 148 AEAEGLFFMETSALDSTNVKSAFEIVIREI 177
A + G+ ++ETSA V+ AF ++REI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 91/162 (56%), Gaps = 3/162 (1%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+K+V++G VGKS L + +N F TI ++ Q + IDG+ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLES 135
+ A+ Y R G L V+ I +F+ I ++ +++K D+ V +LVGNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 136 IRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V + + + LA + G+ ++ETSA V+ AF ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 83/148 (56%), Gaps = 7/148 (4%)
Query: 31 NLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAV 90
L+ + +EF+P TI ++ Q + IDG+ I DTAGQE + A+ Y R
Sbjct: 22 QLIQNHFVDEFDP----TIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGE 76
Query: 91 GALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLESIRNVSTEEGKSLAE 149
G L V+ I +F+ I ++ +++K D+ V +LVGNKCDL + R V + + + LA
Sbjct: 77 GFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLAR 135
Query: 150 AEGLFFMETSALDSTNVKSAFEIVIREI 177
+ G+ ++ETSA V+ AF ++REI
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 29 KSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88
KS L + +N F TI ++ Q + IDG+ I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 89 AVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLESIRNVSTEEGKSL 147
G L V+ I +F+ I ++ +++K D+ V +LVGNKCDL + R V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 148 AEAEGLFFMETSALDSTNVKSAFEIVIREI 177
A + G+ ++ETSA V+ AF ++REI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 84/163 (51%), Gaps = 7/163 (4%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
FK+V++GD GK+ + R+ EF AT+GVE + +K +WDTAG E
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
+F + YY A A+I++D+T R T+ ++ W +L + + +L GNK D++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKD- 128
Query: 137 RNVSTEEGKSLA--EAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V + KS+ + L + + SA + N + F + R++
Sbjct: 129 RKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 89/172 (51%), Gaps = 14/172 (8%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75
K V +GD AVGK+ +L Y N F T+ F + ++ +DG V +WDTAGQ
Sbjct: 6 FIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64
Query: 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDLE 134
E + + YRGA L+ + + + ++++I +WL ELK H + +LVG K DL
Sbjct: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELK-HYAPGIPIVLVGTKLDLR 123
Query: 135 SIR----------NVSTEEGKSLAEAEG-LFFMETSALDSTNVKSAFEIVIR 175
+ +++T +G+ L + G + ++E S+ NVK+ F+ IR
Sbjct: 124 DDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIR 175
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 29 KSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88
KS L + +N F TI ++ Q + IDG+ I DTAGQE + A+ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 89 AVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLESIRNVSTEEGKSL 147
G L V+ I +F+ I + +++K D+ V +LVGNK DL S R V T++ + L
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS-RTVDTKQAQDL 134
Query: 148 AEAEGLFFMETSALDSTNVKSAFEIVIREI 177
A + G+ F+ETSA V AF ++REI
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 29 KSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88
KS L + +N F TI ++ Q + IDG+ I DTAGQE + A+ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 89 AVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLESIRNVSTEEGKSL 147
G L V+ I +F+ I + +++K D+ V +LVGNK DL S R V T++ + L
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS-RTVDTKQAQDL 134
Query: 148 AEAEGLFFMETSALDSTNVKSAFEIVIREI 177
A + G+ F+ETSA V AF ++REI
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K+VI+GD A GK+ LL ++++F P E +E+DGK+V+ +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 63
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL--- 133
+ + Y L+ + I + ++I +W E+K H V +LVGNK DL
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 134 ESIR---------NVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIR 175
E R V EEG+ +A G F +ME SA V+ FE+ R
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 174
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 29 KSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88
KS L + +N F TI ++ Q + IDG+ I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 89 AVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLESIRNVSTEEGKSL 147
G L V+ I +F+ I ++ +++K D+ V +LVGN+CDL + R V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDL-AARTVESRQAQDL 133
Query: 148 AEAEGLFFMETSALDSTNVKSAFEIVIREI 177
A + G+ ++ETSA V+ AF ++REI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 29 KSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88
KS L + +N F +I ++ Q + IDG+ I DTAGQE + A+ Y R
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 89 AVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLESIRNVSTEEGKSL 147
G L V+ I +F+ I ++ +++K D+ V +LVGNKCDL + R V + + + L
Sbjct: 81 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 139
Query: 148 AEAEGLFFMETSALDSTNVKSAFEIVIREI 177
A + G+ ++ETSA V+ AF ++REI
Sbjct: 140 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 169
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 29 KSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88
K+ L + +N F TI ++ Q + IDG+ I DTAGQE + A+ Y R
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 89 AVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLESIRNVSTEEGKSL 147
G L V+ I +F+ I ++ +++K D+ V +LVGNKCDL + R V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 148 AEAEGLFFMETSALDSTNVKSAFEIVIREI 177
A + G+ ++ETSA V+ AF ++REI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K+VI+GD A GK+ LL ++++F P E +E+DGK+V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 65
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL--- 133
+ + Y L+ + I + ++I +W E+K H V +LVGNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 134 ESIR---------NVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIR 175
E R V EEG+ +A G F +ME SA V+ FE+ R
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K+VI+GD A GK+ LL ++++F P E +E+DGK+V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 65
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL--- 133
+ + Y L+ + I + ++I +W E+K H V +LVGNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 134 ESIR---------NVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIR 175
E R V EEG+ +A G F +ME SA V+ FE+ R
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K+VI+GD A GK+ LL ++++F P E +E+DGK+V+ +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 63
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL--- 133
+ + Y L+ + I + ++I +W E+K H V +LVGNK DL
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 134 ESIR---------NVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIR 175
E R V EEG+ +A G F +ME SA V+ FE+ R
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 174
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K+VI+GD A GK+ LL ++++F P E +E+DGK+V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 65
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL--- 133
+ + Y L+ + I + ++I +W E+K H V +LVGNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 134 ESIR---------NVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIR 175
E R V EEG+ +A G F +ME SA V+ FE+ R
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 29 KSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88
KS L + +N F +I ++ Q + IDG+ I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 89 AVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLESIRNVSTEEGKSL 147
G L V+ I +F+ I ++ +++K D+ V +LVGNKCDL + R V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 148 AEAEGLFFMETSALDSTNVKSAFEIVIREI 177
A + G+ ++ETSA V+ AF ++REI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 89/168 (52%), Gaps = 6/168 (3%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
KIV++GD AVGK+ LL +++ E P + E + M+ +E +WDTAGQE
Sbjct: 24 LKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQE 82
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL-- 133
+ + Y + L+ + + RT+FD+IS +W E+K + DT +LVG K DL
Sbjct: 83 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTA-KTVLVGLKVDLRK 141
Query: 134 ESIRNVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIREIYSN 180
+ +V+ +EG L + G ++E S++ + FE + I+SN
Sbjct: 142 DGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 189
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 29 KSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88
KS L + +N F TI ++ Q + IDG+ I DT GQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 89 AVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLESIRNVSTEEGKSL 147
G L V+ I +F+ I ++ +++K D+ V +LVGNKCDL + R V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 148 AEAEGLFFMETSALDSTNVKSAFEIVIREI 177
A + G+ ++ETSA V+ AF ++REI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 89/168 (52%), Gaps = 6/168 (3%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
KIV++GD AVGK+ LL +++ E P + E + M+ +E +WDTAGQE
Sbjct: 23 LKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQE 81
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL-- 133
+ + Y + L+ + + RT+FD+IS +W E+K + DT +LVG K DL
Sbjct: 82 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTA-KTVLVGLKVDLRK 140
Query: 134 ESIRNVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIREIYSN 180
+ +V+ +EG L + G ++E S++ + FE + I+SN
Sbjct: 141 DGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 188
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 84/163 (51%), Gaps = 7/163 (4%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
FK+V++GD GK+ + R+ E AT+GVE + +K +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136
+F + YY A A+I++D+T R T+ ++ W +L + + +L GNK D++
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKD- 133
Query: 137 RNVSTEEGKSLA--EAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V + KS+ + L + + SA + N + F + R++
Sbjct: 134 RKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 29 KSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88
KS L + +N F TI ++ Q + IDG+ I DT GQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 89 AVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLESIRNVSTEEGKSL 147
G L V+ I +F+ I ++ +++K D+ V +LVGNKCDL + R V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 148 AEAEGLFFMETSALDSTNVKSAFEIVIREI 177
A + G+ ++ETSA V+ AF ++REI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 29 KSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88
KS L + +N F TI ++ Q + IDG+ I DTAG+E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 89 AVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLESIRNVSTEEGKSL 147
G L V+ I +F+ I ++ +++K D+ V +LVGNKCDL + R V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 148 AEAEGLFFMETSALDSTNVKSAFEIVIREI 177
A + G+ ++ETSA V+ AF ++REI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 29 KSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88
KS L + +N F TI ++ Q + IDG+ I DTAG E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 89 AVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLESIRNVSTEEGKSL 147
G L V+ I +F+ I ++ +++K D+ V +LVGNKCDL + R V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 148 AEAEGLFFMETSALDSTNVKSAFEIVIREI 177
A + G+ ++ETSA V+ AF ++REI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 90/161 (55%), Gaps = 3/161 (1%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+K+V++G VGKS L + +N F TI ++ Q + IDG+ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLES 135
+ A+ Y R G L V+ I +F+ I ++ +++K D+ V +LVGNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 136 IRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIRE 176
R V + + + LA + G+ ++ETSA V+ AF ++RE
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 85/176 (48%), Gaps = 18/176 (10%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75
K V +GD AVGK+ LL Y N F T+ F + ++ ++G V +WDTAGQ
Sbjct: 8 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQ 66
Query: 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDLE 134
E + + YRGA ++ + + + +++++S +W+ ELK H V +LVG K DL
Sbjct: 67 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIVLVGTKLDLR 125
Query: 135 -------------SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
I V EE K L A ++E S+ NVK F+ IR +
Sbjct: 126 DDKQFFIDHPGAVPITTVQGEELKKLIGAPA--YIECSSKSQENVKGVFDAAIRVV 179
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 88/182 (48%), Gaps = 16/182 (8%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K V++GD AVGK+ LL Y N F T+ + M +DGK V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDL-- 133
+ + Y +LI + + +F+++ ++W E++ H T +LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 134 ----------ESIRNVSTEEGKSLAEAEG-LFFMETSALDSTNVKSAFEIVIREIYSNVS 182
+ + ++ +G ++A+ G + ++E SAL +K+ F+ IR +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181
Query: 183 RK 184
K
Sbjct: 182 VK 183
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 29 KSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88
KS L + +N F TI ++ Q + IDG+ I DTAGQE A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 89 AVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLESIRNVSTEEGKSL 147
G L V+ I +F+ I ++ +++K D+ V +LVGNKCDL + R V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 148 AEAEGLFFMETSALDSTNVKSAFEIVIREI 177
A + G+ ++ETSA V+ AF ++REI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 16/182 (8%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K V++GD AVGK+ LL Y N F T+ + M +DGK V +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 64
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDL-- 133
+ + Y +LI + + +F+++ ++W E++ H T +LVG K DL
Sbjct: 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 123
Query: 134 ----------ESIRNVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIREIYSNVS 182
+ + ++ +G ++A+ G ++E SAL +K+ F+ IR +
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 183
Query: 183 RK 184
K
Sbjct: 184 VK 185
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 16/182 (8%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K V++GD AVGK+ LL Y N F T+ + M +DGK V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDL-- 133
+ + Y +LI + + +F+++ ++W E++ H T +LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 134 ----------ESIRNVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIREIYSNVS 182
+ + ++ +G ++A+ G ++E SAL +K+ F+ IR +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181
Query: 183 RK 184
K
Sbjct: 182 VK 183
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 16/182 (8%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K V++GD AVGK+ LL Y N F T+ + M +DGK V +WDTAGQE
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 66
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDL-- 133
+ + Y +LI + + +F+++ ++W E++ H T +LVG K DL
Sbjct: 67 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 125
Query: 134 ----------ESIRNVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIREIYSNVS 182
+ + ++ +G ++A+ G ++E SAL +K+ F+ IR +
Sbjct: 126 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 185
Query: 183 RK 184
K
Sbjct: 186 VK 187
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 86/163 (52%), Gaps = 8/163 (4%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
KI I+G +VGKS+L ++ +F + TI F T+ + ++G+E Q+ DTAGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSI----SRWLDELKTHSDTTVARMLVGNKCDL 133
+ Y G ++VY +T +F+ I + LD + + MLVGNK DL
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV---GKVQIPIMLVGNKKDL 121
Query: 134 ESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIRE 176
R +S EEGK+LAE+ F+E+SA ++ F +I E
Sbjct: 122 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 85/164 (51%), Gaps = 8/164 (4%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K+ I G + VGKS L+ R+ F T+ ++ Q+ ID + V +I DTAGQE
Sbjct: 30 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAGQED 88
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSI---SRWLDELKTHSDTTVARMLVGNKCDLE 134
+ R G ++VYDIT R +F+ + LDE+K + T+ +LVGNK DL+
Sbjct: 89 -TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTL--ILVGNKADLD 145
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDST-NVKSAFEIVIREI 177
R VSTEEG+ LA F E SA N+ F + RE+
Sbjct: 146 HSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K+V++GD GK++LL +A F P S E ++++ GK V IWDTAGQ+
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAF-PESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD 94
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDL--- 133
+ + +Y A L+ +D+T +FD+I +RW E+ H V ++VG K DL
Sbjct: 95 YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHFCKKVPIIVVGCKTDLRKD 153
Query: 134 ---------ESIRNVSTEEGKSLAEAEG-LFFMETSALDSTNVKSAFE 171
+ V+ G+ +A + G + ++E SA NV + F+
Sbjct: 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQ 201
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 29 KSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88
KS L + +N F TI ++ Q + IDG+ I DTAG E + A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 89 AVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLESIRNVSTEEGKSL 147
G L V+ I +F+ I ++ +++K D+ V +LVGNKCDL + R V + + + L
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 138
Query: 148 AEAEGLFFMETSALDSTNVKSAFEIVIREI 177
A + G+ ++ETSA V+ AF ++REI
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K+VI+GD A GK+ LL +++++F P E +E+DGK+V+ +WDTAGQE
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQF-PAVYVPTVFENYVADIEVDGKQVELALWDTAGQED 65
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDLESI 136
+ Y L+ + I + ++I +W E+K H V +LVGNK DL +
Sbjct: 66 YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 137 RNVSTE------------EGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIR 175
+ + E EG+ +A G F +ME SA V+ FE+ R
Sbjct: 125 EHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 29 KSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88
KS L + +N F TI ++ Q + IDG+ I DTAG E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 89 AVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLESIRNVSTEEGKSL 147
G L V+ I +F+ I ++ +++K D+ V +LVGNKCDL + R V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 148 AEAEGLFFMETSALDSTNVKSAFEIVIREI 177
A + G+ ++ETSA V+ AF ++REI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+K+V++G VGKS L + +N F TI ++ Q + IDG+ I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGLE 62
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLES 135
+ A+ Y R G L V+ I +F+ I ++ +++K D+ V +LVGNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 136 IRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V + + + LA + G+ ++ETSA V+ AF ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 16/177 (9%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K V++GD AVGK+ LL Y N F T+ + M +DGK V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDL-- 133
+ + Y LI + + +F+++ ++W E++ H T +LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 134 ----------ESIRNVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIREIYS 179
+ + ++ +G ++A+ G ++E SAL +K+ F+ IR + S
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLS 178
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 29 KSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88
KS L + +N F TI ++ Q + IDG+ I DTAG E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 89 AVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLESIRNVSTEEGKSL 147
G L V+ I +F+ I ++ +++K D+ V +LVGNKCDL + R V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 148 AEAEGLFFMETSALDSTNVKSAFEIVIREI 177
A + G+ ++ETSA V+ AF ++REI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 85/163 (52%), Gaps = 8/163 (4%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
KI I+G +VGKS+L ++ +F TI F T+ + ++G+E Q+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSI----SRWLDELKTHSDTTVARMLVGNKCDL 133
+ Y G ++VY +T +F+ I + LD + + MLVGNK DL
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV---GKVQIPIMLVGNKKDL 123
Query: 134 ESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIRE 176
R +S EEGK+LAE+ F+E+SA ++ F +I E
Sbjct: 124 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 29 KSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88
KS L + +N F TI ++ Q + IDG+ I DTAG E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 89 AVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLESIRNVSTEEGKSL 147
G L V+ I +F+ I ++ +++K D+ V +LVGNKCDL + R V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 148 AEAEGLFFMETSALDSTNVKSAFEIVIREI 177
A + G+ ++ETSA V+ AF ++REI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 29 KSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88
KS L + +N F TI ++ Q + IDG+ I DTAG E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 89 AVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLESIRNVSTEEGKSL 147
G L V+ I +F+ I ++ +++K D+ V +LVGNKCDL + R V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 148 AEAEGLFFMETSALDSTNVKSAFEIVIREI 177
A + G+ ++ETSA V+ AF ++REI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 85/163 (52%), Gaps = 8/163 (4%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
KI I+G +VGKS+L ++ +F TI F T+ + ++G+E Q+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSI----SRWLDELKTHSDTTVARMLVGNKCDL 133
+ Y G ++VY +T +F+ I + LD + + MLVGNK DL
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV---GKVQIPIMLVGNKKDL 123
Query: 134 ESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIRE 176
R +S EEGK+LAE+ F+E+SA ++ F +I E
Sbjct: 124 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 89/174 (51%), Gaps = 14/174 (8%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75
K V +GD AVGK+ +L Y N F T+ F + ++ +DG V +WDTAGQ
Sbjct: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGNTVNLGLWDTAGQ 64
Query: 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDLE 134
E + + YRGA ++ + + + ++++++ +W+ EL+ H V +LVG K DL
Sbjct: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLR 123
Query: 135 SIRN----------VSTEEGKSLAEAEG-LFFMETSALDSTNVKSAFEIVIREI 177
+ ++T +G+ L + G ++E S+ NVK+ F+ I+ +
Sbjct: 124 DDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVV 177
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K+VI+GD A GK+ LL +++++F P E +E+DGK+V+ +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYIADIEVDGKQVELALWDTAGQED 85
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL--- 133
+ + Y L+ + I + ++I +W E+K H V +LVGNK DL
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFXPNVPIILVGNKKDLRQD 144
Query: 134 ESIR---------NVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIR 175
E R V +EEG+ +A F ++E SA V+ FE+ R
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 196
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 16/182 (8%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K V++GD AVGK+ LL Y N F T+ + M +DGK V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDL-- 133
+ + Y LI + + +F+++ ++W E++ H T +LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 134 ----------ESIRNVSTEEGKSLAEAEG-LFFMETSALDSTNVKSAFEIVIREIYSNVS 182
+ + ++ +G ++A+ G + ++E SAL +K+ F+ IR +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181
Query: 183 RK 184
K
Sbjct: 182 VK 183
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 16/182 (8%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K V++GD AVGK+ LL Y N F T+ + M +DGK V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDL-- 133
+ + Y LI + + +F+++ ++W E++ H T +LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 134 ----------ESIRNVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIREIYSNVS 182
+ + ++ +G ++A+ G ++E SAL +K+ F+ IR +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181
Query: 183 RK 184
K
Sbjct: 182 VK 183
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K V++GD AVGK+ LL Y N F T+ + M +DGK V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDL-- 133
+ + Y LI + + +F+++ ++W E++ H T +LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHT-PILLVGTKLDLRD 121
Query: 134 -----ESIRN-----VSTEEGKSLAEAEG-LFFMETSALDSTNVKSAFEIVIREI 177
E +R+ ++ +G ++A G + ++E SAL +K+ F+ IR +
Sbjct: 122 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 87/160 (54%), Gaps = 6/160 (3%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYA-RNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
L+++V++GD VGK++L S +A + E + H + +G + +++ +DG++ + DT
Sbjct: 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQ--LGEDVYERTLTVDGEDTTLVVVDTWE 61
Query: 75 QERFRAVTS--AYYRGAVGALIVYDITRRTTFDSISRWLDELK-THSDTTVARMLVGNKC 131
E+ S + +G +IVY I R +F+S S +L+ TH V +LVGNK
Sbjct: 62 AEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKA 121
Query: 132 DLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFE 171
DL R VS EEG++ A F+ETSA NV FE
Sbjct: 122 DLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 29 KSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88
KS L + +N F TI ++ Q + IDG+ I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 89 AVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLESIRNVSTEEGKSL 147
G L V+ I +F+ I ++ +++K D+ V +LVGNK DL + R V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL-AARTVESRQAQDL 133
Query: 148 AEAEGLFFMETSALDSTNVKSAFEIVIREI 177
A + G+ ++ETSA V+ AF ++REI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K V++GD AVGK+ LL Y N F T+ + M +DGK V +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 63
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDL-- 133
+ + Y LI + + +F+++ ++W E++ H T +LVG K DL
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHT-PILLVGTKLDLRD 122
Query: 134 -----ESIRN-----VSTEEGKSLAEAEG-LFFMETSALDSTNVKSAFEIVIREI 177
E +R+ ++ +G ++A G + ++E SAL +K+ F+ IR +
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 177
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K V++GD AVGK+ LL Y N F T+ + M +DGK V +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 63
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDL-- 133
+ + Y LI + + +F+++ ++W E++ H T +LVG K DL
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHT-PILLVGTKLDLRD 122
Query: 134 -----ESIRN-----VSTEEGKSLAEAEG-LFFMETSALDSTNVKSAFEIVIREI 177
E +R+ ++ +G ++A G + ++E SAL +K+ F+ IR +
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 177
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 86/174 (49%), Gaps = 16/174 (9%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K V++GD AVGK+ LL Y N F+ T+ + M +DGK V +WDTAGQE
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 73
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDL--- 133
+ + Y LI + + +F+++ ++W E++ H T +LVG K DL
Sbjct: 74 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRDD 132
Query: 134 ---------ESIRNVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIREI 177
+ + ++ +G ++A+ G ++E SAL +K+ F+ IR +
Sbjct: 133 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 186
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 85/163 (52%), Gaps = 8/163 (4%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
KI I+G +VGKS+L ++ +F TI F T+ + ++G+E Q+ DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSI----SRWLDELKTHSDTTVARMLVGNKCDL 133
+ Y G ++VY +T +F+ I + LD + + MLVGNK DL
Sbjct: 62 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV---GKVQIPIMLVGNKKDL 118
Query: 134 ESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIRE 176
R +S EEGK+LAE+ F+E+SA ++ F +I E
Sbjct: 119 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 161
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 78/150 (52%), Gaps = 2/150 (1%)
Query: 29 KSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88
KS L ++ ++ F TI + Q + ID + + I DTAGQE F A+ Y R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 89 AVGALIVYDITRRTTFDSISRWLDE-LKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSL 147
G L+V+ +T R +F+ I ++ + L+ +L+GNK DL+ R V+ EEG+ L
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 148 AEAEGLFFMETSALDSTNVKSAFEIVIREI 177
A + +ME SA NV AF ++R I
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHELVRVI 166
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 85/175 (48%), Gaps = 16/175 (9%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K V++GD AVGK+ LL Y N F T+ + M +DGK V +WDTAGQE
Sbjct: 23 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 81
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDL-- 133
+ + Y LI + + +F+++ ++W E++ H T +LVG K DL
Sbjct: 82 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 140
Query: 134 ----------ESIRNVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIREI 177
+ + ++ +G ++A+ G ++E SAL +K+ F+ IR +
Sbjct: 141 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 195
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K+VI+GD A GK+ LL +++++F P E +E+DGK+V+ +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYIADIEVDGKQVELALWDTAGQED 85
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL--- 133
+ + Y L+ + I + ++I +W E+K H V +LVGNK DL
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRQD 144
Query: 134 ESIR---------NVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIR 175
E R V +EEG+ +A F ++E SA V+ FE+ R
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 196
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 85/175 (48%), Gaps = 16/175 (9%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K V++GD AVGK+ LL Y N F T+ + M +DGK V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDL-- 133
+ + Y LI + + +F+++ ++W E++ H T +LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 134 ----------ESIRNVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIREI 177
+ + ++ +G ++A+ G ++E SAL +K+ F+ IR +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 85/175 (48%), Gaps = 16/175 (9%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K V++GD AVGK+ LL Y N F T+ + M +DGK V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDL-- 133
+ + Y LI + + +F+++ ++W E++ H T +LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 134 ----------ESIRNVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIREI 177
+ + ++ +G ++A+ G ++E SAL +K+ F+ IR +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 17/170 (10%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
KIV++GDS GK+ LL +A++ F P + E T S EID + ++ +WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCF-PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDLES- 135
+ V Y + LI +DI+R T DS+ +W E++ T +LVG K DL +
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNT-KMLLVGCKSDLRTD 126
Query: 136 ------IRN-----VSTEEGKSLAEAEGLF-FMETSALDSTN-VKSAFEI 172
+ N VS ++G ++A+ G ++E SAL S N V+ F +
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV 176
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 17/170 (10%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
KIV++GDS GK+ LL +A++ F P + E T S EID + ++ +WDT+G
Sbjct: 25 KIVVVGDSQCGKTALLHVFAKDCF-PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 83
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDLES- 135
+ V Y + LI +DI+R T DS+ +W E++ T +LVG K DL +
Sbjct: 84 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNT-KMLLVGCKSDLRTD 142
Query: 136 ------IRN-----VSTEEGKSLAEAEGLF-FMETSALDSTN-VKSAFEI 172
+ N VS ++G ++A+ G ++E SAL S N V+ F +
Sbjct: 143 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV 192
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 85/175 (48%), Gaps = 16/175 (9%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K V++GD AVGK+ LL Y N F T+ + M +DGK V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDL-- 133
+ + Y LI + + +F+++ ++W E++ H T +LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 134 ----------ESIRNVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIREI 177
+ + ++ +G ++A+ G ++E SAL +K+ F+ IR +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 85/175 (48%), Gaps = 16/175 (9%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K V++GD AVGK+ LL Y N F T+ + M +DGK V +WDTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 69
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDL-- 133
+ + Y LI + + +F+++ ++W E++ H T +LVG K DL
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 128
Query: 134 ----------ESIRNVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIREI 177
+ + ++ +G ++A+ G ++E SAL +K+ F+ IR +
Sbjct: 129 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 183
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 17/170 (10%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
KIV++GDS GK+ LL +A++ F P + E T S EID + ++ +WDT+G
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCF-PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 88
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDLES- 135
+ V Y + LI +DI+R T DS+ +W E++ T +LVG K DL +
Sbjct: 89 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNT-KMLLVGCKSDLRTD 147
Query: 136 ------IRN-----VSTEEGKSLAEAEGLF-FMETSALDSTN-VKSAFEI 172
+ N VS ++G ++A+ G ++E SAL S N V+ F +
Sbjct: 148 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV 197
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 84/172 (48%), Gaps = 16/172 (9%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K+VI+GD A GK+ LL ++++F P E +E+DGK+V+ +WDTAG E
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 68
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL--- 133
+ + Y L+ + I + ++I +W E+K H V +LVGNK DL
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 127
Query: 134 ESIR---------NVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIR 175
E R V EEG+ +A G F +ME SA V+ FE+ R
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 179
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 85/175 (48%), Gaps = 16/175 (9%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K V++GD AVGK+ LL Y N F T+ + M +DGK V +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 89
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDL-- 133
+ + Y LI + + +F+++ ++W E++ H T +LVG K DL
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 148
Query: 134 ----------ESIRNVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIREI 177
+ + ++ +G ++A+ G ++E SAL +K+ F+ IR +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 29 KSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88
KS L + +N F TI ++ Q + IDG+ I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 89 AVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLESIRNVSTEEGKSL 147
G L V+ I +F+ I ++ +++K D+ V +LVGNK DL + R V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL-AARTVESRQAQDL 133
Query: 148 AEAEGLFFMETSALDSTNVKSAFEIVIREI 177
A + G+ ++ETSA V+ AF ++REI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K+V++GD A GK+ LL ++++EF P E +E+DGK+V+ +WDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 85
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDLESI 136
+ + Y L+ + + + ++I +W+ E+K H V +LV NK DL S
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANKKDLRSD 144
Query: 137 RNVSTE------------EGKSLA-EAEGLFFMETSALDSTNVKSAFEIVIR 175
+V TE +G+++A + ++E SA V+ FE R
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATR 196
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K V++GD AVGK+ LL Y N F T+ + M +D K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 62
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDL-- 133
+ + Y LI + + +++++ ++W E++ H +T +LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPST-PIILVGTKLDLRD 121
Query: 134 ----------ESIRNVSTEEGKSLA-EAEGLFFMETSALDSTNVKSAFEIVIREI 177
+ + ++ +G +LA E + + ++E SAL +K+ F+ IR +
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 77/151 (50%), Gaps = 3/151 (1%)
Query: 29 KSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88
KS L ++ + F P TI + + EID + + DTAGQE F A+ Y R
Sbjct: 31 KSALTIQFFQKIFVPEYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 89 AVGALIVYDITRRTTFDSISRWLDE-LKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSL 147
G LIVY +T + +F+ + R+ L+ + +LV NK DL +R V+ ++GK +
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 148 AEAEGLFFMETSALDST-NVKSAFEIVIREI 177
A + ++ETSA D NV F ++R I
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 77/151 (50%), Gaps = 3/151 (1%)
Query: 29 KSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88
KS L ++ + F P TI + + EID + + DTAGQE F A+ Y R
Sbjct: 26 KSALTIQFFQKIFVPDYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQEEFSAMREQYMRT 84
Query: 89 AVGALIVYDITRRTTFDSISRWLDE-LKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSL 147
G LIVY +T + +F+ + R+ L+ + +LV NK DL +R V+ ++GK +
Sbjct: 85 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 144
Query: 148 AEAEGLFFMETSALDST-NVKSAFEIVIREI 177
A + ++ETSA D NV F ++R I
Sbjct: 145 ATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 175
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K V++GD AVGK+ LL Y N F T+ + M +D K V +WDTAGQE
Sbjct: 10 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 68
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDL-- 133
+ + Y LI + + +++++ ++W E++ H +T +LVG K DL
Sbjct: 69 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPST-PIILVGTKLDLRD 127
Query: 134 ----------ESIRNVSTEEGKSLA-EAEGLFFMETSALDSTNVKSAFEIVIREI 177
+ + ++ +G +LA E + + ++E SAL +K+ F+ IR +
Sbjct: 128 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 182
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K+VI+GD A GK+ LL ++++F P E +E+DGK+V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQF-PEVYVPTVFENYIADIEVDGKQVELALWDTAGQED 65
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL--- 133
+ + Y L+ + I + ++I +W E+K H V +LVGNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRQD 124
Query: 134 ESIR---------NVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIR 175
E R V +EEG+ +A F ++E SA V+ FE+ R
Sbjct: 125 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 176
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K V++GD AVGK+ LL Y N F T+ + M +D K V +WDTAGQE
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 69
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDL-- 133
+ + Y LI + + +++++ ++W E++ H +T +LVG K DL
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPST-PIILVGTKLDLRD 128
Query: 134 ----------ESIRNVSTEEGKSLA-EAEGLFFMETSALDSTNVKSAFEIVIREI 177
+ + ++ +G +LA E + + ++E SAL +K+ F+ IR +
Sbjct: 129 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 183
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 92/179 (51%), Gaps = 12/179 (6%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75
K V +GD AVGK+ +L Y N+F T+ F + ++ +DG+ V +WDTAGQ
Sbjct: 9 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQ 67
Query: 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDLE 134
E + + YRGA ++ + + + +++++ +W+ EL+ + V +LVG K DL
Sbjct: 68 EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 126
Query: 135 SIRN--------VSTEEGKSLAEAEG-LFFMETSALDSTNVKSAFEIVIREIYSNVSRK 184
+ +++ +G+ L + G ++E S+ NVK+ F+ I+ + RK
Sbjct: 127 DDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 185
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 85/182 (46%), Gaps = 16/182 (8%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K V++GD AVGK+ LL Y N F T+ + M +DGK V +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 62
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDL-- 133
+ + Y LI + + +F+++ ++W E++ H T +LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 134 ----------ESIRNVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIREIYSNVS 182
+ + ++ +G ++A+ G ++E SAL +K+ F+ IR +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181
Query: 183 RK 184
K
Sbjct: 182 VK 183
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 16/182 (8%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K V++GD AVGK+ LL Y N F T+ + M +DGK V +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 62
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDL-- 133
+ + Y LI + + +F+++ ++W E++ H T +LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 134 ----------ESIRNVSTEEGKSLAEAEG-LFFMETSALDSTNVKSAFEIVIREIYSNVS 182
+ + ++ +G ++A+ G + ++E SAL +K+ F+ IR +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181
Query: 183 RK 184
K
Sbjct: 182 VK 183
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 16/175 (9%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K V++GD AVGK+ LL Y N T+ + M +DGK V +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 89
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDL-- 133
+ + Y LI + + +F+++ ++W E++ H T +LVG K DL
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 148
Query: 134 ----------ESIRNVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIREI 177
+ + ++ +G ++A+ G ++E SAL +K+ F+ IR +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 16/175 (9%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K V++GD AVGK+ LL Y N F T+ + M +DGK V +WDTAG E
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 65
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDL-- 133
+ + Y LI + + +F+++ ++W E++ H T +LVG K DL
Sbjct: 66 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 124
Query: 134 ----------ESIRNVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIREI 177
+ + ++ +G ++A+ G ++E SAL +K+ F+ IR +
Sbjct: 125 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 179
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 16/175 (9%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K V++GD AVGK+ LL Y N F T+ + M +DGK V +WDTAG E
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 89
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDL-- 133
+ + Y LI + + +F+++ ++W E++ H T +LVG K DL
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 148
Query: 134 ----------ESIRNVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIREI 177
+ + ++ +G ++A+ G ++E SAL +K+ F+ IR +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+K+V++G VGKS L + +N F TI ++ Q + IDG+ I DTA QE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAAQE 62
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLES 135
+ A+ Y R G L V+ I +F+ I ++ +++K D+ V +LVGNK DL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-A 121
Query: 136 IRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V + + + LA + G+ ++ETSA V+ AF ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+K+V++G VGKS L + +N F TI ++ Q + IDG+ I DTA QE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAAQE 62
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDT-TVARMLVGNKCDLES 135
+ A+ Y R G L V+ I +F+ I ++ +++K D+ V +LVGNK DL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-A 121
Query: 136 IRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
R V + + + LA + G+ ++ETSA V+ AF ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 62/121 (51%), Gaps = 5/121 (4%)
Query: 60 IDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDEL---KT 116
+DG + I DTAGQE F A+ Y R G L+V+ I R +F+ + + ++ K
Sbjct: 52 VDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD 111
Query: 117 HSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIRE 176
D V +LVGNK DLES R V E + + + + E SA NV AFE ++R
Sbjct: 112 RDDFPV--VLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRA 169
Query: 177 I 177
+
Sbjct: 170 V 170
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 16/176 (9%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75
L K V++GD AVGK+ LL Y N F T+ + M +DGK V +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 213
Query: 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDL- 133
E + + Y LI + + +F + ++W E++ H T +LVG K DL
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPI-ILVGTKLDLR 272
Query: 134 -----------ESIRNVSTEEGKSLAEAEG-LFFMETSALDSTNVKSAFEIVIREI 177
+ + ++ +G ++A+ G + ++E SAL +K+ F+ IR +
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 35/194 (18%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K V++GD AVGK+ LL Y N F T+ + M +DGK V +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 64
Query: 77 RFRAVTSAYYRGAVGA-------------------LIVYDITRRTTFDSI-SRWLDELKT 116
+ + Y VG LI + + +F+++ ++W E++
Sbjct: 65 DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 117 HSDTTVARMLVGNKCDL------------ESIRNVSTEEGKSLAEAEGLF-FMETSALDS 163
H T +LVG K DL + + ++ +G ++A+ G ++E SAL
Sbjct: 125 HCPNT-PIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 183
Query: 164 TNVKSAFEIVIREI 177
+K+ F+ IR +
Sbjct: 184 RGLKTVFDEAIRAV 197
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 16/176 (9%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75
L K V++GD AVGK+ LL Y N F T+ + M +DGK V +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 213
Query: 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDL- 133
E + + Y LI + + +F + ++W E++ H T +LVG K DL
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPI-ILVGTKLDLR 272
Query: 134 -----------ESIRNVSTEEGKSLAEAEG-LFFMETSALDSTNVKSAFEIVIREI 177
+ + ++ +G ++A+ G + ++E SAL +K+ F+ IR +
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 16/176 (9%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75
L K V++GD AVGK+ LL Y N F T+ + M +DGK V +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 213
Query: 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDL- 133
E + + Y LI + + +F + ++W E++ H T +LVG K DL
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPI-ILVGTKLDLR 272
Query: 134 -----------ESIRNVSTEEGKSLAEAEG-LFFMETSALDSTNVKSAFEIVIREI 177
+ + ++ +G ++A+ G + ++E SAL +K+ F+ IR +
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Query: 59 EIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDE-LKTH 117
EID + + DTAGQE F A+ Y R G LIVY +T + +F+ + R+ L+
Sbjct: 60 EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK 119
Query: 118 SDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDST-NVKSAFEIVIRE 176
+ +LV NK DL +R V+ ++GK +A + ++ETSA D NV F ++R
Sbjct: 120 DRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRV 179
Query: 177 I 177
I
Sbjct: 180 I 180
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Query: 59 EIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDE-LKTH 117
EID + + DTAGQE F A+ Y R G LIVY +T + +F+ + R+ L+
Sbjct: 60 EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK 119
Query: 118 SDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDST-NVKSAFEIVIRE 176
+ +LV NK DL +R V+ ++GK +A + ++ETSA D NV F ++R
Sbjct: 120 DRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRV 179
Query: 177 I 177
I
Sbjct: 180 I 180
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75
++K++++G VGKS L + E P ++A G + +S+ +DG+E ++D Q
Sbjct: 7 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYDIWEQ 64
Query: 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTT-VARMLVGNKCDLE 134
+ R + +IVY +T + +F+ S +L+ T V +LVGNK DL
Sbjct: 65 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 124
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
R VS +EG++ A F+ETSA NV++ FE V+R+I
Sbjct: 125 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75
++K++++G VGKS L + E P ++A G + +S+ +DG+E ++D Q
Sbjct: 7 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYDIWEQ 64
Query: 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTT-VARMLVGNKCDLE 134
+ R + +IVY +T + +F+ S +L+ T V +LVGNK DL
Sbjct: 65 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 124
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
R VS +EG++ A F+ETSA NV++ FE V+R+I
Sbjct: 125 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75
++K++++G VGKS L + E P ++A G + +S+ +DG+E ++D Q
Sbjct: 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYDIWEQ 59
Query: 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTT-VARMLVGNKCDLE 134
+ R + +IVY +T + +F+ S +L+ T V +LVGNK DL
Sbjct: 60 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
R VS +EG++ A F+ETSA NV++ FE V+R+I
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 16/171 (9%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K V++GD AVGK++L+ Y N + P + + + +DG+ V+ Q+ DTAGQ+
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL-ES 135
F + Y L+ + + ++F ++S +W+ E++ H +LVG + DL E
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLRED 139
Query: 136 I-----------RNVSTEEGKSLA-EAEGLFFMETSALDSTNVKSAFEIVI 174
+ + V E K LA E + ++E SAL N+K F+ I
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAI 190
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 3/157 (1%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+++ + G VGKS+L+ R+ + F T+ ++ Q + D QI DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDEL-KTHSDT-TVARMLVGNKCDLE 134
+F A+ ++VY IT R + + + +++ + D ++ MLVGNKCD
Sbjct: 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 135 SIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFE 171
R V + E ++LA FMETSA + NVK F+
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQ 159
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 16/172 (9%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K+VI+GD A GK+ LL ++ +F P E +E+DG+ V+ +WDTAGQE
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQF-PEVYVPTVFENYVADVEVDGRRVELALWDTAGQED 70
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL--- 133
+ + Y + LI + I + +++ +W+ E+ H V +LVG K DL
Sbjct: 71 YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEV-LHFCQGVPIILVGCKVDLRND 129
Query: 134 ---------ESIRNVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEIVIR 175
E + V+++EG+S+A+ G + E SA V+ FE R
Sbjct: 130 PQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATR 181
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 16/178 (8%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75
+ K V++GD AVGK+ LL YA + F P + S+ + GK+ ++DTAGQ
Sbjct: 18 MLKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ 76
Query: 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDLE 134
E + + Y LI + + +F ++ W+ ELK ++ V +L+G + DL
Sbjct: 77 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLR 135
Query: 135 SI------------RNVSTEEGKSLAEAEG-LFFMETSALDSTNVKSAFEIVIREIYS 179
+ + E+G+ LA+ G ++E SAL +K+ F+ I I +
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILT 193
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 79/150 (52%), Gaps = 2/150 (1%)
Query: 29 KSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88
KS L ++ F TI +F + +E+D +I DTAG E+F ++ Y +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 89 AVGALIVYDITRRTTFDSISRWLDEL-KTHSDTTVARMLVGNKCDLESIRNVSTEEGKSL 147
G ++VY + + +F I D++ + V +LVGNK DLES R VS+ EG++L
Sbjct: 75 GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 148 AEAEGLFFMETSALDSTNVKSAFEIVIREI 177
AE G FMETSA T V F ++R++
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 17/171 (9%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKA-TIGVEFQTQSMEIDGKE---VKAQIWDT 72
+++V+IG+ VGKS L + +A + S +G + +++ +DG+ + +W+
Sbjct: 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 97
Query: 73 AGQERF-----RAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTT-VARML 126
G+ + V AY LIVY IT R +F+ S +L+ T + +L
Sbjct: 98 KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 150
Query: 127 VGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
VGNK DL R VS EG++ A F+ETSA NVK FE ++R++
Sbjct: 151 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 17/171 (9%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKA-TIGVEFQTQSMEIDGKE---VKAQIWDT 72
+++V+IG+ VGKS L + +A + S +G + +++ +DG+ + +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 73 AGQERF-----RAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTT-VARML 126
G+ + V AY LIVY IT R +F+ S +L+ T + +L
Sbjct: 67 KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 127 VGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
VGNK DL R VS EG++ A F+ETSA NVK FE ++R++
Sbjct: 120 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 86/171 (50%), Gaps = 17/171 (9%)
Query: 17 FKIVIIGDSAVGKSNLLSRYAR-NEFNPHSKATIGVEFQTQSMEIDGKE---VKAQIWDT 72
+++V+IG+ VGKS L + +A ++ +G + +++ +DG+ + +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 73 AGQERF-----RAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTT-VARML 126
G+ + V AY LIVY IT R +F+ S +L+ T + +L
Sbjct: 67 KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 127 VGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
VGNK DL R VS EG++ A F+ETSA NVK FE ++R++
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 86/171 (50%), Gaps = 17/171 (9%)
Query: 17 FKIVIIGDSAVGKSNLLSRYAR-NEFNPHSKATIGVEFQTQSMEIDGKE---VKAQIWDT 72
+++V+IG+ VGKS L + +A ++ +G + +++ +DG+ + +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 73 AGQERF-----RAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTT-VARML 126
G+ + V AY LIVY IT R +F+ S +L+ T + +L
Sbjct: 67 KGENEWLHDHXMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 127 VGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
VGNK DL R VS EG++ A F+ETSA NVK FE ++R++
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 23/187 (12%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K+V++GD GK+ +L A++ + P + E T +E + + V+ +WDT+G
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCY-PETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 71
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDS-ISRWLDELKTHSDTTVARMLVGNKCDL--- 133
+ V Y + L+ +DI+R T DS + +W E+ + +T +L+G K DL
Sbjct: 72 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV-LLIGCKTDLRTD 130
Query: 134 ---------ESIRNVSTEEGKSLAEAEGL-FFMETSALDSTNVKSAFEIVIREIYSNVSR 183
+ +S E+G ++A+ G ++E SA S E I I+ S
Sbjct: 131 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS-------EKSIHSIFRTASM 183
Query: 184 KVLNSDS 190
LN S
Sbjct: 184 LCLNKPS 190
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 23/187 (12%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K+V++GD GK+ +L A++ + P + E T +E + + V+ +WDT+G
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCY-PETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 87
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDS-ISRWLDELKTHSDTTVARMLVGNKCDL--- 133
+ V Y + L+ +DI+R T DS + +W E+ + +T +L+G K DL
Sbjct: 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV-LLIGCKTDLRTD 146
Query: 134 ---------ESIRNVSTEEGKSLAEAEGL-FFMETSALDSTNVKSAFEIVIREIYSNVSR 183
+ +S E+G ++A+ G ++E SA S E I I+ S
Sbjct: 147 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS-------EKSIHSIFRTASM 199
Query: 184 KVLNSDS 190
LN S
Sbjct: 200 LCLNKPS 206
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 23/187 (12%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K+V++GD GK+ +L A++ + P + E T +E + + V+ +WDT+G
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCY-PETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 70
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDS-ISRWLDELKTHSDTTVARMLVGNKCDL--- 133
+ V Y + L+ +DI+R T DS + +W E+ + +T +L+G K DL
Sbjct: 71 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV-LLIGCKTDLRTD 129
Query: 134 ---------ESIRNVSTEEGKSLAEAEGL-FFMETSALDSTNVKSAFEIVIREIYSNVSR 183
+ +S E+G ++A+ G ++E SA S E I I+ S
Sbjct: 130 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS-------EKSIHSIFRTASM 182
Query: 184 KVLNSDS 190
LN S
Sbjct: 183 LCLNKPS 189
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKA---QIW-- 70
+FK++++G+S VGKS L + + + + + + + +D +EV IW
Sbjct: 23 IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQ 82
Query: 71 -DTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELK---THSDTTVARML 126
D G R + + LIV+ +T R +F + L L+ H D V +L
Sbjct: 83 GDAGGWLRDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPV--IL 135
Query: 127 VGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
VGNK DL R VS EEG+ LA +ETSA N + FE +R+I
Sbjct: 136 VGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 82/169 (48%), Gaps = 16/169 (9%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K V++GD AVGK+ LL Y N+F T+ + M I G+ ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 62
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL-- 133
+ + Y L+ + + ++F+++ +W+ E+ H T +LVG + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 134 -----ESI-----RNVSTEEGKSLA-EAEGLFFMETSALDSTNVKSAFE 171
E + + ++ E + LA + + + ++E SAL +K+ F+
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD 170
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 82/169 (48%), Gaps = 16/169 (9%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K V++GD AVGK+ LL Y N+F T+ + M I G+ ++DTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 63
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL-- 133
+ + Y L+ + + ++F+++ +W+ E+ H T +LVG + DL
Sbjct: 64 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 122
Query: 134 -----ESI-----RNVSTEEGKSLA-EAEGLFFMETSALDSTNVKSAFE 171
E + + ++ E + LA + + + ++E SAL +K+ F+
Sbjct: 123 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD 171
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K V++GD AVGK+ LL Y N+F T+ + M I G+ ++DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 65
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL--- 133
+ + Y L+ + + ++F+++ +W+ E+ H T +LVG + DL
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 124
Query: 134 ----ESI-----RNVSTEEGKSLA-EAEGLFFMETSALDSTNVKSAFEIVI 174
E + + ++ E + LA + + + ++E SAL +K+ F+ I
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 175
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 16/172 (9%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K V++GD AVGK+ LL Y N+F T+ + M I G+ ++DTAGQE
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 65
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL-- 133
+ + Y L+ + + ++F+++ +W+ E+ H T +LVG + DL
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 124
Query: 134 -----ESI-----RNVSTEEGKSLA-EAEGLFFMETSALDSTNVKSAFEIVI 174
E + + ++ E + LA + + + ++E SAL +K+ F+ I
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K V++GD AVGK+ LL Y N+F T+ + M I G+ ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 63
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL--- 133
+ + Y L+ + + ++F+++ +W+ E+ H T +LVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 134 ----ESI-----RNVSTEEGKSLA-EAEGLFFMETSALDSTNVKSAFE 171
E + + ++ E + LA + + + ++E SAL +K+ F+
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD 170
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 16/172 (9%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K V++GD AVGK+ LL Y N+F T+ + M I G+ ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 62
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL-- 133
+ + Y L+ + + ++F+++ +W+ E+ H T +LVG + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 134 -----ESI-----RNVSTEEGKSLA-EAEGLFFMETSALDSTNVKSAFEIVI 174
E + + ++ E + LA + + + ++E SAL +K+ F+ I
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K V++GD AVGK+ LL Y N+F T+ + M I G+ ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 63
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL--- 133
+ + Y L+ + + ++F+++ +W+ E+ H T +LVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 134 ----ESI-----RNVSTEEGKSLA-EAEGLFFMETSALDSTNVKSAFE 171
E + + ++ E + LA + + + ++E SAL +K+ F+
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD 170
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K V++GD AVGK+ LL Y N+F T+ + M I G+ ++DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 65
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL--- 133
+ + Y L+ + + ++F+++ +W+ E+ H T +LVG + DL
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 124
Query: 134 ----ESI-----RNVSTEEGKSLA-EAEGLFFMETSALDSTNVKSAFE 171
E + + ++ E + LA + + + ++E SAL +K+ F+
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD 172
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 9/177 (5%)
Query: 18 KIVIIGDSAVGKSNLLSRYAR--NEFNPHSKATIGVEFQTQSMEIDGKEVKAQIW--DTA 73
K+ ++G++ VGKS L+S + ++F T GVE + I V +++ DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 74 GQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKT---HSDTTVARMLVGNK 130
G + ++ S Y+ G A++V+D++ +F+S W + LK+ + + +LV NK
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 131 CDLESIRN-VSTEEGKSLAEAEGLFFMETSA-LDSTNVKSAFEIVIREIYSNVSRKV 185
DL R+ V + + A L F + SA + + F + Y N KV
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYEDKV 198
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K V++GD AVGK+ LL Y N+F T+ + M I G+ ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 63
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL--- 133
+ + Y L+ + + ++F+++ +W+ E+ H T +LVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 134 ----ESI-----RNVSTEEGKSLA-EAEGLFFMETSALDSTNVKSAFEIVI 174
E + + ++ E + LA + + + ++E SAL +K+ F+ I
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K V++GD AVGK+ LL Y N+F T+ + M I G+ ++DTAGQE
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 67
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL--- 133
+ + Y L+ + + ++F+++ +W+ E+ H T +LVG + DL
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 126
Query: 134 ----ESI-----RNVSTEEGKSLA-EAEGLFFMETSALDSTNVKSAFE 171
E + + ++ E + LA + + + ++E SAL +K+ F+
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD 174
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K V++GD AVGK+ LL Y N+F T+ + M I G+ ++DTAGQE
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 73
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL--- 133
+ + Y L+ + + ++F+++ +W+ E+ H T +LVG + DL
Sbjct: 74 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 132
Query: 134 ----ESI-----RNVSTEEGKSLA-EAEGLFFMETSALDSTNVKSAFEIVI 174
E + + ++ E + LA + + + ++E SAL +K+ F+ I
Sbjct: 133 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 183
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 82/169 (48%), Gaps = 16/169 (9%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K V++GD AVGK+ LL Y N+F T+ + M I G+ ++DTAGQE
Sbjct: 4 IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 62
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL-- 133
+ + Y L+ + + ++F+++ +W+ E+ H T +LVG + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 134 -----ESI-----RNVSTEEGKSLA-EAEGLFFMETSALDSTNVKSAFE 171
E + + ++ E + LA + + + ++E SAL +K+ F+
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD 170
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K V++GD AVGK+ LL Y N+F T+ + M I G+ ++DTAGQE
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 66
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL--- 133
+ + Y L+ + + ++F+++ +W+ E+ H T +LVG + DL
Sbjct: 67 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 125
Query: 134 ----ESI-----RNVSTEEGKSLA-EAEGLFFMETSALDSTNVKSAFEIVI 174
E + + ++ E + LA + + + ++E SAL +K+ F+ I
Sbjct: 126 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 16/172 (9%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K V++GD AVGK+ LL Y N+F T+ + M I G+ ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 69
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL-- 133
+ + Y L+ + + ++F+++ +W+ E+ H T +LVG + DL
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 128
Query: 134 -----ESI-----RNVSTEEGKSLA-EAEGLFFMETSALDSTNVKSAFEIVI 174
E + + ++ E + LA + + + ++E SAL +K+ F+ I
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K V++GD AVGK+ LL Y N+F T+ + M I G+ ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 63
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL--- 133
+ + Y L+ + + ++F+++ +W+ E+ H T +LVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 134 ----ESI-----RNVSTEEGKSLA-EAEGLFFMETSALDSTNVKSAFE 171
E + + ++ E + LA + + + ++E SAL +K+ F+
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFD 170
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K V++GD AVGK+ LL Y N+F T+ + M I G+ ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 63
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL--- 133
+ + Y L+ + + ++F+++ +W+ E+ H T +LVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 134 ----ESI-----RNVSTEEGKSLA-EAEGLFFMETSALDSTNVKSAFE 171
E + + ++ E + LA + + + ++E SAL +K+ F+
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFD 170
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 82/174 (47%), Gaps = 22/174 (12%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEF-NPHSKATIGVEFQTQSMEIDGKEVKA---QIW- 70
+FK++++G+S VGKS L + + N H ++ + M +D +EV IW
Sbjct: 12 VFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIM-VDKEEVTLIVYDIWE 70
Query: 71 --DTAG--QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELK---THSDTTVA 123
D G Q+ A+ LIV+ +T R +F + L L+ H D V
Sbjct: 71 QGDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPV- 122
Query: 124 RMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
+LVGNK DL R VS EEG+ LA +ETSA N + FE +R+I
Sbjct: 123 -ILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K V++GD AVGK+ LL Y N+F T+ + M I G+ ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 69
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL-- 133
+ + Y L+ + + ++F+++ +W+ E+ H T +LVG + DL
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 128
Query: 134 ----------ESIRNVSTEEGKSLA-EAEGLFFMETSALDSTNVKSAFEIVI 174
+ ++ E + LA + + + ++E SAL +K+ F+ I
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 81/173 (46%), Gaps = 20/173 (11%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKA---QIW-- 70
+FK++++G+S VGKS L + + + + + + + +D +EV IW
Sbjct: 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 71 -DTAG--QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELK---THSDTTVAR 124
D G Q+ A+ LIV+ +T R +F + L L+ H D V
Sbjct: 62 GDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPV-- 112
Query: 125 MLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177
+LVGNK DL R VS EEG+ LA +ETSA N + FE +R+I
Sbjct: 113 ILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 84/172 (48%), Gaps = 16/172 (9%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K V++GD AVGK+ LL Y N+F T+ + ++ I G+ ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQE 62
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL-- 133
+ + Y L+ + + ++F+++ +W+ E+ H T +LVG + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 134 -----ESI-----RNVSTEEGKSLA-EAEGLFFMETSALDSTNVKSAFEIVI 174
E + + ++ E + LA + + + ++E SAL +K+ F+ I
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K V++GD AVGK+ LL Y N+F T+ + M I G+ + DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLRDTAGQE 62
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL-- 133
+ + Y L+ + + ++F+++ +W+ E+ H T +LVG + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 134 -----ESI-----RNVSTEEGKSLA-EAEGLFFMETSALDSTNVKSAFE 171
E + + ++ E + LA + + + ++E SAL +K+ F+
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD 170
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K V++GD AVGK+ LL Y N+F + + M I G+ ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVM-IGGEPYTLGLFDTAGQED 63
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL--- 133
+ + Y L+ + + ++F+++ +W+ E+ H T +LVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 134 ----ESI-----RNVSTEEGKSLA-EAEGLFFMETSALDSTNVKSAFE 171
E + + ++ E + LA + + + ++E SAL +K+ F+
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD 170
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K V++GD AVGK+ LL Y N+ T+ + M I G+ ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 62
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL-- 133
+ + Y L+ + + ++F+++ +W+ E+ H T +LVG + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 134 -----ESI-----RNVSTEEGKSLA-EAEGLFFMETSALDSTNVKSAFE 171
E + + ++ E + LA + + + ++E SAL +K+ F+
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD 170
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
K V++GD AVGK+ LL Y N+F T+ + M I G+ ++DTAG E
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGLE 66
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL-- 133
+ + Y L+ + + ++F+++ +W+ E+ H T +LVG + DL
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 125
Query: 134 -----ESI-----RNVSTEEGKSLA-EAEGLFFMETSALDSTNVKSAFE 171
E + + ++ E + LA + + + ++E SAL +K+ F+
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD 174
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K V++GD AVGK+ LL Y N+F T+ + M I G+ ++DTAG E
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGLED 63
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDL--- 133
+ + Y L+ + + ++F+++ +W+ E+ H T +LVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 134 ----ESI-----RNVSTEEGKSLA-EAEGLFFMETSALDSTNVKSAFE 171
E + + ++ E + LA + + + ++E SAL +K+ F+
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD 170
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 10/169 (5%)
Query: 29 KSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88
KS+L+ R+ + F TI ++ Q + D QI DT G +F A+
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 89 AVGALIVYDITRRTTFD---SISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGK 145
++V+ +T + + + I + + ++K S + MLVGNKCD E+ R V T E +
Sbjct: 80 GHAFILVFSVTSKQSLEELGPIYKLIVQIK-GSVEDIPVMLVGNKCD-ETQREVDTREAQ 137
Query: 146 SLAEAEGLFFMETSALDSTNVKSAF-EIVIREIYSNVSRKVLNSDSYKA 193
++A+ FMETSA + NVK F E++ E N+S LN D ++
Sbjct: 138 AVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMS---LNIDGKRS 183
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 14/166 (8%)
Query: 19 IVIIGDSAVGKSNL----LSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74
+ I+G GKS L L++ +E++P+ + T E +D + V ++ DTA
Sbjct: 24 LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSE-----ETVDHQPVHLRVMDTAD 78
Query: 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTT---VARMLVGNKC 131
+ R Y A L+VY + R +FDS S +L+ L H+ T + +L+GNK
Sbjct: 79 LDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKL 137
Query: 132 DLESIRNVSTEEGKSLAEAEGLFFMETSA-LDSTNVKSAFEIVIRE 176
D+ R V+ EG +LA G F E SA LD +V+ F +RE
Sbjct: 138 DMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVRE 183
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K++I+G GK+ +L +++ NE H+ TIG + EI + +WD GQE
Sbjct: 23 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVE----EIVINNTRFLMWDIGGQES 77
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLV-GNKCDLESI 136
R+ + YY ++V D T R L ++ H D A +L+ NK D++
Sbjct: 78 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 137
Query: 137 RNVS 140
V+
Sbjct: 138 MTVA 141
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K++I+G GK+ +L +++ NE H+ TIG + EI + +WD GQE
Sbjct: 24 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVE----EIVINNTRFLMWDIGGQES 78
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLV-GNKCDLESI 136
R+ + YY ++V D T R L ++ H D A +L+ NK D++
Sbjct: 79 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 138
Query: 137 RNVS 140
V+
Sbjct: 139 MTVA 142
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K++I+G GK+ +L +++ NE H+ TIG + EI + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVE----EIVINNTRFLMWDIGGQES 72
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLV-GNKCDLESI 136
R+ + YY ++V D T R L ++ H D A +L+ NK D++
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132
Query: 137 RNVS 140
V+
Sbjct: 133 MTVA 136
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K++I+G GK+ +L +++ NE H+ TIG + EI + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVE----EIVINNTRFLMWDIGGQES 72
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLV-GNKCDLESI 136
R+ + YY ++V D T R L ++ H D A +L+ NK D++
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132
Query: 137 RNVS 140
V+
Sbjct: 133 MTVA 136
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
K++I+G GK+ +L ++ NE H+ TIG + EI K +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFLMNEV-VHTSPTIGSNVE----EIVVKNTHFLMWDIGGQES 72
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLV-GNKCDLE 134
R+ + YY ++V D R L + H D A +L+ NK D++
Sbjct: 73 LRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMK 130
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+I+++G A GK+ +L + + + + T+G +T + K VK +WD GQ+
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 377
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLV-GNKCDLE 134
+ R + YY G G + V D R D + L + + A +L+ NK DL
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 436
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+I+++G A GK+ +L + + + + T+G +T + K VK +WD GQ+
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGQD 68
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLV-GNKCDLE 134
+ R + YY G G + V D R D + L + + A +L+ NK DL
Sbjct: 69 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 127
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+I+++G A GK+ +L + + + + T+G +T + K VK +WD GQ+
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGQD 67
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLV-GNKCDLE 134
+ R + YY G G + V D R D + L + + A +L+ NK DL
Sbjct: 68 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 126
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+I+++G A GK+ +L + + + + T+G +T + K VK +WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGQD 55
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLV-GNKCDLE 134
+ R + YY G G + V D R D + L + + A +L+ NK DL
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 114
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+I+++G A GK+ +L + + + + T+G +T + K VK +WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGQD 55
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLV-GNKCDLE 134
+ R + YY G G + V D R D + L + + A +L+ NK DL
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 114
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 7/122 (5%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNP--HSKATIGVEFQTQSMEIDGK---EVKAQIWDT 72
K+ I+G++ GK+ LL + + + + AT+G++ + ++I K ++ +WD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 73 AGQERFRAVTSAYYRGAVGALIVYDITR-RTTFDSISRWLDELKTHSDTTVARMLVGNKC 131
AG+E F + + L VYD+++ + D+ WL +K + ++ +LVG
Sbjct: 64 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPV-ILVGTHL 122
Query: 132 DL 133
D+
Sbjct: 123 DV 124
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 7/122 (5%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNP--HSKATIGVEFQTQSMEIDGK---EVKAQIWDT 72
K+ I+G++ GK+ LL + + + + AT+G++ + ++I K ++ +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 73 AGQERFRAVTSAYYRGAVGALIVYDITR-RTTFDSISRWLDELKTHSDTTVARMLVGNKC 131
AG+E F + + L VYD+++ + D+ WL +K + ++ +LVG
Sbjct: 62 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPV-ILVGTHL 120
Query: 132 DL 133
D+
Sbjct: 121 DV 122
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 6/117 (5%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+I+I+G GK+ +L R E +K TIG +T S K +K +WD GQ
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSY----KNLKLNVWDLGGQT 73
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLV-GNKCD 132
R YY + V D T + + S+ L + + A +LV NK D
Sbjct: 74 SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQD 130
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
+I+ +G A GK+ +L + + + + T+G +T + K VK +WD GQ++
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDK 56
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLV-GNKCDLE 134
R + YY G G + V D R D + L + + A +L+ NK DL
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLP 114
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 12/128 (9%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+I+++G A GK+ +L + E + TIG +T ++ K + +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNICFTVWDVGGQD 72
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVAR----MLVGNKCD 132
R R + Y++ G + V D R ++ DEL+ R +L NK D
Sbjct: 73 RIRPLWKHYFQNTQGLIFVVDSNDRERIQEVA---DELQKMLLVDELRDAVLLLFANKQD 129
Query: 133 LESIRNVS 140
L + +S
Sbjct: 130 LPNAMAIS 137
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 16/123 (13%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+I+++G GK+ +L + E + TIG +T + K + +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQYKNISFTVWDVGGQD 72
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTF----DSISRWL--DELKTHSDTTVARMLVGNK 130
R R++ YYR G + V D R+ + + R L DEL+ A ++ NK
Sbjct: 73 RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELR-----NAAWLVFANK 127
Query: 131 CDL 133
DL
Sbjct: 128 QDL 130
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 16/123 (13%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+I+++G GK+ +L + E + TIG +T + K + +WD GQ+
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQYKNISFTVWDVGGQD 55
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTF----DSISRWL--DELKTHSDTTVARMLVGNK 130
R R++ YYR G + V D R+ + + R L DEL+ A ++ NK
Sbjct: 56 RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELR-----NAAWLVFANK 110
Query: 131 CDL 133
DL
Sbjct: 111 QDL 113
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
++ ++G GK+ ++ A +FN T+G + +I V ++WD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR----KITKGNVTIKLWDIGGQP 78
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTT-VARMLVGNKCDL 133
RFR++ Y RG + + D + ++ L L + +++GNK DL
Sbjct: 79 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 136
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+I+++G A GK+ +L + + + + T+G +T + K VK +WD G +
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGLD 68
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLV-GNKCDLE 134
+ R + YY G G + V D R D + L + + A +L+ NK DL
Sbjct: 69 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 127
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+I+++G A GK+ +L + + + + T+G +T + K VK +WD G +
Sbjct: 3 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGLD 57
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLV-GNKCDLE 134
+ R + YY G G + V D R D + L + + A +L+ NK DL
Sbjct: 58 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 116
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+I+++G GK+ +L + E + TIG +T + K + +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQYKNISFTVWDVGGQD 72
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLV-GNKCDL 133
R R++ YYR G + V D R+ + + + A LV NK DL
Sbjct: 73 RIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDL 130
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+I+++G A GK+ +L + + + + T+G +T + K VK +WD G +
Sbjct: 4 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGLD 58
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLV-GNKCDLE 134
+ R + YY G G + V D R D + L + + A +L+ NK DL
Sbjct: 59 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 117
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 5/120 (4%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
++ ++G GK+ ++ A +FN T+G + +I V ++WD GQ
Sbjct: 32 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR----KITKGNVTIKLWDIGGQP 87
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTT-VARMLVGNKCDLES 135
RFR++ Y RG + + D + ++ L L + +++GNK DL
Sbjct: 88 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 147
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 11/123 (8%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
++ ++G GK+ ++ A +F+ T+G + ++ V +IWD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMR----KVTKGNVTIKIWDIGGQP 78
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTT----VARMLVGNKCD 132
RFR++ Y RG + + D R ++ SR +EL D + +++GNK D
Sbjct: 79 RFRSMWERYCRGVNAIVYMIDAADREKIEA-SR--NELHNLLDKPQLQGIPVLVLGNKRD 135
Query: 133 LES 135
L +
Sbjct: 136 LPN 138
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+I+++G A GK+ +L + E + TIG +T ++ K + +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLV-GNKCDLES 135
+ R + Y++ G + V D R + L + + A +LV NK DL +
Sbjct: 73 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 132
Query: 136 IRNVS 140
N +
Sbjct: 133 AMNAA 137
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+I+++G A GK+ +L + E + TIG +T ++ K + +WD GQ+
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 55
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLV-GNKCDLES 135
+ R + Y++ G + V D R + L + + A +LV NK DL +
Sbjct: 56 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115
Query: 136 IRNVS 140
N +
Sbjct: 116 AMNAA 120
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+I+++G A GK+ +L + E + TIG +T ++ K + +WD GQ+
Sbjct: 17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 71
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLV-GNKCDLES 135
+ R + Y++ G + V D R + L + + A +LV NK DL +
Sbjct: 72 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 131
Query: 136 IRNVS 140
N +
Sbjct: 132 AMNAA 136
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+I+++G A GK+ +L + E + TIG +T ++ K + +WD GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 220
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLV-GNKCDLES 135
+ R + Y++ G + V D R + L + + A +LV NK DL +
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 280
Query: 136 IRNVS 140
N +
Sbjct: 281 AMNAA 285
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 16/130 (12%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+I+++G A GK+ +L + E + TIG +T ++ K + +WD GQ+
Sbjct: 21 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET----VEYKNISFTVWDVGGQD 75
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTF----DSISRWL--DELKTHSDTTVARMLVGNK 130
+ R + Y++ G + V D R D + R L DEL+ ++ NK
Sbjct: 76 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR-----DAVLLVFANK 130
Query: 131 CDLESIRNVS 140
DL + N +
Sbjct: 131 QDLPNAMNAA 140
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
+I+++G A GK+ +L + E + TIG +T ++ + + +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKVKLGEV-VTTIPTIGFNVET----VEFRNISFTVWDVGGQDK 73
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLV-GNKCDLES 135
R + YY G + V D R D L + + A +LV NK DL +
Sbjct: 74 IRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPN 132
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+I+++G A GK+++L + E + TIG +T ++ K + +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTSILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLV-GNKCDLES 135
+ R + YY+ + V D R L ++ + A +LV NK DL
Sbjct: 73 KIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQ 132
Query: 136 IRNVS 140
++S
Sbjct: 133 AMSIS 137
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+I+++G A GK+ +L + E + TIG +T ++ K + +WD GQ+
Sbjct: 30 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET----VEYKNICFTVWDVGGQD 84
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLV-GNKCDLES 135
+ R + Y++ G + V D R + L ++ + A +LV NK D+ +
Sbjct: 85 KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144
Query: 136 IRNVS 140
VS
Sbjct: 145 AMPVS 149
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+++++G GK+ +L ++ + + S T+G +T ++ + K IWD GQ+
Sbjct: 17 LRLLMLGLDNAGKTTILKKFNGEDIDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQK 71
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLV-GNKCDL 133
R+ Y+ G + V D R R L L A +L+ NK DL
Sbjct: 72 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 129
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 6/120 (5%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+++++G GK+ +L ++ + + S T+G +T ++ + K IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQK 73
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLV-GNKCDLES 135
R+ Y+ G + V D R R L L A +L+ NK DL
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 133
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+++++G GK+ +L ++ + + S T+G +T ++ + K IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQK 73
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLV-GNKCDL 133
R+ Y+ G + V D R R L L A +L+ NK DL
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 6/125 (4%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+I+++G A GK+ +L + E + TIG +T ++ K + +WD G +
Sbjct: 3 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGLD 57
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLV-GNKCDLES 135
+ R + Y++ G + V D R + L + + A +LV NK DL +
Sbjct: 58 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 117
Query: 136 IRNVS 140
N +
Sbjct: 118 AMNAA 122
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 66/172 (38%), Gaps = 19/172 (11%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+I+I+G GK+ +L R E + TIG +T + K +K Q+WD GQ
Sbjct: 3 MRILILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVET----VTYKNLKFQVWDLGGQT 57
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFD-SISRWLDELKTHSDTTVARMLVGNKCDLES 135
R YY + V D R S S + L+ ++ NK D+E
Sbjct: 58 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 117
Query: 136 IRNVSTEEGKSLAEAEGLF--------FMETSALDSTNVKSAFEIVIREIYS 179
S +A A GL +TSA T + A E ++ + S
Sbjct: 118 AMTPS-----EMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 164
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQT-QSMEIDG-------KEVKAQ 68
K+ +IGD GK++LL + F+P T G+ T Q+ I G KE
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101
Query: 69 IWDTAGQERFRA 80
WD GQE A
Sbjct: 102 FWDFGGQEIMHA 113
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 6/121 (4%)
Query: 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75
+ +++++G GK+ +L ++ + + S T+G +T ++ + K IWD G
Sbjct: 1 MLRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGL 55
Query: 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLV-GNKCDLE 134
+ R+ Y+ G + V D R R L L A +L+ NK DL
Sbjct: 56 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 115
Query: 135 S 135
Sbjct: 116 G 116
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
+I+++G GK+ LL + A + + H T G F +S++ G K +WD GQ +
Sbjct: 19 RILLLGLDNAGKTTLLKQLASEDIS-HITPTQG--FNIKSVQSQG--FKLNVWDIGGQRK 73
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFD 105
R +Y+ + V D R F+
Sbjct: 74 IRPYWRSYFENTDILIYVIDSADRKRFE 101
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
+I+++G GK+ LL + A + + H T G F +S++ G K +WD GQ +
Sbjct: 18 RILLLGLDNAGKTTLLKQLASEDIS-HITPTQG--FNIKSVQSQG--FKLNVWDIGGQRK 72
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFD 105
R +Y+ + V D R F+
Sbjct: 73 IRPYWRSYFENTDILIYVIDSADRKRFE 100
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 6/118 (5%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+I+++G GK+ +L + E + TIG F + ++ + +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIG--FNVECVQY--CNISFTVWDVGGQD 72
Query: 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLV-GNKCDL 133
R R++ YY G + V D R+ + + + A LV NK DL
Sbjct: 73 RIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFANKQDL 130
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
+I+++G GK+ LL + A + + H T G F +S++ G K +WD GQ +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDIS-HITPTQG--FNIKSVQSQG--FKLNVWDIGGQRK 60
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFD 105
R +Y+ + V D R F+
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFE 88
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 15/168 (8%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
++ ++GD+ GKS+L+ R+ + K E + M +DG+ I + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTE--SEQYKKEMLVDGQTHLVLIREEAG-- 63
Query: 77 RFRAVTSAYYRGAVGALI-VYDITRRTTFDSISRW---LDELKTHSDTTVARMLVG--NK 130
A + G A+I V+ + +F ++SR L L+ +A LVG ++
Sbjct: 64 ----APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDR 119
Query: 131 CDLESIRNVSTEEGKSL-AEAEGLFFMETSALDSTNVKSAFEIVIREI 177
S R V ++L A+ + + ET A NV F+ V +++
Sbjct: 120 ISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKV 167
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 15/168 (8%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
++ ++GD+ GKS+L+ R+ + K E + M +DG+ I + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTE--SEQYKKEMLVDGQTHLVLIREEAG-- 63
Query: 77 RFRAVTSAYYRGAVGALI-VYDITRRTTFDSISRW---LDELKTHSDTTVARMLVG--NK 130
A + G A+I V+ + +F ++SR L L+ +A LVG ++
Sbjct: 64 ----APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDR 119
Query: 131 CDLESIRNVSTEEGKSL-AEAEGLFFMETSALDSTNVKSAFEIVIREI 177
S R V ++L A+ + + ET A NV F+ V +++
Sbjct: 120 ISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKV 167
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
Length = 166
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
+I+I+G GK+ +L R E + TIG +T + K +K Q+WD G
Sbjct: 5 MRILILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVET----VTYKNLKFQVWDLGGLT 59
Query: 77 RFRAVTSAYYRGAVGALIVYD 97
R YY + V D
Sbjct: 60 SIRPYWRCYYSNTDAVIYVVD 80
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 28 GKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYR 87
GK+ +L ++ + + S T+G F +++E G K IWD GQ+ R+ Y+
Sbjct: 30 GKTTILKKFNGEDVDTIS-PTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFE 84
Query: 88 GAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLV-GNKCDL 133
G + V D R R L L A +L+ NK DL
Sbjct: 85 STDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDL 131
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
Length = 171
Score = 33.9 bits (76), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
+I+I+G GK+ +L R E + TIG +T + K +K Q+WD G
Sbjct: 9 RILILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVETVTY----KNLKFQVWDLGGLTS 63
Query: 78 FRAVTSAYYRGAVGALIVYD 97
R YY + V D
Sbjct: 64 IRPYWRCYYSNTDAVIYVVD 83
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 69 IWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLV- 127
++D +GQ R+R + YY+ + V D + R LD L H D R+ +
Sbjct: 71 VFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPIL 130
Query: 128 --GNKCDL 133
NK DL
Sbjct: 131 FFANKMDL 138
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77
+I+++G GK+ LL + A + + H T G F +S++ G K +WD G +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDIS-HITPTQG--FNIKSVQSQG--FKLNVWDIGGLRK 60
Query: 78 FRAVTSAYYRGAVGALIVYDITRRTTFD 105
R +Y+ + V D R F+
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFE 88
>pdb|3ZYT|A Chain A, Structure Determination Of Esta From Arthrobacter
Nitroguajacolicus Rue61a
Length = 372
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 59/143 (41%), Gaps = 16/143 (11%)
Query: 75 QERFRAVTSA-YYRGAVGALIVYDITRRTTF----DSISRWLDELKTHSDTTVARMLVGN 129
++R RAVT A +Y G L + +R F D W+D +H A VG+
Sbjct: 174 EQRIRAVTGANFYLG----LPESEESRFAQFRWAADPSWPWVDP-ASHFGLA-ANAAVGD 227
Query: 130 KCDLESIRNV---STEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIRE--IYSNVSRK 184
DL +IR V +A AEG+ + +AL KSA ++ E I + + +
Sbjct: 228 ILDLPNIREVRAAGLSSAAGVASAEGMARIYAAALTGLEGKSAMPPLLTEETIRTVSAEQ 287
Query: 185 VLNSDSYKAELSLNRVTLVKSET 207
V D E +KS T
Sbjct: 288 VFGIDRVFGETGCFGTVFMKSHT 310
>pdb|4HHR|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
pdb|4HHS|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
Length = 652
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 107 ISRWLDELK-THSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTN 165
I W+D L+ TH VA V +KC L S R + T+E + G F ++T S N
Sbjct: 174 IHDWIDHLEDTHQIELVAPKEVASKCPLSSFRFLKTKEVPT-----GFFEIKTG---SQN 225
Query: 166 VKSAF 170
+++ +
Sbjct: 226 IRTPW 230
>pdb|2QAG|B Chain B, Crystal Structure Of Human Septin Trimer 267
Length = 427
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEF--NPHSKATIGVEFQTQSMEIDGKEVKAQI 69
+ F I+ +G++ +GKS L+ +F P + GV+ Q+ + ++ V+ ++
Sbjct: 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKL 97
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHS---------KATIGVEFQTQSMEIDGKEVKA 67
F ++++G+S +GKS L++ + P + T+ +E T +E G +++
Sbjct: 6 FTLMVVGESGLGKSTLINSLFLTDLYPERIIPGAAEKIERTVQIEASTVEIEERGVKLRL 65
Query: 68 QIWDTAG 74
+ DT G
Sbjct: 66 TVVDTPG 72
>pdb|3OC4|A Chain A, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
pdb|3OC4|B Chain B, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
Length = 452
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 147 LAEAEGLFFMETSA-----LDSTNVKSAFEIVIREIYSNVSRKVLNS 188
L E EGLFF +T A + ++ EI+ + IY V+++VL +
Sbjct: 339 LTETEGLFFPQTLASIIVRQPAPPLQHGTEILGKLIYDKVTQRVLGA 385
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHS---------KATIGVEFQTQSMEIDGKEV 65
+ F ++++G+S +GKS L++ + P + T+ +E T +E G ++
Sbjct: 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKL 95
Query: 66 KAQIWDTAG 74
+ + DT G
Sbjct: 96 RLTVVDTPG 104
>pdb|3O08|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form I
pdb|3O08|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form I
pdb|3O1B|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Ii
pdb|3O1W|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iii
pdb|3O1W|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iii
pdb|3O4W|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iv
pdb|3O4W|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iv
pdb|3O5B|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Vii
With Glucose Bound (Open State)
pdb|3O5B|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Vii
With Glucose Bound (Open State)
pdb|3O6W|A Chain A, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Viii
(Open State)
pdb|3O6W|B Chain B, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Viii
(Open State)
pdb|3O80|A Chain A, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Ix
(Open State)
pdb|3O8M|A Chain A, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Xi
With Glucose Bound (Closed State)
Length = 485
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 73 AGQERFRAVTSAYYRGAVGALIVYDI 98
GQ+ F +TS YY G + L++ D+
Sbjct: 295 PGQQAFEKMTSGYYLGEIMRLVLLDL 320
>pdb|2NZT|A Chain A, Crystal Structure Of Human Hexokinase Ii
pdb|2NZT|B Chain B, Crystal Structure Of Human Hexokinase Ii
Length = 902
Score = 27.3 bits (59), Expect = 6.2, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 26/106 (24%)
Query: 98 ITRRTTFDSISRWLDELKTHSDTTVARMLVG----------------NKCDLESIRNVST 141
I RR FD LD + +DT M G N C +E +RNV
Sbjct: 627 IHRREEFD-----LDVVAVVNDTVGTMMTCGFEDPHCEVGLIVGTGSNACYMEEMRNVEL 681
Query: 142 ---EEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSNVSRK 184
EEG+ E F + LD + ++ F++ + E+ N ++
Sbjct: 682 VEGEEGRMCVNMEWGAFGDNGCLD--DFRTEFDVAVDELSLNPGKQ 725
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHS---------KATIGVEFQTQSMEIDGKEV 65
+ F + ++G+S +GKS L++ + P + T+ +E T +E G ++
Sbjct: 17 FEFTLXVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKL 76
Query: 66 KAQIWDTAG 74
+ + DT G
Sbjct: 77 RLTVVDTPG 85
>pdb|1TF2|A Chain A, Crystal Structure Of Seca:adp In An Open Conformation From
Bacillus Subtilis
pdb|1TF5|A Chain A, Crystal Structure Of Seca In An Open Conformation From
Bacillus Subtilis
Length = 844
Score = 26.9 bits (58), Expect = 7.9, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 11/57 (19%)
Query: 20 VIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
V++G AV S L+S+ +N+ PH Q + E +AQI + AGQ+
Sbjct: 435 VLVGTVAVETSELISKLLKNKGIPH-----------QVLNAKNHEREAQIIEEAGQK 480
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHS---------KATIGVEFQTQSMEIDGKEV 65
+ F + ++G+S +GKS L++ + P + T+ +E T +E G ++
Sbjct: 36 FEFTLXVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKL 95
Query: 66 KAQIWDTAG 74
+ + DT G
Sbjct: 96 RLTVVDTPG 104
>pdb|3IQY|A Chain A, Active Site Mutants Of B. Subtilis Seca
Length = 841
Score = 26.9 bits (58), Expect = 8.8, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 11/57 (19%)
Query: 20 VIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
V++G AV S L+S+ +N+ PH Q + E +AQI + AGQ+
Sbjct: 432 VLVGTVAVETSELISKLLKNKGIPH-----------QVLNAKNHEREAQIIEEAGQK 477
>pdb|3IQM|A Chain A, Active Site Mutants Of B. Subtilis Seca
Length = 802
Score = 26.9 bits (58), Expect = 8.9, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 11/57 (19%)
Query: 20 VIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
V++G AV S L+S+ +N+ PH Q + E +AQI + AGQ+
Sbjct: 432 VLVGTVAVETSELISKLLKNKGIPH-----------QVLNAKNHEREAQIIEEAGQK 477
>pdb|3JV2|A Chain A, Crystal Structure Of B. Subtilis Seca With Bound Peptide
pdb|3JV2|B Chain B, Crystal Structure Of B. Subtilis Seca With Bound Peptide
Length = 783
Score = 26.9 bits (58), Expect = 8.9, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 11/57 (19%)
Query: 20 VIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
V++G AV S L+S+ +N+ PH Q + E +AQI + AGQ+
Sbjct: 435 VLVGTVAVETSELISKLLKNKGIPH-----------QVLNAKNHEREAQIIEEAGQK 480
>pdb|2IBM|A Chain A, A Novel Dimer Interface And Conformational Changes
Revealed By An X- Ray Structure Of B. Subtilis Seca
pdb|2IBM|B Chain B, A Novel Dimer Interface And Conformational Changes
Revealed By An X- Ray Structure Of B. Subtilis Seca
Length = 780
Score = 26.9 bits (58), Expect = 8.9, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 11/57 (19%)
Query: 20 VIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
V++G AV S L+S+ +N+ PH Q + E +AQI + AGQ+
Sbjct: 432 VLVGTVAVETSELISKLLKNKGIPH-----------QVLNAKNHEREAQIIEEAGQK 477
>pdb|1M6N|A Chain A, Crystal Structure Of The Seca Translocation Atpase From
Bacillus Subtilis
pdb|1M74|A Chain A, Crystal Structure Of Mg-Adp-Bound Seca From Bacillus
Subtilis
Length = 802
Score = 26.9 bits (58), Expect = 8.9, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 11/57 (19%)
Query: 20 VIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
V++G AV S L+S+ +N+ PH Q + E +AQI + AGQ+
Sbjct: 432 VLVGTVAVETSELISKLLKNKGIPH-----------QVLNAKNHEREAQIIEEAGQK 477
>pdb|3DL8|A Chain A, Structure Of The Complex Of Aquifex Aeolicus Secyeg And
Bacillus Subtilis Seca
pdb|3DL8|B Chain B, Structure Of The Complex Of Aquifex Aeolicus Secyeg And
Bacillus Subtilis Seca
Length = 779
Score = 26.9 bits (58), Expect = 9.1, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 11/57 (19%)
Query: 20 VIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76
V++G AV S L+S+ +N+ PH Q + E +AQI + AGQ+
Sbjct: 432 VLVGTVAVETSELISKLLKNKGIPH-----------QVLNAKNHEREAQIIEEAGQK 477
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 17/119 (14%)
Query: 17 FKIVIIGDSAVGKSNLLSRYARNEFNP------HSKATIGVEFQTQSMEIDGKEVKAQIW 70
++V+ G GK+ ++ N+ P H AT+G +T + V ++
Sbjct: 18 LQVVMCGLDNSGKTTII-----NQVKPAQSSSKHITATVGYNVET----FEKGRVAFTVF 68
Query: 71 DTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGN 129
D G ++FR + YY + V D + + + + H D + R L G
Sbjct: 69 DMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHED--IRRELPGG 125
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 116 THSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVI 174
+H DTTV + E + + +E + +GLF++ L T +KSA ++VI
Sbjct: 19 SHMDTTVPTFSLA-----ELQQGLHQDEFRRCLRDKGLFYLTDCGLTDTELKSAKDLVI 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.128 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,197,104
Number of Sequences: 62578
Number of extensions: 176125
Number of successful extensions: 1288
Number of sequences better than 100.0: 367
Number of HSP's better than 100.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 624
Number of HSP's gapped (non-prelim): 369
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)