Query 040481
Match_columns 222
No_of_seqs 121 out of 1659
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 08:53:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040481.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040481hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 2.3E-41 4.9E-46 246.6 21.7 176 11-186 4-180 (205)
2 KOG0078 GTP-binding protein SE 100.0 6.6E-38 1.4E-42 231.6 22.5 172 12-183 8-179 (207)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 3.5E-38 7.5E-43 229.1 18.7 172 14-185 3-174 (200)
4 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.6E-37 3.4E-42 225.8 19.8 173 9-181 15-188 (221)
5 KOG0087 GTPase Rab11/YPT3, sma 100.0 4.1E-37 8.9E-42 226.5 20.6 182 10-191 8-189 (222)
6 KOG0080 GTPase Rab18, small G 100.0 6E-37 1.3E-41 215.9 19.0 170 11-180 6-176 (209)
7 KOG0098 GTPase Rab2, small G p 100.0 9.9E-37 2.1E-41 220.0 20.0 170 13-182 3-172 (216)
8 cd04120 Rab12 Rab12 subfamily. 100.0 3.6E-36 7.8E-41 229.7 24.4 169 17-185 1-170 (202)
9 PLN03110 Rab GTPase; Provision 100.0 6.6E-36 1.4E-40 231.3 25.7 172 12-183 8-179 (216)
10 cd04121 Rab40 Rab40 subfamily. 100.0 8.9E-36 1.9E-40 225.5 23.9 168 13-181 3-170 (189)
11 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 2.4E-35 5.2E-40 226.0 23.6 168 17-184 1-174 (201)
12 KOG0079 GTP-binding protein H- 100.0 2.7E-36 5.8E-41 209.8 14.5 168 13-181 5-172 (198)
13 cd04125 RabA_like RabA-like su 100.0 1.9E-34 4.2E-39 218.7 23.3 165 17-181 1-165 (188)
14 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 3.6E-34 7.9E-39 222.3 25.3 169 12-182 9-192 (232)
15 KOG0091 GTPase Rab39, small G 100.0 3.1E-35 6.8E-40 207.8 16.4 205 13-220 5-213 (213)
16 cd04122 Rab14 Rab14 subfamily. 100.0 3.9E-34 8.5E-39 212.8 22.8 164 16-179 2-165 (166)
17 KOG0394 Ras-related GTPase [Ge 100.0 5.8E-35 1.3E-39 210.4 17.3 172 12-183 5-183 (210)
18 KOG0088 GTPase Rab21, small G 100.0 1.1E-35 2.5E-40 209.0 13.1 212 7-221 4-217 (218)
19 cd01867 Rab8_Rab10_Rab13_like 100.0 4.9E-34 1.1E-38 212.5 22.7 166 14-179 1-166 (167)
20 cd04110 Rab35 Rab35 subfamily. 100.0 8.3E-34 1.8E-38 217.1 24.3 170 14-184 4-173 (199)
21 KOG0095 GTPase Rab30, small G 100.0 3.7E-35 8E-40 204.6 14.8 173 12-184 3-175 (213)
22 cd04144 Ras2 Ras2 subfamily. 100.0 4E-34 8.6E-39 217.3 22.0 165 18-183 1-168 (190)
23 cd04112 Rab26 Rab26 subfamily. 100.0 6.7E-34 1.5E-38 216.3 23.1 165 17-181 1-166 (191)
24 KOG0093 GTPase Rab3, small G p 100.0 1.9E-34 4.2E-39 200.3 17.3 175 8-182 13-187 (193)
25 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 9E-34 1.9E-38 213.5 21.8 163 14-178 3-180 (182)
26 PTZ00369 Ras-like protein; Pro 100.0 1.2E-33 2.6E-38 214.5 22.4 165 15-180 4-169 (189)
27 cd04111 Rab39 Rab39 subfamily. 100.0 3.4E-33 7.3E-38 215.4 24.6 169 16-184 2-172 (211)
28 cd04133 Rop_like Rop subfamily 100.0 1E-33 2.3E-38 212.0 20.9 160 17-178 2-173 (176)
29 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 1.9E-33 4E-38 210.4 21.9 164 16-180 2-166 (172)
30 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 3.1E-33 6.7E-38 207.9 22.8 163 16-178 2-164 (166)
31 cd04126 Rab20 Rab20 subfamily. 100.0 2.2E-33 4.7E-38 216.7 22.5 164 17-185 1-197 (220)
32 cd04109 Rab28 Rab28 subfamily. 100.0 2.6E-33 5.6E-38 216.8 22.9 164 17-180 1-168 (215)
33 cd04117 Rab15 Rab15 subfamily. 100.0 2.1E-33 4.7E-38 207.9 21.5 160 17-176 1-160 (161)
34 PLN03108 Rab family protein; P 100.0 8.4E-33 1.8E-37 213.1 25.5 169 14-182 4-172 (210)
35 PF00071 Ras: Ras family; Int 100.0 3.7E-33 8.1E-38 206.5 22.0 161 18-178 1-161 (162)
36 cd01865 Rab3 Rab3 subfamily. 100.0 5.8E-33 1.3E-37 206.3 23.1 162 17-178 2-163 (165)
37 cd04127 Rab27A Rab27a subfamil 100.0 5E-33 1.1E-37 209.4 22.5 166 15-180 3-179 (180)
38 cd04131 Rnd Rnd subfamily. Th 100.0 4.3E-33 9.2E-38 209.3 21.1 160 17-178 2-176 (178)
39 KOG0086 GTPase Rab4, small G p 100.0 1.3E-33 2.7E-38 197.6 16.7 172 11-182 4-175 (214)
40 cd04119 RJL RJL (RabJ-Like) su 100.0 7E-33 1.5E-37 205.8 21.8 162 17-178 1-167 (168)
41 cd01868 Rab11_like Rab11-like. 100.0 8.5E-33 1.8E-37 205.2 22.1 163 15-177 2-164 (165)
42 cd01875 RhoG RhoG subfamily. 100.0 7.9E-33 1.7E-37 210.3 22.2 162 16-179 3-178 (191)
43 cd01866 Rab2 Rab2 subfamily. 100.0 1.6E-32 3.6E-37 204.5 23.1 166 14-179 2-167 (168)
44 cd04118 Rab24 Rab24 subfamily. 100.0 3.7E-32 8.1E-37 206.9 23.8 164 17-181 1-169 (193)
45 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 2.9E-32 6.4E-37 210.6 23.3 164 17-182 2-180 (222)
46 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.6E-32 3.4E-37 207.0 21.3 163 17-180 1-168 (182)
47 cd01864 Rab19 Rab19 subfamily. 100.0 2.5E-32 5.5E-37 202.8 22.0 162 15-176 2-164 (165)
48 cd01874 Cdc42 Cdc42 subfamily. 100.0 2.8E-32 6.1E-37 204.5 20.8 160 16-177 1-174 (175)
49 PLN03071 GTP-binding nuclear p 100.0 4.9E-32 1.1E-36 210.0 22.7 165 14-181 11-175 (219)
50 cd04113 Rab4 Rab4 subfamily. 100.0 4.1E-32 8.8E-37 200.8 21.2 160 17-176 1-160 (161)
51 PLN03118 Rab family protein; P 100.0 1.8E-31 3.8E-36 206.0 25.4 174 7-181 5-180 (211)
52 cd04136 Rap_like Rap-like subf 100.0 4.5E-32 9.7E-37 200.8 20.9 160 17-177 2-162 (163)
53 smart00175 RAB Rab subfamily o 100.0 1.1E-31 2.3E-36 198.8 22.1 163 17-179 1-163 (164)
54 cd04175 Rap1 Rap1 subgroup. T 100.0 8.5E-32 1.8E-36 199.7 21.1 161 16-177 1-162 (164)
55 cd04132 Rho4_like Rho4-like su 100.0 1.1E-31 2.5E-36 203.3 22.2 165 17-183 1-172 (187)
56 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.8E-31 4E-36 199.2 22.6 162 18-179 2-166 (170)
57 cd04106 Rab23_lke Rab23-like s 100.0 1.2E-31 2.6E-36 198.3 21.2 159 17-176 1-161 (162)
58 cd00877 Ran Ran (Ras-related n 100.0 1.5E-31 3.3E-36 198.9 21.2 160 17-179 1-160 (166)
59 cd04116 Rab9 Rab9 subfamily. 100.0 3.1E-31 6.7E-36 197.8 22.3 163 13-176 2-169 (170)
60 cd04176 Rap2 Rap2 subgroup. T 100.0 2.1E-31 4.6E-36 197.3 21.0 161 16-177 1-162 (163)
61 cd01861 Rab6 Rab6 subfamily. 100.0 3.5E-31 7.6E-36 195.7 21.7 160 17-176 1-160 (161)
62 smart00173 RAS Ras subfamily o 100.0 3E-31 6.4E-36 196.7 20.9 161 17-178 1-162 (164)
63 cd01860 Rab5_related Rab5-rela 100.0 5.9E-31 1.3E-35 194.8 22.5 162 16-177 1-162 (163)
64 cd04115 Rab33B_Rab33A Rab33B/R 100.0 4.1E-31 8.9E-36 197.3 21.7 162 16-177 2-168 (170)
65 cd04124 RabL2 RabL2 subfamily. 100.0 4.1E-31 8.8E-36 195.6 21.4 161 17-181 1-161 (161)
66 cd04140 ARHI_like ARHI subfami 100.0 3.7E-31 7.9E-36 196.6 21.1 158 17-175 2-162 (165)
67 cd01871 Rac1_like Rac1-like su 100.0 2.9E-31 6.3E-36 198.8 20.6 158 17-176 2-173 (174)
68 cd04134 Rho3 Rho3 subfamily. 100.0 2.9E-31 6.3E-36 201.4 20.6 160 18-179 2-175 (189)
69 cd04145 M_R_Ras_like M-Ras/R-R 100.0 5.9E-31 1.3E-35 194.9 21.5 161 16-177 2-163 (164)
70 cd04138 H_N_K_Ras_like H-Ras/N 100.0 8.2E-31 1.8E-35 193.5 21.7 159 17-177 2-161 (162)
71 KOG0081 GTPase Rab27, small G 100.0 4.8E-33 1E-37 195.9 9.0 200 11-210 4-213 (219)
72 cd04142 RRP22 RRP22 subfamily. 100.0 4.7E-31 1E-35 201.4 20.3 165 17-181 1-177 (198)
73 smart00176 RAN Ran (Ras-relate 100.0 1E-30 2.2E-35 199.4 21.0 156 22-180 1-156 (200)
74 cd04101 RabL4 RabL4 (Rab-like4 100.0 1.5E-30 3.4E-35 192.8 21.2 160 17-177 1-163 (164)
75 cd04123 Rab21 Rab21 subfamily. 100.0 1.9E-30 4.2E-35 191.5 21.6 161 17-177 1-161 (162)
76 cd01862 Rab7 Rab7 subfamily. 100.0 4E-30 8.7E-35 191.9 22.2 164 17-180 1-169 (172)
77 cd01873 RhoBTB RhoBTB subfamil 100.0 2.3E-30 5E-35 196.9 19.8 158 16-176 2-194 (195)
78 smart00174 RHO Rho (Ras homolo 100.0 2.5E-30 5.4E-35 193.6 19.6 158 19-178 1-172 (174)
79 KOG0097 GTPase Rab14, small G 100.0 2.6E-30 5.7E-35 178.9 18.0 171 12-182 7-177 (215)
80 cd01892 Miro2 Miro2 subfamily. 100.0 2.8E-30 6E-35 192.7 19.3 163 14-178 2-166 (169)
81 cd01863 Rab18 Rab18 subfamily. 100.0 7.6E-30 1.6E-34 188.5 21.4 159 17-176 1-160 (161)
82 cd04146 RERG_RasL11_like RERG/ 100.0 3.2E-30 7E-35 191.5 19.0 160 18-178 1-164 (165)
83 cd04103 Centaurin_gamma Centau 100.0 4.1E-30 8.9E-35 189.6 19.4 153 17-176 1-157 (158)
84 cd04177 RSR1 RSR1 subgroup. R 100.0 9E-30 1.9E-34 189.7 21.4 162 16-178 1-164 (168)
85 cd04114 Rab30 Rab30 subfamily. 100.0 1.7E-29 3.6E-34 188.2 22.5 164 14-177 5-168 (169)
86 cd04143 Rhes_like Rhes_like su 100.0 6.7E-30 1.5E-34 200.8 21.3 161 17-178 1-171 (247)
87 cd04148 RGK RGK subfamily. Th 100.0 1E-29 2.2E-34 197.3 21.4 164 17-182 1-167 (221)
88 cd00154 Rab Rab family. Rab G 100.0 1.3E-29 2.9E-34 185.9 20.8 158 17-174 1-158 (159)
89 cd04135 Tc10 TC10 subfamily. 100.0 1.1E-29 2.4E-34 190.1 19.8 159 17-177 1-173 (174)
90 cd04130 Wrch_1 Wrch-1 subfamil 100.0 1.6E-29 3.4E-34 189.2 20.0 157 17-175 1-171 (173)
91 cd04139 RalA_RalB RalA/RalB su 100.0 1.8E-28 3.8E-33 181.4 21.3 161 17-178 1-162 (164)
92 cd00876 Ras Ras family. The R 100.0 1.1E-28 2.4E-33 181.7 20.1 158 18-176 1-159 (160)
93 cd04137 RheB Rheb (Ras Homolog 100.0 6E-28 1.3E-32 181.7 21.9 163 17-180 2-165 (180)
94 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 3E-28 6.5E-33 184.0 20.1 165 16-183 3-175 (183)
95 cd04147 Ras_dva Ras-dva subfam 100.0 5.6E-28 1.2E-32 184.7 21.1 160 18-178 1-163 (198)
96 KOG0083 GTPase Rab26/Rab37, sm 100.0 2.8E-30 6E-35 177.0 6.7 163 21-183 2-165 (192)
97 cd04149 Arf6 Arf6 subfamily. 100.0 2.3E-28 5E-33 182.1 17.6 154 15-175 8-167 (168)
98 PLN00223 ADP-ribosylation fact 100.0 3.7E-28 8.1E-33 183.1 18.3 159 14-179 15-179 (181)
99 cd04129 Rho2 Rho2 subfamily. 100.0 9.1E-28 2E-32 181.9 20.5 163 17-181 2-176 (187)
100 cd04158 ARD1 ARD1 subfamily. 100.0 4.9E-28 1.1E-32 180.5 18.6 156 18-180 1-163 (169)
101 cd01870 RhoA_like RhoA-like su 100.0 1.1E-27 2.5E-32 179.3 20.6 159 17-177 2-174 (175)
102 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 6.6E-29 1.4E-33 184.4 13.7 153 18-175 1-163 (164)
103 KOG0395 Ras-related GTPase [Ge 100.0 6.3E-28 1.4E-32 182.8 18.6 166 15-181 2-168 (196)
104 cd00157 Rho Rho (Ras homology) 100.0 1.3E-27 2.9E-32 178.1 19.9 157 17-175 1-170 (171)
105 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1.5E-28 3.2E-33 181.6 14.2 152 17-175 1-158 (159)
106 cd04102 RabL3 RabL3 (Rab-like3 100.0 2.3E-27 5E-32 180.9 20.7 148 17-164 1-176 (202)
107 smart00177 ARF ARF-like small 100.0 1.3E-27 2.8E-32 179.3 19.0 155 16-177 13-173 (175)
108 PTZ00133 ADP-ribosylation fact 100.0 2.6E-27 5.6E-32 178.7 19.3 158 16-180 17-180 (182)
109 cd04154 Arl2 Arl2 subfamily. 100.0 2E-27 4.3E-32 177.9 18.2 157 12-175 10-172 (173)
110 PTZ00132 GTP-binding nuclear p 100.0 9.7E-27 2.1E-31 180.1 22.3 166 12-180 5-170 (215)
111 cd01893 Miro1 Miro1 subfamily. 100.0 3E-27 6.4E-32 175.8 18.7 160 17-179 1-165 (166)
112 KOG4252 GTP-binding protein [S 100.0 3.6E-29 7.8E-34 179.7 5.4 174 11-185 15-188 (246)
113 KOG0393 Ras-related small GTPa 100.0 6.5E-28 1.4E-32 179.3 12.0 165 15-181 3-182 (198)
114 PTZ00099 rab6; Provisional 100.0 2.6E-26 5.6E-31 172.0 19.9 143 39-181 3-145 (176)
115 cd04157 Arl6 Arl6 subfamily. 100.0 7.3E-27 1.6E-31 172.6 16.1 152 18-175 1-161 (162)
116 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 3.9E-26 8.5E-31 171.0 18.0 153 16-175 15-173 (174)
117 PLN00023 GTP-binding protein; 99.9 1E-25 2.2E-30 180.1 20.4 145 9-153 14-189 (334)
118 cd04161 Arl2l1_Arl13_like Arl2 99.9 3.8E-26 8.2E-31 170.0 16.1 151 18-175 1-166 (167)
119 cd04156 ARLTS1 ARLTS1 subfamil 99.9 3.6E-26 7.7E-31 168.7 15.7 152 18-175 1-159 (160)
120 cd00879 Sar1 Sar1 subfamily. 99.9 7.8E-26 1.7E-30 171.6 17.8 155 15-176 18-189 (190)
121 cd04160 Arfrp1 Arfrp1 subfamil 99.9 8.2E-26 1.8E-30 167.9 17.1 152 18-175 1-166 (167)
122 cd00878 Arf_Arl Arf (ADP-ribos 99.9 4.1E-26 9E-31 168.1 15.2 151 18-175 1-157 (158)
123 cd04151 Arl1 Arl1 subfamily. 99.9 2E-26 4.4E-31 169.8 13.5 151 18-175 1-157 (158)
124 PF00025 Arf: ADP-ribosylation 99.9 2.1E-25 4.5E-30 167.2 16.4 157 14-177 12-175 (175)
125 smart00178 SAR Sar1p-like memb 99.9 6.3E-25 1.4E-29 165.9 17.6 156 14-176 15-183 (184)
126 KOG0073 GTP-binding ADP-ribosy 99.9 1.4E-24 3E-29 154.0 17.7 162 13-181 13-181 (185)
127 cd01897 NOG NOG1 is a nucleola 99.9 6.7E-25 1.5E-29 163.1 16.3 156 17-177 1-167 (168)
128 cd04159 Arl10_like Arl10-like 99.9 9E-25 2E-29 160.2 16.2 151 19-175 2-158 (159)
129 cd01898 Obg Obg subfamily. Th 99.9 8.2E-25 1.8E-29 162.9 15.4 157 18-176 2-169 (170)
130 TIGR00231 small_GTP small GTP- 99.9 6.1E-24 1.3E-28 155.4 18.8 157 16-173 1-159 (161)
131 cd01890 LepA LepA subfamily. 99.9 2.8E-24 6.1E-29 161.4 17.4 154 18-177 2-176 (179)
132 cd01878 HflX HflX subfamily. 99.9 1.5E-24 3.3E-29 166.4 15.6 156 14-176 39-203 (204)
133 PRK12299 obgE GTPase CgtA; Rev 99.9 5.9E-24 1.3E-28 173.4 18.8 162 18-180 160-330 (335)
134 cd04155 Arl3 Arl3 subfamily. 99.9 1.3E-23 2.8E-28 157.0 18.3 152 14-175 12-172 (173)
135 cd04171 SelB SelB subfamily. 99.9 2.5E-23 5.4E-28 153.8 16.4 151 18-175 2-163 (164)
136 TIGR02528 EutP ethanolamine ut 99.9 8.2E-24 1.8E-28 153.2 13.1 134 18-174 2-141 (142)
137 COG1100 GTPase SAR1 and relate 99.9 1.2E-22 2.6E-27 157.4 20.4 168 16-183 5-190 (219)
138 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 4.6E-23 1E-27 153.1 15.1 157 18-178 2-166 (168)
139 cd00882 Ras_like_GTPase Ras-li 99.9 2.9E-22 6.3E-27 145.1 17.9 153 21-174 1-156 (157)
140 cd01879 FeoB Ferrous iron tran 99.9 1.9E-22 4E-27 148.3 16.6 147 21-176 1-155 (158)
141 PF02421 FeoB_N: Ferrous iron 99.9 2.7E-23 5.9E-28 150.8 11.6 148 17-173 1-156 (156)
142 TIGR02729 Obg_CgtA Obg family 99.9 2.1E-22 4.4E-27 164.3 18.0 159 17-177 158-328 (329)
143 PRK04213 GTP-binding protein; 99.9 3.3E-23 7.2E-28 158.6 11.0 153 14-179 7-193 (201)
144 TIGR03156 GTP_HflX GTP-binding 99.9 4E-22 8.6E-27 163.9 17.5 154 15-176 188-350 (351)
145 KOG1673 Ras GTPases [General f 99.9 4.7E-23 1E-27 144.9 10.3 168 12-180 16-188 (205)
146 cd01891 TypA_BipA TypA (tyrosi 99.9 1.1E-22 2.3E-27 155.0 13.1 149 17-169 3-173 (194)
147 KOG0070 GTP-binding ADP-ribosy 99.9 1.5E-22 3.2E-27 147.1 12.3 160 13-179 14-179 (181)
148 cd01881 Obg_like The Obg-like 99.9 4.1E-22 8.8E-27 149.0 13.4 155 21-176 1-175 (176)
149 TIGR00436 era GTP-binding prot 99.9 1.1E-21 2.5E-26 156.6 16.2 153 18-178 2-164 (270)
150 PF08477 Miro: Miro-like prote 99.9 7.8E-22 1.7E-26 138.5 13.5 114 18-132 1-119 (119)
151 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1.5E-21 3.3E-26 143.0 15.4 146 17-177 2-156 (157)
152 PRK03003 GTP-binding protein D 99.9 1.3E-21 2.9E-26 167.4 15.3 168 15-189 210-392 (472)
153 cd00881 GTP_translation_factor 99.9 2.6E-21 5.6E-26 146.2 15.1 156 18-177 1-186 (189)
154 KOG3883 Ras family small GTPas 99.9 6.5E-21 1.4E-25 133.9 15.6 165 16-181 9-178 (198)
155 PRK12297 obgE GTPase CgtA; Rev 99.9 1E-20 2.3E-25 158.1 19.8 159 18-181 160-330 (424)
156 PRK15467 ethanolamine utilizat 99.9 3E-21 6.5E-26 142.3 14.5 143 18-182 3-151 (158)
157 TIGR00450 mnmE_trmE_thdF tRNA 99.9 8.2E-21 1.8E-25 160.4 18.8 155 13-181 200-363 (442)
158 cd01889 SelB_euk SelB subfamil 99.9 2.3E-21 5E-26 147.4 14.1 158 17-178 1-186 (192)
159 KOG0075 GTP-binding ADP-ribosy 99.9 1.3E-21 2.8E-26 136.4 11.3 158 16-179 20-183 (186)
160 TIGR00487 IF-2 translation ini 99.9 6.7E-21 1.4E-25 165.5 18.4 156 12-175 83-247 (587)
161 PRK15494 era GTPase Era; Provi 99.9 5.9E-21 1.3E-25 156.7 16.6 156 14-179 50-217 (339)
162 TIGR01393 lepA GTP-binding pro 99.9 1.1E-20 2.5E-25 164.7 18.5 157 16-178 3-180 (595)
163 cd01894 EngA1 EngA1 subfamily. 99.9 5.6E-21 1.2E-25 140.1 14.0 146 20-176 1-156 (157)
164 PRK11058 GTPase HflX; Provisio 99.9 1.3E-20 2.8E-25 158.4 17.9 158 17-180 198-364 (426)
165 TIGR03594 GTPase_EngA ribosome 99.9 1.3E-20 2.8E-25 160.0 17.8 167 14-188 170-353 (429)
166 PRK12296 obgE GTPase CgtA; Rev 99.9 1.4E-20 3.1E-25 159.3 17.6 162 17-181 160-343 (500)
167 PRK05291 trmE tRNA modificatio 99.9 1.1E-20 2.4E-25 160.3 16.6 149 15-179 214-371 (449)
168 PRK03003 GTP-binding protein D 99.9 1E-20 2.2E-25 162.0 16.5 155 15-179 37-200 (472)
169 cd01888 eIF2_gamma eIF2-gamma 99.9 8.7E-21 1.9E-25 145.4 14.3 159 17-177 1-198 (203)
170 KOG0071 GTP-binding ADP-ribosy 99.9 3.1E-20 6.8E-25 128.6 14.6 155 16-177 17-177 (180)
171 PRK12298 obgE GTPase CgtA; Rev 99.9 5.3E-20 1.2E-24 153.0 18.1 161 18-180 161-335 (390)
172 cd04163 Era Era subfamily. Er 99.9 4.6E-20 1E-24 136.1 15.9 156 16-176 3-167 (168)
173 CHL00189 infB translation init 99.9 3.2E-20 6.9E-25 163.7 17.0 157 13-176 241-408 (742)
174 PRK05306 infB translation init 99.9 5.4E-20 1.2E-24 163.5 18.4 156 12-176 286-450 (787)
175 TIGR00475 selB selenocysteine- 99.9 2.9E-20 6.3E-25 162.1 16.3 153 17-178 1-166 (581)
176 PRK00454 engB GTP-binding prot 99.8 4.2E-20 9.2E-25 140.7 15.2 160 12-178 20-194 (196)
177 PRK00089 era GTPase Era; Revie 99.8 5.6E-20 1.2E-24 148.6 16.5 158 16-178 5-171 (292)
178 cd01895 EngA2 EngA2 subfamily. 99.8 1.3E-19 2.7E-24 134.8 16.6 154 16-175 2-172 (174)
179 TIGR03598 GTPase_YsxC ribosome 99.8 3.6E-20 7.9E-25 139.3 13.3 149 12-167 14-179 (179)
180 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 1.1E-20 2.3E-25 137.4 9.2 163 14-179 8-170 (216)
181 PF00009 GTP_EFTU: Elongation 99.8 1.2E-20 2.5E-25 143.1 10.0 159 15-177 2-186 (188)
182 PRK00093 GTP-binding protein D 99.8 1.7E-19 3.6E-24 153.5 17.4 146 17-175 2-159 (435)
183 TIGR00437 feoB ferrous iron tr 99.8 1.7E-19 3.6E-24 157.5 16.0 146 23-177 1-154 (591)
184 COG1159 Era GTPase [General fu 99.8 2.1E-19 4.7E-24 140.4 14.2 160 15-179 5-173 (298)
185 cd00880 Era_like Era (E. coli 99.8 1.8E-19 3.9E-24 131.7 13.0 151 21-176 1-162 (163)
186 KOG0076 GTP-binding ADP-ribosy 99.8 6.2E-20 1.3E-24 131.7 9.7 160 15-180 16-189 (197)
187 PRK00093 GTP-binding protein D 99.8 2.4E-19 5.3E-24 152.5 14.4 166 14-187 171-352 (435)
188 PRK05433 GTP-binding protein L 99.8 8.6E-19 1.9E-23 153.2 18.0 159 15-179 6-185 (600)
189 KOG0074 GTP-binding ADP-ribosy 99.8 2E-19 4.3E-24 124.8 10.9 160 10-175 11-176 (185)
190 TIGR03594 GTPase_EngA ribosome 99.8 6.6E-19 1.4E-23 149.6 16.4 150 18-178 1-160 (429)
191 PRK09518 bifunctional cytidyla 99.8 1.5E-18 3.3E-23 155.1 18.4 165 15-188 449-630 (712)
192 COG2229 Predicted GTPase [Gene 99.8 5.1E-18 1.1E-22 123.4 17.4 159 12-176 6-176 (187)
193 PRK09554 feoB ferrous iron tra 99.8 1.9E-18 4.1E-23 154.3 17.5 153 16-177 3-167 (772)
194 TIGR00491 aIF-2 translation in 99.8 1.7E-18 3.6E-23 150.4 16.7 157 16-179 4-217 (590)
195 COG1160 Predicted GTPases [Gen 99.8 1.1E-18 2.3E-23 143.6 14.1 170 15-191 177-363 (444)
196 cd04105 SR_beta Signal recogni 99.8 2.4E-18 5.3E-23 131.8 14.8 117 18-135 2-123 (203)
197 PRK09518 bifunctional cytidyla 99.8 2.5E-18 5.4E-23 153.7 16.6 156 14-179 273-437 (712)
198 COG1160 Predicted GTPases [Gen 99.8 1.5E-18 3.3E-23 142.7 13.9 151 17-177 4-164 (444)
199 PRK12317 elongation factor 1-a 99.8 1.1E-18 2.4E-23 147.8 12.9 157 13-171 3-198 (425)
200 TIGR00483 EF-1_alpha translati 99.8 1.8E-18 4E-23 146.5 13.8 156 13-170 4-199 (426)
201 cd01896 DRG The developmentall 99.8 2.8E-17 6E-22 128.4 18.7 151 18-177 2-225 (233)
202 KOG4423 GTP-binding protein-li 99.8 5E-21 1.1E-25 138.7 -2.4 175 13-187 22-203 (229)
203 TIGR03680 eif2g_arch translati 99.8 4E-18 8.7E-23 143.4 14.4 162 14-177 2-195 (406)
204 COG0486 ThdF Predicted GTPase 99.8 9.9E-18 2.2E-22 138.3 16.3 155 14-180 215-378 (454)
205 cd01884 EF_Tu EF-Tu subfamily. 99.8 9.9E-18 2.1E-22 127.4 15.2 148 16-167 2-172 (195)
206 cd01876 YihA_EngB The YihA (En 99.8 8.6E-18 1.9E-22 124.2 14.5 150 18-176 1-169 (170)
207 PRK10512 selenocysteinyl-tRNA- 99.8 7.8E-18 1.7E-22 147.4 16.2 155 18-177 2-165 (614)
208 cd04166 CysN_ATPS CysN_ATPS su 99.8 3.7E-18 8.1E-23 131.3 12.2 149 18-169 1-185 (208)
209 PRK10218 GTP-binding protein; 99.8 2.6E-17 5.6E-22 143.5 18.0 159 16-178 5-195 (607)
210 PRK04004 translation initiatio 99.8 3.5E-17 7.6E-22 142.6 18.4 157 14-177 4-217 (586)
211 PF10662 PduV-EutP: Ethanolami 99.8 1.8E-17 3.9E-22 117.9 13.5 135 18-174 3-142 (143)
212 TIGR01394 TypA_BipA GTP-bindin 99.8 1.3E-17 2.8E-22 145.4 15.5 157 18-178 3-191 (594)
213 PRK04000 translation initiatio 99.8 1.2E-17 2.6E-22 140.5 14.3 163 13-177 6-200 (411)
214 KOG0072 GTP-binding ADP-ribosy 99.8 1.9E-18 4.2E-23 120.3 6.6 159 14-179 16-180 (182)
215 PRK12736 elongation factor Tu; 99.7 4.9E-17 1.1E-21 136.3 14.8 148 13-164 9-179 (394)
216 KOG1707 Predicted Ras related/ 99.7 1.2E-17 2.5E-22 140.2 10.7 166 13-180 6-177 (625)
217 cd04168 TetM_like Tet(M)-like 99.7 8.1E-17 1.8E-21 126.0 14.3 113 18-134 1-129 (237)
218 cd04167 Snu114p Snu114p subfam 99.7 6E-17 1.3E-21 125.1 13.3 113 18-134 2-136 (213)
219 cd01883 EF1_alpha Eukaryotic e 99.7 2E-17 4.4E-22 128.2 10.5 149 18-168 1-195 (219)
220 PRK12735 elongation factor Tu; 99.7 7.5E-17 1.6E-21 135.3 14.6 149 13-165 9-180 (396)
221 COG0370 FeoB Fe2+ transport sy 99.7 7E-17 1.5E-21 138.6 14.5 154 16-178 3-164 (653)
222 COG1084 Predicted GTPase [Gene 99.7 2E-16 4.2E-21 125.1 15.0 159 15-178 167-336 (346)
223 TIGR00485 EF-Tu translation el 99.7 1.1E-16 2.5E-21 134.2 14.2 156 11-170 7-186 (394)
224 KOG1489 Predicted GTP-binding 99.7 1.8E-16 3.8E-21 124.5 13.7 154 18-175 198-364 (366)
225 cd04165 GTPBP1_like GTPBP1-lik 99.7 3.1E-16 6.6E-21 121.7 14.2 153 18-174 1-219 (224)
226 CHL00071 tufA elongation facto 99.7 4.3E-16 9.4E-21 131.2 15.3 150 13-166 9-181 (409)
227 COG0218 Predicted GTPase [Gene 99.7 7.4E-16 1.6E-20 114.6 14.2 161 11-178 19-197 (200)
228 KOG1423 Ras-like GTPase ERA [C 99.7 1.5E-15 3.2E-20 118.8 15.5 161 12-177 68-270 (379)
229 cd04169 RF3 RF3 subfamily. Pe 99.7 1.2E-15 2.7E-20 121.3 15.4 115 17-135 3-137 (267)
230 cd01885 EF2 EF2 (for archaea a 99.7 4.2E-16 9.1E-21 120.5 12.3 113 18-134 2-138 (222)
231 COG0532 InfB Translation initi 99.7 2.1E-15 4.6E-20 126.3 17.0 155 15-176 4-168 (509)
232 COG2262 HflX GTPases [General 99.7 2.2E-15 4.8E-20 122.5 15.8 162 13-181 189-359 (411)
233 cd04104 p47_IIGP_like p47 (47- 99.7 2.9E-15 6.2E-20 114.3 15.1 159 17-183 2-189 (197)
234 PRK00049 elongation factor Tu; 99.7 2.2E-15 4.8E-20 126.4 15.4 149 12-164 8-179 (396)
235 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 5E-16 1.1E-20 120.1 10.4 162 18-182 1-180 (232)
236 cd01850 CDC_Septin CDC/Septin. 99.7 3.5E-15 7.5E-20 119.3 14.8 143 15-162 3-186 (276)
237 cd01886 EF-G Elongation factor 99.7 9.7E-16 2.1E-20 122.0 11.3 114 18-135 1-130 (270)
238 PLN00043 elongation factor 1-a 99.7 1.9E-15 4E-20 128.2 13.6 152 13-168 4-203 (447)
239 PRK05124 cysN sulfate adenylyl 99.7 2.3E-15 4.9E-20 128.7 14.2 154 13-169 24-216 (474)
240 PLN03127 Elongation factor Tu; 99.7 3.6E-15 7.9E-20 126.4 15.2 160 12-175 57-249 (447)
241 PLN03126 Elongation factor Tu; 99.7 2.2E-15 4.8E-20 128.4 13.8 151 12-166 77-250 (478)
242 COG0536 Obg Predicted GTPase [ 99.7 3.3E-15 7.2E-20 118.7 13.5 163 18-181 161-336 (369)
243 PTZ00141 elongation factor 1- 99.6 3.2E-15 7E-20 126.8 14.1 153 13-168 4-203 (446)
244 TIGR02034 CysN sulfate adenyly 99.6 2.9E-15 6.3E-20 126.1 13.6 150 17-169 1-188 (406)
245 cd04170 EF-G_bact Elongation f 99.6 2.6E-15 5.6E-20 119.9 12.6 145 18-170 1-165 (268)
246 PTZ00327 eukaryotic translatio 99.6 3.4E-15 7.4E-20 126.5 13.5 164 12-177 30-232 (460)
247 cd01899 Ygr210 Ygr210 subfamil 99.6 1.5E-14 3.2E-19 117.4 14.6 81 19-99 1-110 (318)
248 PF01926 MMR_HSR1: 50S ribosom 99.6 2.8E-14 6.1E-19 99.6 14.1 106 18-130 1-116 (116)
249 KOG1145 Mitochondrial translat 99.6 2.5E-14 5.4E-19 119.6 15.2 154 14-175 151-313 (683)
250 PRK05506 bifunctional sulfate 99.6 1.2E-14 2.6E-19 128.7 13.6 154 12-168 20-211 (632)
251 KOG0462 Elongation factor-type 99.6 1.4E-14 2.9E-19 121.2 12.8 164 12-179 56-236 (650)
252 PRK13351 elongation factor G; 99.6 1.9E-14 4.1E-19 128.8 14.7 119 13-135 5-139 (687)
253 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 4.3E-14 9.3E-19 107.8 14.6 159 17-179 1-185 (196)
254 COG1163 DRG Predicted GTPase [ 99.6 7.4E-14 1.6E-18 110.3 14.8 157 12-177 59-288 (365)
255 PF09439 SRPRB: Signal recogni 99.6 6.5E-15 1.4E-19 109.4 7.5 114 17-134 4-125 (181)
256 PRK12739 elongation factor G; 99.6 1E-13 2.2E-18 123.9 15.3 117 13-135 5-139 (691)
257 KOG1490 GTP-binding protein CR 99.6 2.6E-14 5.7E-19 118.4 10.4 187 14-206 166-368 (620)
258 KOG1191 Mitochondrial GTPase [ 99.6 3.1E-14 6.7E-19 117.9 10.8 165 14-180 266-452 (531)
259 PRK09866 hypothetical protein; 99.6 3.6E-13 7.7E-18 115.9 17.4 108 66-175 231-350 (741)
260 COG5256 TEF1 Translation elong 99.6 6E-14 1.3E-18 114.2 12.0 156 13-169 4-202 (428)
261 PRK00741 prfC peptide chain re 99.6 1.2E-13 2.5E-18 119.3 14.5 117 15-135 9-145 (526)
262 KOG0077 Vesicle coat complex C 99.6 2.9E-14 6.3E-19 101.9 8.7 153 17-176 21-191 (193)
263 COG0481 LepA Membrane GTPase L 99.5 1.6E-13 3.4E-18 113.2 13.9 162 13-180 6-188 (603)
264 KOG3905 Dynein light intermedi 99.5 1.3E-13 2.8E-18 108.9 12.9 160 17-179 53-291 (473)
265 COG4917 EutP Ethanolamine util 99.5 6.2E-14 1.3E-18 95.7 9.4 136 18-175 3-143 (148)
266 TIGR00484 EF-G translation elo 99.5 1.5E-13 3.2E-18 122.9 14.0 117 13-135 7-141 (689)
267 PRK09602 translation-associate 99.5 3.8E-13 8.2E-18 112.3 15.1 83 17-99 2-113 (396)
268 TIGR00503 prfC peptide chain r 99.5 2.4E-13 5.3E-18 117.4 14.0 118 14-135 9-146 (527)
269 COG3596 Predicted GTPase [Gene 99.5 2.4E-13 5.3E-18 105.4 11.8 161 14-178 37-222 (296)
270 PF05783 DLIC: Dynein light in 99.5 8.5E-13 1.8E-17 111.8 14.2 162 16-180 25-266 (472)
271 PRK00007 elongation factor G; 99.5 5.7E-13 1.2E-17 119.1 13.7 117 13-135 7-141 (693)
272 PRK12740 elongation factor G; 99.5 1.4E-12 3E-17 116.6 14.3 107 22-134 1-125 (668)
273 PRK14845 translation initiatio 99.4 2.4E-12 5.3E-17 117.6 15.1 143 28-177 473-672 (1049)
274 KOG0090 Signal recognition par 99.4 2.1E-12 4.6E-17 96.3 11.9 113 17-134 39-158 (238)
275 PTZ00258 GTP-binding protein; 99.4 4.1E-12 9E-17 105.2 14.3 86 14-99 19-126 (390)
276 TIGR00490 aEF-2 translation el 99.4 9.7E-13 2.1E-17 118.0 10.4 117 14-134 17-151 (720)
277 cd01853 Toc34_like Toc34-like 99.4 5.7E-12 1.2E-16 99.2 13.2 122 11-135 26-163 (249)
278 COG2895 CysN GTPases - Sulfate 99.4 4.2E-12 9E-17 101.5 12.1 153 13-168 3-193 (431)
279 TIGR00101 ureG urease accessor 99.4 8E-12 1.7E-16 95.3 13.3 103 65-178 92-196 (199)
280 TIGR00991 3a0901s02IAP34 GTP-b 99.4 9E-12 2E-16 99.7 13.9 126 13-140 35-172 (313)
281 KOG1707 Predicted Ras related/ 99.4 8.9E-12 1.9E-16 105.2 14.3 166 11-181 420-586 (625)
282 PF04548 AIG1: AIG1 family; I 99.4 5.7E-12 1.2E-16 97.2 11.7 161 17-181 1-189 (212)
283 TIGR00157 ribosome small subun 99.4 2.2E-12 4.8E-17 101.5 9.0 96 76-175 24-120 (245)
284 cd00066 G-alpha G protein alph 99.4 4.8E-11 1E-15 97.4 16.3 117 64-180 160-313 (317)
285 smart00010 small_GTPase Small 99.4 9.8E-12 2.1E-16 87.3 10.7 114 17-167 1-115 (124)
286 PRK09601 GTP-binding protein Y 99.4 6.1E-11 1.3E-15 97.3 16.4 83 17-99 3-107 (364)
287 cd01882 BMS1 Bms1. Bms1 is an 99.3 2.7E-11 5.8E-16 94.3 12.4 142 13-166 36-184 (225)
288 COG5257 GCD11 Translation init 99.3 5.6E-12 1.2E-16 99.6 7.8 163 14-178 8-202 (415)
289 KOG3886 GTP-binding protein [S 99.3 2.8E-12 6E-17 96.9 5.9 147 16-164 4-165 (295)
290 PLN00116 translation elongatio 99.3 7.7E-12 1.7E-16 113.9 9.9 118 13-134 16-163 (843)
291 PRK13768 GTPase; Provisional 99.3 1.5E-11 3.3E-16 97.3 10.2 113 66-178 98-247 (253)
292 COG1217 TypA Predicted membran 99.3 2.4E-11 5.2E-16 100.3 11.4 160 17-180 6-197 (603)
293 KOG0705 GTPase-activating prot 99.3 1.1E-11 2.3E-16 104.0 9.5 171 5-182 19-193 (749)
294 KOG1144 Translation initiation 99.3 2.1E-11 4.5E-16 105.4 11.4 162 13-185 472-694 (1064)
295 PTZ00416 elongation factor 2; 99.3 1.1E-11 2.4E-16 112.7 10.3 118 13-134 16-157 (836)
296 smart00275 G_alpha G protein a 99.3 3.2E-10 6.9E-15 93.4 17.8 116 65-180 184-336 (342)
297 PRK07560 elongation factor EF- 99.3 4.6E-11 1E-15 107.6 13.9 118 13-134 17-152 (731)
298 TIGR00073 hypB hydrogenase acc 99.3 4.5E-11 9.6E-16 91.9 11.4 149 14-176 20-205 (207)
299 cd01900 YchF YchF subfamily. 99.3 8.5E-11 1.8E-15 93.4 12.8 81 19-99 1-103 (274)
300 KOG0461 Selenocysteine-specifi 99.3 1.4E-10 3.1E-15 92.6 13.5 153 14-171 5-186 (522)
301 PRK09435 membrane ATPase/prote 99.3 8.1E-11 1.8E-15 95.9 12.4 104 64-178 148-260 (332)
302 KOG0458 Elongation factor 1 al 99.3 2.8E-11 6.1E-16 102.3 9.8 158 11-169 172-373 (603)
303 COG0012 Predicted GTPase, prob 99.2 4.4E-10 9.5E-15 91.2 15.2 85 16-100 2-109 (372)
304 KOG1532 GTPase XAB1, interacts 99.2 2.2E-11 4.7E-16 94.4 6.7 173 10-182 13-268 (366)
305 PF00350 Dynamin_N: Dynamin fa 99.2 2E-10 4.3E-15 85.2 11.7 63 66-131 102-168 (168)
306 PF03029 ATP_bind_1: Conserved 99.2 1.8E-11 3.8E-16 95.8 6.0 110 66-175 92-234 (238)
307 COG3276 SelB Selenocysteine-sp 99.2 1.9E-10 4E-15 94.7 11.4 155 18-178 2-162 (447)
308 COG0378 HypB Ni2+-binding GTPa 99.2 2.5E-10 5.4E-15 84.6 10.4 150 16-177 13-200 (202)
309 TIGR02836 spore_IV_A stage IV 99.2 1.7E-09 3.6E-14 89.3 16.1 143 15-162 16-219 (492)
310 TIGR00993 3a0901s04IAP86 chlor 99.2 4.5E-10 9.7E-15 97.4 13.0 124 10-135 112-250 (763)
311 PF05049 IIGP: Interferon-indu 99.2 9.3E-11 2E-15 96.3 8.3 162 15-183 34-223 (376)
312 KOG0468 U5 snRNP-specific prot 99.1 4.5E-10 9.8E-15 96.4 11.1 119 11-133 123-261 (971)
313 COG0050 TufB GTPases - transla 99.1 4.7E-10 1E-14 87.9 10.2 172 12-188 8-203 (394)
314 TIGR00750 lao LAO/AO transport 99.1 6.9E-10 1.5E-14 90.0 10.8 103 64-177 126-237 (300)
315 COG0480 FusA Translation elong 99.1 4.5E-10 9.8E-15 99.4 10.4 118 13-134 7-141 (697)
316 PF00735 Septin: Septin; Inte 99.1 1.8E-09 3.9E-14 86.5 12.2 142 15-160 3-183 (281)
317 KOG0082 G-protein alpha subuni 99.1 1.6E-08 3.5E-13 82.2 16.7 129 52-182 184-348 (354)
318 smart00053 DYNc Dynamin, GTPas 99.1 3.1E-09 6.6E-14 83.0 11.9 68 65-135 125-206 (240)
319 PRK10463 hydrogenase nickel in 99.0 4.3E-10 9.3E-15 89.5 5.0 55 122-176 231-287 (290)
320 KOG1954 Endocytosis/signaling 99.0 6.7E-09 1.4E-13 83.9 10.9 126 10-138 52-228 (532)
321 COG4108 PrfC Peptide chain rel 99.0 8.2E-09 1.8E-13 85.1 11.6 131 18-154 14-164 (528)
322 PF03308 ArgK: ArgK protein; 99.0 5.8E-10 1.3E-14 86.6 4.5 150 15-176 28-228 (266)
323 COG1703 ArgK Putative periplas 98.9 1.2E-08 2.6E-13 80.5 11.1 154 15-179 50-255 (323)
324 cd01855 YqeH YqeH. YqeH is an 98.9 8.9E-09 1.9E-13 78.0 9.8 96 76-178 22-125 (190)
325 cd01859 MJ1464 MJ1464. This f 98.9 4.5E-09 9.8E-14 77.1 7.1 94 79-178 3-96 (156)
326 PRK12289 GTPase RsgA; Reviewed 98.9 1.9E-08 4.1E-13 83.0 10.6 91 81-176 82-173 (352)
327 KOG0410 Predicted GTP binding 98.9 4.4E-09 9.5E-14 83.6 6.4 155 14-180 176-343 (410)
328 cd01854 YjeQ_engC YjeQ/EngC. 98.8 1.7E-08 3.7E-13 81.4 9.0 88 83-175 73-161 (287)
329 COG5019 CDC3 Septin family pro 98.8 1.2E-07 2.6E-12 76.9 13.5 139 14-157 21-200 (373)
330 KOG3887 Predicted small GTPase 98.8 3.2E-08 6.9E-13 75.7 9.5 164 16-182 27-206 (347)
331 KOG1486 GTP-binding protein DR 98.8 2.6E-07 5.6E-12 71.3 14.1 90 12-103 58-154 (364)
332 PF00503 G-alpha: G-protein al 98.8 3.4E-07 7.3E-12 77.1 15.5 124 52-176 224-388 (389)
333 PRK12288 GTPase RsgA; Reviewed 98.8 5.4E-08 1.2E-12 80.2 10.1 88 86-176 118-206 (347)
334 KOG2655 Septin family protein 98.8 1.8E-07 3.9E-12 76.3 12.4 162 14-182 19-218 (366)
335 PRK00098 GTPase RsgA; Reviewed 98.8 3.7E-08 8.1E-13 79.8 8.6 87 85-175 77-164 (298)
336 COG5258 GTPBP1 GTPase [General 98.7 1.4E-07 2.9E-12 76.9 11.0 156 12-171 113-332 (527)
337 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 3.1E-08 6.6E-13 71.5 6.4 54 18-75 85-138 (141)
338 TIGR03348 VI_IcmF type VI secr 98.7 2.2E-07 4.7E-12 87.9 12.6 112 19-135 114-257 (1169)
339 TIGR00092 GTP-binding protein 98.7 1.3E-07 2.9E-12 77.9 8.9 83 17-99 3-108 (368)
340 cd01858 NGP_1 NGP-1. Autoanti 98.7 8.9E-08 1.9E-12 70.3 7.2 56 15-74 101-156 (157)
341 cd04178 Nucleostemin_like Nucl 98.7 8.5E-08 1.8E-12 71.4 6.9 57 14-74 115-171 (172)
342 TIGR03597 GTPase_YqeH ribosome 98.6 1.9E-07 4E-12 77.7 9.5 95 75-176 50-151 (360)
343 KOG1491 Predicted GTP-binding 98.6 2.1E-07 4.5E-12 74.6 8.2 89 12-100 16-126 (391)
344 KOG2486 Predicted GTPase [Gene 98.6 1.1E-07 2.3E-12 74.3 6.4 159 10-175 130-313 (320)
345 KOG0460 Mitochondrial translat 98.6 1.7E-07 3.6E-12 75.2 7.6 150 11-163 49-223 (449)
346 cd01858 NGP_1 NGP-1. Autoanti 98.6 1.7E-07 3.8E-12 68.7 7.3 90 85-177 5-94 (157)
347 KOG1547 Septin CDC10 and relat 98.6 1.1E-06 2.4E-11 67.4 11.6 146 14-164 44-229 (336)
348 KOG0466 Translation initiation 98.6 3.5E-08 7.6E-13 78.0 2.9 160 13-178 35-241 (466)
349 cd01856 YlqF YlqF. Proteins o 98.6 2.3E-07 4.9E-12 69.2 6.7 58 14-75 113-170 (171)
350 cd01855 YqeH YqeH. YqeH is an 98.5 1.8E-07 3.8E-12 70.9 6.0 55 17-74 128-189 (190)
351 KOG0467 Translation elongation 98.5 2.6E-07 5.7E-12 80.8 7.5 117 12-132 5-135 (887)
352 KOG0448 Mitofusin 1 GTPase, in 98.5 2.6E-06 5.6E-11 74.0 13.2 118 14-135 107-275 (749)
353 cd01859 MJ1464 MJ1464. This f 98.5 4.1E-07 9E-12 66.6 7.0 56 15-74 100-155 (156)
354 COG5192 BMS1 GTP-binding prote 98.5 4E-06 8.6E-11 71.7 13.5 153 11-175 64-224 (1077)
355 KOG0464 Elongation factor G [T 98.5 2.2E-07 4.8E-12 76.4 5.4 115 17-135 38-168 (753)
356 PRK09563 rbgA GTPase YlqF; Rev 98.5 6.6E-07 1.4E-11 72.2 8.2 58 14-76 119-177 (287)
357 cd01849 YlqF_related_GTPase Yl 98.5 8.6E-07 1.9E-11 64.9 8.1 84 90-177 1-84 (155)
358 TIGR03596 GTPase_YlqF ribosome 98.5 5.3E-07 1.1E-11 72.4 7.3 58 14-75 116-173 (276)
359 PRK10416 signal recognition pa 98.5 1.7E-06 3.7E-11 70.6 10.1 143 16-170 114-302 (318)
360 PF03193 DUF258: Protein of un 98.4 2E-07 4.4E-12 68.1 4.0 58 18-78 37-100 (161)
361 KOG0085 G protein subunit Galp 98.4 5.1E-07 1.1E-11 68.9 5.6 119 63-181 197-352 (359)
362 cd01851 GBP Guanylate-binding 98.4 1.1E-05 2.3E-10 62.8 13.0 89 14-102 5-105 (224)
363 cd01856 YlqF YlqF. Proteins o 98.4 1.4E-06 3E-11 64.9 7.6 97 73-177 3-100 (171)
364 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 1.6E-06 3.5E-11 62.4 7.6 77 83-165 6-84 (141)
365 KOG1143 Predicted translation 98.4 1.1E-06 2.3E-11 71.6 6.9 151 15-169 166-379 (591)
366 COG1618 Predicted nucleotide k 98.4 3.6E-05 7.8E-10 55.8 14.0 146 15-177 4-175 (179)
367 COG1161 Predicted GTPases [Gen 98.4 8.1E-07 1.8E-11 72.7 6.4 60 14-77 130-189 (322)
368 TIGR03596 GTPase_YlqF ribosome 98.3 2.7E-06 5.8E-11 68.3 8.5 101 72-180 4-105 (276)
369 cd01849 YlqF_related_GTPase Yl 98.3 1.4E-06 3E-11 63.8 6.3 55 15-74 99-154 (155)
370 PRK14974 cell division protein 98.3 5.5E-06 1.2E-10 68.0 9.9 94 65-170 223-322 (336)
371 cd03112 CobW_like The function 98.3 4.6E-06 9.9E-11 61.3 8.6 63 65-133 87-158 (158)
372 TIGR00064 ftsY signal recognit 98.3 1.2E-05 2.5E-10 64.4 11.5 95 64-170 154-260 (272)
373 KOG0447 Dynamin-like GTP bindi 98.3 1.7E-05 3.7E-10 67.7 12.8 138 11-150 303-508 (980)
374 KOG1487 GTP-binding protein DR 98.3 5E-06 1.1E-10 64.6 8.7 89 17-107 60-155 (358)
375 PRK12288 GTPase RsgA; Reviewed 98.3 1.7E-06 3.7E-11 71.4 6.1 58 19-79 208-271 (347)
376 PRK01889 GTPase RsgA; Reviewed 98.3 5.5E-06 1.2E-10 68.8 8.7 84 85-174 109-193 (356)
377 PRK09563 rbgA GTPase YlqF; Rev 98.2 5.2E-06 1.1E-10 67.0 8.0 101 72-180 7-108 (287)
378 TIGR01425 SRP54_euk signal rec 98.2 1.9E-05 4.1E-10 66.7 11.3 114 16-135 100-253 (429)
379 COG1162 Predicted GTPases [Gen 98.2 2.5E-06 5.5E-11 68.1 5.5 59 18-79 166-230 (301)
380 KOG0099 G protein subunit Galp 98.2 1.2E-05 2.7E-10 62.5 8.9 69 65-133 202-281 (379)
381 PRK12289 GTPase RsgA; Reviewed 98.2 3E-06 6.5E-11 70.0 5.8 58 18-78 174-237 (352)
382 PRK13796 GTPase YqeH; Provisio 98.2 1.7E-05 3.7E-10 66.1 10.2 92 77-176 58-157 (365)
383 COG3523 IcmF Type VI protein s 98.2 1.1E-05 2.4E-10 75.2 9.6 111 20-135 129-270 (1188)
384 PF09547 Spore_IV_A: Stage IV 98.1 7.9E-05 1.7E-09 62.1 13.1 143 15-162 16-219 (492)
385 TIGR00157 ribosome small subun 98.1 5.5E-06 1.2E-10 65.3 6.1 57 18-78 122-184 (245)
386 KOG0463 GTP-binding protein GP 98.1 2E-05 4.3E-10 64.4 8.7 149 16-169 133-349 (641)
387 PRK13796 GTPase YqeH; Provisio 98.1 5.9E-06 1.3E-10 68.9 5.6 57 17-76 161-221 (365)
388 TIGR03597 GTPase_YqeH ribosome 98.1 8.8E-06 1.9E-10 67.8 6.6 58 17-77 155-216 (360)
389 PRK14722 flhF flagellar biosyn 98.0 6.6E-05 1.4E-09 62.4 10.9 146 17-168 138-322 (374)
390 cd03115 SRP The signal recogni 98.0 7.9E-05 1.7E-09 55.5 9.8 83 64-156 82-170 (173)
391 COG1162 Predicted GTPases [Gen 98.0 7.6E-05 1.6E-09 59.7 10.0 91 83-176 74-165 (301)
392 cd01854 YjeQ_engC YjeQ/EngC. 98.0 1.6E-05 3.6E-10 64.1 6.0 60 17-79 162-227 (287)
393 PRK00098 GTPase RsgA; Reviewed 98.0 1.8E-05 3.9E-10 64.3 6.1 57 18-77 166-228 (298)
394 PRK13695 putative NTPase; Prov 98.0 0.0002 4.3E-09 53.4 11.3 77 85-177 93-172 (174)
395 cd03110 Fer4_NifH_child This p 98.0 0.00052 1.1E-08 51.3 13.6 85 63-156 91-175 (179)
396 PF03266 NTPase_1: NTPase; In 97.9 6.6E-05 1.4E-09 55.7 8.2 135 18-166 1-163 (168)
397 PF00448 SRP54: SRP54-type pro 97.9 0.00017 3.7E-09 54.9 9.7 138 18-167 3-180 (196)
398 cd03114 ArgK-like The function 97.9 7.4E-05 1.6E-09 54.3 7.4 58 64-132 91-148 (148)
399 KOG1424 Predicted GTP-binding 97.9 2.2E-05 4.9E-10 66.4 5.1 59 16-78 314-372 (562)
400 PRK12727 flagellar biosynthesi 97.9 0.00029 6.4E-09 60.9 11.8 138 17-166 351-523 (559)
401 PF11111 CENP-M: Centromere pr 97.9 0.001 2.3E-08 48.8 13.0 145 9-177 8-152 (176)
402 PF02492 cobW: CobW/HypB/UreG, 97.8 6E-05 1.3E-09 56.5 6.7 80 65-151 85-170 (178)
403 KOG4273 Uncharacterized conser 97.8 0.00011 2.4E-09 57.0 8.1 114 17-135 5-123 (418)
404 COG0523 Putative GTPases (G3E 97.8 0.00039 8.5E-09 56.8 11.8 144 18-170 3-193 (323)
405 PRK14721 flhF flagellar biosyn 97.8 0.00014 3.1E-09 61.4 9.2 138 17-166 192-365 (420)
406 COG1419 FlhF Flagellar GTP-bin 97.8 0.0012 2.5E-08 55.1 13.9 155 16-180 203-396 (407)
407 PRK11889 flhF flagellar biosyn 97.8 0.00035 7.6E-09 58.3 10.8 140 17-168 242-418 (436)
408 KOG0465 Mitochondrial elongati 97.8 6.7E-05 1.5E-09 64.7 6.8 119 12-134 35-169 (721)
409 PRK11537 putative GTP-binding 97.8 0.00078 1.7E-08 55.2 12.5 95 65-170 91-196 (318)
410 PRK10867 signal recognition pa 97.8 0.00031 6.6E-09 59.7 10.2 86 64-159 183-274 (433)
411 PRK00771 signal recognition pa 97.8 0.00023 4.9E-09 60.6 9.5 135 15-159 94-266 (437)
412 KOG0459 Polypeptide release fa 97.7 5.7E-05 1.2E-09 62.2 5.0 160 11-171 74-279 (501)
413 cd02042 ParA ParA and ParB of 97.7 0.0003 6.6E-09 47.6 7.8 82 19-112 2-84 (104)
414 TIGR00959 ffh signal recogniti 97.7 0.00046 9.9E-09 58.6 10.2 87 64-160 182-274 (428)
415 PRK05703 flhF flagellar biosyn 97.7 0.0011 2.4E-08 56.4 12.5 90 65-166 300-396 (424)
416 cd00009 AAA The AAA+ (ATPases 97.6 0.00046 9.9E-09 49.0 8.6 24 17-40 20-43 (151)
417 cd02038 FleN-like FleN is a me 97.6 0.00035 7.7E-09 50.1 7.1 107 20-134 4-110 (139)
418 cd03222 ABC_RNaseL_inhibitor T 97.6 0.0018 3.8E-08 48.5 10.8 23 18-40 27-49 (177)
419 PF00004 AAA: ATPase family as 97.6 0.00042 9E-09 48.7 7.2 22 19-40 1-22 (132)
420 PRK12724 flagellar biosynthesi 97.5 0.00086 1.9E-08 56.5 9.6 133 17-159 224-393 (432)
421 PRK06731 flhF flagellar biosyn 97.5 0.0014 3E-08 52.4 10.3 140 17-168 76-252 (270)
422 PRK12726 flagellar biosynthesi 97.5 0.00093 2E-08 55.6 9.4 141 16-168 206-383 (407)
423 PRK14723 flhF flagellar biosyn 97.5 0.0019 4.2E-08 58.3 12.0 152 18-179 187-380 (767)
424 KOG2484 GTPase [General functi 97.4 0.00016 3.4E-09 59.6 4.0 60 11-75 247-307 (435)
425 PRK12723 flagellar biosynthesi 97.4 0.0039 8.4E-08 52.4 12.3 138 17-166 175-351 (388)
426 PF06858 NOG1: Nucleolar GTP-b 97.4 0.00075 1.6E-08 40.1 5.6 45 87-132 12-58 (58)
427 TIGR00150 HI0065_YjeE ATPase, 97.4 0.00074 1.6E-08 47.9 6.7 24 18-41 24-47 (133)
428 COG1126 GlnQ ABC-type polar am 97.4 0.00019 4.2E-09 54.6 3.9 23 18-40 30-52 (240)
429 KOG2485 Conserved ATP/GTP bind 97.4 0.00035 7.5E-09 55.9 5.4 62 13-75 140-206 (335)
430 cd01983 Fer4_NifH The Fer4_Nif 97.4 0.0018 3.8E-08 42.7 8.3 69 19-101 2-71 (99)
431 PRK06995 flhF flagellar biosyn 97.4 0.0032 7E-08 54.2 11.6 151 18-180 258-449 (484)
432 PF13207 AAA_17: AAA domain; P 97.3 0.00018 3.9E-09 50.1 3.1 22 18-39 1-22 (121)
433 PF13401 AAA_22: AAA domain; P 97.3 0.00016 3.5E-09 51.0 2.8 23 18-40 6-28 (131)
434 COG4598 HisP ABC-type histidin 97.3 0.0022 4.9E-08 47.7 8.7 37 144-180 164-202 (256)
435 PF13555 AAA_29: P-loop contai 97.3 0.00024 5.2E-09 43.2 3.0 23 18-40 25-47 (62)
436 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.3 0.0081 1.8E-07 43.3 11.6 23 18-40 28-50 (144)
437 PRK04195 replication factor C 97.3 0.0052 1.1E-07 53.4 12.4 25 16-40 39-63 (482)
438 PRK08118 topology modulation p 97.3 0.0002 4.3E-09 53.1 3.2 24 17-40 2-25 (167)
439 PRK10646 ADP-binding protein; 97.3 0.0018 3.8E-08 47.1 7.9 24 18-41 30-53 (153)
440 COG0563 Adk Adenylate kinase a 97.3 0.00022 4.8E-09 53.4 3.1 22 18-39 2-23 (178)
441 KOG3859 Septins (P-loop GTPase 97.3 0.00063 1.4E-08 53.7 5.6 61 14-74 40-104 (406)
442 PRK07261 topology modulation p 97.3 0.00024 5.1E-09 52.9 3.1 22 18-39 2-23 (171)
443 cd03111 CpaE_like This protein 97.3 0.0022 4.7E-08 43.7 7.6 100 22-130 6-106 (106)
444 TIGR02475 CobW cobalamin biosy 97.3 0.0054 1.2E-07 50.8 11.3 22 18-39 6-27 (341)
445 PF13671 AAA_33: AAA domain; P 97.3 0.00023 4.9E-09 51.0 2.8 21 19-39 2-22 (143)
446 COG0802 Predicted ATPase or ki 97.2 0.0014 3.1E-08 47.0 6.6 31 18-48 27-57 (149)
447 COG1116 TauB ABC-type nitrate/ 97.2 0.00033 7.2E-09 54.5 3.6 23 18-40 31-53 (248)
448 KOG0469 Elongation factor 2 [T 97.2 0.00061 1.3E-08 57.9 5.0 115 15-133 18-162 (842)
449 PF02367 UPF0079: Uncharacteri 97.2 0.0007 1.5E-08 47.3 4.6 25 17-41 16-40 (123)
450 COG1136 SalX ABC-type antimicr 97.2 0.00031 6.8E-09 54.2 3.0 23 18-40 33-55 (226)
451 PF00005 ABC_tran: ABC transpo 97.1 0.00039 8.5E-09 49.5 3.0 23 18-40 13-35 (137)
452 COG0194 Gmk Guanylate kinase [ 97.1 0.00027 5.7E-09 52.6 1.8 23 18-40 6-28 (191)
453 cd02019 NK Nucleoside/nucleoti 97.1 0.00054 1.2E-08 42.8 3.0 21 19-39 2-22 (69)
454 COG1120 FepC ABC-type cobalami 97.1 0.00045 9.8E-09 54.4 3.0 22 18-39 30-51 (258)
455 KOG0780 Signal recognition par 97.1 0.0033 7E-08 52.0 7.8 97 15-111 100-236 (483)
456 PF05621 TniB: Bacterial TniB 97.1 0.0043 9.3E-08 50.0 8.4 107 12-132 57-191 (302)
457 KOG0066 eIF2-interacting prote 97.0 0.0066 1.4E-07 51.3 9.5 28 13-40 610-637 (807)
458 cd01131 PilT Pilus retraction 97.0 0.0036 7.7E-08 47.7 7.5 22 19-40 4-25 (198)
459 COG3640 CooC CO dehydrogenase 97.0 0.013 2.9E-07 45.3 10.3 62 66-133 135-197 (255)
460 PF13521 AAA_28: AAA domain; P 97.0 0.00041 8.8E-09 51.1 2.1 22 18-39 1-22 (163)
461 cd03216 ABC_Carb_Monos_I This 97.0 0.019 4.1E-07 42.2 11.0 23 18-40 28-50 (163)
462 PRK10078 ribose 1,5-bisphospho 97.0 0.00063 1.4E-08 51.3 3.0 23 18-40 4-26 (186)
463 PRK14738 gmk guanylate kinase; 97.0 0.0014 3E-08 50.4 4.9 31 10-40 7-37 (206)
464 cd02036 MinD Bacterial cell di 97.0 0.027 5.9E-07 41.7 11.9 84 66-156 64-147 (179)
465 PRK14737 gmk guanylate kinase; 97.0 0.00066 1.4E-08 51.2 3.0 24 17-40 5-28 (186)
466 COG0396 sufC Cysteine desulfur 97.0 0.0012 2.7E-08 50.8 4.3 22 19-40 33-54 (251)
467 PRK00411 cdc6 cell division co 97.0 0.0055 1.2E-07 51.7 8.8 23 17-39 56-78 (394)
468 COG3840 ThiQ ABC-type thiamine 97.0 0.00074 1.6E-08 50.2 3.0 23 18-40 27-49 (231)
469 cd00267 ABC_ATPase ABC (ATP-bi 97.0 0.021 4.6E-07 41.6 10.9 23 18-40 27-49 (157)
470 cd00071 GMPK Guanosine monopho 96.9 0.00079 1.7E-08 48.2 3.0 21 19-39 2-22 (137)
471 cd00820 PEPCK_HprK Phosphoenol 96.9 0.00081 1.8E-08 45.8 2.8 20 18-37 17-36 (107)
472 smart00382 AAA ATPases associa 96.9 0.00092 2E-08 46.9 3.3 25 17-41 3-27 (148)
473 cd03238 ABC_UvrA The excision 96.9 0.00092 2E-08 50.0 3.2 21 18-38 23-43 (176)
474 TIGR02322 phosphon_PhnN phosph 96.9 0.00083 1.8E-08 50.2 3.0 22 18-39 3-24 (179)
475 COG1121 ZnuC ABC-type Mn/Zn tr 96.9 0.00082 1.8E-08 52.8 3.0 22 18-39 32-53 (254)
476 PF03215 Rad17: Rad17 cell cyc 96.9 0.0064 1.4E-07 53.1 8.7 23 18-40 47-69 (519)
477 PRK06217 hypothetical protein; 96.9 0.00095 2.1E-08 50.2 3.1 23 17-39 2-24 (183)
478 TIGR00235 udk uridine kinase. 96.9 0.0012 2.5E-08 50.7 3.6 25 15-39 5-29 (207)
479 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.9 0.001 2.2E-08 51.4 3.2 23 18-40 32-54 (218)
480 PF03205 MobB: Molybdopterin g 96.8 0.001 2.2E-08 47.8 3.0 24 17-40 1-24 (140)
481 COG3839 MalK ABC-type sugar tr 96.8 0.0012 2.5E-08 54.2 3.6 22 19-40 32-53 (338)
482 PF13238 AAA_18: AAA domain; P 96.8 0.00095 2.1E-08 46.7 2.7 21 19-39 1-21 (129)
483 COG1117 PstB ABC-type phosphat 96.8 0.00097 2.1E-08 50.9 2.8 21 18-38 35-55 (253)
484 PRK05416 glmZ(sRNA)-inactivati 96.8 0.021 4.6E-07 46.1 10.7 86 18-132 8-95 (288)
485 cd03225 ABC_cobalt_CbiO_domain 96.8 0.0011 2.5E-08 50.8 3.3 23 18-40 29-51 (211)
486 TIGR03263 guanyl_kin guanylate 96.8 0.0011 2.3E-08 49.6 3.0 23 18-40 3-25 (180)
487 TIGR01166 cbiO cobalt transpor 96.8 0.0011 2.3E-08 50.2 3.0 23 18-40 20-42 (190)
488 PRK01889 GTPase RsgA; Reviewed 96.8 0.0014 3E-08 54.6 3.9 23 18-40 197-219 (356)
489 TIGR00960 3a0501s02 Type II (G 96.8 0.0011 2.5E-08 51.0 3.2 23 18-40 31-53 (216)
490 COG3638 ABC-type phosphate/pho 96.8 0.0011 2.3E-08 51.3 2.9 21 18-38 32-52 (258)
491 cd03226 ABC_cobalt_CbiO_domain 96.8 0.0012 2.6E-08 50.5 3.2 23 18-40 28-50 (205)
492 PRK14530 adenylate kinase; Pro 96.8 0.0012 2.6E-08 51.0 3.2 22 17-38 4-25 (215)
493 TIGR02673 FtsE cell division A 96.8 0.0012 2.7E-08 50.7 3.2 23 18-40 30-52 (214)
494 cd03261 ABC_Org_Solvent_Resist 96.8 0.0012 2.7E-08 51.6 3.2 23 18-40 28-50 (235)
495 cd02023 UMPK Uridine monophosp 96.8 0.0012 2.5E-08 50.3 3.0 22 19-40 2-23 (198)
496 cd03292 ABC_FtsE_transporter F 96.8 0.0013 2.8E-08 50.6 3.3 23 18-40 29-51 (214)
497 cd04178 Nucleostemin_like Nucl 96.8 0.0028 6E-08 47.2 4.9 44 90-135 1-44 (172)
498 TIGR03608 L_ocin_972_ABC putat 96.7 0.0014 3E-08 50.2 3.3 23 18-40 26-48 (206)
499 cd01130 VirB11-like_ATPase Typ 96.7 0.0014 3E-08 49.4 3.2 23 18-40 27-49 (186)
500 cd03259 ABC_Carb_Solutes_like 96.7 0.0014 3E-08 50.5 3.3 23 18-40 28-50 (213)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-41 Score=246.61 Aligned_cols=176 Identities=49% Similarity=0.840 Sum_probs=168.1
Q ss_pred CCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCC
Q 040481 11 GGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAV 90 (222)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 90 (222)
...++.+||+|+|++|||||.|+.++....+.+.+..|+|+++....+.++++.+++++|||+|+++|......+|++++
T Consensus 4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ah 83 (205)
T KOG0084|consen 4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 83 (205)
T ss_pred cccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCe-EEEEccCCCCCHHHH
Q 040481 91 GALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLF-FMETSALDSTNVKSA 169 (222)
Q Consensus 91 ~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~~ 169 (222)
+||+|||+++.+||+.+..|+.++..+....+|.++||||+|+.+.+.++.++++.|+..++++ ++++||+++.||.+.
T Consensus 84 Gii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~ 163 (205)
T KOG0084|consen 84 GIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDA 163 (205)
T ss_pred eEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHhhhhcc
Q 040481 170 FEIVIREIYSNVSRKVL 186 (222)
Q Consensus 170 ~~~i~~~~~~~~~~~~~ 186 (222)
|..|...+.++......
T Consensus 164 F~~la~~lk~~~~~~~~ 180 (205)
T KOG0084|consen 164 FLTLAKELKQRKGLHVK 180 (205)
T ss_pred HHHHHHHHHHhcccCCC
Confidence 99999988877665443
No 2
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.6e-38 Score=231.62 Aligned_cols=172 Identities=48% Similarity=0.886 Sum_probs=166.6
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCE
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 91 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 91 (222)
+.++.+||+++|+++||||+|+.++..+.+...+..++|+++....+..++..+.+++|||+|++++..+...+|+.|++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 040481 92 ALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFE 171 (222)
Q Consensus 92 vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 171 (222)
+++|||+++..||+++..|+..+..+....+|.++||||+|+...+.++.+..+.+|.++|++|+|+||++|.||+++|.
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~ 167 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL 167 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence 99999999999999999999999999998999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 040481 172 IVIREIYSNVSR 183 (222)
Q Consensus 172 ~i~~~~~~~~~~ 183 (222)
.+...++...+.
T Consensus 168 ~La~~i~~k~~~ 179 (207)
T KOG0078|consen 168 SLARDILQKLED 179 (207)
T ss_pred HHHHHHHhhcch
Confidence 999999875544
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-38 Score=229.11 Aligned_cols=172 Identities=39% Similarity=0.714 Sum_probs=162.9
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
...+||+++|+.+||||||+-++..+.+.+...+|+|.-+..+.+.+++..++|.||||+|+++|.++.+.+|++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 45789999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 040481 94 IVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIV 173 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 173 (222)
+|||+++.+||..+..|+.++.+.....+-+.+||||+||.+.+++..+++..+++..+..|+++||++|.||+++|..|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence 99999999999999999999999888778778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhc
Q 040481 174 IREIYSNVSRKV 185 (222)
Q Consensus 174 ~~~~~~~~~~~~ 185 (222)
.+.+........
T Consensus 163 a~~lp~~~~~~~ 174 (200)
T KOG0092|consen 163 AEKLPCSDPQER 174 (200)
T ss_pred HHhccCcccccc
Confidence 998887765543
No 4
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-37 Score=225.79 Aligned_cols=173 Identities=38% Similarity=0.661 Sum_probs=161.1
Q ss_pred CCCCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcC
Q 040481 9 GGGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88 (222)
Q Consensus 9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 88 (222)
+....-+..||+++|+.+|||||||.+++...+...|.+|+|+++...++.+.+..+.+++|||+|+++|..+.+.+++.
T Consensus 15 ~~~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rd 94 (221)
T KOG0094|consen 15 TFGAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 94 (221)
T ss_pred ccCccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccC
Confidence 34455556899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHhcCCCC-CcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 040481 89 AVGALIVYDITRRTTFDSISRWLDELKTHSDTT-VARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVK 167 (222)
Q Consensus 89 ~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 167 (222)
+.++|+|||+++..||+...+|+..+......+ +-+++||||.||.+.+++..++....++++++.|+++||+.|.||.
T Consensus 95 s~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk 174 (221)
T KOG0094|consen 95 SSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVK 174 (221)
T ss_pred CeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHH
Confidence 999999999999999999999999999988764 7777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 040481 168 SAFEIVIREIYSNV 181 (222)
Q Consensus 168 ~~~~~i~~~~~~~~ 181 (222)
++|..|...+....
T Consensus 175 ~lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 175 QLFRRIAAALPGME 188 (221)
T ss_pred HHHHHHHHhccCcc
Confidence 99999777666553
No 5
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-37 Score=226.51 Aligned_cols=182 Identities=66% Similarity=1.050 Sum_probs=173.5
Q ss_pred CCCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCC
Q 040481 10 GGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGA 89 (222)
Q Consensus 10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 89 (222)
....++.+||+++|++++|||-|+.++..+++.....+|+|+++....+.++++.+..+||||+|+++|+....++|+.+
T Consensus 8 ~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgA 87 (222)
T KOG0087|consen 8 SEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGA 87 (222)
T ss_pred ccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccc
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 040481 90 VGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSA 169 (222)
Q Consensus 90 d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 169 (222)
.+.++|||++.+.+|+.+.+|+.+++.+.+..+++++||||+||...+.+..++++.++...+..++++||.++.||..+
T Consensus 88 vGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~a 167 (222)
T KOG0087|consen 88 VGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKA 167 (222)
T ss_pred ceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHH
Confidence 99999999999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCcch
Q 040481 170 FEIVIREIYSNVSRKVLNSDSY 191 (222)
Q Consensus 170 ~~~i~~~~~~~~~~~~~~s~~~ 191 (222)
|..++..++....++.......
T Consensus 168 F~~~l~~I~~~vs~k~~~~~~~ 189 (222)
T KOG0087|consen 168 FERVLTEIYKIVSKKQLDENND 189 (222)
T ss_pred HHHHHHHHHHHHHHHhhhcccc
Confidence 9999999999988776554433
No 6
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=6e-37 Score=215.89 Aligned_cols=170 Identities=47% Similarity=0.780 Sum_probs=161.2
Q ss_pred CCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCC
Q 040481 11 GGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAV 90 (222)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 90 (222)
+.....+||+++|.+|+|||+|+.++..+.+.+....++|+++.++.+.+++..+++-||||+|+++|..+++.+|+.+.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 040481 91 GALIVYDITRRTTFDSISRWLDELKTHSD-TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSA 169 (222)
Q Consensus 91 ~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 169 (222)
++|+|||++.+++|..+..|++++..+.. ..+..++|+||+|....+.+..++...|++++++.|+++||++.+||...
T Consensus 86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCC 165 (209)
T ss_pred eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence 99999999999999999999999988875 55667899999999888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 040481 170 FEIVIREIYSN 180 (222)
Q Consensus 170 ~~~i~~~~~~~ 180 (222)
|+.++.++++-
T Consensus 166 FeelveKIi~t 176 (209)
T KOG0080|consen 166 FEELVEKIIET 176 (209)
T ss_pred HHHHHHHHhcC
Confidence 99999988754
No 7
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.9e-37 Score=219.97 Aligned_cols=170 Identities=54% Similarity=0.910 Sum_probs=163.2
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEE
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 92 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 92 (222)
..+.+|++++|+.|||||+|+.+++...+.+.+..|+|+++-...+.+++..+++++|||+|++.+.+.+..+|+.+.++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 45779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 040481 93 LIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEI 172 (222)
Q Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 172 (222)
|+|||++.+++|..+..|+..++++....+-+++|+||+||...+.+..++.+.||++++..++++||++++||.+.|..
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n 162 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN 162 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence 99999999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 040481 173 VIREIYSNVS 182 (222)
Q Consensus 173 i~~~~~~~~~ 182 (222)
+...+++...
T Consensus 163 ta~~Iy~~~q 172 (216)
T KOG0098|consen 163 TAKEIYRKIQ 172 (216)
T ss_pred HHHHHHHHHH
Confidence 8888887655
No 8
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=3.6e-36 Score=229.72 Aligned_cols=169 Identities=38% Similarity=0.749 Sum_probs=154.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
+.|+++|+.|||||||++++..+.+...+.++.+.++....+.+++..+.+++||++|++.+..++..+++.+|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 36999999999999999999999998888899888888888889999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHc-CCeEEEEccCCCCCHHHHHHHHHH
Q 040481 97 DITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAE-GLFFMETSALDSTNVKSAFEIVIR 175 (222)
Q Consensus 97 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~~~i~~ 175 (222)
|++++.+|+.+..|+..+......++|+++|+||+|+.+.+.+..+++.+++... ++.|++|||++|.||+++|.++++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999988776677999999999999877888888888899885 789999999999999999999999
Q ss_pred HHHHHhhhhc
Q 040481 176 EIYSNVSRKV 185 (222)
Q Consensus 176 ~~~~~~~~~~ 185 (222)
.+........
T Consensus 161 ~~~~~~~~~~ 170 (202)
T cd04120 161 DILKKMPLDI 170 (202)
T ss_pred HHHHhCcccc
Confidence 8876544333
No 9
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=6.6e-36 Score=231.27 Aligned_cols=172 Identities=62% Similarity=1.045 Sum_probs=157.9
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCE
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 91 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 91 (222)
..++.+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+++||++|++.+...+..+++.+++
T Consensus 8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~ 87 (216)
T PLN03110 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (216)
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence 35577999999999999999999999998887888888888888888889989999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 040481 92 ALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFE 171 (222)
Q Consensus 92 vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 171 (222)
+|+|||++++.+|+.+..|+..+.......+|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|+
T Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~ 167 (216)
T PLN03110 88 ALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQ 167 (216)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887767899999999999987778888889999999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 040481 172 IVIREIYSNVSR 183 (222)
Q Consensus 172 ~i~~~~~~~~~~ 183 (222)
+++..+.+....
T Consensus 168 ~l~~~i~~~~~~ 179 (216)
T PLN03110 168 TILLEIYHIISK 179 (216)
T ss_pred HHHHHHHHHhhc
Confidence 999998876543
No 10
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=8.9e-36 Score=225.51 Aligned_cols=168 Identities=37% Similarity=0.692 Sum_probs=154.1
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEE
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 92 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 92 (222)
.+..+||+++|+.|||||||++++..+.+...+.++.+.++....+.+++..+.+++||++|++.+..++..+++.+|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 34669999999999999999999999888777778888888778888899999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 040481 93 LIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEI 172 (222)
Q Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 172 (222)
|+|||++++.+|+.+..|+..+.... .++|++|||||.|+...+.+..++++.+++..+++|++|||++|.||+++|++
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~ 161 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE 161 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999997765 57999999999999877888999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 040481 173 VIREIYSNV 181 (222)
Q Consensus 173 i~~~~~~~~ 181 (222)
+++.+..+.
T Consensus 162 l~~~i~~~~ 170 (189)
T cd04121 162 LARIVLMRH 170 (189)
T ss_pred HHHHHHHhc
Confidence 998777543
No 11
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.4e-35 Score=225.96 Aligned_cols=168 Identities=38% Similarity=0.722 Sum_probs=150.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEEC-CeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEID-GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIV 95 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 95 (222)
+||+++|++|||||||+++|.++.+...+.++.+.++....+.++ +..+.+.+||+||++.+..++..+++.+|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999998888888988888877777777 7889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhcC----CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcC-CeEEEEccCCCCCHHHHH
Q 040481 96 YDITRRTTFDSISRWLDELKTHS----DTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEG-LFFMETSALDSTNVKSAF 170 (222)
Q Consensus 96 ~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~ 170 (222)
||++++.+|+.+..|+..+.... ...+|++||+||+|+.+.+.+..+++.+++...+ +.++++||++|.||+++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999998886532 2568999999999998667788889999999988 689999999999999999
Q ss_pred HHHHHHHHHHhhhh
Q 040481 171 EIVIREIYSNVSRK 184 (222)
Q Consensus 171 ~~i~~~~~~~~~~~ 184 (222)
+++++.+.+.....
T Consensus 161 ~~l~~~l~~~~~~~ 174 (201)
T cd04107 161 RFLVKNILANDKNL 174 (201)
T ss_pred HHHHHHHHHhchhh
Confidence 99999888765443
No 12
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.7e-36 Score=209.84 Aligned_cols=168 Identities=45% Similarity=0.803 Sum_probs=160.1
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEE
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 92 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 92 (222)
-++.++.+|+|++|+|||+|+.++....+...|..++|+++.+.++.+++..+.++|||++|++.|..++..+|+..+++
T Consensus 5 ~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv 84 (198)
T KOG0079|consen 5 YDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGV 84 (198)
T ss_pred HHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceE
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 040481 93 LIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEI 172 (222)
Q Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 172 (222)
++|||+++.+||.+..+|+.+++...+ .+|-++||||.|.++.+.+..++++.|+...++.+|++||++++|+...|.-
T Consensus 85 ~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~c 163 (198)
T KOG0079|consen 85 IVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHC 163 (198)
T ss_pred EEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHH
Confidence 999999999999999999999999886 6788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 040481 173 VIREIYSNV 181 (222)
Q Consensus 173 i~~~~~~~~ 181 (222)
|...++..+
T Consensus 164 it~qvl~~k 172 (198)
T KOG0079|consen 164 ITKQVLQAK 172 (198)
T ss_pred HHHHHHHHH
Confidence 999887766
No 13
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.9e-34 Score=218.69 Aligned_cols=165 Identities=42% Similarity=0.763 Sum_probs=151.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.+|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999987778888888888788888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 040481 97 DITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIRE 176 (222)
Q Consensus 97 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~ 176 (222)
|++++.+|+.+..|+..+........|+++|+||.|+.+...+..+++..++...+++++++||++|.|++++|.++++.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999988766668999999999998777788888888998889999999999999999999999998
Q ss_pred HHHHh
Q 040481 177 IYSNV 181 (222)
Q Consensus 177 ~~~~~ 181 (222)
+.++.
T Consensus 161 ~~~~~ 165 (188)
T cd04125 161 IIKRL 165 (188)
T ss_pred HHHHh
Confidence 87654
No 14
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.6e-34 Score=222.31 Aligned_cols=169 Identities=26% Similarity=0.445 Sum_probs=150.0
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCE
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 91 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 91 (222)
+....+||+++|+++||||+|+++|..+.+...+.|+.+..+. ..+.+++..+.+.+|||+|++.+..++..+++.+|+
T Consensus 9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~ 87 (232)
T cd04174 9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 87 (232)
T ss_pred CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence 5567789999999999999999999999998888898876654 457788999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCc------------CCCCCHHHHHHHHHHcCC-eEEE
Q 040481 92 ALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDLES------------IRNVSTEEGKSLAEAEGL-FFME 157 (222)
Q Consensus 92 vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~ 157 (222)
+|+|||++++.+|+.+ ..|+..+.... ...|+++|+||.|+.+ .+.+..+++.+++...++ .|++
T Consensus 88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~E 166 (232)
T cd04174 88 VLLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLE 166 (232)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEE
Confidence 9999999999999985 89999998765 4679999999999964 256888999999999998 6999
Q ss_pred EccCCCC-CHHHHHHHHHHHHHHHhh
Q 040481 158 TSALDST-NVKSAFEIVIREIYSNVS 182 (222)
Q Consensus 158 ~sa~~~~-~i~~~~~~i~~~~~~~~~ 182 (222)
|||++|. ||+++|..++..+++...
T Consensus 167 tSAktg~~~V~e~F~~~~~~~~~~~~ 192 (232)
T cd04174 167 CSAFTSEKSIHSIFRSASLLCLNKLS 192 (232)
T ss_pred ccCCcCCcCHHHHHHHHHHHHHHhcc
Confidence 9999998 899999999998876543
No 15
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3.1e-35 Score=207.78 Aligned_cols=205 Identities=38% Similarity=0.683 Sum_probs=175.6
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEE-CCeEEEEEEEeCCCcchhhhhHHHhhcCCCE
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEI-DGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 91 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 91 (222)
..+.++++++|++-+|||+|++.++.+.+++.++|+.|++++-..+.+ ++..+++++|||+|++.|.+.++.+|+++-+
T Consensus 5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg 84 (213)
T KOG0091|consen 5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG 84 (213)
T ss_pred eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence 356789999999999999999999999999999999999988777666 6788999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCC-CCCcE-EEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 040481 92 ALIVYDITRRTTFDSISRWLDELKTHSD-TTVAR-MLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSA 169 (222)
Q Consensus 92 vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~-iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 169 (222)
+++|||+++++||+.+..|+.+...+.. +..++ .+||+|+||...++++.+++++++..++..|+++||++|.||++.
T Consensus 85 vllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEA 164 (213)
T KOG0091|consen 85 VLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEA 164 (213)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHH
Confidence 9999999999999999999998877665 44444 567999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh-hccCCcchhhhhccccceeecccCCCCCcCCCCcccc
Q 040481 170 FEIVIREIYSNVSR-KVLNSDSYKAELSLNRVTLVKSETDGSKQTSGYFSCC 220 (222)
Q Consensus 170 ~~~i~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 220 (222)
|+.+.+.++....+ -+--.+.+....+....++..+....+.. +.+||
T Consensus 165 F~mlaqeIf~~i~qGeik~edgw~gvKSsrpn~i~~s~~~~~P~---k~c~C 213 (213)
T KOG0091|consen 165 FDMLAQEIFQAIQQGEIKLEDGWGGVKSSRPNQIPRSPSRKQPS---KPCQC 213 (213)
T ss_pred HHHHHHHHHHHHhcCceeeeeccccccccCCCcCCCcccccCCC---CCCCC
Confidence 99999999887765 44445566555555555566666555544 45566
No 16
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=3.9e-34 Score=212.78 Aligned_cols=164 Identities=50% Similarity=0.868 Sum_probs=151.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEE
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIV 95 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 95 (222)
.+||+++|++|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 47999999999999999999999988888888888888877788888899999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 040481 96 YDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIR 175 (222)
Q Consensus 96 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 175 (222)
||++++.+|+.+..|+..+........|+++|+||+|+...+.+..+++.+++...+++++++||++|.|+.++|..++.
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999887776677899999999999887788888999999999999999999999999999999998
Q ss_pred HHHH
Q 040481 176 EIYS 179 (222)
Q Consensus 176 ~~~~ 179 (222)
.+++
T Consensus 162 ~~~~ 165 (166)
T cd04122 162 KIYQ 165 (166)
T ss_pred HHhh
Confidence 7754
No 17
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=5.8e-35 Score=210.45 Aligned_cols=172 Identities=37% Similarity=0.703 Sum_probs=158.4
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCE
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 91 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 91 (222)
.+...+||+++|++|+|||+|++++.+..+...+..+++.++..+.+.+++..+.+++|||+|+++|.++..++|+.+|.
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc 84 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC 84 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence 45667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcC----CCCCcEEEEEeCCCCCc--CCCCCHHHHHHHHHHc-CCeEEEEccCCCC
Q 040481 92 ALIVYDITRRTTFDSISRWLDELKTHS----DTTVARMLVGNKCDLES--IRNVSTEEGKSLAEAE-GLFFMETSALDST 164 (222)
Q Consensus 92 vi~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~iiv~nK~Dl~~--~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~ 164 (222)
.++|||++++.+|+.+..|..++.... +...|+||+|||+|+.+ .+.++...++.|+... +++|||+||++..
T Consensus 85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT 164 (210)
T ss_pred EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence 999999999999999999999886554 36799999999999975 3789999999999876 5899999999999
Q ss_pred CHHHHHHHHHHHHHHHhhh
Q 040481 165 NVKSAFEIVIREIYSNVSR 183 (222)
Q Consensus 165 ~i~~~~~~i~~~~~~~~~~ 183 (222)
||.+.|..+.+.+++....
T Consensus 165 NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 165 NVDEAFEEIARRALANEDR 183 (210)
T ss_pred cHHHHHHHHHHHHHhccch
Confidence 9999999999988876543
No 18
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.1e-35 Score=208.99 Aligned_cols=212 Identities=35% Similarity=0.642 Sum_probs=181.7
Q ss_pred CCCCCCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhh
Q 040481 7 EGGGGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYY 86 (222)
Q Consensus 7 ~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 86 (222)
+.....+...+||+++|..-+|||+|+-++..+.+...+..+....+..+.+++.+....++||||+|+++|..+-+.+|
T Consensus 4 ~~~~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYY 83 (218)
T KOG0088|consen 4 ETNVDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYY 83 (218)
T ss_pred cccccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEE
Confidence 34455778899999999999999999999999999888888877788888888988899999999999999999999999
Q ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 040481 87 RGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNV 166 (222)
Q Consensus 87 ~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 166 (222)
+.+|++++|||++|+.||+.+..|..+++......+.++||+||+||.+++.+..+++..++..-++.|+++||+++.||
T Consensus 84 RgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi 163 (218)
T KOG0088|consen 84 RGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGI 163 (218)
T ss_pred eCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccC-Ccch-hhhhccccceeecccCCCCCcCCCCccccc
Q 040481 167 KSAFEIVIREIYSNVSRKVLN-SDSY-KAELSLNRVTLVKSETDGSKQTSGYFSCCS 221 (222)
Q Consensus 167 ~~~~~~i~~~~~~~~~~~~~~-s~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 221 (222)
.++|..+..+++++...+... +... ..-...++..+..++.+.... .+.||+
T Consensus 164 ~elFe~Lt~~MiE~~s~~qr~~~~~s~qpp~t~r~~~~iD~e~~a~~s---g~~CC~ 217 (218)
T KOG0088|consen 164 SELFESLTAKMIEHSSQRQRTRSPLSTQPPSTNRSIRLIDNEAEAERS---GKRCCR 217 (218)
T ss_pred HHHHHHHHHHHHHHhhhcccccCCcCCCCCCcccchhccCCCcccccc---cCCccC
Confidence 999999999999887654333 2222 222233445555565544443 455886
No 19
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=4.9e-34 Score=212.48 Aligned_cols=166 Identities=52% Similarity=0.940 Sum_probs=152.7
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
++.+||+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+++||+||++.+...+..+++.+|++|
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 35789999999999999999999999998888899888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 040481 94 IVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIV 173 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 173 (222)
+|||++++.+|+.+..|+..+......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|.++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988766779999999999998777788888888999999999999999999999999999
Q ss_pred HHHHHH
Q 040481 174 IREIYS 179 (222)
Q Consensus 174 ~~~~~~ 179 (222)
++.+..
T Consensus 161 ~~~~~~ 166 (167)
T cd01867 161 AKDIKK 166 (167)
T ss_pred HHHHHh
Confidence 988764
No 20
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=8.3e-34 Score=217.06 Aligned_cols=170 Identities=44% Similarity=0.751 Sum_probs=152.8
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
+..++|+++|++|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 45799999999999999999999999888778888888887778888888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 040481 94 IVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIV 173 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 173 (222)
+|||++++++|+.+..|+..+.... ...|++||+||+|+.+...+..+++..++...+++++++||++|.||.++|++|
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l 162 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCI 162 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHH
Confidence 9999999999999999999887654 468999999999998767777888888999999999999999999999999999
Q ss_pred HHHHHHHhhhh
Q 040481 174 IREIYSNVSRK 184 (222)
Q Consensus 174 ~~~~~~~~~~~ 184 (222)
+..++.....+
T Consensus 163 ~~~~~~~~~~~ 173 (199)
T cd04110 163 TELVLRAKKDN 173 (199)
T ss_pred HHHHHHhhhcc
Confidence 99988765443
No 21
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.7e-35 Score=204.60 Aligned_cols=173 Identities=40% Similarity=0.771 Sum_probs=163.2
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCE
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 91 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 91 (222)
.....+||+++|+.|+|||.|+++++.+.+++....++|+++..+++.++++.+++++|||+|+++|.+.+..+|+++++
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha 82 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA 82 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence 34677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 040481 92 ALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFE 171 (222)
Q Consensus 92 vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 171 (222)
+|+|||++...+|+-+.+|+.+++.+...++--|+|+||.|+.+.++++....++|++.....|+++||++..|++.+|.
T Consensus 83 lilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~ 162 (213)
T KOG0095|consen 83 LILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL 162 (213)
T ss_pred EEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence 99999999999999999999999999988888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhh
Q 040481 172 IVIREIYSNVSRK 184 (222)
Q Consensus 172 ~i~~~~~~~~~~~ 184 (222)
.+.-.+......+
T Consensus 163 ~~a~rli~~ar~~ 175 (213)
T KOG0095|consen 163 DLACRLISEARQN 175 (213)
T ss_pred HHHHHHHHHHHhc
Confidence 8888777665443
No 22
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=4e-34 Score=217.34 Aligned_cols=165 Identities=36% Similarity=0.581 Sum_probs=144.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEE
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYD 97 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d 97 (222)
||+++|++|||||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 589999999999999999999888777777766444 3456678888899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcCC---CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 040481 98 ITRRTTFDSISRWLDELKTHSD---TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVI 174 (222)
Q Consensus 98 ~~~~~s~~~~~~~~~~i~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 174 (222)
+++..+|+.+..|+..+..... ...|+++|+||+|+.+.+.+...+..+++...+++++++||++|.|++++|.+++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999988866542 5689999999999987777888888889988999999999999999999999999
Q ss_pred HHHHHHhhh
Q 040481 175 REIYSNVSR 183 (222)
Q Consensus 175 ~~~~~~~~~ 183 (222)
+.+.++...
T Consensus 160 ~~l~~~~~~ 168 (190)
T cd04144 160 RALRQQRQG 168 (190)
T ss_pred HHHHHhhcc
Confidence 887655433
No 23
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=6.7e-34 Score=216.25 Aligned_cols=165 Identities=47% Similarity=0.769 Sum_probs=147.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCC-CCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNP-HSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIV 95 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 95 (222)
+||+++|++|||||||+++|.+..+.. .+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 489999999999999999999988754 5667777777766777888889999999999999999899999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 040481 96 YDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIR 175 (222)
Q Consensus 96 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 175 (222)
||++++.+|+.+..|+..+.......+|+++|+||.|+...+.+..++...++..++++|+++||++|.|++++|.+|++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999998877668999999999999876777788888899999999999999999999999999999
Q ss_pred HHHHHh
Q 040481 176 EIYSNV 181 (222)
Q Consensus 176 ~~~~~~ 181 (222)
.+....
T Consensus 161 ~~~~~~ 166 (191)
T cd04112 161 ELKHRK 166 (191)
T ss_pred HHHHhc
Confidence 887653
No 24
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-34 Score=200.33 Aligned_cols=175 Identities=43% Similarity=0.775 Sum_probs=164.6
Q ss_pred CCCCCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhc
Q 040481 8 GGGGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYR 87 (222)
Q Consensus 8 ~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 87 (222)
+..+..++.+|++|+|++.+|||+|+.++.+..+...+..+.|+++.++++--..+.+.+++|||+|++.+...+.++|+
T Consensus 13 s~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyR 92 (193)
T KOG0093|consen 13 SIDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYR 92 (193)
T ss_pred cccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhh
Confidence 34467788899999999999999999999999999999999999999998877778899999999999999999999999
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 040481 88 GAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVK 167 (222)
Q Consensus 88 ~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 167 (222)
+++++|++||+++.+||..+..|...+..+.....|+|+++||+|+.+++.++.+..+.+++++|..||++||+.+.||.
T Consensus 93 gamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk 172 (193)
T KOG0093|consen 93 GAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVK 172 (193)
T ss_pred ccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 040481 168 SAFEIVIREIYSNVS 182 (222)
Q Consensus 168 ~~~~~i~~~~~~~~~ 182 (222)
++|+.++..+.+...
T Consensus 173 ~~Fe~lv~~Ic~kms 187 (193)
T KOG0093|consen 173 QVFERLVDIICDKMS 187 (193)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999998887776544
No 25
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=9e-34 Score=213.51 Aligned_cols=163 Identities=33% Similarity=0.558 Sum_probs=145.6
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
...+||+++|+++||||||++++..+.+...+.|+.+..+ ...+.+++..+.+++|||+|++.+..++..+++.+|++|
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 4568999999999999999999999999888888887555 356778899999999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCc------------CCCCCHHHHHHHHHHcCC-eEEEEc
Q 040481 94 IVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDLES------------IRNVSTEEGKSLAEAEGL-FFMETS 159 (222)
Q Consensus 94 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~s 159 (222)
+|||++++.+|+.+ ..|+..+.... ...|+++||||.||.+ .+.+..+++.++++..++ +|++||
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 99999999999998 79999998765 4689999999999964 245889999999999996 899999
Q ss_pred cCCCCC-HHHHHHHHHHHHH
Q 040481 160 ALDSTN-VKSAFEIVIREIY 178 (222)
Q Consensus 160 a~~~~~-i~~~~~~i~~~~~ 178 (222)
|++|.| |+++|..+++.++
T Consensus 161 Ak~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 161 ALQSENSVRDIFHVATLACV 180 (182)
T ss_pred cCCCCCCHHHHHHHHHHHHh
Confidence 999998 9999999888544
No 26
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=1.2e-33 Score=214.48 Aligned_cols=165 Identities=39% Similarity=0.601 Sum_probs=146.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEE
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALI 94 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 94 (222)
..+||+++|++|||||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++|+
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 358999999999999999999999888777777766554 4566778888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 040481 95 VYDITRRTTFDSISRWLDELKTHSD-TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIV 173 (222)
Q Consensus 95 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 173 (222)
|||++++.+|+.+..|+..+..... ..+|+++|+||.|+.+.+.+..+++..++...+++++++||++|.|+.++|.++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l 162 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL 162 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 9999999999999999988876543 578999999999997767777778888888889999999999999999999999
Q ss_pred HHHHHHH
Q 040481 174 IREIYSN 180 (222)
Q Consensus 174 ~~~~~~~ 180 (222)
++.+.+.
T Consensus 163 ~~~l~~~ 169 (189)
T PTZ00369 163 VREIRKY 169 (189)
T ss_pred HHHHHHH
Confidence 9887654
No 27
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3.4e-33 Score=215.36 Aligned_cols=169 Identities=47% Similarity=0.854 Sum_probs=151.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEE-CCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEE
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEI-DGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALI 94 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 94 (222)
.+||+++|++|||||||+++|.+..+...+.++.+.++....+.+ ++..+.+++||++|++.+...+..+++.+|++|+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 479999999999999999999999888888888888887777766 4667889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 040481 95 VYDITRRTTFDSISRWLDELKTHSD-TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIV 173 (222)
Q Consensus 95 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 173 (222)
|||++++.+|+.+..|+..+..... ...|++||+||.|+.+...+..++...++..++++++++||++|.|++++|++|
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l 161 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL 161 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999998876543 457889999999998877888888999999999999999999999999999999
Q ss_pred HHHHHHHhhhh
Q 040481 174 IREIYSNVSRK 184 (222)
Q Consensus 174 ~~~~~~~~~~~ 184 (222)
++.+++.....
T Consensus 162 ~~~~~~~~~~~ 172 (211)
T cd04111 162 TQEIYERIKRG 172 (211)
T ss_pred HHHHHHHhhcC
Confidence 99888775443
No 28
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=1e-33 Score=211.97 Aligned_cols=160 Identities=31% Similarity=0.594 Sum_probs=143.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
+||+++|++++|||+|+.++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 7999999999999999999999999888888887655 445677888999999999999999999999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCcCC----------CCCHHHHHHHHHHcCC-eEEEEccCCCC
Q 040481 97 DITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDLESIR----------NVSTEEGKSLAEAEGL-FFMETSALDST 164 (222)
Q Consensus 97 d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~~sa~~~~ 164 (222)
|++++.||+.+ ..|+..+.... .++|++|||||+|+.+.+ .+..+++..+++..++ .|++|||++|.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 68999997765 468999999999996542 4788899999999998 59999999999
Q ss_pred CHHHHHHHHHHHHH
Q 040481 165 NVKSAFEIVIREIY 178 (222)
Q Consensus 165 ~i~~~~~~i~~~~~ 178 (222)
||+++|..+++.+.
T Consensus 160 nV~~~F~~~~~~~~ 173 (176)
T cd04133 160 NVKAVFDAAIKVVL 173 (176)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998763
No 29
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=1.9e-33 Score=210.36 Aligned_cols=164 Identities=35% Similarity=0.515 Sum_probs=146.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEE
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIV 95 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 95 (222)
.+||+++|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||.+.+..++..+++.+|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 47999999999999999999999998877788876444 44567788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 040481 96 YDITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVI 174 (222)
Q Consensus 96 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 174 (222)
||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..++...+++..+++|++|||++|.||+++|.+++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 99999999999999988887653 35799999999999987778888899999999999999999999999999999999
Q ss_pred HHHHHH
Q 040481 175 REIYSN 180 (222)
Q Consensus 175 ~~~~~~ 180 (222)
+.+...
T Consensus 161 ~~~~~~ 166 (172)
T cd04141 161 REIRRK 166 (172)
T ss_pred HHHHHh
Confidence 987753
No 30
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=3.1e-33 Score=207.85 Aligned_cols=163 Identities=50% Similarity=0.872 Sum_probs=149.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEE
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIV 95 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 95 (222)
.+||+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 57999999999999999999999988877788888888888888888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 040481 96 YDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIR 175 (222)
Q Consensus 96 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 175 (222)
||++++++|..+..|+..+......+.|+++|+||.|+.....+..+++..++...+++++++||++|.|++++|..|++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999999999999998776567899999999999877778888889999999999999999999999999999998
Q ss_pred HHH
Q 040481 176 EIY 178 (222)
Q Consensus 176 ~~~ 178 (222)
.+.
T Consensus 162 ~~~ 164 (166)
T cd01869 162 EIK 164 (166)
T ss_pred HHH
Confidence 775
No 31
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=2.2e-33 Score=216.72 Aligned_cols=164 Identities=30% Similarity=0.509 Sum_probs=140.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
+||+++|.++||||||+++|..+.+.. +.++.+.++....+ ..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999998864 46666655543332 4577899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc-------------------CCCCCHHHHHHHHHHcC-----
Q 040481 97 DITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLES-------------------IRNVSTEEGKSLAEAEG----- 152 (222)
Q Consensus 97 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~-------------------~~~~~~~~~~~~~~~~~----- 152 (222)
|++++++|+.+..|+..+.......+|++||+||+|+.+ .+.+..+++..+++..+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999888877766556789999999999975 57788899999999876
Q ss_pred ---------CeEEEEccCCCCCHHHHHHHHHHHHHHHhhhhc
Q 040481 153 ---------LFFMETSALDSTNVKSAFEIVIREIYSNVSRKV 185 (222)
Q Consensus 153 ---------~~~~~~sa~~~~~i~~~~~~i~~~~~~~~~~~~ 185 (222)
++|++|||++|.||+++|..+++.+++....+.
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~ 197 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQR 197 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 689999999999999999999998887665543
No 32
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=2.6e-33 Score=216.80 Aligned_cols=164 Identities=33% Similarity=0.552 Sum_probs=148.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECC-eEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDG-KEVKAQIWDTAGQERFRAVTSAYYRGAVGALIV 95 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 95 (222)
+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++ ..+.+++||++|++.+...+..+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 4899999999999999999999998888899998888888887754 578999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhcCC---CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 040481 96 YDITRRTTFDSISRWLDELKTHSD---TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEI 172 (222)
Q Consensus 96 ~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 172 (222)
||++++++|+.+..|+..+..... ...|+++|+||.|+.+.+.+..++...++...+++++++||++|.|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999877643 35688999999999877788888899999999999999999999999999999
Q ss_pred HHHHHHHH
Q 040481 173 VIREIYSN 180 (222)
Q Consensus 173 i~~~~~~~ 180 (222)
++..+...
T Consensus 161 l~~~l~~~ 168 (215)
T cd04109 161 LAAELLGV 168 (215)
T ss_pred HHHHHHhc
Confidence 99988764
No 33
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=2.1e-33 Score=207.87 Aligned_cols=160 Identities=42% Similarity=0.791 Sum_probs=147.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
++|+++|++|+|||||++++.++.+.+.+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 48999999999999999999999998888888888888788888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 040481 97 DITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIRE 176 (222)
Q Consensus 97 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~ 176 (222)
|++++.+|+.+..|+..+.......+|+++|+||.|+...+.+..+++..+++.++++|+++||++|.|++++|.+|++.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999999887766679999999999998878888899999999999999999999999999999999864
No 34
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=8.4e-33 Score=213.11 Aligned_cols=169 Identities=51% Similarity=0.902 Sum_probs=154.3
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
++.+||+|+|++++|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.+|++|
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 45689999999999999999999999888888888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 040481 94 IVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIV 173 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 173 (222)
+|||++++.+|+.+..|+..+.......+|+++|+||.|+...+.+..++..+++..++++++++||+++.||+++|.++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l 163 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999988877666678999999999998777888889999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 040481 174 IREIYSNVS 182 (222)
Q Consensus 174 ~~~~~~~~~ 182 (222)
++.++....
T Consensus 164 ~~~~~~~~~ 172 (210)
T PLN03108 164 AAKIYKKIQ 172 (210)
T ss_pred HHHHHHHhh
Confidence 999887654
No 35
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=3.7e-33 Score=206.48 Aligned_cols=161 Identities=39% Similarity=0.724 Sum_probs=153.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEE
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYD 97 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d 97 (222)
||+++|+++||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|++.+......++..+|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 040481 98 ITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177 (222)
Q Consensus 98 ~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~ 177 (222)
++++.+|+.+..|+..+........|++||+||.|+.+.+.+..++++.++..++++|+++||+++.||.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998876789999999999998889999999999999999999999999999999999999887
Q ss_pred H
Q 040481 178 Y 178 (222)
Q Consensus 178 ~ 178 (222)
+
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 5
No 36
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=5.8e-33 Score=206.29 Aligned_cols=162 Identities=46% Similarity=0.805 Sum_probs=147.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
+||+++|+++||||||+++|.+..+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999988888888887777777777788899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 040481 97 DITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIRE 176 (222)
Q Consensus 97 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~ 176 (222)
|++++.+|+.+..|+..+........|+++|+||+|+.+.+.+..++..+++...+++++++||++|.|+.++|++++..
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999987766678999999999998777777788888999999999999999999999999999886
Q ss_pred HH
Q 040481 177 IY 178 (222)
Q Consensus 177 ~~ 178 (222)
+.
T Consensus 162 ~~ 163 (165)
T cd01865 162 IC 163 (165)
T ss_pred HH
Confidence 54
No 37
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=5e-33 Score=209.36 Aligned_cols=166 Identities=40% Similarity=0.755 Sum_probs=149.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEEC----------CeEEEEEEEeCCCcchhhhhHHH
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEID----------GKEVKAQIWDTAGQERFRAVTSA 84 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~G~~~~~~~~~~ 84 (222)
+.+||+++|++|||||||++++.+..+...+.++.+.++....+.+. +..+.+.+||+||++.+...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 56899999999999999999999999888888888877776666654 45688999999999999999999
Q ss_pred hhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCC
Q 040481 85 YYRGAVGALIVYDITRRTTFDSISRWLDELKTHSD-TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDS 163 (222)
Q Consensus 85 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (222)
+++.+|++|+|||++++++|..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~ 162 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATG 162 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 99999999999999999999999999998876542 46899999999999877788888899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 040481 164 TNVKSAFEIVIREIYSN 180 (222)
Q Consensus 164 ~~i~~~~~~i~~~~~~~ 180 (222)
.|++++|+++++.++++
T Consensus 163 ~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 163 TNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999887754
No 38
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=4.3e-33 Score=209.32 Aligned_cols=160 Identities=31% Similarity=0.551 Sum_probs=142.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
+||+++|++|||||||++++.++.+...+.|+.+..+. ..+.+++..+.+++|||+|++.+..+...+++.+|++|+||
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 68999999999999999999999998888888765553 56778889999999999999999999999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCc------------CCCCCHHHHHHHHHHcCC-eEEEEccCC
Q 040481 97 DITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDLES------------IRNVSTEEGKSLAEAEGL-FFMETSALD 162 (222)
Q Consensus 97 d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~sa~~ 162 (222)
|++++.||+.+ ..|+..+.... ...|+++||||.||.+ .+.+..+++.+++...++ +|++|||++
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~ 159 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT 159 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence 99999999996 78999998765 4689999999999964 245888999999999997 799999999
Q ss_pred CCC-HHHHHHHHHHHHH
Q 040481 163 STN-VKSAFEIVIREIY 178 (222)
Q Consensus 163 ~~~-i~~~~~~i~~~~~ 178 (222)
|++ |+++|..+++..+
T Consensus 160 ~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 160 SEKSVRDIFHVATMACL 176 (178)
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 995 9999999988544
No 39
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-33 Score=197.63 Aligned_cols=172 Identities=46% Similarity=0.787 Sum_probs=163.5
Q ss_pred CCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCC
Q 040481 11 GGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAV 90 (222)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 90 (222)
...++.+|++++|+.|+|||.|++++..+.+......++|+++....+++.++.++++||||+|++.|.+..+.+|+.+.
T Consensus 4 EtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAA 83 (214)
T KOG0086|consen 4 ETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA 83 (214)
T ss_pred hhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcccc
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 040481 91 GALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAF 170 (222)
Q Consensus 91 ~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 170 (222)
+.++|||++++++|+.+..|+..++......+-+++++||.||.+.+++...++..|+.+..+.+.++||++|+||.+.|
T Consensus 84 GAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaF 163 (214)
T KOG0086|consen 84 GALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 163 (214)
T ss_pred ceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHH
Confidence 99999999999999999999999999988888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 040481 171 EIVIREIYSNVS 182 (222)
Q Consensus 171 ~~i~~~~~~~~~ 182 (222)
-.....++...+
T Consensus 164 l~c~~tIl~kIE 175 (214)
T KOG0086|consen 164 LKCARTILNKIE 175 (214)
T ss_pred HHHHHHHHHHHh
Confidence 888888777655
No 40
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=7e-33 Score=205.79 Aligned_cols=162 Identities=31% Similarity=0.643 Sum_probs=148.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
+||+++|++|||||||+++|.+..+...+.++.+.++....+..++..+.+++||+||++.+..++..+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999988888899888888888888889999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhcCC-----CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 040481 97 DITRRTTFDSISRWLDELKTHSD-----TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFE 171 (222)
Q Consensus 97 d~~~~~s~~~~~~~~~~i~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 171 (222)
|++++.+|+.+..|+..+..... ...|+++|+||+|+.+...+..++...++...+++++++||++|.|+.++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999877654 4689999999999976667778888888888899999999999999999999
Q ss_pred HHHHHHH
Q 040481 172 IVIREIY 178 (222)
Q Consensus 172 ~i~~~~~ 178 (222)
+|++.++
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9998775
No 41
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=8.5e-33 Score=205.24 Aligned_cols=163 Identities=67% Similarity=1.084 Sum_probs=150.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEE
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALI 94 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 94 (222)
..+||+++|+++||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.++++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 45899999999999999999999999888888888888888888888888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 040481 95 VYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVI 174 (222)
Q Consensus 95 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 174 (222)
|||++++.+|+.+.+|+..+......+.|+++|+||.|+...+.+..++...++...+++++++||++|.|++++|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999999887766789999999999987777888888889988899999999999999999999998
Q ss_pred HHH
Q 040481 175 REI 177 (222)
Q Consensus 175 ~~~ 177 (222)
..+
T Consensus 162 ~~i 164 (165)
T cd01868 162 TEI 164 (165)
T ss_pred HHh
Confidence 765
No 42
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=7.9e-33 Score=210.32 Aligned_cols=162 Identities=30% Similarity=0.541 Sum_probs=142.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEE
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIV 95 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 95 (222)
.+||+++|+.+||||||++++..+.+...+.++.+..+ ...+.+++..+.+++||++|++.+..++..+++.+|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 48999999999999999999999999888888877554 34456788899999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcC------------CCCCHHHHHHHHHHcC-CeEEEEccC
Q 040481 96 YDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDLESI------------RNVSTEEGKSLAEAEG-LFFMETSAL 161 (222)
Q Consensus 96 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~sa~ 161 (222)
||++++.+|+.+. .|+..+.... ..+|++||+||.||.+. ..+..+++..++..++ ++|+++||+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 9999999999996 6888887654 46899999999999653 2366778889999988 589999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 040481 162 DSTNVKSAFEIVIREIYS 179 (222)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~ 179 (222)
+|.||+++|.++++.+..
T Consensus 161 ~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999987753
No 43
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=1.6e-32 Score=204.47 Aligned_cols=166 Identities=55% Similarity=0.956 Sum_probs=151.8
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
.+.+||+++|+++||||||++++.+..+...+.++.+.++....+..++....+.+||+||++.+......+++.+|+++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 35689999999999999999999999888888888888888888888888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 040481 94 IVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIV 173 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 173 (222)
+|||++++.+|+.+..|+..+......++|+++|+||.|+.+...+..++++.++...++.++++||+++.|++++|.++
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~ 161 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT 161 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988766779999999999998767788888888999999999999999999999999999
Q ss_pred HHHHHH
Q 040481 174 IREIYS 179 (222)
Q Consensus 174 ~~~~~~ 179 (222)
++.+++
T Consensus 162 ~~~~~~ 167 (168)
T cd01866 162 AKEIYE 167 (168)
T ss_pred HHHHHh
Confidence 988764
No 44
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=3.7e-32 Score=206.93 Aligned_cols=164 Identities=33% Similarity=0.573 Sum_probs=143.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCC-CCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNP-HSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIV 95 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 95 (222)
+||+++|+++||||||+++|.++.+.. .+.++.+.++....+.+++..+.+.+||++|.+.+..++..++..+|++|+|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 489999999999999999999988764 5677777777777788899899999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcC----CCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 040481 96 YDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI----RNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFE 171 (222)
Q Consensus 96 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 171 (222)
||++++.+|+.+..|+..+.... .+.|+++|+||.|+.+. ..+..+++..++...+++++++||+++.|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999887653 46899999999998532 34555677788888899999999999999999999
Q ss_pred HHHHHHHHHh
Q 040481 172 IVIREIYSNV 181 (222)
Q Consensus 172 ~i~~~~~~~~ 181 (222)
++++.+....
T Consensus 160 ~i~~~~~~~~ 169 (193)
T cd04118 160 KVAEDFVSRA 169 (193)
T ss_pred HHHHHHHHhc
Confidence 9999887544
No 45
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=2.9e-32 Score=210.58 Aligned_cols=164 Identities=29% Similarity=0.506 Sum_probs=142.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
+||+|+|++|||||+|+++|..+.+...+.|+.+..+. ..+.+++..+.+.+||++|++.|...+..+++.+|++|+||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 69999999999999999999999998888898876654 56678899999999999999999999999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCcC------------CCCCHHHHHHHHHHcCC-eEEEEccCC
Q 040481 97 DITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDLESI------------RNVSTEEGKSLAEAEGL-FFMETSALD 162 (222)
Q Consensus 97 d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~ 162 (222)
|++++++|+.+ ..|...+.... ..+|++||+||+|+.+. ..+..++...+++..++ .|+||||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 99999999999 56777665544 56899999999999642 23677889999999995 899999999
Q ss_pred CCC-HHHHHHHHHHHHHHHhh
Q 040481 163 STN-VKSAFEIVIREIYSNVS 182 (222)
Q Consensus 163 ~~~-i~~~~~~i~~~~~~~~~ 182 (222)
+.+ |+++|..++...+....
T Consensus 160 ~~~~V~~~F~~~~~~~~~~~~ 180 (222)
T cd04173 160 SERSVRDVFHVATVASLGRGH 180 (222)
T ss_pred CCcCHHHHHHHHHHHHHhccC
Confidence 885 99999999987765443
No 46
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=1.6e-32 Score=207.02 Aligned_cols=163 Identities=31% Similarity=0.564 Sum_probs=143.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
+||+++|+.|||||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998888999998888888888998999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc-----CCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 040481 97 DITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLES-----IRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFE 171 (222)
Q Consensus 97 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 171 (222)
|++++.+|+.+..|+..+........| ++|+||+|+.. ......++..+++...+++++++||++|.|++++|.
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999998876555567 67899999852 111224567778888899999999999999999999
Q ss_pred HHHHHHHHH
Q 040481 172 IVIREIYSN 180 (222)
Q Consensus 172 ~i~~~~~~~ 180 (222)
++++.+++.
T Consensus 160 ~l~~~l~~~ 168 (182)
T cd04128 160 IVLAKAFDL 168 (182)
T ss_pred HHHHHHHhc
Confidence 999988753
No 47
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.5e-32 Score=202.80 Aligned_cols=162 Identities=50% Similarity=0.882 Sum_probs=146.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEE
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALI 94 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 94 (222)
+.+||+++|++|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 56899999999999999999999988887777888878888888888888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCC-eEEEEccCCCCCHHHHHHHH
Q 040481 95 VYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGL-FFMETSALDSTNVKSAFEIV 173 (222)
Q Consensus 95 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~i 173 (222)
|||++++.+|+.+..|+..+......++|+++|+||+|+...+....+.+..++...+. .++++||++|.|++++|.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999877667899999999999987777788888888888875 68999999999999999998
Q ss_pred HHH
Q 040481 174 IRE 176 (222)
Q Consensus 174 ~~~ 176 (222)
++.
T Consensus 162 ~~~ 164 (165)
T cd01864 162 ATE 164 (165)
T ss_pred HHh
Confidence 865
No 48
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=2.8e-32 Score=204.48 Aligned_cols=160 Identities=28% Similarity=0.494 Sum_probs=139.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEE
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIV 95 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 95 (222)
++||+++|++|||||||++++..+.+...+.|+.+..+. ..+.+++..+.+.+||++|++.+...+..+++.+|++|+|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 479999999999999999999999988888888765554 3566788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcC------------CCCCHHHHHHHHHHcC-CeEEEEccC
Q 040481 96 YDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDLESI------------RNVSTEEGKSLAEAEG-LFFMETSAL 161 (222)
Q Consensus 96 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~sa~ 161 (222)
||++++.+|+.+. .|+..+.... .++|+++|+||.|+.+. +.+..+++.+++...+ +.|+++||+
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 9999999999996 5988887654 46899999999998643 4577788888998887 689999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 040481 162 DSTNVKSAFEIVIREI 177 (222)
Q Consensus 162 ~~~~i~~~~~~i~~~~ 177 (222)
+|.|++++|+.++..+
T Consensus 159 tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 159 TQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999988754
No 49
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=4.9e-32 Score=209.95 Aligned_cols=165 Identities=29% Similarity=0.522 Sum_probs=146.6
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
...+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 67799999999999999999999999988888899888888777777888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 040481 94 IVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIV 173 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 173 (222)
+|||++++.+|+.+..|+..+.... ..+|+++|+||+|+.+ +.+..+++ .++...++.|+++||++|.|+.++|.+|
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l 167 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence 9999999999999999999998765 5689999999999964 33444444 6778888999999999999999999999
Q ss_pred HHHHHHHh
Q 040481 174 IREIYSNV 181 (222)
Q Consensus 174 ~~~~~~~~ 181 (222)
++.+++..
T Consensus 168 ~~~~~~~~ 175 (219)
T PLN03071 168 ARKLAGDP 175 (219)
T ss_pred HHHHHcCc
Confidence 99887553
No 50
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=4.1e-32 Score=200.78 Aligned_cols=160 Identities=51% Similarity=0.854 Sum_probs=147.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
+||+++|+++||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 48999999999999999999999988888888888888788888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 040481 97 DITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIRE 176 (222)
Q Consensus 97 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~ 176 (222)
|++++.+|..+..|+..+......++|+++|+||.|+.....+..+++..++...++.++++||+++.|+.++|.++++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998877766789999999999998777788888999999999999999999999999999998875
No 51
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=1.8e-31 Score=206.01 Aligned_cols=174 Identities=46% Similarity=0.750 Sum_probs=149.4
Q ss_pred CCCCCCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhh
Q 040481 7 EGGGGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYY 86 (222)
Q Consensus 7 ~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 86 (222)
+...++....+||+++|++|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.+||+||++.+..++..++
T Consensus 5 ~~~~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~ 83 (211)
T PLN03118 5 SGQSSGYDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYY 83 (211)
T ss_pred cccccccCcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHH
Confidence 33445666779999999999999999999998876 35567777788777888888889999999999999999999999
Q ss_pred cCCCEEEEEEECCChhhHHHHHH-HHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCC
Q 040481 87 RGAVGALIVYDITRRTTFDSISR-WLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDST 164 (222)
Q Consensus 87 ~~~d~vi~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (222)
+.+|++|+|||++++++|+.+.. |...+.... ....|+++|+||.|+.....+..++...++...++.|+++||+++.
T Consensus 84 ~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~ 163 (211)
T PLN03118 84 RNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRE 163 (211)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 99999999999999999999965 666665443 2567999999999998767777788888888899999999999999
Q ss_pred CHHHHHHHHHHHHHHHh
Q 040481 165 NVKSAFEIVIREIYSNV 181 (222)
Q Consensus 165 ~i~~~~~~i~~~~~~~~ 181 (222)
|++++|.+|...+.+..
T Consensus 164 ~v~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 164 NVEQCFEELALKIMEVP 180 (211)
T ss_pred CHHHHHHHHHHHHHhhh
Confidence 99999999999887653
No 52
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=4.5e-32 Score=200.76 Aligned_cols=160 Identities=37% Similarity=0.609 Sum_probs=140.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
+||+++|++|||||||++++..+.+...+.++.+ +.....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 6999999999999999999999888777777765 444566777888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 040481 97 DITRRTTFDSISRWLDELKTHSD-TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIR 175 (222)
Q Consensus 97 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 175 (222)
|++++.+|+.+..|+..+..... .++|+++|+||+|+.+.+.+..++...++..++++++++||++|.|+.++|.++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999988876543 57899999999999776667777778888888899999999999999999999987
Q ss_pred HH
Q 040481 176 EI 177 (222)
Q Consensus 176 ~~ 177 (222)
.+
T Consensus 161 ~~ 162 (163)
T cd04136 161 QI 162 (163)
T ss_pred hc
Confidence 54
No 53
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=1.1e-31 Score=198.84 Aligned_cols=163 Identities=60% Similarity=0.961 Sum_probs=149.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
+||+++|++++|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999887777788888888888888888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 040481 97 DITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIRE 176 (222)
Q Consensus 97 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~ 176 (222)
|++++.+++.+..|+..+.......+|+++|+||+|+.....+..+.+..++...+++++++|+++|.|++++|+.+++.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999888776789999999999998767778888888999999999999999999999999999988
Q ss_pred HHH
Q 040481 177 IYS 179 (222)
Q Consensus 177 ~~~ 179 (222)
+.+
T Consensus 161 ~~~ 163 (164)
T smart00175 161 ILK 163 (164)
T ss_pred Hhh
Confidence 764
No 54
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=8.5e-32 Score=199.72 Aligned_cols=161 Identities=35% Similarity=0.592 Sum_probs=141.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEE
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIV 95 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 95 (222)
++||+++|++|||||||++++..+.+...+.++++..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 36999999999999999999998887777777766444 35667788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 040481 96 YDITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVI 174 (222)
Q Consensus 96 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 174 (222)
||+++..+|+.+..|+..+.... ..+.|+++|+||+|+.+...+..++...+++.++++++++||++|.|++++|.+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999998887653 36789999999999987666777777888888899999999999999999999998
Q ss_pred HHH
Q 040481 175 REI 177 (222)
Q Consensus 175 ~~~ 177 (222)
+.+
T Consensus 160 ~~l 162 (164)
T cd04175 160 RQI 162 (164)
T ss_pred HHh
Confidence 755
No 55
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=1.1e-31 Score=203.25 Aligned_cols=165 Identities=30% Similarity=0.515 Sum_probs=140.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEEC-CeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEID-GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIV 95 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 95 (222)
+||+++|++|||||||+++|.++.+...+.++.+.++.. .+... +..+.+.+||+||++.+...+..+++.+|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 589999999999999999999999887777776665543 34454 6788899999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcC----CCCCHHHHHHHHHHcCC-eEEEEccCCCCCHHHH
Q 040481 96 YDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDLESI----RNVSTEEGKSLAEAEGL-FFMETSALDSTNVKSA 169 (222)
Q Consensus 96 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~Dl~~~----~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~ 169 (222)
||++++.+|+.+. .|+..+.... .+.|+++|+||.|+... +.+..+++.+++...++ +++++||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999995 5888776543 46899999999999643 35667888899999988 8999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 040481 170 FEIVIREIYSNVSR 183 (222)
Q Consensus 170 ~~~i~~~~~~~~~~ 183 (222)
|..+++.+.....+
T Consensus 159 f~~l~~~~~~~~~~ 172 (187)
T cd04132 159 FDTAIEEALKKEGK 172 (187)
T ss_pred HHHHHHHHHhhhhh
Confidence 99999988765443
No 56
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=1.8e-31 Score=199.20 Aligned_cols=162 Identities=36% Similarity=0.636 Sum_probs=143.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEE
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYD 97 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d 97 (222)
||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+++||+||++.+...+..+++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999988888998888887888888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCC--CCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 040481 98 ITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRN--VSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVI 174 (222)
Q Consensus 98 ~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 174 (222)
++++++|+.+..|+..+.... ....|+++|+||.|+.+... ...+++..++..++++++++||++|.|++++|..++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999876543 34578899999999965433 345667778888899999999999999999999999
Q ss_pred HHHHH
Q 040481 175 REIYS 179 (222)
Q Consensus 175 ~~~~~ 179 (222)
..+.+
T Consensus 162 ~~~~~ 166 (170)
T cd04108 162 ALTFE 166 (170)
T ss_pred HHHHH
Confidence 87764
No 57
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=1.2e-31 Score=198.31 Aligned_cols=159 Identities=34% Similarity=0.638 Sum_probs=143.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEEC--CeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEID--GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALI 94 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 94 (222)
+||+++|++++|||||++++.++.+...+.++.+.++....+.+. +..+.+++||+||++.+...+..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 489999999999999999999998888888888888777777776 778899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 040481 95 VYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVI 174 (222)
Q Consensus 95 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 174 (222)
|||++++++|+.+..|+..+.... .++|+++|+||.|+.....+..+++..++...+++++++||++|.|++++|++|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999887644 4689999999999987777888888899999999999999999999999999887
Q ss_pred HH
Q 040481 175 RE 176 (222)
Q Consensus 175 ~~ 176 (222)
..
T Consensus 160 ~~ 161 (162)
T cd04106 160 EK 161 (162)
T ss_pred Hh
Confidence 53
No 58
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=1.5e-31 Score=198.89 Aligned_cols=160 Identities=30% Similarity=0.597 Sum_probs=140.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|++.+...+..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 48999999999999999999988887778888887877777777888899999999999999888899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 040481 97 DITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIRE 176 (222)
Q Consensus 97 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~ 176 (222)
|++++.+|+.+..|+..+..... ++|+++|+||+|+.+ +.... ...+++...+++++++||++|.|++++|.+|++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVKA-KQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCCH-HHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 99999999999999999987764 799999999999973 33333 3456777788999999999999999999999988
Q ss_pred HHH
Q 040481 177 IYS 179 (222)
Q Consensus 177 ~~~ 179 (222)
+.+
T Consensus 158 ~~~ 160 (166)
T cd00877 158 LLG 160 (166)
T ss_pred HHh
Confidence 864
No 59
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=3.1e-31 Score=197.83 Aligned_cols=163 Identities=40% Similarity=0.719 Sum_probs=144.5
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEE
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 92 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 92 (222)
+...+||+++|+++||||||++++.++.+...+.++.+.++....+.+++..+.+++||+||++.+..++..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 34569999999999999999999999988887778888777777888899999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcC----CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcC-CeEEEEccCCCCCHH
Q 040481 93 LIVYDITRRTTFDSISRWLDELKTHS----DTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEG-LFFMETSALDSTNVK 167 (222)
Q Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~ 167 (222)
|+|||++++.+|+.+..|+..+.... ..++|+++|+||.|+. .+.+..+++.+++..++ ++++++||++|.|+.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 160 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA 160 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence 99999999999999999998776543 2568999999999987 45677788888998887 579999999999999
Q ss_pred HHHHHHHHH
Q 040481 168 SAFEIVIRE 176 (222)
Q Consensus 168 ~~~~~i~~~ 176 (222)
++|..+++.
T Consensus 161 ~~~~~~~~~ 169 (170)
T cd04116 161 AAFEEAVRR 169 (170)
T ss_pred HHHHHHHhh
Confidence 999998864
No 60
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=2.1e-31 Score=197.31 Aligned_cols=161 Identities=36% Similarity=0.577 Sum_probs=141.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEE
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIV 95 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 95 (222)
.+||+++|++|+|||||++++..+.+...+.++.+ +.....+.+++..+.+++||+||.+.+..++..+++.+|++|+|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 37999999999999999999999988777777654 45556777788888899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 040481 96 YDITRRTTFDSISRWLDELKTHSD-TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVI 174 (222)
Q Consensus 96 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 174 (222)
||++++.+|+.+..|+..+..... .++|+++|+||+|+.....+...+...++...+++++++||++|.|+.++|.+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999888876543 6789999999999976666777777888888889999999999999999999988
Q ss_pred HHH
Q 040481 175 REI 177 (222)
Q Consensus 175 ~~~ 177 (222)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 654
No 61
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=3.5e-31 Score=195.65 Aligned_cols=160 Identities=41% Similarity=0.746 Sum_probs=145.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
.||+++|+++||||||+++|++..+...+.++.+.++....+..++..+.+++||+||+..+...+..+++.+|++|+||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 38999999999999999999999888888888888888888888888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 040481 97 DITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIRE 176 (222)
Q Consensus 97 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~ 176 (222)
|++++.+|+.+..|+..+......+.|+++|+||.|+.+......++...++...+++++++||+++.|++++|.++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999998877665578999999999997667778888888888889999999999999999999998874
No 62
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=3e-31 Score=196.69 Aligned_cols=161 Identities=43% Similarity=0.651 Sum_probs=140.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
+||+++|++|||||||++++.+..+...+.++.+ +.....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 4899999999999999999999888777777655 333455667788899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 040481 97 DITRRTTFDSISRWLDELKTHSD-TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIR 175 (222)
Q Consensus 97 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 175 (222)
|++++++|+.+..|+..+..... ...|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+++++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 99999999999999888766533 46899999999999876677778888889889999999999999999999999987
Q ss_pred HHH
Q 040481 176 EIY 178 (222)
Q Consensus 176 ~~~ 178 (222)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 654
No 63
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=5.9e-31 Score=194.82 Aligned_cols=162 Identities=46% Similarity=0.819 Sum_probs=147.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEE
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIV 95 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 95 (222)
.+||+++|+++||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 37999999999999999999999998777778888778888888899999999999999999988899999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 040481 96 YDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIR 175 (222)
Q Consensus 96 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 175 (222)
+|++++.+|+.+..|+..+.......+|+++++||+|+........++...++...+++++++||++|.|+.++|+++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999988876677899999999999866777888888889998999999999999999999999988
Q ss_pred HH
Q 040481 176 EI 177 (222)
Q Consensus 176 ~~ 177 (222)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 65
No 64
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=4.1e-31 Score=197.29 Aligned_cols=162 Identities=43% Similarity=0.790 Sum_probs=145.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhh-hhHHHhhcCCCEEEE
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFR-AVTSAYYRGAVGALI 94 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~vi~ 94 (222)
.++|+++|++|||||||++++....+...+.++.+.++....+.+++..+.+.+||++|++.+. ..+..+++.+|++|+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5799999999999999999999988887778888888888888889989999999999998886 578888999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCC---CCCHHHHH
Q 040481 95 VYDITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALD---STNVKSAF 170 (222)
Q Consensus 95 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~---~~~i~~~~ 170 (222)
|||++++.+|..+..|+..+.... ...+|+++|+||+|+...+.+..+++..++...+++|+++||++ +.++.++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 999999999999999999887754 36799999999999988788888888899999999999999999 89999999
Q ss_pred HHHHHHH
Q 040481 171 EIVIREI 177 (222)
Q Consensus 171 ~~i~~~~ 177 (222)
..+++.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9888755
No 65
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=4.1e-31 Score=195.65 Aligned_cols=161 Identities=34% Similarity=0.618 Sum_probs=139.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
+||+++|++|||||||++++.+..+.+.+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999887777777676666666777888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 040481 97 DITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIRE 176 (222)
Q Consensus 97 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~ 176 (222)
|++++.+++.+..|+..+.... ..+|+++|+||.|+... ..++...++...+++++++||++|.|++++|+.+++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999987653 45899999999998532 1334556777778999999999999999999999988
Q ss_pred HHHHh
Q 040481 177 IYSNV 181 (222)
Q Consensus 177 ~~~~~ 181 (222)
+.+++
T Consensus 157 ~~~~~ 161 (161)
T cd04124 157 AVSYK 161 (161)
T ss_pred HHhcC
Confidence 87653
No 66
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=3.7e-31 Score=196.62 Aligned_cols=158 Identities=28% Similarity=0.444 Sum_probs=137.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
+||+++|++|||||||++++.++.+...+.++.+..+ ...+.++...+.+++||+||++.+..++..+++.+|++|+||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999988777777765433 444556777889999999999999988889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhcC---CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 040481 97 DITRRTTFDSISRWLDELKTHS---DTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIV 173 (222)
Q Consensus 97 d~~~~~s~~~~~~~~~~i~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 173 (222)
|++++++|+.+..|+..+.... ..++|+++|+||+|+...+.+..+++..++...++.++++||++|.|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 9999999999999988776643 2568999999999997766777778888888889999999999999999999998
Q ss_pred HH
Q 040481 174 IR 175 (222)
Q Consensus 174 ~~ 175 (222)
++
T Consensus 161 ~~ 162 (165)
T cd04140 161 LN 162 (165)
T ss_pred Hh
Confidence 75
No 67
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=2.9e-31 Score=198.83 Aligned_cols=158 Identities=31% Similarity=0.548 Sum_probs=137.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
+||+++|++|||||||+.++..+.+...+.++.+ +.....+.+++..+.+.+||++|++.+...+..+++.+|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 7999999999999999999999988888888764 343445667888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcC------------CCCCHHHHHHHHHHcCC-eEEEEccCC
Q 040481 97 DITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDLESI------------RNVSTEEGKSLAEAEGL-FFMETSALD 162 (222)
Q Consensus 97 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~ 162 (222)
|++++.+|+.+. .|+..+.... ..+|+++|+||.|+.+. ..+..+++..++..++. ++++|||++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999995 6888876654 46899999999999642 24778888999999884 899999999
Q ss_pred CCCHHHHHHHHHHH
Q 040481 163 STNVKSAFEIVIRE 176 (222)
Q Consensus 163 ~~~i~~~~~~i~~~ 176 (222)
|.|++++|+.+++.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999988763
No 68
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=2.9e-31 Score=201.42 Aligned_cols=160 Identities=31% Similarity=0.553 Sum_probs=137.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEE
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYD 97 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d 97 (222)
||+++|++|||||||+++|.++.+...+.++.+..+. ..+..++..+.+.+||++|++.+..++..+++.+|++|+|||
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 8999999999999999999999988877787765543 455667888899999999999998888899999999999999
Q ss_pred CCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcCC------------CCCHHHHHHHHHHcC-CeEEEEccCCC
Q 040481 98 ITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDLESIR------------NVSTEEGKSLAEAEG-LFFMETSALDS 163 (222)
Q Consensus 98 ~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~sa~~~ 163 (222)
++++.+|+.+. .|+..+.... .+.|+++|+||+|+.+.. .+..++...++...+ ++|++|||++|
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 159 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN 159 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence 99999999986 6998887654 468999999999996533 345667777887776 78999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 040481 164 TNVKSAFEIVIREIYS 179 (222)
Q Consensus 164 ~~i~~~~~~i~~~~~~ 179 (222)
.|++++|.++++.+..
T Consensus 160 ~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 160 RGVNEAFTEAARVALN 175 (189)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999988763
No 69
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=5.9e-31 Score=194.91 Aligned_cols=161 Identities=37% Similarity=0.563 Sum_probs=140.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEE
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIV 95 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 95 (222)
.+||+++|++++|||||++++.+..+...+.++.+.. ......+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 4799999999999999999999988776666665533 345566788888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 040481 96 YDITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVI 174 (222)
Q Consensus 96 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 174 (222)
||+++..+|+.+..|+..+.... ..++|+++|+||+|+.....+..++...++...+++++++||++|.|++++|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999998887653 35789999999999987666777788888888899999999999999999999998
Q ss_pred HHH
Q 040481 175 REI 177 (222)
Q Consensus 175 ~~~ 177 (222)
..+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 754
No 70
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=8.2e-31 Score=193.52 Aligned_cols=159 Identities=37% Similarity=0.624 Sum_probs=138.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
+||+++|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 6999999999999999999999888777777765443 455667888888999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 040481 97 DITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIR 175 (222)
Q Consensus 97 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 175 (222)
|+++..+|+.+..|+..+.... ..+.|+++|+||.|+.+ +.....++..++...+++++++||++|.|++++|+++++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR 159 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999988887654 35789999999999976 456667778888888999999999999999999999986
Q ss_pred HH
Q 040481 176 EI 177 (222)
Q Consensus 176 ~~ 177 (222)
.+
T Consensus 160 ~~ 161 (162)
T cd04138 160 EI 161 (162)
T ss_pred Hh
Confidence 53
No 71
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.8e-33 Score=195.92 Aligned_cols=200 Identities=36% Similarity=0.608 Sum_probs=174.5
Q ss_pred CCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEEC---------CeEEEEEEEeCCCcchhhhh
Q 040481 11 GGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEID---------GKEVKAQIWDTAGQERFRAV 81 (222)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~G~~~~~~~ 81 (222)
...++.||.+.+|++|+|||+|+.+++.+.+......+.++++-.+.+.++ +..+++++|||+|+++|.++
T Consensus 4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL 83 (219)
T KOG0081|consen 4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL 83 (219)
T ss_pred ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence 345677899999999999999999999999999999999999999888874 35688999999999999999
Q ss_pred HHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEcc
Q 040481 82 TSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSD-TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSA 160 (222)
Q Consensus 82 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (222)
+.+|++.+=+++++||+++.+||-++..|+..++.+.- ....+++++||+||.+.+.+..+++..+++++++|||++||
T Consensus 84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA 163 (219)
T KOG0081|consen 84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSA 163 (219)
T ss_pred HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecc
Confidence 99999999999999999999999999999999877654 34567888999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhhccCCcchhhhhccccceeecccCCCC
Q 040481 161 LDSTNVKSAFEIVIREIYSNVSRKVLNSDSYKAELSLNRVTLVKSETDGS 210 (222)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 210 (222)
-+|.||.+..+.++..++++.++-.-++.........++.+...-++.+.
T Consensus 164 ~tg~Nv~kave~LldlvM~Rie~~v~~s~~p~~~~~~~~g~~~~e~~~~~ 213 (219)
T KOG0081|consen 164 CTGTNVEKAVELLLDLVMKRIEQCVEKSEIPLLVTRSNCGHLDGEEPCER 213 (219)
T ss_pred ccCcCHHHHHHHHHHHHHHHHHHHHhhcccchhhhccccccCCCCCChhh
Confidence 99999999999999999999888776666666655555555555444433
No 72
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=4.7e-31 Score=201.36 Aligned_cols=165 Identities=17% Similarity=0.241 Sum_probs=137.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhh--------hHHHhhcC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRA--------VTSAYYRG 88 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~ 88 (222)
+||+|+|+++||||||++++.++.+...+.|+.+.++....+.+++..+.+++|||||...+.. .....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 4899999999999999999999998888888877676666677888889999999999654321 13345789
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHhcC---CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-HcCCeEEEEccCCCC
Q 040481 89 AVGALIVYDITRRTTFDSISRWLDELKTHS---DTTVARMLVGNKCDLESIRNVSTEEGKSLAE-AEGLFFMETSALDST 164 (222)
Q Consensus 89 ~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~ 164 (222)
+|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+...+.+..++...++. .++++|++|||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999998887654 4679999999999997766667766666654 568999999999999
Q ss_pred CHHHHHHHHHHHHHHHh
Q 040481 165 NVKSAFEIVIREIYSNV 181 (222)
Q Consensus 165 ~i~~~~~~i~~~~~~~~ 181 (222)
||+++|..++..++.+.
T Consensus 161 ~v~~lf~~i~~~~~~~~ 177 (198)
T cd04142 161 HILLLFKELLISATTRG 177 (198)
T ss_pred CHHHHHHHHHHHhhccC
Confidence 99999999998777443
No 73
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.98 E-value=1e-30 Score=199.42 Aligned_cols=156 Identities=28% Similarity=0.549 Sum_probs=139.8
Q ss_pred EcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCCh
Q 040481 22 IGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRR 101 (222)
Q Consensus 22 ~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~ 101 (222)
+|+++||||||+++++.+.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999888888888988888888888888899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHHHH
Q 040481 102 TTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSN 180 (222)
Q Consensus 102 ~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~ 180 (222)
.+|+.+..|+..+.... .++|+++|+||+|+.. +.+..+. ..++...++.|++|||++|.||.++|.+++..+.+.
T Consensus 81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999998765 4789999999999864 3444443 467888899999999999999999999999988764
No 74
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.98 E-value=1.5e-30 Score=192.82 Aligned_cols=160 Identities=31% Similarity=0.585 Sum_probs=140.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC--cCCCCCCCccceeEEEEEEEEC-CeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARN--EFNPHSKATIGVEFQTQSMEID-GKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
+||+++|++|||||||+++|... .+...+.++.+.++....+.++ +..+.+.+||+||++.+..++..++..+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 48999999999999999999865 5667788888878776666664 56789999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 040481 94 IVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIV 173 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 173 (222)
+|||++++.+|+.+..|+..+.... .+.|+++|+||+|+.+...+.......++...+++++++||+++.|+.++|+.+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9999999999999999999887764 568999999999998767777777777888888999999999999999999998
Q ss_pred HHHH
Q 040481 174 IREI 177 (222)
Q Consensus 174 ~~~~ 177 (222)
++.+
T Consensus 160 ~~~~ 163 (164)
T cd04101 160 ARAF 163 (164)
T ss_pred HHHh
Confidence 8764
No 75
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.98 E-value=1.9e-30 Score=191.53 Aligned_cols=161 Identities=39% Similarity=0.698 Sum_probs=144.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
+||+++|++|+|||||+++|.+..+...+.++.+.++....+...+..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 48999999999999999999999887776677666776677777777888999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 040481 97 DITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIRE 176 (222)
Q Consensus 97 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~ 176 (222)
|++++.+++.+..|+..+.......+|+++|+||+|+.....+..++..+++...+++++++|++++.|++++|+++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999988776689999999999998767777888888888899999999999999999999999876
Q ss_pred H
Q 040481 177 I 177 (222)
Q Consensus 177 ~ 177 (222)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 5
No 76
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.98 E-value=4e-30 Score=191.89 Aligned_cols=164 Identities=41% Similarity=0.737 Sum_probs=145.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
+||+++|+++||||||++++.+..+...+.++.+.++....+...+..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 48999999999999999999999887777788887887777888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhcC----CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcC-CeEEEEccCCCCCHHHHHH
Q 040481 97 DITRRTTFDSISRWLDELKTHS----DTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEG-LFFMETSALDSTNVKSAFE 171 (222)
Q Consensus 97 d~~~~~s~~~~~~~~~~i~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~ 171 (222)
|++++.+++.+..|...+.... ..++|+++|+||+|+........++...++...+ ++++++|+++|.|+.++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 9999999999988887765443 2478999999999998656677778888888887 8899999999999999999
Q ss_pred HHHHHHHHH
Q 040481 172 IVIREIYSN 180 (222)
Q Consensus 172 ~i~~~~~~~ 180 (222)
++++.+++.
T Consensus 161 ~i~~~~~~~ 169 (172)
T cd01862 161 TIARKALEQ 169 (172)
T ss_pred HHHHHHHhc
Confidence 999988765
No 77
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=2.3e-30 Score=196.93 Aligned_cols=158 Identities=27% Similarity=0.434 Sum_probs=128.9
Q ss_pred eEEEEEEcCCCCCHHHHHH-HHhcCc-----CCCCCCCccce-eEEEEE--------EEECCeEEEEEEEeCCCcchhhh
Q 040481 16 LFKIVIIGDSAVGKSNLLS-RYARNE-----FNPHSKATIGV-EFQTQS--------MEIDGKEVKAQIWDTAGQERFRA 80 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~G~~~~~~ 80 (222)
.+||+++|+++||||||+. ++.+.. +...+.||.+. +.+... +.+++..+.+++|||+|++..
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999995 555443 34556677642 322222 246888999999999998753
Q ss_pred hHHHhhcCCCEEEEEEECCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCc-------------------CCCCC
Q 040481 81 VTSAYYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDLES-------------------IRNVS 140 (222)
Q Consensus 81 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~Dl~~-------------------~~~~~ 140 (222)
....+++.+|++|+|||++++.+|+.+. .|+..+.... ...|+++|+||+||.+ .+.+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4556889999999999999999999996 6998887665 4689999999999964 36788
Q ss_pred HHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 040481 141 TEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIRE 176 (222)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~ 176 (222)
.++++.+++.++++|++|||++|.||+++|+.+++.
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 899999999999999999999999999999988763
No 78
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.97 E-value=2.5e-30 Score=193.58 Aligned_cols=158 Identities=34% Similarity=0.584 Sum_probs=136.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEEC
Q 040481 19 IVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDI 98 (222)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~ 98 (222)
|+|+|++|||||||++++.++.+...+.++....+ ...+.+++..+.+.+||+||++.+..++..+++.+|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 58999999999999999999998777777755443 44566788888999999999999998999999999999999999
Q ss_pred CChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcC------------CCCCHHHHHHHHHHcCC-eEEEEccCCCC
Q 040481 99 TRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDLESI------------RNVSTEEGKSLAEAEGL-FFMETSALDST 164 (222)
Q Consensus 99 ~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~~~ 164 (222)
+++++|+.+. .|+..+.... .++|+++|+||+|+... ..+..+++..++...+. +++++||++|.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999995 6999887754 46899999999998642 23677788889999986 89999999999
Q ss_pred CHHHHHHHHHHHHH
Q 040481 165 NVKSAFEIVIREIY 178 (222)
Q Consensus 165 ~i~~~~~~i~~~~~ 178 (222)
|++++|..+++.++
T Consensus 159 ~v~~lf~~l~~~~~ 172 (174)
T smart00174 159 GVREVFEEAIRAAL 172 (174)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998765
No 79
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.6e-30 Score=178.94 Aligned_cols=171 Identities=50% Similarity=0.859 Sum_probs=161.3
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCE
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 91 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 91 (222)
...+.+|-+|+|+.|+|||.|++.+....+-...+.++++++....+.+.+..+++++||++|+++|....+.+|+.+.+
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 34567899999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 040481 92 ALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFE 171 (222)
Q Consensus 92 vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 171 (222)
.+.|||++.+.++..+..|+...+........+++++||.||...+.+..+++++|+.+.+..|+++||++|.+|.+.|-
T Consensus 87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafl 166 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFL 166 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHH
Confidence 99999999999999999999999988888888899999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHhh
Q 040481 172 IVIREIYSNVS 182 (222)
Q Consensus 172 ~i~~~~~~~~~ 182 (222)
....+++....
T Consensus 167 e~akkiyqniq 177 (215)
T KOG0097|consen 167 ETAKKIYQNIQ 177 (215)
T ss_pred HHHHHHHHhhh
Confidence 88888887654
No 80
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=2.8e-30 Score=192.66 Aligned_cols=163 Identities=17% Similarity=0.214 Sum_probs=140.4
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFN-PHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 92 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 92 (222)
++.+||+++|++|||||||++++.++.+. ..+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.+|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 46799999999999999999999999988 78888888887777777888888899999999999988889999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCC-eEEEEccCCCCCHHHHHH
Q 040481 93 LIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGL-FFMETSALDSTNVKSAFE 171 (222)
Q Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~ 171 (222)
++|||++++.+|+.+..|+..+... .++|+++|+||.|+.+.......+..+++..+++ .++++||+++.|++++|+
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~ 159 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT 159 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence 9999999999999998998876432 3689999999999975444444455667777776 479999999999999999
Q ss_pred HHHHHHH
Q 040481 172 IVIREIY 178 (222)
Q Consensus 172 ~i~~~~~ 178 (222)
.+++.++
T Consensus 160 ~l~~~~~ 166 (169)
T cd01892 160 KLATAAQ 166 (169)
T ss_pred HHHHHhh
Confidence 9988765
No 81
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.97 E-value=7.6e-30 Score=188.55 Aligned_cols=159 Identities=52% Similarity=0.910 Sum_probs=142.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
+||+++|+++||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998887777788888888777778888899999999999999888899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 040481 97 DITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIR 175 (222)
Q Consensus 97 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 175 (222)
|++++.+|+.+..|+..+.... ..+.|+++|+||+|+.. .....++...++...+++++++||++|.|+.++++.+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 9999999999999999887765 36789999999999973 455667788899999999999999999999999998876
Q ss_pred H
Q 040481 176 E 176 (222)
Q Consensus 176 ~ 176 (222)
.
T Consensus 160 ~ 160 (161)
T cd01863 160 K 160 (161)
T ss_pred h
Confidence 5
No 82
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=3.2e-30 Score=191.46 Aligned_cols=160 Identities=38% Similarity=0.557 Sum_probs=136.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcch-hhhhHHHhhcCCCEEEEEE
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER-FRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~vi~v~ 96 (222)
||+++|++|||||||+++++...+...+.++....+ ...+.+++..+.+.+||+||+.. .......+++.+|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 589999999999999999998887666666654333 45566788888999999999885 3445677899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhcC--CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCC-CCHHHHHHHH
Q 040481 97 DITRRTTFDSISRWLDELKTHS--DTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDS-TNVKSAFEIV 173 (222)
Q Consensus 97 d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~-~~i~~~~~~i 173 (222)
|++++.+|+.+..|+..+.... ..+.|+++|+||+|+...+.+..+++..++...+++|+++||++| .|++++|..+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999998887754 356899999999999776778888888899999999999999999 5999999999
Q ss_pred HHHHH
Q 040481 174 IREIY 178 (222)
Q Consensus 174 ~~~~~ 178 (222)
++.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 98654
No 83
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.97 E-value=4.1e-30 Score=189.59 Aligned_cols=153 Identities=20% Similarity=0.361 Sum_probs=129.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
+||+++|++|||||||++++..+.+...+.++ +..+ ...+.+++..+.+.+||++|.+. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 48999999999999999999988877665544 3333 46678888888999999999975 24578899999999
Q ss_pred ECCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCC--cCCCCCHHHHHHHHHHc-CCeEEEEccCCCCCHHHHHHH
Q 040481 97 DITRRTTFDSISRWLDELKTHSD-TTVARMLVGNKCDLE--SIRNVSTEEGKSLAEAE-GLFFMETSALDSTNVKSAFEI 172 (222)
Q Consensus 97 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~~~ 172 (222)
|++++.+|+.+..|+..+..... ..+|+++|+||.|+. ..+.+..+++.++++.. ++.|++|||++|.||+++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999987654 568999999999985 35678888888898876 589999999999999999998
Q ss_pred HHHH
Q 040481 173 VIRE 176 (222)
Q Consensus 173 i~~~ 176 (222)
+++.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 8754
No 84
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.97 E-value=9e-30 Score=189.67 Aligned_cols=162 Identities=36% Similarity=0.559 Sum_probs=142.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEE
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIV 95 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 95 (222)
++||+++|++|||||||++++.++.+...+.++.+.. ....+.+++..+.+++||+||++.+..++..+++.++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 3689999999999999999999988877777776543 356667788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcC-CeEEEEccCCCCCHHHHHHHH
Q 040481 96 YDITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEG-LFFMETSALDSTNVKSAFEIV 173 (222)
Q Consensus 96 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~i 173 (222)
||++++++|+.+..|...+.... ..+.|+++++||.|+.+.+....++...++..++ ++++++||+++.|++++|.++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999988887643 3578999999999998777777777888888887 889999999999999999999
Q ss_pred HHHHH
Q 040481 174 IREIY 178 (222)
Q Consensus 174 ~~~~~ 178 (222)
+.+++
T Consensus 160 ~~~~~ 164 (168)
T cd04177 160 VRQII 164 (168)
T ss_pred HHHHh
Confidence 98765
No 85
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=1.7e-29 Score=188.16 Aligned_cols=164 Identities=42% Similarity=0.783 Sum_probs=145.9
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
...++|+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 35689999999999999999999988777777777777777777888888888999999999999988899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 040481 94 IVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIV 173 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 173 (222)
+|||+.++.+++.+..|+..+......+.|+++|+||.|+.+.+.+..+..+.+......+++++||++|.|++++|+.+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i 164 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDL 164 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999999998877766678999999999998777777777778888888899999999999999999999
Q ss_pred HHHH
Q 040481 174 IREI 177 (222)
Q Consensus 174 ~~~~ 177 (222)
.+.+
T Consensus 165 ~~~~ 168 (169)
T cd04114 165 ACRL 168 (169)
T ss_pred HHHh
Confidence 8754
No 86
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=6.7e-30 Score=200.85 Aligned_cols=161 Identities=24% Similarity=0.438 Sum_probs=139.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
+||+++|++|||||||+++++++.+...+.++.+ ++....+.+++..+.++|||++|++.+..++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999988877777765 555667778888999999999999999888888899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhc---------CCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH-cCCeEEEEccCCCCCH
Q 040481 97 DITRRTTFDSISRWLDELKTH---------SDTTVARMLVGNKCDLESIRNVSTEEGKSLAEA-EGLFFMETSALDSTNV 166 (222)
Q Consensus 97 d~~~~~s~~~~~~~~~~i~~~---------~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~i 166 (222)
|++++.+|+.+..|+..+... ...++|+++|+||+|+...+.+..+++.+++.. .++.++++||++|.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999998888653 225689999999999986667777777777654 4688999999999999
Q ss_pred HHHHHHHHHHHH
Q 040481 167 KSAFEIVIREIY 178 (222)
Q Consensus 167 ~~~~~~i~~~~~ 178 (222)
+++|++|+..+.
T Consensus 160 ~elf~~L~~~~~ 171 (247)
T cd04143 160 DEMFRALFSLAK 171 (247)
T ss_pred HHHHHHHHHHhc
Confidence 999999988553
No 87
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=1e-29 Score=197.30 Aligned_cols=164 Identities=28% Similarity=0.403 Sum_probs=139.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhc-CCCEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFN-PHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYR-GAVGALI 94 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~~d~vi~ 94 (222)
+||+++|++|||||||+++|..+.+. ..+.++.+.++....+.+++..+.+.+||++|.+. .....++. .+|++|+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 48999999999999999999888776 56666655567777788888889999999999982 23344566 8999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 040481 95 VYDITRRTTFDSISRWLDELKTHSD-TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIV 173 (222)
Q Consensus 95 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 173 (222)
|||++++.+|+.+..|+..+..... .++|+++|+||+|+...+.+..++...++...+++++++||+++.||+++|+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999998877543 578999999999998777788888888888889999999999999999999999
Q ss_pred HHHHHHHhh
Q 040481 174 IREIYSNVS 182 (222)
Q Consensus 174 ~~~~~~~~~ 182 (222)
+..+.....
T Consensus 159 ~~~~~~~~~ 167 (221)
T cd04148 159 VRQIRLRRD 167 (221)
T ss_pred HHHHHhhhc
Confidence 998875443
No 88
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=1.3e-29 Score=185.90 Aligned_cols=158 Identities=54% Similarity=0.923 Sum_probs=145.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
+||+++|+++||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++.+|++|+|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988887888888888888888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 040481 97 DITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVI 174 (222)
Q Consensus 97 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 174 (222)
|++++.+++.+..|+..+........|+++++||+|+........++.+.++...+++++++||+++.|+.++|.+|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 999999999999999999887767789999999999975567778888889998999999999999999999999875
No 89
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=1.1e-29 Score=190.06 Aligned_cols=159 Identities=32% Similarity=0.529 Sum_probs=136.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
+||+++|++|+|||||++++..+.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999988777777654 333445677888888999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcC------------CCCCHHHHHHHHHHcCC-eEEEEccCC
Q 040481 97 DITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDLESI------------RNVSTEEGKSLAEAEGL-FFMETSALD 162 (222)
Q Consensus 97 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~ 162 (222)
|++++.+|+.+. .|+..+... ..+.|+++|+||+|+.+. ..+..+++..++...++ +++++||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999995 688888765 567899999999998642 25667788888888886 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 040481 163 STNVKSAFEIVIREI 177 (222)
Q Consensus 163 ~~~i~~~~~~i~~~~ 177 (222)
|.|++++|+.+++.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998865
No 90
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=1.6e-29 Score=189.24 Aligned_cols=157 Identities=32% Similarity=0.566 Sum_probs=135.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
+||+++|++|+|||||++++.++.+...+.++. .+.....+.+++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999988877777764 4555556777888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCc------------CCCCCHHHHHHHHHHcCC-eEEEEccCC
Q 040481 97 DITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDLES------------IRNVSTEEGKSLAEAEGL-FFMETSALD 162 (222)
Q Consensus 97 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~sa~~ 162 (222)
|++++.+|+.+. .|+..+.... .++|+++|+||.|+.. .+.+..+++..++...+. .++++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999984 6888887543 4689999999999863 356777888999999887 899999999
Q ss_pred CCCHHHHHHHHHH
Q 040481 163 STNVKSAFEIVIR 175 (222)
Q Consensus 163 ~~~i~~~~~~i~~ 175 (222)
|.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999987764
No 91
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=1.8e-28 Score=181.45 Aligned_cols=161 Identities=37% Similarity=0.589 Sum_probs=139.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
+||+++|++|||||||+++++...+...+.++.+.. ......+++..+.+.+||+||+..+...+..+++.+|++++||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 489999999999999999999988877766665433 3455667888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 040481 97 DITRRTTFDSISRWLDELKTHSD-TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIR 175 (222)
Q Consensus 97 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 175 (222)
|+.++.+|..+..|+..+..... .++|+++|+||+|+.+.......+...++..++++++++||++|.|+.++|.++++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 99999999999999888877643 57999999999999765556667777888888899999999999999999999987
Q ss_pred HHH
Q 040481 176 EIY 178 (222)
Q Consensus 176 ~~~ 178 (222)
.+.
T Consensus 160 ~~~ 162 (164)
T cd04139 160 EIR 162 (164)
T ss_pred HHH
Confidence 664
No 92
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=1.1e-28 Score=181.72 Aligned_cols=158 Identities=39% Similarity=0.650 Sum_probs=139.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEE
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYD 97 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d 97 (222)
||+++|++|||||||+++|++..+...+.++.. +.....+..++..+.+.+||+||+..+...+..+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998887666666655 5555666677778889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 040481 98 ITRRTTFDSISRWLDELKTHSD-TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIRE 176 (222)
Q Consensus 98 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~ 176 (222)
++++++++.+..|+..+..... ...|+++|+||+|+........+++..++...+++++++|++++.|++++|++|++.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999999888877665 678999999999998767778888888999889999999999999999999998865
No 93
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.96 E-value=6e-28 Score=181.71 Aligned_cols=163 Identities=37% Similarity=0.573 Sum_probs=139.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
.||+++|++|+|||||++++.+..+...+.++....+ ...+..++..+.+++||+||++.+...+..++..++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999887666666654333 455566777888999999999999989999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 040481 97 DITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIR 175 (222)
Q Consensus 97 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 175 (222)
|+++..+++.+..|+..+.... ..+.|+++|+||+|+...+.+..++...++..++++++++||+++.|+.++|.++.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999999887776643 356899999999999866666777777788888899999999999999999999998
Q ss_pred HHHHH
Q 040481 176 EIYSN 180 (222)
Q Consensus 176 ~~~~~ 180 (222)
.+...
T Consensus 161 ~~~~~ 165 (180)
T cd04137 161 EIEKV 165 (180)
T ss_pred HHHHh
Confidence 76543
No 94
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.96 E-value=3e-28 Score=183.95 Aligned_cols=165 Identities=22% Similarity=0.341 Sum_probs=131.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEE-CCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEE
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEI-DGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALI 94 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 94 (222)
.+||+++|++|||||||++++....+... .++.+.+.....+.. ++..+.+.+||+||++.+...+..+++.+|++|+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 48999999999999999999998876543 566565555444443 4467889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH------cCCeEEEEccCCCCCHH
Q 040481 95 VYDITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLAEA------EGLFFMETSALDSTNVK 167 (222)
Q Consensus 95 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~sa~~~~~i~ 167 (222)
|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ....++...+... .+++++++||++|.|++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 159 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ 159 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cCCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence 999999999999888887776543 35689999999999864 2334444444321 13568999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 040481 168 SAFEIVIREIYSNVSR 183 (222)
Q Consensus 168 ~~~~~i~~~~~~~~~~ 183 (222)
++|++|++.+.+.+..
T Consensus 160 ~l~~~l~~~l~~~~~~ 175 (183)
T cd04152 160 EGLEKLYEMILKRRKM 175 (183)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999988766544
No 95
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=5.6e-28 Score=184.67 Aligned_cols=160 Identities=28% Similarity=0.453 Sum_probs=133.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEE
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYD 97 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d 97 (222)
||+++|++|||||||+++|++..+...+.++.. +.....+.+.+..+.+++||+||+..+..++..++..+|++|+|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999888766666643 4455567777878899999999999998888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCc-CCCCCHHHHHHHHH-HcCCeEEEEccCCCCCHHHHHHHHH
Q 040481 98 ITRRTTFDSISRWLDELKTHSD-TTVARMLVGNKCDLES-IRNVSTEEGKSLAE-AEGLFFMETSALDSTNVKSAFEIVI 174 (222)
Q Consensus 98 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~i~~~~~~i~ 174 (222)
++++.+|+.+..|+..+..... .++|+++|+||+|+.. ...+..+...+... ..+++++++||++|.|++++|++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999988877654 5799999999999965 34555555544443 4567899999999999999999999
Q ss_pred HHHH
Q 040481 175 REIY 178 (222)
Q Consensus 175 ~~~~ 178 (222)
+.+.
T Consensus 160 ~~~~ 163 (198)
T cd04147 160 RQAN 163 (198)
T ss_pred HHhh
Confidence 8765
No 96
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=2.8e-30 Score=177.02 Aligned_cols=163 Identities=45% Similarity=0.740 Sum_probs=150.7
Q ss_pred EEcCCCCCHHHHHHHHhcCcC-CCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECC
Q 040481 21 IIGDSAVGKSNLLSRYARNEF-NPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDIT 99 (222)
Q Consensus 21 i~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~ 99 (222)
++|++++|||.|+-++..+.+ ......+.++++-.+.+.+++..+++++|||+|+++|.+.+.++|+.+|+++++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 689999999999998888776 3456688899999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHHH
Q 040481 100 RRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYS 179 (222)
Q Consensus 100 ~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~ 179 (222)
++.||++...|+.++..+....+.+.+++||+|+..++.+..++.+.+++.+++||+++||++|.|++..|-.|.+.+..
T Consensus 82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k 161 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKK 161 (192)
T ss_pred cchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHH
Confidence 99999999999999999988888999999999998889999999999999999999999999999999999988887776
Q ss_pred Hhhh
Q 040481 180 NVSR 183 (222)
Q Consensus 180 ~~~~ 183 (222)
....
T Consensus 162 ~~~~ 165 (192)
T KOG0083|consen 162 LKMG 165 (192)
T ss_pred hccC
Confidence 5433
No 97
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.96 E-value=2.3e-28 Score=182.12 Aligned_cols=154 Identities=20% Similarity=0.353 Sum_probs=122.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEE
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALI 94 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 94 (222)
..++|+++|+++||||||+++|....+. .+.|+.+.++. .+.. ..+.+++||+||++.+...+..+++.+|++|+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 3589999999999999999999877654 34566665543 2323 45789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH-----cCCeEEEEccCCCCCHHH
Q 040481 95 VYDITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLAEA-----EGLFFMETSALDSTNVKS 168 (222)
Q Consensus 95 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~ 168 (222)
|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+ .+..+++..+... ..+.++++||++|.|+++
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~ 160 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence 999999999999988776665432 35689999999999864 3455666555432 234689999999999999
Q ss_pred HHHHHHH
Q 040481 169 AFEIVIR 175 (222)
Q Consensus 169 ~~~~i~~ 175 (222)
+|.+|.+
T Consensus 161 ~~~~l~~ 167 (168)
T cd04149 161 GLTWLSS 167 (168)
T ss_pred HHHHHhc
Confidence 9999865
No 98
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=3.7e-28 Score=183.05 Aligned_cols=159 Identities=19% Similarity=0.342 Sum_probs=123.1
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
...+||+++|+++||||||++++..+.+. .+.|+.+.++. .+.+ ..+.+++||+||++.+..++..+++.+|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 34589999999999999999999877664 34566665443 3333 3577899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhc-CCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcC-----CeEEEEccCCCCCHH
Q 040481 94 IVYDITRRTTFDSISRWLDELKTH-SDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEG-----LFFMETSALDSTNVK 167 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~ 167 (222)
+|||++++.+++.+..++..+... ....+|++||+||.|+.+. ...++..+...... +.++++||++|+||.
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 999999999999888777666443 2256899999999999753 33333333322111 246789999999999
Q ss_pred HHHHHHHHHHHH
Q 040481 168 SAFEIVIREIYS 179 (222)
Q Consensus 168 ~~~~~i~~~~~~ 179 (222)
++|++|++.+.+
T Consensus 168 e~~~~l~~~~~~ 179 (181)
T PLN00223 168 EGLDWLSNNIAN 179 (181)
T ss_pred HHHHHHHHHHhh
Confidence 999999887764
No 99
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.96 E-value=9.1e-28 Score=181.93 Aligned_cols=163 Identities=33% Similarity=0.533 Sum_probs=135.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
.||+++|++|+|||||++++..+.+...+.++....+ ...+.+++..+.+.+||++|++.+......++..+|++++||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 4899999999999999999998877666666544333 345667777888999999999888777777889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCc----------CCCCCHHHHHHHHHHcCC-eEEEEccCCCC
Q 040481 97 DITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDLES----------IRNVSTEEGKSLAEAEGL-FFMETSALDST 164 (222)
Q Consensus 97 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~Dl~~----------~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~ 164 (222)
|+++.++|+.+. .|+..+....+ .+|+++|+||.|+.+ .+.+..++...++...++ +|++|||++|.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999999996 69988876543 599999999999853 234556778888988885 79999999999
Q ss_pred CHHHHHHHHHHHHHHHh
Q 040481 165 NVKSAFEIVIREIYSNV 181 (222)
Q Consensus 165 ~i~~~~~~i~~~~~~~~ 181 (222)
||+++|+++.+.++..+
T Consensus 160 ~v~~~f~~l~~~~~~~~ 176 (187)
T cd04129 160 GVDDVFEAATRAALLVR 176 (187)
T ss_pred CHHHHHHHHHHHHhccc
Confidence 99999999998776543
No 100
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.96 E-value=4.9e-28 Score=180.50 Aligned_cols=156 Identities=22% Similarity=0.401 Sum_probs=125.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEE
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYD 97 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d 97 (222)
||+++|+++||||||+++|.+..+.. +.+|.+..+. .+.+ ..+.+++||+||+..+...+..+++.+|+++||||
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999886543 5566554443 3333 35778899999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcC------CeEEEEccCCCCCHHHHH
Q 040481 98 ITRRTTFDSISRWLDELKTHSD-TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEG------LFFMETSALDSTNVKSAF 170 (222)
Q Consensus 98 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~sa~~~~~i~~~~ 170 (222)
++++.+|+.+..|+..+..... .+.|++||+||+|+.+ .+..+++.+++...+ +.++++||++|.||.++|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 9999999999998888865432 4589999999999964 356666666654322 368899999999999999
Q ss_pred HHHHHHHHHH
Q 040481 171 EIVIREIYSN 180 (222)
Q Consensus 171 ~~i~~~~~~~ 180 (222)
++|++.+.+.
T Consensus 154 ~~l~~~~~~~ 163 (169)
T cd04158 154 DWLSRQLVAA 163 (169)
T ss_pred HHHHHHHhhc
Confidence 9998876654
No 101
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.96 E-value=1.1e-27 Score=179.30 Aligned_cols=159 Identities=33% Similarity=0.568 Sum_probs=133.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
.||+++|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..++..+|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 4899999999999999999999988877777766444 345667888889999999999999888888899999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcC------------CCCCHHHHHHHHHHcCC-eEEEEccCC
Q 040481 97 DITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDLESI------------RNVSTEEGKSLAEAEGL-FFMETSALD 162 (222)
Q Consensus 97 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~ 162 (222)
|++++++|+.+. .|+..+.... .+.|+++|+||.|+.+. ..+...+..+++...+. .+++|||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999985 5888776643 46899999999998542 23445667777877764 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 040481 163 STNVKSAFEIVIREI 177 (222)
Q Consensus 163 ~~~i~~~~~~i~~~~ 177 (222)
|.|++++|.++++.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999988654
No 102
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.96 E-value=6.6e-29 Score=184.36 Aligned_cols=153 Identities=22% Similarity=0.313 Sum_probs=125.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEE
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYD 97 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d 97 (222)
.|+++|++|||||||+++|.+..+...+.|+.+... ..++...+.+.+||+||++.+...+..+++.+|++|+|||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 379999999999999999999877777777776542 2344556889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCH----HHHHHHHHHcCCeEEEEccCC------CCCHH
Q 040481 98 ITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVST----EEGKSLAEAEGLFFMETSALD------STNVK 167 (222)
Q Consensus 98 ~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~sa~~------~~~i~ 167 (222)
.+++.+|..+..|+..+.... .++|+++|+||.|+.....+.. ..+..++...++.++++||++ ++||+
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~ 155 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence 999999999988888876544 5789999999999975443221 123455566688899999988 99999
Q ss_pred HHHHHHHH
Q 040481 168 SAFEIVIR 175 (222)
Q Consensus 168 ~~~~~i~~ 175 (222)
++|+.++.
T Consensus 156 ~~~~~~~~ 163 (164)
T cd04162 156 DLLSQLIN 163 (164)
T ss_pred HHHHHHhc
Confidence 99998764
No 103
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.96 E-value=6.3e-28 Score=182.79 Aligned_cols=166 Identities=38% Similarity=0.557 Sum_probs=151.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEE
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALI 94 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 94 (222)
...||+++|.+|+|||+|..++....+.+.|.|++. +.+...+.+++..+.+.|+||+|++++..+...++..+|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 357999999999999999999999999999999977 6677778888999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 040481 95 VYDITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIV 173 (222)
Q Consensus 95 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 173 (222)
||+++++.||+.+..++..+.+.. ...+|+++||||+|+...+.+..++...++..++++|+|+||+.+.+++++|..+
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 999999999999999998884443 3568999999999999889999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 040481 174 IREIYSNV 181 (222)
Q Consensus 174 ~~~~~~~~ 181 (222)
+..+...+
T Consensus 161 ~r~~~~~~ 168 (196)
T KOG0395|consen 161 VREIRLPR 168 (196)
T ss_pred HHHHHhhh
Confidence 98776633
No 104
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=1.3e-27 Score=178.09 Aligned_cols=157 Identities=35% Similarity=0.608 Sum_probs=131.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
+||+++|++|||||||+++|.+..+...+.++.. +.....+..++..+.+++||+||++.+.......++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 5899999999999999999999988666666644 444455667788899999999999988888888889999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCcCC-----------CCCHHHHHHHHHHcCC-eEEEEccCCC
Q 040481 97 DITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDLESIR-----------NVSTEEGKSLAEAEGL-FFMETSALDS 163 (222)
Q Consensus 97 d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~sa~~~ 163 (222)
|++++.+|... ..|+..+.... ...|+++|+||+|+.+.. .+..++...++...++ +++++||++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 99999998887 45777776654 378999999999986543 3456777888888887 8999999999
Q ss_pred CCHHHHHHHHHH
Q 040481 164 TNVKSAFEIVIR 175 (222)
Q Consensus 164 ~~i~~~~~~i~~ 175 (222)
.|+.++|+++++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999998875
No 105
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.96 E-value=1.5e-28 Score=181.61 Aligned_cols=152 Identities=21% Similarity=0.388 Sum_probs=117.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
+||+++|.++||||||++++..+.+. .+.|+.+..+. .+.+ ..+.+.+||+||++.+...+..+++.+|++||||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 48999999999999999999877765 35666665543 2333 3577899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhc-CCCCCcEEEEEeCCCCCcCCCCCHHHH-HHHHH----HcCCeEEEEccCCCCCHHHHH
Q 040481 97 DITRRTTFDSISRWLDELKTH-SDTTVARMLVGNKCDLESIRNVSTEEG-KSLAE----AEGLFFMETSALDSTNVKSAF 170 (222)
Q Consensus 97 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~-~~~~~----~~~~~~~~~sa~~~~~i~~~~ 170 (222)
|++++.+|+.+..|+..+... .....|+++++||.|+.+. ...++. ..+.. ...+.++++||++|.|++++|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 999999999998877766433 2246899999999999642 222222 22211 123457899999999999999
Q ss_pred HHHHH
Q 040481 171 EIVIR 175 (222)
Q Consensus 171 ~~i~~ 175 (222)
++|.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 98864
No 106
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=2.3e-27 Score=180.90 Aligned_cols=148 Identities=21% Similarity=0.389 Sum_probs=126.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEEC-----CeEEEEEEEeCCCcchhhhhHHHhhcCCCE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEID-----GKEVKAQIWDTAGQERFRAVTSAYYRGAVG 91 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 91 (222)
+||+++|+++||||||++++.++.+...+.+|++.++....+.++ +..+.+++||++|++.+..++..+|+.+|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999888888888877777777664 467889999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcC-------------------CCCCcEEEEEeCCCCCcCCCCCHHH----HHHHH
Q 040481 92 ALIVYDITRRTTFDSISRWLDELKTHS-------------------DTTVARMLVGNKCDLESIRNVSTEE----GKSLA 148 (222)
Q Consensus 92 vi~v~d~~~~~s~~~~~~~~~~i~~~~-------------------~~~~p~iiv~nK~Dl~~~~~~~~~~----~~~~~ 148 (222)
+|+|||++++.||+.+..|+..+.... ...+|++|||||.|+.+.+.+..+. ...++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999986632 2468999999999997665555442 45678
Q ss_pred HHcCCeEEEEccCCCC
Q 040481 149 EAEGLFFMETSALDST 164 (222)
Q Consensus 149 ~~~~~~~~~~sa~~~~ 164 (222)
.+.+++.++.++.++.
T Consensus 161 ~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 161 EQGNAEEINLNCTNGR 176 (202)
T ss_pred HhcCCceEEEecCCcc
Confidence 8899999988888653
No 107
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.96 E-value=1.3e-27 Score=179.26 Aligned_cols=155 Identities=20% Similarity=0.350 Sum_probs=121.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEE
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIV 95 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 95 (222)
.+||+++|+++||||||++++..+.+. .+.|+.+.++. .+.+ ..+.+++||+||+..+...+..+++.+|++|+|
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v 87 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV 87 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 589999999999999999999877663 35566665543 3333 357789999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-----HcCCeEEEEccCCCCCHHHH
Q 040481 96 YDITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLAE-----AEGLFFMETSALDSTNVKSA 169 (222)
Q Consensus 96 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~ 169 (222)
||++++.+++....|+..+.... ..++|++||+||.|+.+. ...+++.+... ...+.++++||++|.|+.++
T Consensus 88 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 165 (175)
T smart00177 88 VDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA--MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEG 165 (175)
T ss_pred EECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHH
Confidence 99999999999988887765432 256899999999999643 23333322221 12345779999999999999
Q ss_pred HHHHHHHH
Q 040481 170 FEIVIREI 177 (222)
Q Consensus 170 ~~~i~~~~ 177 (222)
|++|.+.+
T Consensus 166 ~~~l~~~~ 173 (175)
T smart00177 166 LTWLSNNL 173 (175)
T ss_pred HHHHHHHh
Confidence 99998764
No 108
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=2.6e-27 Score=178.65 Aligned_cols=158 Identities=22% Similarity=0.369 Sum_probs=121.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEE
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIV 95 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 95 (222)
.+||+++|+++||||||++++..+.+.. +.|+.+.++. .+.. ..+.+++||+||++.+...+..+++.+|++|+|
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v 91 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV 91 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 4899999999999999999998776654 4566665443 3333 457789999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhc-CCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-----HcCCeEEEEccCCCCCHHHH
Q 040481 96 YDITRRTTFDSISRWLDELKTH-SDTTVARMLVGNKCDLESIRNVSTEEGKSLAE-----AEGLFFMETSALDSTNVKSA 169 (222)
Q Consensus 96 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~ 169 (222)
||++++.+|+.+..++..+... .....|++||+||.|+.+. ...+++..... ...+.++++||++|.|++++
T Consensus 92 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~ 169 (182)
T PTZ00133 92 VDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEG 169 (182)
T ss_pred EeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHH
Confidence 9999999999988777666433 2245799999999998642 23333222211 12235779999999999999
Q ss_pred HHHHHHHHHHH
Q 040481 170 FEIVIREIYSN 180 (222)
Q Consensus 170 ~~~i~~~~~~~ 180 (222)
|++|.+.+.+.
T Consensus 170 ~~~l~~~i~~~ 180 (182)
T PTZ00133 170 LDWLSANIKKS 180 (182)
T ss_pred HHHHHHHHHHh
Confidence 99998876643
No 109
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=2e-27 Score=177.87 Aligned_cols=157 Identities=24% Similarity=0.371 Sum_probs=123.5
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCE
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 91 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 91 (222)
++...++|+++|+++||||||+++|.+..+ ..+.++.+ +....+.++ .+.+.+||+||++.+...+..+++.+|+
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g--~~~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 84 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLG--FQIKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDA 84 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccc--cceEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence 445668999999999999999999998744 33445554 333444444 4678999999999998899999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhc-CCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-----HcCCeEEEEccCCCCC
Q 040481 92 ALIVYDITRRTTFDSISRWLDELKTH-SDTTVARMLVGNKCDLESIRNVSTEEGKSLAE-----AEGLFFMETSALDSTN 165 (222)
Q Consensus 92 vi~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~ 165 (222)
+++|||++++.+|.....|+..+... ...+.|+++|+||+|+.+.. ..+++..+.. ..+++++++||++|.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 162 (173)
T cd04154 85 LIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEG 162 (173)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcC
Confidence 99999999999999988888776543 23568999999999997532 4444444442 2457899999999999
Q ss_pred HHHHHHHHHH
Q 040481 166 VKSAFEIVIR 175 (222)
Q Consensus 166 i~~~~~~i~~ 175 (222)
++++|++++.
T Consensus 163 i~~l~~~l~~ 172 (173)
T cd04154 163 LLQGIDWLVD 172 (173)
T ss_pred HHHHHHHHhc
Confidence 9999998864
No 110
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=9.7e-27 Score=180.06 Aligned_cols=166 Identities=28% Similarity=0.527 Sum_probs=143.3
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCE
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 91 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 91 (222)
.....+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|++.+...+..++..+++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 44556899999999999999999988888888888998888887777778889999999999999998889999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 040481 92 ALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFE 171 (222)
Q Consensus 92 vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 171 (222)
+|+|||++++.+|..+..|+..+.... ..+|+++++||.|+.+ .....+ ...++...++.++++||++|.|+++.|.
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~~f~ 161 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKD-RQVKAR-QITFHRKKNLQYYDISAKSNYNFEKPFL 161 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCcc-ccCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999999887654 4589999999999864 233333 3457777889999999999999999999
Q ss_pred HHHHHHHHH
Q 040481 172 IVIREIYSN 180 (222)
Q Consensus 172 ~i~~~~~~~ 180 (222)
+|++.+...
T Consensus 162 ~ia~~l~~~ 170 (215)
T PTZ00132 162 WLARRLTND 170 (215)
T ss_pred HHHHHHhhc
Confidence 999987754
No 111
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=3e-27 Score=175.76 Aligned_cols=160 Identities=29% Similarity=0.356 Sum_probs=124.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
+||+++|+++||||||+++|.++.+...+.++ ... ......+++..+.+.+||+||.+.+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPE-ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccc-eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 48999999999999999999998876553332 222 2233445667789999999999888777788889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC--CHHHHHHHHHHcC--CeEEEEccCCCCCHHHHHH
Q 040481 97 DITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDLESIRNV--STEEGKSLAEAEG--LFFMETSALDSTNVKSAFE 171 (222)
Q Consensus 97 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~sa~~~~~i~~~~~ 171 (222)
|++++.+|+.+. .|+..+.... .+.|+++|+||+|+.+.... ..++...++..+. .+++++||+++.|++++|.
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999985 6888777654 47899999999999764432 1233333333332 4799999999999999999
Q ss_pred HHHHHHHH
Q 040481 172 IVIREIYS 179 (222)
Q Consensus 172 ~i~~~~~~ 179 (222)
.+.+.+.+
T Consensus 158 ~~~~~~~~ 165 (166)
T cd01893 158 YAQKAVLH 165 (166)
T ss_pred HHHHHhcC
Confidence 98887654
No 112
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.95 E-value=3.6e-29 Score=179.74 Aligned_cols=174 Identities=30% Similarity=0.541 Sum_probs=161.5
Q ss_pred CCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCC
Q 040481 11 GGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAV 90 (222)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 90 (222)
..-+..+|++|+|..++||||+|++++.+-+...+..++++++....+.++++.+...+||++|+++|+..+.++|+.+.
T Consensus 15 ~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaq 94 (246)
T KOG4252|consen 15 TDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQ 94 (246)
T ss_pred hhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhcccc
Confidence 34566799999999999999999999999999999999999999988888888888899999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 040481 91 GALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAF 170 (222)
Q Consensus 91 ~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 170 (222)
+.++||+.+|+.||+....|++.+.... ..+|.++|-||+|+.++..+...++..+++.+.+.++.+|++...||..+|
T Consensus 95 a~vLVFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF 173 (246)
T KOG4252|consen 95 ASVLVFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVF 173 (246)
T ss_pred ceEEEEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHH
Confidence 9999999999999999999999998876 458999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhc
Q 040481 171 EIVIREIYSNVSRKV 185 (222)
Q Consensus 171 ~~i~~~~~~~~~~~~ 185 (222)
.+|++++..+..+..
T Consensus 174 ~YLaeK~~q~~kq~~ 188 (246)
T KOG4252|consen 174 AYLAEKLTQQKKQSL 188 (246)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999998887765533
No 113
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.95 E-value=6.5e-28 Score=179.26 Aligned_cols=165 Identities=33% Similarity=0.555 Sum_probs=148.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEE-CCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEI-DGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
..+|++|||+.++|||+|+..+..+.++..|.||.. +-+...+.+ ++..+.+.+|||+|++.|+..++..|+.+|+|+
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 468999999999999999999999999999999976 555566777 499999999999999999999888999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCcC------------CCCCHHHHHHHHHHcC-CeEEEEc
Q 040481 94 IVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDLESI------------RNVSTEEGKSLAEAEG-LFFMETS 159 (222)
Q Consensus 94 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~s 159 (222)
+||++.+++||+++ .+|+.++.... .+.|+|+||+|.||.++ ..+..++...+++..| ..|+|||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 99999999999998 78999999988 66899999999999742 3677888999999999 5699999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh
Q 040481 160 ALDSTNVKSAFEIVIREIYSNV 181 (222)
Q Consensus 160 a~~~~~i~~~~~~i~~~~~~~~ 181 (222)
|+++.|++++|+.++..++...
T Consensus 161 a~tq~~v~~vF~~a~~~~l~~~ 182 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAALRPP 182 (198)
T ss_pred hhhhCCcHHHHHHHHHHHhccc
Confidence 9999999999999999888654
No 114
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=2.6e-26 Score=171.95 Aligned_cols=143 Identities=36% Similarity=0.650 Sum_probs=128.0
Q ss_pred CcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcC
Q 040481 39 NEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHS 118 (222)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~ 118 (222)
+.+...+.+|.+.++....+.+++..+.+.||||+|++.+...+..+++.+|++|+|||++++.+|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 34567788999989988888889999999999999999999999999999999999999999999999999999887665
Q ss_pred CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHHHHh
Q 040481 119 DTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSNV 181 (222)
Q Consensus 119 ~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~~ 181 (222)
...+|+++|+||+|+.+.+.+..+++..++..+++.|+++||++|.||+++|++|+..+.+..
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 567899999999999876778888888899989999999999999999999999999876543
No 115
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.95 E-value=7.3e-27 Score=172.60 Aligned_cols=152 Identities=18% Similarity=0.331 Sum_probs=117.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC-CCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEF-NPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
+|+++|+++||||||+++|.+... ...+.++.+..... + ....+.+++||+||+..+...+..+++.+|++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--F--EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--E--EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 44556666644322 2 234577889999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhcC---CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-----HcCCeEEEEccCCCCCHHH
Q 040481 97 DITRRTTFDSISRWLDELKTHS---DTTVARMLVGNKCDLESIRNVSTEEGKSLAE-----AEGLFFMETSALDSTNVKS 168 (222)
Q Consensus 97 d~~~~~s~~~~~~~~~~i~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~ 168 (222)
|++++.++..+..|+..+.... ..++|+++|+||+|+.+.. ..++...... ...++++++||++|.|+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 9999999998888887775532 2578999999999996432 2222222211 1234589999999999999
Q ss_pred HHHHHHH
Q 040481 169 AFEIVIR 175 (222)
Q Consensus 169 ~~~~i~~ 175 (222)
+|++|.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999864
No 116
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.95 E-value=3.9e-26 Score=171.04 Aligned_cols=153 Identities=22% Similarity=0.399 Sum_probs=119.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEE
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIV 95 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 95 (222)
.++|+++|++++|||||+++|..+.+.. ..++.+.++. .+.++ .+.+.+||+||++.+...+..+++.+|++|+|
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 4799999999999999999998877654 4556554433 33333 46788999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHH-HHH----HHcCCeEEEEccCCCCCHHHH
Q 040481 96 YDITRRTTFDSISRWLDELKTHSD-TTVARMLVGNKCDLESIRNVSTEEGK-SLA----EAEGLFFMETSALDSTNVKSA 169 (222)
Q Consensus 96 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~-~~~----~~~~~~~~~~sa~~~~~i~~~ 169 (222)
+|+++++++.....++..+..... ...|+++++||+|+.+ ....++.. .+. ...+++++++||++|.|++++
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~ 167 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG--AMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEG 167 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC--CCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHH
Confidence 999999999888777766654332 5689999999999864 23333322 221 234567999999999999999
Q ss_pred HHHHHH
Q 040481 170 FEIVIR 175 (222)
Q Consensus 170 ~~~i~~ 175 (222)
|++|.+
T Consensus 168 ~~~l~~ 173 (174)
T cd04153 168 LDWIAS 173 (174)
T ss_pred HHHHhc
Confidence 999864
No 117
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=1e-25 Score=180.09 Aligned_cols=145 Identities=25% Similarity=0.511 Sum_probs=124.8
Q ss_pred CCCCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECC-------------eEEEEEEEeCCCc
Q 040481 9 GGGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDG-------------KEVKAQIWDTAGQ 75 (222)
Q Consensus 9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~D~~G~ 75 (222)
..-+....+||+++|+.|||||||+++|.++.+...+.++++.++....+.+++ ..+.++|||++|+
T Consensus 14 ~~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGq 93 (334)
T PLN00023 14 NGGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGH 93 (334)
T ss_pred ccCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCC
Confidence 355677779999999999999999999999988888888988888777766642 4688999999999
Q ss_pred chhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCC------------CCCcEEEEEeCCCCCcCC---C--
Q 040481 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSD------------TTVARMLVGNKCDLESIR---N-- 138 (222)
Q Consensus 76 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~p~iiv~nK~Dl~~~~---~-- 138 (222)
+.+..++..+++.+|++|+|||+++..+|+.+..|+..+..... ..+|++||+||+||...+ .
T Consensus 94 ErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s 173 (334)
T PLN00023 94 ERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSS 173 (334)
T ss_pred hhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccc
Confidence 99999999999999999999999999999999999999987531 258999999999997543 2
Q ss_pred -CCHHHHHHHHHHcCC
Q 040481 139 -VSTEEGKSLAEAEGL 153 (222)
Q Consensus 139 -~~~~~~~~~~~~~~~ 153 (222)
+..+++++|+...++
T Consensus 174 ~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 174 GNLVDAARQWVEKQGL 189 (334)
T ss_pred cccHHHHHHHHHHcCC
Confidence 357899999998874
No 118
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.94 E-value=3.8e-26 Score=170.01 Aligned_cols=151 Identities=19% Similarity=0.327 Sum_probs=118.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEE
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYD 97 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d 97 (222)
+|+++|+++||||||+++|.+. +...+.++.+.. ...+.+. .+.+.+||+||+..+...+..+++.+|++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999876 555666776654 2334443 4678899999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHH------HHHHHHc--CCeEEEEccCCC-----
Q 040481 98 ITRRTTFDSISRWLDELKTHSD-TTVARMLVGNKCDLESIRNVSTEEG------KSLAEAE--GLFFMETSALDS----- 163 (222)
Q Consensus 98 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~------~~~~~~~--~~~~~~~sa~~~----- 163 (222)
+++..+|+.+..|+..+..... .++|+++|+||.|+.+... ..+. ..++... .+.+++|||++|
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~--~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~ 153 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALL--GADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI 153 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCC--HHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcc
Confidence 9999999999999988866533 5789999999999975332 2211 1223222 356888999998
Q ss_pred -CCHHHHHHHHHH
Q 040481 164 -TNVKSAFEIVIR 175 (222)
Q Consensus 164 -~~i~~~~~~i~~ 175 (222)
.|+.+.|+||+.
T Consensus 154 ~~g~~~~~~wl~~ 166 (167)
T cd04161 154 DPSIVEGLRWLLA 166 (167)
T ss_pred ccCHHHHHHHHhc
Confidence 899999999975
No 119
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.94 E-value=3.6e-26 Score=168.69 Aligned_cols=152 Identities=23% Similarity=0.411 Sum_probs=117.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEE
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYD 97 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d 97 (222)
+|+++|++|||||||+++|.+..+.. ..++.+.++ ..+... ..+.+.+||+||+..+...+..++..+|++|+|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999987653 345555433 333333 45779999999999999899999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHH------HHHcCCeEEEEccCCCCCHHHHH
Q 040481 98 ITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSL------AEAEGLFFMETSALDSTNVKSAF 170 (222)
Q Consensus 98 ~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~~sa~~~~~i~~~~ 170 (222)
+.++.++..+..|+..+.... ..+.|+++|+||+|+... ...+++... +...+++++++||++|.|++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 999999999888887775543 256899999999998642 222333222 22234579999999999999999
Q ss_pred HHHHH
Q 040481 171 EIVIR 175 (222)
Q Consensus 171 ~~i~~ 175 (222)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 98864
No 120
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.94 E-value=7.8e-26 Score=171.64 Aligned_cols=155 Identities=22% Similarity=0.323 Sum_probs=123.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEE
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALI 94 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 94 (222)
..++|+++|++|||||||+++|.+..+. .+.++.+.. ...+.+++ +.+.+||+||+..+...+..+++.+|++++
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4589999999999999999999987763 344554433 33444554 567899999999998889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH----------------cCCeEEE
Q 040481 95 VYDITRRTTFDSISRWLDELKTHSD-TTVARMLVGNKCDLESIRNVSTEEGKSLAEA----------------EGLFFME 157 (222)
Q Consensus 95 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~~ 157 (222)
|+|+++..+|.....|+..+..... .+.|+++++||+|+.. .+..++....... ..+.+++
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFM 170 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEEE
Confidence 9999999999888888877765433 5689999999999863 4555666655532 2246899
Q ss_pred EccCCCCCHHHHHHHHHHH
Q 040481 158 TSALDSTNVKSAFEIVIRE 176 (222)
Q Consensus 158 ~sa~~~~~i~~~~~~i~~~ 176 (222)
|||++|.|++++|++|.+.
T Consensus 171 ~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 171 CSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred eEecCCCChHHHHHHHHhh
Confidence 9999999999999999875
No 121
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.94 E-value=8.2e-26 Score=167.92 Aligned_cols=152 Identities=24% Similarity=0.423 Sum_probs=117.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCC------CCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCE
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFN------PHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 91 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 91 (222)
+|+++|++|+|||||+++|.+.... ..+.++.+... ..+.++ ...+.+||+||++.+...+..++..+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 5899999999999999999764321 12234443333 344444 4678899999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH-------cCCeEEEEccCCC
Q 040481 92 ALIVYDITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLAEA-------EGLFFMETSALDS 163 (222)
Q Consensus 92 vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~sa~~~ 163 (222)
+++|+|+.+..++.....|+..+.... ..++|+++|+||+|+... ...++...+... .+++++++||++|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 999999999999998888887776543 357899999999998642 333444444332 2467999999999
Q ss_pred CCHHHHHHHHHH
Q 040481 164 TNVKSAFEIVIR 175 (222)
Q Consensus 164 ~~i~~~~~~i~~ 175 (222)
.|+++++++|.+
T Consensus 155 ~gv~e~~~~l~~ 166 (167)
T cd04160 155 TGVREGIEWLVE 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 999999999865
No 122
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.94 E-value=4.1e-26 Score=168.07 Aligned_cols=151 Identities=23% Similarity=0.380 Sum_probs=118.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEE
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYD 97 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d 97 (222)
||+++|++|||||||++++.+... ....++.+... ..+.+. .+.+.+||+||+..+...+..++..+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999998873 33445544433 334343 4678899999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-----HcCCeEEEEccCCCCCHHHHHH
Q 040481 98 ITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLAE-----AEGLFFMETSALDSTNVKSAFE 171 (222)
Q Consensus 98 ~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~~ 171 (222)
++++.++..+..|+..+.... ..+.|+++|+||+|+.... ..++..+... ...++++++||++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 999999999988887765543 3678999999999987533 2333333322 2356799999999999999999
Q ss_pred HHHH
Q 040481 172 IVIR 175 (222)
Q Consensus 172 ~i~~ 175 (222)
+|+.
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 8864
No 123
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.94 E-value=2e-26 Score=169.83 Aligned_cols=151 Identities=23% Similarity=0.353 Sum_probs=113.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEE
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYD 97 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d 97 (222)
||+++|++++|||||+++|....+.. ..++.+.++. .+.+ ..+.+++||+||+..+...+..++..+|++|+|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998776543 3455444432 3333 35678999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHH-HhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-----HcCCeEEEEccCCCCCHHHHHH
Q 040481 98 ITRRTTFDSISRWLDEL-KTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAE-----AEGLFFMETSALDSTNVKSAFE 171 (222)
Q Consensus 98 ~~~~~s~~~~~~~~~~i-~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~~ 171 (222)
++++.++....+++..+ ......++|+++|+||+|+.+.. ...+...... ..+.+++++||++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 99998888776655544 33333568999999999986432 2222221111 1235699999999999999999
Q ss_pred HHHH
Q 040481 172 IVIR 175 (222)
Q Consensus 172 ~i~~ 175 (222)
+|++
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9864
No 124
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.94 E-value=2.1e-25 Score=167.16 Aligned_cols=157 Identities=29% Similarity=0.438 Sum_probs=124.4
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
...++|+++|+.+||||||+++|..+.... ..||.+ +....+.+.+ +.+.+||++|+..+...|..++..+|++|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g--~~~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIG--FNIEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESS--EEEEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccc--cccceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence 567899999999999999999998765433 345544 4445555655 56789999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhc-CCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH------cCCeEEEEccCCCCCH
Q 040481 94 IVYDITRRTTFDSISRWLDELKTH-SDTTVARMLVGNKCDLESIRNVSTEEGKSLAEA------EGLFFMETSALDSTNV 166 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~sa~~~~~i 166 (222)
||+|.++.+.+.+....+..+... ....+|++|++||.|+.+ ....+++...... ..+.++.|||.+|.|+
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv 164 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGV 164 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTH
T ss_pred EEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCcCH
Confidence 999999999998887777666554 336789999999999874 3455555443322 3455899999999999
Q ss_pred HHHHHHHHHHH
Q 040481 167 KSAFEIVIREI 177 (222)
Q Consensus 167 ~~~~~~i~~~~ 177 (222)
.+.|+||.+.+
T Consensus 165 ~e~l~WL~~~~ 175 (175)
T PF00025_consen 165 DEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99999998864
No 125
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=6.3e-25 Score=165.93 Aligned_cols=156 Identities=21% Similarity=0.278 Sum_probs=119.9
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
...++|+++|++|||||||++++.+..+.. +.++.+.. ...+.+. .+.+.+||+||+..+...+..++..+|++|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPT--SEELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccc--eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 445899999999999999999999876542 23443332 2333333 367889999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH------------cCCeEEEEcc
Q 040481 94 IVYDITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLAEA------------EGLFFMETSA 160 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~sa 160 (222)
+|+|++++.++.....++..+.... ..+.|+++|+||.|+.. .+..+++.+.... ....+++|||
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 9999999999988887777665432 25689999999999863 3455554433311 1334899999
Q ss_pred CCCCCHHHHHHHHHHH
Q 040481 161 LDSTNVKSAFEIVIRE 176 (222)
Q Consensus 161 ~~~~~i~~~~~~i~~~ 176 (222)
+++.|++++++||+.+
T Consensus 168 ~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 168 VRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999864
No 126
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.93 E-value=1.4e-24 Score=153.97 Aligned_cols=162 Identities=23% Similarity=0.386 Sum_probs=129.3
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEE
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 92 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 92 (222)
++++++|+++|..|+||||++++|.+.. .....|+.+ +...+..+. .+.+++||++|+..+...|+.||.++|++
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g--f~Iktl~~~--~~~L~iwDvGGq~~lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLG--FQIKTLEYK--GYTLNIWDVGGQKTLRSYWKNYFESTDGL 87 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccc--eeeEEEEec--ceEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence 4568999999999999999999998876 233334444 555555554 47788999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhc-CCCCCcEEEEEeCCCCCcCCCCCHHH------HHHHHHHcCCeEEEEccCCCCC
Q 040481 93 LIVYDITRRTTFDSISRWLDELKTH-SDTTVARMLVGNKCDLESIRNVSTEE------GKSLAEAEGLFFMETSALDSTN 165 (222)
Q Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~------~~~~~~~~~~~~~~~sa~~~~~ 165 (222)
|+|||.+|+..|+.....++.+... .-.+.|++|++||.|++. .+..+. ..+++....++++.|||.+|++
T Consensus 88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~--~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~ 165 (185)
T KOG0073|consen 88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG--ALSLEEISKALDLEELAKSHHWRLVKCSAVTGED 165 (185)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc--ccCHHHHHHhhCHHHhccccCceEEEEecccccc
Confidence 9999999999998887766655442 336689999999999973 222222 2344566789999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 040481 166 VKSAFEIVIREIYSNV 181 (222)
Q Consensus 166 i~~~~~~i~~~~~~~~ 181 (222)
+.+.++|+++.+.++.
T Consensus 166 l~~gidWL~~~l~~r~ 181 (185)
T KOG0073|consen 166 LLEGIDWLCDDLMSRL 181 (185)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998743
No 127
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.93 E-value=6.7e-25 Score=163.13 Aligned_cols=156 Identities=20% Similarity=0.203 Sum_probs=110.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhh---------hhHHHhhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFR---------AVTSAYYR 87 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~ 87 (222)
++|+++|++|+|||||+++|.+........+..+.+.....+.. ..+.+.+|||||..... ........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 37999999999999999999998764332222233333333323 35678999999973210 11111223
Q ss_pred CCCEEEEEEECCChhh--HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCC
Q 040481 88 GAVGALIVYDITRRTT--FDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTN 165 (222)
Q Consensus 88 ~~d~vi~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 165 (222)
.+|++|+|+|+++..+ ++....|+..+.... .+.|+++|+||+|+.....+.. ...+....+++++++||++|.|
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~g 155 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEEG 155 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccCC
Confidence 4689999999998764 356667887776543 4689999999999975433322 4455566678899999999999
Q ss_pred HHHHHHHHHHHH
Q 040481 166 VKSAFEIVIREI 177 (222)
Q Consensus 166 i~~~~~~i~~~~ 177 (222)
++++|+++.+.+
T Consensus 156 i~~l~~~l~~~~ 167 (168)
T cd01897 156 VDEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998876
No 128
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.93 E-value=9e-25 Score=160.25 Aligned_cols=151 Identities=24% Similarity=0.408 Sum_probs=119.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEEC
Q 040481 19 IVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDI 98 (222)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~ 98 (222)
|+++|++|||||||+++|.+..+...+.++.+..+.. +.... +.+.+||+||+..+...+..++..+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 7999999999999999999998888777777655442 33333 6789999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHH-----HHcCCeEEEEccCCCCCHHHHHHH
Q 040481 99 TRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLA-----EAEGLFFMETSALDSTNVKSAFEI 172 (222)
Q Consensus 99 ~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~~~~~ 172 (222)
++..++.....|+..+.... ..++|+++|+||+|+.+... ........ ....++++++|+++|.|+++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDW 155 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHH
Confidence 99999888877777665432 25689999999999865322 22221111 123467899999999999999998
Q ss_pred HHH
Q 040481 173 VIR 175 (222)
Q Consensus 173 i~~ 175 (222)
|.+
T Consensus 156 l~~ 158 (159)
T cd04159 156 LIK 158 (159)
T ss_pred Hhh
Confidence 865
No 129
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.93 E-value=8.2e-25 Score=162.90 Aligned_cols=157 Identities=18% Similarity=0.121 Sum_probs=112.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcch----hhhhHHH---hhcCCC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER----FRAVTSA---YYRGAV 90 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~---~~~~~d 90 (222)
+|+++|.+|||||||+++|.+........+..+.+.....+.+.+. ..+.+|||||... ...+... .+..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 6899999999999999999876542222222222333333333332 4688999999632 1122233 345699
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH-cCCeEEEEccCCCCCH
Q 040481 91 GALIVYDITRR-TTFDSISRWLDELKTHSD--TTVARMLVGNKCDLESIRNVSTEEGKSLAEA-EGLFFMETSALDSTNV 166 (222)
Q Consensus 91 ~vi~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~i 166 (222)
++++|+|++++ .+++.+..|.+.+..... ...|+++|+||+|+.+.... .+....+... .+.+++++||+++.|+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 99999999999 789999999888876543 46899999999999764443 3344455555 3788999999999999
Q ss_pred HHHHHHHHHH
Q 040481 167 KSAFEIVIRE 176 (222)
Q Consensus 167 ~~~~~~i~~~ 176 (222)
+++|+++.+.
T Consensus 160 ~~l~~~i~~~ 169 (170)
T cd01898 160 DELLRKLAEL 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999998864
No 130
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=6.1e-24 Score=155.39 Aligned_cols=157 Identities=38% Similarity=0.525 Sum_probs=128.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEE
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIV 95 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 95 (222)
.+||+++|++|+|||||++++.+......+.++.+.++....+..++..+.+.+||+||+..+...+..+++.+++++++
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999999987777777777777777677777668899999999999988888999999999999
Q ss_pred EECCCh-hhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 040481 96 YDITRR-TTFDSIS-RWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIV 173 (222)
Q Consensus 96 ~d~~~~-~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 173 (222)
+|.... .++.... .|...+........|+++++||.|+.... ........+......+++++||.++.|+.++|++|
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 999887 6666665 67766666554478999999999997543 44444445555556789999999999999999865
No 131
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=2.8e-24 Score=161.43 Aligned_cols=154 Identities=23% Similarity=0.307 Sum_probs=113.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc-------CCCCCCC------ccceeEEEEEEE--E---CCeEEEEEEEeCCCcchhh
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE-------FNPHSKA------TIGVEFQTQSME--I---DGKEVKAQIWDTAGQERFR 79 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~--~---~~~~~~~~i~D~~G~~~~~ 79 (222)
+|+++|++++|||||+++|++.. ....+.+ +.+.++....+. + ++..+.+.+|||||+..+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998742 1111212 123333333322 2 5667889999999999999
Q ss_pred hhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCe---EE
Q 040481 80 AVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLF---FM 156 (222)
Q Consensus 80 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~ 156 (222)
..+..+++.+|++|+|||++++.++.....|.... ..++|+++|+||+|+.+.. ..+...+++..++++ ++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence 89999999999999999999987766666665433 2457999999999986422 122334556666653 89
Q ss_pred EEccCCCCCHHHHHHHHHHHH
Q 040481 157 ETSALDSTNVKSAFEIVIREI 177 (222)
Q Consensus 157 ~~sa~~~~~i~~~~~~i~~~~ 177 (222)
++||++|.|++++|+++...+
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhC
Confidence 999999999999999988754
No 132
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=1.5e-24 Score=166.42 Aligned_cols=156 Identities=19% Similarity=0.149 Sum_probs=115.5
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcch---------hhhhHHH
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER---------FRAVTSA 84 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~ 84 (222)
...++|+|+|++|||||||++++++........+..+.+.....+.+.+. ..+.+||+||... +...+ .
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence 44589999999999999999999998654333333333444444555443 2678999999732 12111 2
Q ss_pred hhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCC
Q 040481 85 YYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDST 164 (222)
Q Consensus 85 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (222)
.+..+|++++|+|++++.++.....|...+......++|+++|+||+|+.+..... ..+...+.+++++||+++.
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~~ 191 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTGE 191 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCCC
Confidence 36789999999999999888887778877776655678999999999986533221 3445567789999999999
Q ss_pred CHHHHHHHHHHH
Q 040481 165 NVKSAFEIVIRE 176 (222)
Q Consensus 165 ~i~~~~~~i~~~ 176 (222)
|+++++++|.+.
T Consensus 192 gi~~l~~~L~~~ 203 (204)
T cd01878 192 GLDELLEAIEEL 203 (204)
T ss_pred CHHHHHHHHHhh
Confidence 999999998765
No 133
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=5.9e-24 Score=173.43 Aligned_cols=162 Identities=17% Similarity=0.089 Sum_probs=122.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcch-------hhhhHHHhhcCCC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER-------FRAVTSAYYRGAV 90 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~d 90 (222)
.|+|+|.|+||||||+++|++........+.++.......+.+. ....+.+||+||..+ +...+...++.++
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 68999999999999999999865433333444555555555553 234578999999632 2223334567899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 040481 91 GALIVYDITRRTTFDSISRWLDELKTHSD--TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKS 168 (222)
Q Consensus 91 ~vi~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 168 (222)
++|+|||+++..+++.+..|..++..+.. ...|+++|+||+|+.+......+....++...+++++++||+++.|+++
T Consensus 239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~e 318 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDE 318 (335)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHH
Confidence 99999999988889999999999987654 4689999999999975444444445555566678899999999999999
Q ss_pred HHHHHHHHHHHH
Q 040481 169 AFEIVIREIYSN 180 (222)
Q Consensus 169 ~~~~i~~~~~~~ 180 (222)
++++|.+.+.+.
T Consensus 319 L~~~L~~~l~~~ 330 (335)
T PRK12299 319 LLRALWELLEEA 330 (335)
T ss_pred HHHHHHHHHHhh
Confidence 999998877643
No 134
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.92 E-value=1.3e-23 Score=156.99 Aligned_cols=152 Identities=24% Similarity=0.358 Sum_probs=115.3
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
...++|+++|++|||||||++++.+..+.. ..++.+.. ...+...+ ..+.+||+||...+...+..+++.+|+++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~--~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 86 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFN--IKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLI 86 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence 447899999999999999999999876532 34444433 33344444 56789999999988888888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhc-CCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcC--------CeEEEEccCCCC
Q 040481 94 IVYDITRRTTFDSISRWLDELKTH-SDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEG--------LFFMETSALDST 164 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~sa~~~~ 164 (222)
+|+|+.+..++.....|+..+... ...++|+++++||.|+.+.. ..++ +....+ .+++++||++|.
T Consensus 87 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~---i~~~l~~~~~~~~~~~~~~~Sa~~~~ 161 (173)
T cd04155 87 YVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAEE---IAEALNLHDLRDRTWHIQACSAKTGE 161 (173)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHHH---HHHHcCCcccCCCeEEEEEeECCCCC
Confidence 999999998888887776665443 23568999999999986432 1222 222222 247899999999
Q ss_pred CHHHHHHHHHH
Q 040481 165 NVKSAFEIVIR 175 (222)
Q Consensus 165 ~i~~~~~~i~~ 175 (222)
|++++|+||++
T Consensus 162 gi~~~~~~l~~ 172 (173)
T cd04155 162 GLQEGMNWVCK 172 (173)
T ss_pred CHHHHHHHHhc
Confidence 99999999875
No 135
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.91 E-value=2.5e-23 Score=153.80 Aligned_cols=151 Identities=19% Similarity=0.174 Sum_probs=104.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc---CCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEE
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE---FNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALI 94 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 94 (222)
.|+++|+++||||||+++|.+.. +.....++++.+.....+.+.. ...+.+|||||++.+......++..+|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 58999999999999999998643 2223333444444444444442 4578899999999887777778899999999
Q ss_pred EEECCC---hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC--CCHHHHHHHHHH---cCCeEEEEccCCCCCH
Q 040481 95 VYDITR---RTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRN--VSTEEGKSLAEA---EGLFFMETSALDSTNV 166 (222)
Q Consensus 95 v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~---~~~~~~~~sa~~~~~i 166 (222)
|+|+++ .++++. +..+... ...|+++|+||+|+..... ...++..+.... .+.+++++||+++.|+
T Consensus 81 V~d~~~~~~~~~~~~----~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 154 (164)
T cd04171 81 VVAADEGIMPQTREH----LEILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGI 154 (164)
T ss_pred EEECCCCccHhHHHH----HHHHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCH
Confidence 999987 333332 2222221 1238999999999965321 112233333333 4678999999999999
Q ss_pred HHHHHHHHH
Q 040481 167 KSAFEIVIR 175 (222)
Q Consensus 167 ~~~~~~i~~ 175 (222)
+++++.+..
T Consensus 155 ~~l~~~l~~ 163 (164)
T cd04171 155 EELKEYLDE 163 (164)
T ss_pred HHHHHHHhh
Confidence 999987653
No 136
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.91 E-value=8.2e-24 Score=153.16 Aligned_cols=134 Identities=22% Similarity=0.245 Sum_probs=99.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcc-----hhhhhHHHhhcCCCEE
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE-----RFRAVTSAYYRGAVGA 92 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~d~v 92 (222)
||+++|++|||||||+++|.+.... +.++.+.+ +.. .+||+||.. .+..... .++.+|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~-------~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVE-------YND-----GAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEE-------EcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 7999999999999999999887642 23332222 221 589999972 2333333 58999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCC-eEEEEccCCCCCHHHHHH
Q 040481 93 LIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGL-FFMETSALDSTNVKSAFE 171 (222)
Q Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~ 171 (222)
|+|||++++.++.. ..|...+ ..|+++|+||+|+.+ .....++..+++...+. +++++||++|.|++++|+
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 99999999988754 3443322 139999999999965 33455666777777775 799999999999999998
Q ss_pred HHH
Q 040481 172 IVI 174 (222)
Q Consensus 172 ~i~ 174 (222)
++.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 764
No 137
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.91 E-value=1.2e-22 Score=157.45 Aligned_cols=168 Identities=38% Similarity=0.573 Sum_probs=138.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEE
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIV 95 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 95 (222)
.+||+++|++|||||||+++|.+..+...+.++.+..+...........+.+.+||++|++.+...+..++..++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 38999999999999999999999999998888887777777776666688899999999999999999999999999999
Q ss_pred EECCCh-hhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCC------------CCCHHHHHHHHHHc---CCeEEEEc
Q 040481 96 YDITRR-TTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIR------------NVSTEEGKSLAEAE---GLFFMETS 159 (222)
Q Consensus 96 ~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~------------~~~~~~~~~~~~~~---~~~~~~~s 159 (222)
+|..+. .+++....|...+........|+++|+||+|+.... .............. ...++++|
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 999994 455666889999888776678999999999997653 22222222222222 33489999
Q ss_pred cC--CCCCHHHHHHHHHHHHHHHhhh
Q 040481 160 AL--DSTNVKSAFEIVIREIYSNVSR 183 (222)
Q Consensus 160 a~--~~~~i~~~~~~i~~~~~~~~~~ 183 (222)
++ ++.++.++|..++..+.+....
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~~~~~~ 190 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLLEEIEK 190 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHHHhhhh
Confidence 99 9999999999999988766544
No 138
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.91 E-value=4.6e-23 Score=153.08 Aligned_cols=157 Identities=16% Similarity=0.136 Sum_probs=109.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEEC-CeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEID-GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
.|+++|++++|||||+++|....+.....+..+.+.....+... .....+.+|||||+..+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 58999999999999999999887765544444444433344333 13567889999999998888888899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCC-HHHHHHHHH------HcCCeEEEEccCCCCCHHHH
Q 040481 97 DITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVS-TEEGKSLAE------AEGLFFMETSALDSTNVKSA 169 (222)
Q Consensus 97 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~------~~~~~~~~~sa~~~~~i~~~ 169 (222)
|+++...... ...+..+.. .++|+++|+||+|+....... .+....+.. ...++++++|+++|.|+.++
T Consensus 82 d~~~~~~~~~-~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQT-IEAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHHH-HHHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 9988532111 122222332 457999999999986422110 111111111 12367999999999999999
Q ss_pred HHHHHHHHH
Q 040481 170 FEIVIREIY 178 (222)
Q Consensus 170 ~~~i~~~~~ 178 (222)
+++|.+...
T Consensus 158 ~~~l~~~~~ 166 (168)
T cd01887 158 LEAILLLAE 166 (168)
T ss_pred HHHHHHhhh
Confidence 999887643
No 139
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.90 E-value=2.9e-22 Score=145.08 Aligned_cols=153 Identities=46% Similarity=0.768 Sum_probs=121.9
Q ss_pred EEcCCCCCHHHHHHHHhcCcC-CCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECC
Q 040481 21 IIGDSAVGKSNLLSRYARNEF-NPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDIT 99 (222)
Q Consensus 21 i~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~ 99 (222)
++|++|+|||||++++.+... .....++. .+..............+.+||+||...+...+..+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998876 44444554 6666666666677888999999999988888888999999999999999
Q ss_pred ChhhHHHHHHH-HHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHH-HHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 040481 100 RRTTFDSISRW-LDELKTHSDTTVARMLVGNKCDLESIRNVSTEE-GKSLAEAEGLFFMETSALDSTNVKSAFEIVI 174 (222)
Q Consensus 100 ~~~s~~~~~~~-~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 174 (222)
++.++..+..| ...+........|+++|+||.|+.......... .........++++++|+.++.|+.+++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 99998888777 333333445678999999999987544333322 4455666688999999999999999999875
No 140
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.90 E-value=1.9e-22 Score=148.28 Aligned_cols=147 Identities=17% Similarity=0.168 Sum_probs=109.9
Q ss_pred EEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhh------hHHHhhc--CCCEE
Q 040481 21 IIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRA------VTSAYYR--GAVGA 92 (222)
Q Consensus 21 i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~--~~d~v 92 (222)
++|.+|+|||||++++.+........+.++.+.....+.+++ ..+.+|||||...+.. .+..++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998765444445555566556666665 4678999999876543 3455564 89999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 040481 93 LIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEI 172 (222)
Q Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 172 (222)
|+|+|+.+.... ..|...+.. .++|+++|+||+|+.+...+... ...++..++++++++||.++.|+++++++
T Consensus 79 i~v~d~~~~~~~---~~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 79 VNVVDATNLERN---LYLTLQLLE---LGLPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEeeCCcchhH---HHHHHHHHH---cCCCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 999999886542 234433333 35799999999999764444333 45677778899999999999999999998
Q ss_pred HHHH
Q 040481 173 VIRE 176 (222)
Q Consensus 173 i~~~ 176 (222)
+.+.
T Consensus 152 l~~~ 155 (158)
T cd01879 152 IAEL 155 (158)
T ss_pred HHHH
Confidence 8775
No 141
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.90 E-value=2.7e-23 Score=150.84 Aligned_cols=148 Identities=18% Similarity=0.209 Sum_probs=107.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcch------hhhhHHHhh--cC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER------FRAVTSAYY--RG 88 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------~~~~~~~~~--~~ 88 (222)
|+|+++|.|+||||||+|+|++........|..+.+.....+.+.+ ..+.++|+||.-. -......++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 6899999999999999999999987666677778888877887777 4567999999322 123334444 68
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 040481 89 AVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKS 168 (222)
Q Consensus 89 ~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 168 (222)
.|++|.|+|+++.+.- ......+ .+.++|+++++||+|+.....+.. ....+.+.++++++++||+++.|+++
T Consensus 79 ~D~ii~VvDa~~l~r~---l~l~~ql---~e~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 79 PDLIIVVVDATNLERN---LYLTLQL---LELGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SSEEEEEEEGGGHHHH---HHHHHHH---HHTTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CCEEEEECCCCCHHHH---HHHHHHH---HHcCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 9999999999875431 1222222 235689999999999876555443 35668888999999999999999999
Q ss_pred HHHHH
Q 040481 169 AFEIV 173 (222)
Q Consensus 169 ~~~~i 173 (222)
+++.|
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 98754
No 142
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.90 E-value=2.1e-22 Score=164.25 Aligned_cols=159 Identities=19% Similarity=0.122 Sum_probs=116.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcch-------hhhhHHHhhcCC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER-------FRAVTSAYYRGA 89 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~ 89 (222)
..|+++|.++||||||+++|++........+.++.......+.+++ ...+.+||+||... ....+...+..+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 3789999999999999999998654333333334444445555543 35678999999642 112233345689
Q ss_pred CEEEEEEECCCh---hhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCC
Q 040481 90 VGALIVYDITRR---TTFDSISRWLDELKTHSD--TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDST 164 (222)
Q Consensus 90 d~vi~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (222)
+++|+|+|+++. .+++.+..|.+++..+.. ...|++||+||+|+.+... ..+....++...+.+++++||+++.
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~ 315 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGE 315 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCc
Confidence 999999999976 678888888888876643 4689999999999975432 2344555666677889999999999
Q ss_pred CHHHHHHHHHHHH
Q 040481 165 NVKSAFEIVIREI 177 (222)
Q Consensus 165 ~i~~~~~~i~~~~ 177 (222)
|++++++++.+.+
T Consensus 316 GI~eL~~~I~~~l 328 (329)
T TIGR02729 316 GLDELLYALAELL 328 (329)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999887753
No 143
>PRK04213 GTP-binding protein; Provisional
Probab=99.90 E-value=3.3e-23 Score=158.61 Aligned_cols=153 Identities=20% Similarity=0.246 Sum_probs=102.9
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCC-----------cchhhhhH
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG-----------QERFRAVT 82 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~ 82 (222)
...++|+++|++|||||||+++|.+..+.....++. +.....+.+. .+.+||+|| .+.+...+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~--t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGV--TRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCce--eeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 345799999999999999999999887654444433 3333333333 478999999 34455555
Q ss_pred HHhhc----CCCEEEEEEECCChhhH-H---------HHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHH
Q 040481 83 SAYYR----GAVGALIVYDITRRTTF-D---------SISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLA 148 (222)
Q Consensus 83 ~~~~~----~~d~vi~v~d~~~~~s~-~---------~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~ 148 (222)
..++. .++++++|+|..+...+ + ....++..+. ..++|+++|+||+|+.+.. .+...+++
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~~~ 154 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDEIA 154 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHHHH
Confidence 55543 45788888888653221 0 0011122222 2468999999999996433 33455556
Q ss_pred HHcCC---------eEEEEccCCCCCHHHHHHHHHHHHHH
Q 040481 149 EAEGL---------FFMETSALDSTNVKSAFEIVIREIYS 179 (222)
Q Consensus 149 ~~~~~---------~~~~~sa~~~~~i~~~~~~i~~~~~~ 179 (222)
..+++ +++++||++| |+++++++|.+.+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 155 ERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 65554 4899999999 999999999887644
No 144
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.89 E-value=4e-22 Score=163.93 Aligned_cols=154 Identities=19% Similarity=0.158 Sum_probs=112.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcc---------hhhhhHHHh
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE---------RFRAVTSAY 85 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~ 85 (222)
..++|+++|.+++|||||+|+|++........+..+.+.....+.+.+ +..+.+|||+|.. .+... ...
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~t-le~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRAT-LEE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHH-HHH
Confidence 458999999999999999999999775433334445556666666643 2468899999962 22222 235
Q ss_pred hcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCC
Q 040481 86 YRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTN 165 (222)
Q Consensus 86 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 165 (222)
+..+|++|+|+|++++.+++.+..|...+......+.|+++|+||+|+.+... .... .....+++++||++|.|
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-----v~~~-~~~~~~~i~iSAktg~G 339 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-----IERL-EEGYPEAVFVSAKTGEG 339 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh-----HHHH-HhCCCCEEEEEccCCCC
Confidence 78999999999999998887777776666665445689999999999964221 1111 12234689999999999
Q ss_pred HHHHHHHHHHH
Q 040481 166 VKSAFEIVIRE 176 (222)
Q Consensus 166 i~~~~~~i~~~ 176 (222)
+++++++|.+.
T Consensus 340 I~eL~~~I~~~ 350 (351)
T TIGR03156 340 LDLLLEAIAER 350 (351)
T ss_pred HHHHHHHHHhh
Confidence 99999988653
No 145
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.89 E-value=4.7e-23 Score=144.94 Aligned_cols=168 Identities=27% Similarity=0.545 Sum_probs=147.7
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCE
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 91 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 91 (222)
...-.+||.++|++..|||||+-.+.++.+.+++..+.|..+.-+.+.+.+..+.+.+||.+|++++..+.+.....+-+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 33445899999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc----C-CCCCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 040481 92 ALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLES----I-RNVSTEEGKSLAEAEGLFFMETSALDSTNV 166 (222)
Q Consensus 92 vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~----~-~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 166 (222)
++|+||++.+.++..+..|++..+...+..+| |+||+|.|+-- + .+-....++.+++..+++++.+|+..+.||
T Consensus 96 IlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv 174 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINV 174 (205)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccH
Confidence 99999999999999999999999888888888 88999999631 1 111223467788889999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 040481 167 KSAFEIVIREIYSN 180 (222)
Q Consensus 167 ~~~~~~i~~~~~~~ 180 (222)
..+|+.+.-+++..
T Consensus 175 ~KIFK~vlAklFnL 188 (205)
T KOG1673|consen 175 QKIFKIVLAKLFNL 188 (205)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999888877754
No 146
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.89 E-value=1.1e-22 Score=154.99 Aligned_cols=149 Identities=19% Similarity=0.191 Sum_probs=105.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc--CcCCCCC------------CCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhH
Q 040481 17 FKIVIIGDSAVGKSNLLSRYAR--NEFNPHS------------KATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVT 82 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 82 (222)
-+|+++|.+++|||||+++|+. +.+...+ ..+.+.++......+....+.+.+||+||++.+...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 3899999999999999999987 3433322 1223444555555555566788999999999999999
Q ss_pred HHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC-CCHHHHHHHHH-------HcCCe
Q 040481 83 SAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRN-VSTEEGKSLAE-------AEGLF 154 (222)
Q Consensus 83 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~~-------~~~~~ 154 (222)
..+++.+|++++|||+++.. +.....++..+.. .++|+++|+||+|+.+... ...+++.++.. ..+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999998752 2333344444433 4579999999999964322 11233444432 23678
Q ss_pred EEEEccCCCCCHHHH
Q 040481 155 FMETSALDSTNVKSA 169 (222)
Q Consensus 155 ~~~~sa~~~~~i~~~ 169 (222)
++++||++|.|+.+.
T Consensus 159 iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 159 VLYASAKNGWASLNL 173 (194)
T ss_pred EEEeehhcccccccc
Confidence 999999999988654
No 147
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.5e-22 Score=147.15 Aligned_cols=160 Identities=19% Similarity=0.358 Sum_probs=128.1
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEE
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 92 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 92 (222)
.....+|+++|-.++||||++++|..++.... .||.|..++... +. .+.|.+||++|+..+...|+.++++.+++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~--yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVE--YK--NISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEE--Ec--ceEEEEEecCCCcccccchhhhccCCcEE
Confidence 45568999999999999999999988776554 677665555443 44 57788999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-----HcCCeEEEEccCCCCCH
Q 040481 93 LIVYDITRRTTFDSISRWLDELKTHSD-TTVARMLVGNKCDLESIRNVSTEEGKSLAE-----AEGLFFMETSALDSTNV 166 (222)
Q Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i 166 (222)
|||+|-+|++-+..+...+..+..... ...|+++.+||.|++.. ++..++.+... ...+.+..|+|.+|+|+
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a--ls~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL 166 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA--LSAAEITNKLGLHSLRSRNWHIQSTCAISGEGL 166 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc--CCHHHHHhHhhhhccCCCCcEEeeccccccccH
Confidence 999999999999999777776666654 67899999999999743 33333333322 23456888999999999
Q ss_pred HHHHHHHHHHHHH
Q 040481 167 KSAFEIVIREIYS 179 (222)
Q Consensus 167 ~~~~~~i~~~~~~ 179 (222)
.+.++|+...+..
T Consensus 167 ~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 167 YEGLDWLSNNLKK 179 (181)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987754
No 148
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.89 E-value=4.1e-22 Score=149.02 Aligned_cols=155 Identities=23% Similarity=0.186 Sum_probs=108.4
Q ss_pred EEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchh----hh---hHHHhhcCCCEEE
Q 040481 21 IIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERF----RA---VTSAYYRGAVGAL 93 (222)
Q Consensus 21 i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~---~~~~~~~~~d~vi 93 (222)
++|++|||||||+++|.+........+.++.+.....+.+.+ ...+.+||+||.... .. .....++.+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999998865222222223333333343441 456789999996321 11 2234578899999
Q ss_pred EEEECCCh------hhHHHHHHHHHHHHhcCC-------CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEcc
Q 040481 94 IVYDITRR------TTFDSISRWLDELKTHSD-------TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSA 160 (222)
Q Consensus 94 ~v~d~~~~------~s~~~~~~~~~~i~~~~~-------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (222)
+|+|+.+. .+++.+..|...+..... ...|+++|+||+|+..................+..++++||
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA 159 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence 99999988 577777777777765432 36899999999999754443333233444555778999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 040481 161 LDSTNVKSAFEIVIRE 176 (222)
Q Consensus 161 ~~~~~i~~~~~~i~~~ 176 (222)
+++.|++++++++++.
T Consensus 160 ~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 160 KTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhcCHHHHHHHHHhh
Confidence 9999999999988764
No 149
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.88 E-value=1.1e-21 Score=156.61 Aligned_cols=153 Identities=20% Similarity=0.139 Sum_probs=104.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCC-CccceeEEEEEEEECCeEEEEEEEeCCCcchhh--------hhHHHhhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSK-ATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFR--------AVTSAYYRG 88 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~~ 88 (222)
+|+++|.+|||||||+|+|++......+. +.++... ...+...+ ..++.+|||||..... ......+..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~-i~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNR-ISGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCc-EEEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 68999999999999999999987643322 2222222 22222222 3468899999964321 123456789
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCC-eEEEEccCCCCCHH
Q 040481 89 AVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGL-FFMETSALDSTNVK 167 (222)
Q Consensus 89 ~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~ 167 (222)
+|++++|+|+++..+.+ ..++..+.. .+.|+++|+||+|+.+.... .+....+....+. +++++||++|.|++
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDKL-LPLIDKYAILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHHH-HHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 99999999999876654 334444433 45799999999999642221 2233344444443 79999999999999
Q ss_pred HHHHHHHHHHH
Q 040481 168 SAFEIVIREIY 178 (222)
Q Consensus 168 ~~~~~i~~~~~ 178 (222)
++++++.+.+.
T Consensus 154 ~L~~~l~~~l~ 164 (270)
T TIGR00436 154 FLAAFIEVHLP 164 (270)
T ss_pred HHHHHHHHhCC
Confidence 99998887653
No 150
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.88 E-value=7.8e-22 Score=138.52 Aligned_cols=114 Identities=32% Similarity=0.638 Sum_probs=89.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCC--CCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEE
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFN--PHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIV 95 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 95 (222)
||+|+|++|||||||+++|.+.... ....+..+.++.............+++||++|.+.+...+..++..+|++|+|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998876 22334444555555666777777799999999999888888889999999999
Q ss_pred EECCChhhHHHHHH---HHHHHHhcCCCCCcEEEEEeCCC
Q 040481 96 YDITRRTTFDSISR---WLDELKTHSDTTVARMLVGNKCD 132 (222)
Q Consensus 96 ~d~~~~~s~~~~~~---~~~~i~~~~~~~~p~iiv~nK~D 132 (222)
||++++.+|+.+.+ |+..+.... ..+|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence 99999999999854 555555543 4499999999998
No 151
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.88 E-value=1.5e-21 Score=143.00 Aligned_cols=146 Identities=23% Similarity=0.218 Sum_probs=106.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCC-CCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhh--------hHHHhhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNP-HSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRA--------VTSAYYR 87 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~ 87 (222)
++|+++|++|+|||||++++.+..... ...+.++.+.....+... ...+.+||+||...+.. ....++.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 589999999999999999999876432 223333444444444444 35678999999755432 2335678
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 040481 88 GAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVK 167 (222)
Q Consensus 88 ~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 167 (222)
.+|++++|+|++++.+......+.. ....|+++|+||.|+.+.... .......+++++||+++.|++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 9999999999998877655544332 345799999999999754333 344556789999999999999
Q ss_pred HHHHHHHHHH
Q 040481 168 SAFEIVIREI 177 (222)
Q Consensus 168 ~~~~~i~~~~ 177 (222)
+++++|.+.+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999887643
No 152
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=1.3e-21 Score=167.36 Aligned_cols=168 Identities=22% Similarity=0.184 Sum_probs=116.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCccceeEEEEEEEECCeEEEEEEEeCCCc----------chhhhh-H
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFN-PHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ----------ERFRAV-T 82 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~-~ 82 (222)
..++|+++|.++||||||+++|++.... ....++++.+.....+..++.. +.+|||||. +.+... .
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence 4589999999999999999999988653 3334555555555556666654 569999995 223322 2
Q ss_pred HHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC--CHHHHH-HHHHHcCCeEEEEc
Q 040481 83 SAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNV--STEEGK-SLAEAEGLFFMETS 159 (222)
Q Consensus 83 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~-~~~~~~~~~~~~~s 159 (222)
..+++.+|++|+|+|++++.++..+. ++..+.. .++|+++|+||+|+.+.... ...++. .+.....++++++|
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S 363 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS 363 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 34678999999999999998877653 3444433 46799999999999742211 111111 22222357899999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhhhccCCc
Q 040481 160 ALDSTNVKSAFEIVIREIYSNVSRKVLNSD 189 (222)
Q Consensus 160 a~~~~~i~~~~~~i~~~~~~~~~~~~~~s~ 189 (222)
|++|.|++++|..+.+ +++....+.+++.
T Consensus 364 Ak~g~gv~~lf~~i~~-~~~~~~~~i~t~~ 392 (472)
T PRK03003 364 AKTGRAVDKLVPALET-ALESWDTRIPTGR 392 (472)
T ss_pred CCCCCCHHHHHHHHHH-HHHHhcccCCHHH
Confidence 9999999999998876 4555555555443
No 153
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.88 E-value=2.6e-21 Score=146.21 Aligned_cols=156 Identities=19% Similarity=0.210 Sum_probs=108.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcc--------------ceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHH
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATI--------------GVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTS 83 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 83 (222)
+|+++|.+|+|||||+++|++........... +.........+......+.+||+||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 48999999999999999998876654332111 1122222222222345688999999998888888
Q ss_pred HhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCC--HHHHHHHHHH-----------
Q 040481 84 AYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVS--TEEGKSLAEA----------- 150 (222)
Q Consensus 84 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~----------- 150 (222)
.+++.+|++++|+|+.++.+... ..++..+.. .+.|+++|+||+|+....... .+.+.+....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGT 156 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhc
Confidence 99999999999999988765332 233333333 457999999999997522211 2223333332
Q ss_pred ---cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 040481 151 ---EGLFFMETSALDSTNVKSAFEIVIREI 177 (222)
Q Consensus 151 ---~~~~~~~~sa~~~~~i~~~~~~i~~~~ 177 (222)
...+++++||++|.|+++++.++.+.+
T Consensus 157 ~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 157 RNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred ccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 357799999999999999999888764
No 154
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.88 E-value=6.5e-21 Score=133.87 Aligned_cols=165 Identities=22% Similarity=0.342 Sum_probs=135.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCC--CCCCccceeEEEEEE-EECCeEEEEEEEeCCCcchh-hhhHHHhhcCCCE
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNP--HSKATIGVEFQTQSM-EIDGKEVKAQIWDTAGQERF-RAVTSAYYRGAVG 91 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~~-~~~~~~~~~~~d~ 91 (222)
.-||+++|..++|||+++..|+.+.... +..+|+. +++...+ ..++..-.+.++||.|.... ..+-++++.-+|+
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 4699999999999999999998766533 3445544 3343333 33455557889999997665 6677889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 040481 92 ALIVYDITRRTTFDSISRWLDELKTHSD-TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAF 170 (222)
Q Consensus 92 vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 170 (222)
+++||+..+++||+.+..+-..|....+ ..+|+++++||+|+.+.+++..+.+..|+....+..+++++.+.-.+-+.|
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf 167 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPF 167 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHH
Confidence 9999999999999998777677766543 679999999999999989999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 040481 171 EIVIREIYSNV 181 (222)
Q Consensus 171 ~~i~~~~~~~~ 181 (222)
.+++..+....
T Consensus 168 ~~l~~rl~~pq 178 (198)
T KOG3883|consen 168 TYLASRLHQPQ 178 (198)
T ss_pred HHHHHhccCCc
Confidence 99988776443
No 155
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=1e-20 Score=158.13 Aligned_cols=159 Identities=18% Similarity=0.128 Sum_probs=116.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcch----hhhh---HHHhhcCCC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER----FRAV---TSAYYRGAV 90 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~---~~~~~~~~d 90 (222)
.|+++|.|+||||||+++|++........+.++.......+.+.+ ...+.+||+||... ...+ +...+.+++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 899999999999999999998764333333334444444444431 34578999999632 1122 233456799
Q ss_pred EEEEEEECCCh---hhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCC
Q 040481 91 GALIVYDITRR---TTFDSISRWLDELKTHSD--TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTN 165 (222)
Q Consensus 91 ~vi~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 165 (222)
++|+|+|+++. .+++....|..++..+.. ..+|++||+||+|+.+ ..+....+....+.+++++||+++.|
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~iSA~tgeG 314 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPISALTGQG 314 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEEeCCCCCC
Confidence 99999999864 677888888888877654 4689999999999843 13345556666678899999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 040481 166 VKSAFEIVIREIYSNV 181 (222)
Q Consensus 166 i~~~~~~i~~~~~~~~ 181 (222)
++++++++.+.+.+..
T Consensus 315 I~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 315 LDELLYAVAELLEETP 330 (424)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999988776543
No 156
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.87 E-value=3e-21 Score=142.25 Aligned_cols=143 Identities=17% Similarity=0.212 Sum_probs=100.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcc----hhhhhHHHhhcCCCEEE
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE----RFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~d~vi 93 (222)
+|+++|.+++|||||+++|.+... ...++ ..+.+... .+||+||.. .+.......+..+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~--~~~~~-------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT--LARKT-------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc--cCccc-------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 799999999999999999876431 11122 12222222 279999962 22222233478999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCC--eEEEEccCCCCCHHHHHH
Q 040481 94 IVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGL--FFMETSALDSTNVKSAFE 171 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~sa~~~~~i~~~~~ 171 (222)
+|+|+++..++ +..|+..+ ....|+++++||.|+.+ ...+...+++...+. +++++||++|.|++++|+
T Consensus 70 ~v~d~~~~~s~--~~~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 70 YVHGANDPESR--LPAGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred EEEeCCCcccc--cCHHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 99999988765 23344433 13568999999999864 234556677777764 899999999999999999
Q ss_pred HHHHHHHHHhh
Q 040481 172 IVIREIYSNVS 182 (222)
Q Consensus 172 ~i~~~~~~~~~ 182 (222)
++.+.+.+...
T Consensus 141 ~l~~~~~~~~~ 151 (158)
T PRK15467 141 YLASLTKQEEA 151 (158)
T ss_pred HHHHhchhhhc
Confidence 88886655443
No 157
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.87 E-value=8.2e-21 Score=160.38 Aligned_cols=155 Identities=21% Similarity=0.239 Sum_probs=116.6
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhh--------HH
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFN-PHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAV--------TS 83 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~ 83 (222)
....++|+++|++|||||||+|+|++.... ....+.++.++....+.+++ ..+.+|||||...+... ..
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~ 277 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSF 277 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHH
Confidence 345589999999999999999999987542 23335556666666676765 44679999997554321 34
Q ss_pred HhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCC
Q 040481 84 AYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDS 163 (222)
Q Consensus 84 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (222)
.+++.+|++|+|||++++.+++.. |+..+.. .+.|+++|+||+|+... ....++..++.+++++||++
T Consensus 278 ~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~- 345 (442)
T TIGR00450 278 KAIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ- 345 (442)
T ss_pred HHHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-
Confidence 578999999999999998887664 6665533 35799999999999643 12345666778899999998
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 040481 164 TNVKSAFEIVIREIYSNV 181 (222)
Q Consensus 164 ~~i~~~~~~i~~~~~~~~ 181 (222)
.||+++|+.+.+.+.+..
T Consensus 346 ~gI~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 346 LKIKALVDLLTQKINAFY 363 (442)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 699999999988776554
No 158
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.87 E-value=2.3e-21 Score=147.42 Aligned_cols=158 Identities=15% Similarity=0.101 Sum_probs=102.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCc----CCC---CCCCccceeEEEEEEEEC------------CeEEEEEEEeCCCcch
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNE----FNP---HSKATIGVEFQTQSMEID------------GKEVKAQIWDTAGQER 77 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~----~~~---~~~~~~~~~~~~~~~~~~------------~~~~~~~i~D~~G~~~ 77 (222)
++|+++|++++|||||+++|+... +.. +..+.++.+.....+.+. +..+.+.+||+||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 589999999999999999998731 111 112222333333333332 3367889999999876
Q ss_pred hhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC--CHHHHHHH-HH-----
Q 040481 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNV--STEEGKSL-AE----- 149 (222)
Q Consensus 78 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~-~~----- 149 (222)
+..........+|++++|+|+.++........+. .... .+.|+++|+||+|+...... ..++..+. ..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV-IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH-HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 6444445567789999999998865433332222 1111 24699999999998632221 11222221 11
Q ss_pred -HcCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 040481 150 -AEGLFFMETSALDSTNVKSAFEIVIREIY 178 (222)
Q Consensus 150 -~~~~~~~~~sa~~~~~i~~~~~~i~~~~~ 178 (222)
..+++++++||++|.|++++++++.+++.
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 23678999999999999999998887654
No 159
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.87 E-value=1.3e-21 Score=136.44 Aligned_cols=158 Identities=22% Similarity=0.354 Sum_probs=124.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEE
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIV 95 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 95 (222)
.+.+.++|-.++|||||++.+..+.+...-.|+.|..... ++...+.+.+||.||+..+..+|..|++.+++++||
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk----~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE----eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 4789999999999999999999888877777887654432 445567788999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHH-HHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHH-----HHcCCeEEEEccCCCCCHHHH
Q 040481 96 YDITRRTTFDSISRWLD-ELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLA-----EAEGLFFMETSALDSTNVKSA 169 (222)
Q Consensus 96 ~d~~~~~s~~~~~~~~~-~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~~ 169 (222)
+|+.+++.++.....+. .+....-.++|++|+|||.|+++ .+......+-. ....+-+|.+|+++..||+.+
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~--AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~ 173 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG--ALSKIALIERMGLSSITDREVCCFSISCKEKVNIDIT 173 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcc--cccHHHHHHHhCccccccceEEEEEEEEcCCccHHHH
Confidence 99999988877755444 44444458899999999999874 23333222111 122345899999999999999
Q ss_pred HHHHHHHHHH
Q 040481 170 FEIVIREIYS 179 (222)
Q Consensus 170 ~~~i~~~~~~ 179 (222)
.+|++++--.
T Consensus 174 ~~Wli~hsk~ 183 (186)
T KOG0075|consen 174 LDWLIEHSKS 183 (186)
T ss_pred HHHHHHHhhh
Confidence 9999987543
No 160
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.87 E-value=6.7e-21 Score=165.50 Aligned_cols=156 Identities=16% Similarity=0.178 Sum_probs=111.7
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCE
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 91 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 91 (222)
...+.++|+++|+.++|||||+++|.+..+.....+.++.++....+.+++. ..+.||||||++.|..++...+..+|+
T Consensus 83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDi 161 (587)
T TIGR00487 83 LVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDI 161 (587)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCE
Confidence 3456689999999999999999999988776555444444444444444332 267899999999999988888999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH-------c--CCeEEEEccCC
Q 040481 92 ALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEA-------E--GLFFMETSALD 162 (222)
Q Consensus 92 vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-------~--~~~~~~~sa~~ 162 (222)
+|+|||++++..-..... +. .....++|+++++||+|+... ..+........ + ..+++++||++
T Consensus 162 aILVVda~dgv~~qT~e~-i~---~~~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAkt 234 (587)
T TIGR00487 162 VVLVVAADDGVMPQTIEA-IS---HAKAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALT 234 (587)
T ss_pred EEEEEECCCCCCHhHHHH-HH---HHHHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCC
Confidence 999999987532111111 22 222356899999999998642 22333333222 2 25799999999
Q ss_pred CCCHHHHHHHHHH
Q 040481 163 STNVKSAFEIVIR 175 (222)
Q Consensus 163 ~~~i~~~~~~i~~ 175 (222)
|.|++++|+++..
T Consensus 235 GeGI~eLl~~I~~ 247 (587)
T TIGR00487 235 GDGIDELLDMILL 247 (587)
T ss_pred CCChHHHHHhhhh
Confidence 9999999998864
No 161
>PRK15494 era GTPase Era; Provisional
Probab=99.87 E-value=5.9e-21 Score=156.68 Aligned_cols=156 Identities=22% Similarity=0.303 Sum_probs=107.2
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCC-CCccceeEEEEEEEECCeEEEEEEEeCCCcchh-hhh-------HHH
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHS-KATIGVEFQTQSMEIDGKEVKAQIWDTAGQERF-RAV-------TSA 84 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~-------~~~ 84 (222)
...++|+++|.+|||||||+++|.+..+.... .+.++.+.....+..++ .++.+|||||.... ... ...
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 45679999999999999999999988764322 22223333334444444 46789999997432 111 123
Q ss_pred hhcCCCEEEEEEECCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcC--CeEEEEccC
Q 040481 85 YYRGAVGALIVYDITRRTTFDSIS-RWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEG--LFFMETSAL 161 (222)
Q Consensus 85 ~~~~~d~vi~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~sa~ 161 (222)
.+..+|++++|+|..+. +.... .|+..+... +.|.++|+||+|+.+. ...++.+++...+ ..++++||+
T Consensus 128 ~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk 199 (339)
T PRK15494 128 SLHSADLVLLIIDSLKS--FDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL 199 (339)
T ss_pred HhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence 47899999999997664 44443 355555432 3577899999998642 2344555555443 679999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 040481 162 DSTNVKSAFEIVIREIYS 179 (222)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~ 179 (222)
+|.|++++|++|...+.+
T Consensus 200 tg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 200 SGKNIDGLLEYITSKAKI 217 (339)
T ss_pred CccCHHHHHHHHHHhCCC
Confidence 999999999999886543
No 162
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.87 E-value=1.1e-20 Score=164.71 Aligned_cols=157 Identities=22% Similarity=0.271 Sum_probs=116.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcC-------CCCCCC------ccceeEEEEEEEE-----CCeEEEEEEEeCCCcch
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEF-------NPHSKA------TIGVEFQTQSMEI-----DGKEVKAQIWDTAGQER 77 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~-------~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~~~ 77 (222)
.-+++++|+.++|||||+++|+.... ...+.. ..+.++....+.+ ++..+.+++|||||+..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 34899999999999999999987521 111111 1244444333322 45678899999999999
Q ss_pred hhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCC---e
Q 040481 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGL---F 154 (222)
Q Consensus 78 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~ 154 (222)
|...+..+++.+|++|+|||++++.+......|...+. .++|+++|+||+|+.... ..+...++...+++ .
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~ 156 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE 156 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence 99889999999999999999999877776666655442 357999999999986422 12233455555555 4
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHH
Q 040481 155 FMETSALDSTNVKSAFEIVIREIY 178 (222)
Q Consensus 155 ~~~~sa~~~~~i~~~~~~i~~~~~ 178 (222)
++++||++|.|++++|+.|.+.+.
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhCC
Confidence 899999999999999999887654
No 163
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.87 E-value=5.6e-21 Score=140.08 Aligned_cols=146 Identities=19% Similarity=0.120 Sum_probs=100.7
Q ss_pred EEEcCCCCCHHHHHHHHhcCcCC-CCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhh--------hHHHhhcCCC
Q 040481 20 VIIGDSAVGKSNLLSRYARNEFN-PHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRA--------VTSAYYRGAV 90 (222)
Q Consensus 20 ~i~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~d 90 (222)
+++|.+|+|||||+++|.+.... ....+.++.+........++ ..+.+|||||...+.. .+...++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 47999999999999999987532 12223333444444444444 5678999999877433 3345678899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCC-eEEEEccCCCCCHHHH
Q 040481 91 GALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGL-FFMETSALDSTNVKSA 169 (222)
Q Consensus 91 ~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~ 169 (222)
++++|+|+.++.+.... .+...+.. .+.|+++|+||+|+.+.... .......+. .++++|++++.|++++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence 99999999876544332 22233322 34799999999998753222 222334555 6899999999999999
Q ss_pred HHHHHHH
Q 040481 170 FEIVIRE 176 (222)
Q Consensus 170 ~~~i~~~ 176 (222)
|++++++
T Consensus 150 ~~~l~~~ 156 (157)
T cd01894 150 LDAILEL 156 (157)
T ss_pred HHHHHhh
Confidence 9998875
No 164
>PRK11058 GTPase HflX; Provisional
Probab=99.87 E-value=1.3e-20 Score=158.36 Aligned_cols=158 Identities=16% Similarity=0.136 Sum_probs=112.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcch--hhhhH------HHhhcC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER--FRAVT------SAYYRG 88 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~------~~~~~~ 88 (222)
++|+++|.++||||||+|+|++........+..+.+.....+.+.+. ..+.+|||+|... ....+ ...+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 68999999999999999999987654434444455555555555542 2467999999732 12222 234688
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCe-EEEEccCCCCCHH
Q 040481 89 AVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLF-FMETSALDSTNVK 167 (222)
Q Consensus 89 ~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~ 167 (222)
+|++|+|+|++++.+++.+..|...+......++|+++|+||+|+.+... . ... ....+.+ ++.+||++|.|++
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~--~-~~~--~~~~~~~~~v~ISAktG~GId 351 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE--P-RID--RDEENKPIRVWLSAQTGAGIP 351 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh--H-HHH--HHhcCCCceEEEeCCCCCCHH
Confidence 99999999999998888776665555554445689999999999864211 1 111 1123444 5889999999999
Q ss_pred HHHHHHHHHHHHH
Q 040481 168 SAFEIVIREIYSN 180 (222)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (222)
++++++.+.+...
T Consensus 352 eL~e~I~~~l~~~ 364 (426)
T PRK11058 352 LLFQALTERLSGE 364 (426)
T ss_pred HHHHHHHHHhhhc
Confidence 9999999887543
No 165
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.86 E-value=1.3e-20 Score=160.04 Aligned_cols=167 Identities=28% Similarity=0.223 Sum_probs=111.4
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCC-CCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhh-----------h
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNP-HSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRA-----------V 81 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~ 81 (222)
...++|+++|.+++|||||+++|++..... ...+.++.+.....+..++. .+.+|||||...... .
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence 456899999999999999999999876432 22333344443344444543 577999999643321 1
Q ss_pred HHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHH-HHHHH----cCCeEE
Q 040481 82 TSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGK-SLAEA----EGLFFM 156 (222)
Q Consensus 82 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~-~~~~~----~~~~~~ 156 (222)
....++.+|++|+|+|+.++.+..... ++..+.. .+.|+++|+||+|+.+. ....+... ..... .+++++
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~vi 322 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKD-EKTREEFKKELRRKLPFLDFAPIV 322 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCC-HHHHHHHHHHHHHhcccCCCCceE
Confidence 234688999999999999987765543 3333332 45799999999999721 11111221 22222 257899
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHhhhhccCC
Q 040481 157 ETSALDSTNVKSAFEIVIREIYSNVSRKVLNS 188 (222)
Q Consensus 157 ~~sa~~~~~i~~~~~~i~~~~~~~~~~~~~~s 188 (222)
++||++|.|++++|+++... ++...++.+++
T Consensus 323 ~~SA~~g~~v~~l~~~i~~~-~~~~~~~i~t~ 353 (429)
T TIGR03594 323 FISALTGQGVDKLLDAIDEV-YENANRRISTS 353 (429)
T ss_pred EEeCCCCCCHHHHHHHHHHH-HHHhcCcCCHH
Confidence 99999999999999988874 44555544443
No 166
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=1.4e-20 Score=159.26 Aligned_cols=162 Identities=16% Similarity=0.087 Sum_probs=113.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcch----h---hhhHHHhhcCC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER----F---RAVTSAYYRGA 89 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~---~~~~~~~~~~~ 89 (222)
..|+|+|.|+||||||+++|++........+.++.......+.+.+ ..+.+||+||... . .......+..+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 4789999999999999999998654433334445555555555554 4678999999531 1 11123356889
Q ss_pred CEEEEEEECCCh----hhHHHHHHHHHHHHhcC-----------CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCe
Q 040481 90 VGALIVYDITRR----TTFDSISRWLDELKTHS-----------DTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLF 154 (222)
Q Consensus 90 d~vi~v~d~~~~----~s~~~~~~~~~~i~~~~-----------~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 154 (222)
|++|+|+|+++. ..+..+..|..++..+. ....|++||+||+|+.+...+ .+.........+++
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~~ 316 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGWP 316 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCCe
Confidence 999999999753 34555555555554443 145899999999999753322 22233334455789
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHHHHh
Q 040481 155 FMETSALDSTNVKSAFEIVIREIYSNV 181 (222)
Q Consensus 155 ~~~~sa~~~~~i~~~~~~i~~~~~~~~ 181 (222)
++++||+++.|+++++.+|.+.+...+
T Consensus 317 Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 317 VFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 999999999999999999998776654
No 167
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.86 E-value=1.1e-20 Score=160.34 Aligned_cols=149 Identities=22% Similarity=0.215 Sum_probs=111.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhh--------HHHh
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFN-PHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAV--------TSAY 85 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 85 (222)
..++|+++|.+++|||||+|+|++.... ....+.++.++....+.+++ ..+.+|||||...+... ....
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 3479999999999999999999987642 23344445566666666665 45789999997654321 2346
Q ss_pred hcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCC
Q 040481 86 YRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTN 165 (222)
Q Consensus 86 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 165 (222)
+..+|++++|||++++.+++....|.. ..+.|+++|+||+|+.+..... ...+.+++++||++|.|
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG 357 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence 889999999999999888775544433 3457999999999996532221 34467799999999999
Q ss_pred HHHHHHHHHHHHHH
Q 040481 166 VKSAFEIVIREIYS 179 (222)
Q Consensus 166 i~~~~~~i~~~~~~ 179 (222)
++++++++.+.+..
T Consensus 358 I~~L~~~L~~~l~~ 371 (449)
T PRK05291 358 IDELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887754
No 168
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=1e-20 Score=161.98 Aligned_cols=155 Identities=21% Similarity=0.201 Sum_probs=109.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCC-CCCCccceeEEEEEEEECCeEEEEEEEeCCCcch--------hhhhHHHh
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNP-HSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER--------FRAVTSAY 85 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~ 85 (222)
..++|+|+|.++||||||+++|++..... ...+..+.+.....+.+.+. .+.+|||||.+. +...+..+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 34799999999999999999999876432 33444455555555555554 477999999652 33445567
Q ss_pred hcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCC
Q 040481 86 YRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTN 165 (222)
Q Consensus 86 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 165 (222)
++.+|++|+|||++++.++.. ..+...+.. .++|+++|+||+|+.... .+....+....+ .++++||++|.|
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~~~g~~-~~~~iSA~~g~g 186 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALWSLGLG-EPHPVSALHGRG 186 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHHhcCCC-CeEEEEcCCCCC
Confidence 899999999999998866533 334444443 458999999999986421 122222222233 357999999999
Q ss_pred HHHHHHHHHHHHHH
Q 040481 166 VKSAFEIVIREIYS 179 (222)
Q Consensus 166 i~~~~~~i~~~~~~ 179 (222)
++++|++++..+.+
T Consensus 187 i~eL~~~i~~~l~~ 200 (472)
T PRK03003 187 VGDLLDAVLAALPE 200 (472)
T ss_pred cHHHHHHHHhhccc
Confidence 99999999987754
No 169
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.86 E-value=8.7e-21 Score=145.42 Aligned_cols=159 Identities=21% Similarity=0.190 Sum_probs=100.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCC---CCCCCccceeEEEEEEEEC---------------------------C----
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFN---PHSKATIGVEFQTQSMEID---------------------------G---- 62 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~---------------------------~---- 62 (222)
++|+++|+.|+|||||+.+|.+.... .+.....+.........+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 47999999999999999999765221 1111111111111111100 0
Q ss_pred eEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC--C
Q 040481 63 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNV--S 140 (222)
Q Consensus 63 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~--~ 140 (222)
....+.|||+||++.+...+...+..+|++++|+|+.++.........+..+... ...|+++|+||+|+...... .
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence 1267889999999998888888888999999999998742111111222222222 12478999999999642221 1
Q ss_pred HHHHHHHHHH---cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 040481 141 TEEGKSLAEA---EGLFFMETSALDSTNVKSAFEIVIREI 177 (222)
Q Consensus 141 ~~~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~i~~~~ 177 (222)
.+.+.++... .+++++++||++|+|++++|+.+.+.+
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 1233333332 267899999999999999999887654
No 170
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=3.1e-20 Score=128.60 Aligned_cols=155 Identities=21% Similarity=0.417 Sum_probs=121.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEE
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIV 95 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 95 (222)
+++|+++|-.++||||++..|.-+. +....||+| +.+..+.+. .+.|++||.+|++..+..|.++|....++|||
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~-~~~~ipTvG--FnvetVtyk--N~kfNvwdvGGqd~iRplWrhYy~gtqglIFV 91 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVG--FNVETVTYK--NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 91 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCC-Ccccccccc--eeEEEEEee--eeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence 6899999999999999999987654 233445555 445555454 57788999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH-----cCCeEEEEccCCCCCHHHH
Q 040481 96 YDITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLAEA-----EGLFFMETSALDSTNVKSA 169 (222)
Q Consensus 96 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~~ 169 (222)
+|..++.-++++...+-.+.... -...|++|.+||.|+++ ....+++..+... ..+.+.+++|.+|.|+.+-
T Consensus 92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~--A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eg 169 (180)
T KOG0071|consen 92 VDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPD--AMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEG 169 (180)
T ss_pred EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccc--ccCHHHHHHHhccccccCCccEeeccccccchhHHHH
Confidence 99999988888755444443333 36688888899999984 4556666555433 3456889999999999999
Q ss_pred HHHHHHHH
Q 040481 170 FEIVIREI 177 (222)
Q Consensus 170 ~~~i~~~~ 177 (222)
|.|+.+.+
T Consensus 170 lswlsnn~ 177 (180)
T KOG0071|consen 170 LSWLSNNL 177 (180)
T ss_pred HHHHHhhc
Confidence 99998764
No 171
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=5.3e-20 Score=153.03 Aligned_cols=161 Identities=20% Similarity=0.129 Sum_probs=115.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcch-------hhhhHHHhhcCCC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER-------FRAVTSAYYRGAV 90 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~d 90 (222)
.|+|+|.|+||||||+|+|++........|.++.......+.+.+ ...+.++|+||... ........+..+|
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 789999999999999999998765434444445455555555542 23477999999643 1112234578999
Q ss_pred EEEEEEECC---ChhhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcC--CeEEEEccCCC
Q 040481 91 GALIVYDIT---RRTTFDSISRWLDELKTHSD--TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEG--LFFMETSALDS 163 (222)
Q Consensus 91 ~vi~v~d~~---~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~ 163 (222)
++++|+|++ ....++....|+..+..... ...|+++|+||+|+.....+ .+....+....+ .+++++||+++
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAASG 318 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCCC
Confidence 999999998 45667777888888776543 45799999999998653322 233444444443 46899999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 040481 164 TNVKSAFEIVIREIYSN 180 (222)
Q Consensus 164 ~~i~~~~~~i~~~~~~~ 180 (222)
.|++++++.|.+.+.+.
T Consensus 319 ~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 319 LGVKELCWDLMTFIEEN 335 (390)
T ss_pred cCHHHHHHHHHHHhhhC
Confidence 99999999998877553
No 172
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.85 E-value=4.6e-20 Score=136.12 Aligned_cols=156 Identities=21% Similarity=0.129 Sum_probs=103.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhh--------hhHHHhhc
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFR--------AVTSAYYR 87 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~ 87 (222)
..+|+++|++|+|||||++++++................ ....+......+.+||+||..... ......+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNR-IRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceece-EEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 578999999999999999999987653322211111111 112233334668899999965332 23345688
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHc-CCeEEEEccCCCCCH
Q 040481 88 GAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAE-GLFFMETSALDSTNV 166 (222)
Q Consensus 88 ~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i 166 (222)
.+|++++|+|+.++.+. ....+...+.. .+.|+++|+||+|+........+....+.... ..+++++|++++.|+
T Consensus 82 ~~d~i~~v~d~~~~~~~-~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 82 DVDLVLFVVDASEPIGE-GDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred hCCEEEEEEECCCccCc-hHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 89999999999987221 11223333333 25799999999999743333333344444444 368999999999999
Q ss_pred HHHHHHHHHH
Q 040481 167 KSAFEIVIRE 176 (222)
Q Consensus 167 ~~~~~~i~~~ 176 (222)
+++++.|.+.
T Consensus 158 ~~l~~~l~~~ 167 (168)
T cd04163 158 DELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhh
Confidence 9999988764
No 173
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.85 E-value=3.2e-20 Score=163.66 Aligned_cols=157 Identities=20% Similarity=0.197 Sum_probs=111.9
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccce--eEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCC
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGV--EFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAV 90 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 90 (222)
..+.+.|+++|+.++|||||+++|....+.....+.++. ..+...+..++....+.||||||++.|..++..++..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 456689999999999999999999887665443333332 223333334445678999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHH-------HHHcC--CeEEEEccC
Q 040481 91 GALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSL-------AEAEG--LFFMETSAL 161 (222)
Q Consensus 91 ~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-------~~~~~--~~~~~~sa~ 161 (222)
++|+|||++++..-.....| ..+ ...++|+++++||+|+.... .+.+... ...++ ++++++||+
T Consensus 321 iaILVVDA~dGv~~QT~E~I-~~~---k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAk 393 (742)
T CHL00189 321 IAILIIAADDGVKPQTIEAI-NYI---QAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISAS 393 (742)
T ss_pred EEEEEEECcCCCChhhHHHH-HHH---HhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECC
Confidence 99999999885332222222 222 23568999999999986422 2222111 22233 689999999
Q ss_pred CCCCHHHHHHHHHHH
Q 040481 162 DSTNVKSAFEIVIRE 176 (222)
Q Consensus 162 ~~~~i~~~~~~i~~~ 176 (222)
+|.|++++|+.++..
T Consensus 394 tG~GIdeLle~I~~l 408 (742)
T CHL00189 394 QGTNIDKLLETILLL 408 (742)
T ss_pred CCCCHHHHHHhhhhh
Confidence 999999999988765
No 174
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.85 E-value=5.4e-20 Score=163.51 Aligned_cols=156 Identities=18% Similarity=0.206 Sum_probs=111.5
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCE
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 91 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 91 (222)
...+.+.|+|+|+.++|||||+++|....+.......++.+.....+.+++ ..+.||||||++.|..++...+..+|+
T Consensus 286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDi 363 (787)
T PRK05306 286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDI 363 (787)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCE
Confidence 456778999999999999999999988776544444333333333444444 568899999999999999888999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHH-------HHHHcC--CeEEEEccCC
Q 040481 92 ALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKS-------LAEAEG--LFFMETSALD 162 (222)
Q Consensus 92 vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~-------~~~~~~--~~~~~~sa~~ 162 (222)
+|+|||++++..- ++...+......++|+||++||+|+.... .+.+.. ++..++ ++++++||++
T Consensus 364 aILVVdAddGv~~----qT~e~i~~a~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAkt 436 (787)
T PRK05306 364 VVLVVAADDGVMP----QTIEAINHAKAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKT 436 (787)
T ss_pred EEEEEECCCCCCH----hHHHHHHHHHhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCC
Confidence 9999999885321 11112222223568999999999996421 111111 122333 7899999999
Q ss_pred CCCHHHHHHHHHHH
Q 040481 163 STNVKSAFEIVIRE 176 (222)
Q Consensus 163 ~~~i~~~~~~i~~~ 176 (222)
|.|++++|++|...
T Consensus 437 G~GI~eLle~I~~~ 450 (787)
T PRK05306 437 GEGIDELLEAILLQ 450 (787)
T ss_pred CCCchHHHHhhhhh
Confidence 99999999988753
No 175
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.85 E-value=2.9e-20 Score=162.07 Aligned_cols=153 Identities=17% Similarity=0.163 Sum_probs=113.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCc---CCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNE---FNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
+.|+++|++++|||||+++|++.. +..++.++++.++....+..++ ..+.+||+||++.|.......+..+|++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 468999999999999999999743 3344455556666655565555 67889999999999888888899999999
Q ss_pred EEEECCCh---hhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCcCCCC--CHHHHHHHHHHc----CCeEEEEccCCC
Q 040481 94 IVYDITRR---TTFDSISRWLDELKTHSDTTVA-RMLVGNKCDLESIRNV--STEEGKSLAEAE----GLFFMETSALDS 163 (222)
Q Consensus 94 ~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~----~~~~~~~sa~~~ 163 (222)
+|+|++++ ++++.+ ..+.. .++| ++||+||+|+.+...+ ..+++.++.... +++++++||++|
T Consensus 79 LVVDa~~G~~~qT~ehl----~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL----AVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EEEECCCCCcHHHHHHH----HHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 99999984 443332 22322 3467 8999999999754332 123444555443 578999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 040481 164 TNVKSAFEIVIREIY 178 (222)
Q Consensus 164 ~~i~~~~~~i~~~~~ 178 (222)
.|+++++..+...+.
T Consensus 152 ~GI~eL~~~L~~l~~ 166 (581)
T TIGR00475 152 QGIGELKKELKNLLE 166 (581)
T ss_pred CCchhHHHHHHHHHH
Confidence 999999998776544
No 176
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.85 E-value=4.2e-20 Score=140.71 Aligned_cols=160 Identities=16% Similarity=0.170 Sum_probs=104.4
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCc----------chhhhh
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ----------ERFRAV 81 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~ 81 (222)
+.+..++|+++|++|+|||||+++|.+..+.....++.+.+........ ...+.+||+||. +.+...
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~ 96 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKL 96 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence 4456689999999999999999999987644444444444433333222 256889999994 233334
Q ss_pred HHHhhcCC---CEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCC--HHHHHHHHHHcCCeEE
Q 040481 82 TSAYYRGA---VGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVS--TEEGKSLAEAEGLFFM 156 (222)
Q Consensus 82 ~~~~~~~~---d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~ 156 (222)
...++..+ +++++|+|..++.+.... .+...+. ..++|+++++||.|+....... .+.+.........+++
T Consensus 97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~ 172 (196)
T PRK00454 97 IEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLK---EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI 172 (196)
T ss_pred HHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHH---HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE
Confidence 44455544 678889998876543221 1122222 2457899999999986432211 1223334444467899
Q ss_pred EEccCCCCCHHHHHHHHHHHHH
Q 040481 157 ETSALDSTNVKSAFEIVIREIY 178 (222)
Q Consensus 157 ~~sa~~~~~i~~~~~~i~~~~~ 178 (222)
++||+++.|++++++.|...+.
T Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 173 LFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred EEEcCCCCCHHHHHHHHHHHhc
Confidence 9999999999999998876553
No 177
>PRK00089 era GTPase Era; Reviewed
Probab=99.85 E-value=5.6e-20 Score=148.59 Aligned_cols=158 Identities=20% Similarity=0.172 Sum_probs=104.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchh--------hhhHHHhhc
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERF--------RAVTSAYYR 87 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~~~~~~~ 87 (222)
.-.|+++|++|||||||+|+|++...........++......+... ....+.+|||||.... .......+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 3569999999999999999999987644332222222222222222 2367889999996432 223344678
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHc-CCeEEEEccCCCCCH
Q 040481 88 GAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAE-GLFFMETSALDSTNV 166 (222)
Q Consensus 88 ~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i 166 (222)
.+|++++|+|+++..+- .....+..+. ..+.|+++|+||+|+.............+.... ..+++++||+++.|+
T Consensus 84 ~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv 159 (292)
T PRK00089 84 DVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNV 159 (292)
T ss_pred cCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCH
Confidence 89999999999884321 1122223333 235799999999999743222333444444433 367999999999999
Q ss_pred HHHHHHHHHHHH
Q 040481 167 KSAFEIVIREIY 178 (222)
Q Consensus 167 ~~~~~~i~~~~~ 178 (222)
+++++++.+.+.
T Consensus 160 ~~L~~~L~~~l~ 171 (292)
T PRK00089 160 DELLDVIAKYLP 171 (292)
T ss_pred HHHHHHHHHhCC
Confidence 999999888764
No 178
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.85 E-value=1.3e-19 Score=134.85 Aligned_cols=154 Identities=27% Similarity=0.222 Sum_probs=102.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCC-CCCCccceeEEEEEEEECCeEEEEEEEeCCCcchh----------h-hhHH
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNP-HSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERF----------R-AVTS 83 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------~-~~~~ 83 (222)
.++|+++|++|+|||||+++|.+..... ...+..+.......+..++. .+.+||+||.... . ....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence 4799999999999999999999876432 22233333333334444543 3679999996432 1 1123
Q ss_pred HhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHH-HHHHHHHc----CCeEEEE
Q 040481 84 AYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEE-GKSLAEAE----GLFFMET 158 (222)
Q Consensus 84 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~-~~~~~~~~----~~~~~~~ 158 (222)
..+..+|++++|+|+.++.+.... .++..+.. .+.|+++++||+|+.+......+. ...+.... ..+++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 456789999999999998775443 23333322 347999999999987543222222 22222333 3679999
Q ss_pred ccCCCCCHHHHHHHHHH
Q 040481 159 SALDSTNVKSAFEIVIR 175 (222)
Q Consensus 159 sa~~~~~i~~~~~~i~~ 175 (222)
||+++.|+.++++.+.+
T Consensus 156 Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 156 SALTGQGVDKLFDAIDE 172 (174)
T ss_pred eccCCCCHHHHHHHHHH
Confidence 99999999999997765
No 179
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.84 E-value=3.6e-20 Score=139.31 Aligned_cols=149 Identities=17% Similarity=0.199 Sum_probs=97.8
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcc----------hhhhh
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE----------RFRAV 81 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~ 81 (222)
++...++|+|+|++|+|||||+++|.+..+.....++.+.+.....+..++ .+.+||+||.. .+...
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence 456778999999999999999999998764333333433333333333332 47899999942 23333
Q ss_pred HHHhhc---CCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC--CCHHHHHHHHHHcC--Ce
Q 040481 82 TSAYYR---GAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRN--VSTEEGKSLAEAEG--LF 154 (222)
Q Consensus 82 ~~~~~~---~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~--~~ 154 (222)
...+++ .++++++|+|+..+.+.... .++..+.. .++|+++++||+|+.+... ...++++......+ +.
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~ 166 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPS 166 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCc
Confidence 444554 35799999999886554443 23333332 4579999999999864221 12233444444443 47
Q ss_pred EEEEccCCCCCHH
Q 040481 155 FMETSALDSTNVK 167 (222)
Q Consensus 155 ~~~~sa~~~~~i~ 167 (222)
++++||++|+|++
T Consensus 167 v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 167 VQLFSSLKKTGID 179 (179)
T ss_pred eEEEECCCCCCCC
Confidence 9999999999973
No 180
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.1e-20 Score=137.42 Aligned_cols=163 Identities=28% Similarity=0.532 Sum_probs=142.2
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
...++++++|+.|.||||++++++.+++...+.++.+.+.......-+...+.+..||+.|++.+......+|-...+.|
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 46789999999999999999999999999999999998888777655555689999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 040481 94 IVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIV 173 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 173 (222)
++||+..+.++.++..|...+.+.+.+ +|++++|||.|..+.. .......+....++.|+++||+.+-|....|.|+
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~~N-iPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~L 164 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVREN-IPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWL 164 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHhcC-CCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHH
Confidence 999999999999999999999888866 9999999999986432 1222334667778999999999999999999999
Q ss_pred HHHHHH
Q 040481 174 IREIYS 179 (222)
Q Consensus 174 ~~~~~~ 179 (222)
.+++.-
T Consensus 165 arKl~G 170 (216)
T KOG0096|consen 165 ARKLTG 170 (216)
T ss_pred hhhhcC
Confidence 987653
No 181
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.84 E-value=1.2e-20 Score=143.12 Aligned_cols=159 Identities=22% Similarity=0.217 Sum_probs=107.1
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCCC------------------CCccceeEEEEEEEECCeEEEEEEEeCCCcc
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHS------------------KATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 76 (222)
..++|+++|+.++|||||+.+|+........ ....+................+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4579999999999999999999865422111 1112233333333312445678899999999
Q ss_pred hhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC--CCHHHHHHHHHHc---
Q 040481 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRN--VSTEEGKSLAEAE--- 151 (222)
Q Consensus 77 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~--- 151 (222)
.|.......+..+|++|+|+|+.++.... ..+.+..+.. .++|+++|+||+|+...+. ...+....+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred ceeecccceecccccceeeeecccccccc-cccccccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence 99888888899999999999999875422 2333333333 4578999999999872111 1111111332222
Q ss_pred ---CCeEEEEccCCCCCHHHHHHHHHHHH
Q 040481 152 ---GLFFMETSALDSTNVKSAFEIVIREI 177 (222)
Q Consensus 152 ---~~~~~~~sa~~~~~i~~~~~~i~~~~ 177 (222)
.++++++||.+|.|++++++.+.+.+
T Consensus 158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 158 GEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 36799999999999999999887754
No 182
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=1.7e-19 Score=153.48 Aligned_cols=146 Identities=21% Similarity=0.172 Sum_probs=105.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCccceeEEEEEEEECCeEEEEEEEeCCCcch--------hhhhHHHhhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFN-PHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER--------FRAVTSAYYR 87 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~ 87 (222)
++|+++|.+|||||||+++|.+.... ....+..+.+.....+.+++ ..+.+|||||... +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999987642 22234445555566666665 6688999999876 2333456788
Q ss_pred CCCEEEEEEECCChhhHH--HHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCe-EEEEccCCCC
Q 040481 88 GAVGALIVYDITRRTTFD--SISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLF-FMETSALDST 164 (222)
Q Consensus 88 ~~d~vi~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~ 164 (222)
.+|++|+|+|+.++.+.. .+..|+.. .+.|+++|+||+|+.+. .+...++ ..++.. ++++||.+|.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~------~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRK------SNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence 999999999998865432 22334332 25799999999997541 1222333 344553 8999999999
Q ss_pred CHHHHHHHHHH
Q 040481 165 NVKSAFEIVIR 175 (222)
Q Consensus 165 ~i~~~~~~i~~ 175 (222)
|+.++|+.+..
T Consensus 149 gv~~l~~~I~~ 159 (435)
T PRK00093 149 GIGDLLDAILE 159 (435)
T ss_pred CHHHHHHHHHh
Confidence 99999998877
No 183
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.83 E-value=1.7e-19 Score=157.50 Aligned_cols=146 Identities=18% Similarity=0.201 Sum_probs=108.9
Q ss_pred cCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhh------HHHhh--cCCCEEEE
Q 040481 23 GDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAV------TSAYY--RGAVGALI 94 (222)
Q Consensus 23 G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~vi~ 94 (222)
|++|||||||+|+|.+........+..+.+.....+.+++. .+++||+||...+... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 89999999999999988765555566666666666666654 4689999998766432 33333 47899999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 040481 95 VYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVI 174 (222)
Q Consensus 95 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 174 (222)
|+|+++.+. ...+...+ .+.++|+++|+||+|+.+...+. .+.+.+.+..+++++++||++|.|++++++.+.
T Consensus 79 VvDat~ler---~l~l~~ql---~~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 79 VVDASNLER---NLYLTLQL---LELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EecCCcchh---hHHHHHHH---HhcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 999987532 12222222 23468999999999997544444 346778888999999999999999999999988
Q ss_pred HHH
Q 040481 175 REI 177 (222)
Q Consensus 175 ~~~ 177 (222)
+.+
T Consensus 152 ~~~ 154 (591)
T TIGR00437 152 KAI 154 (591)
T ss_pred HHh
Confidence 753
No 184
>COG1159 Era GTPase [General function prediction only]
Probab=99.83 E-value=2.1e-19 Score=140.41 Aligned_cols=160 Identities=21% Similarity=0.143 Sum_probs=110.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcch--------hhhhHHHhh
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER--------FRAVTSAYY 86 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~ 86 (222)
+.--|+|+|.|+||||||+|+|.+....-.+....++.-.+..+.-. ...++.|+||||... ........+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~-~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTT-DNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEc-CCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 34579999999999999999999999876655444444444444333 367888999999432 223344567
Q ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHc-CCeEEEEccCCCCC
Q 040481 87 RGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAE-GLFFMETSALDSTN 165 (222)
Q Consensus 87 ~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~ 165 (222)
..+|+++||+|+++...- .....++.+.. ...|+++++||.|..............+.... ...++++||++|.|
T Consensus 84 ~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n 159 (298)
T COG1159 84 KDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDN 159 (298)
T ss_pred ccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCC
Confidence 899999999999986431 11223333433 45799999999998754442222233222222 34699999999999
Q ss_pred HHHHHHHHHHHHHH
Q 040481 166 VKSAFEIVIREIYS 179 (222)
Q Consensus 166 i~~~~~~i~~~~~~ 179 (222)
++.+.+.+...+.+
T Consensus 160 ~~~L~~~i~~~Lpe 173 (298)
T COG1159 160 VDTLLEIIKEYLPE 173 (298)
T ss_pred HHHHHHHHHHhCCC
Confidence 99999877776543
No 185
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.82 E-value=1.8e-19 Score=131.69 Aligned_cols=151 Identities=21% Similarity=0.161 Sum_probs=103.3
Q ss_pred EEcCCCCCHHHHHHHHhcCcCC-CCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhh-------hhHHHhhcCCCEE
Q 040481 21 IIGDSAVGKSNLLSRYARNEFN-PHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFR-------AVTSAYYRGAVGA 92 (222)
Q Consensus 21 i~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d~v 92 (222)
++|++|+|||||+++|.+.... ....+..+............ ...+.+||+||..... .....++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999987654 22233323233333332221 4567899999976543 2444578999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHH---HHHHHHHHcCCeEEEEccCCCCCHHHH
Q 040481 93 LIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTE---EGKSLAEAEGLFFMETSALDSTNVKSA 169 (222)
Q Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~~sa~~~~~i~~~ 169 (222)
++|+|+.+........ +..... ....|+++|+||.|+......... .........+++++++|+.++.|+.++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999987755544 333332 245799999999998754332221 122334445788999999999999999
Q ss_pred HHHHHHH
Q 040481 170 FEIVIRE 176 (222)
Q Consensus 170 ~~~i~~~ 176 (222)
++++.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9988764
No 186
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=6.2e-20 Score=131.66 Aligned_cols=160 Identities=23% Similarity=0.366 Sum_probs=120.1
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcC------C-CCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhc
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEF------N-PHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYR 87 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 87 (222)
..+.|+|+|..++|||||+.++..... + ....++.+ ....++...+ -.+.+||.+|++...++|..+|.
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvg--Lnig~i~v~~--~~l~fwdlgGQe~lrSlw~~yY~ 91 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVG--LNIGTIEVCN--APLSFWDLGGQESLRSLWKKYYW 91 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccc--eeecceeecc--ceeEEEEcCChHHHHHHHHHHHH
Confidence 346899999999999999998854321 1 11223333 4444444453 45779999999999999999999
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHh-cCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH------HcCCeEEEEcc
Q 040481 88 GAVGALIVYDITRRTTFDSISRWLDELKT-HSDTTVARMLVGNKCDLESIRNVSTEEGKSLAE------AEGLFFMETSA 160 (222)
Q Consensus 88 ~~d~vi~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~sa 160 (222)
.++++|++||+++++-|+....-++.+.. ..-.++|+++.+||.|+.+. ....+++.... ...+++.++||
T Consensus 92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~--~~~~El~~~~~~~e~~~~rd~~~~pvSa 169 (197)
T KOG0076|consen 92 LAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA--MEAAELDGVFGLAELIPRRDNPFQPVSA 169 (197)
T ss_pred HhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh--hhHHHHHHHhhhhhhcCCccCccccchh
Confidence 99999999999999988887665555443 33478999999999999753 33333333222 23567999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 040481 161 LDSTNVKSAFEIVIREIYSN 180 (222)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~~ 180 (222)
.+|+||++..+|+...+.++
T Consensus 170 l~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 170 LTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhcccHHHHHHHHHHHHhhc
Confidence 99999999999999988766
No 187
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=2.4e-19 Score=152.48 Aligned_cols=166 Identities=27% Similarity=0.218 Sum_probs=108.4
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchh----------hh-h
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFN-PHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERF----------RA-V 81 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------~~-~ 81 (222)
...++|+++|.+++|||||+++|++.... ....+.++.+.....+..++ ..+.+|||||.... .. .
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 34699999999999999999999986532 22233333333333343444 44679999995321 11 1
Q ss_pred HHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHH----HHcCCeEEE
Q 040481 82 TSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLA----EAEGLFFME 157 (222)
Q Consensus 82 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~ 157 (222)
....++.+|++|+|+|+.++.+..... +...+.. .+.|+++|+||+|+.+... ..+...... ....+++++
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~-~~~~~~~~~~~l~~~~~~~i~~ 323 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKT-MEEFKKELRRRLPFLDYAPIVF 323 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHH-HHHHHHHHHHhcccccCCCEEE
Confidence 234678999999999999987755442 3333332 3579999999999873221 111111122 223578999
Q ss_pred EccCCCCCHHHHHHHHHHHHHHHhhhhccC
Q 040481 158 TSALDSTNVKSAFEIVIREIYSNVSRKVLN 187 (222)
Q Consensus 158 ~sa~~~~~i~~~~~~i~~~~~~~~~~~~~~ 187 (222)
+||++|.|+.++++.+.+. ++...++.++
T Consensus 324 ~SA~~~~gv~~l~~~i~~~-~~~~~~~i~t 352 (435)
T PRK00093 324 ISALTGQGVDKLLEAIDEA-YENANRRIST 352 (435)
T ss_pred EeCCCCCCHHHHHHHHHHH-HHHHcCcCCh
Confidence 9999999999999987764 4444444443
No 188
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.82 E-value=8.6e-19 Score=153.15 Aligned_cols=159 Identities=20% Similarity=0.255 Sum_probs=113.1
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCC--C-----CC------CCccceeEEEEEEE--E---CCeEEEEEEEeCCCcc
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFN--P-----HS------KATIGVEFQTQSME--I---DGKEVKAQIWDTAGQE 76 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~--~-----~~------~~~~~~~~~~~~~~--~---~~~~~~~~i~D~~G~~ 76 (222)
...+++|+|+.++|||||+.+|+..... . .. ....+.++....+. + ++..+.+++|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 3458999999999999999999763211 0 00 01123333322222 2 4557889999999999
Q ss_pred hhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCe--
Q 040481 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLF-- 154 (222)
Q Consensus 77 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-- 154 (222)
.+...+..+++.+|++|+|+|++++........|.... ..++|+++|+||+|+.... ......++...+++.
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~ 159 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAAD--PERVKQEIEDVIGIDAS 159 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCccc--HHHHHHHHHHHhCCCcc
Confidence 99988899999999999999999876655555554433 2357999999999986422 122233444445543
Q ss_pred -EEEEccCCCCCHHHHHHHHHHHHHH
Q 040481 155 -FMETSALDSTNVKSAFEIVIREIYS 179 (222)
Q Consensus 155 -~~~~sa~~~~~i~~~~~~i~~~~~~ 179 (222)
++++||++|.|+++++++|.+.+..
T Consensus 160 ~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 160 DAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred eEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 8999999999999999999886643
No 189
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.82 E-value=2e-19 Score=124.83 Aligned_cols=160 Identities=27% Similarity=0.361 Sum_probs=121.4
Q ss_pred CCCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCC
Q 040481 10 GGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGA 89 (222)
Q Consensus 10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 89 (222)
+++.++.+||+++|-.++|||||++.|.+... ....|+.| +..+.+.+++ .+++.+||++|+......|..+|.+.
T Consensus 11 ks~t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenv 86 (185)
T KOG0074|consen 11 KSRTRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENV 86 (185)
T ss_pred cCCCcceEEEEEEecCCCcchhHHHHHccCCh-hhccccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhcc
Confidence 35668899999999999999999999976553 23344444 5555565554 57899999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH-----cCCeEEEEccCCC
Q 040481 90 VGALIVYDITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLAEA-----EGLFFMETSALDS 163 (222)
Q Consensus 90 d~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~ 163 (222)
|++|||+|-+|...|+++.+.+.++.... -..+|++|..||.|+.-. ...++...-+.. .-+-+-+|||.++
T Consensus 87 d~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta--a~~eeia~klnl~~lrdRswhIq~csals~ 164 (185)
T KOG0074|consen 87 DGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA--AKVEEIALKLNLAGLRDRSWHIQECSALSL 164 (185)
T ss_pred ceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh--cchHHHHHhcchhhhhhceEEeeeCccccc
Confidence 99999999999999999977666654443 477999999999998632 222222211111 1244788999999
Q ss_pred CCHHHHHHHHHH
Q 040481 164 TNVKSAFEIVIR 175 (222)
Q Consensus 164 ~~i~~~~~~i~~ 175 (222)
+|+.+..+|+..
T Consensus 165 eg~~dg~~wv~s 176 (185)
T KOG0074|consen 165 EGSTDGSDWVQS 176 (185)
T ss_pred cCccCcchhhhc
Confidence 999998887754
No 190
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.82 E-value=6.6e-19 Score=149.58 Aligned_cols=150 Identities=19% Similarity=0.189 Sum_probs=106.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCC-CCCCccceeEEEEEEEECCeEEEEEEEeCCCc--------chhhhhHHHhhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNP-HSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ--------ERFRAVTSAYYRG 88 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~~~~~ 88 (222)
+|+++|.+|||||||+|+|++..... ...+..+.+.....+..++. .+.+|||||. ..+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 58999999999999999999876432 22344455555555555554 5789999995 3344556677899
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCC-eEEEEccCCCCCHH
Q 040481 89 AVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGL-FFMETSALDSTNVK 167 (222)
Q Consensus 89 ~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~ 167 (222)
+|++++|+|+.++.+... ..+...++. .+.|+++|+||+|+...... ..+ ...++. +++++||.+|.|+.
T Consensus 79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 79 ADVILFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred CCEEEEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChH
Confidence 999999999988654332 122233332 35799999999998653321 122 234555 69999999999999
Q ss_pred HHHHHHHHHHH
Q 040481 168 SAFEIVIREIY 178 (222)
Q Consensus 168 ~~~~~i~~~~~ 178 (222)
++++.+.+.+.
T Consensus 150 ~ll~~i~~~l~ 160 (429)
T TIGR03594 150 DLLDAILELLP 160 (429)
T ss_pred HHHHHHHHhcC
Confidence 99998887653
No 191
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.81 E-value=1.5e-18 Score=155.11 Aligned_cols=165 Identities=19% Similarity=0.181 Sum_probs=112.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCccceeEEEEEEEECCeEEEEEEEeCCCcc----------hhhhh-H
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFN-PHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE----------RFRAV-T 82 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~-~ 82 (222)
..++|+++|.++||||||+++|++.... ....+.++.+.....+.+++.. +.+|||||.. .+... .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence 4589999999999999999999988752 2233444555544555566654 5599999953 12221 2
Q ss_pred HHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHH-HHHHH----cCCeEEE
Q 040481 83 SAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGK-SLAEA----EGLFFME 157 (222)
Q Consensus 83 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~-~~~~~----~~~~~~~ 157 (222)
...++.+|++|+|+|++++.++..+. ++..+.. .+.|+++|+||+|+.+... .+... .+... ..+++++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~ 600 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN 600 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence 34578999999999999998876654 3333332 4579999999999964221 11121 12221 2456799
Q ss_pred EccCCCCCHHHHHHHHHHHHHHHhhhhccCC
Q 040481 158 TSALDSTNVKSAFEIVIREIYSNVSRKVLNS 188 (222)
Q Consensus 158 ~sa~~~~~i~~~~~~i~~~~~~~~~~~~~~s 188 (222)
+||++|.|++++|+.+.+.+ ....++.+++
T Consensus 601 iSAktg~gv~~L~~~i~~~~-~~~~~~i~T~ 630 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEAL-ESWDQRIPTG 630 (712)
T ss_pred EECCCCCCHHHHHHHHHHHH-HHhcccCChH
Confidence 99999999999999877754 4555555554
No 192
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.81 E-value=5.1e-18 Score=123.40 Aligned_cols=159 Identities=24% Similarity=0.382 Sum_probs=121.8
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCC--------CCCCC--ccceeEEEEEEEECCeEEEEEEEeCCCcchhhhh
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFN--------PHSKA--TIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAV 81 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~--------~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 81 (222)
.+....||++.|+.++||||+++++...... ..... .+++-.++....+++ +..++++++|||+++..+
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~-~~~v~LfgtPGq~RF~fm 84 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-DTGVHLFGTPGQERFKFM 84 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC-cceEEEecCCCcHHHHHH
Confidence 4566789999999999999999999876531 11111 133444444554444 245779999999999999
Q ss_pred HHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHc--CCeEEEEc
Q 040481 82 TSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAE--GLFFMETS 159 (222)
Q Consensus 82 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~s 159 (222)
|..+.+.+++.|+++|.+.+..+ ...+.+..+..... +|++|.+||.||.+ ..+.+.+++..... .++.++.+
T Consensus 85 ~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~--ip~vVa~NK~DL~~--a~ppe~i~e~l~~~~~~~~vi~~~ 159 (187)
T COG2229 85 WEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP--IPVVVAINKQDLFD--ALPPEKIREALKLELLSVPVIEID 159 (187)
T ss_pred HHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC--CCEEEEeeccccCC--CCCHHHHHHHHHhccCCCceeeee
Confidence 99999999999999999999988 44555555544332 89999999999984 46667777666665 78999999
Q ss_pred cCCCCCHHHHHHHHHHH
Q 040481 160 ALDSTNVKSAFEIVIRE 176 (222)
Q Consensus 160 a~~~~~i~~~~~~i~~~ 176 (222)
|.++++..+.+..+..+
T Consensus 160 a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 160 ATEGEGARDQLDVLLLK 176 (187)
T ss_pred cccchhHHHHHHHHHhh
Confidence 99999999988876654
No 193
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.80 E-value=1.9e-18 Score=154.33 Aligned_cols=153 Identities=13% Similarity=0.127 Sum_probs=111.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhh----------hHHHh
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRA----------VTSAY 85 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~ 85 (222)
.++|+++|+++||||||+|+|++........+..+ ++.....+...+..+.+||+||...+.. ....+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvT--ve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVT--VERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCce--EeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 46899999999999999999998765444444444 4444444445566788999999765532 12223
Q ss_pred h--cCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCC
Q 040481 86 Y--RGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDS 163 (222)
Q Consensus 86 ~--~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (222)
+ ..+|++++|+|+++.+.. ..+...+.+ .++|+++++||+|+.+.+.+ ....+.+.+.++++++++||.++
T Consensus 81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g 153 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN---LYLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRG 153 (772)
T ss_pred HhccCCCEEEEEecCCcchhh---HHHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecC
Confidence 2 478999999999886542 223333333 45899999999998754444 34567788889999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 040481 164 TNVKSAFEIVIREI 177 (222)
Q Consensus 164 ~~i~~~~~~i~~~~ 177 (222)
+|++++.+.+.+..
T Consensus 154 ~GIdeL~~~I~~~~ 167 (772)
T PRK09554 154 RGIEALKLAIDRHQ 167 (772)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999988776643
No 194
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.80 E-value=1.7e-18 Score=150.41 Aligned_cols=157 Identities=17% Similarity=0.157 Sum_probs=103.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCC----ccceeEEEEEE------------EECCeEEEEEEEeCCCcchhh
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKA----TIGVEFQTQSM------------EIDGKEVKAQIWDTAGQERFR 79 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~----~~~~~~~~~~~------------~~~~~~~~~~i~D~~G~~~~~ 79 (222)
.+-|+++|++++|||||+++|.+..+...... +.+..+..... .++.....+.+|||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 45799999999999999999998766433222 22221111110 000011237899999999999
Q ss_pred hhHHHhhcCCCEEEEEEECCC---hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC------------CHHH-
Q 040481 80 AVTSAYYRGAVGALIVYDITR---RTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNV------------STEE- 143 (222)
Q Consensus 80 ~~~~~~~~~~d~vi~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~------------~~~~- 143 (222)
.++..+++.+|++++|||+++ +++++.+. .+.. .++|+++++||+|+.+.... ..+.
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v 156 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV 156 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence 999999999999999999987 44544332 2222 35799999999999642110 0000
Q ss_pred -----------HHHHHH------------H--cCCeEEEEccCCCCCHHHHHHHHHHHHHH
Q 040481 144 -----------GKSLAE------------A--EGLFFMETSALDSTNVKSAFEIVIREIYS 179 (222)
Q Consensus 144 -----------~~~~~~------------~--~~~~~~~~sa~~~~~i~~~~~~i~~~~~~ 179 (222)
..++.. . ..++++++||++|+|+++++.++......
T Consensus 157 ~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~ 217 (590)
T TIGR00491 157 QQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQ 217 (590)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHH
Confidence 011111 1 13679999999999999999988765443
No 195
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.80 E-value=1.1e-18 Score=143.64 Aligned_cols=170 Identities=26% Similarity=0.218 Sum_probs=118.5
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCC-CCCccceeEEEEEEEECCeEEEEEEEeCCCcc----------hhhh-hH
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPH-SKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE----------RFRA-VT 82 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~-~~ 82 (222)
..++|+|+|.|++|||||+|+|++....-. ..+.++.+.-...+..++.. +.++||+|.. .|.. -.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE--EEEEECCCCCcccccccceEEEeehhh
Confidence 569999999999999999999999875332 23444444444455555554 5699999932 2221 23
Q ss_pred HHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHH-----HHHcCCeEEE
Q 040481 83 SAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSL-----AEAEGLFFME 157 (222)
Q Consensus 83 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~ 157 (222)
...+..+|.+++|+|+..+.+ .+..+.+.-..+.+.+++||+||+|+.+.+....++.+.. ..-..++.+.
T Consensus 255 ~~aI~~a~vvllviDa~~~~~----~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~ 330 (444)
T COG1160 255 LKAIERADVVLLVIDATEGIS----EQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF 330 (444)
T ss_pred HhHHhhcCEEEEEEECCCCch----HHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence 456788999999999999966 3333333333345679999999999976543443333222 2223678999
Q ss_pred EccCCCCCHHHHHHHHHHHHHHHhhhhccCCcch
Q 040481 158 TSALDSTNVKSAFEIVIREIYSNVSRKVLNSDSY 191 (222)
Q Consensus 158 ~sa~~~~~i~~~~~~i~~~~~~~~~~~~~~s~~~ 191 (222)
+||.++.++..+|+.+ ..+++...++.+++..-
T Consensus 331 iSA~~~~~i~~l~~~i-~~~~~~~~~ri~Ts~LN 363 (444)
T COG1160 331 ISALTGQGLDKLFEAI-KEIYECATRRISTSLLN 363 (444)
T ss_pred EEecCCCChHHHHHHH-HHHHHHhccccCHHHHH
Confidence 9999999999999954 55888888877766543
No 196
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.80 E-value=2.4e-18 Score=131.80 Aligned_cols=117 Identities=18% Similarity=0.343 Sum_probs=87.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCC-CEEEEEE
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGA-VGALIVY 96 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~-d~vi~v~ 96 (222)
+|+++|+++||||+|+++|....+...+.++ ............+....+.+||+||+..+...+..+++.+ +++|||+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999988765544332 2222221121123456788999999999988888899998 9999999
Q ss_pred ECCCh-hhHHHHHHHHHHHHhc---CCCCCcEEEEEeCCCCCc
Q 040481 97 DITRR-TTFDSISRWLDELKTH---SDTTVARMLVGNKCDLES 135 (222)
Q Consensus 97 d~~~~-~s~~~~~~~~~~i~~~---~~~~~p~iiv~nK~Dl~~ 135 (222)
|+.+. .++..+..|+..+... ...++|++|++||+|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 99998 6777776665444322 235789999999999853
No 197
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.80 E-value=2.5e-18 Score=153.74 Aligned_cols=156 Identities=18% Similarity=0.140 Sum_probs=105.3
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCC-CCCCccceeEEEEEEEECCeEEEEEEEeCCCcch--------hhhhHHH
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNP-HSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER--------FRAVTSA 84 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~ 84 (222)
....+|+|+|.++||||||+|+|++..... ...+..+.+.......+.+ ..+.+|||||... +......
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~ 350 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQI 350 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHH
Confidence 344689999999999999999999875422 2234444444443444444 4578999999653 2344456
Q ss_pred hhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCC
Q 040481 85 YYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDST 164 (222)
Q Consensus 85 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (222)
++..+|++|+|+|+.++..... ..|...+.. .+.|+++|+||+|+.... ......+....+ ..+++||++|.
T Consensus 351 ~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~---~~~~~~~~lg~~-~~~~iSA~~g~ 422 (712)
T PRK09518 351 AVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE---YDAAEFWKLGLG-EPYPISAMHGR 422 (712)
T ss_pred HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch---hhHHHHHHcCCC-CeEEEECCCCC
Confidence 7899999999999987532111 245555543 467999999999986421 111222222223 35789999999
Q ss_pred CHHHHHHHHHHHHHH
Q 040481 165 NVKSAFEIVIREIYS 179 (222)
Q Consensus 165 ~i~~~~~~i~~~~~~ 179 (222)
||+++|+++++.+..
T Consensus 423 GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 423 GVGDLLDEALDSLKV 437 (712)
T ss_pred CchHHHHHHHHhccc
Confidence 999999999887643
No 198
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.80 E-value=1.5e-18 Score=142.75 Aligned_cols=151 Identities=20% Similarity=0.114 Sum_probs=111.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCC-CCCccceeEEEEEEEECCeEEEEEEEeCCCcchh---------hhhHHHhh
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPH-SKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERF---------RAVTSAYY 86 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~ 86 (222)
+.|+|+|.|+||||||+|+|.+....-. ..|.++.+..+......+.. |.++||+|.+.. .......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 6799999999999999999999887543 44667777777777776655 779999995422 23345678
Q ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 040481 87 RGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNV 166 (222)
Q Consensus 87 ~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 166 (222)
..||++|||+|...+-+-.. ......++ ..+.|+++|+||+|-. ...+...+|...-.-.++++||..|.|+
T Consensus 82 ~eADvilfvVD~~~Git~~D-~~ia~~Lr---~~~kpviLvvNK~D~~----~~e~~~~efyslG~g~~~~ISA~Hg~Gi 153 (444)
T COG1160 82 EEADVILFVVDGREGITPAD-EEIAKILR---RSKKPVILVVNKIDNL----KAEELAYEFYSLGFGEPVPISAEHGRGI 153 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHH-HHHHHHHH---hcCCCEEEEEEcccCc----hhhhhHHHHHhcCCCCceEeehhhccCH
Confidence 99999999999988654111 22333333 3457999999999964 2223334444444456999999999999
Q ss_pred HHHHHHHHHHH
Q 040481 167 KSAFEIVIREI 177 (222)
Q Consensus 167 ~~~~~~i~~~~ 177 (222)
.++++.++..+
T Consensus 154 ~dLld~v~~~l 164 (444)
T COG1160 154 GDLLDAVLELL 164 (444)
T ss_pred HHHHHHHHhhc
Confidence 99999888876
No 199
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.79 E-value=1.1e-18 Score=147.80 Aligned_cols=157 Identities=20% Similarity=0.166 Sum_probs=102.9
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCC-----------------------------CCCccceeEEEEEEEECCe
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPH-----------------------------SKATIGVEFQTQSMEIDGK 63 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 63 (222)
..+.++|+++|++++|||||+++|+....... .....+++.......+...
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 45679999999999999999999984321100 0012344444444555556
Q ss_pred EEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC----
Q 040481 64 EVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDLESIRN---- 138 (222)
Q Consensus 64 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~---- 138 (222)
.+.+.+|||||++.+.......+..+|++|+|+|+++...+... ..++..+.... ..|+++++||+|+.+...
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG--INQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC--CCeEEEEEEccccccccHHHHH
Confidence 67889999999988866655667899999999999873112111 22222232221 136889999999974211
Q ss_pred CCHHHHHHHHHHcC-----CeEEEEccCCCCCHHHHHH
Q 040481 139 VSTEEGKSLAEAEG-----LFFMETSALDSTNVKSAFE 171 (222)
Q Consensus 139 ~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~~~ 171 (222)
...+++..+....+ ++++++||++|.|+.++..
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 11234444554444 5799999999999998553
No 200
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.79 E-value=1.8e-18 Score=146.48 Aligned_cols=156 Identities=17% Similarity=0.138 Sum_probs=104.6
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCc--CCC---------------------------CCCCccceeEEEEEEEECCe
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNE--FNP---------------------------HSKATIGVEFQTQSMEIDGK 63 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 63 (222)
....++|+++|+.++|||||+.+|+... ... ......+++.......+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 4567899999999999999999997521 110 00011234444444555556
Q ss_pred EEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHH--HHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC---
Q 040481 64 EVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSI--SRWLDELKTHSDTTVARMLVGNKCDLESIRN--- 138 (222)
Q Consensus 64 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~--- 138 (222)
.+.+.+||+||++.|.......+..+|++|+|+|+++++++... ..++..... . ...|++|++||+|+.+...
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~-~-~~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART-L-GINQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH-c-CCCeEEEEEEChhccCccHHHH
Confidence 67889999999998877666678899999999999988543111 111122222 1 1247888999999964222
Q ss_pred -CCHHHHHHHHHHcC-----CeEEEEccCCCCCHHHHH
Q 040481 139 -VSTEEGKSLAEAEG-----LFFMETSALDSTNVKSAF 170 (222)
Q Consensus 139 -~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~~ 170 (222)
...+++..++...+ ++++++||++|.|+.+++
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 11234455665554 679999999999998754
No 201
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.78 E-value=2.8e-17 Score=128.42 Aligned_cols=151 Identities=25% Similarity=0.220 Sum_probs=101.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhh-------hhHHHhhcCCC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFR-------AVTSAYYRGAV 90 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d 90 (222)
+|+++|++++|||||+++|.+........+.++.+.....+.+.+ ..+++||+||..... ......++.+|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999998764333333334444455555554 567899999964321 23345789999
Q ss_pred EEEEEEECCChh-hHHHHHHHHHHH-----------------------------------------Hhc-----------
Q 040481 91 GALIVYDITRRT-TFDSISRWLDEL-----------------------------------------KTH----------- 117 (222)
Q Consensus 91 ~vi~v~d~~~~~-s~~~~~~~~~~i-----------------------------------------~~~----------- 117 (222)
++++|+|++++. ....+...+... .++
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998765 333332222111 000
Q ss_pred -------------CCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 040481 118 -------------SDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177 (222)
Q Consensus 118 -------------~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~ 177 (222)
...-+|+++|+||+|+.. .++...++.. ..++++||+++.|++++|+.+.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 001268899999999853 3344444443 4589999999999999999887743
No 202
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.78 E-value=5e-21 Score=138.71 Aligned_cols=175 Identities=38% Similarity=0.659 Sum_probs=146.3
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCe-EEEEEEEeCCCcchhhhhHHHhhcCCCE
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGK-EVKAQIWDTAGQERFRAVTSAYYRGAVG 91 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 91 (222)
..+.++++|+|..|+|||++++++....+...|..+++.++.......+.. -+.+++||+.|++++..+..-+|+.+.+
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 356689999999999999999999999998999999998888877777654 4568899999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcC----CCCCcEEEEEeCCCCCcCCCCC-HHHHHHHHHHcCCe-EEEEccCCCCC
Q 040481 92 ALIVYDITRRTTFDSISRWLDELKTHS----DTTVARMLVGNKCDLESIRNVS-TEEGKSLAEAEGLF-FMETSALDSTN 165 (222)
Q Consensus 92 vi~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~-~~~~sa~~~~~ 165 (222)
.++|||++..-+|+.+.+|.+.+.... ...+|+++..||+|+....... .....++.++++.. .+++|++.+.+
T Consensus 102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkn 181 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKN 181 (229)
T ss_pred eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccC
Confidence 999999999999999999999886553 2457778889999986533322 35667788888754 99999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhccC
Q 040481 166 VKSAFEIVIREIYSNVSRKVLN 187 (222)
Q Consensus 166 i~~~~~~i~~~~~~~~~~~~~~ 187 (222)
++|+-..++++++-.-.+.+.+
T Consensus 182 i~Ea~r~lVe~~lvnd~q~~~s 203 (229)
T KOG4423|consen 182 IPEAQRELVEKILVNDEQPIKS 203 (229)
T ss_pred hhHHHHHHHHHHHhhccCCccc
Confidence 9999999999887665554433
No 203
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.78 E-value=4e-18 Score=143.37 Aligned_cols=162 Identities=20% Similarity=0.163 Sum_probs=104.3
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCC---CCCCCccceeEEEEE------------------EEECC------eEEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFN---PHSKATIGVEFQTQS------------------MEIDG------KEVK 66 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~------------------~~~~~------~~~~ 66 (222)
...++|+++|+.++|||||+++|.+.... ++.....+....... ..+++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 45789999999999999999999764221 111111111111000 00011 1457
Q ss_pred EEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC--CHHHH
Q 040481 67 AQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNV--STEEG 144 (222)
Q Consensus 67 ~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~ 144 (222)
+.+||+||++.|...+......+|++|+|+|++++.......+.+..+.... ..|+++++||+|+.+.... ..+++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC--CCeEEEEEEccccCCHHHHHHHHHHH
Confidence 8899999999998888888889999999999997531112222233332221 2368899999999753221 12333
Q ss_pred HHHHHHc---CCeEEEEccCCCCCHHHHHHHHHHHH
Q 040481 145 KSLAEAE---GLFFMETSALDSTNVKSAFEIVIREI 177 (222)
Q Consensus 145 ~~~~~~~---~~~~~~~sa~~~~~i~~~~~~i~~~~ 177 (222)
.++.... +++++++||++|.|++++++.|...+
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 3333332 67899999999999999999887654
No 204
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.78 E-value=9.9e-18 Score=138.30 Aligned_cols=155 Identities=22% Similarity=0.189 Sum_probs=111.1
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCC-CCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhh--------HHH
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPH-SKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAV--------TSA 84 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~ 84 (222)
..-++|+++|.|+||||||+|+|++....-. ..+.++.++-...+.++| +.++++||+|..+.... ...
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~ 292 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKK 292 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHH
Confidence 3448999999999999999999999876543 446666677777777776 66779999996554322 334
Q ss_pred hhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCC
Q 040481 85 YYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDST 164 (222)
Q Consensus 85 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (222)
.+..||.+++|+|++.+.+- .....+. ....+.|+++|.||.|+........ +....+.+++.+|+++++
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~----~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~-----~~~~~~~~~i~iSa~t~~ 362 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDK----EDLALIE-LLPKKKPIIVVLNKADLVSKIELES-----EKLANGDAIISISAKTGE 362 (454)
T ss_pred HHHhCCEEEEEEeCCCCCch----hhHHHHH-hcccCCCEEEEEechhcccccccch-----hhccCCCceEEEEecCcc
Confidence 67899999999999986331 1111111 3345679999999999986443221 122234468999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 040481 165 NVKSAFEIVIREIYSN 180 (222)
Q Consensus 165 ~i~~~~~~i~~~~~~~ 180 (222)
|++.+.+.|.+.+...
T Consensus 363 Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 363 GLDALREAIKQLFGKG 378 (454)
T ss_pred CHHHHHHHHHHHHhhc
Confidence 9999988777765544
No 205
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.78 E-value=9.9e-18 Score=127.38 Aligned_cols=148 Identities=16% Similarity=0.127 Sum_probs=99.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCC---C-----------CCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhh
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFN---P-----------HSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAV 81 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~---~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 81 (222)
.++|+++|+.++|||||+++|+..... . ......+++.......+......+.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 589999999999999999999764100 0 00112344455555556556667889999999888777
Q ss_pred HHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCcCCCCC---HHHHHHHHHHc-----C
Q 040481 82 TSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVA-RMLVGNKCDLESIRNVS---TEEGKSLAEAE-----G 152 (222)
Q Consensus 82 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~~~~~~~---~~~~~~~~~~~-----~ 152 (222)
....+..+|++++|+|+..+.. ......+..+.. .++| +++++||+|+....... .+++..+.... +
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~ 157 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPM-PQTREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN 157 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence 7788899999999999987633 122333333433 3356 67889999986322211 12334444333 4
Q ss_pred CeEEEEccCCCCCHH
Q 040481 153 LFFMETSALDSTNVK 167 (222)
Q Consensus 153 ~~~~~~sa~~~~~i~ 167 (222)
++++++||.+|.++.
T Consensus 158 v~iipiSa~~g~n~~ 172 (195)
T cd01884 158 TPIVRGSALKALEGD 172 (195)
T ss_pred CeEEEeeCccccCCC
Confidence 789999999999864
No 206
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.78 E-value=8.6e-18 Score=124.25 Aligned_cols=150 Identities=19% Similarity=0.232 Sum_probs=97.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcch----------hhhhHHHhhc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER----------FRAVTSAYYR 87 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~ 87 (222)
.|+++|++|+|||||++.+.+........++.+.+.....+..+. .+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 389999999999999999996555444444444444444444443 678999999432 3333333443
Q ss_pred ---CCCEEEEEEECCChhh--HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCC--HHHHHHHHH--HcCCeEEEE
Q 040481 88 ---GAVGALIVYDITRRTT--FDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVS--TEEGKSLAE--AEGLFFMET 158 (222)
Q Consensus 88 ---~~d~vi~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~--~~~~~~~~~ 158 (222)
.++++++++|..+..+ ...+..|+... +.|+++|+||+|+....... ......... ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 4578899999976632 22233444332 37999999999985322211 112222222 345679999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 040481 159 SALDSTNVKSAFEIVIRE 176 (222)
Q Consensus 159 sa~~~~~i~~~~~~i~~~ 176 (222)
|++++.++.+++++|.+.
T Consensus 152 Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 152 SSLKGQGIDELRALIEKW 169 (170)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999988764
No 207
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.78 E-value=7.8e-18 Score=147.41 Aligned_cols=155 Identities=17% Similarity=0.137 Sum_probs=104.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc---CCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEE
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE---FNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALI 94 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 94 (222)
-|+++|+.++|||||+++|++.. +..+....++.+.....+...+ ...+.+||+||++.|.......+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 47899999999999999998643 2333333444444333332222 2347899999999998777788899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCcCCCCC--HHHHHHHHHHcC---CeEEEEccCCCCCHHH
Q 040481 95 VYDITRRTTFDSISRWLDELKTHSDTTVA-RMLVGNKCDLESIRNVS--TEEGKSLAEAEG---LFFMETSALDSTNVKS 168 (222)
Q Consensus 95 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~---~~~~~~sa~~~~~i~~ 168 (222)
|+|++++.. ....+.+..+.. .++| ++||+||+|+.+...+. .+++.++....+ ++++++||++|.|+++
T Consensus 81 VVda~eg~~-~qT~ehl~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 81 VVACDDGVM-AQTREHLAILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EEECCCCCc-HHHHHHHHHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 999987422 111222233322 2245 47899999997532221 233444444433 6899999999999999
Q ss_pred HHHHHHHHH
Q 040481 169 AFEIVIREI 177 (222)
Q Consensus 169 ~~~~i~~~~ 177 (222)
+++.|.+..
T Consensus 157 L~~~L~~~~ 165 (614)
T PRK10512 157 LREHLLQLP 165 (614)
T ss_pred HHHHHHHhh
Confidence 999887643
No 208
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.78 E-value=3.7e-18 Score=131.34 Aligned_cols=149 Identities=21% Similarity=0.186 Sum_probs=94.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCC-----------------------------CCccceeEEEEEEEECCeEEEEE
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHS-----------------------------KATIGVEFQTQSMEIDGKEVKAQ 68 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 68 (222)
+|+++|++++|||||+++|+........ ....+++.......+......+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 5899999999999999999764321110 00022233333333434455778
Q ss_pred EEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC----CHHHH
Q 040481 69 IWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNV----STEEG 144 (222)
Q Consensus 69 i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~----~~~~~ 144 (222)
+|||||+..+.......+..+|++|+|+|++++..- ........+.... ..++++|+||+|+.+.... ...+.
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~-~~~~~~~~~~~~~--~~~iIvviNK~D~~~~~~~~~~~i~~~~ 157 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLE-QTRRHSYILSLLG--IRHVVVAVNKMDLVDYSEEVFEEIVADY 157 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccH-hHHHHHHHHHHcC--CCcEEEEEEchhcccCCHHHHHHHHHHH
Confidence 999999988876666778999999999999876421 1122222222221 1356778999998642211 11233
Q ss_pred HHHHHHcC---CeEEEEccCCCCCHHHH
Q 040481 145 KSLAEAEG---LFFMETSALDSTNVKSA 169 (222)
Q Consensus 145 ~~~~~~~~---~~~~~~sa~~~~~i~~~ 169 (222)
..+....+ .+++++||++|.|+.+.
T Consensus 158 ~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 158 LAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 44445555 45899999999999864
No 209
>PRK10218 GTP-binding protein; Provisional
Probab=99.77 E-value=2.6e-17 Score=143.46 Aligned_cols=159 Identities=18% Similarity=0.217 Sum_probs=112.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC--cCCCC------------CCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhh
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARN--EFNPH------------SKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAV 81 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 81 (222)
..+|+|+|+.++|||||+++|+.. .+... ...+.+.++......+....+.+++|||||+..|...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 458999999999999999999873 22211 1234456666666666666788999999999999999
Q ss_pred HHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC-CCHHHHHHHH-------HHcCC
Q 040481 82 TSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRN-VSTEEGKSLA-------EAEGL 153 (222)
Q Consensus 82 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~-------~~~~~ 153 (222)
+..+++.+|++|+|+|+.++..... ..++..+.. .++|.++++||+|+...+. ...+++..+. ....+
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~ 160 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF 160 (607)
T ss_pred HHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCC
Confidence 9999999999999999988643322 233333333 4578899999999864221 1112233222 12357
Q ss_pred eEEEEccCCCC----------CHHHHHHHHHHHHH
Q 040481 154 FFMETSALDST----------NVKSAFEIVIREIY 178 (222)
Q Consensus 154 ~~~~~sa~~~~----------~i~~~~~~i~~~~~ 178 (222)
+++.+||.+|. ++..+|+.|++.+-
T Consensus 161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred CEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 79999999998 57777776666554
No 210
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.77 E-value=3.5e-17 Score=142.65 Aligned_cols=157 Identities=20% Similarity=0.199 Sum_probs=101.5
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCC----ccceeEEEEEEE--ECCeE-----E-----EEEEEeCCCcch
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKA----TIGVEFQTQSME--IDGKE-----V-----KAQIWDTAGQER 77 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~-----~-----~~~i~D~~G~~~ 77 (222)
.+.+.|+++|++++|||||+++|.+......... +.+..+...... ..+.. . .+.+|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 3456899999999999999999987654322221 222211111100 00111 1 167999999999
Q ss_pred hhhhHHHhhcCCCEEEEEEECCC---hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC----C--------HH
Q 040481 78 FRAVTSAYYRGAVGALIVYDITR---RTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNV----S--------TE 142 (222)
Q Consensus 78 ~~~~~~~~~~~~d~vi~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~----~--------~~ 142 (222)
|..++...+..+|++|+|+|+++ +++++.+.. +.. .++|+++++||+|+...... . ..
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ 156 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence 99888888899999999999998 555544432 222 46799999999998521110 0 00
Q ss_pred H-----------H-HHHHH--------------HcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 040481 143 E-----------G-KSLAE--------------AEGLFFMETSALDSTNVKSAFEIVIREI 177 (222)
Q Consensus 143 ~-----------~-~~~~~--------------~~~~~~~~~sa~~~~~i~~~~~~i~~~~ 177 (222)
. . ..+.. ...++++++||.+|.|+++++..+...+
T Consensus 157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 0 0 01110 0136799999999999999998876544
No 211
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.77 E-value=1.8e-17 Score=117.91 Aligned_cols=135 Identities=23% Similarity=0.270 Sum_probs=97.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCC----cchhhhhHHHhhcCCCEEE
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG----QERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----~~~~~~~~~~~~~~~d~vi 93 (222)
||+++|+.|+|||||+++|.+... .+..|..+. +. =.++|||| +..+..........+|.|+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~-------~~-----~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIE-------YY-----DNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeE-------ec-----ccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 899999999999999999988664 233332211 11 13799999 4555556666678999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCe-EEEEccCCCCCHHHHHHH
Q 040481 94 IVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEI 172 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~~~~~ 172 (222)
+|.|++++.+. +-..+... -..|+|-|+||.|+.. .....+.++++....|+. +|++|+.+|+|++++.++
T Consensus 69 ll~dat~~~~~-----~pP~fa~~--f~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 69 LLQDATEPRSV-----FPPGFASM--FNKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred EEecCCCCCcc-----CCchhhcc--cCCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence 99999987541 11111111 2369999999999984 234556677788877765 899999999999999887
Q ss_pred HH
Q 040481 173 VI 174 (222)
Q Consensus 173 i~ 174 (222)
|-
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 63
No 212
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.77 E-value=1.3e-17 Score=145.43 Aligned_cols=157 Identities=20% Similarity=0.242 Sum_probs=110.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc--CCCCC------------CCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHH
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE--FNPHS------------KATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTS 83 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 83 (222)
+|+|+|+.++|||||+.+|+... +.... ....+.++......+....+.+.+|||||+..|...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 79999999999999999998632 21110 11223444444444444567889999999999998889
Q ss_pred HhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC-CHHHHHHHH-------HHcCCeE
Q 040481 84 AYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNV-STEEGKSLA-------EAEGLFF 155 (222)
Q Consensus 84 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~~~~-------~~~~~~~ 155 (222)
.+++.+|++++|+|+.++. +.....|+..+.. .++|+++++||+|+.+.+.. ..+++..+. ....+++
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pv 158 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPI 158 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcE
Confidence 9999999999999998753 3444556665554 45799999999998643211 112223332 2235789
Q ss_pred EEEccCCCC----------CHHHHHHHHHHHHH
Q 040481 156 METSALDST----------NVKSAFEIVIREIY 178 (222)
Q Consensus 156 ~~~sa~~~~----------~i~~~~~~i~~~~~ 178 (222)
+.+||++|. |+..+|+.+++.+.
T Consensus 159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred EechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 999999995 79999888887654
No 213
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.76 E-value=1.2e-17 Score=140.53 Aligned_cols=163 Identities=20% Similarity=0.180 Sum_probs=102.5
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCC---CCCCCccceeEEEEEEE------------E------C--C----eEE
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFN---PHSKATIGVEFQTQSME------------I------D--G----KEV 65 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~------------~------~--~----~~~ 65 (222)
..+.++|+++|+.++|||||+.+|.+.... .+.....+......... + + + ...
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 455699999999999999999999664221 11111122221111000 0 0 0 135
Q ss_pred EEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCC--HHH
Q 040481 66 KAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVS--TEE 143 (222)
Q Consensus 66 ~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~ 143 (222)
.+.+||+||++.+..........+|++++|+|+.++.........+..+.... ..|+++|+||+|+.+..... .++
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~--i~~iiVVlNK~Dl~~~~~~~~~~~~ 163 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIG--IKNIVIVQNKIDLVSKERALENYEQ 163 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC--CCcEEEEEEeeccccchhHHHHHHH
Confidence 78999999999887766666778899999999996531111111222222211 13688999999997533221 223
Q ss_pred HHHHHHH---cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 040481 144 GKSLAEA---EGLFFMETSALDSTNVKSAFEIVIREI 177 (222)
Q Consensus 144 ~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~i~~~~ 177 (222)
+..+... .+++++++||++|.|++++++.|...+
T Consensus 164 i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 164 IKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 3344432 257899999999999999999887654
No 214
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=1.9e-18 Score=120.27 Aligned_cols=159 Identities=23% Similarity=0.338 Sum_probs=116.3
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
....+|+++|-.|+||||++.++.-++... ..|+++.. +..+.+ +.+++++||..|+-.....|+.+|.+.|++|
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevvt-tkPtigfn--ve~v~y--KNLk~~vwdLggqtSirPyWRcYy~dt~avI 90 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVVT-TKPTIGFN--VETVPY--KNLKFQVWDLGGQTSIRPYWRCYYADTDAVI 90 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCcccc-cCCCCCcC--cccccc--ccccceeeEccCcccccHHHHHHhcccceEE
Confidence 377899999999999999998876554322 23444433 333333 6788999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHH-HHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHH-----HHHHHcCCeEEEEccCCCCCHH
Q 040481 94 IVYDITRRTTFDSISR-WLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGK-----SLAEAEGLFFMETSALDSTNVK 167 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~~~sa~~~~~i~ 167 (222)
||+|-+|+........ ++.++.+..-.+..+++++||.|.... ....++. +..+..-+.++++||.+|+|++
T Consensus 91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~--~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld 168 (182)
T KOG0072|consen 91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA--LTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLD 168 (182)
T ss_pred EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh--hhHHHHHHHhChHHHhhheeEEEeeccccccCCc
Confidence 9999999877666643 444554444455667788999998631 2222221 1122233669999999999999
Q ss_pred HHHHHHHHHHHH
Q 040481 168 SAFEIVIREIYS 179 (222)
Q Consensus 168 ~~~~~i~~~~~~ 179 (222)
..++|+.+.+.+
T Consensus 169 ~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 169 PAMDWLQRPLKS 180 (182)
T ss_pred HHHHHHHHHHhc
Confidence 999999987754
No 215
>PRK12736 elongation factor Tu; Reviewed
Probab=99.74 E-value=4.9e-17 Score=136.31 Aligned_cols=148 Identities=17% Similarity=0.132 Sum_probs=99.2
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCC--------------CCCCccceeEEEEEEEECCeEEEEEEEeCCCcchh
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNP--------------HSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERF 78 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 78 (222)
..+.++|+++|+.++|||||+++|++..... ......+++.......+......+.++|+||+..|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 5567999999999999999999998632100 01112344555555666555667889999999988
Q ss_pred hhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCcCCCCC---HHHHHHHHHHcC--
Q 040481 79 RAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVA-RMLVGNKCDLESIRNVS---TEEGKSLAEAEG-- 152 (222)
Q Consensus 79 ~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~~~~~~~---~~~~~~~~~~~~-- 152 (222)
.......+..+|++++|+|+.++..-. ..+.+..+.. .++| +++++||+|+.+..... .+++..+....+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 164 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence 777777778999999999998753211 1233333333 3467 56789999987432221 123444444443
Q ss_pred ---CeEEEEccCCCC
Q 040481 153 ---LFFMETSALDST 164 (222)
Q Consensus 153 ---~~~~~~sa~~~~ 164 (222)
++++++||.+|.
T Consensus 165 ~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 165 GDDIPVIRGSALKAL 179 (394)
T ss_pred cCCccEEEeeccccc
Confidence 679999999983
No 216
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.74 E-value=1.2e-17 Score=140.15 Aligned_cols=166 Identities=25% Similarity=0.293 Sum_probs=124.5
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEE
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 92 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 92 (222)
-...+||+++|+.|+||||||-+|....+.++-++-... ......+....+...++|++..+.-.......++.+|++
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~--i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi 83 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPR--ILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVI 83 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCc--cccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEE
Confidence 345689999999999999999999999887654332110 011122333455678999987666666777889999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHhcCC--CCCcEEEEEeCCCCCcCCCCCHHH-HHHHHHHcC-Ce-EEEEccCCCCCH
Q 040481 93 LIVYDITRRTTFDSI-SRWLDELKTHSD--TTVARMLVGNKCDLESIRNVSTEE-GKSLAEAEG-LF-FMETSALDSTNV 166 (222)
Q Consensus 93 i~v~d~~~~~s~~~~-~~~~~~i~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~-~~~~~~~~~-~~-~~~~sa~~~~~i 166 (222)
.+||+++++.+++.+ ..|+..+++... ..+|+|+||||+|..+......+. ...++..+. +. +++|||++-.++
T Consensus 84 ~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~ 163 (625)
T KOG1707|consen 84 CLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANV 163 (625)
T ss_pred EEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhh
Confidence 999999999999999 779999988764 569999999999997644443333 333444432 33 899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 040481 167 KSAFEIVIREIYSN 180 (222)
Q Consensus 167 ~~~~~~i~~~~~~~ 180 (222)
.++|...-..+++.
T Consensus 164 ~e~fYyaqKaVihP 177 (625)
T KOG1707|consen 164 SELFYYAQKAVIHP 177 (625)
T ss_pred Hhhhhhhhheeecc
Confidence 99999776665543
No 217
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.74 E-value=8.1e-17 Score=126.00 Aligned_cols=113 Identities=17% Similarity=0.183 Sum_probs=81.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCC-------------C---CCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhh
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPH-------------S---KATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAV 81 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~-------------~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 81 (222)
+|+++|+.++|||||+++|+....... + ....+..+......+......+.+|||||+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 589999999999999999976421100 0 011223344444444445677899999999999888
Q ss_pred HHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040481 82 TSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134 (222)
Q Consensus 82 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~ 134 (222)
+..+++.+|++++|+|+.++... ....++..+.. .++|+++++||+|+.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~ 129 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRA 129 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECcccc
Confidence 88899999999999999987543 33445555544 357999999999985
No 218
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.74 E-value=6e-17 Score=125.10 Aligned_cols=113 Identities=23% Similarity=0.316 Sum_probs=80.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCC-----------------CCccceeEEEEEEE--E---CCeEEEEEEEeCCCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHS-----------------KATIGVEFQTQSME--I---DGKEVKAQIWDTAGQ 75 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~--~---~~~~~~~~i~D~~G~ 75 (222)
+|+++|+.++|||||+++|+........ ....+.++....+. + ++..+.+.+||+||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999875432210 01112222222222 2 345688999999999
Q ss_pred chhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040481 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134 (222)
Q Consensus 76 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~ 134 (222)
..+......++..+|++|+|+|+.+..++.. ..++..+.. .++|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 9998888888999999999999988766533 344444332 347999999999975
No 219
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.73 E-value=2e-17 Score=128.24 Aligned_cols=149 Identities=17% Similarity=0.151 Sum_probs=93.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCC---------------------------C--CCCccceeEEEEEEEECCeEEEEE
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNP---------------------------H--SKATIGVEFQTQSMEIDGKEVKAQ 68 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~---------------------------~--~~~~~~~~~~~~~~~~~~~~~~~~ 68 (222)
+|+++|+.++|||||+.+|+...... . .....+++.......+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 48999999999999999996421100 0 001123334444444444567788
Q ss_pred EEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhh---H---HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcC--CCCC
Q 040481 69 IWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTT---F---DSISRWLDELKTHSDTTVARMLVGNKCDLESI--RNVS 140 (222)
Q Consensus 69 i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~--~~~~ 140 (222)
+||+||+..+...+...+..+|++|+|+|++++.. | ......+...... ...|+++++||+|+... ....
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~ 158 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLIVAVNKMDDVTVNWSEER 158 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEEEEEEccccccccccHHH
Confidence 99999998887777777888999999999988521 1 1112222222221 22578889999998731 1111
Q ss_pred H----HHHHHHHHHc-----CCeEEEEccCCCCCHHH
Q 040481 141 T----EEGKSLAEAE-----GLFFMETSALDSTNVKS 168 (222)
Q Consensus 141 ~----~~~~~~~~~~-----~~~~~~~sa~~~~~i~~ 168 (222)
. +++..+.... +++++++||++|.|+++
T Consensus 159 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 159 YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCc
Confidence 1 1222233333 36799999999999873
No 220
>PRK12735 elongation factor Tu; Reviewed
Probab=99.73 E-value=7.5e-17 Score=135.26 Aligned_cols=149 Identities=15% Similarity=0.148 Sum_probs=98.5
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcC-------C----C---CCCCccceeEEEEEEEECCeEEEEEEEeCCCcchh
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEF-------N----P---HSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERF 78 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~-------~----~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 78 (222)
..+.++|+++|++++|||||+++|++... . . ......+++.......+......+.|+||||+..|
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 45679999999999999999999986210 0 0 01112344455555555555667889999999888
Q ss_pred hhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEE-EEEeCCCCCcCCCC---CHHHHHHHHHHc---
Q 040481 79 RAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARM-LVGNKCDLESIRNV---STEEGKSLAEAE--- 151 (222)
Q Consensus 79 ~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-iv~nK~Dl~~~~~~---~~~~~~~~~~~~--- 151 (222)
.......+..+|++++|+|+.++.. ....+.+..+.. .++|.+ +++||+|+.+.... ...++..+....
T Consensus 89 ~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~ 164 (396)
T PRK12735 89 VKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 7777777889999999999987532 122233333332 446766 57999999642221 112344444443
Q ss_pred --CCeEEEEccCCCCC
Q 040481 152 --GLFFMETSALDSTN 165 (222)
Q Consensus 152 --~~~~~~~sa~~~~~ 165 (222)
+++++++||.+|.+
T Consensus 165 ~~~~~ii~~Sa~~g~n 180 (396)
T PRK12735 165 GDDTPIIRGSALKALE 180 (396)
T ss_pred cCceeEEecchhcccc
Confidence 36799999999853
No 221
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.73 E-value=7e-17 Score=138.59 Aligned_cols=154 Identities=17% Similarity=0.165 Sum_probs=119.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchh------hhhHHHhh--c
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERF------RAVTSAYY--R 87 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------~~~~~~~~--~ 87 (222)
..+|+++|+|+||||||+|+|++........|..+.+.......+.+.. ++++|.||.-.+ +...++++ .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 3579999999999999999999998888888888888888888887766 679999993221 23334444 4
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 040481 88 GAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVK 167 (222)
Q Consensus 88 ~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 167 (222)
.+|++|-|+|+++.+- -+....+..+.++|++++.|+.|......+. -+.+.+.+.+|+|+++++|++|.|++
T Consensus 81 ~~D~ivnVvDAtnLeR------nLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~-ID~~~L~~~LGvPVv~tvA~~g~G~~ 153 (653)
T COG0370 81 KPDLIVNVVDATNLER------NLYLTLQLLELGIPMILALNMIDEAKKRGIR-IDIEKLSKLLGVPVVPTVAKRGEGLE 153 (653)
T ss_pred CCCEEEEEcccchHHH------HHHHHHHHHHcCCCeEEEeccHhhHHhcCCc-ccHHHHHHHhCCCEEEEEeecCCCHH
Confidence 5699999999998753 2222233334667999999999987654443 34567899999999999999999999
Q ss_pred HHHHHHHHHHH
Q 040481 168 SAFEIVIREIY 178 (222)
Q Consensus 168 ~~~~~i~~~~~ 178 (222)
++.+.+.+...
T Consensus 154 ~l~~~i~~~~~ 164 (653)
T COG0370 154 ELKRAIIELAE 164 (653)
T ss_pred HHHHHHHHhcc
Confidence 99998876433
No 222
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=2e-16 Score=125.08 Aligned_cols=159 Identities=21% Similarity=0.193 Sum_probs=113.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCc-ch--------hhhhHHHh
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ-ER--------FRAVTSAY 85 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-~~--------~~~~~~~~ 85 (222)
..+.|+|.|.|+||||||++++++........|.++-.+.+.++... +..++++||||. ++ -.....+.
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~--~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERG--YLRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecC--CceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 34789999999999999999999988776667776777777776554 456789999992 11 11112222
Q ss_pred hcCCCEEEEEEECC--ChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCC
Q 040481 86 YRGAVGALIVYDIT--RRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDS 163 (222)
Q Consensus 86 ~~~~d~vi~v~d~~--~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (222)
-+-.++|+|+||.+ ++.+.+....++..+..... .|+++|.||.|+.+...+...+.. +...-+.....+++..+
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~ 321 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKLEEIEAS-VLEEGGEEPLKISATKG 321 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHHHHHHHH-HHhhccccccceeeeeh
Confidence 33457889999995 57888888899999888765 799999999998754444332222 33333444777888888
Q ss_pred CCHHHHHHHHHHHHH
Q 040481 164 TNVKSAFEIVIREIY 178 (222)
Q Consensus 164 ~~i~~~~~~i~~~~~ 178 (222)
.+++.+-..+...+.
T Consensus 322 ~~~d~~~~~v~~~a~ 336 (346)
T COG1084 322 CGLDKLREEVRKTAL 336 (346)
T ss_pred hhHHHHHHHHHHHhh
Confidence 888876665555433
No 223
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.72 E-value=1.1e-16 Score=134.21 Aligned_cols=156 Identities=16% Similarity=0.116 Sum_probs=102.4
Q ss_pred CCceeeEEEEEEcCCCCCHHHHHHHHhcCcC------C------C--CCCCccceeEEEEEEEECCeEEEEEEEeCCCcc
Q 040481 11 GGEEYLFKIVIIGDSAVGKSNLLSRYARNEF------N------P--HSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76 (222)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~------~------~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 76 (222)
....+.++|+++|+.++|||||+++|++... . . ......+++.....+.++.....+.+||+||++
T Consensus 7 ~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 7 ERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred cCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH
Confidence 3456779999999999999999999974310 0 0 001123444555566666666778899999999
Q ss_pred hhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEE-EEEeCCCCCcCCCCC---HHHHHHHHHHcC
Q 040481 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARM-LVGNKCDLESIRNVS---TEEGKSLAEAEG 152 (222)
Q Consensus 77 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-iv~nK~Dl~~~~~~~---~~~~~~~~~~~~ 152 (222)
.|..........+|++++|+|+.++..-.. .+.+..+.. .++|.+ +++||+|+.+..... .+++..+....+
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 887766667788999999999988532221 223333332 346765 579999987532211 224455555543
Q ss_pred -----CeEEEEccCCCC-CHHHHH
Q 040481 153 -----LFFMETSALDST-NVKSAF 170 (222)
Q Consensus 153 -----~~~~~~sa~~~~-~i~~~~ 170 (222)
++++++||.++. +..+++
T Consensus 163 ~~~~~~~ii~vSa~~g~~g~~~~~ 186 (394)
T TIGR00485 163 FPGDDTPIIRGSALKALEGDAEWE 186 (394)
T ss_pred CCccCccEEECccccccccCCchh
Confidence 789999999874 333333
No 224
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.72 E-value=1.8e-16 Score=124.51 Aligned_cols=154 Identities=18% Similarity=0.185 Sum_probs=113.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcch-------hhhhHHHhhcCCC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER-------FRAVTSAYYRGAV 90 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~d 90 (222)
.|.+||.|++|||||+++|.+........+.++..-....+.+++.. .+.+-|+||.-. ........+.+++
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 57899999999999999999887655555555666666666665533 378999999422 1222344578999
Q ss_pred EEEEEEECCCh---hhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCe-EEEEccCCCC
Q 040481 91 GALIVYDITRR---TTFDSISRWLDELKTHSD--TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLF-FMETSALDST 164 (222)
Q Consensus 91 ~vi~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~ 164 (222)
.++||+|++.+ ..|+.+..+..+++.+.+ ...|.+||+||+|+++ -......+++....-+ ++++||+.++
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~e---ae~~~l~~L~~~lq~~~V~pvsA~~~e 353 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPE---AEKNLLSSLAKRLQNPHVVPVSAKSGE 353 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchh---HHHHHHHHHHHHcCCCcEEEeeecccc
Confidence 99999999988 777777776666655543 5679999999999852 1122345667776555 9999999999
Q ss_pred CHHHHHHHHHH
Q 040481 165 NVKSAFEIVIR 175 (222)
Q Consensus 165 ~i~~~~~~i~~ 175 (222)
++.++++-|-+
T Consensus 354 gl~~ll~~lr~ 364 (366)
T KOG1489|consen 354 GLEELLNGLRE 364 (366)
T ss_pred chHHHHHHHhh
Confidence 99998875543
No 225
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.71 E-value=3.1e-16 Score=121.68 Aligned_cols=153 Identities=15% Similarity=0.184 Sum_probs=95.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCCc-----------------------cceeEEEEE-------------EEEC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKAT-----------------------IGVEFQTQS-------------MEID 61 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~~~-----------------------~~~~~~~~~-------------~~~~ 61 (222)
||+++|+.++|||||+++|..+.+....... .+.+..... ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 5899999999999999999875543321100 011100000 0111
Q ss_pred CeEEEEEEEeCCCcchhhhhHHHhhc--CCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC
Q 040481 62 GKEVKAQIWDTAGQERFRAVTSAYYR--GAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNV 139 (222)
Q Consensus 62 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~ 139 (222)
.....+.++|+||+..+.......+. .+|++++|+|+..+.. .....++..+.. .++|+++|+||+|+.+....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA---LNIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEECccccCHHHH
Confidence 12356789999999888665554454 6899999999987643 222334444433 44799999999998643222
Q ss_pred CH--HHHHHHHH--------------------------HcCCeEEEEccCCCCCHHHHHHHHH
Q 040481 140 ST--EEGKSLAE--------------------------AEGLFFMETSALDSTNVKSAFEIVI 174 (222)
Q Consensus 140 ~~--~~~~~~~~--------------------------~~~~~~~~~sa~~~~~i~~~~~~i~ 174 (222)
.. +++..+.. ...++++.+||.+|+|++++...|.
T Consensus 157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 11 11222211 1134799999999999999887553
No 226
>CHL00071 tufA elongation factor Tu
Probab=99.70 E-value=4.3e-16 Score=131.21 Aligned_cols=150 Identities=16% Similarity=0.102 Sum_probs=100.0
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCC--------------CCCCccceeEEEEEEEECCeEEEEEEEeCCCcchh
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNP--------------HSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERF 78 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 78 (222)
..+.++|+++|++++|||||+++|++..... ......+++.......+......+.++|+||+..+
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 5566999999999999999999998742110 01111344444444555555567789999999888
Q ss_pred hhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCcCCCCC---HHHHHHHHHHcC--
Q 040481 79 RAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVA-RMLVGNKCDLESIRNVS---TEEGKSLAEAEG-- 152 (222)
Q Consensus 79 ~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~~~~~~~---~~~~~~~~~~~~-- 152 (222)
.......+..+|++++|+|+..+.. ....+.+..+.. .++| +++++||+|+.+..... .+++..+....+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~ 164 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP 164 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 7777777889999999999987643 222233333332 3468 66789999997532211 123444444432
Q ss_pred ---CeEEEEccCCCCCH
Q 040481 153 ---LFFMETSALDSTNV 166 (222)
Q Consensus 153 ---~~~~~~sa~~~~~i 166 (222)
++++++||.+|.++
T Consensus 165 ~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 165 GDDIPIVSGSALLALEA 181 (409)
T ss_pred CCcceEEEcchhhcccc
Confidence 68999999998754
No 227
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.70 E-value=7.4e-16 Score=114.56 Aligned_cols=161 Identities=17% Similarity=0.179 Sum_probs=104.8
Q ss_pred CCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCc----------chhhh
Q 040481 11 GGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ----------ERFRA 80 (222)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~ 80 (222)
-|.+..+.|+++|.++||||||||+|++...-.-...++|.+.....+.+++. +.++|.||- +.+..
T Consensus 19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~ 95 (200)
T COG0218 19 YPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKK 95 (200)
T ss_pred CCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHH
Confidence 35556789999999999999999999997632222344455566666666553 669999992 33444
Q ss_pred hHHHhhcC---CCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCH--HHHH-HHHHHcCCe
Q 040481 81 VTSAYYRG---AVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVST--EEGK-SLAEAEGLF 154 (222)
Q Consensus 81 ~~~~~~~~---~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~--~~~~-~~~~~~~~~ 154 (222)
+...|+.. ..++++++|+..+-.-.. .+.+..+.. .++|++|++||+|.....+... ..+. .+.......
T Consensus 96 ~i~~YL~~R~~L~~vvlliD~r~~~~~~D-~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~ 171 (200)
T COG0218 96 LIEEYLEKRANLKGVVLLIDARHPPKDLD-REMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDD 171 (200)
T ss_pred HHHHHHhhchhheEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCcc
Confidence 55555533 468899999987744221 123333333 5689999999999875433322 1111 222222222
Q ss_pred --EEEEccCCCCCHHHHHHHHHHHHH
Q 040481 155 --FMETSALDSTNVKSAFEIVIREIY 178 (222)
Q Consensus 155 --~~~~sa~~~~~i~~~~~~i~~~~~ 178 (222)
++..|+.++.|++++...|.+.+.
T Consensus 172 ~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 172 QWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred ceEEEEecccccCHHHHHHHHHHHhh
Confidence 777899999999998887776554
No 228
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.69 E-value=1.5e-15 Score=118.82 Aligned_cols=161 Identities=19% Similarity=0.245 Sum_probs=108.2
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcch------h------h
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER------F------R 79 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------~------~ 79 (222)
...+.+.|+++|.|++|||||.|.+.+......+....++......+ +.....++.|+||||.-. + .
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi-~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGI-ITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEE-EecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence 45677999999999999999999999999887776665555444444 445567889999999321 1 1
Q ss_pred hhHHHhhcCCCEEEEEEECCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC-------------CC---HH
Q 040481 80 AVTSAYYRGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDLESIRN-------------VS---TE 142 (222)
Q Consensus 80 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~-------------~~---~~ 142 (222)
.........||.+++|+|+++... .+ ...+..+..+ ..+|.++|+||.|...... +. .+
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~--~l~p~vl~~l~~y--s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~ 222 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRT--PLHPRVLHMLEEY--SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE 222 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcC--ccChHHHHHHHHH--hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence 123345688999999999986321 11 2233444444 3478899999999743221 11 11
Q ss_pred HHHHHHHHc---------CC----eEEEEccCCCCCHHHHHHHHHHHH
Q 040481 143 EGKSLAEAE---------GL----FFMETSALDSTNVKSAFEIVIREI 177 (222)
Q Consensus 143 ~~~~~~~~~---------~~----~~~~~sa~~~~~i~~~~~~i~~~~ 177 (222)
....|...- ++ .+|.+||++|+||+++-++|+.++
T Consensus 223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence 111221111 22 289999999999999999888754
No 229
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.69 E-value=1.2e-15 Score=121.28 Aligned_cols=115 Identities=17% Similarity=0.215 Sum_probs=81.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCC-----------------C---CccceeEEEEEEEECCeEEEEEEEeCCCcc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHS-----------------K---ATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~-----------------~---~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 76 (222)
-+|+++|++++|||||+++|+........ . ...+.++......+....+.+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 37999999999999999999753211000 0 011333444455556667888999999999
Q ss_pred hhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040481 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLES 135 (222)
Q Consensus 77 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 135 (222)
.|.......++.+|++|+|+|++++.. .....++..... .++|+++++||+|+..
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~~---~~~P~iivvNK~D~~~ 137 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCRL---RGIPIITFINKLDREG 137 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence 888777778899999999999987643 222334443332 4579999999999864
No 230
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.69 E-value=4.2e-16 Score=120.51 Aligned_cols=113 Identities=23% Similarity=0.229 Sum_probs=78.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCC----------------CCCccceeEEEEEEEEC--------CeEEEEEEEeCC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPH----------------SKATIGVEFQTQSMEID--------GKEVKAQIWDTA 73 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~~ 73 (222)
+|+++|+.++|||||+.+|+....... .....++........+. +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 689999999999999999976432100 00111111122222333 347889999999
Q ss_pred CcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040481 74 GQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134 (222)
Q Consensus 74 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~ 134 (222)
|+..|.......++.+|++++|||+.++........+ .... ..++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l-~~~~---~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVL-RQAL---KERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHH-HHHH---HcCCCEEEEEECCCcc
Confidence 9999999999999999999999999988664432222 2222 2457999999999975
No 231
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=2.1e-15 Score=126.27 Aligned_cols=155 Identities=17% Similarity=0.189 Sum_probs=109.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECC-eEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDG-KEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
+.+-|++||+-..|||||+..+-...........++-.+.-..+..+. ..-.+.|+|||||+.|..+......-+|++|
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 456799999999999999999987766544333333333333333331 2234679999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-------Hc--CCeEEEEccCCCC
Q 040481 94 IVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAE-------AE--GLFFMETSALDST 164 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-------~~--~~~~~~~sa~~~~ 164 (222)
+|++++|+-- .+....+......+.|++|++||+|..+.. ++....-.. .+ ...++++||++|+
T Consensus 84 LVVa~dDGv~----pQTiEAI~hak~a~vP~iVAiNKiDk~~~n---p~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~ 156 (509)
T COG0532 84 LVVAADDGVM----PQTIEAINHAKAAGVPIVVAINKIDKPEAN---PDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE 156 (509)
T ss_pred EEEEccCCcc----hhHHHHHHHHHHCCCCEEEEEecccCCCCC---HHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence 9999999743 233334444445779999999999987422 222222222 22 2559999999999
Q ss_pred CHHHHHHHHHHH
Q 040481 165 NVKSAFEIVIRE 176 (222)
Q Consensus 165 ~i~~~~~~i~~~ 176 (222)
|+++++..++-.
T Consensus 157 Gi~eLL~~ill~ 168 (509)
T COG0532 157 GIDELLELILLL 168 (509)
T ss_pred CHHHHHHHHHHH
Confidence 999999866553
No 232
>COG2262 HflX GTPases [General function prediction only]
Probab=99.68 E-value=2.2e-15 Score=122.53 Aligned_cols=162 Identities=19% Similarity=0.150 Sum_probs=117.1
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCc---------chhhhhHH
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ---------ERFRAVTS 83 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~---------~~~~~~~~ 83 (222)
....+.|.++|-.++|||||+|+|++........-..+.+-....+.+.+ +..+.+-||.|- +.|.+..
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTL- 266 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTL- 266 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHH-
Confidence 45568999999999999999999997765544444445555556665654 455779999993 2233333
Q ss_pred HhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCC
Q 040481 84 AYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDS 163 (222)
Q Consensus 84 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (222)
.....+|+++.|+|++++.....+..-...+.......+|+|+|.||+|+...... ......... ..+.+||++|
T Consensus 267 EE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~----~~~~~~~~~-~~v~iSA~~~ 341 (411)
T COG2262 267 EEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEI----LAELERGSP-NPVFISAKTG 341 (411)
T ss_pred HHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhh----hhhhhhcCC-CeEEEEeccC
Confidence 33577999999999999987777777777777776677999999999997643331 111112222 5889999999
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 040481 164 TNVKSAFEIVIREIYSNV 181 (222)
Q Consensus 164 ~~i~~~~~~i~~~~~~~~ 181 (222)
+|++.+...|.+.+....
T Consensus 342 ~gl~~L~~~i~~~l~~~~ 359 (411)
T COG2262 342 EGLDLLRERIIELLSGLR 359 (411)
T ss_pred cCHHHHHHHHHHHhhhcc
Confidence 999999998888766443
No 233
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.67 E-value=2.9e-15 Score=114.34 Aligned_cols=159 Identities=15% Similarity=0.187 Sum_probs=95.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccce---eEEEEEEEECCeEEEEEEEeCCCcchhhhhH-----HHhhcC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGV---EFQTQSMEIDGKEVKAQIWDTAGQERFRAVT-----SAYYRG 88 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-----~~~~~~ 88 (222)
++|+++|++|+|||||+|+|++.........+.+. ......+... ....+.+||+||........ ...+..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 68999999999999999999986543322221111 1111111111 12357899999975432222 223677
Q ss_pred CCEEEEEEECCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC----C---CHH----HHHHHH----HHc-
Q 040481 89 AVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDLESIRN----V---STE----EGKSLA----EAE- 151 (222)
Q Consensus 89 ~d~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~----~---~~~----~~~~~~----~~~- 151 (222)
+|+++++.+. + |... ..|+..+... +.|+++|+||+|+..... . ..+ ..++.+ ...
T Consensus 81 ~d~~l~v~~~--~--~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISST--R--FSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeCC--C--CCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 8998887542 2 3333 4456666553 468999999999842111 0 111 111111 121
Q ss_pred --CCeEEEEccC--CCCCHHHHHHHHHHHHHHHhhh
Q 040481 152 --GLFFMETSAL--DSTNVKSAFEIVIREIYSNVSR 183 (222)
Q Consensus 152 --~~~~~~~sa~--~~~~i~~~~~~i~~~~~~~~~~ 183 (222)
..++|.+|+. .+.++.++.+.++..+-+++..
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~ 189 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH 189 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence 2358999998 5789999999999888776544
No 234
>PRK00049 elongation factor Tu; Reviewed
Probab=99.67 E-value=2.2e-15 Score=126.37 Aligned_cols=149 Identities=15% Similarity=0.151 Sum_probs=98.6
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCC---C-----------CCCCccceeEEEEEEEECCeEEEEEEEeCCCcch
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFN---P-----------HSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~---~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 77 (222)
...+.++|+++|+.++|||||+++|++.... . ......+++.......+......+.++||||+..
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence 3456799999999999999999999873110 0 0011234455555555655566788999999988
Q ss_pred hhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEE-EEEeCCCCCcCCCCC---HHHHHHHHHHc--
Q 040481 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARM-LVGNKCDLESIRNVS---TEEGKSLAEAE-- 151 (222)
Q Consensus 78 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-iv~nK~Dl~~~~~~~---~~~~~~~~~~~-- 151 (222)
|.......+..+|++++|+|+.++.. ....+.+..+.. .++|.+ +++||+|+.+..... ..++..+....
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~ 163 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCC
Confidence 87777777899999999999987633 222333344433 346876 579999997422211 12233333332
Q ss_pred ---CCeEEEEccCCCC
Q 040481 152 ---GLFFMETSALDST 164 (222)
Q Consensus 152 ---~~~~~~~sa~~~~ 164 (222)
+++++++||.++.
T Consensus 164 ~~~~~~iv~iSa~~g~ 179 (396)
T PRK00049 164 PGDDTPIIRGSALKAL 179 (396)
T ss_pred CccCCcEEEeeccccc
Confidence 4689999999875
No 235
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.67 E-value=5e-16 Score=120.14 Aligned_cols=162 Identities=18% Similarity=0.269 Sum_probs=101.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCC-CccceeEEEEEEEECCeEEEEEEEeCCCcchhh-----hhHHHhhcCCCE
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSK-ATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFR-----AVTSAYYRGAVG 91 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-----~~~~~~~~~~d~ 91 (222)
||+++|+.+|||||..+.+.++..+.+.. -..+.+.....+.+. ..+.+++||+||+..+. ......++.+.+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~-~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFL-SFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECT-TSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecC-CCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 79999999999999999998776543322 112334444444333 24578999999986543 346778899999
Q ss_pred EEEEEECCChhhHHHHHH---HHHHHHhcCCCCCcEEEEEeCCCCCcCC--CC----CHHHHHHHHHHcC---CeEEEEc
Q 040481 92 ALIVYDITRRTTFDSISR---WLDELKTHSDTTVARMLVGNKCDLESIR--NV----STEEGKSLAEAEG---LFFMETS 159 (222)
Q Consensus 92 vi~v~d~~~~~s~~~~~~---~~~~i~~~~~~~~p~iiv~nK~Dl~~~~--~~----~~~~~~~~~~~~~---~~~~~~s 159 (222)
+|||||+...+-.+.+.. .+..+.+.. +++.+.|+++|+|+..+. .. ..+.+.+.+...+ +.++.+|
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s-p~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYS-PNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHS-TT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhC-CCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 999999984443344443 334444444 567889999999985321 11 1122333444445 7799999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhh
Q 040481 160 ALDSTNVKSAFEIVIREIYSNVS 182 (222)
Q Consensus 160 a~~~~~i~~~~~~i~~~~~~~~~ 182 (222)
..+. .+-+.+..+++.+..+..
T Consensus 159 I~D~-Sly~A~S~Ivq~LiP~~~ 180 (232)
T PF04670_consen 159 IWDE-SLYEAWSKIVQKLIPNLS 180 (232)
T ss_dssp TTST-HHHHHHHHHHHTTSTTHC
T ss_pred CcCc-HHHHHHHHHHHHHcccHH
Confidence 9995 699999999998776544
No 236
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.66 E-value=3.5e-15 Score=119.27 Aligned_cols=143 Identities=16% Similarity=0.210 Sum_probs=92.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCC----------CCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhh---h
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPH----------SKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRA---V 81 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~ 81 (222)
..++|+++|++|+|||||+|+|++..+... ..++.+.......+..++..+.+.+|||||...... .
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999998876443 233334444445555677788999999999432110 0
Q ss_pred H----------------------H-Hhhc--CCCEEEEEEECCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040481 82 T----------------------S-AYYR--GAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDLES 135 (222)
Q Consensus 82 ~----------------------~-~~~~--~~d~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 135 (222)
| + ..+. .+|+++|+++.+... +... ...++.+.. .+|+++|+||+|+..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~~----~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLSK----RVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHhc----cCCEEEEEECCCcCC
Confidence 0 0 1122 467888888876521 1111 223333322 589999999999854
Q ss_pred C--CCCCHHHHHHHHHHcCCeEEEEccCC
Q 040481 136 I--RNVSTEEGKSLAEAEGLFFMETSALD 162 (222)
Q Consensus 136 ~--~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (222)
. .......+.+.+..+++++++.....
T Consensus 158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 158 PEELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred HHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 2 22334456677888899988876543
No 237
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.66 E-value=9.7e-16 Score=122.01 Aligned_cols=114 Identities=22% Similarity=0.203 Sum_probs=77.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCC----------------CCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhh
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPH----------------SKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAV 81 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 81 (222)
+|+++|++++|||||+++|+....... .....+++.......+.....++.+|||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999974211000 0011233333333333334567889999999888888
Q ss_pred HHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040481 82 TSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLES 135 (222)
Q Consensus 82 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 135 (222)
+...++.+|++|+|+|+.++..-. ....+..+.. .++|+++++||+|+..
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 888999999999999998764311 1233333333 4579999999999864
No 238
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.66 E-value=1.9e-15 Score=128.25 Aligned_cols=152 Identities=18% Similarity=0.178 Sum_probs=103.6
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCC-----------------------------CCCCccceeEEEEEEEECCe
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNP-----------------------------HSKATIGVEFQTQSMEIDGK 63 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 63 (222)
..+.++|+++|+.++|||||+.+|+...... ......+.++......+...
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 4567999999999999999999886421100 00111244455555556666
Q ss_pred EEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHH-------HHHHHHHHHHhcCCCCCc-EEEEEeCCCCCc
Q 040481 64 EVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFD-------SISRWLDELKTHSDTTVA-RMLVGNKCDLES 135 (222)
Q Consensus 64 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~-------~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~~ 135 (222)
.+.+.++|+||++.|.......+..+|++|+|+|+.++. |+ ...+.+..+.. .++| +++++||+|+.+
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~-~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG-FEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDATT 159 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCc-eecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCCc
Confidence 778899999999999988888899999999999998742 21 22222222222 3454 577899999862
Q ss_pred CC--C----CCHHHHHHHHHHcC-----CeEEEEccCCCCCHHH
Q 040481 136 IR--N----VSTEEGKSLAEAEG-----LFFMETSALDSTNVKS 168 (222)
Q Consensus 136 ~~--~----~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~ 168 (222)
.. . ...+++..+....+ ++++++||.+|+|+.+
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 11 1 11334555666554 6799999999999864
No 239
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.66 E-value=2.3e-15 Score=128.69 Aligned_cols=154 Identities=19% Similarity=0.157 Sum_probs=98.0
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCC------------C-------------------CccceeEEEEEEEEC
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHS------------K-------------------ATIGVEFQTQSMEID 61 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~------------~-------------------~~~~~~~~~~~~~~~ 61 (222)
....++|+++|+.++|||||+.+|+........ . ...++++......+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 456699999999999999999999754321100 0 011233344444445
Q ss_pred CeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCH
Q 040481 62 GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVST 141 (222)
Q Consensus 62 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~ 141 (222)
.....+.||||||+..|.......+..+|++++|+|+.++..-.....+ ..+.... ..|+++++||+|+.+......
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~lg--~~~iIvvvNKiD~~~~~~~~~ 180 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIATLLG--IKHLVVAVNKMDLVDYSEEVF 180 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHHHHhC--CCceEEEEEeeccccchhHHH
Confidence 5566788999999988866656667999999999999876321111111 1122111 136788999999974222111
Q ss_pred HH----HHHHHHHc----CCeEEEEccCCCCCHHHH
Q 040481 142 EE----GKSLAEAE----GLFFMETSALDSTNVKSA 169 (222)
Q Consensus 142 ~~----~~~~~~~~----~~~~~~~sa~~~~~i~~~ 169 (222)
++ ...+.... .++++++||++|.|+.++
T Consensus 181 ~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 181 ERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 21 22223332 477999999999999875
No 240
>PLN03127 Elongation factor Tu; Provisional
Probab=99.66 E-value=3.6e-15 Score=126.40 Aligned_cols=160 Identities=15% Similarity=0.120 Sum_probs=100.0
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcC------cCCC--------CCCCccceeEEEEEEEECCeEEEEEEEeCCCcch
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARN------EFNP--------HSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 77 (222)
...+.++|+++|+.++|||||+++|.+. .... ......+++.......+.....++.++||||+..
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence 3456789999999999999999999732 1000 0011134445555566666667788999999988
Q ss_pred hhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcE-EEEEeCCCCCcCCCCCH---HHHHHHHHHc--
Q 040481 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVAR-MLVGNKCDLESIRNVST---EEGKSLAEAE-- 151 (222)
Q Consensus 78 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-iiv~nK~Dl~~~~~~~~---~~~~~~~~~~-- 151 (222)
|..........+|++++|+|+.++..- ...+.+..+.. .++|. ++++||+|+.+...... .++.++....
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~~-qt~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 876666667789999999999876431 12223333332 34684 67899999974222111 1222333222
Q ss_pred ---CCeEEEEccC---CCCC-------HHHHHHHHHH
Q 040481 152 ---GLFFMETSAL---DSTN-------VKSAFEIVIR 175 (222)
Q Consensus 152 ---~~~~~~~sa~---~~~~-------i~~~~~~i~~ 175 (222)
.++++++|+. ++.| +..+++.+..
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~ 249 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDE 249 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHHH
Confidence 3678888876 4544 4555554443
No 241
>PLN03126 Elongation factor Tu; Provisional
Probab=99.66 E-value=2.2e-15 Score=128.38 Aligned_cols=151 Identities=16% Similarity=0.098 Sum_probs=100.2
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcC------CC--------CCCCccceeEEEEEEEECCeEEEEEEEeCCCcch
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEF------NP--------HSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 77 (222)
...+.++|+++|+.++|||||+++|+.... .. ......+++.......++.....+.++|+||+..
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 356679999999999999999999985211 00 0112234444444444544556778999999999
Q ss_pred hhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCcCCCC---CHHHHHHHHHHc--
Q 040481 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVA-RMLVGNKCDLESIRNV---STEEGKSLAEAE-- 151 (222)
Q Consensus 78 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~-- 151 (222)
|.......+..+|++++|+|+.++..-. ..+++..+.. .++| +++++||+|+.+.... ..+++..+....
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 9877778888999999999998764322 2333333433 3467 6778999999752221 112334444432
Q ss_pred ---CCeEEEEccCCCCCH
Q 040481 152 ---GLFFMETSALDSTNV 166 (222)
Q Consensus 152 ---~~~~~~~sa~~~~~i 166 (222)
+++++++|+.++.++
T Consensus 233 ~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 233 PGDDIPIISGSALLALEA 250 (478)
T ss_pred CcCcceEEEEEccccccc
Confidence 577999999988543
No 242
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.65 E-value=3.3e-15 Score=118.69 Aligned_cols=163 Identities=20% Similarity=0.128 Sum_probs=111.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcch-------hhhhHHHhhcCCC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER-------FRAVTSAYYRGAV 90 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~d 90 (222)
-|.+||.|++|||||++++++-.......|.++..-....+... ..-.|.+-|+||.-+ +.......+.++-
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 46789999999999999998876544444444444344444442 233477999999422 1222334578899
Q ss_pred EEEEEEECCChh---hHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEE-EEccCCCC
Q 040481 91 GALIVYDITRRT---TFDSISRWLDELKTHSD--TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFM-ETSALDST 164 (222)
Q Consensus 91 ~vi~v~d~~~~~---s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~sa~~~~ 164 (222)
+++.|+|++..+ ..+.......++..+.. ...|.+||+||+|+....+...+....+....++..+ .+||.++.
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~ 319 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTRE 319 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhccc
Confidence 999999998654 35555666667766654 5679999999999765444444444555555554422 29999999
Q ss_pred CHHHHHHHHHHHHHHHh
Q 040481 165 NVKSAFEIVIREIYSNV 181 (222)
Q Consensus 165 ~i~~~~~~i~~~~~~~~ 181 (222)
|+++++..+.+.+.+..
T Consensus 320 g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 320 GLDELLRALAELLEETK 336 (369)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999998888777665
No 243
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.65 E-value=3.2e-15 Score=126.84 Aligned_cols=153 Identities=16% Similarity=0.110 Sum_probs=100.6
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcC--CC---------------------------CCCCccceeEEEEEEEECCe
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEF--NP---------------------------HSKATIGVEFQTQSMEIDGK 63 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~ 63 (222)
..+.++|+++|+.++|||||+.+|+.... .. ......+.+.......+...
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 45678999999999999999999976211 00 00011244445555556666
Q ss_pred EEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhh---H---HHHHHHHHHHHhcCCCCCc-EEEEEeCCCCC--
Q 040481 64 EVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTT---F---DSISRWLDELKTHSDTTVA-RMLVGNKCDLE-- 134 (222)
Q Consensus 64 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~-- 134 (222)
...+.|+|+||+..|.......+..+|++++|+|+.++.. | ....+.+..+.. .++| +||++||+|..
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LGVKQMIVCINKMDDKTV 160 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cCCCeEEEEEEccccccc
Confidence 7788999999999998888888899999999999987631 1 122222223322 3455 56889999953
Q ss_pred cCCCCC----HHHHHHHHHHc-----CCeEEEEccCCCCCHHH
Q 040481 135 SIRNVS----TEEGKSLAEAE-----GLFFMETSALDSTNVKS 168 (222)
Q Consensus 135 ~~~~~~----~~~~~~~~~~~-----~~~~~~~sa~~~~~i~~ 168 (222)
+..+-. .+++..+.... +++++++|+.+|+|+.+
T Consensus 161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 211111 12233333322 36799999999999864
No 244
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.65 E-value=2.9e-15 Score=126.06 Aligned_cols=150 Identities=19% Similarity=0.156 Sum_probs=95.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCC-------------------------------CCccceeEEEEEEEECCeEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHS-------------------------------KATIGVEFQTQSMEIDGKEV 65 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 65 (222)
++|+++|+.++|||||+.+|+........ ....+++.......+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 48999999999999999999643211000 01112334444444444556
Q ss_pred EEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCH----
Q 040481 66 KAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVST---- 141 (222)
Q Consensus 66 ~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~---- 141 (222)
.+.++||||++.|.......+..+|++|+|+|+..+..-.....| ..+.... ..++++++||+|+.+......
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~~~~~~~--~~~iivviNK~D~~~~~~~~~~~i~ 157 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS-YIASLLG--IRHVVLAVNKMDLVDYDEEVFENIK 157 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-HHHHHcC--CCcEEEEEEecccccchHHHHHHHH
Confidence 788999999999876666778999999999999876432111222 2222221 135788999999874222111
Q ss_pred HHHHHHHHHc---CCeEEEEccCCCCCHHHH
Q 040481 142 EEGKSLAEAE---GLFFMETSALDSTNVKSA 169 (222)
Q Consensus 142 ~~~~~~~~~~---~~~~~~~sa~~~~~i~~~ 169 (222)
++...+.... +++++++||.+|+|+.+.
T Consensus 158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred HHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 1222233333 357999999999999863
No 245
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.65 E-value=2.6e-15 Score=119.94 Aligned_cols=145 Identities=21% Similarity=0.245 Sum_probs=90.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCC------------------CccceeEEEEEEEECCeEEEEEEEeCCCcchhh
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSK------------------ATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFR 79 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 79 (222)
+|+++|++|+|||||+++|+......... ...+.......+.+ ..+.+.+|||||+..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~--~~~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW--KGHKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE--CCEEEEEEECcCHHHHH
Confidence 58999999999999999997533211000 01111222223333 34668899999998887
Q ss_pred hhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEE--E
Q 040481 80 AVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFM--E 157 (222)
Q Consensus 80 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~ 157 (222)
..+...+..+|++++|+|++++........| ..+. ..++|+++++||+|+.... ..+....+...++.+++ .
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~---~~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~ 152 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFAD---EAGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQ 152 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHH---HcCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEE
Confidence 7788889999999999999987654333333 2232 2457999999999987431 12233334444554433 3
Q ss_pred EccCCCCCHHHHH
Q 040481 158 TSALDSTNVKSAF 170 (222)
Q Consensus 158 ~sa~~~~~i~~~~ 170 (222)
++..++.++..++
T Consensus 153 ip~~~~~~~~~~v 165 (268)
T cd04170 153 LPIGEGDDFKGVV 165 (268)
T ss_pred ecccCCCceeEEE
Confidence 4455555544433
No 246
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.64 E-value=3.4e-15 Score=126.47 Aligned_cols=164 Identities=16% Similarity=0.148 Sum_probs=104.1
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcC---CCCCCCccceeEEEEEE---------------EECC-----------
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEF---NPHSKATIGVEFQTQSM---------------EIDG----------- 62 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~---------------~~~~----------- 62 (222)
.....++|.++|+-..|||||+.+|++... .++....++.+.-.... ....
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 456789999999999999999999987543 22221111111111100 0000
Q ss_pred -----eEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCC
Q 040481 63 -----KEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIR 137 (222)
Q Consensus 63 -----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~ 137 (222)
....+.|+|+||++.|.......+..+|++++|+|+.++.......+.+..+.... -.++++++||+|+.+..
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLVKEA 187 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcC--CCcEEEEEecccccCHH
Confidence 02367899999999998777777889999999999987521111122223332222 13678899999997432
Q ss_pred CCC--HHHHHHHHHH---cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 040481 138 NVS--TEEGKSLAEA---EGLFFMETSALDSTNVKSAFEIVIREI 177 (222)
Q Consensus 138 ~~~--~~~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~i~~~~ 177 (222)
... .+++.++... .+++++++||++|.|++.+++.|.+.+
T Consensus 188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 211 1223333222 367899999999999999888777533
No 247
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.62 E-value=1.5e-14 Score=117.41 Aligned_cols=81 Identities=19% Similarity=0.240 Sum_probs=54.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEE---------------------CC-eEEEEEEEeCCCc-
Q 040481 19 IVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEI---------------------DG-KEVKAQIWDTAGQ- 75 (222)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~i~D~~G~- 75 (222)
|+++|.++||||||+++|++........|.++.+.......+ ++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999988754333333332222222111 22 3467999999996
Q ss_pred ---chhhhhHH---HhhcCCCEEEEEEECC
Q 040481 76 ---ERFRAVTS---AYYRGAVGALIVYDIT 99 (222)
Q Consensus 76 ---~~~~~~~~---~~~~~~d~vi~v~d~~ 99 (222)
+....+.. ..++.+|++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 33433333 3589999999999997
No 248
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.62 E-value=2.8e-14 Score=99.62 Aligned_cols=106 Identities=23% Similarity=0.204 Sum_probs=70.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchh---------hhhHHHhhc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFN-PHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERF---------RAVTSAYYR 87 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~ 87 (222)
+|+++|.+|+|||||+|+|++.... ....+..+.......+.+++..+ .++|+||.... .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 6999999999999999999986432 22223334344445555666554 59999995321 112334458
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeC
Q 040481 88 GAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNK 130 (222)
Q Consensus 88 ~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK 130 (222)
.+|++++|+|+.++.. +.....++.++ .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 9999999999887432 22334444442 55799999998
No 249
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=2.5e-14 Score=119.61 Aligned_cols=154 Identities=17% Similarity=0.156 Sum_probs=109.2
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 93 (222)
.+.+-|.|||+-..|||||+++|-+..........++-.+--..+.++ .+-.+.|.|||||..|..++.....-+|+++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 456789999999999999999998877654333333322222233333 2245779999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-------Hc--CCeEEEEccCCCC
Q 040481 94 IVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAE-------AE--GLFFMETSALDST 164 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-------~~--~~~~~~~sa~~~~ 164 (222)
+|+.++|+-- .+....+........|++|.+||+|.++ -..+.+.+-.. .+ ++.++++||++|+
T Consensus 230 LVVAadDGVm----pQT~EaIkhAk~A~VpiVvAinKiDkp~---a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~ 302 (683)
T KOG1145|consen 230 LVVAADDGVM----PQTLEAIKHAKSANVPIVVAINKIDKPG---ANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGE 302 (683)
T ss_pred EEEEccCCcc----HhHHHHHHHHHhcCCCEEEEEeccCCCC---CCHHHHHHHHHHcCccHHHcCCceeEEEeecccCC
Confidence 9999999743 3334444444557789999999999764 22232222222 22 2558999999999
Q ss_pred CHHHHHHHHHH
Q 040481 165 NVKSAFEIVIR 175 (222)
Q Consensus 165 ~i~~~~~~i~~ 175 (222)
|++.+-+.++-
T Consensus 303 nl~~L~eaill 313 (683)
T KOG1145|consen 303 NLDLLEEAILL 313 (683)
T ss_pred ChHHHHHHHHH
Confidence 99998876554
No 250
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.60 E-value=1.2e-14 Score=128.72 Aligned_cols=154 Identities=20% Similarity=0.174 Sum_probs=96.9
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCC------------C-------------------CccceeEEEEEEEE
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHS------------K-------------------ATIGVEFQTQSMEI 60 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~------------~-------------------~~~~~~~~~~~~~~ 60 (222)
.....++|+++|++++|||||+++|+........ . ...+++.......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 4455689999999999999999999864321110 0 00122233333344
Q ss_pred CCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCC
Q 040481 61 DGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVS 140 (222)
Q Consensus 61 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~ 140 (222)
......+.|+||||++.+.......+..+|++++|+|+.++..-.. .+.+..+.... ..+++|++||+|+.+.....
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~~~--~~~iivvvNK~D~~~~~~~~ 176 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASLLG--IRHVVLAVNKMDLVDYDQEV 176 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHHhC--CCeEEEEEEecccccchhHH
Confidence 4445667899999998886666667889999999999987642111 12222222221 14678899999996422211
Q ss_pred H----HHHHHHHHHcC---CeEEEEccCCCCCHHH
Q 040481 141 T----EEGKSLAEAEG---LFFMETSALDSTNVKS 168 (222)
Q Consensus 141 ~----~~~~~~~~~~~---~~~~~~sa~~~~~i~~ 168 (222)
. .+...+....+ ++++++||++|.|+.+
T Consensus 177 ~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 177 FDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 1 12223333433 4699999999999985
No 251
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=1.4e-14 Score=121.16 Aligned_cols=164 Identities=24% Similarity=0.235 Sum_probs=116.8
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcC--CC-------------CCCCccceeEEEEEEEE-CCeEEEEEEEeCCCc
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEF--NP-------------HSKATIGVEFQTQSMEI-DGKEVKAQIWDTAGQ 75 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~--~~-------------~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~ 75 (222)
|.++.-++.|+-+-..|||||.++|+.... .. ++...+++.-....+.+ ++..+.++++|||||
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH 135 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH 135 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence 445666899999999999999999976432 11 11222333333333333 356688999999999
Q ss_pred chhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCC-HHHHHHHHHHcCCe
Q 040481 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVS-TEEGKSLAEAEGLF 154 (222)
Q Consensus 76 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~ 154 (222)
..|.......+..||++|+|+|+..+-.-+.+..++..++. +..+|.|+||+|++..+.-. ..+..+.......+
T Consensus 136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~----~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~ 211 (650)
T KOG0462|consen 136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA----GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAE 211 (650)
T ss_pred ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc----CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccc
Confidence 99988888889999999999999998765555555555543 45779999999997533211 12233333444567
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHHH
Q 040481 155 FMETSALDSTNVKSAFEIVIREIYS 179 (222)
Q Consensus 155 ~~~~sa~~~~~i~~~~~~i~~~~~~ 179 (222)
++.+||++|.|+.++|+.+++.+..
T Consensus 212 ~i~vSAK~G~~v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 212 VIYVSAKTGLNVEELLEAIIRRVPP 236 (650)
T ss_pred eEEEEeccCccHHHHHHHHHhhCCC
Confidence 9999999999999999988887653
No 252
>PRK13351 elongation factor G; Reviewed
Probab=99.60 E-value=1.9e-14 Score=128.76 Aligned_cols=119 Identities=18% Similarity=0.219 Sum_probs=83.0
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCC--------CC-----CC---CccceeEEEEEEEECCeEEEEEEEeCCCcc
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFN--------PH-----SK---ATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~--------~~-----~~---~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 76 (222)
.+...+|+|+|+.++|||||+++|+..... .. +. ...+.++......+....+.+.+|||||+.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~ 84 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI 84 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence 345679999999999999999999753210 00 00 001122222222233345778999999999
Q ss_pred hhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040481 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLES 135 (222)
Q Consensus 77 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 135 (222)
.+...+..+++.+|++|+|+|++++........| ..+.. .++|+++++||+|+..
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence 9988889999999999999999988765554444 33332 4579999999999853
No 253
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.60 E-value=4.3e-14 Score=107.78 Aligned_cols=159 Identities=19% Similarity=0.169 Sum_probs=95.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCC--CCccceeEEEEEEEECCeEEEEEEEeCCCcchhh--------hh---HH
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHS--KATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFR--------AV---TS 83 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~---~~ 83 (222)
++|+++|.+|+|||||+|+|++....... .+..+...........+ ..+.++||||..... .+ ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 47999999999999999999988654322 22233333344444444 467899999954321 11 11
Q ss_pred HhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCcCCCC------CHHHHHHHHHHcCCeE
Q 040481 84 AYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSD--TTVARMLVGNKCDLESIRNV------STEEGKSLAEAEGLFF 155 (222)
Q Consensus 84 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~Dl~~~~~~------~~~~~~~~~~~~~~~~ 155 (222)
.....+|++|+|+++.. .+-+. ...++.+..... .-.++++|+|+.|......+ .....+.+.+..+-.|
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 23467899999999976 33111 222333333211 12477899999986532211 1134455555656555
Q ss_pred EEEc-----cCCCCCHHHHHHHHHHHHHH
Q 040481 156 METS-----ALDSTNVKSAFEIVIREIYS 179 (222)
Q Consensus 156 ~~~s-----a~~~~~i~~~~~~i~~~~~~ 179 (222)
+..+ +..+.++.++++.+-+.+.+
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 5544 34567788888877766655
No 254
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.59 E-value=7.4e-14 Score=110.33 Aligned_cols=157 Identities=22% Similarity=0.186 Sum_probs=108.2
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchh-------hhhHHH
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERF-------RAVTSA 84 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~ 84 (222)
.+....+|+++|+|++|||||+++|++-.......+.++.......+.+.+ .++++.|+||.-.- ......
T Consensus 59 ~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vls 136 (365)
T COG1163 59 KKSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLS 136 (365)
T ss_pred eccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeee
Confidence 355567999999999999999999999877665555556666666676665 55779999984221 123456
Q ss_pred hhcCCCEEEEEEECCChhh-HHHHHHHHHHHHhcCC--------------------------------------------
Q 040481 85 YYRGAVGALIVYDITRRTT-FDSISRWLDELKTHSD-------------------------------------------- 119 (222)
Q Consensus 85 ~~~~~d~vi~v~d~~~~~s-~~~~~~~~~~i~~~~~-------------------------------------------- 119 (222)
..++||++|+|+|+....+ .+.+.+.+...--...
T Consensus 137 v~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA 216 (365)
T COG1163 137 VARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNA 216 (365)
T ss_pred eeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccc
Confidence 7899999999999986544 4343322211100000
Q ss_pred ---------------------CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 040481 120 ---------------------TTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177 (222)
Q Consensus 120 ---------------------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~ 177 (222)
.=+|.++|.||.|+.. .++...+.+.. .++++||..+.|++++.+.|.+.+
T Consensus 217 ~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 217 DVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred eEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence 0267888999999864 23333344444 689999999999999988777654
No 255
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.57 E-value=6.5e-15 Score=109.38 Aligned_cols=114 Identities=22% Similarity=0.373 Sum_probs=70.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEE-CCeEEEEEEEeCCCcchhhhhHHH---hhcCCCEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEI-DGKEVKAQIWDTAGQERFRAVTSA---YYRGAVGA 92 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~---~~~~~d~v 92 (222)
..|+++|+.|+|||+|+.+|..+......... .... ...+ ....-.+.++|+|||++....... +...+-+|
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 57999999999999999999998543322222 1111 1111 223345779999999988765444 47889999
Q ss_pred EEEEECCC-hhhHHHHHHHH-HHHHhc--CCCCCcEEEEEeCCCCC
Q 040481 93 LIVYDITR-RTTFDSISRWL-DELKTH--SDTTVARMLVGNKCDLE 134 (222)
Q Consensus 93 i~v~d~~~-~~s~~~~~~~~-~~i~~~--~~~~~p~iiv~nK~Dl~ 134 (222)
|||+|.+. ...+..+.+++ ..+... ....+|++|+.||.|+.
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~ 125 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLF 125 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTST
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccc
Confidence 99999974 44455554433 333222 24778999999999985
No 256
>PRK12739 elongation factor G; Reviewed
Probab=99.56 E-value=1e-13 Score=123.92 Aligned_cols=117 Identities=21% Similarity=0.150 Sum_probs=81.2
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCC------------------CCCCCccceeEEEEEEEECCeEEEEEEEeCCC
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFN------------------PHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 74 (222)
.....+|+|+|+.++|||||+++|+..... .+....++.+.....+.+ .+.++.++||||
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~--~~~~i~liDTPG 82 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW--KGHRINIIDTPG 82 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE--CCEEEEEEcCCC
Confidence 345678999999999999999999752110 001222333333444444 346788999999
Q ss_pred cchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040481 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLES 135 (222)
Q Consensus 75 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 135 (222)
+..+...+...++.+|++|+|+|+.++..-.. ...+..+.. .++|+++++||+|+..
T Consensus 83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~---~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK---YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 98887788888999999999999988754222 222333332 4579999999999863
No 257
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.56 E-value=2.6e-14 Score=118.39 Aligned_cols=187 Identities=18% Similarity=0.186 Sum_probs=132.2
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcch----------hhh-hH
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER----------FRA-VT 82 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~-~~ 82 (222)
..+.+++++|-|+||||||++.++.........++++..+.+..+ +.....|+++||||.-. ..+ ..
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~--dykYlrwQViDTPGILD~plEdrN~IEmqsITA 243 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHL--DYKYLRWQVIDTPGILDRPEEDRNIIEMQIITA 243 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhh--hhheeeeeecCCccccCcchhhhhHHHHHHHHH
Confidence 344689999999999999999998887766655555555555554 44567889999999321 111 12
Q ss_pred HHhhcCCCEEEEEEECC--ChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHH---HHHHHHHcCCeEEE
Q 040481 83 SAYYRGAVGALIVYDIT--RRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEE---GKSLAEAEGLFFME 157 (222)
Q Consensus 83 ~~~~~~~d~vi~v~d~~--~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~ 157 (222)
.+.++ -+|+|+.|++ ++.|.....+++..|...-. ..|+|+|+||+|+-....+..+. .......-++++++
T Consensus 244 LAHLr--aaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~ 320 (620)
T KOG1490|consen 244 LAHLR--SAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQ 320 (620)
T ss_pred HHHhh--hhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEE
Confidence 23334 4567777775 67888888888887776653 35899999999986555555443 33444455699999
Q ss_pred EccCCCCCHHHHHHHHHHHHHHHhhhhccCCcchhhhhccccceeeccc
Q 040481 158 TSALDSTNVKSAFEIVIREIYSNVSRKVLNSDSYKAELSLNRVTLVKSE 206 (222)
Q Consensus 158 ~sa~~~~~i~~~~~~i~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 206 (222)
+|..+.+||-++-..+|+.++.++-.+..++++..- --.|+.....++
T Consensus 321 tS~~~eegVm~Vrt~ACe~LLa~RVE~Klks~~~~n-~vlnr~hvA~p~ 368 (620)
T KOG1490|consen 321 TSCVQEEGVMDVRTTACEALLAARVEQKLKSESRVN-NVLNRIHLAEPA 368 (620)
T ss_pred ecccchhceeeHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhhhhhcCCC
Confidence 999999999999999999999888776666665541 122566655554
No 258
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=3.1e-14 Score=117.86 Aligned_cols=165 Identities=22% Similarity=0.167 Sum_probs=104.3
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchh-h--------hhHHH
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERF-R--------AVTSA 84 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~--------~~~~~ 84 (222)
+..++|+|+|+|+||||||+|+|......-..+ ..|++.+.....++-.++++.+.||+|..+- . .....
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSp-v~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSP-VPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCC-CCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHH
Confidence 344899999999999999999999887654332 2234444444444445577889999996541 1 11234
Q ss_pred hhcCCCEEEEEEECCChhhH--HHHHHHHHHHHhcC------CCCCcEEEEEeCCCCCcC-CCCCHHHHHHHHHHc----
Q 040481 85 YYRGAVGALIVYDITRRTTF--DSISRWLDELKTHS------DTTVARMLVGNKCDLESI-RNVSTEEGKSLAEAE---- 151 (222)
Q Consensus 85 ~~~~~d~vi~v~d~~~~~s~--~~~~~~~~~i~~~~------~~~~p~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~---- 151 (222)
-+..+|++++|+|+...++- ..+...+....... ..+.|++++.||+|+... ......... +....
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~-~~~~~~~~~ 423 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVV-YPSAEGRSV 423 (531)
T ss_pred HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCcee-ccccccCcc
Confidence 56889999999999554332 22233333332221 244788999999999753 222221111 11112
Q ss_pred CCeEEEEccCCCCCHHHHHHHHHHHHHHH
Q 040481 152 GLFFMETSALDSTNVKSAFEIVIREIYSN 180 (222)
Q Consensus 152 ~~~~~~~sa~~~~~i~~~~~~i~~~~~~~ 180 (222)
.-...++|+++++|+.++...+...+...
T Consensus 424 ~~i~~~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 424 FPIVVEVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred cceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence 22356699999999999888777765544
No 259
>PRK09866 hypothetical protein; Provisional
Probab=99.56 E-value=3.6e-13 Score=115.89 Aligned_cols=108 Identities=14% Similarity=0.141 Sum_probs=73.4
Q ss_pred EEEEEeCCCcch-----hhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCC
Q 040481 66 KAQIWDTAGQER-----FRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVS 140 (222)
Q Consensus 66 ~~~i~D~~G~~~-----~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~ 140 (222)
++.|+||||... +.......+..+|+|+||+|+....+... ......+.... ...|+++|+||+|+.+.....
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~-K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG-QSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC-CCCCEEEEEEcccCCCcccch
Confidence 467899999643 23344557999999999999987644332 22334444332 235999999999986433333
Q ss_pred HHHHHHHHH----Hc---CCeEEEEccCCCCCHHHHHHHHHH
Q 040481 141 TEEGKSLAE----AE---GLFFMETSALDSTNVKSAFEIVIR 175 (222)
Q Consensus 141 ~~~~~~~~~----~~---~~~~~~~sa~~~~~i~~~~~~i~~ 175 (222)
.+.+..+.. .. ...++++||+.|.|++++++.|..
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 455555432 11 235999999999999999988776
No 260
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=6e-14 Score=114.25 Aligned_cols=156 Identities=21% Similarity=0.188 Sum_probs=105.7
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCC-----------------C------------CCCccceeEEEEEEEECCe
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNP-----------------H------------SKATIGVEFQTQSMEIDGK 63 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~-----------------~------------~~~~~~~~~~~~~~~~~~~ 63 (222)
..+.++++++|+..+|||||+=+|+.....- + .....|.+++.....+...
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 3566899999999999999998885532110 0 0111356677777777777
Q ss_pred EEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhh---H--HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC
Q 040481 64 EVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTT---F--DSISRWLDELKTHSDTTVARMLVGNKCDLESIRN 138 (222)
Q Consensus 64 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s---~--~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~ 138 (222)
.+.+.|+|+||+..|-........+||+.|+|+|+.+.+. | ....+....+..... --.+||++||+|+.+.++
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~wde 162 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEcccccccCH
Confidence 7889999999999988777778899999999999988741 1 111112222222222 124567799999987555
Q ss_pred CCHHHHH----HHHHHc-----CCeEEEEccCCCCCHHHH
Q 040481 139 VSTEEGK----SLAEAE-----GLFFMETSALDSTNVKSA 169 (222)
Q Consensus 139 ~~~~~~~----~~~~~~-----~~~~~~~sa~~~~~i~~~ 169 (222)
...+++. .+.+.. +++|+++|+..|.|+.+.
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 4444433 233222 366999999999998764
No 261
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.55 E-value=1.2e-13 Score=119.33 Aligned_cols=117 Identities=17% Similarity=0.182 Sum_probs=81.1
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCC--------------------CCCccceeEEEEEEEECCeEEEEEEEeCCC
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPH--------------------SKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 74 (222)
...+|+|+|++++|||||+.+|+....... .....+..+......+....+.+.+|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 345999999999999999999964211000 001113334444444444567789999999
Q ss_pred cchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040481 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLES 135 (222)
Q Consensus 75 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 135 (222)
+..|.......++.+|++|+|+|++++..- ....++..... .++|+++++||+|+..
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRDG 145 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCcccc
Confidence 998887777788999999999999876432 22334433332 5689999999999864
No 262
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=2.9e-14 Score=101.92 Aligned_cols=153 Identities=20% Similarity=0.252 Sum_probs=109.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVY 96 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 96 (222)
=|++++|-.++|||||++-|........ .||...+-+ ...+. ++.++.+|.+|+..-...|..++..+|++++.+
T Consensus 21 gKllFlGLDNAGKTTLLHMLKdDrl~qh-vPTlHPTSE--~l~Ig--~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lv 95 (193)
T KOG0077|consen 21 GKLLFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSE--ELSIG--GMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLV 95 (193)
T ss_pred ceEEEEeecCCchhhHHHHHcccccccc-CCCcCCChH--Hheec--CceEEEEccccHHHHHHHHHHHHhhhceeEeee
Confidence 4899999999999999999988775433 333211111 12222 356789999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH---H---c--------C---CeEEEE
Q 040481 97 DITRRTTFDSISRWLDELKTHS-DTTVARMLVGNKCDLESIRNVSTEEGKSLAE---A---E--------G---LFFMET 158 (222)
Q Consensus 97 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~---~---~--------~---~~~~~~ 158 (222)
|+.|.+-|.+....+..+.... -..+|++|.+||+|.+... ..++.+.... . . + +..+-|
T Consensus 96 da~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmc 173 (193)
T KOG0077|consen 96 DAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMC 173 (193)
T ss_pred ehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEE
Confidence 9999999988877666654443 2568999999999987532 3333321111 1 1 1 225778
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 040481 159 SALDSTNVKSAFEIVIRE 176 (222)
Q Consensus 159 sa~~~~~i~~~~~~i~~~ 176 (222)
|...+.+..+.|.|+.+.
T Consensus 174 si~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 174 SIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred EEEccCccceeeeehhhh
Confidence 888888888888776553
No 263
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.55 E-value=1.6e-13 Score=113.25 Aligned_cols=162 Identities=20% Similarity=0.233 Sum_probs=115.9
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCC---------------CCCCCccceeEEEEEEEE---CCeEEEEEEEeCCC
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFN---------------PHSKATIGVEFQTQSMEI---DGKEVKAQIWDTAG 74 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G 74 (222)
..+.-+..|+.+-..|||||..+|+..... .+....+++........+ ++..+.++++||||
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG 85 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG 85 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence 344457789999999999999999654321 112233333334444444 55789999999999
Q ss_pred cchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCe
Q 040481 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLF 154 (222)
Q Consensus 75 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 154 (222)
|-.|.-.....+..|.+.++|+|++.+-.-+.+...|..+... .-++-|+||.||+..+. ..-..+..+-.|++
T Consensus 86 HVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~----LeIiPViNKIDLP~Adp--ervk~eIe~~iGid 159 (603)
T COG0481 86 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENN----LEIIPVLNKIDLPAADP--ERVKQEIEDIIGID 159 (603)
T ss_pred ccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcC----cEEEEeeecccCCCCCH--HHHHHHHHHHhCCC
Confidence 9988766667788999999999999987666666666666443 46788899999975322 22334445555655
Q ss_pred ---EEEEccCCCCCHHHHHHHHHHHHHHH
Q 040481 155 ---FMETSALDSTNVKSAFEIVIREIYSN 180 (222)
Q Consensus 155 ---~~~~sa~~~~~i~~~~~~i~~~~~~~ 180 (222)
.+.+||++|.||+++++.|++++-..
T Consensus 160 ~~dav~~SAKtG~gI~~iLe~Iv~~iP~P 188 (603)
T COG0481 160 ASDAVLVSAKTGIGIEDVLEAIVEKIPPP 188 (603)
T ss_pred cchheeEecccCCCHHHHHHHHHhhCCCC
Confidence 78899999999999999998876533
No 264
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.55 E-value=1.3e-13 Score=108.87 Aligned_cols=160 Identities=17% Similarity=0.350 Sum_probs=119.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEEC--CeEEEEEEEeCCCcchhhhhHHHhhcCC----C
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEID--GKEVKAQIWDTAGQERFRAVTSAYYRGA----V 90 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~----d 90 (222)
-+|+++|+.++|||||+.+|-+.. ...+..+.+|-+..+.-+ +....+.+|-.-|+..+..+....+... -
T Consensus 53 k~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aet 129 (473)
T KOG3905|consen 53 KNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAET 129 (473)
T ss_pred CeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccce
Confidence 589999999999999999997755 344555666665555442 2334567888888877777776666554 3
Q ss_pred EEEEEEECCChhh-HHHHHHHHHHHHhcCCC-------------------------------------------------
Q 040481 91 GALIVYDITRRTT-FDSISRWLDELKTHSDT------------------------------------------------- 120 (222)
Q Consensus 91 ~vi~v~d~~~~~s-~~~~~~~~~~i~~~~~~------------------------------------------------- 120 (222)
.||++.|+++++. ++.+.+|..-+.++...
T Consensus 130 lviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~l 209 (473)
T KOG3905|consen 130 LVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVL 209 (473)
T ss_pred EEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccc
Confidence 6899999999965 67777787554433210
Q ss_pred ------------CCcEEEEEeCCCCC----cCCC-------CCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 040481 121 ------------TVARMLVGNKCDLE----SIRN-------VSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREI 177 (222)
Q Consensus 121 ------------~~p~iiv~nK~Dl~----~~~~-------~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~ 177 (222)
++|++||.+|+|.. .+.+ +....++.||..+|+.++.+|+++..||+-++.+|.++.
T Consensus 210 lPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 210 LPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRS 289 (473)
T ss_pred cccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHh
Confidence 79999999999972 2222 223456889999999999999999999999999999986
Q ss_pred HH
Q 040481 178 YS 179 (222)
Q Consensus 178 ~~ 179 (222)
+-
T Consensus 290 yG 291 (473)
T KOG3905|consen 290 YG 291 (473)
T ss_pred cC
Confidence 53
No 265
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.54 E-value=6.2e-14 Score=95.70 Aligned_cols=136 Identities=22% Similarity=0.227 Sum_probs=96.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCC----cchhhhhHHHhhcCCCEEE
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG----QERFRAVTSAYYRGAVGAL 93 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----~~~~~~~~~~~~~~~d~vi 93 (222)
|++++|..|+|||||.+.|.+... .+..| +-+.++++. .+|+|| +..+..........+|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKT-------QAve~~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKT-------QAVEFNDKG----DIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh--hhccc-------ceeeccCcc----ccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 799999999999999999987652 22222 223333222 789999 3444444556678899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCe-EEEEccCCCCCHHHHHHH
Q 040481 94 IVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLF-FMETSALDSTNVKSAFEI 172 (222)
Q Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~~~~~ 172 (222)
+|-+++++++ .+-..+... ...|+|-|++|.||.+.. ..+..++|..+-|.. +|++|+.++.|++++++.
T Consensus 70 ~v~~and~~s-----~f~p~f~~~--~~k~vIgvVTK~DLaed~--dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~ 140 (148)
T COG4917 70 YVHAANDPES-----RFPPGFLDI--GVKKVIGVVTKADLAEDA--DISLVKRWLREAGAEPIFETSAVDNQGVEELVDY 140 (148)
T ss_pred eeecccCccc-----cCCcccccc--cccceEEEEecccccchH--hHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence 9999999976 111222222 224689999999998633 345567788887765 899999999999999987
Q ss_pred HHH
Q 040481 173 VIR 175 (222)
Q Consensus 173 i~~ 175 (222)
+..
T Consensus 141 L~~ 143 (148)
T COG4917 141 LAS 143 (148)
T ss_pred HHh
Confidence 654
No 266
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.53 E-value=1.5e-13 Score=122.88 Aligned_cols=117 Identities=21% Similarity=0.156 Sum_probs=81.7
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCC-----CC-------------CCccceeEEEEEEEECCeEEEEEEEeCCC
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNP-----HS-------------KATIGVEFQTQSMEIDGKEVKAQIWDTAG 74 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 74 (222)
.+...+|+|+|++++|||||+++|+...... .. ...++.+.....+.+ .+..+.+|||||
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~--~~~~i~liDTPG 84 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW--KGHRINIIDTPG 84 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE--CCeEEEEEECCC
Confidence 3445699999999999999999997422110 00 112233333333433 456788999999
Q ss_pred cchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040481 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLES 135 (222)
Q Consensus 75 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 135 (222)
+..+...+...++.+|++|+|+|+.++........| ..+.. .++|+++++||+|+..
T Consensus 85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANR---YEVPRIAFVNKMDKTG 141 (689)
T ss_pred CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHH---cCCCEEEEEECCCCCC
Confidence 988877888889999999999999987554433223 33332 4579999999999874
No 267
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.53 E-value=3.8e-13 Score=112.34 Aligned_cols=83 Identities=18% Similarity=0.230 Sum_probs=56.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEE---------------------C-CeEEEEEEEeCCC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEI---------------------D-GKEVKAQIWDTAG 74 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~i~D~~G 74 (222)
++|+|+|.|+||||||+++|++........+..+.+.....+.+ + .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999988764433343333333322221 1 1236789999999
Q ss_pred c----chhhhhHH---HhhcCCCEEEEEEECC
Q 040481 75 Q----ERFRAVTS---AYYRGAVGALIVYDIT 99 (222)
Q Consensus 75 ~----~~~~~~~~---~~~~~~d~vi~v~d~~ 99 (222)
. .....+-. ..++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 22223333 3489999999999996
No 268
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.52 E-value=2.4e-13 Score=117.37 Aligned_cols=118 Identities=16% Similarity=0.215 Sum_probs=82.2
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCc--CCC---C---------------CCCccceeEEEEEEEECCeEEEEEEEeCC
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNE--FNP---H---------------SKATIGVEFQTQSMEIDGKEVKAQIWDTA 73 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~~---~---------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 73 (222)
....+|+|+|++++|||||+++|+... ... . .....+..+......++...+.+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 345699999999999999999986321 100 0 00112344444455555567888999999
Q ss_pred CcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040481 74 GQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLES 135 (222)
Q Consensus 74 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 135 (222)
|+..+.......+..+|++|+|+|+.+... .....++..... .++|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence 998887767778899999999999987522 222344443332 4579999999999863
No 269
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.51 E-value=2.4e-13 Score=105.36 Aligned_cols=161 Identities=17% Similarity=0.200 Sum_probs=105.3
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEE-ECCeEEEEEEEeCCCcch-------hhhhHHHh
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSME-IDGKEVKAQIWDTAGQER-------FRAVTSAY 85 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~D~~G~~~-------~~~~~~~~ 85 (222)
...++|+++|..|+|||||+|+|+.+...+...-..+.+.....+. +++ -.+.+||+||.++ +......+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHH
Confidence 4568999999999999999999997766554433323333332222 233 3467999999554 66778889
Q ss_pred hcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcC-------CCCCHHHHHHHHHH--------
Q 040481 86 YRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI-------RNVSTEEGKSLAEA-------- 150 (222)
Q Consensus 86 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~-------~~~~~~~~~~~~~~-------- 150 (222)
+...|.+++++++.|+.=--. .++++.+.... .+.++++++|.+|.... .......++++..+
T Consensus 115 l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTD-EDFLRDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred hhhccEEEEeccCCCccccCC-HHHHHHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999852111 33333332222 22688999999997532 01111122222221
Q ss_pred c--CCeEEEEccCCCCCHHHHHHHHHHHHH
Q 040481 151 E--GLFFMETSALDSTNVKSAFEIVIREIY 178 (222)
Q Consensus 151 ~--~~~~~~~sa~~~~~i~~~~~~i~~~~~ 178 (222)
. --|++.++...+.|++.+...+++.+-
T Consensus 193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 193 FQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 1 245777888999999999998888655
No 270
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.49 E-value=8.5e-13 Score=111.80 Aligned_cols=162 Identities=17% Similarity=0.335 Sum_probs=116.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECC--eEEEEEEEeCCCcchhhhhHHHhhcCC----
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDG--KEVKAQIWDTAGQERFRAVTSAYYRGA---- 89 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~---- 89 (222)
.-.|+|+|..++||||||.+|.+.. ...++.+.+|.+..+.-++ ....+++|-..|...+..+....+...
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~ 101 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN 101 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence 4589999999999999999987643 4456777888877765532 234578999888766666665555433
Q ss_pred CEEEEEEECCChhh-HHHHHHHHHHHHhcC--------------------------------------------------
Q 040481 90 VGALIVYDITRRTT-FDSISRWLDELKTHS-------------------------------------------------- 118 (222)
Q Consensus 90 d~vi~v~d~~~~~s-~~~~~~~~~~i~~~~-------------------------------------------------- 118 (222)
-+||+|+|.+.++. ++.+.+|+..++.+.
T Consensus 102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~ 181 (472)
T PF05783_consen 102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES 181 (472)
T ss_pred eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence 26889999999875 445566653322210
Q ss_pred ------------CCCCcEEEEEeCCCCCc----CCC-------CCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 040481 119 ------------DTTVARMLVGNKCDLES----IRN-------VSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIR 175 (222)
Q Consensus 119 ------------~~~~p~iiv~nK~Dl~~----~~~-------~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 175 (222)
+.++|++||++|+|... ... +..+.++.||..+|+.++.+|++...+++-++++|.+
T Consensus 182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h 261 (472)
T PF05783_consen 182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILH 261 (472)
T ss_pred ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHH
Confidence 01589999999999632 111 2223467888899999999999999999999999888
Q ss_pred HHHHH
Q 040481 176 EIYSN 180 (222)
Q Consensus 176 ~~~~~ 180 (222)
.++..
T Consensus 262 ~l~~~ 266 (472)
T PF05783_consen 262 RLYGF 266 (472)
T ss_pred HhccC
Confidence 87654
No 271
>PRK00007 elongation factor G; Reviewed
Probab=99.48 E-value=5.7e-13 Score=119.10 Aligned_cols=117 Identities=21% Similarity=0.194 Sum_probs=80.0
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcC--CC---C-------------CCCccceeEEEEEEEECCeEEEEEEEeCCC
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEF--NP---H-------------SKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~--~~---~-------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 74 (222)
.+...+|+|+|++++|||||+++|+.... .. . ....++.+.....+.+ .+..+.++||||
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~--~~~~~~liDTPG 84 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW--KDHRINIIDTPG 84 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE--CCeEEEEEeCCC
Confidence 44567999999999999999999974211 00 0 1122233333333333 356788999999
Q ss_pred cchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040481 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLES 135 (222)
Q Consensus 75 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 135 (222)
+..+.......+..+|++++|+|+..+..-.....| ..+.. .++|+++++||+|+..
T Consensus 85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~-~~~~~---~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVW-RQADK---YKVPRIAFVNKMDRTG 141 (693)
T ss_pred cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHH-HHHHH---cCCCEEEEEECCCCCC
Confidence 988877677788999999999999877543332222 22322 4578899999999875
No 272
>PRK12740 elongation factor G; Reviewed
Probab=99.46 E-value=1.4e-12 Score=116.63 Aligned_cols=107 Identities=22% Similarity=0.251 Sum_probs=74.5
Q ss_pred EcCCCCCHHHHHHHHhcCcCCCC------------------CCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHH
Q 040481 22 IGDSAVGKSNLLSRYARNEFNPH------------------SKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTS 83 (222)
Q Consensus 22 ~G~~~~GKStli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 83 (222)
+|+.++|||||+++|+....... .....+.......+.+ ..+.+.+|||||+..+...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~--~~~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW--KGHKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE--CCEEEEEEECCCcHHHHHHHH
Confidence 69999999999999955321100 0112223333333433 456788999999988877788
Q ss_pred HhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040481 84 AYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134 (222)
Q Consensus 84 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~ 134 (222)
..+..+|++++|+|++..........| ..+.. .++|+++|+||+|+.
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCC
Confidence 889999999999999987665443333 23322 457999999999975
No 273
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.45 E-value=2.4e-12 Score=117.59 Aligned_cols=143 Identities=20% Similarity=0.200 Sum_probs=90.7
Q ss_pred CHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCe-----------E-----EEEEEEeCCCcchhhhhHHHhhcCCCE
Q 040481 28 GKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGK-----------E-----VKAQIWDTAGQERFRAVTSAYYRGAVG 91 (222)
Q Consensus 28 GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-----~~~~i~D~~G~~~~~~~~~~~~~~~d~ 91 (222)
+||||+++|.+..........++..+--..+..+.. . -.+.||||||++.+..+....+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 499999999887664433322222222222222210 0 127899999999998887778888999
Q ss_pred EEEEEECCC---hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCC------------HHH-HHH---------
Q 040481 92 ALIVYDITR---RTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVS------------TEE-GKS--------- 146 (222)
Q Consensus 92 vi~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~------------~~~-~~~--------- 146 (222)
+++|+|+++ +++++.+. .+.. .++|+++|+||+|+....... .+. ..+
T Consensus 553 vlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~ 625 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELI 625 (1049)
T ss_pred EEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence 999999987 44443332 2332 347999999999986322210 010 001
Q ss_pred --HHH--------------HcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 040481 147 --LAE--------------AEGLFFMETSALDSTNVKSAFEIVIREI 177 (222)
Q Consensus 147 --~~~--------------~~~~~~~~~sa~~~~~i~~~~~~i~~~~ 177 (222)
++. ...++++++||++|+|+++++..+....
T Consensus 626 ~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 626 GKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred hHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 111 1146799999999999999998776543
No 274
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=2.1e-12 Score=96.35 Aligned_cols=113 Identities=18% Similarity=0.282 Sum_probs=77.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhc---CCCEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYR---GAVGAL 93 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~d~vi 93 (222)
..|+++|+.+||||+|+-.|..+........ ++-......+.... ++++|.|||.+...-...++. ++-+++
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtS---iepn~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTS---IEPNEATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeee---eccceeeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 4799999999999999999988753322211 11122222233322 679999999998877777776 789999
Q ss_pred EEEECCC-hhhHHHHHH-HHHHHHhc--CCCCCcEEEEEeCCCCC
Q 040481 94 IVYDITR-RTTFDSISR-WLDELKTH--SDTTVARMLVGNKCDLE 134 (222)
Q Consensus 94 ~v~d~~~-~~s~~~~~~-~~~~i~~~--~~~~~p~iiv~nK~Dl~ 134 (222)
||+|... ......+.+ ++..+... ...++|++|+.||.|+.
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~ 158 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF 158 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence 9999853 223344433 44444444 35789999999999984
No 275
>PTZ00258 GTP-binding protein; Provisional
Probab=99.43 E-value=4.1e-12 Score=105.24 Aligned_cols=86 Identities=17% Similarity=0.193 Sum_probs=61.8
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCe---------------EEEEEEEeCCCcch-
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGK---------------EVKAQIWDTAGQER- 77 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~- 77 (222)
...++|+|+|.|+||||||+|+|++........|.++.+.....+.+.+. ..++.++|+||...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 45679999999999999999999887765544566565555555555432 23488999999432
Q ss_pred ------hhhhHHHhhcCCCEEEEEEECC
Q 040481 78 ------FRAVTSAYYRGAVGALIVYDIT 99 (222)
Q Consensus 78 ------~~~~~~~~~~~~d~vi~v~d~~ 99 (222)
........++.+|++++|+|+.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1223345678899999999983
No 276
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.42 E-value=9.7e-13 Score=118.04 Aligned_cols=117 Identities=21% Similarity=0.223 Sum_probs=80.3
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCc---------------CCCC---CCCccceeEEEEEEEECCeEEEEEEEeCCCc
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNE---------------FNPH---SKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 75 (222)
....+|+++|+.++|||||+++|+... +... +..+.........+.+++..+.+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 455799999999999999999997531 1110 1112222222223345667788999999999
Q ss_pred chhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040481 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134 (222)
Q Consensus 76 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~ 134 (222)
..|.......++.+|++|+|+|+.++...+....|.. +. ..+.|+++++||+|..
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~~---~~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-AL---KENVKPVLFINKVDRL 151 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-HH---HcCCCEEEEEEChhcc
Confidence 9888888888999999999999988643222222222 22 2346888999999985
No 277
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.41 E-value=5.7e-12 Score=99.16 Aligned_cols=122 Identities=17% Similarity=0.186 Sum_probs=73.9
Q ss_pred CCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCC-CccceeEEEEEEEECCeEEEEEEEeCCCcchhh--h-h-----
Q 040481 11 GGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSK-ATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFR--A-V----- 81 (222)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--~-~----- 81 (222)
......++|+++|.+|+|||||+|+|++........ ...+..........++ ..+.+|||||..... . .
T Consensus 26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~ 103 (249)
T cd01853 26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKIL 103 (249)
T ss_pred hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHH
Confidence 456677999999999999999999999976543322 2223333333333343 567899999965431 0 1
Q ss_pred --HHHhhc--CCCEEEEEEECCCh-hhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCc
Q 040481 82 --TSAYYR--GAVGALIVYDITRR-TTFDSISRWLDELKTHSD--TTVARMLVGNKCDLES 135 (222)
Q Consensus 82 --~~~~~~--~~d~vi~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~Dl~~ 135 (222)
...++. ..|+++||..++.. ..... ...++.+....+ .-.++++|.||+|...
T Consensus 104 ~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 104 SSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 122332 56888888777543 22221 233333333222 1246899999999753
No 278
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.41 E-value=4.2e-12 Score=101.48 Aligned_cols=153 Identities=22% Similarity=0.193 Sum_probs=106.6
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCC----------CC---------------------CCccceeEEEEEEEEC
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNP----------HS---------------------KATIGVEFQTQSMEID 61 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~----------~~---------------------~~~~~~~~~~~~~~~~ 61 (222)
....+|.+.+|.-.-||||||=+|+...-.. .+ ....|+++.+.+.-+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 3456899999999999999999986643100 00 1123666777777777
Q ss_pred CeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCH
Q 040481 62 GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVST 141 (222)
Q Consensus 62 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~ 141 (222)
....+|.+-|||||++|-.+.......||+.|+++|+-.+- ....+-...+.....- ..+++.+||+||.+..+-..
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv--l~QTrRHs~I~sLLGI-rhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV--LEQTRRHSFIASLLGI-RHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh--HHHhHHHHHHHHHhCC-cEEEEEEeeecccccCHHHH
Confidence 77888999999999999887777788899999999996552 1111212222222111 25567789999987655444
Q ss_pred HH----HHHHHHHcCCe---EEEEccCCCCCHHH
Q 040481 142 EE----GKSLAEAEGLF---FMETSALDSTNVKS 168 (222)
Q Consensus 142 ~~----~~~~~~~~~~~---~~~~sa~~~~~i~~ 168 (222)
+. -..|+..++.. ++++||..|.||-.
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 43 34667777654 99999999999865
No 279
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.41 E-value=8e-12 Score=95.29 Aligned_cols=103 Identities=14% Similarity=0.095 Sum_probs=65.6
Q ss_pred EEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHH
Q 040481 65 VKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEG 144 (222)
Q Consensus 65 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~ 144 (222)
....++++.|.......... -+|.+|.|+|+.+..+... .+...+ ...=++++||+|+.+......+..
T Consensus 92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHH
Confidence 34568888884332222222 2588999999998766321 111111 112289999999974322333333
Q ss_pred HHHHHH--cCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 040481 145 KSLAEA--EGLFFMETSALDSTNVKSAFEIVIREIY 178 (222)
Q Consensus 145 ~~~~~~--~~~~~~~~sa~~~~~i~~~~~~i~~~~~ 178 (222)
.+.... .+++++++||++|+|+.++|+++.++++
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 444443 4678999999999999999999987543
No 280
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.40 E-value=9e-12 Score=99.73 Aligned_cols=126 Identities=13% Similarity=0.091 Sum_probs=72.8
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCC-CccceeEEEEEEEECCeEEEEEEEeCCCcchhhh-------hHHH
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSK-ATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRA-------VTSA 84 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~ 84 (222)
....++|+++|.+|+||||++|+|++........ .+.+..........+ +..+.+|||||...... ....
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~ik~ 112 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNIIKR 112 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHHHH
Confidence 3567899999999999999999999876532211 222222222222233 46788999999654311 1122
Q ss_pred hh--cCCCEEEEEEECCChhhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCcCCCCC
Q 040481 85 YY--RGAVGALIVYDITRRTTFDSISRWLDELKTHSD--TTVARMLVGNKCDLESIRNVS 140 (222)
Q Consensus 85 ~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~Dl~~~~~~~ 140 (222)
++ ...|+++||.+++.....+.-...+..+..... .-.+++|++|+.|..+.+..+
T Consensus 113 ~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~ 172 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLE 172 (313)
T ss_pred HhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCC
Confidence 22 258999999776532111111223333333211 224679999999976444333
No 281
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.40 E-value=8.9e-12 Score=105.24 Aligned_cols=166 Identities=16% Similarity=0.230 Sum_probs=126.0
Q ss_pred CCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCC
Q 040481 11 GGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAV 90 (222)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 90 (222)
+..+..+++.++|+.++|||.|++.++++.+...+..+....+.+..+...+...++.+.|++-. ......... ..||
T Consensus 420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cD 497 (625)
T KOG1707|consen 420 QTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACD 497 (625)
T ss_pred cccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceee
Confidence 44556689999999999999999999999988877777777788887777788778888888754 222222222 7789
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCe-EEEEccCCCCCHHHH
Q 040481 91 GALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLF-FMETSALDSTNVKSA 169 (222)
Q Consensus 91 ~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~~ 169 (222)
++.++||.+++.+|+.+...++..... .+.|+++|++|.|+.+..+...-...+++.+++++ .+.+|.+.... .++
T Consensus 498 v~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~l 574 (625)
T KOG1707|consen 498 VACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NEL 574 (625)
T ss_pred eEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chH
Confidence 999999999999999887766655444 67899999999999764432222227899999987 67778775333 889
Q ss_pred HHHHHHHHHHHh
Q 040481 170 FEIVIREIYSNV 181 (222)
Q Consensus 170 ~~~i~~~~~~~~ 181 (222)
|.+|...+....
T Consensus 575 f~kL~~~A~~Ph 586 (625)
T KOG1707|consen 575 FIKLATMAQYPH 586 (625)
T ss_pred HHHHHHhhhCCC
Confidence 999888766443
No 282
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.39 E-value=5.7e-12 Score=97.21 Aligned_cols=161 Identities=21% Similarity=0.184 Sum_probs=91.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCC--CCccceeEEEEEEEECCeEEEEEEEeCCCcchh-------hhhH----H
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHS--KATIGVEFQTQSMEIDGKEVKAQIWDTAGQERF-------RAVT----S 83 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~----~ 83 (222)
++|+++|..|+||||++|.+++....... ....+..........++ ..+.++||||-... ...+ .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 58999999999999999999998765433 23334445555556666 44679999993221 1111 1
Q ss_pred HhhcCCCEEEEEEECCChhhHHHH--HHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCC-------HHHHHHHHHHcCCe
Q 040481 84 AYYRGAVGALIVYDITRRTTFDSI--SRWLDELKTHSDTTVARMLVGNKCDLESIRNVS-------TEEGKSLAEAEGLF 154 (222)
Q Consensus 84 ~~~~~~d~vi~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~-------~~~~~~~~~~~~~~ 154 (222)
......++++||+.+. +.+-... .+++..+.... .-..++||+|..|......+. ......+....+-.
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~-~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEE-IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGG-GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHH-HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 2345689999999998 4332222 22333332221 113578888888865433311 12244556666777
Q ss_pred EEEEccC------CCCCHHHHHHHHHHHHHHHh
Q 040481 155 FMETSAL------DSTNVKSAFEIVIREIYSNV 181 (222)
Q Consensus 155 ~~~~sa~------~~~~i~~~~~~i~~~~~~~~ 181 (222)
|...+.+ ....+.+++..+-+.+.+..
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 7777665 23567777776666555554
No 283
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.38 E-value=2.2e-12 Score=101.46 Aligned_cols=96 Identities=19% Similarity=0.209 Sum_probs=77.9
Q ss_pred chhhhhHHHhhcCCCEEEEEEECCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCe
Q 040481 76 ERFRAVTSAYYRGAVGALIVYDITRRT-TFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLF 154 (222)
Q Consensus 76 ~~~~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 154 (222)
+++..+.+.+++++|++++|||+.++. +++.+.+|+..+.. .++|+++|+||+||.+......+....+ ...+++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence 556667778899999999999999887 89999999987754 5589999999999975444443444444 357889
Q ss_pred EEEEccCCCCCHHHHHHHHHH
Q 040481 155 FMETSALDSTNVKSAFEIVIR 175 (222)
Q Consensus 155 ~~~~sa~~~~~i~~~~~~i~~ 175 (222)
++++||++|.|++++|..+..
T Consensus 100 v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEEecCCchhHHHHHhhhcC
Confidence 999999999999999987764
No 284
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.37 E-value=4.8e-11 Score=97.38 Aligned_cols=117 Identities=19% Similarity=0.219 Sum_probs=81.6
Q ss_pred EEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCCh----------hhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCC
Q 040481 64 EVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRR----------TTFDSISRWLDELKTHSD-TTVARMLVGNKCD 132 (222)
Q Consensus 64 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~----------~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D 132 (222)
.+.+.+||++|+......|..++..++++|||+|+++. ..+......+..+..... .+.|+++++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 46688999999999999999999999999999999874 234333333444433322 6789999999999
Q ss_pred CCcC--------------C--CCCHHHHHHHHHH----------cCCeEEEEccCCCCCHHHHHHHHHHHHHHH
Q 040481 133 LESI--------------R--NVSTEEGKSLAEA----------EGLFFMETSALDSTNVKSAFEIVIREIYSN 180 (222)
Q Consensus 133 l~~~--------------~--~~~~~~~~~~~~~----------~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~ 180 (222)
+-.+ . ....+.+..+... ..+.+..++|.+..++..+|..+.+.++..
T Consensus 240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 6210 0 1233444444332 123456788999999999998877766654
No 285
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.37 E-value=9.8e-12 Score=87.32 Aligned_cols=114 Identities=31% Similarity=0.374 Sum_probs=82.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCC-CccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSK-ATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIV 95 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 95 (222)
+||+++|+.|+|||+|+.++....+...+. ++.+ +.......++.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 489999999999999999997766644333 3322 222334467888999999
Q ss_pred EECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 040481 96 YDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVK 167 (222)
Q Consensus 96 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 167 (222)
++..+..+++.+ |...+....+..+|.++++||.|+.+...+..+... .++++|++++.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHHhCCCcchhh
Confidence 999999998766 887777666677888999999998543344333332 35567888888874
No 286
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.36 E-value=6.1e-11 Score=97.31 Aligned_cols=83 Identities=18% Similarity=0.158 Sum_probs=58.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeE---------------EEEEEEeCCCcch----
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKE---------------VKAQIWDTAGQER---- 77 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~---- 77 (222)
++|+++|.|+||||||+|+|++........|.++.+.....+.+.+.. ..+.++|+||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 689999999999999999999987544444555555555555544421 2588999999432
Q ss_pred ---hhhhHHHhhcCCCEEEEEEECC
Q 040481 78 ---FRAVTSAYYRGAVGALIVYDIT 99 (222)
Q Consensus 78 ---~~~~~~~~~~~~d~vi~v~d~~ 99 (222)
........++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1112334578999999999984
No 287
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.33 E-value=2.7e-11 Score=94.26 Aligned_cols=142 Identities=15% Similarity=0.171 Sum_probs=83.8
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEE
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 92 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 92 (222)
......|+++|++|+|||||++.|.+...........+. +. + .......+.++|+||.. . ......+.+|++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~---i-~~~~~~~i~~vDtPg~~--~-~~l~~ak~aDvV 107 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-IT---V-VTGKKRRLTFIECPNDI--N-AMIDIAKVADLV 107 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EE---E-EecCCceEEEEeCCchH--H-HHHHHHHhcCEE
Confidence 344467999999999999999999865321111111111 11 1 11234567899999864 2 223446889999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCcEE-EEEeCCCCCcCCCCC---HHHHHH-HHHH--cCCeEEEEccCCCCC
Q 040481 93 LIVYDITRRTTFDSISRWLDELKTHSDTTVARM-LVGNKCDLESIRNVS---TEEGKS-LAEA--EGLFFMETSALDSTN 165 (222)
Q Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-iv~nK~Dl~~~~~~~---~~~~~~-~~~~--~~~~~~~~sa~~~~~ 165 (222)
++|+|+........ ...+..+.. .+.|.+ +|+||.|+.+..... ...++. +... .+.+++.+||+++-.
T Consensus 108 llviDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 108 LLLIDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred EEEEecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence 99999987644222 233333333 346754 599999986422111 112222 2221 357899999998744
Q ss_pred H
Q 040481 166 V 166 (222)
Q Consensus 166 i 166 (222)
+
T Consensus 184 ~ 184 (225)
T cd01882 184 Y 184 (225)
T ss_pred C
Confidence 3
No 288
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=5.6e-12 Score=99.60 Aligned_cols=163 Identities=19% Similarity=0.131 Sum_probs=106.0
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCC---CCCCccceeEEEE------------------EEEEC------CeEEE
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNP---HSKATIGVEFQTQ------------------SMEID------GKEVK 66 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~------------------~~~~~------~~~~~ 66 (222)
+.+++|.++|+-..|||||.++|.+--... +....+++..-+. .-.+. .-...
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 678999999999999999999997743211 1111111111111 00111 12356
Q ss_pred EEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCC--CCCHHHH
Q 040481 67 AQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIR--NVSTEEG 144 (222)
Q Consensus 67 ~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~ 144 (222)
+.|+|+||++-+-........-.|+.++|++++++-.-....+-+..+.-..- ..++|+-||.|++... ....+++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigi--k~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGI--KNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhcc--ceEEEEecccceecHHHHHHHHHHH
Confidence 78999999998866655555667999999999875322222333333333222 3568889999997532 2445566
Q ss_pred HHHHHH---cCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 040481 145 KSLAEA---EGLFFMETSALDSTNVKSAFEIVIREIY 178 (222)
Q Consensus 145 ~~~~~~---~~~~~~~~sa~~~~~i~~~~~~i~~~~~ 178 (222)
++|.+. .+++++++||..+.||+.+++.|.+.+-
T Consensus 166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 777665 3788999999999999999886666543
No 289
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.32 E-value=2.8e-12 Score=96.87 Aligned_cols=147 Identities=20% Similarity=0.280 Sum_probs=97.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhh-----hhHHHhhcCC
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFN-PHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFR-----AVTSAYYRGA 89 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-----~~~~~~~~~~ 89 (222)
.-||+++|.+|+|||++--.+..+... ....++.++++....+.+-| .+.+++||++|++.+- ......++++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 358999999999999987666654432 23345555677766666655 3558899999988542 2344678999
Q ss_pred CEEEEEEECCChhhHHHHHHHHH---HHHhcCCCCCcEEEEEeCCCCCcC--CCCCHHH----HHHHHHHcCCeEEEEcc
Q 040481 90 VGALIVYDITRRTTFDSISRWLD---ELKTHSDTTVARMLVGNKCDLESI--RNVSTEE----GKSLAEAEGLFFMETSA 160 (222)
Q Consensus 90 d~vi~v~d~~~~~s~~~~~~~~~---~i~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~----~~~~~~~~~~~~~~~sa 160 (222)
+++|+|||+...+--..+..+-. .+.+.. +...+++..+|+|+... +....++ .+......++.++++|.
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~S-P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNS-PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcC-CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 99999999988865444444433 333333 44567888999999642 2222222 23333445677888888
Q ss_pred CCCC
Q 040481 161 LDST 164 (222)
Q Consensus 161 ~~~~ 164 (222)
.+..
T Consensus 162 wDet 165 (295)
T KOG3886|consen 162 WDET 165 (295)
T ss_pred hhHH
Confidence 8754
No 290
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.32 E-value=7.7e-12 Score=113.90 Aligned_cols=118 Identities=20% Similarity=0.205 Sum_probs=80.6
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCC--C--------------CCCCccceeEEEEEEEE--------------CC
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFN--P--------------HSKATIGVEFQTQSMEI--------------DG 62 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~--------------~~ 62 (222)
.+...+|+|+|+.++|||||+.+|+..... . +.....++......+.+ .+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 455679999999999999999999764321 0 00011111111122222 12
Q ss_pred eEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040481 63 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134 (222)
Q Consensus 63 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~ 134 (222)
..+.++++||||+..|.......++.+|++|+|+|+.++-.......|.. + ...++|+++++||+|..
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~-~---~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-A---LGERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHH-H---HHCCCCEEEEEECCccc
Confidence 36778999999999998888888999999999999998754333233332 2 23457999999999986
No 291
>PRK13768 GTPase; Provisional
Probab=99.31 E-value=1.5e-11 Score=97.26 Aligned_cols=113 Identities=18% Similarity=0.137 Sum_probs=68.3
Q ss_pred EEEEEeCCCcchhh---hhHHHh---hcC--CCEEEEEEECCChhhHHH-HHHHHHHHHhcCCCCCcEEEEEeCCCCCcC
Q 040481 66 KAQIWDTAGQERFR---AVTSAY---YRG--AVGALIVYDITRRTTFDS-ISRWLDELKTHSDTTVARMLVGNKCDLESI 136 (222)
Q Consensus 66 ~~~i~D~~G~~~~~---~~~~~~---~~~--~d~vi~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~ 136 (222)
.+.+||+||..++. ..+..+ +.. .+++++|+|+........ ...++-.+......++|+++|+||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 46799999976532 222222 232 899999999976543222 222222211111246899999999998653
Q ss_pred CCCCH--HHHH------------------------HHHHHcC--CeEEEEccCCCCCHHHHHHHHHHHHH
Q 040481 137 RNVST--EEGK------------------------SLAEAEG--LFFMETSALDSTNVKSAFEIVIREIY 178 (222)
Q Consensus 137 ~~~~~--~~~~------------------------~~~~~~~--~~~~~~sa~~~~~i~~~~~~i~~~~~ 178 (222)
..... .... +.....+ .+++++|++++.|+++++++|.+.+.
T Consensus 178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 22210 0000 1122223 57899999999999999998877653
No 292
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.31 E-value=2.4e-11 Score=100.34 Aligned_cols=160 Identities=18% Similarity=0.193 Sum_probs=106.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCC--------------CCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhH
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPH--------------SKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVT 82 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 82 (222)
-+|+|+-+-..|||||++.|+.++..-. .....|+++--+..-+...++.++|+|||||..|....
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 4799999999999999999988653211 11223444444444445556788999999999999999
Q ss_pred HHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC--CCHHHHHHHH------HHcCCe
Q 040481 83 SAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRN--VSTEEGKSLA------EAEGLF 154 (222)
Q Consensus 83 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~------~~~~~~ 154 (222)
...+..+|++++++|+.++-- .+..--+......+.+.|+|+||+|-+..+. +..+-..-|. ++++.|
T Consensus 86 ERvl~MVDgvlLlVDA~EGpM----PQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFP 161 (603)
T COG1217 86 ERVLSMVDGVLLLVDASEGPM----PQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFP 161 (603)
T ss_pred hhhhhhcceEEEEEEcccCCC----CchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCc
Confidence 999999999999999988632 1111112222234456699999999865322 2222222222 234677
Q ss_pred EEEEccCCC----------CCHHHHHHHHHHHHHHH
Q 040481 155 FMETSALDS----------TNVKSAFEIVIREIYSN 180 (222)
Q Consensus 155 ~~~~sa~~~----------~~i~~~~~~i~~~~~~~ 180 (222)
++-.|+..| .++.-+|+.|++++...
T Consensus 162 ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P 197 (603)
T COG1217 162 IVYASARNGTASLDPEDEADDMAPLFETILDHVPAP 197 (603)
T ss_pred EEEeeccCceeccCccccccchhHHHHHHHHhCCCC
Confidence 888888765 34667777777766543
No 293
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.31 E-value=1.1e-11 Score=103.98 Aligned_cols=171 Identities=19% Similarity=0.310 Sum_probs=130.4
Q ss_pred CCCCCCCCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHH
Q 040481 5 DEEGGGGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSA 84 (222)
Q Consensus 5 ~~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 84 (222)
++|++-+...+++|+.|||..++|||+|+++++.+.+.....+.-+ .+.+.+..++...-+.+.|.+|... ..
T Consensus 19 sqewtlsrsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~~-----aQ 91 (749)
T KOG0705|consen 19 SQEWTLSRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHPD-----AQ 91 (749)
T ss_pred ccceeeecccchhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCch-----hh
Confidence 5778888888999999999999999999999999887666555432 3445555677777788889888433 34
Q ss_pred hhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCc--CCCCCHHHHHHHH-HHcCCeEEEEcc
Q 040481 85 YYRGAVGALIVYDITRRTTFDSISRWLDELKTHSD-TTVARMLVGNKCDLES--IRNVSTEEGKSLA-EAEGLFFMETSA 160 (222)
Q Consensus 85 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl~~--~~~~~~~~~~~~~-~~~~~~~~~~sa 160 (222)
|...+|++||||.+.+..+|+.+..+.-.+..... ..+|+++++++.-... .+.+.....++++ +...+.||++++
T Consensus 92 ft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~a 171 (749)
T KOG0705|consen 92 FCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCA 171 (749)
T ss_pred hhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecch
Confidence 56779999999999999999999887766655443 5688888888765432 2334444555444 445688999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhh
Q 040481 161 LDSTNVKSAFEIVIREIYSNVS 182 (222)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~~~~ 182 (222)
..|.++..+|..++.++...+.
T Consensus 172 tyGlnv~rvf~~~~~k~i~~~~ 193 (749)
T KOG0705|consen 172 TYGLNVERVFQEVAQKIVQLRK 193 (749)
T ss_pred hhhhhHHHHHHHHHHHHHHHHh
Confidence 9999999999999887776644
No 294
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=2.1e-11 Score=105.41 Aligned_cols=162 Identities=19% Similarity=0.211 Sum_probs=108.0
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCC----CCccceeEEEEE----------------EEECCeEEEEEEEeC
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHS----KATIGVEFQTQS----------------MEIDGKEVKAQIWDT 72 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~----~~~~~~~~~~~~----------------~~~~~~~~~~~i~D~ 72 (222)
.-+.+-+||+|+..+|||-|+..+.+....... ...+|.++.... +.+. -+.++||
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvP----g~lvIdt 547 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVP----GLLVIDT 547 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCC----eeEEecC
Confidence 334567999999999999999999775442221 222233333221 1111 2679999
Q ss_pred CCcchhhhhHHHhhcCCCEEEEEEECCCh---hhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC-CC--------
Q 040481 73 AGQERFRAVTSAYYRGAVGALIVYDITRR---TTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRN-VS-------- 140 (222)
Q Consensus 73 ~G~~~~~~~~~~~~~~~d~vi~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~-~~-------- 140 (222)
||++.|..+.......||.+|+|+|+..+ ++++. ++.++. ...|+||.+||+|-...+. ..
T Consensus 548 pghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiES----i~lLR~---rktpFivALNKiDRLYgwk~~p~~~i~~~l 620 (1064)
T KOG1144|consen 548 PGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIES----INLLRM---RKTPFIVALNKIDRLYGWKSCPNAPIVEAL 620 (1064)
T ss_pred CCchhhhhhhhccccccceEEEEeehhccCCcchhHH----HHHHHh---cCCCeEEeehhhhhhcccccCCCchHHHHH
Confidence 99999999988899999999999999875 33222 333333 5579999999999532110 00
Q ss_pred --------H-------HHHHHHHHH-cC-------------CeEEEEccCCCCCHHHHHHHHHHHHHHHhhhhc
Q 040481 141 --------T-------EEGKSLAEA-EG-------------LFFMETSALDSTNVKSAFEIVIREIYSNVSRKV 185 (222)
Q Consensus 141 --------~-------~~~~~~~~~-~~-------------~~~~~~sa~~~~~i~~~~~~i~~~~~~~~~~~~ 185 (222)
. ..+.+|+.+ ++ +.++++||..|+||.+++.+|++........+.
T Consensus 621 kkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl 694 (1064)
T KOG1144|consen 621 KKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKL 694 (1064)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 0 011222221 11 347899999999999999999998877766655
No 295
>PTZ00416 elongation factor 2; Provisional
Probab=99.31 E-value=1.1e-11 Score=112.69 Aligned_cols=118 Identities=18% Similarity=0.182 Sum_probs=79.1
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCC----------------CCCCccceeEEEEEEEEC--------CeEEEEE
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNP----------------HSKATIGVEFQTQSMEID--------GKEVKAQ 68 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~--------~~~~~~~ 68 (222)
.+...+|+++|+.++|||||+++|+...... +....+++........+. +..+.+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 3445699999999999999999998632110 000111111111222222 2256788
Q ss_pred EEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040481 69 IWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134 (222)
Q Consensus 69 i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~ 134 (222)
++||||+..+.......++.+|++|+|+|+.++-.-.....| ..+.. .++|+++++||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHH---cCCCEEEEEEChhhh
Confidence 999999999888788889999999999999887443322223 33322 347999999999986
No 296
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.31 E-value=3.2e-10 Score=93.37 Aligned_cols=116 Identities=15% Similarity=0.199 Sum_probs=80.0
Q ss_pred EEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCCh----------hhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCC
Q 040481 65 VKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRR----------TTFDSISRWLDELKTHS-DTTVARMLVGNKCDL 133 (222)
Q Consensus 65 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl 133 (222)
+.+.+||++|+......|..++..++++|||+|+++. ..+......+..+.... -.+.|++|++||.|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 5578999999999999999999999999999999973 23444444444444332 266899999999997
Q ss_pred CcC--------------C-CCCHHHHHHHHHH-----c------CCeEEEEccCCCCCHHHHHHHHHHHHHHH
Q 040481 134 ESI--------------R-NVSTEEGKSLAEA-----E------GLFFMETSALDSTNVKSAFEIVIREIYSN 180 (222)
Q Consensus 134 ~~~--------------~-~~~~~~~~~~~~~-----~------~~~~~~~sa~~~~~i~~~~~~i~~~~~~~ 180 (222)
-.. . ....+.+..+... . .+....++|.+..++..+|..+.+.++..
T Consensus 264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~ 336 (342)
T smart00275 264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR 336 (342)
T ss_pred HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence 210 0 0123344333322 1 13356788999999999998777766544
No 297
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.30 E-value=4.6e-11 Score=107.57 Aligned_cols=118 Identities=25% Similarity=0.227 Sum_probs=78.7
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCC----------------CCccceeEEEEEE--EECCeEEEEEEEeCCC
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHS----------------KATIGVEFQTQSM--EIDGKEVKAQIWDTAG 74 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~----------------~~~~~~~~~~~~~--~~~~~~~~~~i~D~~G 74 (222)
.....+|+++|+.++|||||+.+|+........ ...+++......+ .+++..+.+.++||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 345568999999999999999999763211000 0001111111111 2344567889999999
Q ss_pred cchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040481 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134 (222)
Q Consensus 75 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~ 134 (222)
+..|.......++.+|++|+|+|+..+..-.....|.... . .+.|.++++||+|..
T Consensus 97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~-~---~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQAL-R---ERVKPVLFINKVDRL 152 (731)
T ss_pred ccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHH-H---cCCCeEEEEECchhh
Confidence 9998888888899999999999998874433223333222 2 235778999999975
No 298
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.29 E-value=4.5e-11 Score=91.93 Aligned_cols=149 Identities=15% Similarity=0.169 Sum_probs=83.6
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCC------------CCCCc----cceeEEEEEEEECC---------------
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNP------------HSKAT----IGVEFQTQSMEIDG--------------- 62 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~------------~~~~~----~~~~~~~~~~~~~~--------------- 62 (222)
.....|+++|+.|+|||||+++++...... ..... .+.+ .... .++
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~--~~~l-~~gcic~~~~~~~~~~l~ 96 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAP--AIQI-NTGKECHLDAHMVAHALE 96 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCc--EEEE-cCCCcccCChHHHHHHHH
Confidence 346789999999999999999997641110 00000 0100 0000 000
Q ss_pred ----eEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC
Q 040481 63 ----KEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRN 138 (222)
Q Consensus 63 ----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~ 138 (222)
....+.++++.|.-.. . ..+....+..+.|+|+.+.... ...... . ...|.++++||+|+.+...
T Consensus 97 ~~~~~~~d~IiIEt~G~l~~-~--~~~~~~~~~~i~Vvd~~~~d~~--~~~~~~-~-----~~~a~iiv~NK~Dl~~~~~ 165 (207)
T TIGR00073 97 DLPLDDIDLLFIENVGNLVC-P--ADFDLGEHMRVVLLSVTEGDDK--PLKYPG-M-----FKEADLIVINKADLAEAVG 165 (207)
T ss_pred HhccCCCCEEEEecCCCcCC-C--cccccccCeEEEEEecCcccch--hhhhHh-H-----HhhCCEEEEEHHHccccch
Confidence 1234557777772110 0 0111223455667777655421 111111 1 2357799999999975322
Q ss_pred CCHHHHHHHHHHc--CCeEEEEccCCCCCHHHHHHHHHHH
Q 040481 139 VSTEEGKSLAEAE--GLFFMETSALDSTNVKSAFEIVIRE 176 (222)
Q Consensus 139 ~~~~~~~~~~~~~--~~~~~~~sa~~~~~i~~~~~~i~~~ 176 (222)
.......+..... .++++++||+++.|++++|+++.++
T Consensus 166 ~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 166 FDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 2233344444443 4889999999999999999998774
No 299
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.28 E-value=8.5e-11 Score=93.43 Aligned_cols=81 Identities=17% Similarity=0.144 Sum_probs=57.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeE---------------EEEEEEeCCCcch------
Q 040481 19 IVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKE---------------VKAQIWDTAGQER------ 77 (222)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~------ 77 (222)
|+|+|.|+||||||+|+|++........|.++.+.....+.+.+.. ..+.++|+||...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5799999999999999999987755445555555555555554432 2588999999432
Q ss_pred -hhhhHHHhhcCCCEEEEEEECC
Q 040481 78 -FRAVTSAYYRGAVGALIVYDIT 99 (222)
Q Consensus 78 -~~~~~~~~~~~~d~vi~v~d~~ 99 (222)
........++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1112334568899999999873
No 300
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1.4e-10 Score=92.59 Aligned_cols=153 Identities=16% Similarity=0.185 Sum_probs=94.9
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcC----CCC---CCCccceeEEEEEEEE-------CCeEEEEEEEeCCCcchhh
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEF----NPH---SKATIGVEFQTQSMEI-------DGKEVKAQIWDTAGQERFR 79 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~----~~~---~~~~~~~~~~~~~~~~-------~~~~~~~~i~D~~G~~~~~ 79 (222)
..++++.++|+-.+|||||.++|..... +.. .....+.+.-...+.. .++.+++.++|+||+..+-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 3458999999999999999999965432 111 1122222322222222 3456788999999998877
Q ss_pred hhHHHhhcCCCEEEEEEECCChhhHHHHHHH-HHHHHhcCCCCCcEEEEEeCCCCCcCC--C-CCHHHHHHHHHHc----
Q 040481 80 AVTSAYYRGAVGALIVYDITRRTTFDSISRW-LDELKTHSDTTVARMLVGNKCDLESIR--N-VSTEEGKSLAEAE---- 151 (222)
Q Consensus 80 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~-~~~i~~~~~~~~p~iiv~nK~Dl~~~~--~-~~~~~~~~~~~~~---- 151 (222)
........-.|..++|+|+..+..-..++.+ +..+.. ...+||+||.|...+. . ...+..+...+.+
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c-----~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~ 159 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC-----KKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG 159 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhc-----cceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC
Confidence 7766666778999999999887554444332 222222 2347778888865321 1 1122222333222
Q ss_pred ---CCeEEEEccCCC----CCHHHHHH
Q 040481 152 ---GLFFMETSALDS----TNVKSAFE 171 (222)
Q Consensus 152 ---~~~~~~~sa~~~----~~i~~~~~ 171 (222)
+.|++++||.+| +++.++.+
T Consensus 160 f~g~~PI~~vsa~~G~~~~~~i~eL~e 186 (522)
T KOG0461|consen 160 FDGNSPIVEVSAADGYFKEEMIQELKE 186 (522)
T ss_pred cCCCCceeEEecCCCccchhHHHHHHH
Confidence 478999999999 55555444
No 301
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.27 E-value=8.1e-11 Score=95.88 Aligned_cols=104 Identities=13% Similarity=0.068 Sum_probs=66.5
Q ss_pred EEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC--CH
Q 040481 64 EVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNV--ST 141 (222)
Q Consensus 64 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~--~~ 141 (222)
++.+.|+||+|....... ....+|.++++.+...+..+.....- + ..+.-++|+||+|+...... ..
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~g---i-----~E~aDIiVVNKaDl~~~~~a~~~~ 216 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKKG---I-----MELADLIVINKADGDNKTAARRAA 216 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHhh---h-----hhhhheEEeehhcccchhHHHHHH
Confidence 467889999997744322 35679999999876555544333221 1 11233899999998753211 11
Q ss_pred HHHHHHHHH-------cCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 040481 142 EEGKSLAEA-------EGLFFMETSALDSTNVKSAFEIVIREIY 178 (222)
Q Consensus 142 ~~~~~~~~~-------~~~~~~~~sa~~~~~i~~~~~~i~~~~~ 178 (222)
.+....... +..+++.+||.++.|++++++.+.+++.
T Consensus 217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 122222221 2367999999999999999998887644
No 302
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=2.8e-11 Score=102.32 Aligned_cols=158 Identities=22% Similarity=0.202 Sum_probs=107.5
Q ss_pred CCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCC-----------------------------CCccceeEEEEEEEEC
Q 040481 11 GGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHS-----------------------------KATIGVEFQTQSMEID 61 (222)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~ 61 (222)
......+.++++|+..+|||||.-+|+........ ....|+...+....++
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe 251 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE 251 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence 34446789999999999999999888553211110 1123566666677777
Q ss_pred CeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhh---HHHH--HHHHHHHHhcCCCCCcEEEEEeCCCCCcC
Q 040481 62 GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTT---FDSI--SRWLDELKTHSDTTVARMLVGNKCDLESI 136 (222)
Q Consensus 62 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s---~~~~--~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~ 136 (222)
.....+.++|+||+..|-.........+|+.|+|+|++.... |+.. .+.+..+.+..+ --.++|++||+|+.+.
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg-i~qlivaiNKmD~V~W 330 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG-ISQLIVAINKMDLVSW 330 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC-cceEEEEeecccccCc
Confidence 777889999999999998888888899999999999986531 2211 112222333322 2355777999999886
Q ss_pred CCCCHHHHH----HHH-HHc-----CCeEEEEccCCCCCHHHH
Q 040481 137 RNVSTEEGK----SLA-EAE-----GLFFMETSALDSTNVKSA 169 (222)
Q Consensus 137 ~~~~~~~~~----~~~-~~~-----~~~~~~~sa~~~~~i~~~ 169 (222)
.+-..+++. .|. +.. .+.|++||+..|+|+...
T Consensus 331 sq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 331 SQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred cHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 665555553 233 222 346999999999986543
No 303
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=4.4e-10 Score=91.24 Aligned_cols=85 Identities=19% Similarity=0.152 Sum_probs=61.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECC----------------eEEEEEEEeCCCc----
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDG----------------KEVKAQIWDTAGQ---- 75 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~G~---- 75 (222)
.+++.|+|.|+||||||+|+++.........|.++++-....+.+.. ....+.++|++|.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 47899999999999999999999886555666666554444333321 2356889999992
Q ss_pred ---chhhhhHHHhhcCCCEEEEEEECCC
Q 040481 76 ---ERFRAVTSAYYRGAVGALIVYDITR 100 (222)
Q Consensus 76 ---~~~~~~~~~~~~~~d~vi~v~d~~~ 100 (222)
+.+.....+.++.+|+++-|+++.+
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 2233345566899999999999974
No 304
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.23 E-value=2.2e-11 Score=94.41 Aligned_cols=173 Identities=17% Similarity=0.186 Sum_probs=93.7
Q ss_pred CCCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCc-------c-----ceeEEEEE--------------------
Q 040481 10 GGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKAT-------I-----GVEFQTQS-------------------- 57 (222)
Q Consensus 10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~-------~-----~~~~~~~~-------------------- 57 (222)
+....+.+-|+++|..|+|||||+++|..........|. . +..+.+..
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~ 92 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV 92 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchh
Confidence 445666788999999999999999999654322111110 0 00000000
Q ss_pred ----------------EEECCeEEEEEEEeCCCcchh------hhhHHHhhcCC--CEEEEEEECCChhh-HHHHHHHHH
Q 040481 58 ----------------MEIDGKEVKAQIWDTAGQERF------RAVTSAYYRGA--VGALIVYDITRRTT-FDSISRWLD 112 (222)
Q Consensus 58 ----------------~~~~~~~~~~~i~D~~G~~~~------~~~~~~~~~~~--d~vi~v~d~~~~~s-~~~~~~~~~ 112 (222)
+.-....+...++||||+-+. ...+...+... -++++|+|.....+ -..+...+-
T Consensus 93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlY 172 (366)
T KOG1532|consen 93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLY 172 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHH
Confidence 000012345779999997431 23333344443 35667777643221 111111111
Q ss_pred HHHhcCCCCCcEEEEEeCCCCCcCCC----CC----HHHHHH-----------------H-HHHcCCeEEEEccCCCCCH
Q 040481 113 ELKTHSDTTVARMLVGNKCDLESIRN----VS----TEEGKS-----------------L-AEAEGLFFMETSALDSTNV 166 (222)
Q Consensus 113 ~i~~~~~~~~p~iiv~nK~Dl~~~~~----~~----~~~~~~-----------------~-~~~~~~~~~~~sa~~~~~i 166 (222)
...-..+.+.|+|+++||.|+.+... +. .+++.+ + ....++..+-||+.+|.|.
T Consensus 173 AcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ 252 (366)
T KOG1532|consen 173 ACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGF 252 (366)
T ss_pred HHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcH
Confidence 11112235689999999999865211 00 011111 0 0112566899999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 040481 167 KSAFEIVIREIYSNVS 182 (222)
Q Consensus 167 ~~~~~~i~~~~~~~~~ 182 (222)
+++|..+-+.+-+...
T Consensus 253 ddf~~av~~~vdEy~~ 268 (366)
T KOG1532|consen 253 DDFFTAVDESVDEYEE 268 (366)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999877776655543
No 305
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.23 E-value=2e-10 Score=85.24 Aligned_cols=63 Identities=21% Similarity=0.216 Sum_probs=44.3
Q ss_pred EEEEEeCCCcch----hhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCC
Q 040481 66 KAQIWDTAGQER----FRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKC 131 (222)
Q Consensus 66 ~~~i~D~~G~~~----~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~ 131 (222)
.+.|+|+||... ....+..+++.+|++|+|.++....+-.....+........ ..+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~---~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDK---SRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTC---SSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCC---CeEEEEEcCC
Confidence 367999999533 34667888899999999999998766454455555554433 2478888984
No 306
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.22 E-value=1.8e-11 Score=95.78 Aligned_cols=110 Identities=17% Similarity=0.118 Sum_probs=56.3
Q ss_pred EEEEEeCCCcchhhhhHHHhh--------cCCCEEEEEEECCChhh-HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcC
Q 040481 66 KAQIWDTAGQERFRAVTSAYY--------RGAVGALIVYDITRRTT-FDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136 (222)
Q Consensus 66 ~~~i~D~~G~~~~~~~~~~~~--------~~~d~vi~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~ 136 (222)
.+.++||||+.++...+.... ...-++++++|.....+ ...+..++-.+......+.|.+.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 467999999988755544433 33457888999864332 222333333332222355799999999999752
Q ss_pred CC-------C------------CHHHHHHHHHHc----CC-eEEEEccCCCCCHHHHHHHHHH
Q 040481 137 RN-------V------------STEEGKSLAEAE----GL-FFMETSALDSTNVKSAFEIVIR 175 (222)
Q Consensus 137 ~~-------~------------~~~~~~~~~~~~----~~-~~~~~sa~~~~~i~~~~~~i~~ 175 (222)
.. . ........+... .. .++++|+.+++++.+++..+-+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~ 234 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDK 234 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHH
Confidence 10 0 001111122211 23 6999999999999999885544
No 307
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=1.9e-10 Score=94.75 Aligned_cols=155 Identities=17% Similarity=0.088 Sum_probs=105.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCC---CCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEE
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFN---PHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALI 94 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 94 (222)
-|...|+-..|||||+.++.+.... +.....++.+....+. +.....+.|+|+||++.+-....+.+...|..++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~--~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYR--KLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEec--cCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 4678899999999999999887643 2333334444444444 4444478899999999998888888899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH---HcCCeEEEEccCCCCCHHHHHH
Q 040481 95 VYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAE---AEGLFFMETSALDSTNVKSAFE 171 (222)
Q Consensus 95 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~sa~~~~~i~~~~~ 171 (222)
|++++++-.....++ +..+.-.. -...++|+||+|..+..++ .+..++... ..+.+++.+|+.+|.||+++.+
T Consensus 80 vV~~deGl~~qtgEh-L~iLdllg--i~~giivltk~D~~d~~r~-e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~ 155 (447)
T COG3276 80 VVAADEGLMAQTGEH-LLILDLLG--IKNGIIVLTKADRVDEARI-EQKIKQILADLSLANAKIFKTSAKTGRGIEELKN 155 (447)
T ss_pred EEeCccCcchhhHHH-HHHHHhcC--CCceEEEEeccccccHHHH-HHHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence 999976644333222 12221111 1133889999999864321 112222222 3457789999999999999999
Q ss_pred HHHHHHH
Q 040481 172 IVIREIY 178 (222)
Q Consensus 172 ~i~~~~~ 178 (222)
.|.+..-
T Consensus 156 ~l~~L~~ 162 (447)
T COG3276 156 ELIDLLE 162 (447)
T ss_pred HHHHhhh
Confidence 8888663
No 308
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.19 E-value=2.5e-10 Score=84.65 Aligned_cols=150 Identities=16% Similarity=0.083 Sum_probs=87.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEE-----------------E-EE-EE--C-------------
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQT-----------------Q-SM-EI--D------------- 61 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-----------------~-~~-~~--~------------- 61 (222)
.++|.+.|++|||||+|+.+++..........-++.+++. . +- -+ +
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 5899999999999999999876543222110111111111 0 00 00 0
Q ss_pred -CeEEEEEEEeCCCcchhhhhHHHhhcCCC-EEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC
Q 040481 62 -GKEVKAQIWDTAGQERFRAVTSAYYRGAV-GALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNV 139 (222)
Q Consensus 62 -~~~~~~~i~D~~G~~~~~~~~~~~~~~~d-~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~ 139 (222)
...+.+.|++.+|+ .-.. ..+.-.| .-|+|+|++.++-.- .+-.+.+. ..=++|+||.||.+....
T Consensus 93 ~~~~~Dll~iEs~GN-L~~~---~sp~L~d~~~v~VidvteGe~~P--~K~gP~i~------~aDllVInK~DLa~~v~~ 160 (202)
T COG0378 93 DFPDLDLLFIESVGN-LVCP---FSPDLGDHLRVVVIDVTEGEDIP--RKGGPGIF------KADLLVINKTDLAPYVGA 160 (202)
T ss_pred cCCcCCEEEEecCcc-eecc---cCcchhhceEEEEEECCCCCCCc--ccCCCcee------EeeEEEEehHHhHHHhCc
Confidence 01134556666661 1111 1112233 678888888874300 00011111 122799999999876666
Q ss_pred CHHHHHHHHHHc--CCeEEEEccCCCCCHHHHHHHHHHHH
Q 040481 140 STEEGKSLAEAE--GLFFMETSALDSTNVKSAFEIVIREI 177 (222)
Q Consensus 140 ~~~~~~~~~~~~--~~~~~~~sa~~~~~i~~~~~~i~~~~ 177 (222)
..+...+-++.. +++++++|.++|.|++++++++...+
T Consensus 161 dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 161 DLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred cHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 666666666665 57899999999999999999887653
No 309
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.19 E-value=1.7e-09 Score=89.26 Aligned_cols=143 Identities=17% Similarity=0.183 Sum_probs=88.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC----cCC------------CCCCCc---cceeEEE-----EEEE-ECCeEEEEEE
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARN----EFN------------PHSKAT---IGVEFQT-----QSME-IDGKEVKAQI 69 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~----~~~------------~~~~~~---~~~~~~~-----~~~~-~~~~~~~~~i 69 (222)
..+-|.++|+.++|||||+|+|.+. ... +.+.+. ++++-.. ..+. .++....+.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 3578999999999999999999987 322 111111 1222111 1222 2455678899
Q ss_pred EeCCCcch--------hhh---------------------hHHHhhc-CCCEEEEEE-ECC----ChhhHHHH-HHHHHH
Q 040481 70 WDTAGQER--------FRA---------------------VTSAYYR-GAVGALIVY-DIT----RRTTFDSI-SRWLDE 113 (222)
Q Consensus 70 ~D~~G~~~--------~~~---------------------~~~~~~~-~~d~vi~v~-d~~----~~~s~~~~-~~~~~~ 113 (222)
+||+|... -.. -+...+. .+|+.|+|. |.+ .++.+... .+++.+
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 99999211 111 1334445 788888888 764 12223333 556677
Q ss_pred HHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCC
Q 040481 114 LKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALD 162 (222)
Q Consensus 114 i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (222)
+.. .++|+++|+|+.|-... ...+...++...++++++.+|+.+
T Consensus 176 Lk~---~~kPfiivlN~~dp~~~--et~~l~~~l~eky~vpvl~v~c~~ 219 (492)
T TIGR02836 176 LKE---LNKPFIILLNSTHPYHP--ETEALRQELEEKYDVPVLAMDVES 219 (492)
T ss_pred HHh---cCCCEEEEEECcCCCCc--hhHHHHHHHHHHhCCceEEEEHHH
Confidence 766 45799999999994321 244445566677888877777654
No 310
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.18 E-value=4.5e-10 Score=97.42 Aligned_cols=124 Identities=15% Similarity=0.115 Sum_probs=74.8
Q ss_pred CCCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCC-CccceeEEEEEEEECCeEEEEEEEeCCCcchhh-------h-
Q 040481 10 GGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSK-ATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFR-------A- 80 (222)
Q Consensus 10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~- 80 (222)
..+.+..++|+++|.+|+||||++|+|++........ ...++.........++ ..+.++||||..... .
T Consensus 112 ~~~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeI 189 (763)
T TIGR00993 112 QDPLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKI 189 (763)
T ss_pred ccccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHH
Confidence 3455667899999999999999999999976433222 1222222222223343 567899999954321 1
Q ss_pred --hHHHhhc--CCCEEEEEEECCChhhHHHHHHHHHHHHhcCCC--CCcEEEEEeCCCCCc
Q 040481 81 --VTSAYYR--GAVGALIVYDITRRTTFDSISRWLDELKTHSDT--TVARMLVGNKCDLES 135 (222)
Q Consensus 81 --~~~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~iiv~nK~Dl~~ 135 (222)
....++. .+|+||+|.++........-..+++.+...... -..+|||+|+.|..+
T Consensus 190 Lk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 190 LSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 1222333 479999999886433221222344444443321 135688899999764
No 311
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.18 E-value=9.3e-11 Score=96.32 Aligned_cols=162 Identities=13% Similarity=0.130 Sum_probs=78.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCC-Cc--cceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHH-----hh
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSK-AT--IGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSA-----YY 86 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-----~~ 86 (222)
..++|+|.|.+|+|||||||+|.|........ ++ ..++.......... .-.+.+||.||..-....... .+
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~-~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPK-FPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCC-CCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 45899999999999999999997643322111 11 11111111111111 112679999996443222222 34
Q ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC-------cCCCCCHHH----HHHHHHH----c
Q 040481 87 RGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE-------SIRNVSTEE----GKSLAEA----E 151 (222)
Q Consensus 87 ~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~-------~~~~~~~~~----~~~~~~~----~ 151 (222)
...|.+|++.+-.=.+. . ..+...+.. .+.|+++|-+|.|.. ..+....+. +++.+.. .
T Consensus 113 ~~yD~fiii~s~rf~~n--d-v~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~ 186 (376)
T PF05049_consen 113 YRYDFFIIISSERFTEN--D-VQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA 186 (376)
T ss_dssp GG-SEEEEEESSS--HH--H-HHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred cccCEEEEEeCCCCchh--h-HHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 56788888776432221 1 222333433 457999999999961 112333332 2333322 2
Q ss_pred C---CeEEEEccCCC--CCHHHHHHHHHHHHHHHhhh
Q 040481 152 G---LFFMETSALDS--TNVKSAFEIVIREIYSNVSR 183 (222)
Q Consensus 152 ~---~~~~~~sa~~~--~~i~~~~~~i~~~~~~~~~~ 183 (222)
+ .++|-+|+.+- .+...+.+.|...+-.++..
T Consensus 187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~ 223 (376)
T PF05049_consen 187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRH 223 (376)
T ss_dssp T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHH
T ss_pred CCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHH
Confidence 3 34888998875 44777777777766666553
No 312
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=4.5e-10 Score=96.36 Aligned_cols=119 Identities=22% Similarity=0.307 Sum_probs=86.7
Q ss_pred CCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCc-----------------cceeEEEEEEEE---CCeEEEEEEE
Q 040481 11 GGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKAT-----------------IGVEFQTQSMEI---DGKEVKAQIW 70 (222)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~-----------------~~~~~~~~~~~~---~~~~~~~~i~ 70 (222)
+.+....+|+++|+-.+|||+|+..|.....+..+... .++.....++.+ .++.+-++++
T Consensus 123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil 202 (971)
T KOG0468|consen 123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL 202 (971)
T ss_pred cCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence 45667789999999999999999999776543321111 122222223333 4577889999
Q ss_pred eCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCC
Q 040481 71 DTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDL 133 (222)
Q Consensus 71 D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl 133 (222)
||||+..|.....+.++.+|++++|+|+.++-.+.. + +.+........|+++|+||.|.
T Consensus 203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-E---r~ikhaiq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-E---RIIKHAIQNRLPIVVVINKVDR 261 (971)
T ss_pred cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeH-H---HHHHHHHhccCcEEEEEehhHH
Confidence 999999998888889999999999999999876443 2 2333333456799999999995
No 313
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=4.7e-10 Score=87.89 Aligned_cols=172 Identities=17% Similarity=0.157 Sum_probs=108.3
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcC-------------C-CCCCCccceeEEEEEEEECCeEEEEEEEeCCCcch
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEF-------------N-PHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 77 (222)
...+.++|..+|+-..|||||..+++.--. . .......++++....+.+.....+.-.+|+||+..
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD 87 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD 87 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH
Confidence 445678999999999999999998854211 0 01123346677777777766666677999999999
Q ss_pred hhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEE-EeCCCCCcCCCCC---HHHHHHHHHHcC-
Q 040481 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLV-GNKCDLESIRNVS---TEEGKSLAEAEG- 152 (222)
Q Consensus 78 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv-~nK~Dl~~~~~~~---~~~~~~~~~~~~- 152 (222)
|-.+......+.|+.|+|++++|+.- .+...-+.-....++|.|++ +||+|+.++.++. ..+.+++...++
T Consensus 88 YvKNMItgAaqmDgAILVVsA~dGpm----PqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f 163 (394)
T COG0050 88 YVKNMITGAAQMDGAILVVAATDGPM----PQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF 163 (394)
T ss_pred HHHHHhhhHHhcCccEEEEEcCCCCC----CcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC
Confidence 97777777788999999999998642 11111111222345666655 7999998754432 345666666665
Q ss_pred ----CeEEEEccCC-CCCHHHHHHHHHHHHHHHhhhhccCC
Q 040481 153 ----LFFMETSALD-STNVKSAFEIVIREIYSNVSRKVLNS 188 (222)
Q Consensus 153 ----~~~~~~sa~~-~~~i~~~~~~i~~~~~~~~~~~~~~s 188 (222)
.|++.-||.. .+|-.. ...-+..++......++..
T Consensus 164 ~gd~~Pii~gSal~ale~~~~-~~~~i~eLm~avd~yip~P 203 (394)
T COG0050 164 PGDDTPIIRGSALKALEGDAK-WEAKIEELMDAVDSYIPTP 203 (394)
T ss_pred CCCCcceeechhhhhhcCCcc-hHHHHHHHHHHHHhcCCCC
Confidence 4466666554 233333 2223333444444444443
No 314
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.12 E-value=6.9e-10 Score=90.01 Aligned_cols=103 Identities=17% Similarity=0.088 Sum_probs=63.2
Q ss_pred EEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCH--
Q 040481 64 EVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVST-- 141 (222)
Q Consensus 64 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~-- 141 (222)
++.+.|+||+|..... ......+|.++++.....+.. +......+ .++|.++|+||+|+........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~e---l~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGDD---LQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccHH---HHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence 4677899999964322 134566788888855443332 22222222 2357799999999874322110
Q ss_pred HH----HHHHHH---HcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 040481 142 EE----GKSLAE---AEGLFFMETSALDSTNVKSAFEIVIREI 177 (222)
Q Consensus 142 ~~----~~~~~~---~~~~~~~~~sa~~~~~i~~~~~~i~~~~ 177 (222)
.. ...+.. .+..+++++||+++.|++++++++.+..
T Consensus 195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 00 011111 1234699999999999999999988863
No 315
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=4.5e-10 Score=99.35 Aligned_cols=118 Identities=21% Similarity=0.228 Sum_probs=86.2
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCC-----C-----------CCccceeEEEEEEEECCe-EEEEEEEeCCCc
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPH-----S-----------KATIGVEFQTQSMEIDGK-EVKAQIWDTAGQ 75 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~ 75 (222)
....-+|.|+|+..+|||||..+|+....... . ....++++....+.+... .+.++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 55667999999999999999999965332111 1 011244455555444444 488999999999
Q ss_pred chhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040481 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134 (222)
Q Consensus 76 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~ 134 (222)
-.|-......++-+|++++|+|+.++-.-..-.-| ++....++|.++++||+|-.
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~----rqa~~~~vp~i~fiNKmDR~ 141 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVW----RQADKYGVPRILFVNKMDRL 141 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHH----HHHhhcCCCeEEEEECcccc
Confidence 99998888889999999999999988553333334 33444668999999999963
No 316
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.10 E-value=1.8e-09 Score=86.50 Aligned_cols=142 Identities=18% Similarity=0.225 Sum_probs=74.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCCC----------CCccceeEEEEEEEECCeEEEEEEEeCCCcch-------
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHS----------KATIGVEFQTQSMEIDGKEVKAQIWDTAGQER------- 77 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------- 77 (222)
..++|+|+|.+|+|||||||.|++....... ..+..+......+.-++..+.+.++||||...
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 4689999999999999999999987653331 12222333333444477888999999999221
Q ss_pred -----------hhhhHH---------HhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCC
Q 040481 78 -----------FRAVTS---------AYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIR 137 (222)
Q Consensus 78 -----------~~~~~~---------~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~ 137 (222)
+..... ..=.++|+++|+++.+... +.. ..+..|+... ..+++|=|+.|+|.....
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~--~Di~~mk~Ls-~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKP--LDIEFMKRLS-KRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-H--HHHHHHHHHT-TTSEEEEEESTGGGS-HH
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chH--HHHHHHHHhc-ccccEEeEEecccccCHH
Confidence 111100 0114468999999986532 111 1222333333 336788899999974321
Q ss_pred C--CCHHHHHHHHHHcCCeEEEEcc
Q 040481 138 N--VSTEEGKSLAEAEGLFFMETSA 160 (222)
Q Consensus 138 ~--~~~~~~~~~~~~~~~~~~~~sa 160 (222)
+ ...+.+..-....++.++....
T Consensus 159 el~~~k~~i~~~l~~~~I~~f~f~~ 183 (281)
T PF00735_consen 159 ELQAFKQRIREDLEENNIKIFDFPE 183 (281)
T ss_dssp HHHHHHHHHHHHHHHTT--S-----
T ss_pred HHHHHHHHHHHHHHHcCceeecccc
Confidence 1 1123344445567777665443
No 317
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.07 E-value=1.6e-08 Score=82.24 Aligned_cols=129 Identities=18% Similarity=0.244 Sum_probs=85.8
Q ss_pred eEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhh-------HHHHH---HHHHHHHhcCC-C
Q 040481 52 EFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTT-------FDSIS---RWLDELKTHSD-T 120 (222)
Q Consensus 52 ~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s-------~~~~~---~~~~~i~~~~~-~ 120 (222)
.+....+.+.+ ..+.++|++|+.....-|.+.+..+++||||+++++... -..+. +++..+-.... .
T Consensus 184 GI~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~ 261 (354)
T KOG0082|consen 184 GIVEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFA 261 (354)
T ss_pred CeeEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccc
Confidence 34444444444 667899999999999999999999999999999987532 12222 23333333332 5
Q ss_pred CCcEEEEEeCCCCCcC--------------CC-CCHHHHHHHHHHc----------CCeEEEEccCCCCCHHHHHHHHHH
Q 040481 121 TVARMLVGNKCDLESI--------------RN-VSTEEGKSLAEAE----------GLFFMETSALDSTNVKSAFEIVIR 175 (222)
Q Consensus 121 ~~p~iiv~nK~Dl~~~--------------~~-~~~~~~~~~~~~~----------~~~~~~~sa~~~~~i~~~~~~i~~ 175 (222)
..++|+++||.||-++ .. -..+++..+.... .+.+..+.|.+..+|+.+|....+
T Consensus 262 ~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d 341 (354)
T KOG0082|consen 262 NTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTD 341 (354)
T ss_pred cCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHH
Confidence 6899999999998211 11 2333443333221 233556789999999999998888
Q ss_pred HHHHHhh
Q 040481 176 EIYSNVS 182 (222)
Q Consensus 176 ~~~~~~~ 182 (222)
.+.....
T Consensus 342 ~Ii~~nl 348 (354)
T KOG0082|consen 342 TIIQNNL 348 (354)
T ss_pred HHHHHHH
Confidence 7776543
No 318
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.06 E-value=3.1e-09 Score=83.00 Aligned_cols=68 Identities=13% Similarity=0.104 Sum_probs=43.2
Q ss_pred EEEEEEeCCCcch-------------hhhhHHHhhc-CCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeC
Q 040481 65 VKAQIWDTAGQER-------------FRAVTSAYYR-GAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNK 130 (222)
Q Consensus 65 ~~~~i~D~~G~~~-------------~~~~~~~~~~-~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK 130 (222)
..|.++|+||... ...+...+++ ..+++++|+|+.....-....++.+.+ .+.+.|+++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l---d~~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV---DPQGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH---HHcCCcEEEEEEC
Confidence 4578999999531 1234556777 456899999986543222222222333 3356799999999
Q ss_pred CCCCc
Q 040481 131 CDLES 135 (222)
Q Consensus 131 ~Dl~~ 135 (222)
.|..+
T Consensus 202 ~D~~~ 206 (240)
T smart00053 202 LDLMD 206 (240)
T ss_pred CCCCC
Confidence 99864
No 319
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.00 E-value=4.3e-10 Score=89.53 Aligned_cols=55 Identities=18% Similarity=0.158 Sum_probs=39.7
Q ss_pred CcEEEEEeCCCCCcCCCCCHHHHHHHHHH--cCCeEEEEccCCCCCHHHHHHHHHHH
Q 040481 122 VARMLVGNKCDLESIRNVSTEEGKSLAEA--EGLFFMETSALDSTNVKSAFEIVIRE 176 (222)
Q Consensus 122 ~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~sa~~~~~i~~~~~~i~~~ 176 (222)
.+-++|+||+|+.+......+...+.... .+++++++||++|+|++++++||..+
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 45599999999975322233333333433 35789999999999999999998764
No 320
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=6.7e-09 Score=83.91 Aligned_cols=126 Identities=17% Similarity=0.185 Sum_probs=87.2
Q ss_pred CCCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCC-CccceeEEEEEEEECCeE------------------------
Q 040481 10 GGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSK-ATIGVEFQTQSMEIDGKE------------------------ 64 (222)
Q Consensus 10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------------------------ 64 (222)
....+..+-|+++|+-..||||||+.|+...++..+. |..++++.+..+..+.++
T Consensus 52 d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~a 131 (532)
T KOG1954|consen 52 DPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNA 131 (532)
T ss_pred CcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHH
Confidence 3456667889999999999999999999999887655 555556666555443221
Q ss_pred ---------------EEEEEEeCCCcc-----------hhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcC
Q 040481 65 ---------------VKAQIWDTAGQE-----------RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHS 118 (222)
Q Consensus 65 ---------------~~~~i~D~~G~~-----------~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~ 118 (222)
-.+.++||||.- .|.....=|..++|.+|++||+...+--++..+.+..++.
T Consensus 132 flnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG-- 209 (532)
T KOG1954|consen 132 FLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG-- 209 (532)
T ss_pred HHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC--
Confidence 146799999931 1334455678899999999999765543333444444433
Q ss_pred CCCCcEEEEEeCCCCCcCCC
Q 040481 119 DTTVARMLVGNKCDLESIRN 138 (222)
Q Consensus 119 ~~~~p~iiv~nK~Dl~~~~~ 138 (222)
..-.+-||.||.|.++..+
T Consensus 210 -~EdkiRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 210 -HEDKIRVVLNKADQVDTQQ 228 (532)
T ss_pred -CcceeEEEeccccccCHHH
Confidence 3345679999999876444
No 321
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=8.2e-09 Score=85.05 Aligned_cols=131 Identities=19% Similarity=0.223 Sum_probs=91.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc--CcCCC--------CC----------CCccceeEEEEEEEECCeEEEEEEEeCCCcch
Q 040481 18 KIVIIGDSAVGKSNLLSRYAR--NEFNP--------HS----------KATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~--~~~~~--------~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 77 (222)
..+|+-+|.+|||||-..|+- +.+.. .. ....|+.+....+.++..+..+++.|||||+.
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeD 93 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHED 93 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccc
Confidence 568899999999999988842 11100 00 11135666666666776778899999999999
Q ss_pred hhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCe
Q 040481 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLF 154 (222)
Q Consensus 78 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 154 (222)
|..-+-..+..+|..+.|+|+..+-. .+-++.++-....++|++-.+||.|-... -+.+...+....+++.
T Consensus 94 FSEDTYRtLtAvDsAvMVIDaAKGiE----~qT~KLfeVcrlR~iPI~TFiNKlDR~~r--dP~ELLdEiE~~L~i~ 164 (528)
T COG4108 94 FSEDTYRTLTAVDSAVMVIDAAKGIE----PQTLKLFEVCRLRDIPIFTFINKLDREGR--DPLELLDEIEEELGIQ 164 (528)
T ss_pred cchhHHHHHHhhheeeEEEecccCcc----HHHHHHHHHHhhcCCceEEEeeccccccC--ChHHHHHHHHHHhCcc
Confidence 98888888899999999999987743 23333333334477999999999996543 3344555555555544
No 322
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.97 E-value=5.8e-10 Score=86.60 Aligned_cols=150 Identities=21% Similarity=0.181 Sum_probs=86.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcC-----------CCCCCCcc---------------ceeEEEEEEEECC------
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEF-----------NPHSKATI---------------GVEFQTQSMEIDG------ 62 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~-----------~~~~~~~~---------------~~~~~~~~~~~~~------ 62 (222)
+.+.|.|-|+||+|||||+++|...-. ++.++.+- ....+...+--.+
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 457999999999999999999844211 11111110 1123333332222
Q ss_pred ------------eEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeC
Q 040481 63 ------------KEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNK 130 (222)
Q Consensus 63 ------------~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK 130 (222)
-++.+.|++|.|-.+.... ...-+|.+++|....-++..+.+..-+-++ +=++|+||
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~---I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------aDi~vVNK 176 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEVD---IADMADTVVLVLVPGLGDEIQAIKAGIMEI--------ADIFVVNK 176 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHHH---HHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE-
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHHH---HHHhcCeEEEEecCCCccHHHHHhhhhhhh--------ccEEEEeC
Confidence 2356778888885554432 356689999999998877655555444444 22899999
Q ss_pred CCCCcCCCCCHHHHHHHHH-------HcCCeEEEEccCCCCCHHHHHHHHHHH
Q 040481 131 CDLESIRNVSTEEGKSLAE-------AEGLFFMETSALDSTNVKSAFEIVIRE 176 (222)
Q Consensus 131 ~Dl~~~~~~~~~~~~~~~~-------~~~~~~~~~sa~~~~~i~~~~~~i~~~ 176 (222)
.|....+... .+.+.... .+..+++.+||.++.|++++++.|.++
T Consensus 177 aD~~gA~~~~-~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 177 ADRPGADRTV-RDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp -SHHHHHHHH-HHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred CChHHHHHHH-HHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 9964322111 11121111 134679999999999999999877764
No 323
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.95 E-value=1.2e-08 Score=80.55 Aligned_cols=154 Identities=21% Similarity=0.147 Sum_probs=95.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcC-----------CCCCCCccc---------------eeEEEEEEEE--------
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEF-----------NPHSKATIG---------------VEFQTQSMEI-------- 60 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~-----------~~~~~~~~~---------------~~~~~~~~~~-------- 60 (222)
+...|.|-|.||+|||||+..|...-. ++.++.+-| ...++..+.-
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS 129 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS 129 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence 346899999999999999999844211 222222210 1112211111
Q ss_pred ----------CCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeC
Q 040481 61 ----------DGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNK 130 (222)
Q Consensus 61 ----------~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK 130 (222)
+.-++.+.|++|.|-.+.+.. ....+|.+++|.=..-+...+.+..-+-++-. ++|+||
T Consensus 130 ~at~~~i~~ldAaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD--------i~vINK 198 (323)
T COG1703 130 RATREAIKLLDAAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKAGIMEIAD--------IIVINK 198 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHhhhhhhhh--------eeeEec
Confidence 113467789999987665543 35568999999888877776666555544433 899999
Q ss_pred CCCCcCCCCCHHH--HHHHH------HHcCCeEEEEccCCCCCHHHHHHHHHHHHHH
Q 040481 131 CDLESIRNVSTEE--GKSLA------EAEGLFFMETSALDSTNVKSAFEIVIREIYS 179 (222)
Q Consensus 131 ~Dl~~~~~~~~~~--~~~~~------~~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~ 179 (222)
.|......--.+. +..+. ..+..+++.++|.+|+|++++++.+.++...
T Consensus 199 aD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~ 255 (323)
T COG1703 199 ADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF 255 (323)
T ss_pred cChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence 9954311111110 11111 1234679999999999999999987775443
No 324
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.94 E-value=8.9e-09 Score=78.04 Aligned_cols=96 Identities=19% Similarity=0.090 Sum_probs=66.5
Q ss_pred chhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHH-----HH
Q 040481 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLA-----EA 150 (222)
Q Consensus 76 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~ 150 (222)
..+...+..+++.+|++++|+|+.+... .|...+... ..+.|+++|+||+|+.... ...+....+. ..
T Consensus 22 ~~~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~-~~~~~~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~ 94 (190)
T cd01855 22 DFILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF-GGNNPVILVGNKIDLLPKD-KNLVRIKNWLRAKAAAG 94 (190)
T ss_pred HHHHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh-cCCCcEEEEEEchhcCCCC-CCHHHHHHHHHHHHHhh
Confidence 3357788889999999999999987642 122222222 2457999999999996532 2333333333 22
Q ss_pred cCC---eEEEEccCCCCCHHHHHHHHHHHHH
Q 040481 151 EGL---FFMETSALDSTNVKSAFEIVIREIY 178 (222)
Q Consensus 151 ~~~---~~~~~sa~~~~~i~~~~~~i~~~~~ 178 (222)
.+. .++++||+++.|++++++.+.+.+.
T Consensus 95 ~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 95 LGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred cCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 333 5899999999999999998887653
No 325
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.91 E-value=4.5e-09 Score=77.09 Aligned_cols=94 Identities=19% Similarity=0.112 Sum_probs=63.6
Q ss_pred hhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEE
Q 040481 79 RAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMET 158 (222)
Q Consensus 79 ~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (222)
..+..+.++.+|++|+|+|+.++..... ..+...+. ..+.|+++|+||+|+.+.... .....+....+.+++.+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~i 76 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVYV 76 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEEE
Confidence 4566778888999999999987643221 12222222 235799999999998532111 11112334456789999
Q ss_pred ccCCCCCHHHHHHHHHHHHH
Q 040481 159 SALDSTNVKSAFEIVIREIY 178 (222)
Q Consensus 159 sa~~~~~i~~~~~~i~~~~~ 178 (222)
||+++.|++++++.+.+.+.
T Consensus 77 Sa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 77 SAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EccccccHHHHHHHHHHHHh
Confidence 99999999999998877653
No 326
>PRK12289 GTPase RsgA; Reviewed
Probab=98.88 E-value=1.9e-08 Score=82.95 Aligned_cols=91 Identities=18% Similarity=0.139 Sum_probs=67.3
Q ss_pred hHHHhhcCCCEEEEEEECCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEc
Q 040481 81 VTSAYYRGAVGALIVYDITRRT-TFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETS 159 (222)
Q Consensus 81 ~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s 159 (222)
+.+..+.++|.+++|+|+.++. ....+..|+..+.. .++|+++|+||+||...... +........+++.++.+|
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~iS 156 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFIS 156 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEEE
Confidence 3344589999999999998875 45566777776643 45899999999999642221 122233346788999999
Q ss_pred cCCCCCHHHHHHHHHHH
Q 040481 160 ALDSTNVKSAFEIVIRE 176 (222)
Q Consensus 160 a~~~~~i~~~~~~i~~~ 176 (222)
|.++.|+++++..+...
T Consensus 157 A~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 157 VETGIGLEALLEQLRNK 173 (352)
T ss_pred cCCCCCHHHHhhhhccc
Confidence 99999999999887654
No 327
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.88 E-value=4.4e-09 Score=83.59 Aligned_cols=155 Identities=21% Similarity=0.178 Sum_probs=96.8
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCc---------chhhhhHHH
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ---------ERFRAVTSA 84 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~---------~~~~~~~~~ 84 (222)
....-|.++|-.++|||||+++|++-...+...-..+.+........... ..+.+.||.|- ..|.. +..
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~A-TLe 253 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQA-TLE 253 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC-cEEEEeechhhhhhCcHHHHHHHHH-HHH
Confidence 34568999999999999999999965554433333333333333434332 23568899982 22333 334
Q ss_pred hhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEE----EEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEcc
Q 040481 85 YYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARM----LVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSA 160 (222)
Q Consensus 85 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i----iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (222)
....+|.++-|.|++++.--......+..+....-...|.+ =|=||.|...... . ...++ -+.+||
T Consensus 254 eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~-e-------~E~n~--~v~isa 323 (410)
T KOG0410|consen 254 EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV-E-------EEKNL--DVGISA 323 (410)
T ss_pred HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccC-c-------cccCC--cccccc
Confidence 46789999999999999754444555555555443333433 3457777653211 1 11122 577899
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 040481 161 LDSTNVKSAFEIVIREIYSN 180 (222)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~~ 180 (222)
.+|.|++++.+.+-.++...
T Consensus 324 ltgdgl~el~~a~~~kv~~~ 343 (410)
T KOG0410|consen 324 LTGDGLEELLKAEETKVASE 343 (410)
T ss_pred ccCccHHHHHHHHHHHhhhh
Confidence 99999999988666655543
No 328
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.85 E-value=1.7e-08 Score=81.39 Aligned_cols=88 Identities=17% Similarity=0.092 Sum_probs=68.4
Q ss_pred HHhhcCCCEEEEEEECCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccC
Q 040481 83 SAYYRGAVGALIVYDITRRT-TFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSAL 161 (222)
Q Consensus 83 ~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (222)
...+.++|.+++|+|+.++. ++..+.+|+..+.. .++|+++|+||+||.+.. .......+....+.+++.+||+
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA~ 147 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSAK 147 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEECC
Confidence 44588999999999999988 88888888887765 357999999999996531 1112233345578899999999
Q ss_pred CCCCHHHHHHHHHH
Q 040481 162 DSTNVKSAFEIVIR 175 (222)
Q Consensus 162 ~~~~i~~~~~~i~~ 175 (222)
++.|+++++..+..
T Consensus 148 ~g~gi~~L~~~L~~ 161 (287)
T cd01854 148 TGEGLDELREYLKG 161 (287)
T ss_pred CCccHHHHHhhhcc
Confidence 99999999887654
No 329
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.84 E-value=1.2e-07 Score=76.90 Aligned_cols=139 Identities=17% Similarity=0.226 Sum_probs=84.6
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCC----------CCCccceeEEEEEEEECCeEEEEEEEeCCCcchh-----
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPH----------SKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERF----- 78 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----- 78 (222)
...++|+++|++|.|||||+|.|++...... ..+++.+......+.-++..+.+.++||||-..+
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 4468999999999999999999988743222 1233344455555555777888999999993221
Q ss_pred ---------hhhHHHhh--------------cCCCEEEEEEECCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040481 79 ---------RAVTSAYY--------------RGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDLE 134 (222)
Q Consensus 79 ---------~~~~~~~~--------------~~~d~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~ 134 (222)
......++ .++++++|.+..+... +..+ .+.+..+... +-+|=|+.|+|.-
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~DIe~Mk~ls~~----vNlIPVI~KaD~l 175 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPLDIEAMKRLSKR----VNLIPVIAKADTL 175 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHHHHHHHHHHhcc----cCeeeeeeccccC
Confidence 11111111 3467899998875432 1222 2233333322 3456678999974
Q ss_pred cC--CCCCHHHHHHHHHHcCCeEEE
Q 040481 135 SI--RNVSTEEGKSLAEAEGLFFME 157 (222)
Q Consensus 135 ~~--~~~~~~~~~~~~~~~~~~~~~ 157 (222)
-. ...-.+.+.+....+++++|.
T Consensus 176 T~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 176 TDDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred CHHHHHHHHHHHHHHHHHhCCceeC
Confidence 22 222234556667778898885
No 330
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=3.2e-08 Score=75.74 Aligned_cols=164 Identities=18% Similarity=0.210 Sum_probs=98.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhh---hHHHhhcCCCEE
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRA---VTSAYYRGAVGA 92 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~v 92 (222)
.++|+++|...+|||++-+.......+.+...-..+. ....-.+.+.-+.+.+||.||+..+.. -....++.+-++
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTs-ki~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL 105 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTS-KITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL 105 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccC-cccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence 3679999999999999988776654333211100000 000111223456789999999765421 245678999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcC--CCCCcEEEEEeCCCCC-cCCCCCHHH-H-----HHHHH----HcCCeEEEEc
Q 040481 93 LIVYDITRRTTFDSISRWLDELKTHS--DTTVARMLVGNKCDLE-SIRNVSTEE-G-----KSLAE----AEGLFFMETS 159 (222)
Q Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~Dl~-~~~~~~~~~-~-----~~~~~----~~~~~~~~~s 159 (222)
|||+|+.+.. ++.+..+...+...- +..+.+=+.+.|.|.. ++..+..+. + .++++ ...+.|.-+|
T Consensus 106 ifvIDaQddy-~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS 184 (347)
T KOG3887|consen 106 IFVIDAQDDY-MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS 184 (347)
T ss_pred EEEEechHHH-HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence 9999997753 233333333333322 2557777889999964 322222110 1 11111 1235577788
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhh
Q 040481 160 ALDSTNVKSAFEIVIREIYSNVS 182 (222)
Q Consensus 160 a~~~~~i~~~~~~i~~~~~~~~~ 182 (222)
..+.. |-+.|.++++++..+.+
T Consensus 185 IyDHS-IfEAFSkvVQkLipqLp 206 (347)
T KOG3887|consen 185 IYDHS-IFEAFSKVVQKLIPQLP 206 (347)
T ss_pred ecchH-HHHHHHHHHHHHhhhch
Confidence 88754 99999999998887755
No 331
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.82 E-value=2.6e-07 Score=71.28 Aligned_cols=90 Identities=23% Similarity=0.189 Sum_probs=65.5
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchh-------hhhHHH
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERF-------RAVTSA 84 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~ 84 (222)
.+...-+|+++|-|.+|||||+..++.-.........++.+.....+.+++.. +++.|.||.-+- .....+
T Consensus 58 ~KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~--IQllDLPGIieGAsqgkGRGRQvia 135 (364)
T KOG1486|consen 58 LKSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGAN--IQLLDLPGIIEGASQGKGRGRQVIA 135 (364)
T ss_pred eccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCce--EEEecCcccccccccCCCCCceEEE
Confidence 44556799999999999999999997755444434444667777777788766 459999995332 122334
Q ss_pred hhcCCCEEEEEEECCChhh
Q 040481 85 YYRGAVGALIVYDITRRTT 103 (222)
Q Consensus 85 ~~~~~d~vi~v~d~~~~~s 103 (222)
..+.+|.++.|.|++..+.
T Consensus 136 vArtaDlilMvLDatk~e~ 154 (364)
T KOG1486|consen 136 VARTADLILMVLDATKSED 154 (364)
T ss_pred EeecccEEEEEecCCcchh
Confidence 5678899999999987654
No 332
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.80 E-value=3.4e-07 Score=77.08 Aligned_cols=124 Identities=14% Similarity=0.168 Sum_probs=78.8
Q ss_pred eEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhh----------HHHHHHHHHHHHhcC-CC
Q 040481 52 EFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTT----------FDSISRWLDELKTHS-DT 120 (222)
Q Consensus 52 ~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s----------~~~~~~~~~~i~~~~-~~ 120 (222)
.+....+.++ ....+.++|++|+.....-|..++..+++||||+++++-.. +......+..+.... -.
T Consensus 224 Gi~e~~f~~~-~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~ 302 (389)
T PF00503_consen 224 GITEIDFNFS-GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFK 302 (389)
T ss_dssp SEEEEEEEE--TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGT
T ss_pred CeeEEEEEee-cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccc
Confidence 3444444441 23557799999999999999999999999999999875321 333333444443332 25
Q ss_pred CCcEEEEEeCCCCCc-----CC-------------CCCHHHHHHHHHHc------------CCeEEEEccCCCCCHHHHH
Q 040481 121 TVARMLVGNKCDLES-----IR-------------NVSTEEGKSLAEAE------------GLFFMETSALDSTNVKSAF 170 (222)
Q Consensus 121 ~~p~iiv~nK~Dl~~-----~~-------------~~~~~~~~~~~~~~------------~~~~~~~sa~~~~~i~~~~ 170 (222)
..|++|++||.|+-. .. .-..+.+..+.... .+.+..++|.+..++..+|
T Consensus 303 ~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~ 382 (389)
T PF00503_consen 303 NTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVF 382 (389)
T ss_dssp TSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHH
T ss_pred cCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHH
Confidence 789999999999611 00 02334444444321 1235578888888888888
Q ss_pred HHHHHH
Q 040481 171 EIVIRE 176 (222)
Q Consensus 171 ~~i~~~ 176 (222)
..+.+.
T Consensus 383 ~~v~~~ 388 (389)
T PF00503_consen 383 NAVKDI 388 (389)
T ss_dssp HHHHHH
T ss_pred HHhcCc
Confidence 876653
No 333
>PRK12288 GTPase RsgA; Reviewed
Probab=98.78 E-value=5.4e-08 Score=80.21 Aligned_cols=88 Identities=16% Similarity=0.126 Sum_probs=67.7
Q ss_pred hcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC-CHHHHHHHHHHcCCeEEEEccCCCC
Q 040481 86 YRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNV-STEEGKSLAEAEGLFFMETSALDST 164 (222)
Q Consensus 86 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (222)
..++|.+++|+++....++..+..|+..+.. .++|++||+||+||.+.... ............+++++++||+++.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 4678999999999988899999999876643 45799999999999653221 1122233345678899999999999
Q ss_pred CHHHHHHHHHHH
Q 040481 165 NVKSAFEIVIRE 176 (222)
Q Consensus 165 ~i~~~~~~i~~~ 176 (222)
|+++++..+...
T Consensus 195 GideL~~~L~~k 206 (347)
T PRK12288 195 GLEELEAALTGR 206 (347)
T ss_pred CHHHHHHHHhhC
Confidence 999999887653
No 334
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=1.8e-07 Score=76.31 Aligned_cols=162 Identities=15% Similarity=0.213 Sum_probs=92.9
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCC-------CC--CccceeEEEEEEEECCeEEEEEEEeCCCcchh------
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPH-------SK--ATIGVEFQTQSMEIDGKEVKAQIWDTAGQERF------ 78 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~-------~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------ 78 (222)
...+.++++|++|.|||||+|.|+...+... .. .+..+......+.-++..+.+.++||||-...
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~ 98 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC 98 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence 3468999999999999999999988754332 11 12233333334444677888999999992211
Q ss_pred --------hhhHH-----------Hhhc--CCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCC
Q 040481 79 --------RAVTS-----------AYYR--GAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIR 137 (222)
Q Consensus 79 --------~~~~~-----------~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~ 137 (222)
+.... ..+. ++++.+|.+..+... +..+ .+..++... ..+.+|=|+.|+|.....
T Consensus 99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~--Di~~Mk~l~-~~vNiIPVI~KaD~lT~~ 174 (366)
T KOG2655|consen 99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPL--DIEFMKKLS-KKVNLIPVIAKADTLTKD 174 (366)
T ss_pred chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHh--hHHHHHHHh-ccccccceeeccccCCHH
Confidence 11111 1122 678999999975431 1111 122222222 335667788999974322
Q ss_pred --CCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHHHHhh
Q 040481 138 --NVSTEEGKSLAEAEGLFFMETSALDSTNVKSAFEIVIREIYSNVS 182 (222)
Q Consensus 138 --~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~~~ 182 (222)
..-...+.+-....+++++....... ++.+....+.+....+
T Consensus 175 El~~~K~~I~~~i~~~nI~vf~fp~~~~---d~~~~~~~~~l~~~~P 218 (366)
T KOG2655|consen 175 ELNQFKKRIRQDIEEHNIKVFDFPTDES---DEELKEEEQDLKSSIP 218 (366)
T ss_pred HHHHHHHHHHHHHHHcCcceecCCCCcc---hhhhHHHHHHHhhcCC
Confidence 22233455666777888776665544 4444444444554433
No 335
>PRK00098 GTPase RsgA; Reviewed
Probab=98.77 E-value=3.7e-08 Score=79.81 Aligned_cols=87 Identities=18% Similarity=0.158 Sum_probs=65.0
Q ss_pred hhcCCCEEEEEEECCChhhHHH-HHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCC
Q 040481 85 YYRGAVGALIVYDITRRTTFDS-ISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDS 163 (222)
Q Consensus 85 ~~~~~d~vi~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (222)
...++|++++|+|+.++.++.. +.+|+..+.. .++|+++|+||+|+.+... ............+.+++++||+++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4689999999999988876444 4777776654 4579999999999963221 122334455667889999999999
Q ss_pred CCHHHHHHHHHH
Q 040481 164 TNVKSAFEIVIR 175 (222)
Q Consensus 164 ~~i~~~~~~i~~ 175 (222)
.|+++++..+..
T Consensus 153 ~gi~~L~~~l~g 164 (298)
T PRK00098 153 EGLDELKPLLAG 164 (298)
T ss_pred ccHHHHHhhccC
Confidence 999999887643
No 336
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.75 E-value=1.4e-07 Score=76.86 Aligned_cols=156 Identities=15% Similarity=0.102 Sum_probs=97.9
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCC--------------CccceeEEEEEEEECC---------------
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSK--------------ATIGVEFQTQSMEIDG--------------- 62 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~--------------- 62 (222)
..+..+.|.++|+-..|||||+-+|..+..+...- ...+.++....+-+++
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 34566899999999999999998887665433211 1112233333333322
Q ss_pred ------eEEEEEEEeCCCcchhhhhHH--HhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040481 63 ------KEVKAQIWDTAGQERFRAVTS--AYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134 (222)
Q Consensus 63 ------~~~~~~i~D~~G~~~~~~~~~--~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~ 134 (222)
...-+.|+|+.|++.|...+. .+-...|-.++++.++++-+--. .+ -+--....++|+|++.||+|+.
T Consensus 193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kE---HLgi~~a~~lPviVvvTK~D~~ 268 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KE---HLGIALAMELPVIVVVTKIDMV 268 (527)
T ss_pred hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hH---hhhhhhhhcCCEEEEEEecccC
Confidence 112467999999999875533 34477899999999999865221 11 1122223668999999999997
Q ss_pred cCCCCCH--HHHH----------------------HHHHHc---CCeEEEEccCCCCCHHHHHH
Q 040481 135 SIRNVST--EEGK----------------------SLAEAE---GLFFMETSALDSTNVKSAFE 171 (222)
Q Consensus 135 ~~~~~~~--~~~~----------------------~~~~~~---~~~~~~~sa~~~~~i~~~~~ 171 (222)
+++.+.. +++. ..+.+. -+|+|.+|+.+|+|++-+.+
T Consensus 269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e 332 (527)
T COG5258 269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDE 332 (527)
T ss_pred cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHH
Confidence 5432211 1111 111122 25789999999999886544
No 337
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.73 E-value=3.1e-08 Score=71.48 Aligned_cols=54 Identities=24% Similarity=0.278 Sum_probs=38.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 75 (222)
+++++|.+|+|||||+|+|.+........ ..+.+.....+.+++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSA-TPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCcccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999877543222 223344444555544 3679999995
No 338
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.70 E-value=2.2e-07 Score=87.92 Aligned_cols=112 Identities=22% Similarity=0.267 Sum_probs=69.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcCCCCC------CCccceeEEEEEEEECCeEEEEEEEeCCCc----c----hhhhhHHH
Q 040481 19 IVIIGDSAVGKSNLLSRYARNEFNPHS------KATIGVEFQTQSMEIDGKEVKAQIWDTAGQ----E----RFRAVTSA 84 (222)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----~----~~~~~~~~ 84 (222)
-+|+|++|+|||||+..- +..++... ....+.+.... +.+.+ ...++|++|. + .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~-wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCD-WWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccc-eEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence 489999999999999875 44432211 11111111111 11222 2449999992 1 12233554
Q ss_pred hh---------cCCCEEEEEEECCChhh---------HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040481 85 YY---------RGAVGALIVYDITRRTT---------FDSISRWLDELKTHSDTTVARMLVGNKCDLES 135 (222)
Q Consensus 85 ~~---------~~~d~vi~v~d~~~~~s---------~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 135 (222)
++ +..|+||+++|+.+.-. -..+...+.++.......+||+|++||+|+..
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 44 45799999999976421 12334456677777778899999999999864
No 339
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.66 E-value=1.3e-07 Score=77.89 Aligned_cols=83 Identities=17% Similarity=0.037 Sum_probs=60.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcC-CCCCCCccceeEEEEEEEECCe---------------EEEEEEEeCCCcch---
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEF-NPHSKATIGVEFQTQSMEIDGK---------------EVKAQIWDTAGQER--- 77 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~--- 77 (222)
+++.|+|.|++|||||+++|++... .....|.++.+-....+.+.+. ...+.+.|+||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 6899999999999999999999876 4444455555555555555442 23578999999432
Q ss_pred ----hhhhHHHhhcCCCEEEEEEECC
Q 040481 78 ----FRAVTSAYYRGAVGALIVYDIT 99 (222)
Q Consensus 78 ----~~~~~~~~~~~~d~vi~v~d~~ 99 (222)
........++.+|+++.|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2234556789999999999984
No 340
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.66 E-value=8.9e-08 Score=70.30 Aligned_cols=56 Identities=18% Similarity=0.201 Sum_probs=37.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCC
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 74 (222)
..++|+++|.+|+|||||+|+|.+........ ..+++.....+..+. .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~-~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAP-IPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCC-CCCeeEeEEEEEcCC---CEEEEECcC
Confidence 35789999999999999999999865433222 123333333333332 256999998
No 341
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.65 E-value=8.5e-08 Score=71.44 Aligned_cols=57 Identities=28% Similarity=0.405 Sum_probs=39.7
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCC
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 74 (222)
...++++++|.|++|||||+|+|.+....... +..+++.....+.++. .+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~-~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVG-ATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceec-CCCCeEcceEEEEeCC---CEEEEECcC
Confidence 34589999999999999999999987653322 2223444444444432 467999998
No 342
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.65 E-value=1.9e-07 Score=77.71 Aligned_cols=95 Identities=22% Similarity=0.236 Sum_probs=68.4
Q ss_pred cchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHH----HHHHH
Q 040481 75 QERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGK----SLAEA 150 (222)
Q Consensus 75 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~----~~~~~ 150 (222)
.+.+..+...+++.++++++|+|+.+.. ..|...+.+.. ...|+++|+||+|+.+ .....+... +++..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-~~~piilV~NK~DLl~-k~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-GGNPVLLVGNKIDLLP-KSVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-CCCCEEEEEEchhhCC-CCCCHHHHHHHHHHHHHH
Confidence 4567778888889999999999997654 23444444443 2469999999999965 233333333 34556
Q ss_pred cCC---eEEEEccCCCCCHHHHHHHHHHH
Q 040481 151 EGL---FFMETSALDSTNVKSAFEIVIRE 176 (222)
Q Consensus 151 ~~~---~~~~~sa~~~~~i~~~~~~i~~~ 176 (222)
.++ .++.+||+++.|+++++..+.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 666 48999999999999999987653
No 343
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.61 E-value=2.1e-07 Score=74.64 Aligned_cols=89 Identities=16% Similarity=0.153 Sum_probs=67.5
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECC---------------eEEEEEEEeCCCcc
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDG---------------KEVKAQIWDTAGQE 76 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~D~~G~~ 76 (222)
.....+++.|||.|+||||||+|+|+.........|..+++-....+.+.. ....+++.|++|.-
T Consensus 16 R~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLv 95 (391)
T KOG1491|consen 16 RDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLV 95 (391)
T ss_pred CCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccc
Confidence 334668999999999999999999999988887788888777766666643 23468899999931
Q ss_pred -------hhhhhHHHhhcCCCEEEEEEECCC
Q 040481 77 -------RFRAVTSAYYRGAVGALIVYDITR 100 (222)
Q Consensus 77 -------~~~~~~~~~~~~~d~vi~v~d~~~ 100 (222)
.+.......++.+|+++-|+++.+
T Consensus 96 kGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 96 KGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 122334456788999999988754
No 344
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.61 E-value=1.1e-07 Score=74.32 Aligned_cols=159 Identities=18% Similarity=0.137 Sum_probs=91.8
Q ss_pred CCCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCC-CCccceeEEEEEEEECCeEEEEEEEeCCC----------cchh
Q 040481 10 GGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHS-KATIGVEFQTQSMEIDGKEVKAQIWDTAG----------QERF 78 (222)
Q Consensus 10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~ 78 (222)
.-+++..++++++|.+++|||+|++.+......... .+..+.......+.+ ...+.++|.|| ...+
T Consensus 130 D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v---~~~~~~vDlPG~~~a~y~~~~~~d~ 206 (320)
T KOG2486|consen 130 DCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV---GKSWYEVDLPGYGRAGYGFELPADW 206 (320)
T ss_pred cCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec---cceEEEEecCCcccccCCccCcchH
Confidence 345677799999999999999999999886643322 223333333333333 34567999999 1234
Q ss_pred hhhHHHhhcC---CCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC----CCHHHHHH----H
Q 040481 79 RAVTSAYYRG---AVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRN----VSTEEGKS----L 147 (222)
Q Consensus 79 ~~~~~~~~~~---~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~----~~~~~~~~----~ 147 (222)
..+...++-+ .--+++.+|++.+-. .. ....+.-.....+|..+|+||+|....-. -....+.. +
T Consensus 207 ~~~t~~Y~leR~nLv~~FLLvd~sv~i~--~~--D~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l 282 (320)
T KOG2486|consen 207 DKFTKSYLLERENLVRVFLLVDASVPIQ--PT--DNPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGL 282 (320)
T ss_pred hHhHHHHHHhhhhhheeeeeeeccCCCC--CC--ChHHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhc
Confidence 4444444422 345677888876532 11 11111112235689999999999642100 00111111 1
Q ss_pred HH---HcCCeEEEEccCCCCCHHHHHHHHHH
Q 040481 148 AE---AEGLFFMETSALDSTNVKSAFEIVIR 175 (222)
Q Consensus 148 ~~---~~~~~~~~~sa~~~~~i~~~~~~i~~ 175 (222)
.. .-..+.+-+|+.++.|++.++-.|.+
T Consensus 283 ~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 283 IRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred cccceeccCCceeeecccccCceeeeeehhh
Confidence 11 11244566999999999988654443
No 345
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=1.7e-07 Score=75.18 Aligned_cols=150 Identities=16% Similarity=0.125 Sum_probs=99.1
Q ss_pred CCceeeEEEEEEcCCCCCHHHHHHHHhcCc----------CC---C-CCCCccceeEEEEEEEECCeEEEEEEEeCCCcc
Q 040481 11 GGEEYLFKIVIIGDSAVGKSNLLSRYARNE----------FN---P-HSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76 (222)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~----------~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 76 (222)
....+.++|.-+|+-..|||||-.+++.-. +. . ......|+++....+.+.....+.-=.|+||+.
T Consensus 49 ~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHA 128 (449)
T KOG0460|consen 49 VRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHA 128 (449)
T ss_pred ccCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchH
Confidence 445667899999999999999998884421 10 0 011234667777777777666666678999999
Q ss_pred hhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC---CCHHHHHHHHHHcC-
Q 040481 77 RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRN---VSTEEGKSLAEAEG- 152 (222)
Q Consensus 77 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~---~~~~~~~~~~~~~~- 152 (222)
.|-.+....-.+.|+.|+|+.++|+.- ....+.+-..++..- ..+++.+||.|++++.+ +-+.+++++...++
T Consensus 129 DYIKNMItGaaqMDGaILVVaatDG~M-PQTrEHlLLArQVGV--~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf 205 (449)
T KOG0460|consen 129 DYIKNMITGAAQMDGAILVVAATDGPM-PQTREHLLLARQVGV--KHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGF 205 (449)
T ss_pred HHHHHhhcCccccCceEEEEEcCCCCC-cchHHHHHHHHHcCC--ceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCC
Confidence 997776666788899999999999753 222333333344332 23355589999985443 23345667766664
Q ss_pred ----CeEEEEc---cCCC
Q 040481 153 ----LFFMETS---ALDS 163 (222)
Q Consensus 153 ----~~~~~~s---a~~~ 163 (222)
+|++.=| |..|
T Consensus 206 ~Gd~~PvI~GSAL~ALeg 223 (449)
T KOG0460|consen 206 DGDNTPVIRGSALCALEG 223 (449)
T ss_pred CCCCCCeeecchhhhhcC
Confidence 5676544 5555
No 346
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.61 E-value=1.7e-07 Score=68.75 Aligned_cols=90 Identities=16% Similarity=0.051 Sum_probs=56.6
Q ss_pred hhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCC
Q 040481 85 YYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDST 164 (222)
Q Consensus 85 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (222)
.+..+|++++|+|+.++..- .-..+...+.. ...+.|+++|+||+|+.+.... ......+........+++||+++.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~-~~~~i~~~l~~-~~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~~~ 81 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGT-RCKHVEEYLKK-EKPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINNPF 81 (157)
T ss_pred hhhhCCEEEEEEECCCCccc-cCHHHHHHHHh-ccCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccccc
Confidence 46889999999999887421 11222223322 2345799999999999642211 112222222222335789999999
Q ss_pred CHHHHHHHHHHHH
Q 040481 165 NVKSAFEIVIREI 177 (222)
Q Consensus 165 ~i~~~~~~i~~~~ 177 (222)
|++++++.+.+.+
T Consensus 82 ~~~~L~~~l~~~~ 94 (157)
T cd01858 82 GKGSLIQLLRQFS 94 (157)
T ss_pred cHHHHHHHHHHHH
Confidence 9999988876643
No 347
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.60 E-value=1.1e-06 Score=67.43 Aligned_cols=146 Identities=19% Similarity=0.249 Sum_probs=82.3
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCC---------CCCCccceeEEEEEEEECCeEEEEEEEeCCCcch-------
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNP---------HSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER------- 77 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------- 77 (222)
...++|.+||.+|.|||||+|.|....... ....|+.+......+.-++-.+++.++||||-..
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc 123 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC 123 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence 356899999999999999999997644321 1122223333333344466678889999999221
Q ss_pred -----------hhhh--------HHHhh--cCCCEEEEEEECCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCC-
Q 040481 78 -----------FRAV--------TSAYY--RGAVGALIVYDITRRTTFDSI-SRWLDELKTHSDTTVARMLVGNKCDLE- 134 (222)
Q Consensus 78 -----------~~~~--------~~~~~--~~~d~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~- 134 (222)
|... ....+ .++++++|.+..+- .++..+ .++++.+... +-++=|+.|+|-.
T Consensus 124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~v----vNvvPVIakaDtlT 198 (336)
T KOG1547|consen 124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTEV----VNVVPVIAKADTLT 198 (336)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhhh----heeeeeEeeccccc
Confidence 1111 11122 23567778777753 233333 3344444332 2446667899842
Q ss_pred -cCCCCCHHHHHHHHHHcCCeEEEEccCCCC
Q 040481 135 -SIRNVSTEEGKSLAEAEGLFFMETSALDST 164 (222)
Q Consensus 135 -~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (222)
+++..-.+.+++-...+++.+++-.+.+..
T Consensus 199 leEr~~FkqrI~~el~~~~i~vYPq~~fded 229 (336)
T KOG1547|consen 199 LEERSAFKQRIRKELEKHGIDVYPQDSFDED 229 (336)
T ss_pred HHHHHHHHHHHHHHHHhcCcccccccccccc
Confidence 222222334455556677877776655543
No 348
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=3.5e-08 Score=77.97 Aligned_cols=160 Identities=18% Similarity=0.176 Sum_probs=99.4
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCc---CCCCCCCccceeEEEE--E-EEECC------------------------
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNE---FNPHSKATIGVEFQTQ--S-MEIDG------------------------ 62 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~---~~~~~~~~~~~~~~~~--~-~~~~~------------------------ 62 (222)
.+-+++|.-+|+...||||+++++.+.. |..+...-+++..-+. . +.+++
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 4567899999999999999999987642 1111111111111110 0 00110
Q ss_pred --------eEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCCh----hhHHHHHHHHHHHHhcCCCCCcEEEEEeC
Q 040481 63 --------KEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRR----TTFDSISRWLDELKTHSDTTVARMLVGNK 130 (222)
Q Consensus 63 --------~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~p~iiv~nK 130 (222)
--.++.|+|+||++.+-........-.|++++++..++. ++-+.+ ..++-.. -..++++-||
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHL----aaveiM~--LkhiiilQNK 188 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHL----AAVEIMK--LKHIIILQNK 188 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHH----HHHHHhh--hceEEEEech
Confidence 113577999999998766554444556888888887652 332222 2221111 1366888999
Q ss_pred CCCCcCCC--CCHHHHHHHHHH---cCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 040481 131 CDLESIRN--VSTEEGKSLAEA---EGLFFMETSALDSTNVKSAFEIVIREIY 178 (222)
Q Consensus 131 ~Dl~~~~~--~~~~~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~i~~~~~ 178 (222)
.||..+.+ ...+.+..|... .++|++++||.-..|++-+.++|+.++-
T Consensus 189 iDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 189 IDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred hhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 99975433 223445556554 3688999999999999999998888654
No 349
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.55 E-value=2.3e-07 Score=69.17 Aligned_cols=58 Identities=24% Similarity=0.291 Sum_probs=40.3
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCc
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 75 (222)
...++++++|.+++|||||+++|.+...... ....+++.....+.++ ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 3457999999999999999999998765322 2222334444444443 24679999994
No 350
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.54 E-value=1.8e-07 Score=70.94 Aligned_cols=55 Identities=18% Similarity=0.405 Sum_probs=38.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCC-------CCCCccceeEEEEEEEECCeEEEEEEEeCCC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNP-------HSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 74 (222)
.+++++|.+|+|||||+|+|.+..... ......+++.....+.++. .+.++||||
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 589999999999999999998854311 1122234555555655543 367999998
No 351
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=2.6e-07 Score=80.81 Aligned_cols=117 Identities=21% Similarity=0.266 Sum_probs=80.7
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCC--------------CCCCccceeEEEEEEEECCeEEEEEEEeCCCcch
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNP--------------HSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 77 (222)
+....-+++++.+-..|||||++.|....... +...+.|++.....+..-..++.++++|+|||..
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd 84 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD 84 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence 34455689999999999999999997644211 1123334444444444444667789999999999
Q ss_pred hhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCC
Q 040481 78 FRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCD 132 (222)
Q Consensus 78 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D 132 (222)
|.+......+-+|++++++|+.++-.-.. +..+++.-..+...++|+||+|
T Consensus 85 f~sevssas~l~d~alvlvdvvegv~~qt----~~vlrq~~~~~~~~~lvinkid 135 (887)
T KOG0467|consen 85 FSSEVSSASRLSDGALVLVDVVEGVCSQT----YAVLRQAWIEGLKPILVINKID 135 (887)
T ss_pred hhhhhhhhhhhcCCcEEEEeeccccchhH----HHHHHHHHHccCceEEEEehhh
Confidence 99988888899999999999988754222 2222221123345699999999
No 352
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=2.6e-06 Score=74.03 Aligned_cols=118 Identities=14% Similarity=0.198 Sum_probs=72.7
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCC-Ccccee----------------------------------------
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSK-ATIGVE---------------------------------------- 52 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~---------------------------------------- 52 (222)
+...||++.|..++||||++|+++....-+... +++..-
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 456799999999999999999998766543322 211000
Q ss_pred --EEEEEEEECCeE-----EEEEEEeCCCc---chhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCC
Q 040481 53 --FQTQSMEIDGKE-----VKAQIWDTAGQ---ERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTV 122 (222)
Q Consensus 53 --~~~~~~~~~~~~-----~~~~i~D~~G~---~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 122 (222)
.....+..+... -.+.++|.||. .....-...+...+|++|||.++.+..+..+. +++...... +.
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~vs~~---Kp 262 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHKVSEE---KP 262 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHHhhcc---CC
Confidence 000111111110 13568999994 34555666788999999999999888664432 333333222 33
Q ss_pred cEEEEEeCCCCCc
Q 040481 123 ARMLVGNKCDLES 135 (222)
Q Consensus 123 p~iiv~nK~Dl~~ 135 (222)
-++|+.||.|...
T Consensus 263 niFIlnnkwDasa 275 (749)
T KOG0448|consen 263 NIFILNNKWDASA 275 (749)
T ss_pred cEEEEechhhhhc
Confidence 4566678989864
No 353
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.50 E-value=4.1e-07 Score=66.62 Aligned_cols=56 Identities=23% Similarity=0.286 Sum_probs=38.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCC
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 74 (222)
...+++++|.+++|||||+++|.+.... ...++.+.+.....+..+. .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 3578999999999999999999875532 2233444444433333332 477999998
No 354
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=4e-06 Score=71.65 Aligned_cols=153 Identities=16% Similarity=0.160 Sum_probs=88.9
Q ss_pred CCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCC
Q 040481 11 GGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAV 90 (222)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 90 (222)
....+.+-|+++||||+||||||+.|...-.........| .+ ....++...+.+.++| .....+ ....+-+|
T Consensus 64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G-Pi----TvvsgK~RRiTflEcp--~Dl~~m-iDvaKIaD 135 (1077)
T COG5192 64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG-PI----TVVSGKTRRITFLECP--SDLHQM-IDVAKIAD 135 (1077)
T ss_pred ccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC-ce----EEeecceeEEEEEeCh--HHHHHH-HhHHHhhh
Confidence 3445567889999999999999999876432111111111 11 1245677788999999 333333 23456789
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcE-EEEEeCCCCCcCCCCCHHHH-----HHHHHH-cCCeEEEEccC-C
Q 040481 91 GALIVYDITRRTTFDSISRWLDELKTHSDTTVAR-MLVGNKCDLESIRNVSTEEG-----KSLAEA-EGLFFMETSAL-D 162 (222)
Q Consensus 91 ~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-iiv~nK~Dl~~~~~~~~~~~-----~~~~~~-~~~~~~~~sa~-~ 162 (222)
.|++++|.+-+..++. .++++.+..+. +|. +-|+|+.|+-....-....- +.|..- .|+.+|.+|-. +
T Consensus 136 LVlLlIdgnfGfEMET-mEFLnil~~HG---mPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~n 211 (1077)
T COG5192 136 LVLLLIDGNFGFEMET-MEFLNILISHG---MPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVEN 211 (1077)
T ss_pred eeEEEeccccCceehH-HHHHHHHhhcC---CCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEeccccc
Confidence 9999999998755444 34566665544 344 56689999853221111111 122222 37888888854 3
Q ss_pred CCCHHHHHHHHHH
Q 040481 163 STNVKSAFEIVIR 175 (222)
Q Consensus 163 ~~~i~~~~~~i~~ 175 (222)
|.--+.-+-.+.+
T Consensus 212 GRYpDreilnLsR 224 (1077)
T COG5192 212 GRYPDREILNLSR 224 (1077)
T ss_pred CCCCCHHHHHHHH
Confidence 4433333333444
No 355
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=2.2e-07 Score=76.41 Aligned_cols=115 Identities=21% Similarity=0.263 Sum_probs=90.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcC--------CCCC--------CCccceeEEEEEEEECCeEEEEEEEeCCCcchhhh
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEF--------NPHS--------KATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRA 80 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~--------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 80 (222)
-+|.|+..-.+||||.-.+++.-.. .... ....|+++....++++.+++.++++||||+..|.-
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 4789999999999999988854321 1111 12236778888899999999999999999999988
Q ss_pred hHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040481 81 VTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLES 135 (222)
Q Consensus 81 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 135 (222)
.....++-.|+++.|||++.+-.-..+..| ++..+-++|.++.+||+|...
T Consensus 118 everclrvldgavav~dasagve~qtltvw----rqadk~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 118 EVERCLRVLDGAVAVFDASAGVEAQTLTVW----RQADKFKIPAHCFINKMDKLA 168 (753)
T ss_pred EHHHHHHHhcCeEEEEeccCCcccceeeee----hhccccCCchhhhhhhhhhhh
Confidence 888899999999999999887654444455 455667789999999999753
No 356
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.48 E-value=6.6e-07 Score=72.23 Aligned_cols=58 Identities=28% Similarity=0.401 Sum_probs=41.1
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCC-CCCccceeEEEEEEEECCeEEEEEEEeCCCcc
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPH-SKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 76 (222)
...++++++|.++||||||+|+|.+...... ..+ +++.....+..+. .+.++||||..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~--g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRP--GVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCC--CeEEEEEEEEeCC---cEEEEECCCcC
Confidence 4568999999999999999999998765332 233 3344444454443 36799999953
No 357
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.48 E-value=8.6e-07 Score=64.93 Aligned_cols=84 Identities=15% Similarity=0.024 Sum_probs=54.8
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 040481 90 VGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSA 169 (222)
Q Consensus 90 d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 169 (222)
|++++|+|+.++.+... .++.. ......+.|+++|+||+|+.+...+ .+....+....+..++.+||+++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 78999999988765332 23321 1112245799999999999542211 11122233334566899999999999999
Q ss_pred HHHHHHHH
Q 040481 170 FEIVIREI 177 (222)
Q Consensus 170 ~~~i~~~~ 177 (222)
++.+.+..
T Consensus 77 ~~~i~~~~ 84 (155)
T cd01849 77 ESAFTKQT 84 (155)
T ss_pred HHHHHHHh
Confidence 99887654
No 358
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.47 E-value=5.3e-07 Score=72.38 Aligned_cols=58 Identities=26% Similarity=0.371 Sum_probs=40.4
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCc
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 75 (222)
...++++++|.+|+|||||+|+|.+........ ..+++.....+.++. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~-~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGN-RPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCC-CCCeecceEEEEeCC---CEEEEECCCc
Confidence 345899999999999999999999876433222 223334444555543 3579999996
No 359
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.46 E-value=1.7e-06 Score=70.60 Aligned_cols=143 Identities=17% Similarity=0.172 Sum_probs=79.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCC-------CCC--------------ccceeEEEEEEE-------E------C
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPH-------SKA--------------TIGVEFQTQSME-------I------D 61 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~-------~~~--------------~~~~~~~~~~~~-------~------~ 61 (222)
.-.|+++|++|+||||++..|.+...... .++ ..+..+...... + .
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~ 193 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK 193 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 35788999999999999998854321100 000 011112111000 0 1
Q ss_pred CeEEEEEEEeCCCcchhhhh----HHHh--------hcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEe
Q 040481 62 GKEVKAQIWDTAGQERFRAV----TSAY--------YRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGN 129 (222)
Q Consensus 62 ~~~~~~~i~D~~G~~~~~~~----~~~~--------~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~n 129 (222)
...+.+.++||||....... ...+ -...+.+++|+|++.++ +.+.+. ....... -+.-+|+|
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a-~~f~~~~---~~~giIlT 267 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQA-KAFHEAV---GLTGIILT 267 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHH-HHHHhhC---CCCEEEEE
Confidence 13456889999996432221 1111 12467889999998764 222221 1211111 23478999
Q ss_pred CCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 040481 130 KCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAF 170 (222)
Q Consensus 130 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 170 (222)
|.|.... . -.+...+...++|+..++ +|++++++-
T Consensus 268 KlD~t~~--~--G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 268 KLDGTAK--G--GVVFAIADELGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCCCCC--c--cHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence 9996532 1 234445677799988887 778887763
No 360
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.45 E-value=2e-07 Score=68.09 Aligned_cols=58 Identities=22% Similarity=0.296 Sum_probs=33.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCC------CCCCccceeEEEEEEEECCeEEEEEEEeCCCcchh
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNP------HSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERF 78 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 78 (222)
.++++|++|||||||+|.|.+..... .......++.....+.++... .++||||...+
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~ 100 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSF 100 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT-
T ss_pred EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCcc
Confidence 68999999999999999998864211 111111112223334443333 49999996554
No 361
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.42 E-value=5.1e-07 Score=68.87 Aligned_cols=119 Identities=14% Similarity=0.163 Sum_probs=77.7
Q ss_pred eEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhh----------HHHHHHHHHHHHhcCC-CCCcEEEEEeCC
Q 040481 63 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTT----------FDSISRWLDELKTHSD-TTVARMLVGNKC 131 (222)
Q Consensus 63 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s----------~~~~~~~~~~i~~~~~-~~~p~iiv~nK~ 131 (222)
..+.+.+.|++|+..-..-|.+.+.++-.++|++.+++... +++...++..+..+.. ...++|+..||-
T Consensus 197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKk 276 (359)
T KOG0085|consen 197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 276 (359)
T ss_pred hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechh
Confidence 44567799999998888889999988888888777665321 2222334444444433 456889999999
Q ss_pred CCCcC----------------CCCCHHHHHHHHHHc----C-----CeE-EEEccCCCCCHHHHHHHHHHHHHHHh
Q 040481 132 DLESI----------------RNVSTEEGKSLAEAE----G-----LFF-METSALDSTNVKSAFEIVIREIYSNV 181 (222)
Q Consensus 132 Dl~~~----------------~~~~~~~~~~~~~~~----~-----~~~-~~~sa~~~~~i~~~~~~i~~~~~~~~ 181 (222)
|+.++ .....+.+++|..+. + +.| -.+.|.+..||.-+|...-+.++...
T Consensus 277 DlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~ 352 (359)
T KOG0085|consen 277 DLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 352 (359)
T ss_pred hhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence 98542 123334555665443 2 112 34678888999999987776665443
No 362
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.40 E-value=1.1e-05 Score=62.79 Aligned_cols=89 Identities=17% Similarity=0.068 Sum_probs=54.1
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcC--cCCCCCC-CccceeEEEEEEEEC-CeEEEEEEEeCCCcchh------hhhHH
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARN--EFNPHSK-ATIGVEFQTQSMEID-GKEVKAQIWDTAGQERF------RAVTS 83 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~------~~~~~ 83 (222)
.+..-|.|+|++++|||+|+|.|++. .+..... ..++..+......+. +....+.++||+|.... .....
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 44567899999999999999999998 5532222 222222222222221 23467889999995432 12223
Q ss_pred HhhcC--CCEEEEEEECCChh
Q 040481 84 AYYRG--AVGALIVYDITRRT 102 (222)
Q Consensus 84 ~~~~~--~d~vi~v~d~~~~~ 102 (222)
..+.. ++.+||..+.....
T Consensus 85 ~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 85 FALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHHhCEEEEeccCcccH
Confidence 33333 78888888775443
No 363
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.40 E-value=1.4e-06 Score=64.90 Aligned_cols=97 Identities=15% Similarity=0.080 Sum_probs=62.4
Q ss_pred CCcc-hhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHc
Q 040481 73 AGQE-RFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAE 151 (222)
Q Consensus 73 ~G~~-~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~ 151 (222)
||+. ..-......+.++|.+++|+|+.++..... ..+...+ .+.|+++|+||+|+.+.... ....++....
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~~-----~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~ 74 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKIL-----GNKPRIIVLNKADLADPKKT--KKWLKYFESK 74 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCC-hhhHhHh-----cCCCEEEEEehhhcCChHHH--HHHHHHHHhc
Confidence 4542 233445677899999999999987653211 1122222 23688999999998532111 1111222333
Q ss_pred CCeEEEEccCCCCCHHHHHHHHHHHH
Q 040481 152 GLFFMETSALDSTNVKSAFEIVIREI 177 (222)
Q Consensus 152 ~~~~~~~sa~~~~~i~~~~~~i~~~~ 177 (222)
+..++.+||+++.|++++...+...+
T Consensus 75 ~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 75 GEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHH
Confidence 55689999999999999998887764
No 364
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.39 E-value=1.6e-06 Score=62.44 Aligned_cols=77 Identities=18% Similarity=0.199 Sum_probs=52.4
Q ss_pred HHhhcCCCEEEEEEECCChhhHH--HHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEcc
Q 040481 83 SAYYRGAVGALIVYDITRRTTFD--SISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSA 160 (222)
Q Consensus 83 ~~~~~~~d~vi~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (222)
...+..+|++++|+|+.++.+.. .+.+|+... . .+.|+++|+||+|+.+... .....++....+..++++||
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa 79 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSA 79 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEe
Confidence 45678999999999998876533 334444322 1 4579999999999864222 12333445556778999999
Q ss_pred CCCCC
Q 040481 161 LDSTN 165 (222)
Q Consensus 161 ~~~~~ 165 (222)
.++.+
T Consensus 80 ~~~~~ 84 (141)
T cd01857 80 LKENA 84 (141)
T ss_pred cCCCc
Confidence 98764
No 365
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=1.1e-06 Score=71.56 Aligned_cols=151 Identities=16% Similarity=0.264 Sum_probs=92.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCCC--------------CC---------ccceeEEEEEEEECC---------
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHS--------------KA---------TIGVEFQTQSMEIDG--------- 62 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~--------------~~---------~~~~~~~~~~~~~~~--------- 62 (222)
-.++|+++|.-.+|||||+-.|..+..+... .. ..+.+--...+++..
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 3579999999999999999888665543221 00 011111111222211
Q ss_pred -eEEEEEEEeCCCcchhhhhHHHhhcC--CCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC
Q 040481 63 -KEVKAQIWDTAGQERFRAVTSAYYRG--AVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNV 139 (222)
Q Consensus 63 -~~~~~~i~D~~G~~~~~~~~~~~~~~--~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~ 139 (222)
..--+.++|.+|+..|...+...+.. .+...+|+++..+-.+.. .+.+..+.. .++|++++++|+|+.+...+
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A---L~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA---LNIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH---hCCCeEEEEEeeccccchhH
Confidence 11246799999999997766554433 578899999988755333 222333333 45899999999999754111
Q ss_pred ------------------------CHHHHHHHHHH----cCCeEEEEccCCCCCHHHH
Q 040481 140 ------------------------STEEGKSLAEA----EGLFFMETSALDSTNVKSA 169 (222)
Q Consensus 140 ------------------------~~~~~~~~~~~----~~~~~~~~sa~~~~~i~~~ 169 (222)
..+++...+.+ .-.|+|-+|+.+|+|++-+
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll 379 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL 379 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence 11222222222 2357899999999997654
No 366
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.38 E-value=3.6e-05 Score=55.76 Aligned_cols=146 Identities=18% Similarity=0.184 Sum_probs=81.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCC-Cc------------------
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTA-GQ------------------ 75 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-G~------------------ 75 (222)
..+||.|-|+||||||||+.++........+.- ..+....+.-++...-|.++|.. |.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kv---gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKV---GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCcee---eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 458999999999999999998864332111111 12333444456666667777765 31
Q ss_pred ---chhh----hhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHH
Q 040481 76 ---ERFR----AVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLA 148 (222)
Q Consensus 76 ---~~~~----~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~ 148 (222)
+.+. ......+..+|+ +++|---+..|.. .++...+......+.|++.++.+.+-. . ..+-.
T Consensus 81 V~v~~le~i~~~al~rA~~~aDv--IIIDEIGpMElks-~~f~~~ve~vl~~~kpliatlHrrsr~---P-----~v~~i 149 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADV--IIIDEIGPMELKS-KKFREAVEEVLKSGKPLIATLHRRSRH---P-----LVQRI 149 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCE--EEEecccchhhcc-HHHHHHHHHHhcCCCcEEEEEecccCC---h-----HHHHh
Confidence 1111 112223344554 4566655532211 456666777777778988888876531 1 11223
Q ss_pred HHcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 040481 149 EAEGLFFMETSALDSTNVKSAFEIVIREI 177 (222)
Q Consensus 149 ~~~~~~~~~~sa~~~~~i~~~~~~i~~~~ 177 (222)
...+..++. .+.+|-+.++..++..+
T Consensus 150 k~~~~v~v~---lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 150 KKLGGVYVF---LTPENRNRILNEILSVL 175 (179)
T ss_pred hhcCCEEEE---EccchhhHHHHHHHHHh
Confidence 344444443 35566667777666644
No 367
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.38 E-value=8.1e-07 Score=72.72 Aligned_cols=60 Identities=23% Similarity=0.315 Sum_probs=45.0
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcch
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 77 (222)
...++++++|-|+||||||||+|.+....... +.+|++.....+..+.. +.++||||.-.
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s-~~PG~Tk~~q~i~~~~~---i~LlDtPGii~ 189 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTS-NRPGTTKGIQWIKLDDG---IYLLDTPGIIP 189 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeC-CCCceecceEEEEcCCC---eEEecCCCcCC
Confidence 34578999999999999999999998763332 22366677777766653 66999999533
No 368
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.34 E-value=2.7e-06 Score=68.32 Aligned_cols=101 Identities=15% Similarity=0.065 Sum_probs=65.3
Q ss_pred CCCcch-hhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH
Q 040481 72 TAGQER-FRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEA 150 (222)
Q Consensus 72 ~~G~~~-~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~ 150 (222)
.|||.. ........+..+|++++|+|+.++.+... ..+...+ .+.|+++|+||+|+.+.... ....++...
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~-~~i~~~l-----~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~ 75 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN-PMIDEIR-----GNKPRLIVLNKADLADPAVT--KQWLKYFEE 75 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC-hhHHHHH-----CCCCEEEEEEccccCCHHHH--HHHHHHHHH
Confidence 366543 23455677899999999999987654221 1111222 24699999999999642111 111112233
Q ss_pred cCCeEEEEccCCCCCHHHHHHHHHHHHHHH
Q 040481 151 EGLFFMETSALDSTNVKSAFEIVIREIYSN 180 (222)
Q Consensus 151 ~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~ 180 (222)
.+.+++.+||+++.|+.++.+.+.+.+.+.
T Consensus 76 ~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 76 KGIKALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 456789999999999999988877765443
No 369
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.34 E-value=1.4e-06 Score=63.82 Aligned_cols=55 Identities=22% Similarity=0.263 Sum_probs=37.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCC-CCCCccceeEEEEEEEECCeEEEEEEEeCCC
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNP-HSKATIGVEFQTQSMEIDGKEVKAQIWDTAG 74 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 74 (222)
...+++++|.+++|||||+|+|.+..... ...+.++.... .+.++ ..+.++||||
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~--~~~~~---~~~~liDtPG 154 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQ--EVKLD---NKIKLLDTPG 154 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceE--EEEec---CCEEEEECCC
Confidence 45789999999999999999999865322 22233333332 33333 2367999998
No 370
>PRK14974 cell division protein FtsY; Provisional
Probab=98.32 E-value=5.5e-06 Score=67.98 Aligned_cols=94 Identities=14% Similarity=0.036 Sum_probs=55.8
Q ss_pred EEEEEEeCCCcchhhhhH----HHh--hcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC
Q 040481 65 VKAQIWDTAGQERFRAVT----SAY--YRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRN 138 (222)
Q Consensus 65 ~~~~i~D~~G~~~~~~~~----~~~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~ 138 (222)
+.+.++||+|........ ..+ .-..|.+++|+|+..++..-... ..+.... + .--+|+||.|....-.
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a---~~f~~~~--~-~~giIlTKlD~~~~~G 296 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA---REFNEAV--G-IDGVILTKVDADAKGG 296 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH---HHHHhcC--C-CCEEEEeeecCCCCcc
Confidence 457899999965432221 122 12468899999997764322111 1111111 1 2378899999753222
Q ss_pred CCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 040481 139 VSTEEGKSLAEAEGLFFMETSALDSTNVKSAF 170 (222)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 170 (222)
.+...+...+.|+..++ +|.+++++.
T Consensus 297 ----~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 297 ----AALSIAYVIGKPILFLG--VGQGYDDLI 322 (336)
T ss_pred ----HHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence 23445556788888776 788888864
No 371
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.32 E-value=4.6e-06 Score=61.31 Aligned_cols=63 Identities=16% Similarity=0.145 Sum_probs=37.2
Q ss_pred EEEEEEeCCCcchhhhhHHH--------hhcCCCEEEEEEECCChhh-HHHHHHHHHHHHhcCCCCCcEEEEEeCCCC
Q 040481 65 VKAQIWDTAGQERFRAVTSA--------YYRGAVGALIVYDITRRTT-FDSISRWLDELKTHSDTTVARMLVGNKCDL 133 (222)
Q Consensus 65 ~~~~i~D~~G~~~~~~~~~~--------~~~~~d~vi~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl 133 (222)
....++|++|.......... ....+|.+++++|+..... +.....+...+.... +||+||+|+
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad------~ivlnk~dl 158 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFAD------RILLNKTDL 158 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCC------EEEEecccC
Confidence 45678999996544333222 2345788999999865432 112222333333322 789999996
No 372
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.32 E-value=1.2e-05 Score=64.41 Aligned_cols=95 Identities=14% Similarity=0.048 Sum_probs=56.8
Q ss_pred EEEEEEEeCCCcchhhhhHH-------Hhh-----cCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCC
Q 040481 64 EVKAQIWDTAGQERFRAVTS-------AYY-----RGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKC 131 (222)
Q Consensus 64 ~~~~~i~D~~G~~~~~~~~~-------~~~-----~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~ 131 (222)
.+.+.++||||....+.... ... ..+|.+++|+|++.+.. .+.. ...+....+ +.-+|+||.
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~--~~~~-~~~f~~~~~---~~g~IlTKl 227 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQN--ALEQ-AKVFNEAVG---LTGIILTKL 227 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHH--HHHH-HHHHHhhCC---CCEEEEEcc
Confidence 36678999999654333221 111 23789999999976532 2222 222222111 347899999
Q ss_pred CCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 040481 132 DLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKSAF 170 (222)
Q Consensus 132 Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 170 (222)
|...... .+.......+.|+..++ +|.+++++-
T Consensus 228 De~~~~G----~~l~~~~~~~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 228 DGTAKGG----IILSIAYELKLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred CCCCCcc----HHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence 9754222 34445666788887777 777777653
No 373
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.32 E-value=1.7e-05 Score=67.66 Aligned_cols=138 Identities=20% Similarity=0.272 Sum_probs=86.0
Q ss_pred CCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCC-C-----CCc------------------------------------
Q 040481 11 GGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPH-S-----KAT------------------------------------ 48 (222)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~-~-----~~~------------------------------------ 48 (222)
...++.++|++||+..+|||+.+..+....+.+- + ..+
T Consensus 303 nt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e 382 (980)
T KOG0447|consen 303 NTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHE 382 (980)
T ss_pred cccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHH
Confidence 3456778999999999999999987754332110 0 000
Q ss_pred ------------cceeEEEEEEEECCeEE-EEEEEeCCCc-------------chhhhhHHHhhcCCCEEEEEEECCChh
Q 040481 49 ------------IGVEFQTQSMEIDGKEV-KAQIWDTAGQ-------------ERFRAVTSAYYRGAVGALIVYDITRRT 102 (222)
Q Consensus 49 ------------~~~~~~~~~~~~~~~~~-~~~i~D~~G~-------------~~~~~~~~~~~~~~d~vi~v~d~~~~~ 102 (222)
.++.-.+....+.|.++ .+.++|.||. +....+..++..+.+++|+|+--..-.
T Consensus 383 ~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVD 462 (980)
T KOG0447|consen 383 IELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVD 462 (980)
T ss_pred HHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcc
Confidence 01122222333333332 3568899992 234567788999999999998643221
Q ss_pred hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH
Q 040481 103 TFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEA 150 (222)
Q Consensus 103 s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~ 150 (222)
.-. ...-..+.+..+.+...|+|.+|.|+.+..-..+..++.....
T Consensus 463 AER--SnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleG 508 (980)
T KOG0447|consen 463 AER--SIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEG 508 (980)
T ss_pred hhh--hhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhc
Confidence 100 1122334455567788899999999988767777777766554
No 374
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.30 E-value=5e-06 Score=64.58 Aligned_cols=89 Identities=21% Similarity=0.190 Sum_probs=59.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchh-------hhhHHHhhcCC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERF-------RAVTSAYYRGA 89 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~ 89 (222)
-+|.++|.|.+|||||+..|.+..........++.......+.+.+. ++++.|.||.-+- .....+..+.|
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~ga--Kiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGA--KIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEecccc--ceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 48999999999999999999876654333333333333344445554 4669999994321 12233456778
Q ss_pred CEEEEEEECCChhhHHHH
Q 040481 90 VGALIVYDITRRTTFDSI 107 (222)
Q Consensus 90 d~vi~v~d~~~~~s~~~~ 107 (222)
+.+++|.|+..+-+...+
T Consensus 138 nli~~vld~~kp~~hk~~ 155 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKI 155 (358)
T ss_pred cEEEEEeeccCcccHHHH
Confidence 999999999887665444
No 375
>PRK12288 GTPase RsgA; Reviewed
Probab=98.28 E-value=1.7e-06 Score=71.43 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=36.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcCCCC-CCC-----ccceeEEEEEEEECCeEEEEEEEeCCCcchhh
Q 040481 19 IVIIGDSAVGKSNLLSRYARNEFNPH-SKA-----TIGVEFQTQSMEIDGKEVKAQIWDTAGQERFR 79 (222)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 79 (222)
++++|.+|||||||||+|++...... ..+ ...++.....+.+.+.. .++||||...+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 78999999999999999997643211 111 11122233333343322 399999987764
No 376
>PRK01889 GTPase RsgA; Reviewed
Probab=98.26 E-value=5.5e-06 Score=68.84 Aligned_cols=84 Identities=19% Similarity=0.173 Sum_probs=60.6
Q ss_pred hhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-HcCCeEEEEccCCC
Q 040481 85 YYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAE-AEGLFFMETSALDS 163 (222)
Q Consensus 85 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~ 163 (222)
...++|.+++|+++........+..++..+... +++.+||+||+||.+.. .+....+.. ..+.+++.+|++++
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g 182 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDG 182 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCC
Confidence 357899999999997655555667777766653 46779999999997531 111222222 45788999999999
Q ss_pred CCHHHHHHHHH
Q 040481 164 TNVKSAFEIVI 174 (222)
Q Consensus 164 ~~i~~~~~~i~ 174 (222)
.|++++..++.
T Consensus 183 ~gl~~L~~~L~ 193 (356)
T PRK01889 183 EGLDVLAAWLS 193 (356)
T ss_pred ccHHHHHHHhh
Confidence 99999887764
No 377
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.24 E-value=5.2e-06 Score=67.02 Aligned_cols=101 Identities=17% Similarity=0.149 Sum_probs=65.7
Q ss_pred CCCcch-hhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH
Q 040481 72 TAGQER-FRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEA 150 (222)
Q Consensus 72 ~~G~~~-~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~ 150 (222)
.|||.. -.......+..+|++|+|+|+.++.+... .++..+.. +.|+++|+||+|+.+... .+...++...
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~----~kp~iiVlNK~DL~~~~~--~~~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG----NKPRLLILNKSDLADPEV--TKKWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC----CCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence 467643 23445667899999999999987754221 12222211 468999999999864211 1111222234
Q ss_pred cCCeEEEEccCCCCCHHHHHHHHHHHHHHH
Q 040481 151 EGLFFMETSALDSTNVKSAFEIVIREIYSN 180 (222)
Q Consensus 151 ~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~ 180 (222)
.+.+++.+||+++.|+.++++.+...+.+.
T Consensus 79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 79 QGIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 467789999999999999988877765443
No 378
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.22 E-value=1.9e-05 Score=66.70 Aligned_cols=114 Identities=15% Similarity=0.104 Sum_probs=62.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc------CcC----CCCCC-----------CccceeEEEEEEEEC-------------
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYAR------NEF----NPHSK-----------ATIGVEFQTQSMEID------------- 61 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~------~~~----~~~~~-----------~~~~~~~~~~~~~~~------------- 61 (222)
.-.|+++|++||||||++..|.. ... ...+. ...+.++.......+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 35789999999999999998852 111 01111 001222221110001
Q ss_pred CeEEEEEEEeCCCcchhhhhHH----Hh--hcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040481 62 GKEVKAQIWDTAGQERFRAVTS----AY--YRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLES 135 (222)
Q Consensus 62 ~~~~~~~i~D~~G~~~~~~~~~----~~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 135 (222)
...+.+.|+||+|....+.... .+ ....+.+++|+|+.-++.-.... ..+.... -+.-+|+||.|...
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a---~~F~~~~---~~~g~IlTKlD~~a 253 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQA---KAFKDSV---DVGSVIITKLDGHA 253 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHH---HHHHhcc---CCcEEEEECccCCC
Confidence 0246788999999544322211 11 23467899999998765422222 2222211 24578999999753
No 379
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.21 E-value=2.5e-06 Score=68.06 Aligned_cols=59 Identities=22% Similarity=0.246 Sum_probs=37.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC------CCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhh
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEF------NPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFR 79 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 79 (222)
..+++|++|||||||+|+|.+... .........++....-+.+++.+ .++||||...+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 568999999999999999977422 12221222233344445554333 389999977654
No 380
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.20 E-value=1.2e-05 Score=62.50 Aligned_cols=69 Identities=17% Similarity=0.216 Sum_probs=49.3
Q ss_pred EEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChh-------hHHHH---HHHHHHHHhcCC-CCCcEEEEEeCCCC
Q 040481 65 VKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRT-------TFDSI---SRWLDELKTHSD-TTVARMLVGNKCDL 133 (222)
Q Consensus 65 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------s~~~~---~~~~~~i~~~~~-~~~p~iiv~nK~Dl 133 (222)
+.|+.+|++|+.....-|...+..+.++|||+..+... +-..+ ..++..+.+... ..+.+|+..||.|+
T Consensus 202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDl 281 (379)
T KOG0099|consen 202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 281 (379)
T ss_pred cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHH
Confidence 56889999999999999999999999999999987521 11222 222233333222 34677888999997
No 381
>PRK12289 GTPase RsgA; Reviewed
Probab=98.19 E-value=3e-06 Score=70.03 Aligned_cols=58 Identities=22% Similarity=0.203 Sum_probs=35.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCC-CCc-----cceeEEEEEEEECCeEEEEEEEeCCCcchh
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHS-KAT-----IGVEFQTQSMEIDGKEVKAQIWDTAGQERF 78 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 78 (222)
.++|+|++|||||||||+|++....... .+. ..++.....+...+.. .++||||...+
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccc
Confidence 3799999999999999999876432111 111 1122333344443322 49999997554
No 382
>PRK13796 GTPase YqeH; Provisional
Probab=98.18 E-value=1.7e-05 Score=66.14 Aligned_cols=92 Identities=23% Similarity=0.250 Sum_probs=60.3
Q ss_pred hhhhhHHHhhcCCC-EEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHH----HHHHHc
Q 040481 77 RFRAVTSAYYRGAV-GALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGK----SLAEAE 151 (222)
Q Consensus 77 ~~~~~~~~~~~~~d-~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~----~~~~~~ 151 (222)
.+..... .+...+ .+++|+|+.|.. ..|...+.+... ..|+++|+||+|+.+ .....+.+. .++...
T Consensus 58 ~~~~~l~-~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~-~~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 58 DFLKLLN-GIGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLP-KSVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHH-hhcccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCC-CccCHHHHHHHHHHHHHhc
Confidence 3444333 345555 889999997743 224444444332 468999999999964 233333333 335555
Q ss_pred CC---eEEEEccCCCCCHHHHHHHHHHH
Q 040481 152 GL---FFMETSALDSTNVKSAFEIVIRE 176 (222)
Q Consensus 152 ~~---~~~~~sa~~~~~i~~~~~~i~~~ 176 (222)
++ .++.+||+++.|++++++.+.+.
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 65 58999999999999999988654
No 383
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=1.1e-05 Score=75.23 Aligned_cols=111 Identities=23% Similarity=0.260 Sum_probs=65.0
Q ss_pred EEEcCCCCCHHHHHHHHhcCcCCCCC---CCc-ccee-EEEEEEEECCeEEEEEEEeCCCc--------chhhhhHHHh-
Q 040481 20 VIIGDSAVGKSNLLSRYARNEFNPHS---KAT-IGVE-FQTQSMEIDGKEVKAQIWDTAGQ--------ERFRAVTSAY- 85 (222)
Q Consensus 20 ~i~G~~~~GKStli~~l~~~~~~~~~---~~~-~~~~-~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~~- 85 (222)
+|+|++|+||||++.. .+..++... ... .+.. .... ..+.+ ...++||.|. +.....|..+
T Consensus 129 ~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT~~cd-wwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL 203 (1188)
T COG3523 129 MVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGTRNCD-WWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFL 203 (1188)
T ss_pred EEecCCCCCcchHHhc-ccccCcchhhhccccccCCCCcccC-ccccc---ceEEEcCCcceecccCcchhhHHHHHHHH
Confidence 7899999999999854 233222111 000 0100 1111 11222 2358999982 1223445544
Q ss_pred --------hcCCCEEEEEEECCChhhH---------HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040481 86 --------YRGAVGALIVYDITRRTTF---------DSISRWLDELKTHSDTTVARMLVGNKCDLES 135 (222)
Q Consensus 86 --------~~~~d~vi~v~d~~~~~s~---------~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 135 (222)
.+..|+||+.+|+.+.-+- ..+..-+.++........||+|++||.|+..
T Consensus 204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 3567999999999764221 1122335666666778899999999999864
No 384
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.15 E-value=7.9e-05 Score=62.10 Aligned_cols=143 Identities=18% Similarity=0.244 Sum_probs=84.5
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCCCC-----------------CC-Cc---cc---eeEEEEEEEE-CCeEEEEEE
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFNPH-----------------SK-AT---IG---VEFQTQSMEI-DGKEVKAQI 69 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~-----------------~~-~~---~~---~~~~~~~~~~-~~~~~~~~i 69 (222)
..+=|.+|||-.+||||||+++......+. .. .+ +. +.-.-..+.+ ++..+.+.+
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL 95 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL 95 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence 356789999999999999999955322111 00 00 00 1111123333 567888999
Q ss_pred EeCCCc-------------------chhhhhH----------HHhh--cCCCEEEEEEECCC----hhhHHHH-HHHHHH
Q 040481 70 WDTAGQ-------------------ERFRAVT----------SAYY--RGAVGALIVYDITR----RTTFDSI-SRWLDE 113 (222)
Q Consensus 70 ~D~~G~-------------------~~~~~~~----------~~~~--~~~d~vi~v~d~~~----~~s~~~~-~~~~~~ 113 (222)
+||.|- +.|+.-. +..+ ++.-++++.-|-+- ++.+..+ .+...+
T Consensus 96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E 175 (492)
T PF09547_consen 96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE 175 (492)
T ss_pred EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence 999991 0111000 0011 33446777666642 4455554 334555
Q ss_pred HHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCC
Q 040481 114 LKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALD 162 (222)
Q Consensus 114 i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (222)
+.. -+.|++|++|-.+-. ..-..+.+.++..+++++++++++.+
T Consensus 176 Lk~---igKPFvillNs~~P~--s~et~~L~~eL~ekY~vpVlpvnc~~ 219 (492)
T PF09547_consen 176 LKE---IGKPFVILLNSTKPY--SEETQELAEELEEKYDVPVLPVNCEQ 219 (492)
T ss_pred HHH---hCCCEEEEEeCCCCC--CHHHHHHHHHHHHHhCCcEEEeehHH
Confidence 555 457999999987643 33445567778888999988887664
No 385
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.14 E-value=5.5e-06 Score=65.33 Aligned_cols=57 Identities=25% Similarity=0.257 Sum_probs=35.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCC------CCCccceeEEEEEEEECCeEEEEEEEeCCCcchh
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPH------SKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERF 78 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 78 (222)
.++++|++|||||||+|+|.+...... ......++.....+.+.+ . .++||||...+
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~-~---~liDtPG~~~~ 184 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG-G---LIADTPGFNEF 184 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC-c---EEEeCCCcccc
Confidence 679999999999999999987643211 111111222223333333 2 59999997554
No 386
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.11 E-value=2e-05 Score=64.44 Aligned_cols=149 Identities=15% Similarity=0.178 Sum_probs=83.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCC------------------CCcccee-----EEEEEEEE------------
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHS------------------KATIGVE-----FQTQSMEI------------ 60 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~------------------~~~~~~~-----~~~~~~~~------------ 60 (222)
+++|+++|+..+|||||+-.|+.+.+.... ..+.+-+ .....++.
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 479999999999999999777665432211 1111111 11111111
Q ss_pred --CCeEEEEEEEeCCCcchhhhhHH--HhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcC
Q 040481 61 --DGKEVKAQIWDTAGQERFRAVTS--AYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136 (222)
Q Consensus 61 --~~~~~~~~i~D~~G~~~~~~~~~--~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~ 136 (222)
.+..-.+.|+|.+|++.|...+. ..-+..|...+++-++-+-- .-..+.+... ....+|+++|.+|+|+-..
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIi-GmTKEHLgLA---LaL~VPVfvVVTKIDMCPA 288 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGII-GMTKEHLGLA---LALHVPVFVVVTKIDMCPA 288 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccce-eccHHhhhhh---hhhcCcEEEEEEeeccCcH
Confidence 11122367999999999865432 23355677777777765421 0001112211 1245799999999997431
Q ss_pred CCCCHHHH-----------------------------HHHHHHcCCeEEEEccCCCCCHHHH
Q 040481 137 RNVSTEEG-----------------------------KSLAEAEGLFFMETSALDSTNVKSA 169 (222)
Q Consensus 137 ~~~~~~~~-----------------------------~~~~~~~~~~~~~~sa~~~~~i~~~ 169 (222)
.+..+.. ..|..+.-|++|.+|-.+|+|++-+
T Consensus 289 -NiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LL 349 (641)
T KOG0463|consen 289 -NILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLL 349 (641)
T ss_pred -HHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHH
Confidence 1111111 1222233467899999999998653
No 387
>PRK13796 GTPase YqeH; Provisional
Probab=98.09 E-value=5.9e-06 Score=68.89 Aligned_cols=57 Identities=21% Similarity=0.369 Sum_probs=37.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCC----CCCCccceeEEEEEEEECCeEEEEEEEeCCCcc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNP----HSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQE 76 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 76 (222)
.++.++|.+|||||||+|+|++..... ...+..|++.....+.+++. ..++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 379999999999999999998643111 01122344445555555432 3599999963
No 388
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.09 E-value=8.8e-06 Score=67.76 Aligned_cols=58 Identities=19% Similarity=0.372 Sum_probs=38.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCC----CCCCccceeEEEEEEEECCeEEEEEEEeCCCcch
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNP----HSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQER 77 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 77 (222)
.+|+++|.+|||||||+|+|++..... ......+++.....+..++. +.++||||...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~---~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDG---HSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCC---CEEEECCCCCC
Confidence 489999999999999999998753211 11122344444555554321 45999999643
No 389
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.05 E-value=6.6e-05 Score=62.44 Aligned_cols=146 Identities=16% Similarity=0.099 Sum_probs=74.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCC---CCCCCcc--------------------ceeEEEEEEE-------ECCeEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFN---PHSKATI--------------------GVEFQTQSME-------IDGKEVK 66 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~---~~~~~~~--------------------~~~~~~~~~~-------~~~~~~~ 66 (222)
-.++++|++|+||||++..|...... ....... +..+....-. ..-....
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D 217 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH 217 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence 37889999999999999999654211 0000000 1111111000 0012346
Q ss_pred EEEEeCCCcchhhhhHH---Hhh---cCCCEEEEEEECCCh-hhHHHHHHHHHHHHhcCCCC--CcEEEEEeCCCCCcCC
Q 040481 67 AQIWDTAGQERFRAVTS---AYY---RGAVGALIVYDITRR-TTFDSISRWLDELKTHSDTT--VARMLVGNKCDLESIR 137 (222)
Q Consensus 67 ~~i~D~~G~~~~~~~~~---~~~---~~~d~vi~v~d~~~~-~s~~~~~~~~~~i~~~~~~~--~p~iiv~nK~Dl~~~~ 137 (222)
+.++||+|....+.... ..+ ...+-.++|++++.. ..+..+..-+.......... -+-=+|+||.|....
T Consensus 218 lVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~- 296 (374)
T PRK14722 218 MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASN- 296 (374)
T ss_pred EEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCC-
Confidence 78999999654332221 122 223456899999765 34444433233222111000 123578899997532
Q ss_pred CCCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 040481 138 NVSTEEGKSLAEAEGLFFMETSALDSTNVKS 168 (222)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 168 (222)
.=.+..++...+.|+..++ +|.+|.+
T Consensus 297 ---~G~~l~~~~~~~lPi~yvt--~Gq~VPe 322 (374)
T PRK14722 297 ---LGGVLDTVIRYKLPVHYVS--TGQKVPE 322 (374)
T ss_pred ---ccHHHHHHHHHCcCeEEEe--cCCCCCc
Confidence 2234556667777755443 3344443
No 390
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.00 E-value=7.9e-05 Score=55.48 Aligned_cols=83 Identities=14% Similarity=0.055 Sum_probs=45.9
Q ss_pred EEEEEEEeCCCcchhh----hhHHHhh--cCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCC
Q 040481 64 EVKAQIWDTAGQERFR----AVTSAYY--RGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIR 137 (222)
Q Consensus 64 ~~~~~i~D~~G~~~~~----~~~~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~ 137 (222)
.+.+.++|++|..... .....+. ...+.+++|+|+..... ...+...+..... ..-+|.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~~---~~~viltk~D~~~~- 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEALG---ITGVILTKLDGDAR- 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhCC---CCEEEEECCcCCCC-
Confidence 3456789999974322 1111222 24899999999965532 2233333332222 24677899997532
Q ss_pred CCCHHHHHHHHHHcCCeEE
Q 040481 138 NVSTEEGKSLAEAEGLFFM 156 (222)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~ 156 (222)
...+...+...++|+.
T Consensus 155 ---~g~~~~~~~~~~~p~~ 170 (173)
T cd03115 155 ---GGAALSIRAVTGKPIK 170 (173)
T ss_pred ---cchhhhhHHHHCcCeE
Confidence 1222336666666654
No 391
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.00 E-value=7.6e-05 Score=59.74 Aligned_cols=91 Identities=18% Similarity=0.138 Sum_probs=67.6
Q ss_pred HHhhcCCCEEEEEEECCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccC
Q 040481 83 SAYYRGAVGALIVYDITRRT-TFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSAL 161 (222)
Q Consensus 83 ~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (222)
+.-..+.|-+++|+++.++. +...+.+++-..+. .++..+||+||+||.++.....++........+.+++.+|++
T Consensus 74 Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~ 150 (301)
T COG1162 74 RPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAK 150 (301)
T ss_pred CCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCc
Confidence 33445577788888888876 56666777666655 345668899999998654444345666778899999999999
Q ss_pred CCCCHHHHHHHHHHH
Q 040481 162 DSTNVKSAFEIVIRE 176 (222)
Q Consensus 162 ~~~~i~~~~~~i~~~ 176 (222)
++.++.++...+..+
T Consensus 151 ~~~~~~~l~~~l~~~ 165 (301)
T COG1162 151 NGDGLEELAELLAGK 165 (301)
T ss_pred CcccHHHHHHHhcCC
Confidence 999999987766544
No 392
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.97 E-value=1.6e-05 Score=64.13 Aligned_cols=60 Identities=22% Similarity=0.246 Sum_probs=37.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCCCC-C-----CccceeEEEEEEEECCeEEEEEEEeCCCcchhh
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNPHS-K-----ATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFR 79 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 79 (222)
-.++++|++|+|||||+|.|++....... . ....++.....+...+.. .++|+||...+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCccC
Confidence 47899999999999999999886532211 1 111122333344443222 489999986653
No 393
>PRK00098 GTPase RsgA; Reviewed
Probab=97.97 E-value=1.8e-05 Score=64.27 Aligned_cols=57 Identities=25% Similarity=0.292 Sum_probs=34.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCC-Cc-----cceeEEEEEEEECCeEEEEEEEeCCCcch
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSK-AT-----IGVEFQTQSMEIDGKEVKAQIWDTAGQER 77 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 77 (222)
.++++|++|+|||||+|+|++........ +. ..++.....+.+++. ..++|+||...
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~ 228 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS 228 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence 68999999999999999998765322111 10 011222233333332 25899999754
No 394
>PRK13695 putative NTPase; Provisional
Probab=97.96 E-value=0.0002 Score=53.44 Aligned_cols=77 Identities=10% Similarity=0.056 Sum_probs=43.8
Q ss_pred hhcCCCEEEEEEEC---CChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccC
Q 040481 85 YYRGAVGALIVYDI---TRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSAL 161 (222)
Q Consensus 85 ~~~~~d~vi~v~d~---~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (222)
.+..++. +++|- .+..+ ..+...+......+.|++++.+|.... .....+....+..++++
T Consensus 93 ~l~~~~~--lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~~~~-------~~~~~i~~~~~~~i~~~--- 156 (174)
T PRK13695 93 ALEEADV--IIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRRSVH-------PFVQEIKSRPGGRVYEL--- 156 (174)
T ss_pred ccCCCCE--EEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECchhhH-------HHHHHHhccCCcEEEEE---
Confidence 3445665 67774 22222 334444444444567988888885321 22334555566777777
Q ss_pred CCCCHHHHHHHHHHHH
Q 040481 162 DSTNVKSAFEIVIREI 177 (222)
Q Consensus 162 ~~~~i~~~~~~i~~~~ 177 (222)
+.+|-+++++.+.+.+
T Consensus 157 ~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 157 TPENRDSLPFEILNRL 172 (174)
T ss_pred cchhhhhHHHHHHHHH
Confidence 5556667777666643
No 395
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.96 E-value=0.00052 Score=51.30 Aligned_cols=85 Identities=24% Similarity=0.226 Sum_probs=58.9
Q ss_pred eEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHH
Q 040481 63 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTE 142 (222)
Q Consensus 63 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~ 142 (222)
..+.+.++|+|+.... .....+..+|.+++++..+.. ++..+..++..+... +.|+.+|+|+.|... -..+
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~---~~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPS-GLHDLERAVELVRHF---GIPVGVVINKYDLND---EIAE 161 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHHc---CCCEEEEEeCCCCCc---chHH
Confidence 3567889999975322 334567889999999998743 556666666666543 357889999998643 2344
Q ss_pred HHHHHHHHcCCeEE
Q 040481 143 EGKSLAEAEGLFFM 156 (222)
Q Consensus 143 ~~~~~~~~~~~~~~ 156 (222)
+.+++....+++++
T Consensus 162 ~~~~~~~~~~~~vl 175 (179)
T cd03110 162 EIEDYCEEEGIPIL 175 (179)
T ss_pred HHHHHHHHcCCCeE
Confidence 56777777887765
No 396
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.94 E-value=6.6e-05 Score=55.70 Aligned_cols=135 Identities=19% Similarity=0.234 Sum_probs=65.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeC-CCc---------------------
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDT-AGQ--------------------- 75 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~G~--------------------- 75 (222)
+|+|-|++|+|||||+++++..-.... .+.. .+....+.-++...-+.+.|. .|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~-~~v~--Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKG-LPVG--GFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTC-GGEE--EEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccC-Cccc--eEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 689999999999999999875431110 0111 122222223444444455555 221
Q ss_pred -chhhh----hHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCC-CCCcCCCCCHHHHHHHHH
Q 040481 76 -ERFRA----VTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKC-DLESIRNVSTEEGKSLAE 149 (222)
Q Consensus 76 -~~~~~----~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~-Dl~~~~~~~~~~~~~~~~ 149 (222)
+.+.. .....+..+| ++|+|---+..+.. ..|.+.+........|++.++.+. +.+ ....+..
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl~~-~~F~~~v~~~l~s~~~vi~vv~~~~~~~--------~l~~i~~ 146 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMELKS-PGFREAVEKLLDSNKPVIGVVHKRSDNP--------FLEEIKR 146 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---STTCCC--CHHHHHHHHHHCTTSEEEEE--SS--SC--------CHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhhcC-HHHHHHHHHHHcCCCcEEEEEecCCCcH--------HHHHHHh
Confidence 11111 1111223444 77788654422111 345555555555667877777776 321 2344666
Q ss_pred HcCCeEEEEccCCCCCH
Q 040481 150 AEGLFFMETSALDSTNV 166 (222)
Q Consensus 150 ~~~~~~~~~sa~~~~~i 166 (222)
..++.+++++..+...+
T Consensus 147 ~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 147 RPDVKIFEVTEENRDAL 163 (168)
T ss_dssp TTTSEEEE--TTTCCCH
T ss_pred CCCcEEEEeChhHHhhH
Confidence 67788999876665544
No 397
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.87 E-value=0.00017 Score=54.88 Aligned_cols=138 Identities=20% Similarity=0.156 Sum_probs=73.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCC----------CC-----------CccceeEEEEEEEE-------------CCe
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPH----------SK-----------ATIGVEFQTQSMEI-------------DGK 63 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~----------~~-----------~~~~~~~~~~~~~~-------------~~~ 63 (222)
-|+++|+.||||||.+-+|........ +. ...+.++....... ...
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~ 82 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKK 82 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhc
Confidence 579999999999999988854321111 00 00122222211000 011
Q ss_pred EEEEEEEeCCCcchhhhh----HHHhh--cCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCC
Q 040481 64 EVKAQIWDTAGQERFRAV----TSAYY--RGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIR 137 (222)
Q Consensus 64 ~~~~~i~D~~G~~~~~~~----~~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~ 137 (222)
.+.+.++||+|....+.. ...++ ...+-+++|.+++..+. .+......... .. +-=+|+||.|...
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~~~~~~~~~-~~---~~~lIlTKlDet~-- 154 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLEQALAFYEA-FG---IDGLILTKLDETA-- 154 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHHHHHHHHHH-SS---TCEEEEESTTSSS--
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHHHHHHHhhc-cc---CceEEEEeecCCC--
Confidence 245789999995443221 11111 25678999999987753 22222222221 11 2257899999753
Q ss_pred CCCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 040481 138 NVSTEEGKSLAEAEGLFFMETSALDSTNVK 167 (222)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 167 (222)
..-.+..++...+.|+-.++ +|.+|+
T Consensus 155 --~~G~~l~~~~~~~~Pi~~it--~Gq~V~ 180 (196)
T PF00448_consen 155 --RLGALLSLAYESGLPISYIT--TGQRVD 180 (196)
T ss_dssp --TTHHHHHHHHHHTSEEEEEE--SSSSTT
T ss_pred --CcccceeHHHHhCCCeEEEE--CCCChh
Confidence 22345667778888866554 344443
No 398
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.87 E-value=7.4e-05 Score=54.26 Aligned_cols=58 Identities=19% Similarity=0.155 Sum_probs=36.4
Q ss_pred EEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCC
Q 040481 64 EVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCD 132 (222)
Q Consensus 64 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D 132 (222)
.+.+.++|++|.... ...++..+|-+|++...+-.+.+.-+. ...+.. .=++++||.|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k--~~~~~~------~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIK--AGIMEI------ADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhh--hhHhhh------cCEEEEeCCC
Confidence 456789999885432 234788899999999887443322211 122222 2288999987
No 399
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.87 E-value=2.2e-05 Score=66.36 Aligned_cols=59 Identities=17% Similarity=0.158 Sum_probs=43.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchh
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERF 78 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 78 (222)
.+.|.+||-|+|||||+||+|.+.+.... ..|+|-+...+++.++. .+-+.||||.-..
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsV-S~TPGkTKHFQTi~ls~---~v~LCDCPGLVfP 372 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSV-SSTPGKTKHFQTIFLSP---SVCLCDCPGLVFP 372 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeee-ecCCCCcceeEEEEcCC---CceecCCCCcccc
Confidence 68999999999999999999999875433 23335555566665543 2559999996543
No 400
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.86 E-value=0.00029 Score=60.87 Aligned_cols=138 Identities=16% Similarity=0.205 Sum_probs=71.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCC---------CCCC-cc-----------ceeEEEEEEEE---------CCeEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNP---------HSKA-TI-----------GVEFQTQSMEI---------DGKEVK 66 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~---------~~~~-~~-----------~~~~~~~~~~~---------~~~~~~ 66 (222)
-.|+|+|+.|+||||++..|...-... ..++ .. ...+......- ....+.
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~D 430 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDYK 430 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccCC
Confidence 478899999999999998886421100 0000 00 00011111100 012466
Q ss_pred EEEEeCCCcchhhhhHHH---hhc--CCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCH
Q 040481 67 AQIWDTAGQERFRAVTSA---YYR--GAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVST 141 (222)
Q Consensus 67 ~~i~D~~G~~~~~~~~~~---~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~ 141 (222)
+.|+||+|....+..... .+. .....++|++.... ...+...+..+... .+.-+|+||.|... ..
T Consensus 431 LVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~~----~~~gvILTKlDEt~----~l 500 (559)
T PRK12727 431 LVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAHA----KPQGVVLTKLDETG----RF 500 (559)
T ss_pred EEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHhh----CCeEEEEecCcCcc----ch
Confidence 889999996443222111 111 12356778887653 33333333333222 25579999999743 22
Q ss_pred HHHHHHHHHcCCeEEEEccCCCCCH
Q 040481 142 EEGKSLAEAEGLFFMETSALDSTNV 166 (222)
Q Consensus 142 ~~~~~~~~~~~~~~~~~sa~~~~~i 166 (222)
-.+.......+.++..++ +|..|
T Consensus 501 G~aLsv~~~~~LPI~yvt--~GQ~V 523 (559)
T PRK12727 501 GSALSVVVDHQMPITWVT--DGQRV 523 (559)
T ss_pred hHHHHHHHHhCCCEEEEe--CCCCc
Confidence 345566777777765554 34455
No 401
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.85 E-value=0.001 Score=48.85 Aligned_cols=145 Identities=12% Similarity=0.049 Sum_probs=99.2
Q ss_pred CCCCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcC
Q 040481 9 GGGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRG 88 (222)
Q Consensus 9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 88 (222)
++-|......|+++|..+.++..|..++..... ++..+...... .|=..+... .-..
T Consensus 8 ~klp~ln~atiLLVg~e~~~~~~LA~a~l~~~~----------~~~l~Vh~a~s---------LPLp~e~~~----lRpr 64 (176)
T PF11111_consen 8 DKLPELNTATILLVGTEEALLQQLAEAMLEEDK----------EFKLKVHLAKS---------LPLPSENNN----LRPR 64 (176)
T ss_pred ccCCCcceeEEEEecccHHHHHHHHHHHHhhcc----------ceeEEEEEecc---------CCCcccccC----CCce
Confidence 455666788999999999999999999985221 01111111110 111111111 2355
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 040481 89 AVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKS 168 (222)
Q Consensus 89 ~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 168 (222)
.|.|+|++|.....++..++.-+..+...--.+ .+.++++-....+...+...++.+++..++++++.+.-.+..+...
T Consensus 65 IDlIVFvinl~sk~SL~~ve~SL~~vd~~fflG-KVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~ 143 (176)
T PF11111_consen 65 IDLIVFVINLHSKYSLQSVEASLSHVDPSFFLG-KVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTS 143 (176)
T ss_pred eEEEEEEEecCCcccHHHHHHHHhhCChhhhcc-ceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHH
Confidence 799999999999999998887666654433333 4567777777777778899999999999999999888877777666
Q ss_pred HHHHHHHHH
Q 040481 169 AFEIVIREI 177 (222)
Q Consensus 169 ~~~~i~~~~ 177 (222)
+-+.+++.+
T Consensus 144 lAqRLL~~l 152 (176)
T PF11111_consen 144 LAQRLLRML 152 (176)
T ss_pred HHHHHHHHH
Confidence 655555543
No 402
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.84 E-value=6e-05 Score=56.49 Aligned_cols=80 Identities=18% Similarity=0.112 Sum_probs=43.1
Q ss_pred EEEEEEeCCCcchhhhh-----HHHhhcCCCEEEEEEECCChhhHHHHHH-HHHHHHhcCCCCCcEEEEEeCCCCCcCCC
Q 040481 65 VKAQIWDTAGQERFRAV-----TSAYYRGAVGALIVYDITRRTTFDSISR-WLDELKTHSDTTVARMLVGNKCDLESIRN 138 (222)
Q Consensus 65 ~~~~i~D~~G~~~~~~~-----~~~~~~~~d~vi~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~ 138 (222)
....++++.|....... .....-..+.+|.|+|+........+.. +...+.... +||+||.|+.+..
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD------vIvlnK~D~~~~~- 157 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD------VIVLNKIDLVSDE- 157 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S------EEEEE-GGGHHHH-
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC------EEEEeccccCChh-
Confidence 45567888885554433 1111344688999999976543333322 333332222 8999999997644
Q ss_pred CCHHHHHHHHHHc
Q 040481 139 VSTEEGKSLAEAE 151 (222)
Q Consensus 139 ~~~~~~~~~~~~~ 151 (222)
...+..++..+..
T Consensus 158 ~~i~~~~~~ir~l 170 (178)
T PF02492_consen 158 QKIERVREMIREL 170 (178)
T ss_dssp --HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 2224444454444
No 403
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.00011 Score=56.96 Aligned_cols=114 Identities=21% Similarity=0.314 Sum_probs=68.5
Q ss_pred EEEEEEcCCCC--CHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEE--EEEeCCCcchhhhhHHHhhcCCCEE
Q 040481 17 FKIVIIGDSAV--GKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKA--QIWDTAGQERFRAVTSAYYRGAVGA 92 (222)
Q Consensus 17 ~~i~i~G~~~~--GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~D~~G~~~~~~~~~~~~~~~d~v 92 (222)
+-++++|-+|+ ||.+|+.+|....+.........+++.. +.++++.+.. .+.-.+--+++.-..........++
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hg--wtid~kyysadi~lcishicde~~lpn~~~a~pl~a~ 82 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHG--WTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAF 82 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeec--eEecceeeecceeEEeecccchhccCCcccccceeeE
Confidence 45789999999 9999999998877755544333333333 2334443322 1211111112211112223455789
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCcE-EEEEeCCCCCc
Q 040481 93 LIVYDITRRTTFDSISRWLDELKTHSDTTVAR-MLVGNKCDLES 135 (222)
Q Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-iiv~nK~Dl~~ 135 (222)
+.|||.+....+..+..|+..... ....+ +.++||.|-+.
T Consensus 83 vmvfdlse~s~l~alqdwl~htdi---nsfdillcignkvdrvp 123 (418)
T KOG4273|consen 83 VMVFDLSEKSGLDALQDWLPHTDI---NSFDILLCIGNKVDRVP 123 (418)
T ss_pred EEEEeccchhhhHHHHhhcccccc---ccchhheeccccccccc
Confidence 999999999999999999764322 22333 45689999754
No 404
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.84 E-value=0.00039 Score=56.84 Aligned_cols=144 Identities=19% Similarity=0.172 Sum_probs=78.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCC------CCCCcccee--------------EEEEEEEEC---------------C
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNP------HSKATIGVE--------------FQTQSMEID---------------G 62 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~------~~~~~~~~~--------------~~~~~~~~~---------------~ 62 (222)
-.+|-|.-|+|||||++.++...... +.-...+++ ....-+-|. .
T Consensus 3 VtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~ 82 (323)
T COG0523 3 VTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRR 82 (323)
T ss_pred EEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhcc
Confidence 35778999999999999997754310 000001111 111111111 1
Q ss_pred eEEEEEEEeCCCcchhhhhHHHhhc--------CCCEEEEEEECCChhhHHH-HHH-HHHHHHhcCCCCCcEEEEEeCCC
Q 040481 63 KEVKAQIWDTAGQERFRAVTSAYYR--------GAVGALIVYDITRRTTFDS-ISR-WLDELKTHSDTTVARMLVGNKCD 132 (222)
Q Consensus 63 ~~~~~~i~D~~G~~~~~~~~~~~~~--------~~d~vi~v~d~~~~~s~~~-~~~-~~~~i~~~~~~~~p~iiv~nK~D 132 (222)
......++++.|..........+.. ..|++|-|+|+..-..... ... ....+.. .=+||+||.|
T Consensus 83 ~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~------AD~ivlNK~D 156 (323)
T COG0523 83 DRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF------ADVIVLNKTD 156 (323)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh------CcEEEEeccc
Confidence 1234568899997666444444333 3478999999977543222 222 2222222 2289999999
Q ss_pred CCcCCCCCHHHHHHHHHHcC--CeEEEEccCCCCCHHHHH
Q 040481 133 LESIRNVSTEEGKSLAEAEG--LFFMETSALDSTNVKSAF 170 (222)
Q Consensus 133 l~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~i~~~~ 170 (222)
+.+... .+..+......+ +++++++.. +....+++
T Consensus 157 lv~~~~--l~~l~~~l~~lnp~A~i~~~~~~-~~~~~~ll 193 (323)
T COG0523 157 LVDAEE--LEALEARLRKLNPRARIIETSYG-DVDLAELL 193 (323)
T ss_pred CCCHHH--HHHHHHHHHHhCCCCeEEEcccc-CCCHHHhh
Confidence 987553 444455555554 668877763 33344443
No 405
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.82 E-value=0.00014 Score=61.39 Aligned_cols=138 Identities=14% Similarity=0.131 Sum_probs=72.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCC---CCC---------CC-----------ccceeEEEEEEE-------ECCeEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFN---PHS---------KA-----------TIGVEFQTQSME-------IDGKEVK 66 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~---~~~---------~~-----------~~~~~~~~~~~~-------~~~~~~~ 66 (222)
-.|+++|+.|+||||++..|.+.... ... .. ..+..+....-. ..-....
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~d 271 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGKH 271 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCCC
Confidence 48999999999999999988653110 000 00 001111100000 0012235
Q ss_pred EEEEeCCCcchhhh----hHHHhh--cCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCC
Q 040481 67 AQIWDTAGQERFRA----VTSAYY--RGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVS 140 (222)
Q Consensus 67 ~~i~D~~G~~~~~~----~~~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~ 140 (222)
+.++||+|...... ....+. ....-.++|+|++... ..+.+++..... .+ .-=+|+||.|....
T Consensus 272 ~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~--~~~~~~~~~f~~---~~-~~~~I~TKlDEt~~---- 341 (420)
T PRK14721 272 MVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG--DTLDEVISAYQG---HG-IHGCIITKVDEAAS---- 341 (420)
T ss_pred EEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH--HHHHHHHHHhcC---CC-CCEEEEEeeeCCCC----
Confidence 67999999544222 222222 1234678999998542 222333332222 11 23588999997532
Q ss_pred HHHHHHHHHHcCCeEEEEccCCCCCH
Q 040481 141 TEEGKSLAEAEGLFFMETSALDSTNV 166 (222)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~sa~~~~~i 166 (222)
.-.+..++...+.++..++ +|.+|
T Consensus 342 ~G~~l~~~~~~~lPi~yvt--~Gq~V 365 (420)
T PRK14721 342 LGIALDAVIRRKLVLHYVT--NGQKV 365 (420)
T ss_pred ccHHHHHHHHhCCCEEEEE--CCCCc
Confidence 2234556777777765544 45566
No 406
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.79 E-value=0.0012 Score=55.11 Aligned_cols=155 Identities=17% Similarity=0.241 Sum_probs=80.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcC--CCCC-CCcc--------------------ceeEEEEEEEE-------CCeEE
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEF--NPHS-KATI--------------------GVEFQTQSMEI-------DGKEV 65 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~--~~~~-~~~~--------------------~~~~~~~~~~~-------~~~~~ 65 (222)
.-.|++|||.||||||-+-.|..... .... ...+ +.++....-.- .-..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 44689999999999999988866543 1111 0111 11111110000 01345
Q ss_pred EEEEEeCCCcchhhhh----HHHhhcCC--CEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC
Q 040481 66 KAQIWDTAGQERFRAV----TSAYYRGA--VGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNV 139 (222)
Q Consensus 66 ~~~i~D~~G~~~~~~~----~~~~~~~~--d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~ 139 (222)
.+.++||.|...++.. ...++..+ .-+.+|++++.. ...+.+.+..+... ++ -=+|+||.|...
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~---~i-~~~I~TKlDET~---- 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF---PI-DGLIFTKLDETT---- 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC---Cc-ceeEEEcccccC----
Confidence 6889999997665443 33333333 346788888776 33444444433222 11 147899999653
Q ss_pred CHHHHHHHHHHcCCe--EEEEccCCCCCHHHH-HHHHHHHHHHH
Q 040481 140 STEEGKSLAEAEGLF--FMETSALDSTNVKSA-FEIVIREIYSN 180 (222)
Q Consensus 140 ~~~~~~~~~~~~~~~--~~~~sa~~~~~i~~~-~~~i~~~~~~~ 180 (222)
..-..-..+...+.| |+..-..-.++|... -+++++.+..-
T Consensus 353 s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~ 396 (407)
T COG1419 353 SLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGT 396 (407)
T ss_pred chhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhcc
Confidence 122233345555555 443333334444332 24556555544
No 407
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.79 E-value=0.00035 Score=58.34 Aligned_cols=140 Identities=19% Similarity=0.193 Sum_probs=74.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCC--------CC--CC-----------CccceeEEEEEEE------E---C-CeEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFN--------PH--SK-----------ATIGVEFQTQSME------I---D-GKEV 65 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~--------~~--~~-----------~~~~~~~~~~~~~------~---~-~~~~ 65 (222)
-.|+++|+.|+||||++..|...... .. +. ...+.++....-. + . ...+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~ 321 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 321 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCC
Confidence 57899999999999999998542110 00 00 0011111111000 0 0 0135
Q ss_pred EEEEEeCCCcchhhhh----HHHhh--cCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC
Q 040481 66 KAQIWDTAGQERFRAV----TSAYY--RGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNV 139 (222)
Q Consensus 66 ~~~i~D~~G~~~~~~~----~~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~ 139 (222)
.+.|+||+|....... ...++ ...+.+++|+|++-.. ..+......+.. .+ .-=+|+||.|....
T Consensus 322 DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~---~~-idglI~TKLDET~k--- 392 (436)
T PRK11889 322 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD---IH-IDGIVFTKFDETAS--- 392 (436)
T ss_pred CEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcC---CC-CCEEEEEcccCCCC---
Confidence 6789999996442221 22233 2346789999986542 222233333322 11 23688999997642
Q ss_pred CHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 040481 140 STEEGKSLAEAEGLFFMETSALDSTNVKS 168 (222)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 168 (222)
.=.+..++...++|+..++ +|.+|.+
T Consensus 393 -~G~iLni~~~~~lPIsyit--~GQ~VPe 418 (436)
T PRK11889 393 -SGELLKIPAVSSAPIVLMT--DGQDVKK 418 (436)
T ss_pred -ccHHHHHHHHHCcCEEEEe--CCCCCCc
Confidence 2234556777787755443 3444444
No 408
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=6.7e-05 Score=64.74 Aligned_cols=119 Identities=20% Similarity=0.186 Sum_probs=80.7
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCC-----CCCC-----------CccceeEEEEEEEECCeEEEEEEEeCCCc
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFN-----PHSK-----------ATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~-----~~~~-----------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 75 (222)
+....-+|.+.-.-.+||||+-.+.+..... .... ...++++...-..+....+.++++||||+
T Consensus 35 ~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGH 114 (721)
T KOG0465|consen 35 PLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGH 114 (721)
T ss_pred chhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCc
Confidence 3344568899999999999999887543211 1111 11134444444444555778999999999
Q ss_pred chhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040481 76 ERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134 (222)
Q Consensus 76 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~ 134 (222)
-.|-......++-.|+.++|+++..+-.-.....|.+ ....++|.+..+||+|-.
T Consensus 115 vDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ----~~ry~vP~i~FiNKmDRm 169 (721)
T KOG0465|consen 115 VDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQ----MKRYNVPRICFINKMDRM 169 (721)
T ss_pred eeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHH----HHhcCCCeEEEEehhhhc
Confidence 8887666677888999999999877654333334433 334568999999999964
No 409
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.76 E-value=0.00078 Score=55.17 Aligned_cols=95 Identities=8% Similarity=0.053 Sum_probs=51.7
Q ss_pred EEEEEEeCCCcchhhhhHHHhhc--------CCCEEEEEEECCChhhHH-HHHHHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040481 65 VKAQIWDTAGQERFRAVTSAYYR--------GAVGALIVYDITRRTTFD-SISRWLDELKTHSDTTVARMLVGNKCDLES 135 (222)
Q Consensus 65 ~~~~i~D~~G~~~~~~~~~~~~~--------~~d~vi~v~d~~~~~s~~-~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 135 (222)
....++++.|..........++. ..+++|.|+|+.+..... ........+.. .=+||+||+|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~------AD~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY------ADRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh------CCEEEEeccccCC
Confidence 34568899997766555544422 247899999997643211 11111122222 1289999999975
Q ss_pred CCCCCHHHHHHHHHHc--CCeEEEEccCCCCCHHHHH
Q 040481 136 IRNVSTEEGKSLAEAE--GLFFMETSALDSTNVKSAF 170 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~~--~~~~~~~sa~~~~~i~~~~ 170 (222)
.. +.+....... .++++.+. ........+|
T Consensus 165 ~~----~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~ 196 (318)
T PRK11537 165 EA----EKLRERLARINARAPVYTVV-HGDIDLSLLF 196 (318)
T ss_pred HH----HHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence 32 3444455544 35566544 2223444444
No 410
>PRK10867 signal recognition particle protein; Provisional
Probab=97.75 E-value=0.00031 Score=59.73 Aligned_cols=86 Identities=15% Similarity=0.032 Sum_probs=47.2
Q ss_pred EEEEEEEeCCCcchhhhh----HHHh--hcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCC
Q 040481 64 EVKAQIWDTAGQERFRAV----TSAY--YRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIR 137 (222)
Q Consensus 64 ~~~~~i~D~~G~~~~~~~----~~~~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~ 137 (222)
.+.+.|+||+|....+.. ...+ .-..+.+++|+|+..++. +......+.... + ..-+|.||.|....-
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~---av~~a~~F~~~~--~-i~giIlTKlD~~~rg 256 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQD---AVNTAKAFNEAL--G-LTGVILTKLDGDARG 256 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHH---HHHHHHHHHhhC--C-CCEEEEeCccCcccc
Confidence 356789999995432211 1111 124678899999976543 222223332211 1 235778999964321
Q ss_pred CCCHHHHHHHHHHcCCeEEEEc
Q 040481 138 NVSTEEGKSLAEAEGLFFMETS 159 (222)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~s 159 (222)
. .+.......++|+..+.
T Consensus 257 G----~alsi~~~~~~PI~fig 274 (433)
T PRK10867 257 G----AALSIRAVTGKPIKFIG 274 (433)
T ss_pred c----HHHHHHHHHCcCEEEEe
Confidence 1 25556677777765544
No 411
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.75 E-value=0.00023 Score=60.63 Aligned_cols=135 Identities=19% Similarity=0.115 Sum_probs=70.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCc----C------CCCCCCc-----------cceeEEEEEEEEC-----------C
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNE----F------NPHSKAT-----------IGVEFQTQSMEID-----------G 62 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~----~------~~~~~~~-----------~~~~~~~~~~~~~-----------~ 62 (222)
....|+++|++|+||||++..|...- . ...+.+. .+.++.......+ .
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 35678999999999999998874311 0 0011110 0111111100000 0
Q ss_pred eEEEEEEEeCCCcchhhhhH----H--HhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcC
Q 040481 63 KEVKAQIWDTAGQERFRAVT----S--AYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESI 136 (222)
Q Consensus 63 ~~~~~~i~D~~G~~~~~~~~----~--~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~ 136 (222)
....+.++||+|........ . ..+..+|.+++|+|++.++. .......+....+ ..-+|+||.|....
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~---av~~a~~F~~~l~---i~gvIlTKlD~~a~ 247 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQ---AKNQAKAFHEAVG---IGGIIITKLDGTAK 247 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHH---HHHHHHHHHhcCC---CCEEEEecccCCCc
Confidence 12367899999965433221 1 12345789999999977642 1122222222111 23577899996431
Q ss_pred CCCCHHHHHHHHHHcCCeEEEEc
Q 040481 137 RNVSTEEGKSLAEAEGLFFMETS 159 (222)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~s 159 (222)
. =.+.......+.|+..++
T Consensus 248 --~--G~~ls~~~~~~~Pi~fig 266 (437)
T PRK00771 248 --G--GGALSAVAETGAPIKFIG 266 (437)
T ss_pred --c--cHHHHHHHHHCcCEEEEe
Confidence 1 223445566666654443
No 412
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=5.7e-05 Score=62.24 Aligned_cols=160 Identities=18% Similarity=0.109 Sum_probs=96.5
Q ss_pred CCceeeEEEEEEcCCCCCHHHHHHHHhcCcCC-------------------CCC----------CCccceeEEEEEEEEC
Q 040481 11 GGEEYLFKIVIIGDSAVGKSNLLSRYARNEFN-------------------PHS----------KATIGVEFQTQSMEID 61 (222)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~-------------------~~~----------~~~~~~~~~~~~~~~~ 61 (222)
.++...+++.++|.-.+||||+-..++..... ..| ...-+-+..+....+.
T Consensus 74 ~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE 153 (501)
T KOG0459|consen 74 EYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE 153 (501)
T ss_pred CCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE
Confidence 45566789999999999999987655321100 000 0001233444444455
Q ss_pred CeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhh---HHHHHHH--HHHHHhcCCCCCcEEEEEeCCCCCc-
Q 040481 62 GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTT---FDSISRW--LDELKTHSDTTVARMLVGNKCDLES- 135 (222)
Q Consensus 62 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s---~~~~~~~--~~~i~~~~~~~~p~iiv~nK~Dl~~- 135 (222)
....++.+.|+||+..|-........++|..++|+++.-.+. |+.-.+- ...+.. ...-...|+++||+|-+.
T Consensus 154 te~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lak-t~gv~~lVv~vNKMddPtv 232 (501)
T KOG0459|consen 154 TENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK-TAGVKHLIVLINKMDDPTV 232 (501)
T ss_pred ecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHH-hhccceEEEEEEeccCCcc
Confidence 556678899999999987777777788999999999855432 3333111 122211 122346688899999653
Q ss_pred -CCCCCHHH----HHHHHHHc------CCeEEEEccCCCCCHHHHHH
Q 040481 136 -IRNVSTEE----GKSLAEAE------GLFFMETSALDSTNVKSAFE 171 (222)
Q Consensus 136 -~~~~~~~~----~~~~~~~~------~~~~~~~sa~~~~~i~~~~~ 171 (222)
......++ ...|.... ...|+++|..+|.++.+...
T Consensus 233 nWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 233 NWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred CcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 12222222 22333322 24599999999999988653
No 413
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.70 E-value=0.0003 Score=47.61 Aligned_cols=82 Identities=20% Similarity=0.187 Sum_probs=49.3
Q ss_pred EEEEc-CCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEE
Q 040481 19 IVIIG-DSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYD 97 (222)
Q Consensus 19 i~i~G-~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d 97 (222)
|.+.| ..|+||||+...|...-.. ...+. ..+..+. .+.+.++|+|+..... ....+..+|.+|++++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~v-------l~~d~d~-~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRV-------LLIDLDP-QYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcE-------EEEeCCC-CCCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence 45666 6699999998776443211 11111 1111111 1567899999864332 3366788999999998
Q ss_pred CCChhhHHHHHHHHH
Q 040481 98 ITRRTTFDSISRWLD 112 (222)
Q Consensus 98 ~~~~~s~~~~~~~~~ 112 (222)
.+ ..++..+..+++
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 74 445666666554
No 414
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.68 E-value=0.00046 Score=58.65 Aligned_cols=87 Identities=15% Similarity=0.030 Sum_probs=48.8
Q ss_pred EEEEEEEeCCCcchhhhhHHH------hhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCC
Q 040481 64 EVKAQIWDTAGQERFRAVTSA------YYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIR 137 (222)
Q Consensus 64 ~~~~~i~D~~G~~~~~~~~~~------~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~ 137 (222)
.+.+.++||+|....+..... ..-..+.+++|+|+..++. ...+...+..... ..=+|.||.|....-
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~---~~~~a~~f~~~v~---i~giIlTKlD~~~~~ 255 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQD---AVNTAKTFNERLG---LTGVVLTKLDGDARG 255 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHH---HHHHHHHHHhhCC---CCEEEEeCccCcccc
Confidence 356789999995433221111 1234688999999976542 2223333332221 235779999964321
Q ss_pred CCCHHHHHHHHHHcCCeEEEEcc
Q 040481 138 NVSTEEGKSLAEAEGLFFMETSA 160 (222)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~sa 160 (222)
. .+...+...++|+..+..
T Consensus 256 G----~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 256 G----AALSVRSVTGKPIKFIGV 274 (428)
T ss_pred c----HHHHHHHHHCcCEEEEeC
Confidence 1 256667777777655443
No 415
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.68 E-value=0.0011 Score=56.44 Aligned_cols=90 Identities=18% Similarity=0.141 Sum_probs=51.1
Q ss_pred EEEEEEeCCCcchhh----hhHHHhhc---CCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCC
Q 040481 65 VKAQIWDTAGQERFR----AVTSAYYR---GAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIR 137 (222)
Q Consensus 65 ~~~~i~D~~G~~~~~----~~~~~~~~---~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~ 137 (222)
+.+.++|++|....+ .....++. ...-+++|++++-.. ..+...+..+.. .+ +--+|+||.|....
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f~~---~~-~~~vI~TKlDet~~- 372 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHFSR---LP-LDGLIFTKLDETSS- 372 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHhCC---CC-CCEEEEeccccccc-
Confidence 567899999964432 22333333 234678889986552 222222222222 11 22588999997532
Q ss_pred CCCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 040481 138 NVSTEEGKSLAEAEGLFFMETSALDSTNV 166 (222)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 166 (222)
.-.+..+....+.|+..++ +|.+|
T Consensus 373 ---~G~i~~~~~~~~lPv~yit--~Gq~V 396 (424)
T PRK05703 373 ---LGSILSLLIESGLPISYLT--NGQRV 396 (424)
T ss_pred ---ccHHHHHHHHHCCCEEEEe--CCCCC
Confidence 2246667788888866554 44554
No 416
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.64 E-value=0.00046 Score=49.01 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.-+++.|++|+|||+|++.+....
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999997754
No 417
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.58 E-value=0.00035 Score=50.11 Aligned_cols=107 Identities=15% Similarity=0.149 Sum_probs=60.8
Q ss_pred EEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECC
Q 040481 20 VIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDIT 99 (222)
Q Consensus 20 ~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~ 99 (222)
+.-|.+|+|||++.-.+...-. ..-....-.+.+.. .....+.+.++|+|+.. .......+..+|.++++.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D~~---~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALA-KLGKRVLLLDADLG---LANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECCCC---CCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence 4568899999999766633211 00000000111100 01111567899999743 333456788999999999986
Q ss_pred ChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040481 100 RRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLE 134 (222)
Q Consensus 100 ~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~ 134 (222)
.. ++..+...++.+.... ...++.+|+|+.+..
T Consensus 78 ~~-s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~ 110 (139)
T cd02038 78 PT-SITDAYALIKKLAKQL-RVLNFRVVVNRAESP 110 (139)
T ss_pred hh-HHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence 43 4444444455554332 334677999998743
No 418
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.56 E-value=0.0018 Score=48.51 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++++|++|+|||||++.+.+..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 68999999999999999998754
No 419
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.56 E-value=0.00042 Score=48.72 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 040481 19 IVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~~ 40 (222)
|++.|++|+|||++++.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999997653
No 420
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.53 E-value=0.00086 Score=56.54 Aligned_cols=133 Identities=18% Similarity=0.208 Sum_probs=69.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCc-CCCC-------CCC--------------ccceeEEEEEEE------ECCeEEEEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNE-FNPH-------SKA--------------TIGVEFQTQSME------IDGKEVKAQ 68 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~-~~~~-------~~~--------------~~~~~~~~~~~~------~~~~~~~~~ 68 (222)
..++++|++||||||++..|.... .... .++ ..+.++...... +....+.+.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 468899999999999999986421 1000 000 011112111000 011245677
Q ss_pred EEeCCCcchhh----hhHHHhhc-----CCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC
Q 040481 69 IWDTAGQERFR----AVTSAYYR-----GAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNV 139 (222)
Q Consensus 69 i~D~~G~~~~~----~~~~~~~~-----~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~ 139 (222)
++||+|..... ..+..++. ...-+++|+|++... +.+...+..... .+ +-=+|+||.|-... .
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~---~~-~~glIlTKLDEt~~--~ 375 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYES---LN-YRRILLTKLDEADF--L 375 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcC---CC-CCEEEEEcccCCCC--c
Confidence 99999964321 12222222 134688999998774 222222222211 11 23689999997532 1
Q ss_pred CHHHHHHHHHHcCCeEEEEc
Q 040481 140 STEEGKSLAEAEGLFFMETS 159 (222)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~s 159 (222)
=.+...+...+.|+..++
T Consensus 376 --G~il~i~~~~~lPI~ylt 393 (432)
T PRK12724 376 --GSFLELADTYSKSFTYLS 393 (432)
T ss_pred --cHHHHHHHHHCCCEEEEe
Confidence 224556777787765444
No 421
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.52 E-value=0.0014 Score=52.37 Aligned_cols=140 Identities=20% Similarity=0.197 Sum_probs=74.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCCC----------CC-----------CCccceeEEEEEEE---------E-CCeEE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFNP----------HS-----------KATIGVEFQTQSME---------I-DGKEV 65 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~----------~~-----------~~~~~~~~~~~~~~---------~-~~~~~ 65 (222)
-+++++|++|+||||++..+....... .+ ....+.++....-. . ....+
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 155 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 155 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence 589999999999999998885431100 00 00011111110000 0 00145
Q ss_pred EEEEEeCCCcchhhhh----HHHhh--cCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC
Q 040481 66 KAQIWDTAGQERFRAV----TSAYY--RGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNV 139 (222)
Q Consensus 66 ~~~i~D~~G~~~~~~~----~~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~ 139 (222)
.+.++|++|....+.. +..++ ...+-+++|+|++... ..+..++..+.. .+ +-=+|+||.|....
T Consensus 156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~---~~-~~~~I~TKlDet~~--- 226 (270)
T PRK06731 156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD---IH-IDGIVFTKFDETAS--- 226 (270)
T ss_pred CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC---CC-CCEEEEEeecCCCC---
Confidence 6789999996533211 22222 2346789999987542 222333333322 11 23688999997642
Q ss_pred CHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 040481 140 STEEGKSLAEAEGLFFMETSALDSTNVKS 168 (222)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 168 (222)
.-.+..++...+.|+..++ +|.+|.+
T Consensus 227 -~G~~l~~~~~~~~Pi~~it--~Gq~vp~ 252 (270)
T PRK06731 227 -SGELLKIPAVSSAPIVLMT--DGQDVKK 252 (270)
T ss_pred -ccHHHHHHHHHCcCEEEEe--CCCCCCc
Confidence 2234556777787765443 3444543
No 422
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.51 E-value=0.00093 Score=55.60 Aligned_cols=141 Identities=16% Similarity=0.187 Sum_probs=72.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCcCC----------CCCCCc-----------cceeEEEEEEE--E-------C-CeE
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNEFN----------PHSKAT-----------IGVEFQTQSME--I-------D-GKE 64 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~----------~~~~~~-----------~~~~~~~~~~~--~-------~-~~~ 64 (222)
.-.++++|+.|+||||++..|...... ..+... .+..+....-. + . ...
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~ 285 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNC 285 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCC
Confidence 346899999999999999988542100 001000 11111111000 0 0 013
Q ss_pred EEEEEEeCCCcchhhhh----HHHhhc--CCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC
Q 040481 65 VKAQIWDTAGQERFRAV----TSAYYR--GAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRN 138 (222)
Q Consensus 65 ~~~~i~D~~G~~~~~~~----~~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~ 138 (222)
+.+.++||+|....+.. ...+.. ..+.+++|.++... ...+...+.... ..+ +--+|+||.|....
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~~i~~~f~---~l~-i~glI~TKLDET~~-- 357 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVMTILPKLA---EIP-IDGFIITKMDETTR-- 357 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHHHHHHhcC---cCC-CCEEEEEcccCCCC--
Confidence 56789999997443222 222222 33566777776433 223333333222 111 23688999997532
Q ss_pred CCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 040481 139 VSTEEGKSLAEAEGLFFMETSALDSTNVKS 168 (222)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 168 (222)
.=.+..++...+.|+..++ +|.+|++
T Consensus 358 --~G~~Lsv~~~tglPIsylt--~GQ~Vpd 383 (407)
T PRK12726 358 --IGDLYTVMQETNLPVLYMT--DGQNITE 383 (407)
T ss_pred --ccHHHHHHHHHCCCEEEEe--cCCCCCc
Confidence 2234557777888865554 3444443
No 423
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.50 E-value=0.0019 Score=58.34 Aligned_cols=152 Identities=12% Similarity=0.102 Sum_probs=78.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC-CCC--C-------CCc-------------cceeEEEEEE-------EECCeEEEE
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEF-NPH--S-------KAT-------------IGVEFQTQSM-------EIDGKEVKA 67 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~-~~~--~-------~~~-------------~~~~~~~~~~-------~~~~~~~~~ 67 (222)
-|+++|+.||||||++..|.+... ... . ... .+.++....- .-....+.+
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~ 266 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHL 266 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCE
Confidence 679999999999999999875431 000 0 000 0111111000 000123457
Q ss_pred EEEeCCCcchhhhh----HHHh--hcCCCEEEEEEECCCh-hhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCC
Q 040481 68 QIWDTAGQERFRAV----TSAY--YRGAVGALIVYDITRR-TTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVS 140 (222)
Q Consensus 68 ~i~D~~G~~~~~~~----~~~~--~~~~d~vi~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~ 140 (222)
.|+||+|....+.. .... ....+-+++|+|++.. +.+..+.+.+... ...+ +-=+|+||.|....
T Consensus 267 VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~---~~~~-i~glIlTKLDEt~~---- 338 (767)
T PRK14723 267 VLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHG---AGED-VDGCIITKLDEATH---- 338 (767)
T ss_pred EEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhc---ccCC-CCEEEEeccCCCCC----
Confidence 89999994332211 1111 1234568899999754 3344433333221 1111 23588999997632
Q ss_pred HHHHHHHHHHcCCeEEEEccCCCCCH-HHHH----HHHHHHHHH
Q 040481 141 TEEGKSLAEAEGLFFMETSALDSTNV-KSAF----EIVIREIYS 179 (222)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~sa~~~~~i-~~~~----~~i~~~~~~ 179 (222)
.=.+..+....++|+..++ +|.+| +++. +.+++.++.
T Consensus 339 ~G~iL~i~~~~~lPI~yit--~GQ~VPdDL~~a~~~~lv~~ll~ 380 (767)
T PRK14723 339 LGPALDTVIRHRLPVHYVS--TGQKVPEHLELAQADELVDRAFA 380 (767)
T ss_pred ccHHHHHHHHHCCCeEEEe--cCCCChhhcccCCHHHHHHHHhc
Confidence 2234556777787765554 45666 3432 345555553
No 424
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.43 E-value=0.00016 Score=59.60 Aligned_cols=60 Identities=27% Similarity=0.400 Sum_probs=43.0
Q ss_pred CCceeeEEEEEEcCCCCCHHHHHHHHhcCcCCC-CCCCccceeEEEEEEEECCeEEEEEEEeCCCc
Q 040481 11 GGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNP-HSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ 75 (222)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 75 (222)
......++|.|+|-|++||||+||+|....... ...| |++.....+..+. .+.|+|.||.
T Consensus 247 ~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~p--GvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 247 GELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVP--GVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred cccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCc--cchhhhhheeccC---CceeccCCce
Confidence 345677999999999999999999998887633 2333 3444445554443 3669999994
No 425
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.43 E-value=0.0039 Score=52.40 Aligned_cols=138 Identities=13% Similarity=0.113 Sum_probs=74.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcCC--------------CCCC-----------CccceeEEEEEEE-------ECCeE
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEFN--------------PHSK-----------ATIGVEFQTQSME-------IDGKE 64 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~--------------~~~~-----------~~~~~~~~~~~~~-------~~~~~ 64 (222)
..|+++|+.|+||||.+..|...... ..+. ...+.++...... -....
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~~ 254 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSKD 254 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhCC
Confidence 47899999999999999888542110 0000 0012222211110 00134
Q ss_pred EEEEEEeCCCcchhhh----hHHHhhcCC--C-EEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCC
Q 040481 65 VKAQIWDTAGQERFRA----VTSAYYRGA--V-GALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIR 137 (222)
Q Consensus 65 ~~~~i~D~~G~~~~~~----~~~~~~~~~--d-~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~ 137 (222)
+.+.++||+|....+. ....++... + -+++|+|++... ..+.+.+...... + +-=+|+||.|....
T Consensus 255 ~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~~---~-~~~~I~TKlDet~~- 327 (388)
T PRK12723 255 FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSPF---S-YKTVIFTKLDETTC- 327 (388)
T ss_pred CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcCC---C-CCEEEEEeccCCCc-
Confidence 5678999999543221 222333322 3 588999998773 2333333333221 1 33688999997532
Q ss_pred CCCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 040481 138 NVSTEEGKSLAEAEGLFFMETSALDSTNV 166 (222)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 166 (222)
.=.+..++...+.|+..++ +|.+|
T Consensus 328 ---~G~~l~~~~~~~~Pi~yit--~Gq~v 351 (388)
T PRK12723 328 ---VGNLISLIYEMRKEVSYVT--DGQIV 351 (388)
T ss_pred ---chHHHHHHHHHCCCEEEEe--CCCCC
Confidence 2234556777777765443 45666
No 426
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.41 E-value=0.00075 Score=40.13 Aligned_cols=45 Identities=20% Similarity=0.147 Sum_probs=31.3
Q ss_pred cCCCEEEEEEECC--ChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCC
Q 040481 87 RGAVGALIVYDIT--RRTTFDSISRWLDELKTHSDTTVARMLVGNKCD 132 (222)
Q Consensus 87 ~~~d~vi~v~d~~--~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D 132 (222)
+-.++++|++|++ .+.+.+....++..++..-. +.|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence 4468999999996 46788888888888877653 579999999998
No 427
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.40 E-value=0.00074 Score=47.92 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEF 41 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~ 41 (222)
-|++.|+.|+|||||++.+.....
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999987643
No 428
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.40 E-value=0.00019 Score=54.63 Aligned_cols=23 Identities=48% Similarity=0.549 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.|+|+||+|||||||++++-+.+
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 68999999999999999997755
No 429
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.39 E-value=0.00035 Score=55.92 Aligned_cols=62 Identities=21% Similarity=0.340 Sum_probs=38.7
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCC----CCCccceeEEEEE-EEECCeEEEEEEEeCCCc
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNEFNPH----SKATIGVEFQTQS-MEIDGKEVKAQIWDTAGQ 75 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~ 75 (222)
....+.|.|+|-|++|||||+|++........ --...|.+..+.. +.+.... .+.++||||.
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence 34568999999999999999999855433211 1122333444443 3333222 3679999994
No 430
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.39 E-value=0.0018 Score=42.68 Aligned_cols=69 Identities=23% Similarity=0.188 Sum_probs=44.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhh-HHHhhcCCCEEEEEEE
Q 040481 19 IVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAV-TSAYYRGAVGALIVYD 97 (222)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~d~vi~v~d 97 (222)
+++.|..|+||||+...+...-... +. ....++ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~------g~----~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR------GK----RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC------CC----eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 6788999999999998886543211 11 111112 4679999986543321 2455677899999998
Q ss_pred CCCh
Q 040481 98 ITRR 101 (222)
Q Consensus 98 ~~~~ 101 (222)
....
T Consensus 68 ~~~~ 71 (99)
T cd01983 68 PEAL 71 (99)
T ss_pred Cchh
Confidence 7654
No 431
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.38 E-value=0.0032 Score=54.24 Aligned_cols=151 Identities=15% Similarity=0.180 Sum_probs=76.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCC--C-C------CCc--------------cceeEEEEEEE-------ECCeEEEE
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNP--H-S------KAT--------------IGVEFQTQSME-------IDGKEVKA 67 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~--~-~------~~~--------------~~~~~~~~~~~-------~~~~~~~~ 67 (222)
-++++|+.|+||||++..|.+..... . . ++. .+.......-. ..-.....
T Consensus 258 Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d~ 337 (484)
T PRK06995 258 VFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKHI 337 (484)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCCe
Confidence 58999999999999999986532100 0 0 000 01111100000 00012346
Q ss_pred EEEeCCCcchhhh---hHHHhhcC---CCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCH
Q 040481 68 QIWDTAGQERFRA---VTSAYYRG---AVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVST 141 (222)
Q Consensus 68 ~i~D~~G~~~~~~---~~~~~~~~---~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~ 141 (222)
.++|++|....+. .....+.. ..-.++|+|++... ..+.+....+.. .. .--+|+||.|... ..
T Consensus 338 VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~~~f~~---~~-~~g~IlTKlDet~----~~ 407 (484)
T PRK06995 338 VLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVVQAYRG---PG-LAGCILTKLDEAA----SL 407 (484)
T ss_pred EEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHHHHhcc---CC-CCEEEEeCCCCcc----cc
Confidence 7999999443321 11122222 22368899997553 222222222222 22 3357889999653 22
Q ss_pred HHHHHHHHHcCCeEEEEccCCCCCH-HHHH----HHHHHHHHHH
Q 040481 142 EEGKSLAEAEGLFFMETSALDSTNV-KSAF----EIVIREIYSN 180 (222)
Q Consensus 142 ~~~~~~~~~~~~~~~~~sa~~~~~i-~~~~----~~i~~~~~~~ 180 (222)
-.+..+....++++..++ +|.+| +++. +.+++.++..
T Consensus 408 G~~l~i~~~~~lPI~yvt--~GQ~VPeDL~~a~~~~lv~~ll~~ 449 (484)
T PRK06995 408 GGALDVVIRYKLPLHYVS--NGQRVPEDLHLANKKFLLHRAFCA 449 (484)
T ss_pred hHHHHHHHHHCCCeEEEe--cCCCChhhhccCCHHHHHHHHhcC
Confidence 345567777787765543 56666 4432 3455555543
No 432
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.35 E-value=0.00018 Score=50.07 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999764
No 433
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.34 E-value=0.00016 Score=50.96 Aligned_cols=23 Identities=39% Similarity=0.588 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
-++|.|++|+|||++++.+....
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHh
Confidence 46899999999999999997653
No 434
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.34 E-value=0.0022 Score=47.67 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=24.7
Q ss_pred HHHHHHHcCCeEE--EEccCCCCCHHHHHHHHHHHHHHH
Q 040481 144 GKSLAEAEGLFFM--ETSALDSTNVKSAFEIVIREIYSN 180 (222)
Q Consensus 144 ~~~~~~~~~~~~~--~~sa~~~~~i~~~~~~i~~~~~~~ 180 (222)
++.++-+..+-+| ++||.+.+-+.+++.-+-+.+.+-
T Consensus 164 ARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEg 202 (256)
T COG4598 164 ARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEG 202 (256)
T ss_pred HHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhC
Confidence 3444444455555 699999999999998555544443
No 435
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.33 E-value=0.00024 Score=43.24 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
..+|.|+.|+|||||++++.---
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999986543
No 436
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.32 E-value=0.0081 Score=43.30 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 56899999999999999998754
No 437
>PRK04195 replication factor C large subunit; Provisional
Probab=97.32 E-value=0.0052 Score=53.41 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCc
Q 040481 16 LFKIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~ 40 (222)
..-++|.|++|+||||++++|....
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3468999999999999999997643
No 438
>PRK08118 topology modulation protein; Reviewed
Probab=97.32 E-value=0.0002 Score=53.10 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.+|+|+|++|||||||.+.|....
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 389999999999999999997643
No 439
>PRK10646 ADP-binding protein; Provisional
Probab=97.31 E-value=0.0018 Score=47.08 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEF 41 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~ 41 (222)
-|++-|+-|+|||||++.+...-.
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999976543
No 440
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.29 E-value=0.00022 Score=53.40 Aligned_cols=22 Identities=36% Similarity=0.700 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
+|+|+|+|||||||+.+.|...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999876
No 441
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.28 E-value=0.00063 Score=53.68 Aligned_cols=61 Identities=23% Similarity=0.472 Sum_probs=42.3
Q ss_pred eeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCC----CccceeEEEEEEEECCeEEEEEEEeCCC
Q 040481 14 EYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSK----ATIGVEFQTQSMEIDGKEVKAQIWDTAG 74 (222)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~G 74 (222)
...++|+.+|..|-|||||++.|.+-.+..... |............-.+..+++.++||.|
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 356899999999999999999999877643322 2222222222222255678899999999
No 442
>PRK07261 topology modulation protein; Provisional
Probab=97.27 E-value=0.00024 Score=52.93 Aligned_cols=22 Identities=45% Similarity=0.643 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
+|+|+|++|+|||||.+.|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998654
No 443
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.27 E-value=0.0022 Score=43.73 Aligned_cols=100 Identities=17% Similarity=0.101 Sum_probs=56.6
Q ss_pred EcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCCh
Q 040481 22 IGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRR 101 (222)
Q Consensus 22 ~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~ 101 (222)
=+..|+||||+...|...-.........-.+.+... . ..+.++|+|+.... .....+..+|.+|++++.+.
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~---~---~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~- 76 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF---G---DDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDL- 76 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCC---C---CCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCCh-
Confidence 467789999987766432211101111111111100 0 05679999985433 33456788999999987754
Q ss_pred hhHHHHHHHHHHHHhcCCC-CCcEEEEEeC
Q 040481 102 TTFDSISRWLDELKTHSDT-TVARMLVGNK 130 (222)
Q Consensus 102 ~s~~~~~~~~~~i~~~~~~-~~p~iiv~nK 130 (222)
.++..+..+++.+...... ...+.+|+|+
T Consensus 77 ~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 77 PSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 3456666666666655433 3456677774
No 444
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.26 E-value=0.0054 Score=50.78 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
-.+|.|..|+|||||++.++..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 6 VTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 4678899999999999999764
No 445
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.26 E-value=0.00023 Score=51.02 Aligned_cols=21 Identities=38% Similarity=0.637 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 040481 19 IVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~ 39 (222)
|+++|++|||||||++.|...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999743
No 446
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=97.24 E-value=0.0014 Score=47.04 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=23.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKAT 48 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~~~ 48 (222)
-|++-|+-|+|||||.+.+...-.......+
T Consensus 27 Vv~L~GdLGAGKTtf~rgi~~~Lg~~~~V~S 57 (149)
T COG0802 27 VVLLSGDLGAGKTTLVRGIAKGLGVDGNVKS 57 (149)
T ss_pred EEEEEcCCcCChHHHHHHHHHHcCCCCcccC
Confidence 5788899999999999999776543433333
No 447
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.23 E-value=0.00033 Score=54.47 Aligned_cols=23 Identities=43% Similarity=0.504 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
-|+|+|++|+|||||++.+.+-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999997754
No 448
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.20 E-value=0.00061 Score=57.95 Aligned_cols=115 Identities=20% Similarity=0.263 Sum_probs=72.5
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCcCC------CCCC--------CccceeEEEEEEE----------------ECCeE
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARNEFN------PHSK--------ATIGVEFQTQSME----------------IDGKE 64 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~------~~~~--------~~~~~~~~~~~~~----------------~~~~~ 64 (222)
+.-++.++.+...|||||-..|...... .+.. ...++++....+. -++.+
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~ 97 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG 97 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence 3346788899999999999998543211 0000 1111222111111 13456
Q ss_pred EEEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCC
Q 040481 65 VKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDL 133 (222)
Q Consensus 65 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl 133 (222)
+-++++|.||+-.|.+...+.++-.|+.++|+|..++--.+.-..+.+.+... -+| ++++||.|-
T Consensus 98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ER---IkP-vlv~NK~DR 162 (842)
T KOG0469|consen 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER---IKP-VLVMNKMDR 162 (842)
T ss_pred eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhh---ccc-eEEeehhhH
Confidence 77899999999999999999999999999999998763211111222333222 235 888999994
No 449
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.20 E-value=0.0007 Score=47.34 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEF 41 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~ 41 (222)
--|++-|+-|+|||||++.+...-.
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~lg 40 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARALG 40 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3588999999999999999976543
No 450
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.18 E-value=0.00031 Score=54.24 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
-|+|+||+|||||||++.+-+-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 47999999999999999886544
No 451
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.13 E-value=0.00039 Score=49.45 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.|.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 57999999999999999988754
No 452
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.10 E-value=0.00027 Score=52.62 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
=+++.||+|+|||||+++|+...
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 46889999999999999998766
No 453
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.09 E-value=0.00054 Score=42.85 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 040481 19 IVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~ 39 (222)
|++.|++|+||||+.++|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999999765
No 454
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.07 E-value=0.00045 Score=54.44 Aligned_cols=22 Identities=36% Similarity=0.363 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
-++|+||.|||||||++++.+-
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3689999999999999999773
No 455
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.0033 Score=52.00 Aligned_cols=97 Identities=15% Similarity=0.158 Sum_probs=54.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC----cCC------CCC-----------CCccceeEEEEEEEE-------------
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARN----EFN------PHS-----------KATIGVEFQTQSMEI------------- 60 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~----~~~------~~~-----------~~~~~~~~~~~~~~~------------- 60 (222)
..--|.++|-.|+||||.+-.|... .+. ... -...+++++..+...
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f 179 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF 179 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence 3346789999999999988766331 110 000 001123333322211
Q ss_pred CCeEEEEEEEeCCCcchhh-hhHH-----HhhcCCCEEEEEEECCChhhHHHHHHHH
Q 040481 61 DGKEVKAQIWDTAGQERFR-AVTS-----AYYRGAVGALIVYDITRRTTFDSISRWL 111 (222)
Q Consensus 61 ~~~~~~~~i~D~~G~~~~~-~~~~-----~~~~~~d~vi~v~d~~~~~s~~~~~~~~ 111 (222)
..+.+.+.|+||+|..... ++.. .-.-..|-+|+|.|++-++.-+...+-+
T Consensus 180 Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aF 236 (483)
T KOG0780|consen 180 KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAF 236 (483)
T ss_pred HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHH
Confidence 1255778899999943221 1111 1123468999999999888755554433
No 456
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.05 E-value=0.0043 Score=49.95 Aligned_cols=107 Identities=15% Similarity=0.237 Sum_probs=64.4
Q ss_pred CceeeEEEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCc----------------
Q 040481 12 GEEYLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQ---------------- 75 (222)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~---------------- 75 (222)
...+...++|+|+++.|||++++++....... .... . ..+.+..+.+|..
T Consensus 57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-~d~~-~------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ-SDED-A------------ERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred cccCCCceEEecCCCCcHHHHHHHHHHHCCCC-CCCC-C------------ccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 45566789999999999999999998744221 1111 1 1123444444431
Q ss_pred --------chhhhhHHHhhcCCCEEEEEEECCCh---hhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCC
Q 040481 76 --------ERFRAVTSAYYRGAVGALIVYDITRR---TTFDSISRWLDELKTHSD-TTVARMLVGNKCD 132 (222)
Q Consensus 76 --------~~~~~~~~~~~~~~d~vi~v~d~~~~---~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D 132 (222)
..........++....=++++|--+. .+.......++.++...+ ..+|+|.+|+.--
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A 191 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREA 191 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHH
Confidence 11122233566777888889987542 233444555565555443 6789999988643
No 457
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.0066 Score=51.25 Aligned_cols=28 Identities=32% Similarity=0.385 Sum_probs=23.7
Q ss_pred ceeeEEEEEEcCCCCCHHHHHHHHhcCc
Q 040481 13 EEYLFKIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.+..-+|+||||.|||||||+..|++..
T Consensus 610 iDmdSRiaIVGPNGVGKSTlLkLL~Gkl 637 (807)
T KOG0066|consen 610 IDMDSRIAIVGPNGVGKSTLLKLLIGKL 637 (807)
T ss_pred ccccceeEEECCCCccHHHHHHHHhcCC
Confidence 3455699999999999999999988754
No 458
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.02 E-value=0.0036 Score=47.75 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 040481 19 IVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~~ 40 (222)
|+|+|++|+||||+++++.+..
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999987654
No 459
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.01 E-value=0.013 Score=45.30 Aligned_cols=62 Identities=24% Similarity=0.245 Sum_probs=36.9
Q ss_pred EEEEEeC-CCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCC
Q 040481 66 KAQIWDT-AGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDL 133 (222)
Q Consensus 66 ~~~i~D~-~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl 133 (222)
.+.++|| +|.+.|. +...+.+|.+|.|+|.+-. ++....+......... -.++.+|+||.|-
T Consensus 135 e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~~-sl~taeri~~L~~elg--~k~i~~V~NKv~e 197 (255)
T COG3640 135 EVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSYK-SLRTAERIKELAEELG--IKRIFVVLNKVDE 197 (255)
T ss_pred cEEEEecccchhhhc---cccccCCCEEEEEeCCcHH-HHHHHHHHHHHHHHhC--CceEEEEEeeccc
Confidence 3456665 3333333 3356789999999999755 3333333322222222 2588999999984
No 460
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.01 E-value=0.00041 Score=51.10 Aligned_cols=22 Identities=36% Similarity=0.637 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999765
No 461
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.00 E-value=0.019 Score=42.24 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++++|++|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999998754
No 462
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.99 E-value=0.00063 Score=51.32 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.|+|+|++|+|||||++.|.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999996643
No 463
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.98 E-value=0.0014 Score=50.37 Aligned_cols=31 Identities=29% Similarity=0.351 Sum_probs=24.2
Q ss_pred CCCceeeEEEEEEcCCCCCHHHHHHHHhcCc
Q 040481 10 GGGEEYLFKIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~ 40 (222)
-..+....-|+|+|++|+|||||++.|....
T Consensus 7 ~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~~ 37 (206)
T PRK14738 7 FNKPAKPLLVVISGPSGVGKDAVLARMRERK 37 (206)
T ss_pred cCCCCCCeEEEEECcCCCCHHHHHHHHHhcC
Confidence 3344455678899999999999999997543
No 464
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.98 E-value=0.027 Score=41.69 Aligned_cols=84 Identities=12% Similarity=0.027 Sum_probs=50.6
Q ss_pred EEEEEeCCCcchhhhhHHHhhcCCCEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHH
Q 040481 66 KAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGK 145 (222)
Q Consensus 66 ~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~ 145 (222)
.+.++|+|+.... .....+..+|.+|++++.... ++..+..++..+.... .....+|+|+.+.... ...+...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~~--~~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEIS-SLRDADRVKGLLEALG--IKVVGVIVNRVRPDMV--EGGDMVE 136 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcc-hHHHHHHHHHHHHHcC--CceEEEEEeCCccccc--chhhHHH
Confidence 5779999975433 234556889999999988654 3455555555555422 1245688999986421 2222234
Q ss_pred HHHHHcCCeEE
Q 040481 146 SLAEAEGLFFM 156 (222)
Q Consensus 146 ~~~~~~~~~~~ 156 (222)
.+.+..+.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 45555666654
No 465
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.97 E-value=0.00066 Score=51.23 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.=|+|+||+|||||||+++|....
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 348999999999999999998753
No 466
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0012 Score=50.76 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 040481 19 IVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~~ 40 (222)
-+|+||.|+|||||.+.+.+..
T Consensus 33 haiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 33 HAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 4799999999999999998865
No 467
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.96 E-value=0.0055 Score=51.70 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~ 39 (222)
..++|.|++|+|||++++.+...
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~ 78 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEE 78 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999764
No 468
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.95 E-value=0.00074 Score=50.24 Aligned_cols=23 Identities=43% Similarity=0.537 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.|+|+|++|+|||||+|-+.+=.
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhcc
Confidence 68999999999999999887643
No 469
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.95 E-value=0.021 Score=41.58 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.+.+..
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999998754
No 470
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.93 E-value=0.00079 Score=48.18 Aligned_cols=21 Identities=52% Similarity=0.727 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 040481 19 IVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~ 39 (222)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 471
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.92 E-value=0.00081 Score=45.78 Aligned_cols=20 Identities=35% Similarity=0.614 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 040481 18 KIVIIGDSAVGKSNLLSRYA 37 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~ 37 (222)
.++++|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 57999999999999999975
No 472
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.92 E-value=0.00092 Score=46.94 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCcC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNEF 41 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~ 41 (222)
..++++|++|+||||+++.+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 3689999999999999999977654
No 473
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.90 E-value=0.00092 Score=49.97 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 040481 18 KIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (222)
.++++|++|+|||||++.++.
T Consensus 23 ~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 789999999999999998863
No 474
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.89 E-value=0.00083 Score=50.19 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
.++|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998765
No 475
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.89 E-value=0.00082 Score=52.80 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 040481 18 KIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (222)
-++|+||.|+|||||++.+++-
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999999983
No 476
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.89 E-value=0.0064 Score=53.07 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
=+++-||+|+||||.++.|....
T Consensus 47 iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999997653
No 477
>PRK06217 hypothetical protein; Validated
Probab=96.86 E-value=0.00095 Score=50.18 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~ 39 (222)
.+|+|+|.+|||||||.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999764
No 478
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.85 E-value=0.0012 Score=50.73 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=21.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 040481 15 YLFKIVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~ 39 (222)
...-|+|+|++|+|||||++.|.+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999764
No 479
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.85 E-value=0.001 Score=51.43 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.+.+..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 67999999999999999998754
No 480
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.85 E-value=0.001 Score=47.79 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~ 40 (222)
+.|.|+|+.++|||||+..|.+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999997654
No 481
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.84 E-value=0.0012 Score=54.21 Aligned_cols=22 Identities=45% Similarity=0.616 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 040481 19 IVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~~ 40 (222)
++++||+|||||||++.+.+-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998755
No 482
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.83 E-value=0.00095 Score=46.67 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 040481 19 IVIIGDSAVGKSNLLSRYARN 39 (222)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~ 39 (222)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999764
No 483
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.82 E-value=0.00097 Score=50.85 Aligned_cols=21 Identities=43% Similarity=0.567 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 040481 18 KIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (222)
-.+++||+|+|||||+++|-.
T Consensus 35 VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred eEEEECCCCcCHHHHHHHHHh
Confidence 358999999999999998843
No 484
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=96.82 E-value=0.021 Score=46.09 Aligned_cols=86 Identities=20% Similarity=0.251 Sum_probs=48.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccceeEEEEEEEECCeEEEEEEEeCCCcchhhhhHHHhhc--CCCEEEEE
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYR--GAVGALIV 95 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~vi~v 95 (222)
.|+|.|++|+||||+++.|-...+ ..+|-.....+......... ..+.+.++
T Consensus 8 ~i~i~G~~GsGKtt~~~~l~~~g~--------------------------~~~d~~~~~L~~~l~~~~~~~~~~~~~av~ 61 (288)
T PRK05416 8 LVIVTGLSGAGKSVALRALEDLGY--------------------------YCVDNLPPSLLPKLVELLAQSGGIRKVAVV 61 (288)
T ss_pred EEEEECCCCCcHHHHHHHHHHcCC--------------------------eEECCcCHHHHHHHHHHHHhcCCCCCeEEE
Confidence 689999999999999999842111 11232222222222222222 13567788
Q ss_pred EECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCC
Q 040481 96 YDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCD 132 (222)
Q Consensus 96 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D 132 (222)
+|+.....+......+..+... +.++.+|.-..+
T Consensus 62 iD~r~~~~~~~~~~~~~~L~~~---g~~~~iI~L~a~ 95 (288)
T PRK05416 62 IDVRSRPFFDDLPEALDELRER---GIDVRVLFLDAS 95 (288)
T ss_pred EccCchhhHHHHHHHHHHHHHc---CCcEEEEEEECC
Confidence 8887765445555666666553 334444544444
No 485
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.81 E-value=0.0011 Score=50.84 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.+.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998754
No 486
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.81 E-value=0.0011 Score=49.59 Aligned_cols=23 Identities=43% Similarity=0.582 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
-|+|+|++|||||||++.|....
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 47999999999999999998743
No 487
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.81 E-value=0.0011 Score=50.18 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.+.+..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998754
No 488
>PRK01889 GTPase RsgA; Reviewed
Probab=96.81 E-value=0.0014 Score=54.60 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
+++++|.+|+|||||++.|.+..
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhc
Confidence 78999999999999999998754
No 489
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.80 E-value=0.0011 Score=51.03 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.+.+..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67999999999999999998753
No 490
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.80 E-value=0.0011 Score=51.30 Aligned_cols=21 Identities=43% Similarity=0.593 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 040481 18 KIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (222)
-|+|+|++|+|||||++.+-+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999876
No 491
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.79 E-value=0.0012 Score=50.52 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 492
>PRK14530 adenylate kinase; Provisional
Probab=96.78 E-value=0.0012 Score=50.99 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 040481 17 FKIVIIGDSAVGKSNLLSRYAR 38 (222)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (222)
.+|+|+|+|||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3899999999999999999854
No 493
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.78 E-value=0.0012 Score=50.73 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.+.+..
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 494
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.78 E-value=0.0012 Score=51.58 Aligned_cols=23 Identities=39% Similarity=0.394 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998754
No 495
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.77 E-value=0.0012 Score=50.32 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 040481 19 IVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~~ 40 (222)
|+|.|++|||||||+++|.+..
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999997653
No 496
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.76 E-value=0.0013 Score=50.60 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.+.+..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
No 497
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.76 E-value=0.0028 Score=47.22 Aligned_cols=44 Identities=20% Similarity=0.085 Sum_probs=28.0
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040481 90 VGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLES 135 (222)
Q Consensus 90 d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 135 (222)
|++++|+|+.++.+-.. ..+...+. ....+.|+++|+||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence 78999999988643111 22222221 1123479999999999964
No 498
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.75 E-value=0.0014 Score=50.16 Aligned_cols=23 Identities=43% Similarity=0.496 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.+.+..
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 499
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.75 E-value=0.0014 Score=49.43 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++++|++|+|||||++.|.+..
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 68999999999999999998643
No 500
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.74 E-value=0.0014 Score=50.46 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 040481 18 KIVIIGDSAVGKSNLLSRYARNE 40 (222)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (222)
.++|+|++|+|||||++.|.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
Done!